RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy6845
         (67 letters)



>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger,
          histone binding, chromosomal protein, DNA damag repair,
          DNA-binding, methylation; HET: DNA; 2.29A {Homo
          sapiens} PDB: 3a1a_A*
          Length = 159

 Score = 26.3 bits (57), Expect = 0.70
 Identities = 8/27 (29%), Positives = 16/27 (59%), Gaps = 1/27 (3%)

Query: 36 AKTRQKNKKEEKKKKEEEKKKREKMVH 62
          A+T+Q   ++    K   K+ RE++V+
Sbjct: 1  ARTKQ-TARKSTGGKAPRKQLRERLVY 26


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 26.3 bits (57), Expect = 0.77
 Identities = 4/24 (16%), Positives = 11/24 (45%)

Query: 37  KTRQKNKKEEKKKKEEEKKKREKM 60
           K R++ +K  ++     K   ++ 
Sbjct: 89  KWREEQRKRLQELDAASKVMEQEW 112



 Score = 23.2 bits (49), Expect = 8.6
 Identities = 7/25 (28%), Positives = 13/25 (52%)

Query: 35  QAKTRQKNKKEEKKKKEEEKKKREK 59
           Q K  Q+     K  ++E ++K +K
Sbjct: 94  QRKRLQELDAASKVMEQEWREKAKK 118



 Score = 23.2 bits (49), Expect = 9.4
 Identities = 4/24 (16%), Positives = 12/24 (50%)

Query: 35  QAKTRQKNKKEEKKKKEEEKKKRE 58
           Q++  +KNK   +   +   ++ +
Sbjct: 127 QSEQVEKNKINNRIADKAFYQQPD 150


>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins,
          transcription-activato; 2.27A {Mus musculus}
          Length = 387

 Score = 25.4 bits (55), Expect = 1.3
 Identities = 7/25 (28%), Positives = 15/25 (60%)

Query: 36 AKTRQKNKKEEKKKKEEEKKKREKM 60
          A+ + + K   +   + EK++R+KM
Sbjct: 4  AEHQGRIKNAREAHSQIEKRRRDKM 28


>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain,
          long alpha helix, dimerisation VIA helical INTE
          isomerase; 2.41A {Legionella pneumophila} SCOP:
          d.26.1.1 PDB: 2uz5_A 2vcd_A*
          Length = 213

 Score = 25.0 bits (55), Expect = 1.9
 Identities = 10/40 (25%), Positives = 15/40 (37%)

Query: 20 IPMHSEEAFQHGITFQAKTRQKNKKEEKKKKEEEKKKREK 59
          + +  ++       FQ     K   E  KK +E K K E 
Sbjct: 51 LALTEQQMKDVLNKFQKDLMAKRTAEFNKKADENKVKGEA 90


>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach
          chloroplast ribosome, ribonucleoprotein particle,
          macromolecular complex; 9.40A {Spinacea oleracea} SCOP:
          i.1.1.1
          Length = 140

 Score = 23.8 bits (52), Expect = 5.3
 Identities = 6/36 (16%), Positives = 12/36 (33%), Gaps = 5/36 (13%)

Query: 36 AKTRQKNKKEEKKKKEEEKKKREK-----MVHVPST 66
          AK   K       +    K    +     ++HV ++
Sbjct: 2  AKPIPKIGSRRNGRISSRKSASARKIPKGVIHVQAS 37


>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA
           splicing, adenine, mRNA processing, nucleus,
           phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo
           sapiens} PDB: 2f9d_A 2f9j_A 2fho_B
          Length = 115

 Score = 23.1 bits (50), Expect = 7.7
 Identities = 7/24 (29%), Positives = 13/24 (54%)

Query: 36  AKTRQKNKKEEKKKKEEEKKKREK 59
               +  +K + KKKEE+ K  ++
Sbjct: 82  YNANRAFQKMDTKKKEEQLKLLKE 105


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.304    0.120    0.319 

Gapped
Lambda     K      H
   0.267   0.0557    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 890,977
Number of extensions: 38308
Number of successful extensions: 352
Number of sequences better than 10.0: 1
Number of HSP's gapped: 310
Number of HSP's successfully gapped: 85
Length of query: 67
Length of database: 6,701,793
Length adjustment: 38
Effective length of query: 29
Effective length of database: 5,640,795
Effective search space: 163583055
Effective search space used: 163583055
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 51 (23.8 bits)