Query psy6849
Match_columns 439
No_of_seqs 187 out of 603
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 19:57:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6849.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6849hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z9e_A PC4 and SFRS1 interacti 100.0 6.1E-37 2.1E-41 268.8 6.8 100 296-413 2-101 (127)
2 2b4j_C PC4 and SFRS1 interacti 100.0 6.3E-36 2.2E-40 252.6 9.6 94 296-407 2-95 (98)
3 3qby_A Hepatoma-derived growth 99.9 2.9E-28 9.9E-33 204.4 7.0 87 5-95 3-91 (94)
4 1ri0_A Hepatoma-derived growth 99.9 7E-27 2.4E-31 201.2 7.9 88 5-96 17-106 (110)
5 4fu6_A PC4 and SFRS1-interacti 99.9 2.2E-26 7.5E-31 207.8 6.5 84 4-87 19-104 (153)
6 2daq_A WHSC1L1 protein, isofor 99.9 8.9E-24 3.1E-28 180.8 6.7 85 6-90 7-100 (110)
7 3llr_A DNA (cytosine-5)-methyl 99.9 3E-23 1E-27 188.4 5.0 87 6-92 15-106 (154)
8 1khc_A DNA cytosine-5 methyltr 99.9 9.9E-23 3.4E-27 183.6 4.2 88 5-92 9-101 (147)
9 2l89_A PWWP domain-containing 99.8 3E-22 1E-26 171.7 4.3 90 5-98 3-102 (108)
10 2gfu_A DNA mismatch repair pro 99.8 8.4E-22 2.9E-26 174.3 7.3 88 6-93 21-120 (134)
11 1h3z_A Hypothetical 62.8 kDa p 99.8 4.5E-21 1.5E-25 164.1 5.5 84 4-87 3-98 (109)
12 3pfs_A Bromodomain and PHD fin 99.7 6.7E-17 2.3E-21 147.1 6.8 60 6-65 35-122 (158)
13 3l42_A Peregrin; transcription 99.6 2.1E-16 7.1E-21 139.8 8.5 84 6-89 4-122 (130)
14 1wjt_A Transcription elongatio 97.7 5.4E-05 1.8E-09 64.4 6.3 80 297-397 9-88 (103)
15 3pmi_A PWWP domain-containing 96.9 0.00051 1.8E-08 60.4 3.2 75 5-83 2-82 (134)
16 3p8d_A Medulloblastoma antigen 96.8 0.0007 2.4E-08 53.5 3.5 59 2-65 1-59 (67)
17 3qii_A PHD finger protein 20; 96.6 0.0013 4.5E-08 54.2 3.4 57 5-66 19-75 (85)
18 1pqv_S STP-alpha, transcriptio 96.2 0.011 3.9E-07 58.6 8.3 75 299-397 3-78 (309)
19 2ldm_A Uncharacterized protein 94.7 0.0017 6E-08 53.0 0.0 59 2-65 1-59 (81)
20 3s6w_A Tudor domain-containing 93.8 0.051 1.7E-06 40.2 3.6 52 7-61 1-53 (54)
21 1mhn_A SurviVal motor neuron p 93.5 0.056 1.9E-06 40.8 3.5 55 6-63 2-57 (59)
22 4a4f_A SurviVal of motor neuro 93.4 0.054 1.8E-06 41.6 3.2 57 5-64 6-63 (64)
23 2equ_A PHD finger protein 20-l 92.3 0.12 4E-06 41.4 3.9 56 5-65 7-62 (74)
24 2d9t_A Tudor domain-containing 91.9 0.14 4.7E-06 40.9 3.9 57 5-64 7-64 (78)
25 3pnw_C Tudor domain-containing 91.6 0.14 4.7E-06 40.9 3.6 56 6-64 16-72 (77)
26 1g5v_A SurviVal motor neuron p 91.5 0.14 4.9E-06 42.1 3.7 56 6-64 9-65 (88)
27 2l8d_A Lamin-B receptor; DNA b 87.5 0.45 1.5E-05 37.3 3.5 60 1-64 3-63 (66)
28 3fdr_A Tudor and KH domain-con 85.1 0.62 2.1E-05 37.7 3.4 56 6-65 26-82 (94)
29 2diq_A Tudor and KH domain-con 84.6 0.99 3.4E-05 37.6 4.5 55 6-64 31-86 (110)
30 2lrq_A Protein MRG15, NUA4 com 84.4 0.21 7.1E-06 40.9 0.0 57 6-64 11-69 (85)
31 2f5k_A MORF-related gene 15 is 83.0 0.39 1.3E-05 40.6 1.3 57 6-64 21-79 (102)
32 2k3y_A Chromatin modification- 82.2 0.5 1.7E-05 42.0 1.8 63 1-64 3-104 (136)
33 2eqm_A PHD finger protein 20-l 82.1 1.3 4.4E-05 36.3 4.1 56 6-64 18-77 (88)
34 4hcz_A PHD finger protein 1; p 82.0 0.94 3.2E-05 34.7 3.0 53 6-62 2-54 (58)
35 2dig_A Lamin-B receptor; tudor 80.2 1.3 4.6E-05 34.8 3.3 54 6-63 11-65 (68)
36 2eqj_A Metal-response element- 78.0 2.2 7.6E-05 33.5 4.0 54 6-63 12-65 (66)
37 3h8z_A FragIle X mental retard 77.4 1.1 3.7E-05 39.3 2.3 53 6-63 59-118 (128)
38 3sd4_A PHD finger protein 20; 75.3 2.2 7.5E-05 33.0 3.3 54 6-62 11-68 (69)
39 2eko_A Histone acetyltransfera 70.2 5.1 0.00017 32.8 4.5 55 5-60 7-67 (87)
40 3oa6_A MALE-specific lethal 3 67.0 2.2 7.7E-05 36.5 1.8 60 5-64 17-86 (110)
