Query psy6842
Match_columns 189
No_of_seqs 68 out of 70
Neff 3.3
Searched_HMMs 13730
Date Fri Aug 16 19:49:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6842.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6842hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fq3a1 a.4.1.18 (A:311-395) T 24.6 33 0.0024 22.8 3.5 21 139-159 61-81 (85)
2 d2hkva1 a.213.1.2 (A:1-147) Hy 20.0 15 0.0011 24.8 0.8 29 146-176 118-146 (147)
3 d1iaya_ c.67.1.4 (A:) 1-aminoc 13.0 37 0.0027 26.7 1.7 30 27-57 14-45 (428)
4 d1wdna_ c.94.1.1 (A:) Glutamin 8.8 1.2E+02 0.0088 20.4 3.1 33 119-153 186-218 (223)
5 d2byka1 a.22.1.3 (A:29-100) Ch 7.8 89 0.0065 19.7 1.8 18 145-162 18-35 (72)
6 d1xm7a_ d.159.1.8 (A:) Hypothe 7.6 72 0.0052 22.9 1.4 25 113-137 20-44 (188)
7 d2dw4a1 a.4.1.18 (A:172-273) L 7.4 2E+02 0.015 19.1 3.7 27 141-174 73-99 (102)
8 d1dzfa1 c.52.3.1 (A:5-143) Euk 6.9 1E+02 0.0074 21.7 2.0 36 123-158 2-44 (139)
9 d1m7ya_ c.67.1.4 (A:) 1-aminoc 6.7 67 0.0049 25.1 0.9 27 139-165 204-230 (431)
10 d1zcza2 c.97.1.4 (A:158-452) A 6.7 63 0.0046 26.0 0.7 14 38-51 12-25 (295)
No 1
>d2fq3a1 a.4.1.18 (A:311-395) Transcription regulatory protein swi3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.63 E-value=33 Score=22.79 Aligned_cols=21 Identities=14% Similarity=0.202 Sum_probs=16.4
Q ss_pred cccchHHHHHHHHHHHhhcce
Q psy6842 139 WGREKELMKLWNLHVMKYGYI 159 (189)
Q Consensus 139 ~iADkqIpkacnlFvm~hG~i 159 (189)
..+|-..-...-.|+.+||.|
T Consensus 61 ~~~d~~~~~ri~~FL~~~G~I 81 (85)
T d2fq3a1 61 VSGDAAALFRLHKFLTKWGLI 81 (85)
T ss_dssp SCSCHHHHHHHHHHHHHTTSS
T ss_pred ccCCHHHHHHHHHHHHHcCcc
Confidence 456777777788899999987
No 2
>d2hkva1 a.213.1.2 (A:1-147) Hypothetical protein ExigDRAFT_2445 {Exiguobacterium sibiricum 255-15 [TaxId: 262543]}
Probab=20.01 E-value=15 Score=24.78 Aligned_cols=29 Identities=14% Similarity=0.077 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhcceeeecccccCCCCCCccc
Q psy6842 146 MKLWNLHVMKYGYIVWLGDFKQGGYQPKIPL 176 (189)
Q Consensus 146 pkacnlFvm~hG~ia~~~~~~~~~~~~~~~~ 176 (189)
..+++.-+.+.|+|... .|+.|++|+++|
T Consensus 118 ~~~i~H~~hHrGQi~~~--LR~lG~~p~~~l 146 (147)
T d2hkva1 118 LEAAVHLYHHRSQLLDY--LNLLGYDIKLDL 146 (147)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHTTCCCCCCC
T ss_pred HHHHhHHHHHHHHHHHH--HHHcCCCCCCCC
Confidence 34444445555888775 699999999876
No 3
>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}
Probab=13.03 E-value=37 Score=26.73 Aligned_cols=30 Identities=27% Similarity=0.555 Sum_probs=19.5
Q ss_pred cCCcchhhhhhcc--cCCccCcCcccccccccc
Q psy6842 27 RSPYFDYQKSFEL--HGANEQSKGIMTDLKLND 57 (189)
Q Consensus 27 ~~~~~~~~~~~~~--~g~~~~~kGa~idvSlnE 57 (189)
.||||+--|.|.. |=...-|+|. |++.++|
T Consensus 14 ~s~y~~g~~~~~~~~~~~~~np~G~-i~l~~ae 45 (428)
T d1iaya_ 14 NSPYFDGWKAYDSDPFHPLKNPNGV-IQMGLAE 45 (428)
T ss_dssp -CCTTHHHHHHHHSBCCSSSSTTSB-EECSSCC
T ss_pred CChhhHhHHHhccCCCCCcCCCCce-EEeeccc
Confidence 6999987666654 3334456786 7777765
No 4
>d1wdna_ c.94.1.1 (A:) Glutamine-binding protein {Escherichia coli [TaxId: 562]}
Probab=8.85 E-value=1.2e+02 Score=20.37 Aligned_cols=33 Identities=12% Similarity=0.118 Sum_probs=22.3
Q ss_pred CCchhhHHHHHHhhhHhhhccccchHHHHHHHHHH
Q psy6842 119 VNEGEKELMKLWNLHVMKYGWGREKELMKLWNLHV 153 (189)
Q Consensus 119 VSe~EKe~MklWNsfV~k~~~iADkqIpkacnlFv 153 (189)
++++..++...+|..|.+- .+|+.+.++.+.|.
