Query psy6842
Match_columns 189
No_of_seqs 68 out of 70
Neff 3.3
Searched_HMMs 29240
Date Fri Aug 16 19:49:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6842.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6842hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hpw_C Protein CCDA; alpha+bet 37.2 17 0.00059 22.7 1.8 17 143-159 13-29 (36)
2 1q8h_A Osteocalcin; helix-turn 8.1 1.1E+02 0.0037 20.5 0.6 18 143-160 23-40 (49)
3 2dce_A KIAA1915 protein; swirm 7.1 5.5E+02 0.019 19.0 4.3 57 103-159 20-100 (111)
4 1vzm_A Osteocalcin; calcium-bi 6.4 96 0.0033 20.4 -0.3 18 143-160 17-34 (45)
5 2wux_A Polyhedrin; microcrysta 6.4 50 0.0017 28.4 -2.1 30 120-149 88-119 (245)
6 4b0z_A RPN12, 26S proteasome r 6.1 1.9E+02 0.0065 23.2 1.3 28 4-31 138-165 (229)
7 2l9b_B MRNA 3'-END-processing 5.2 1.6E+02 0.0053 20.1 0.2 12 72-83 17-28 (53)
8 1uj8_A ORF3, hypothetical prot 5.2 4.7E+02 0.016 18.9 2.8 27 98-124 31-63 (77)
9 3r8s_L 50S ribosomal protein L 5.1 2.3E+02 0.0077 22.1 1.1 39 67-105 54-94 (143)
10 2hql_A Hypothetical protein Mg 4.9 3.3E+02 0.011 20.7 1.9 31 137-167 48-78 (110)
No 1
>3hpw_C Protein CCDA; alpha+beta, SH3 domain, intrinsically disordered, toxin/toxin repressor complex; 1.45A {Escherichia coli} PDB: 3g7z_C 3tcj_T
Probab=37.21 E-value=17 Score=22.67 Aligned_cols=17 Identities=18% Similarity=0.014 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHhhcce
Q psy6842 143 KELMKLWNLHVMKYGYI 159 (189)
Q Consensus 143 kqIpkacnlFvm~hG~i 159 (189)
.+-+.+||.||.+||.-
T Consensus 13 ~~ai~~~N~~ve~~Gl~ 29 (36)
T 3hpw_C 13 QEGMAEVARFIEMNGSF 29 (36)
T ss_dssp HHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 35678999999999964
No 2
>1q8h_A Osteocalcin; helix-turn-helix-turn-helix, paper-CLIP, hydroxyapatite CRYS surface binding protein, calcium binding protein; HET: CGU; 2.00A {Sus scrofa} SCOP: g.32.1.1 PDB: 1q3m_A*
Probab=8.06 E-value=1.1e+02 Score=20.45 Aligned_cols=18 Identities=17% Similarity=-0.009 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHhhccee
Q psy6842 143 KELMKLWNLHVMKYGYIV 160 (189)
Q Consensus 143 kqIpkacnlFvm~hG~ia 160 (189)
++...+|+.+.+++|.++
T Consensus 23 CE~~~~C~~~A~~~G~~~ 40 (49)
T 1q8h_A 23 CELNPDCDELADHIGFQE 40 (49)
T ss_dssp HHHSHHHHHHHHHHCHHH
T ss_pred hccchhHHHHHHHHHHHH
Confidence 677889999999999875
No 3
>2dce_A KIAA1915 protein; swirm domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=7.14 E-value=5.5e+02 Score=19.05 Aligned_cols=57 Identities=11% Similarity=0.026 Sum_probs=32.9
Q ss_pred hhhchhhhhhhh-----cccCC--CchhhHHHHHHhhhHhhh--------------ccc---cchHHHHHHHHHHHhhcc
Q psy6842 103 KWLQTKTKMMID-----EFTDV--NEGEKELMKLWNLHVMKY--------------GWG---REKELMKLWNLHVMKYGY 158 (189)
Q Consensus 103 ~wl~~eT~~mLd-----EF~DV--Se~EKe~MklWNsfV~k~--------------~~i---ADkqIpkacnlFvm~hG~ 158 (189)
.||+.+....++ ||-+- +...+..|+..|.-|... +++ +|-..-----.|++++|-
