Query psy6845
Match_columns 67
No_of_seqs 29 out of 31
Neff 1.9
Searched_HMMs 29240
Date Fri Aug 16 19:53:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6845.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6845hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f0w_A NUMB-R, NUMB-like prote 93.9 0.0061 2.1E-07 39.6 -1.1 36 7-43 15-53 (168)
2 1n3h_A SHC transforming protei 90.8 0.11 3.8E-06 35.4 2.0 26 18-43 35-61 (207)
3 1aqc_A X11; PTB domain; 2.30A 85.6 0.22 7.5E-06 32.7 0.7 17 26-42 2-18 (172)
4 3suz_A Amyloid beta A4 precurs 78.0 0.83 2.8E-05 32.7 1.4 16 26-41 3-18 (388)
5 1ntv_A Disabled homolog 1; bet 75.6 1.4 4.9E-05 27.9 1.9 17 27-43 12-29 (152)
6 3so6_A LDL receptor adaptor pr 71.4 1.4 4.7E-05 26.5 1.0 14 30-43 2-15 (137)
7 4dbb_A Amyloid beta A4 precurs 67.5 1.6 5.6E-05 28.1 0.8 14 30-43 7-20 (162)
8 1p3r_A Disabled homolog 2; PTB 66.1 2.9 9.8E-05 26.8 1.8 14 30-43 15-28 (160)
9 2ela_A Adapter protein contain 54.1 5 0.00017 26.3 1.3 30 7-43 11-40 (175)
10 2bps_A YUKD protein; ubiquitin 50.5 3.4 0.00012 25.1 0.0 12 13-24 16-27 (81)
11 2e2d_C TIMP-2, metalloproteina 43.0 11 0.00038 25.4 1.7 24 20-43 4-28 (180)
12 2ej8_A DCC-interacting protein 30.0 16 0.00056 23.1 0.8 13 31-43 15-27 (160)
13 2lhu_A Mybpc3 protein; cardiac 25.0 15 0.00052 24.7 -0.0 23 26-51 99-121 (124)
14 4dx8_A Integrin beta-1-binding 23.8 19 0.00065 24.8 0.3 27 10-36 75-110 (154)
15 1av3_A Kappa-PVIIA; kappa-cono 23.2 16 0.00056 19.1 -0.1 11 18-30 1-11 (27)
16 2gjf_A Designed protein; proca 22.8 42 0.0014 18.4 1.6 23 14-36 47-74 (78)
17 1vjq_A Designed protein; struc 21.9 35 0.0012 18.7 1.1 25 14-38 39-68 (79)
18 3iu4_H CHP3 FAB heavy chain; a 21.8 19 0.00066 22.9 0.0 8 18-25 255-262 (263)
19 3vcm_P Prorenin; aspartic prot 21.2 14 0.00048 19.2 -0.6 8 18-25 9-16 (43)
20 1jzp_A Skeletal dihydropydrine 21.1 43 0.0015 17.1 1.3 10 52-61 8-17 (26)
21 2ki0_A DS119; beta-alpha-beta, 20.8 63 0.0021 17.7 2.0 19 38-56 9-27 (36)
22 1tzs_P Activation peptide from 20.4 18 0.00062 16.6 -0.3 8 18-25 4-11 (35)
23 3dtp_E RLC, myosin regulatory 20.3 22 0.00075 21.4 0.0 8 44-51 6-13 (196)
No 1
>3f0w_A NUMB-R, NUMB-like protein; PH domain-like, PID domain, phosphoprotein, signaling protei structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} PDB: 1wj1_A 2nmb_A* 1ddm_A
Probab=93.90 E-value=0.0061 Score=39.62 Aligned_cols=36 Identities=19% Similarity=0.204 Sum_probs=27.2
Q ss_pred ccccccCCCccccc--cCCchhhhhhcc-eEeeeechhhH
Q psy6845 7 QYNLVQQDEYDTRI--PMHSEEAFQHGI-TFQAKTRQKNK 43 (67)
Q Consensus 7 ~YnLV~dD~~D~RI--PLHnEeAFqHGI-~FqAKyig~~~ 43 (67)
.|||+. +....+- -+|+++++.+|. .|.|||+|.-.