41 3m9p_A MALE-specific lethal 3 65.9 2.6 9E-05 36.1 2.0 59 6-64 18-86 (110)
42 2qqr_A JMJC domain-containing 65.6 3.1 0.00011 36.0 2.5 54 6-63 4-57 (118)
43 3m9q_A Protein MALE-specific l 64.9 2.4 8.1E-05 35.8 1.5 60 5-64 17-86 (101)
44 2lcc_A AT-rich interactive dom 63.7 1.8 6.3E-05 34.5 0.6 58 5-63 3-65 (76)
45 2wac_A CG7008-PA; unknown func 62.0 5.1 0.00017 36.2 3.3 53 7-64 51-104 (218)
46 2hqx_A P100 CO-activator tudor 60.0 5.3 0.00018 37.2 3.1 55 6-64 64-118 (246)
47 1wgs_A MYST histone acetyltran 59.6 3.9 0.00013 35.8 2.0 55 6-60 11-68 (133)
48 2m0o_A PHD finger protein 1; t 56.4 12 0.00043 30.1 4.2 52 6-61 25-76 (79)
49 2yrv_A AT-rich interactive dom 56.0 9.7 0.00033 32.9 3.8 79 10-92 13-96 (117)
50 1ssf_A Transformation related 55.1 8.4 0.00029 34.8 3.4 48 7-59 8-56 (156)
51 2ro0_A Histone acetyltransfera 53.1 7.6 0.00026 32.1 2.6 53 6-60 22-76 (92)
52 2xdp_A Lysine-specific demethy 50.7 5.7 0.00019 34.6 1.5 55 5-63 4-58 (123)
53 2xk0_A Polycomb protein PCL; t 50.7 16 0.00053 28.9 3.8 52 6-63 14-65 (69)
54 3e9g_A Chromatin modification- 49.3 16 0.00054 32.1 4.1 63 1-64 1-102 (130)
55 2e5q_A PHD finger protein 19; 48.1 25 0.00084 27.3 4.5 55 5-63 5-59 (63)
56 2bud_A Males-absent on the fir 48.0 18 0.0006 30.1 4.0 58 7-64 14-75 (92)
57 2rnz_A Histone acetyltransfera 47.7 12 0.00042 31.0 3.0 53 6-60 24-78 (94)
58 2eqk_A Tudor domain-containing 44.2 21 0.00072 29.2 3.9 58 5-66 19-77 (85)
59 3ntk_A Maternal protein tudor; 40.0 20 0.00069 31.7 3.5 80 6-91 46-135 (169)
60 1vdy_A Hypothetical protein (R 39.7 1E+02 0.0036 27.0 8.0 78 300-389 45-126 (140)
61 2e5p_A Protein PHF1, PHD finge 35.0 43 0.0015 26.3 4.1 55 5-63 7-61 (68)
62 4b9w_A TDRD1, tudor domain-con 31.9 34 0.0012 30.9 3.7 57 6-66 64-121 (201)
63 3bdl_A Staphylococcal nuclease 30.8 27 0.00092 36.8 3.1 57 6-66 410-466 (570)
64 4b9x_A TDRD1, tudor domain-con 29.4 37 0.0013 31.3 3.5 55 7-65 65-120 (226)
65 3q6m_A Heat shock protein HSP 25.6 25 0.00087 36.6 1.8 51 332-412 105-156 (448)
66 2lkt_A Retinoic acid receptor 24.6 36 0.0012 28.5 2.3 28 1-29 1-28 (125)
67 3pry_A Heat shock protein HSP 24.0 23 0.0008 34.4 1.1 23 332-358 105-127 (268)
No 1
>1z9e_A PC4 and SFRS1 interacting protein 2; heat repeat-like, ledgf, protein binding/transcription complex; NMR {Homo sapiens} SCOP: a.48.4.1
Probab=100.00 E-value=6.1e-37 Score=268.79 Aligned_cols=100 Identities=27% Similarity=0.530 Sum_probs=81.8
Q ss_pred hhhhhHHHHHHHHHHHhhCCCCCCHHHHHHHHHhhcCCCCChHHhhhCchHHHHHHHhhhhccCccccccCHHHHHHhhh
Q psy6849 296 LKLEVCILDIDLRIKDSIGLEHADCDECLKALDDLINLPITPLVLKKHPEIVDTCRRLQRYTGNIAEWTMTEEEAEVFTQ 375 (439)
Q Consensus 296 L~~E~~l~~l~~~ik~sL~~~~~dv~~cl~aLdel~~L~vt~~mL~k~~e~V~tirklrry~gn~~~w~~~~~~~~~f~~ 375 (439)
.++|++|++||++|++||+++++||.+||++||+|.+|+||++||+|||+||+||||||||+||
T Consensus 2 ~s~E~~L~~L~~~Ik~~L~v~~~Dv~kCl~~Leel~~l~vT~~mL~Rnpe~V~TlkklRrY~gn---------------- 65 (127)
T 1z9e_A 2 SSMDSRLQRIHAEIKNSLKIDNLDVNRCIEALDELASLQVTMQQAQKHTEMITTLKKIRRFKVS---------------- 65 (127)
T ss_dssp -CHHHHHHHHHHHHHHHTCGGGCCHHHHHHHHHHHHHSCCCHHHHGGGHHHHHHHHHHTTCTTC----------------
T ss_pred ccHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHccccccHHHHhhChHHHHHHHHHHHHhcc----------------
Confidence 4689999999999999999999999999999999999999999999999999999999999997
Q ss_pred hHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHHHHHH
Q psy6849 376 KASQVRAKADHVYNKFKNLFTVPAGETFWDTFSKQLVT 413 (439)
Q Consensus 376 ~a~~Ir~kA~~ly~kfK~~F~~~eg~~Fw~~F~~~v~~ 413 (439)
+.||++|++|||+||+||++++|++||++||..+-.