T Consensus 186 ~~k~~~~l~~~in~~i~~~--~~~G~~~~i~~ky~ 218 (223)
T d1wdna_ 186 FPKGSDELRDKVNGALKTL--RENGTYNEIYKKWF 218 (223)
T ss_dssp ECTTCHHHHHHHHHHHHHH--HHTSHHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHH--HhCcHHHHHHHHhc
Confidence 4455567778888888763 46677777766654
No 5
>d2byka1 a.22.1.3 (A:29-100) Chrac-16 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=7.81 E-value=89 Score=19.69 Aligned_cols=18 Identities=17% Similarity=0.115 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhhcceeee
Q psy6842 145 LMKLWNLHVMKYGYIVWL 162 (189)
Q Consensus 145 IpkacnlFvm~hG~ia~~ 162 (189)
|-+|||+|+..=...++.
T Consensus 18 vskAtElFi~~L~~~a~~ 35 (72)
T d2byka1 18 MTKCTELFVRHLAGAAYT 35 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 679999999876655554
No 6
>d1xm7a_ d.159.1.8 (A:) Hypothetical protein aq_1666 {Aquifex aeolicus [TaxId: 63363]}
Probab=7.60 E-value=72 Score=22.85 Aligned_cols=25 Identities=4% Similarity=-0.173 Sum_probs=20.2
Q ss_pred hhcccCCCchhhHHHHHHhhhHhhh
Q psy6842 113 IDEFTDVNEGEKELMKLWNLHVMKY 137 (189)
Q Consensus 113 LdEF~DVSe~EKe~MklWNsfV~k~ 137 (189)
.+.|.++.+-...++..||..|.+.
T Consensus 20 ~r~f~~~~~~~~~ii~~wn~~V~~~ 44 (188)
T d1xm7a_ 20 LNPEVRFKGFEIVILTNLLKVLKPE 44 (188)
T ss_dssp HSTTTCCTTHHHHHHHHHHTTCCTT
T ss_pred cCCCCCHHHHHHHHHHHHHhhcCCC
Confidence 4678888888888899999988665
No 7
>d2dw4a1 a.4.1.18 (A:172-273) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.38 E-value=2e+02 Score=19.13 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=19.4
Q ss_pred cchHHHHHHHHHHHhhcceeeecccccCCCCCCc
Q psy6842 141 REKELMKLWNLHVMKYGYIVWLGDFKQGGYQPKI 174 (189)
Q Consensus 141 ADkqIpkacnlFvm~hG~ia~~~~~~~~~~~~~~ 174 (189)
+|-..-...-.|+.+||.| |-|..|.|
T Consensus 73 ~d~~li~ri~~FL~~~G~I-------NfGv~~r~ 99 (102)
T d2dw4a1 73 SDTVLVHRVHSYLERHGLI-------NFGIYKRI 99 (102)
T ss_dssp GCHHHHHHHHHHHHHTTSS-------SCSSCBCC
T ss_pred ccHHHHHHHHHHHHHcCce-------eeCcCcCC
Confidence 5566666678999999987 55665544
No 8
>d1dzfa1 c.52.3.1 (A:5-143) Eukaryotic RPB5 N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.92 E-value=1e+02 Score=21.73 Aligned_cols=36 Identities=22% Similarity=0.363 Sum_probs=26.2
Q ss_pred hhHHHHHHh-----hhHhhh-c-cccchHHHHHHHHHHHhhcc
Q psy6842 123 EKELMKLWN-----LHVMKY-G-WGREKELMKLWNLHVMKYGY 158 (189)
Q Consensus 123 EKe~MklWN-----sfV~k~-~-~iADkqIpkacnlFvm~hG~ 158 (189)
|++.-|||. ..|.+. + .++|.++.--.+.|..++|.
T Consensus 2 d~e~~rlfr~rrTv~EMl~DRGY~V~~~el~~s~~~F~~~~~~ 44 (139)
T d1dzfa1 2 ERNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCD 44 (139)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTBCCCHHHHTCCHHHHHHHHBC
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCcCCHHHHcCCHHHHHHHHcc
Confidence 556666776 344444 4 47899999889999999975
No 9
>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}
Probab=6.75 E-value=67 Score=25.10 Aligned_cols=27 Identities=11% Similarity=-0.017 Sum_probs=18.6
Q ss_pred cccchHHHHHHHHHHHhhcceeeeccc
Q psy6842 139 WGREKELMKLWNLHVMKYGYIVWLGDF 165 (189)
Q Consensus 139 ~iADkqIpkacnlFvm~hG~ia~~~~~ 165 (189)
.+-..+--+....+..+||..+++|+.
T Consensus 204 ~~~s~~~l~~i~~~a~~~~~~vI~De~ 230 (431)
T d1m7ya_ 204 TTMTRNELYLLLSFVEDKGIHLISDEI 230 (431)
T ss_dssp CCCCHHHHHHHHHHHHHHTCEEEEECT
T ss_pred ccccccccccccccccccCcceeeccc
Confidence 334455556666677889998888873
No 10
>d1zcza2 c.97.1.4 (A:158-452) AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC {Thermotoga maritima [TaxId: 2336]}
Probab=6.69 E-value=63 Score=25.99 Aligned_cols=14 Identities=21% Similarity=0.204 Sum_probs=11.2
Q ss_pred cccCCccCcCcccc
Q psy6842 38 ELHGANEQSKGIMT 51 (189)
Q Consensus 38 ~~~g~~~~~kGa~i 51 (189)
=|||-|||-+++-.
T Consensus 12 LRYGENPHQ~A~~y 25 (295)
T d1zcza2 12 LRYGENPHEKAFVY 25 (295)
T ss_dssp CSCSSSTTSCEEEE
T ss_pred CCCCCCcCcccccc
Confidence 47999999997643
Done!