T Consensus 15 ~~~~~~-~s~~~~p~~w~~~~e~l~~g~~~f~vkYLGs~~ 53 (168)
T 3f0w_A 15 TENLYF-QSMASRPHQWQADEDAVRKGTCSFPVRYLGHVE 53 (168)
T ss_dssp CCCHHH-HHHHCCCTTTHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred ccccCC-CCcCCCCcCCcCCHHHHhCCceEEEEEEeeEEE
Confidence 588886 4444442 279999999998 89999998743
No 2
>1n3h_A SHC transforming protein; free protein, beta sandwich, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.2 PDB: 1oy2_A 2l1c_A* 1shc_A*
Probab=90.82 E-value=0.11 Score=35.41 Aligned_cols=26 Identities=15% Similarity=0.222 Sum_probs=21.8
Q ss_pred ccccCCchhhh-hhcceEeeeechhhH
Q psy6845 18 TRIPMHSEEAF-QHGITFQAKTRQKNK 43 (67)
Q Consensus 18 ~RIPLHnEeAF-qHGI~FqAKyig~~~ 43 (67)
.+=-+|+++++ ..||.|.|||+|+-+
T Consensus 35 ~~~W~h~~~~l~~~gv~f~vkYLGs~e 61 (207)
T 1n3h_A 35 TRGWLHPNDKVMGPGVSYLVRYMGCVE 61 (207)
T ss_dssp CCCSSSCHHHHHTTCEEEEEEEECEEE
T ss_pred cccCCCChHHhccCCceEEEEecceEE
Confidence 35578999987 699999999999864
No 3
>1aqc_A X11; PTB domain; 2.30A {Homo sapiens} SCOP: b.55.1.2 PDB: 1x11_A*
Probab=85.59 E-value=0.22 Score=32.66 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=14.8
Q ss_pred hhhhhcceEeeeechhh
Q psy6845 26 EAFQHGITFQAKTRQKN 42 (67)
Q Consensus 26 eAFqHGI~FqAKyig~~ 42 (67)
|++..||.|.|||.|+-
T Consensus 2 e~l~~Gv~f~vkYLGs~ 18 (172)
T 1aqc_A 2 EDLIDGIIFAANYLGST 18 (172)
T ss_dssp CCTTTCEEEEEEEEEEE
T ss_pred ccccCCceEEEEeceEE
Confidence 56789999999999975
No 4
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=77.98 E-value=0.83 Score=32.69 Aligned_cols=16 Identities=31% Similarity=0.393 Sum_probs=14.8
Q ss_pred hhhhhcceEeeeechh
Q psy6845 26 EAFQHGITFQAKTRQK 41 (67)
Q Consensus 26 eAFqHGI~FqAKyig~ 41 (67)
|.+-+||.|.|||.|.
