BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy6845
         (67 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8STF6|DYC1_CAEEL Dystrophin-like protein 1 OS=Caenorhabditis elegans GN=dyc-1 PE=1
          SV=1
          Length = 887

 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 29/39 (74%), Gaps = 2/39 (5%)

Query: 1  MPSKKQQ--YNLVQQDEYDTRIPMHSEEAFQHGITFQAK 37
          MP +K+   Y+++  D YD RIP+H+E A+QHGI F+AK
Sbjct: 1  MPVRKKHGPYDIIADDVYDCRIPLHNELAYQHGIHFEAK 39


>sp|O54960|CAPON_RAT Carboxyl-terminal PDZ ligand of neuronal nitric oxide synthase
          protein OS=Rattus norvegicus GN=Nos1ap PE=1 SV=1
          Length = 503

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/37 (64%), Positives = 31/37 (83%), Gaps = 2/37 (5%)

Query: 1  MPSKKQQYNLVQQDEYDTRIPMHSEEAFQHGITFQAK 37
          MPSK + YNLV  D +D RIP+H+E+AFQHGI+F+AK
Sbjct: 1  MPSKTK-YNLVD-DGHDLRIPLHNEDAFQHGISFEAK 35


>sp|Q9D3A8|CAPON_MOUSE Carboxyl-terminal PDZ ligand of neuronal nitric oxide synthase
          protein OS=Mus musculus GN=Nos1ap PE=1 SV=3
          Length = 503

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/37 (64%), Positives = 31/37 (83%), Gaps = 2/37 (5%)

Query: 1  MPSKKQQYNLVQQDEYDTRIPMHSEEAFQHGITFQAK 37
          MPSK + YNLV  D +D RIP+H+E+AFQHGI+F+AK
Sbjct: 1  MPSKTK-YNLVD-DGHDLRIPLHNEDAFQHGISFEAK 35


>sp|O75052|CAPON_HUMAN Carboxyl-terminal PDZ ligand of neuronal nitric oxide synthase
          protein OS=Homo sapiens GN=NOS1AP PE=1 SV=3
          Length = 506

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/37 (64%), Positives = 30/37 (81%), Gaps = 2/37 (5%)

Query: 1  MPSKKQQYNLVQQDEYDTRIPMHSEEAFQHGITFQAK 37
          MPSK + YNLV  D +D RIP+H+E+AFQHGI F+AK
Sbjct: 1  MPSKTK-YNLVD-DGHDLRIPLHNEDAFQHGICFEAK 35


>sp|Q8SXX4|CAPON_DROME Capon-like protein OS=Drosophila melanogaster GN=CG42673 PE=2
          SV=1
          Length = 698

 Score = 40.0 bits (92), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/37 (62%), Positives = 29/37 (78%), Gaps = 3/37 (8%)

Query: 1  MPSKKQQYNLVQQDEYDTRIPMHSEEAFQHGITFQAK 37
          MPS    Y+LVQ D+ D R+P+H+E+AF HGITFQAK
Sbjct: 1  MPSTP--YDLVQDDQ-DLRVPLHAEQAFFHGITFQAK 34


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.304    0.120    0.319 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,814,295
Number of Sequences: 539616
Number of extensions: 913821
Number of successful extensions: 25316
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 102
Number of HSP's that attempted gapping in prelim test: 18846
Number of HSP's gapped (non-prelim): 4753
length of query: 67
length of database: 191,569,459
effective HSP length: 39
effective length of query: 28
effective length of database: 170,524,435
effective search space: 4774684180
effective search space used: 4774684180
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 55 (25.8 bits)