T Consensus 20 ~wf~~~~ih~iEk~~lPefF~g~~~ktpe~Yl~iRN~iI~~yr~np~~yLT~t~~rr~L~~~gDv~~i~RVh~FLe~wGL 99 (111)
T 2dce_A 20 IEIDRNIIQEEEKQAIPEFFEGRQAKTPERYLKIRNYILDQWEICKPKYLNKTSVRPGLKNCGDVNCIGRIHTYLELIGA 99 (111)
T ss_dssp CCCCSSCCCHHHHTTSGGGGSCCSSCCHHHHHHHHHHHHHHHHHHTTSCCCGGGTTTTTSSSSCHHHHHHHHHHHHHHSS
T ss_pred cccCcccCCHHHHHhChHHhcCCcccCHHHHHHHHHHHHHHHHhCCcceeeHHHHHHhcccccCHHHHHHHHHHHHHcCe
Confidence 566655555554 66433 444556666666444333 223 566555555678999987
Q ss_pred e
Q psy6842 159 I 159 (189)
Q Consensus 159 i 159 (189)
|
T Consensus 100 I 100 (111)
T 2dce_A 100 I 100 (111)
T ss_dssp S
T ss_pred e
Confidence 6
No 4
>1vzm_A Osteocalcin; calcium-binding protein, bone GLA protein, BGP, hydroxyapatite, gamma carboxyl glutamic acid, vitamin K, bone, mineralization; HET: CGU; 1.4A {Argyrosomus regius}
Probab=6.41 E-value=96 Score=20.40 Aligned_cols=18 Identities=11% Similarity=-0.073 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHhhccee
Q psy6842 143 KELMKLWNLHVMKYGYIV 160 (189)
Q Consensus 143 kqIpkacnlFvm~hG~ia 160 (189)
++...+|+.+.+++|.++
T Consensus 17 CE~~~~C~~~A~~~G~~~ 34 (45)
T 1vzm_A 17 CETNMACDEMADAQGIVA 34 (45)
T ss_dssp HHTCHHHHHHHHHHHHHH
T ss_pred hccchhHHHHHHHHHHHH
Confidence 566789999999999875
No 5
>2wux_A Polyhedrin; microcrystals, polyhedra, viral protein, viral occlusion BODY, viral capsid; 1.84A {Autographa californica nuclearpolyhedrosis virus} PDB: 3jw6_A* 2wuy_A 3jvb_A
Probab=6.37 E-value=50 Score=28.39 Aligned_cols=30 Identities=17% Similarity=0.315 Sum_probs=20.5
Q ss_pred CchhhHHHH-HHhhhHhhh-ccccchHHHHHH
Q psy6842 120 NEGEKELMK-LWNLHVMKY-GWGREKELMKLW 149 (189)
Q Consensus 120 Se~EKe~Mk-lWNsfV~k~-~~iADkqIpkac 149 (189)
|=.=||+++ -|++||-+. .++.|-+||.+|
T Consensus 88 NWsGkEflREtWTrF~edsFPI~ndQEimDvf 119 (245)
T 2wux_A 88 GWKGKEFYRETWTRFMEDSFPIVNDQEVMDVF 119 (245)
T ss_dssp CCCHHHHHHHHHHHHHHHHCSCCSEEEEEEEE
T ss_pred ecCcHHHHHHHHHHHHhhcCCccchHhhhhhe
Confidence 334556654 588888765 777888887764
No 6
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=6.09 E-value=1.9e+02 Score=23.25 Aligned_cols=28 Identities=36% Similarity=0.453 Sum_probs=19.6
Q ss_pred cchhhHHHHhhhHHhhhhhcccccCCcc
Q psy6842 4 AISLQQTYMEAKFQVFFSGLKRLRSPYF 31 (189)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (189)
|+.|.|..|+..+.-||.-++...+|.+
T Consensus 138 al~l~~al~~GnY~kff~l~~~~p~~~~ 165 (229)
T 4b0z_A 138 VISLEQNVMEGAFDKVASMIRSCNFPEF 165 (229)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCCGGG
T ss_pred HHHHHHHHHcCCHHHHHHHHhcCccchH
Confidence 4567777788887777777776655543
No 7
>2l9b_B MRNA 3'-END-processing protein RNA14; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}
Probab=5.20 E-value=1.6e+02 Score=20.11 Aligned_cols=12 Identities=25% Similarity=0.130 Sum_probs=8.9
Q ss_pred cCCCcceeeccc
Q psy6842 72 SGHNRLYHHTIT 83 (189)
Q Consensus 72 ~ghnR~yfHs~t 83 (189)
-+|+||||-+-.