T Consensus 66 --q~Ir~kA~~iY~kFK~lf~~geg~~fw~~~~~~~~~ 101 (127)
T 1z9e_A 66 --QVIMEKSTMLYNKFKNMFLVGEGDSVITQVLNKSLA 101 (127)
T ss_dssp --SSHHHHHHHHHHHHHHHHHC----------------
T ss_pred --HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 789999999999999999999999999999998643
No 2
>2b4j_C PC4 and SFRS1 interacting protein; HIV, integration, transcription, viral protein, recombinatio; 2.02A {Homo sapiens} SCOP: a.48.4.1 PDB: 3f9k_C 3hpg_G 3u88_C* 3hph_E
Probab=100.00 E-value=6.3e-36 Score=252.62 Aligned_cols=94 Identities=29% Similarity=0.562 Sum_probs=79.2
Q ss_pred hhhhhHHHHHHHHHHHhhCCCCCCHHHHHHHHHhhcCCCCChHHhhhCchHHHHHHHhhhhccCccccccCHHHHHHhhh
Q psy6849 296 LKLEVCILDIDLRIKDSIGLEHADCDECLKALDDLINLPITPLVLKKHPEIVDTCRRLQRYTGNIAEWTMTEEEAEVFTQ 375 (439)
Q Consensus 296 L~~E~~l~~l~~~ik~sL~~~~~dv~~cl~aLdel~~L~vt~~mL~k~~e~V~tirklrry~gn~~~w~~~~~~~~~f~~ 375 (439)
..+|++|++||++||+||+++++||.+||++||+|.+|++|++||+|||+||+||||||||+||
T Consensus 2 ~~~E~~l~~L~~~ik~~L~~~~~Dv~kcl~~L~~l~~l~~T~~mL~rnpe~V~t~kklRry~g~---------------- 65 (98)
T 2b4j_C 2 SSMDSRLQRIHAEIKNSLKIDNLDVNRCIEALDELASLQVTMQQAQKHTEMITTLKKIRRFKVS---------------- 65 (98)
T ss_dssp CHHHHHHHHHHHHHHHHTCTTSCCHHHHHHHHHHHHTCCCCHHHHHTTHHHHHHHHHHTTCTTC----------------
T ss_pred ccHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcccccHHHHhhChHHHHHHHHHHHHhch----------------
Confidence 3689999999999999999999999999999999999999999999999999999999999995
Q ss_pred hHHHHHHHHHHHHHHhhhhcccCCCcchHHHH
Q psy6849 376 KASQVRAKADHVYNKFKNLFTVPAGETFWDTF 407 (439)
Q Consensus 376 ~a~~Ir~kA~~ly~kfK~~F~~~eg~~Fw~~F 407 (439)
+.||++|++|||+||+||++|||.+||+.-
T Consensus 66 --q~Ir~kA~~iY~kfK~~f~~~eg~~~~~~~ 95 (98)
T 2b4j_C 66 --QVIMEKSTMLYNKFKNMFLVGEGDSVITQV 95 (98)
T ss_dssp --HHHHHHHHHHHHHHHHC-------------
T ss_pred --HHHHHHHHHHHHHHHHHHhcCCCchHHHHH
Confidence 899999999999999999999999999864
No 3
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural genomics consortium, SGC, protein binding; HET: M3L; 1.95A {Homo sapiens} SCOP: b.34.9.2 PDB: 3qj6_A* 3eae_A 1n27_A
Probab=99.95 E-value=2.9e-28 Score=204.43 Aligned_cols=87 Identities=52% Similarity=0.880 Sum_probs=82.0
Q ss_pred cCCCccCcEEEEeccCCCCCCceecCCCC--CCCCCceEEEEEecCCceeeecCCCcccchhhhhhhCCCCChHHHHHHH
Q psy6849 5 ERKFKTNDKVFAKVRGYPPWPARIEGLAD--ETPNRLKYHIFFYGTRETGICRQDELFPYTEFKDKYGKGVKRKFFTEAL 82 (439)
Q Consensus 5 ~~~fk~GDLVWAKvkGYP~WPArV~~~pe--vk~~~~ky~V~FFGt~e~Awv~~k~L~Py~e~kekf~K~~Krk~F~eAl 82 (439)
...|++||||||||+|||||||+|++.++ +++..++|+|+|||||++|||.+++|+||.+++++|.+++|+++|++||
T Consensus 3 p~~f~~GdlVwaK~~g~p~WPa~V~~~~~~~~k~~~~~~~V~FFGt~~~awv~~~~l~pf~~~~~~~~k~~k~k~F~~Al 82 (94)
T 3qby_A 3 PHAFKPGDLVFAKMKGYPHWPARIDDIADGAVKPPPNKYPIFFFGTHETAFLGPKDLFPYDKCKDKYGKPNKRKGFNEGL 82 (94)
T ss_dssp CCCCCTTCEEEECCTTSCCEEEEECCCCTTSBCCCTTCEEEEETTTCCEEEECGGGEEEHHHHHHHHCSCCSSTTHHHHH
T ss_pred CCcCccCCEEEEecCCCCCCCEEEeecccccccCCCCEEEEEEEcCCCcceEchhHeeEHHHHHHHHccCccHHHHHHHH
Confidence 47899999999999999999999999876 3567899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCc
Q psy6849 83 QEIECDFGTPESR 95 (439)
Q Consensus 83 ~Eaee~l~n~~~~ 95 (439)
+||+ |+|++
T Consensus 83 ~Eie----n~p~~ 91 (94)
T 3qby_A 83 WEIQ----NNPHA 91 (94)
T ss_dssp HHHH----HCTTS
T ss_pred HHHh----hCCCC
Confidence 9999 99987
No 4
>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain, heparin-binding, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A
Probab=99.93 E-value=7e-27 Score=201.24 Aligned_cols=88 Identities=45% Similarity=0.849 Sum_probs=82.3
Q ss_pred cCCCccCcEEEEeccCCCCCCceecCCCCC--CCCCceEEEEEecCCceeeecCCCcccchhhhhhhCCCCChHHHHHHH
