RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6842
(189 letters)
>gnl|CDD|204299 pfam09733, VEFS-Box, VEFS-Box of polycomb protein. The VEFS-Box
(VRN2-EMF2-FIS2-Su(z)12) box is the C-terminal region of
these proteins, characterized by an acidic cluster and a
tryptophan/methionine-rich sequence, the acidic-W/M
domain. Some of these sequences are associated with a
zinc-finger domain about 100 residues towards the
N-terminus. This protein is one of the polycomb cluster
of proteins which control HOX gene transcription as it
functions in heterochromatin-mediated repression.
Length = 141
Score = 111 bits (279), Expect = 1e-31
Identities = 36/81 (44%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 60 DDADTDGHRPVVSGHNRLYHHTITCLPVLPKEM--DQDSDDQKDPKWLQTKTKMMIDEFT 117
A+ R + H R + H+ TC P+ P+E+ D+DS+D+ D WL +T+ M+DEF
Sbjct: 4 LSAERSDQRSYILLHKRQFFHSHTCQPMHPEEVMSDRDSEDEVDDDWLDLETRQMLDEFV 63
Query: 118 DVNEGEKELMKLWNLHVMKYG 138
DVNEGEK +MKLWN V K
Sbjct: 64 DVNEGEKRIMKLWNSFVRKQR 84
>gnl|CDD|168478 PRK06234, PRK06234, methionine gamma-lyase; Provisional.
Length = 400
Score = 31.0 bits (70), Expect = 0.34
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 15/72 (20%)
Query: 17 QVFFSGLKRLRSPYFDYQK----------SFELHGANEQSKGIMTDLKLNDMA---DDAD 63
+V++ GL+ Y++ K SFEL G E+ K +M ++KL +A DA+
Sbjct: 289 KVYYPGLES--FEYYELAKKQMSLPGAMISFELKGGVEEGKVVMNNVKLATLAVSLGDAE 346
Query: 64 TDGHRPVVSGHN 75
T P H+
Sbjct: 347 TLIQHPASMTHS 358
>gnl|CDD|227046 COG4702, COG4702, Uncharacterized conserved protein [Function
unknown].
Length = 168
Score = 28.2 bits (63), Expect = 1.6
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 24 KRLRSPYFDYQKSFEL-----HGANEQSKGIMTDLKLNDM 58
+RL+ FDY +F L A + I D+ LN
Sbjct: 19 QRLQFSSFDYADAFSLGTYIRRAAKKNKLPIAIDITLNGH 58
>gnl|CDD|179250 PRK01215, PRK01215, competence damage-inducible protein A;
Provisional.
Length = 264
Score = 28.4 bits (64), Expect = 2.1
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 12 MEAKFQVFFSGLKRLRSPYFDYQKSFELHGANEQS 46
MEA F+ F L + R P Y+ S + G E
Sbjct: 159 MEAIFENFVEPLLKNRPPLKYYEDSILVEGVMESD 193
>gnl|CDD|182838 PRK10919, PRK10919, ATP-dependent DNA helicase Rep; Provisional.
Length = 672
Score = 27.5 bits (61), Expect = 4.6
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Query: 76 RLYH-HTITC-------LPVLPKEMDQDSDDQKDPKWLQTKTKMMIDEFTDVNEGEKELM 127
LY H C L +LP + Q +++ ++ +W +++DE+ D N + EL+
Sbjct: 169 GLYDAHLKACNVLDFDDLILLPTLLLQRNEEVRE-RWQNKIRYLLVDEYQDTNTSQYELV 227
Query: 128 KL 129
KL
Sbjct: 228 KL 229
>gnl|CDD|236486 PRK09369, PRK09369, UDP-N-acetylglucosamine
1-carboxyvinyltransferase; Validated.
Length = 417
Score = 26.9 bits (61), Expect = 7.5
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 54 KLNDMADDADTDGHRPVVSGHNRLY 78
+L M D + DGH VV G +L
Sbjct: 338 ELIRMGADIEVDGHTAVVRGVEKLS 362
>gnl|CDD|153425 cd07996, WGR_MMR_like, WGR domain of molybdate metabolism regulator
and related proteins. The WGR domain is found in the
putative Escherichia coli molybdate metabolism regulator
and related bacterial proteins, as well as in various
other bacterial proteins of unknown function. It has
been called WGR after the most conserved central motif
of the domain. The domain appears to occur in
single-domain proteins and in a variety of domain
architectures, together with ATP-dependent DNA ligase
domains, WD40 repeats, leucine-rich repeats, and other
domains. It has been proposed to function as a nucleic
acid binding domain.
Length = 74
Score = 25.3 bits (56), Expect = 7.9
Identities = 7/23 (30%), Positives = 8/23 (34%)
Query: 107 TKTKMMIDEFTDVNEGEKELMKL 129
TK + F E K KL
Sbjct: 40 TKGQSRTKTFDSEEEALKAAEKL 62
>gnl|CDD|238913 cd01938, ADPGK_ADPPFK, ADP-dependent glucokinase (ADPGK) and
phosphofructokinase (ADPPFK). ADPGK and ADPPFK are
proteins that rely on ADP rather than ATP to donate a
phosphoryl group. They are found in certain
hyperthermophilic archaea and in higher eukaryotes. A
functional ADPGK has been characterized in mouse and is
assumed to be desirable during ischemia/hypoxia. ADPGK
and ADPPFK contain a large and a small domain with the
binding site located in a groove between the domains.
Partial domain closing is seen when ADP is bound, and
further domain closing is observed when glucose is also
bound. The oligomerization state apparently varies
depending on the species, with some existing as
monomers, some as dimers, and some as tetramers.
Length = 445
Score = 26.6 bits (59), Expect = 9.8
Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 111 MMIDEFTDVNEGEKELMKLWNLHVMK---YGWGREKELMKL 148
M + F+ + E + +L L L +M+ + G KEL++
Sbjct: 193 MREEFFSSILEFQPDLAVLSGLQMMEGQSFDEGTRKELLER 233
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.419
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,531,275
Number of extensions: 834180
Number of successful extensions: 563
Number of sequences better than 10.0: 1
Number of HSP's gapped: 562
Number of HSP's successfully gapped: 14
Length of query: 189
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 98
Effective length of database: 6,901,388
Effective search space: 676336024
Effective search space used: 676336024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.4 bits)