T Consensus 17 vLPKRQYFK~~~ 28 (53)
T 2l9b_B 17 VIPKRQYFNTNL 28 (53)
T ss_dssp HSBCGGGGCSSC
T ss_pred HcchHhhhcccc
Confidence 478999987643
No 8
>1uj8_A ORF3, hypothetical protein YFHJ; iron-sulfur cluster, ISC, structural genomics, unknown function; 1.75A {Escherichia coli} SCOP: a.159.5.1 PDB: 2bzt_A
Probab=5.16 E-value=4.7e+02 Score=18.85 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=16.8
Q ss_pred CCCChhhhchhhh----hhhhcccCCCch--hh
Q psy6842 98 DQKDPKWLQTKTK----MMIDEFTDVNEG--EK 124 (189)
Q Consensus 98 dE~Dp~wl~~eT~----~mLdEF~DVSe~--EK 124 (189)
-++||...++-+. .-|.+|+|+... ||
T Consensus 31 Pd~DP~tvRFTdL~~wV~~L~~FdDdp~~~nEk 63 (77)
T 1uj8_A 31 PDLDPKTVRFTDMHQWICDLEDFDDDPQASNEK 63 (77)
T ss_dssp TTSCGGGCCHHHHHHHHHTSTTBCSCGGGCCHH
T ss_pred CCCCcCEeeHHHHHHHHHhCCCcCCCcccccHH
Confidence 4578877765443 234599987653 55
No 9
>3r8s_L 50S ribosomal protein L15; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_L 3j19_L 2wwq_L 3oat_L* 3oas_L* 3ofd_L 3ofc_L 3ofr_L* 3ofz_L* 3og0_L 3ofq_L 3r8t_L 3i1n_L 1p85_J 1p86_J 1vs8_L 1vs6_L 2aw4_L 2awb_L 1vt2_L ...
Probab=5.13 E-value=2.3e+02 Score=22.08 Aligned_cols=39 Identities=5% Similarity=-0.119 Sum_probs=25.6
Q ss_pred CCCcccCCCccee--ecccceecCCCCCCCCCCCCCChhhh
Q psy6842 67 HRPVVSGHNRLYH--HTITCLPVLPKEMDQDSDDQKDPKWL 105 (189)
Q Consensus 67 qr~y~~ghnR~yf--Hs~tcqPlr~kE~D~DSEdE~Dp~wl 105 (189)
.|-|.+.|+|-|. |...+.++...+++.-+++++|.+-|
T Consensus 54 ~Pl~rRlPK~GF~~~~~~~y~~VNL~~L~~~~~~~I~~~~L 94 (143)
T 3r8s_L 54 MPLYRRLPKFGFTSRKAAITAEIRLSDLAKVEGGVVDLNTL 94 (143)
T ss_dssp CCHHHHSCCCCCCCSTGGGEEECCSSSSSCSSSSEEEHHHH
T ss_pred CccEEEccccccCCcccceeEEEEHHHhhhccCCeecHHHH
Confidence 3446678888877 35667888888875433455555544
No 10
>2hql_A Hypothetical protein Mg376 homolog; structural genomics, conserved hypothetical protein, GI:1673959, MPN554, OB fold; 2.00A {Mycoplasma pneumoniae}
Probab=4.92 E-value=3.3e+02 Score=20.66 Aligned_cols=31 Identities=23% Similarity=0.159 Sum_probs=28.0
Q ss_pred hccccchHHHHHHHHHHHhhcceeeeccccc
Q psy6842 137 YGWGREKELMKLWNLHVMKYGYIVWLGDFKQ 167 (189)
Q Consensus 137 ~~~iADkqIpkacnlFvm~hG~ia~~~~~~~ 167 (189)
+++.|.+|+.--.+.|+.+|..|+++|-.+-
T Consensus 48 yViYAN~QL~~ELEky~~k~k~isieG~L~T 78 (110)
T 2hql_A 48 YVIYANGQLAYELEKHTKKYKTISIEGILRT 78 (110)
T ss_dssp EEEEEEHHHHHHHHHHHTTCSEEEEEEEEEE
T ss_pred EEEEECCeeehhHHHhhhhceEEEEeeehhh
Confidence 4788999999999999999999999998763
Done!