T Consensus 3 e~l~~gv~f~~kylG~ 18 (388)
T 3suz_A 3 EDLIDGIIFAANYLGS 18 (388)
T ss_dssp HHHHHCEEEEEEEEEE
T ss_pred ccccCCcEEeeeEeee
Confidence 6789999999999997
No 5
>1ntv_A Disabled homolog 1; beta-sandwich, signaling protein; 1.50A {Mus musculus} SCOP: b.55.1.2 PDB: 1nu2_A* 1oqn_A*
Probab=75.64 E-value=1.4 Score=27.94 Aligned_cols=17 Identities=24% Similarity=0.487 Sum_probs=13.2
Q ss_pred hhhh-cceEeeeechhhH
Q psy6845 27 AFQH-GITFQAKTRQKNK 43 (67)
Q Consensus 27 AFqH-GI~FqAKyig~~~ 43 (67)
.|.. |+.|.|||+|+-+
T Consensus 12 ~~~g~gv~f~vkYLGs~e 29 (152)
T 1ntv_A 12 RFKGEGVRYKAKLIGIDE 29 (152)
T ss_dssp HHSTTCEEEEEEEEEEEE
T ss_pred hhcCCCcEEEEEeCCeEE
Confidence 3444 9999999999753
No 6
>3so6_A LDL receptor adaptor protein; PTB, endocytic adaptor, autosomal reces hypercholesterolemia, ARH, cholesterol; 1.37A {Rattus norvegicus}
Probab=71.44 E-value=1.4 Score=26.53 Aligned_cols=14 Identities=21% Similarity=0.254 Sum_probs=11.9
Q ss_pred hcceEeeeechhhH
Q psy6845 30 HGITFQAKTRQKNK 43 (67)
Q Consensus 30 HGI~FqAKyig~~~ 43 (67)
.|++|.|||+|+..
T Consensus 2 ~g~~f~v~YLGs~~ 15 (137)
T 3so6_A 2 EGMVFSLKYLGMTL 15 (137)
T ss_dssp CCEEEEEEEEEEEE
T ss_pred CccEEEEEEeeEEE
Confidence 49999999998754
No 7
>4dbb_A Amyloid beta A4 precursor protein-binding family 1; X11S/mints, PTB domain, chimera protein, protein transport; HET: IPA GOL; 1.90A {Rattus norvegicus}
Probab=67.52 E-value=1.6 Score=28.13 Aligned_cols=14 Identities=29% Similarity=0.415 Sum_probs=12.3
Q ss_pred hcceEeeeechhhH
Q psy6845 30 HGITFQAKTRQKNK 43 (67)
Q Consensus 30 HGI~FqAKyig~~~ 43 (67)
+|+.|.|||.|.-+
T Consensus 7 ~Gv~F~vkYLGs~e 20 (162)
T 4dbb_A 7 DGIIFAANYLGSTQ 20 (162)
T ss_dssp CEEEEEEEEEEEEE
T ss_pred CCcEEEeEEEeEEE
Confidence 79999999999843
No 8
>1p3r_A Disabled homolog 2; PTB, signaling protein; 2.10A {Mus musculus} SCOP: b.55.1.2 PDB: 1m7e_A
Probab=66.11 E-value=2.9 Score=26.82 Aligned_cols=14 Identities=21% Similarity=0.437 Sum_probs=11.8
Q ss_pred hcceEeeeechhhH
Q psy6845 30 HGITFQAKTRQKNK 43 (67)
Q Consensus 30 HGI~FqAKyig~~~ 43 (67)
.|+.|.|||+|+..
