RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy6842
         (189 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 38.9 bits (90), Expect = 6e-04
 Identities = 24/117 (20%), Positives = 44/117 (37%), Gaps = 22/117 (18%)

Query: 41   GANEQSKGIM-TDLKLN-----DMADDADTDGHRPVVSGHNR-LYHHTITCLPVL--PKE 91
            G+  Q +G M  DL        D+ + AD          H +  Y  +I  + V+  P  
Sbjct: 1625 GS--QEQG-MGMDLYKTSKAAQDVWNRAD---------NHFKDTYGFSILDI-VINNPVN 1671

Query: 92   MDQDSDDQKDPKWLQTKTKMMIDEFTDVNEGEKELMKLWNLHVMKYGWGREKELMKL 148
            +      +K  +  +  + M+ +   D     +++ K  N H   Y +  EK L+  
Sbjct: 1672 LTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA 1728


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 37.1 bits (85), Expect = 0.002
 Identities = 18/123 (14%), Positives = 42/123 (34%), Gaps = 16/123 (13%)

Query: 32  DYQKSFELHGANEQSKGIMTDLKLNDMADDADTDGHRPVVSGHNRLYHHTITCLPVLPKE 91
            +  +F+     +  K I++  +++ +    D           +         L    +E
Sbjct: 28  AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV---------SGTL-RLFWTLLSKQEE 77

Query: 92  MDQ---DSDDQKDPKWLQTKTKM-MIDEFTDVNEGEKELMKLWNLH--VMKYGWGREKEL 145
           M Q   +   + + K+L +  K              ++  +L+N +    KY   R +  
Sbjct: 78  MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY 137

Query: 146 MKL 148
           +KL
Sbjct: 138 LKL 140


>1is3_A Congerin II; complex with lactose and MES, sugar binding protein;
           HET: LAT MES; 1.45A {Conger myriaster} SCOP: b.29.1.3
           PDB: 1is4_A* 1is5_A 1is6_A* 1wld_A* 1wlw_A* 1wlc_A*
           3ak0_A* 3ajz_A*
          Length = 135

 Score = 25.7 bits (56), Expect = 5.9
 Identities = 9/76 (11%), Positives = 25/76 (32%), Gaps = 9/76 (11%)

Query: 120 NEGEKELMKLWNLHVMKYGWGREKELMKLW---------NLHVMKYGYIVWLGDFKQGGY 170
           + G  + + + N  V   GW +E+   K            +    + + + L + +   +
Sbjct: 50  SYGADQNVLVLNSLVHNVGWQQEERSKKFPFTKGDHFQTTITFDTHTFYIQLSNGETVEF 109

Query: 171 QPKIPLKKKQTLSVKG 186
             +        + + G
Sbjct: 110 PNRNKDAAFNLIYLAG 125


>3lm8_A Thiamine pyrophosphokinase; structural genomics, PSI-2, protein
           structure initiative, northeast structural genomics
           consortium, NESG; HET: VIB; 2.60A {Bacillus subtilis}
          Length = 222

 Score = 25.9 bits (56), Expect = 8.3
 Identities = 12/100 (12%), Positives = 30/100 (30%), Gaps = 8/100 (8%)

Query: 72  SGHNRLYHHTITCLPVLPKEMDQDSDDQKD---PKWLQTKTKMMIDEFTDVNEGEKELMK 128
            G   L    I  +     + D  ++ ++                 + TD++      ++
Sbjct: 33  KGTVTLLDAGIIPV-EAFGDFDSITEQERRRIEKAAPALHVYQAEKDQTDLDLALDWALE 91

Query: 129 LWNLHVMKYGWGREKELMKLWNLHVM----KYGYIVWLGD 164
                +  +G    +    L N+ ++    K    + L D
Sbjct: 92  KQPDIIQIFGITGGRADHFLGNIQLLYKGVKTNIKIRLID 131


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.318    0.135    0.419 

Gapped
Lambda     K      H
   0.267   0.0688    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,922,671
Number of extensions: 158589
Number of successful extensions: 284
Number of sequences better than 10.0: 1
Number of HSP's gapped: 283
Number of HSP's successfully gapped: 18
Length of query: 189
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 101
Effective length of database: 4,244,745
Effective search space: 428719245
Effective search space used: 428719245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.7 bits)