Q psy6849 5 ERKFKTNDKVFAKVRGYPPWPARIEGLADE--TPNRLKYHIFFYGTRETGICRQDELFPYTEFKDKYGKGVKRKFFTEAL 82 (439)
Q Consensus 5 ~~~fk~GDLVWAKvkGYP~WPArV~~~pev--k~~~~ky~V~FFGt~e~Awv~~k~L~Py~e~kekf~K~~Krk~F~eAl 82 (439)
...|++||||||||+|||||||+|+++|+. ++..+.|+|+|||++++|||.+++|+||.+++++|.+++|+++|++||
T Consensus 17 ~~~~~~GdlVwaK~kGyP~WPa~V~~~p~~~~k~~~~~~~V~FFGt~~~awv~~~~l~pf~~~~~k~~~~~K~k~f~~Al 96 (110)
T 1ri0_A 17 QKEYKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHETAFLGPKDLFPYEESKEKFGKPNKRKGFSEGL 96 (110)
T ss_dssp SSSCCTTCEEEEEETTEEEEEEEEECCCSSSSCCCSSCEEEEETTTTEEEEECSTTEECHHHHHHHCCCCCCCHHHHHHH
T ss_pred cCCCCCCCEEEEEeCCCCCCCEEEecccHhhcCCCCCEEEEEEecCCCEEEECHHHccchhhhHHHHccccccHHHHHHH
Confidence 368999999999999999999999998763 567889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCcC
Q psy6849 83 QEIECDFGTPESRA 96 (439)
Q Consensus 83 ~Eaee~l~n~~~~~ 96 (439)
+||+ |+|+++
T Consensus 97 ~Eie----~~p~v~ 106 (110)
T 1ri0_A 97 WEIE----NNPTVK 106 (110)
T ss_dssp HHHH----TCSSCC
T ss_pred HHHH----hCcCCC
Confidence 9999 999986
No 5
>4fu6_A PC4 and SFRS1-interacting protein; structural genomics consortium, SGC, transcription; 2.10A {Homo sapiens} PDB: 2b8a_A 2nlu_A
Probab=99.92 E-value=2.2e-26 Score=207.76 Aligned_cols=84 Identities=49% Similarity=0.892 Sum_probs=77.4
Q ss_pred ccCCCccCcEEEEeccCCCCCCceecCCCCC--CCCCceEEEEEecCCceeeecCCCcccchhhhhhhCCCCChHHHHHH
Q psy6849 4 VERKFKTNDKVFAKVRGYPPWPARIEGLADE--TPNRLKYHIFFYGTRETGICRQDELFPYTEFKDKYGKGVKRKFFTEA 81 (439)
Q Consensus 4 ~~~~fk~GDLVWAKvkGYP~WPArV~~~pev--k~~~~ky~V~FFGt~e~Awv~~k~L~Py~e~kekf~K~~Krk~F~eA 81 (439)
+...|++||||||||+|||||||+|+++++. ++..++|+|+|||+++||||.+++|+||.+++.+|.+++|+++|++|
T Consensus 19 ~~~~f~~GdlVwaK~~g~p~WPa~V~~~~~~~~~~~~~~~~V~FfG~~~~awv~~~~l~~f~e~~~~~~k~~k~k~f~~A 98 (153)
T 4fu6_A 19 MTRDFKPGDLIFAKMKGYPHWPARVDEVPDGAVKPPTNKLPIFFFGTHETAFLGPKDIFPYSENKEKYGKPNKRKGFNEG 98 (153)
T ss_dssp SGGGCCTTCEEEECCTTSCCEEEEECCCC---CCCCTTCEEEEETTTCCEEEECGGGEEEHHHHHHHHCSCCSSTTHHHH
T ss_pred cccCCCCCCEEEEeCCCCCCCCEEEeEchhhccCCCCCEEEEEecCCCCeEEeCHHHccChHhHHHHHhcccchHHHHHH
Confidence 5688999999999999999999999998873 55678999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q psy6849 82 LQEIEC 87 (439)
Q Consensus 82 l~Eaee 87 (439)
|+||+.
T Consensus 99 v~Eie~ 104 (153)
T 4fu6_A 99 LWEIDN 104 (153)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999983
No 6
>2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2
Probab=99.89 E-value=8.9e-24 Score=180.79 Aligned_cols=85 Identities=27% Similarity=0.481 Sum_probs=75.1
Q ss_pred CCCccCcEEEEeccCCCCCCceecCCCCC-------CCCCceEEEEEecCCceeeecCCCcccchhhhhhh--CCCCChH
Q psy6849 6 RKFKTNDKVFAKVRGYPPWPARIEGLADE-------TPNRLKYHIFFYGTRETGICRQDELFPYTEFKDKY--GKGVKRK 76 (439)
Q Consensus 6 ~~fk~GDLVWAKvkGYP~WPArV~~~pev-------k~~~~ky~V~FFGt~e~Awv~~k~L~Py~e~kekf--~K~~Krk 76 (439)
+.|.+||||||||+|||||||+|+++..+ ++..+.|+|+|||++++|||.+++|+||.++..+| .++++++
T Consensus 7 ~~~~~GdlVwaK~~g~p~WPa~V~~~~~~p~~~~~~~~~~~~~~V~FFg~~~~awv~~~~l~p~~~~~~~~~~~~~~~~k 86 (110)
T 2daq_A 7 GKLHYKQIVWVKLGNYRWWPAEICNPRSVPLNIQGLKHDLGDFPVFFFGSHDYYWVHQGRVFPYVEGDKSFAEGQTSINK 86 (110)
T ss_dssp CSCCSSEEEEEECSSSCEEEEEECCTTTSCHHHHTSCCCSSCEEEEETTTTEEEEECSSSSEECCSSCCSSSCSSCCCCS
T ss_pred CCCCCCCEEEEEeCCCCCCceeeCChhhCCHHHhhccCCCCcEEEEEecCCCEEEEcHHHCcCcchhhHHHhhhcccchH
Confidence 57899999999999999999999998542 34567899999999999999999999999988775 4567899
Q ss_pred HHHHHHHHHHHHhC
Q psy6849 77 FFTEALQEIECDFG 90 (439)
Q Consensus 77 ~F~eAl~Eaee~l~ 90 (439)
.|++||+||+.++.