T Consensus 15 ~gv~f~vkYLGs~~ 28 (160)
T 1p3r_A 15 DGVKYKAKLIGIDD 28 (160)
T ss_dssp TCEEEEEEEEEEEE
T ss_pred CCeEEEEEeceeEE
Confidence 48999999999754
No 9
>2ela_A Adapter protein containing PH domain, PTB domain and leucine zipper motif 1; APPL, cell cycle; 2.00A {Homo sapiens}
Probab=54.11 E-value=5 Score=26.31 Aligned_cols=30 Identities=13% Similarity=-0.002 Sum_probs=12.6
Q ss_pred ccccccCCCccccccCCchhhhhhcceEeeeechhhH
Q psy6845 7 QYNLVQQDEYDTRIPMHSEEAFQHGITFQAKTRQKNK 43 (67)
Q Consensus 7 ~YnLV~dD~~D~RIPLHnEeAFqHGI~FqAKyig~~~ 43 (67)
.--||+++..|.+=++- |+.|.|||.|+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~-------~~~f~vkYLGs~e 40 (175)
T 2ela_A 11 SSGLVPRGSHMTEDSIL-------HQLFIVRFLGSME 40 (175)
T ss_dssp --------------CCC-------CEEEEEEEEEEEE
T ss_pred cCCccCCCCCCCccccc-------cceEEEEcceEEE
Confidence 34577766666654442 6999999999864
No 10
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=50.49 E-value=3.4 Score=25.07 Aligned_cols=12 Identities=17% Similarity=0.241 Sum_probs=10.0
Q ss_pred CCCccccccCCc
Q psy6845 13 QDEYDTRIPMHS 24 (67)
Q Consensus 13 dD~~D~RIPLHn 24 (67)
+..+|+|||.+=
T Consensus 16 ~~~~DLRIP~~~ 27 (81)
T 2bps_A 16 GSVFDLRLSDYH 27 (81)
T ss_dssp CCEEEEEEETTS
T ss_pred CceEEEECCCch
Confidence 568999999874
No 11
>2e2d_C TIMP-2, metalloproteinase inhibitor 2; matrix metalloproteinase/MMP, collagenase, tissue inhibitor of metalloproteinases/TIMP, complex, flexibility; 2.00A {Bos taurus} SCOP: b.40.3.1 PDB: 1bqq_T 1buv_T 1br9_A 1gxd_C 2tmp_A
Probab=43.04 E-value=11 Score=25.41 Aligned_cols=24 Identities=33% Similarity=0.601 Sum_probs=20.8
Q ss_pred ccCCchhhh-hhcceEeeeechhhH
Q psy6845 20 IPMHSEEAF-QHGITFQAKTRQKNK 43 (67)
Q Consensus 20 IPLHnEeAF-qHGI~FqAKyig~~~ 43 (67)
.|.|..+|| +--+.|.||+++...
T Consensus 4 ~~~hPq~afC~aD~VirakVl~~~~ 28 (180)
T 2e2d_C 4 SPVHPQQAFCNADIVIRAKAVNKKE 28 (180)
T ss_dssp CCCCHHHHHHHCSEEEEEEEEEEEE
T ss_pred CCCChHHHhhhCCEEEEEEEEeeee
Confidence 489999999 778999999998643
No 12
>2ej8_A DCC-interacting protein 13 alpha; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.84A {Homo sapiens}
Probab=30.00 E-value=16 Score=23.14 Aligned_cols=13 Identities=8% Similarity=-0.074 Sum_probs=11.0
Q ss_pred cceEeeeechhhH
Q psy6845 31 GITFQAKTRQKNK 43 (67)
Q Consensus 31 GI~FqAKyig~~~ 43 (67)
|+.|.|||.|+.+
T Consensus 15 ~~~f~vkYLGs~e 27 (160)
T 2ej8_A 15 HQLFIVRFLGSME 27 (160)
T ss_dssp EEEEEEEEEEEEE
T ss_pred ccEEEEEeeeEEE
Confidence 5899999999854
No 13
>2lhu_A Mybpc3 protein; cardiac, structural protein; NMR {Mus musculus}
Probab=24.95 E-value=15 Score=24.69 Aligned_cols=23 Identities=39% Similarity=0.512 Sum_probs=12.7
Q ss_pred hhhhhcceEeeeechhhHHHHHHHHH