T Consensus 87 ~f~~Al~eA~~~~~ 100 (110)
T 2daq_A 87 TFKKALEEAAKRFQ 100 (110)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998764
No 7
>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase, methylysine binding, STR genomics consortium, SGC, alternative promoter usage; HET: DNA BTB; 2.30A {Homo sapiens} SCOP: b.34.9.0
Probab=99.87 E-value=3e-23 Score=188.36 Aligned_cols=87 Identities=20% Similarity=0.410 Sum_probs=77.2
Q ss_pred CCCccCcEEEEeccCCCCCCceecCCCCC---CCCCceEEEEEecCCceeeecCCCcccchhhhhhhCCC--CChHHHHH
Q psy6849 6 RKFKTNDKVFAKVRGYPPWPARIEGLADE---TPNRLKYHIFFYGTRETGICRQDELFPYTEFKDKYGKG--VKRKFFTE 80 (439)
Q Consensus 6 ~~fk~GDLVWAKvkGYP~WPArV~~~pev---k~~~~ky~V~FFGt~e~Awv~~k~L~Py~e~kekf~K~--~Krk~F~e 80 (439)
..|.+||||||||+|||||||+|++++.. ++..++|+|+|||+++||||.+++|+||.+++++|.+. +|...|++
T Consensus 15 ~~f~~GDLVWaKvkG~PwWPa~V~~~~~~~k~~~~~~~~~V~FFG~~~~awv~~~~L~pf~e~~e~f~~~~~~K~~~fr~ 94 (154)
T 3llr_A 15 RGFGIGELVWGKLRGFSWWPGRIVSWWMTGRSRAAEGTRWVMWFGDGKFSVVCVEKLMPLSSFCSAFHQATYNKQPMYRK 94 (154)
T ss_dssp CCCCTTCEEEECCTTSCCEEEEEECGGGTTSCCCCTTEEEEEETTTCCEEEEEGGGEEEGGGHHHHCCHHHHHHCHHHHH
T ss_pred CCCccCCEEEEecCCCCCCCEEEecccccccccCCCCEEEEEEeCCCCEEEEcHHHCcchhhhHHHHhhhhccchHHHHH
Confidence 68999999999999999999999998642 34578999999999999999999999999999999853 57789999
Q ss_pred HHHHHHHHhCCC
Q psy6849 81 ALQEIECDFGTP 92 (439)
Q Consensus 81 Al~Eaee~l~n~ 92 (439)
||.+|.+.+...
T Consensus 95 AV~eAle~a~~R 106 (154)
T 3llr_A 95 AIYEVLQVASSR 106 (154)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999886643
No 8
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A*
Probab=99.86 E-value=9.9e-23 Score=183.63 Aligned_cols=88 Identities=16% Similarity=0.257 Sum_probs=76.4
Q ss_pred cCCCccCcEEEEeccCCCCCCceecCCCCC---CCCCceEEEEEecCCceeeecCCCcccchhhhhhhCC--CCChHHHH
Q psy6849 5 ERKFKTNDKVFAKVRGYPPWPARIEGLADE---TPNRLKYHIFFYGTRETGICRQDELFPYTEFKDKYGK--GVKRKFFT 79 (439)
Q Consensus 5 ~~~fk~GDLVWAKvkGYP~WPArV~~~pev---k~~~~ky~V~FFGt~e~Awv~~k~L~Py~e~kekf~K--~~Krk~F~ 79 (439)
...|.+||||||||+|||||||+|++++.. ....+.|+|+|||++++|||.+++|+||.+++++|.+ .+|++.|+
T Consensus 9 ~~~~~~GDlVWaKvkGyPwWPa~V~~~~~~~~~~~~~~~~~V~FFG~~~~awv~~~~L~p~~~~~e~f~~~~~~K~~~f~ 88 (147)
T 1khc_A 9 DKEFGIGDLVWGKIKGFSWWPAMVVSWKATSKRQAMPGMRWVQWFGDGKFSEISADKLVALGLFSQHFNLATFNKLVSYR 88 (147)
T ss_dssp SSSCCTTCEEEEEETTTEEEEEEEECGGGTTSCCCCTTEEEEEETTTCCEEEEEGGGCEETTSHHHHCCHHHHHHCHHHH
T ss_pred CccCcCCCEEEEecCCcCCCCEEeccchhhhcccCCCCeEEEEEecCCCEEEEcHHHCccchHHHHHHhhhccccHHHHH
Confidence 367999999999999999999999998763 1246899999999999999999999999999999984 35678999
Q ss_pred HHHHHHHHHhCCC
Q psy6849 80 EALQEIECDFGTP 92 (439)
Q Consensus 80 eAl~Eaee~l~n~ 92 (439)
+||.+|.+.+...