Q psy6845 26 EAFQHGITFQAKTRQKNKKEEKKKKE 51 (67)
Q Consensus 26 eAFqHGI~FqAKyig~~~~~~~~~~~ 51 (67)
-|||+||+ =|+|-.++-.+.|||
T Consensus 99 IAf~YGIT---DlRGMLKrLk~mKKE 121 (124)
T 2lhu_A 99 IAFQHGVT---DLRGMLKRLKGMKQD 121 (124)
T ss_dssp HHHHTTCC---CHHHHHHHHC-----
T ss_pred HHHHhCcH---HHHHHHHHHHHhhhh
Confidence 48999997 466665555554444
No 14
>4dx8_A Integrin beta-1-binding protein 1; protein-protien complex, PTB domain, nudix fold, protein-Pro interaction, membrane, nucleus, protein binding; 2.54A {Homo sapiens} PDB: 4dx9_A
Probab=23.79 E-value=19 Score=24.79 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=18.5
Q ss_pred cccCCCcc--ccccCCchh-------hhhhcceEee
Q psy6845 10 LVQQDEYD--TRIPMHSEE-------AFQHGITFQA 36 (67)
Q Consensus 10 LV~dD~~D--~RIPLHnEe-------AFqHGI~FqA 36 (67)
|.+.|+.| .|||||.=. +|.||=+|-|
T Consensus 75 l~~~d~~dvl~RipL~~I~~~v~YdDg~g~g~~vla 110 (154)
T 4dx8_A 75 VSTSDQYDVLHRHALYLIIRMVCYDDGLGAGKSLLA 110 (154)
T ss_dssp EEETTSCCEEEEEEGGGEEEEEEEECCSSSCCEEEE
T ss_pred EEeccCcccccchhHHHhhhheeeccccccccEEEE
Confidence 45567888 699999754 5556656543
No 15
>1av3_A Kappa-PVIIA; kappa-conotoxin, potassium channel blocker, cystine knot; HET: HYP; NMR {Conus purpurascens} SCOP: g.3.6.1 PDB: 1kcp_A*
Probab=23.19 E-value=16 Score=19.07 Aligned_cols=11 Identities=55% Similarity=1.084 Sum_probs=7.4
Q ss_pred ccccCCchhhhhh
Q psy6845 18 TRIPMHSEEAFQH 30 (67)
Q Consensus 18 ~RIPLHnEeAFqH 30 (67)
+||| |.-.|||
T Consensus 1 crip--nqkcfqh 11 (27)
T 1av3_A 1 CRIP--NQKCFQH 11 (27)
T ss_dssp CBCT--TSBCCGG
T ss_pred CCCC--cHHHHHH
Confidence 4676 5667777
No 16
>2gjf_A Designed protein; procarboxypeptidase, de novo protein; NMR {}
Probab=22.82 E-value=42 Score=18.41 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=18.4
Q ss_pred CCccccccCCchhhh-----hhcceEee
Q psy6845 14 DEYDTRIPMHSEEAF-----QHGITFQA 36 (67)
Q Consensus 14 D~~D~RIPLHnEeAF-----qHGI~FqA 36 (67)
...|++||-+.-.+| ++||.|+-
T Consensus 47 ~~vdI~V~p~~~~~f~~~L~~~~I~y~V 74 (78)
T 2gjf_A 47 QPVVILIPSDMVEWFLEMLKAKGIPFTV 74 (78)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECHHHHHHHHHHHHHCCCcEEE
Confidence 467999999998777 56888875
No 17
>1vjq_A Designed protein; structural genomics, engineered protein, PSI, protein struct initiative, structural genomics of pathogenic protozoa CONS SGPP; 2.10A {} SCOP: k.43.1.1
Probab=21.86 E-value=35 Score=18.69 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=19.8
Q ss_pred CCccccccCCchhhh-----hhcceEeeee
Q psy6845 14 DEYDTRIPMHSEEAF-----QHGITFQAKT 38 (67)
Q Consensus 14 D~~D~RIPLHnEeAF-----qHGI~FqAKy 38 (67)
...|.+||-+.-.+| +|||.|+-.-
T Consensus 39 ~~~di~V~p~~~~~f~~~L~~~~i~~~v~i 68 (79)
T 1vjq_A 39 QPVVILIPSDMVEWFLEMLKAKGIPFTVYV 68 (79)
T ss_dssp CCEEEEECGGGHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEECHHHHHHHHHHHHHCCCcEEEEe
Confidence 467899999998776 5799998654
No 18
>3iu4_H CHP3 FAB heavy chain; antibody, ganglioside, idiotype, immune system; 1.75A {Mus musculus} PDB: 1ibg_H* 3iy6_B
Probab=21.84 E-value=19 Score=22.93 Aligned_cols=8 Identities=50% Similarity=1.165 Sum_probs=0.0
Q ss_pred ccccCCch
Q psy6845 18 TRIPMHSE 25 (67)
Q Consensus 18 ~RIPLHnE 25 (67)
-|+|||.|
T Consensus 255 ~~~~~~~~ 262 (263)
T 3iu4_H 255 PRLPLHPE 262 (263)
T ss_dssp --------
T ss_pred cCCCCCCC
Confidence 47788876
No 19
>3vcm_P Prorenin; aspartic proteases, hydrolase; HET: NAG; 2.93A {Homo sapiens}
Probab=21.23 E-value=14 Score=19.19 Aligned_cols=8 Identities=25% Similarity=0.260 Sum_probs=6.1
Q ss_pred ccccCCch
Q psy6845 18 TRIPMHSE 25 (67)
Q Consensus 18 ~RIPLHnE 25 (67)
.|||||--
T Consensus 9 ~RIPL~k~ 16 (43)
T 3vcm_P 9 KRIFLKRM 16 (43)
T ss_dssp EEEEEEEC
T ss_pred eEEeeeec
Confidence 59999853
No 20
>1jzp_A Skeletal dihydropydrine receptor; alpha helical peptide, DHPR, D-isomer, signaling protein; NMR {Synthetic} SCOP: j.68.1.1
Probab=21.08 E-value=43 Score=17.13 Aligned_cols=10 Identities=50% Similarity=0.743 Sum_probs=5.2
Q ss_pred HHHHhhhhcc
Q psy6845 52 EEKKKREKMV 61 (67)
Q Consensus 52 ~~~~~~~~~~ 61 (67)
+|.++|++|.
T Consensus 8 eEe~kr~k~~ 17 (26)
T 1jzp_A 8 AEERKRRKMS 17 (26)
T ss_pred HHHHHHHHHH
Confidence 4445566644
No 21
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=20.77 E-value=63 Score=17.71 Aligned_cols=19 Identities=42% Similarity=0.265 Sum_probs=12.5
Q ss_pred echhhHHHHHHHHHHHHHh
Q psy6845 38 TRQKNKKEEKKKKEEEKKK 56 (67)
Q Consensus 38 yig~~~~~~~~~~~~~~~~ 56 (67)
++|+.-.|-||-|||.||.
T Consensus 9 wvggtpeelkklkeeakka 27 (36)
T 2ki0_A 9 WVGGTPEELKKLKEEAKKA 27 (36)
T ss_dssp CBCCCHHHHHHHHHHHHHH
T ss_pred EecCCHHHHHHHHHHHHhc
Confidence 5666666667777766654
No 22
>1tzs_P Activation peptide from cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=20.38 E-value=18 Score=16.59 Aligned_cols=8 Identities=25% Similarity=0.779 Sum_probs=5.6
Q ss_pred ccccCCch
Q psy6845 18 TRIPMHSE 25 (67)
Q Consensus 18 ~RIPLHnE 25 (67)
.||||+--
T Consensus 4 ~rIpL~K~ 11 (35)
T 1tzs_P 4 HRVPLRRH 11 (35)
T ss_pred EEEEeEEc
Confidence 38888853
No 23
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=20.28 E-value=22 Score=21.38 Aligned_cols=8 Identities=75% Similarity=0.875 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q psy6845 44 KEEKKKKE 51 (67)
Q Consensus 44 ~~~~~~~~ 51 (67)
|.|+|+|+
T Consensus 6 ~~~~~~k~ 13 (196)
T 3dtp_E 6 KKEKKKKS 13 (196)
T ss_dssp HHHTTSHH
T ss_pred cccccccc
Confidence 33333333
Done!