T Consensus 89 kAv~eA~e~A~~r 101 (147)
T 1khc_A 89 KAMYHTLEKARVR 101 (147)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998776543
No 9
>2l89_A PWWP domain-containing protein 1; histone binding, protein binding; NMR {Schizosaccharomyces pombe}
Probab=99.85 E-value=3e-22 Score=171.71 Aligned_cols=90 Identities=20% Similarity=0.366 Sum_probs=71.5
Q ss_pred cCCCccCcEEEEeccCCCCCCceecCCCC----C---CCCCceEEEEEecCCceeeecCCCcccchhh-hhhhCC--CCC
Q psy6849 5 ERKFKTNDKVFAKVRGYPPWPARIEGLAD----E---TPNRLKYHIFFYGTRETGICRQDELFPYTEF-KDKYGK--GVK 74 (439)
Q Consensus 5 ~~~fk~GDLVWAKvkGYP~WPArV~~~pe----v---k~~~~ky~V~FFGt~e~Awv~~k~L~Py~e~-kekf~K--~~K 74 (439)
...|++||||||||+|||||||+|++++. + +...+.|+|+|||+++||||.+++|+||.+. .+.|.. .+|
T Consensus 3 ~~~~~~GdlVwaK~~gyP~WPa~V~~~~~~p~~v~~~~~~~~~~~V~FFg~~~~aWv~~~~l~p~~~~~~~~~~~~~k~k 82 (108)
T 2l89_A 3 DDRLNFGDRILVKAPGYPWWPALLLRRKETKDSLNTNSSFNVLYKVLFFPDFNFAWVKRNSVKPLLDSEIAKFLGSSKRK 82 (108)
T ss_dssp SCCCCTTEEEEEECSSSCEEEEEEEEEEEEESSSCSSSCEEEEEEEEETTTTEEEEECGGGEEECCHHHHHHHHHCSSSC
T ss_pred CCcccCCCEEEEEeCCcCCCceEecCcccCcHHHhhccCCCCeEEEEECCCCCEEEEchhhceeCCHHHHHHHHhccCCC
Confidence 46899999999999999999999998643 2 1336789999999999999999999999953 455553 345
Q ss_pred hHHHHHHHHHHHHHhCCCCCcCCC
Q psy6849 75 RKFFTEALQEIECDFGTPESRANL 98 (439)
Q Consensus 75 rk~F~eAl~Eaee~l~n~~~~~~~ 98 (439)
.+.|++|+.+|. +...+..+
T Consensus 83 ~k~l~~Aye~A~----~~~~l~~f 102 (108)
T 2l89_A 83 SKELIEAYEASK----TPPDLKEE 102 (108)
T ss_dssp CHHHHHHHHHHT----CGGGTSSC
T ss_pred CHHHHHHHHHHc----cCCCHHHH
Confidence 678888888887 55555433
No 10
>2gfu_A DNA mismatch repair protein MSH6; PWWP domain, tudor domain, DNA binding, DNA binding protein; HET: DNA; NMR {Homo sapiens}
Probab=99.85 E-value=8.4e-22 Score=174.35 Aligned_cols=88 Identities=25% Similarity=0.416 Sum_probs=74.6
Q ss_pred CCCccCcEEEEeccCCCCCCceecCCCCC------CCCCceEEEEEecCC-ceeeecCCCcccchhhhhhhC-C----CC
Q psy6849 6 RKFKTNDKVFAKVRGYPPWPARIEGLADE------TPNRLKYHIFFYGTR-ETGICRQDELFPYTEFKDKYG-K----GV 73 (439)
Q Consensus 6 ~~fk~GDLVWAKvkGYP~WPArV~~~pev------k~~~~ky~V~FFGt~-e~Awv~~k~L~Py~e~kekf~-K----~~ 73 (439)
..|.+||||||||+|||||||+|++++.. +...+.|+|+|||++ ++|||.+++|+||.++...+. + ..
T Consensus 21 ~~~~~GdlVwaK~~g~P~WPa~V~~~~~~~~~~~~~~~~~~~~V~FFg~~~~~aWv~~~~l~pf~~~~~~~~~k~~~~~~ 100 (134)
T 2gfu_A 21 SDFSPGDLVWAKMEGYPWWPSLVYNHPFDGTFIREKGKSVRVHVQFFDDSPTRGWVSKRLLKPYTGSKSKEAQKGGHFYS 100 (134)
T ss_dssp CCCCTTSEEEECCTTSCCEEEECCCCSSTTCCEEESSSCEEEEEEECSSSCEEEEECGGGEEESCCTTSTTTSTTCTTCC
T ss_pred CCCCCCCEEEEeecCCCCCCeeecchhhhhhhhhccCCCceEEEEECCCCCceEEECHHHcccCcchhHHHHhhcccchh
Confidence 68999999999999999999999998753 234578999999995 899999999999998777654 2 23
Q ss_pred ChHHHHHHHHHHHHHhCCCC
Q psy6849 74 KRKFFTEALQEIECDFGTPE 93 (439)
Q Consensus 74 Krk~F~eAl~Eaee~l~n~~ 93 (439)
+++.|++||.+|+.++.-..
T Consensus 101 ~~~~~~~Ai~~A~~a~~~~~ 120 (134)
T 2gfu_A 101 AKPEILRAMQRADEALNKDK 120 (134)
T ss_dssp CCHHHHHHHHHHHHHHSSCH
T ss_pred ccHHHHHHHHHHHHHhcCCH
Confidence 57899999999999987543
No 11
>1h3z_A Hypothetical 62.8 kDa protein C215.07C; nuclear protein, PWWP, chromatin, beta-barrel; NMR {Schizosaccharomyces pombe} SCOP: b.34.9.2
Probab=99.82 E-value=4.5e-21 Score=164.06 Aligned_cols=84 Identities=21% Similarity=0.357 Sum_probs=68.0
Q ss_pred ccCCCccCcEEEEeccCCCCCCceecCCCCC-------CCC--CceEEEEEecCCceeeecCCCcccchhh-hhhhC-C-
Q psy6849 4 VERKFKTNDKVFAKVRGYPPWPARIEGLADE-------TPN--RLKYHIFFYGTRETGICRQDELFPYTEF-KDKYG-K- 71 (439)
Q Consensus 4 ~~~~fk~GDLVWAKvkGYP~WPArV~~~pev-------k~~--~~ky~V~FFGt~e~Awv~~k~L~Py~e~-kekf~-K- 71 (439)
-...|++||||||||+|||||||+|+++.+. ++. .+.|+|+|||++++|||.+++|+||.++ .+.|. +
T Consensus 3 ~~~~~~~GdlVwaK~~gyP~WPa~V~~p~~~~~~~~~~~~~~~~~~~~V~FFg~~~~aWv~~~~l~p~~~~~~~~~~~~~ 82 (109)
T 1h3z_A 3 ERVNYKPGMRVLTKMSGFPWWPSMVVTESKMTSVARKSKPKRAGTFYPVIFFPNKEYLWTGSDSLTPLTSEAISQFLEKP 82 (109)
T ss_dssp CCCCCCTTCEEEEEETTEEEEEEEECCGGGCCHHHHHTCCCSSSCEEEEEETTTTCCEEEEGGGEEECCHHHHHHHHHSC
T ss_pred CcccCCCCCEEEEEeCCcCCCCEEEcccHHHhHHhhccCCCCCCCEEEEEEcCCCCEEEECHHHeeeCCchHHHHHhhcc
Confidence 3568999999999999999999999964321 233 7899999999999999999999999853 34443 3
Q ss_pred CCChHHHHHHHHHHHH
Q psy6849 72 GVKRKFFTEALQEIEC 87 (439)
Q Consensus 72 ~~Krk~F~eAl~Eaee 87 (439)
++|++.+.+|+.+|..
T Consensus 83 ~~k~k~l~~Ay~~A~~ 98 (109)
T 1h3z_A 83 KPKTASLIKAYKMAQS 98 (109)
T ss_dssp SSCCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3467889999988883
No 12
>3pfs_A Bromodomain and PHD finger-containing protein 3; structural genomics, structural genomics consortium, SGC, PW domain, protein binding; 1.90A {Homo sapiens} PDB: 3lyi_A*
Probab=99.66 E-value=6.7e-17 Score=147.07 Aligned_cols=60 Identities=23% Similarity=0.405 Sum_probs=51.5
Q ss_pred CCCccCcEEEEeccCCCCCCceecCCCCCC---------------------------CCCceEEEEEecC-CceeeecCC
Q psy6849 6 RKFKTNDKVFAKVRGYPPWPARIEGLADET---------------------------PNRLKYHIFFYGT-RETGICRQD 57 (439)
Q Consensus 6 ~~fk~GDLVWAKvkGYP~WPArV~~~pevk---------------------------~~~~ky~V~FFGt-~e~Awv~~k 57 (439)
..|.+||||||||+|||||||+|+++.... .....|+|+|||+ ++++||...
T Consensus 35 ~~~~pgdlVWAK~~GyPwwPa~Iidp~~p~~g~~~~~v~ip~pP~~Vlk~~~~~~~~~~~~~ylV~FFd~~~t~aWV~~~ 114 (158)
T 3pfs_A 35 GDLEPLELVWAKCRGYPSYPALIIDPKMPREGLLHNGVPIPVPPLDVLKLGEQKQAEAGEKLFLVLFFDNKRTWQWLPRD 114 (158)
T ss_dssp SCCCTTCEEEEECTTSCEEEEEEECTTSCTTCEEETTEEECCCCHHHHHHHHHHHHHHTSCEEEEEECSTTCCEEEEEGG
T ss_pred CCCCCCCEEEEecCCCCCCCEEEcCCCCccccccccccccCCChHHHHhhcccccccCCCCEEEEEEcCCCCceEeeccc
Confidence 479999999999999999999999964311 1367899999996 799999999
Q ss_pred Ccccchhh
Q psy6849 58 ELFPYTEF 65 (439)
Q Consensus 58 ~L~Py~e~ 65 (439)
+|+||...
T Consensus 115 ~L~Pl~~d 122 (158)
T 3pfs_A 115 KVLPLGVE 122 (158)
T ss_dssp GEEECSSC
T ss_pred cEeecCCc
Confidence 99999853
No 13
>3l42_A Peregrin; transcription regulation, histone H3 acetylation, chromatin modification, structural genomics, structural genomics CONS SGC, activator; 1.30A {Homo sapiens} PDB: 3mo8_A* 2x4w_A* 2x35_A* 2x4x_A* 2x4y_A*
Probab=99.65 E-value=2.1e-16 Score=139.76 Aligned_cols=84 Identities=26% Similarity=0.315 Sum_probs=62.6
Q ss_pred CCCccCcEEEEeccCCCCCCceecCCCCCC---------------------------CCCceEEEEEec-CCceeeecCC
Q psy6849 6 RKFKTNDKVFAKVRGYPPWPARIEGLADET---------------------------PNRLKYHIFFYG-TRETGICRQD 57 (439)
Q Consensus 6 ~~fk~GDLVWAKvkGYP~WPArV~~~pevk---------------------------~~~~ky~V~FFG-t~e~Awv~~k 57 (439)
..|.+|||||||++|||||||+|+++.... .....|+|+||| .++++||..+
T Consensus 4 ~~~~~~dlVWAK~~gyP~wPa~Iidp~~p~~g~~~~g~~ip~pP~~Vl~~~~~~~~~~~~~~y~V~FFd~~~t~aWv~~~ 83 (130)
T 3l42_A 4 SPLDALDLVWAKCRGYPSYPALIIDPKMPREGMFHHGVPIPVPPLEVLKLGEQMTQEAREHLYLVLFFDNKRTWQWLPRT 83 (130)
T ss_dssp SSSCTTCEEEECCTTSCCEEEEEECTTSCTTCEEETTEEECCCCHHHHHHHHHHHHHCSSCEEEEEESSTTCCEEEEEGG
T ss_pred ccCCCCCEEEEecccCCCCCEEEcCCCCccccccccCccCCCChHHHHhhcccccccCCCcEEEEEeCCCCCceEeeccc
Confidence 579999999999999999999999964211 125679999999 5899999999
Q ss_pred Ccccchhhh--hh--hCCC---CChHHHHHHHHHHHHHh
Q psy6849 58 ELFPYTEFK--DK--YGKG---VKRKFFTEALQEIECDF 89 (439)
Q Consensus 58 ~L~Py~e~k--ek--f~K~---~Krk~F~eAl~Eaee~l 89 (439)
+|+||.... +. .... +.++..+.|...|..++
T Consensus 84 ~i~pl~~d~~~D~~kl~~s~K~~~rKav~~AYe~A~~~~ 122 (130)
T 3l42_A 84 KLVPLGVNQDLDKEKMLEGRKSNIRKSVQIAYHRALQHR 122 (130)
T ss_dssp GEEESSSCHHHHHHHHTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred ceeecCCchhhHHHhcccCCCHHHHHHHHHHHHHHHHHH
Confidence 999999543 22 2122 23566666666665543
No 14
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=97.70 E-value=5.4e-05 Score=64.38 Aligned_cols=80 Identities=16% Similarity=0.250 Sum_probs=69.4
Q ss_pred hhhhHHHHHHHHHHHhhCCCCCCHHHHHHHHHhhcCCCCChHHhhhCchHHHHHHHhhhhccCccccccCHHHHHHhhhh
Q psy6849 297 KLEVCILDIDLRIKDSIGLEHADCDECLKALDDLINLPITPLVLKKHPEIVDTCRRLQRYTGNIAEWTMTEEEAEVFTQK 376 (439)
Q Consensus 297 ~~E~~l~~l~~~ik~sL~~~~~dv~~cl~aLdel~~L~vt~~mL~k~~e~V~tirklrry~gn~~~w~~~~~~~~~f~~~ 376 (439)
.+|..++++...|..++. ..|.+.||++|.+|..++||..+|+. ..|-.++.+||++..|
T Consensus 9 ~~e~ev~~i~k~L~k~~~--~~~~~~~l~~L~~L~~~~iT~e~L~~-T~IGk~Vn~LrKh~~~----------------- 68 (103)
T 1wjt_A 9 GLEEELLRIAKKLEKMVS--RKKTEGALDLLKKLNSCQMSIQLLQT-TRIGVAVNGVRKHCSD----------------- 68 (103)
T ss_dssp CSHHHHHHHHHHHHHHHH--TTCCSSHHHHHHHHHTSCCCHHHHHH-TCHHHHHHHHHHHCCC-----------------
T ss_pred chHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHhCCCCCHHHHHH-cchhHHHHHHHccCCc-----------------
Confidence 357788899999998877 45778899999999999999998877 8899999999999443
Q ss_pred HHHHHHHHHHHHHHhhhhccc
Q psy6849 377 ASQVRAKADHVYNKFKNLFTV 397 (439)
Q Consensus 377 a~~Ir~kA~~ly~kfK~~F~~ 397 (439)
..|+..|..|+.+||.+...
T Consensus 69 -~~V~~lAk~Lv~~WK~~v~~ 88 (103)
T 1wjt_A 69 -KEVVSLAKVLIKNWKRLLDS 88 (103)
T ss_dssp -SHHHHHHHHHHHHHHHHTCC
T ss_pred -HHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999854
No 15
>3pmi_A PWWP domain-containing protein MUM1; structural genomics consortium, SGC, protein binding, nucLeu; HET: UNL; 2.82A {Homo sapiens}
Probab=96.88 E-value=0.00051 Score=60.36 Aligned_cols=75 Identities=19% Similarity=0.297 Sum_probs=52.2
Q ss_pred cCCCccCcEEEEeccCCCCCCceecCCCCCCCCCceEEEEEecCCc-----eeeecCCCcccch-hhhhhhCCCCChHHH
Q psy6849 5 ERKFKTNDKVFAKVRGYPPWPARIEGLADETPNRLKYHIFFYGTRE-----TGICRQDELFPYT-EFKDKYGKGVKRKFF 78 (439)
Q Consensus 5 ~~~fk~GDLVWAKvkGYP~WPArV~~~pevk~~~~ky~V~FFGt~e-----~Awv~~k~L~Py~-e~kekf~K~~Krk~F 78 (439)
...|..|-|||.|+..||.|||.|-+.. ....+..|-|.-.+. ---|+.+.|.||+ +.++.+... -++.|
T Consensus 2 p~~~e~GmlVW~K~q~yPfWPAVVKSV~---r~ekkA~VL~Ie~~m~~ekrGi~V~LrrLK~fDC~ek~~L~~r-Are~Y 77 (134)
T 3pmi_A 2 PRSFEVGMLVWHKHKKYPFWPAVVKSVR---QRDKKASVLYIEGHMNPKMKGFTVSLKSLKHFDCKEKQTLLNQ-AREDF 77 (134)
T ss_dssp --CCCTTCEEEECCTTSCCEEEEEEEEE---GGGTEEEEEECCSSCCTTSCCEEEEGGGCEETTSTTHHHHHHH-HTTTC
T ss_pred CcccccceEEEEEeccCCCcchheeeee---eccceEEEEEEeCCCCcccCceEeEcccCCCCChHhHHHHHHH-HHHHh
Confidence 3578999999999999999999998763 345788999987332 2357889999999 555554421 12344
Q ss_pred HHHHH
Q psy6849 79 TEALQ 83 (439)
Q Consensus 79 ~eAl~ 83 (439)
.++|.
T Consensus 78 ~qsi~ 82 (134)
T 3pmi_A 78 NQDIG 82 (134)
T ss_dssp HHHHH
T ss_pred ccchh
Confidence 55543
No 16
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=96.85 E-value=0.0007 Score=53.50 Aligned_cols=59 Identities=15% Similarity=0.294 Sum_probs=48.7
Q ss_pred ccccCCCccCcEEEEeccCCCCCCceecCCCCCCCCCceEEEEEecCCceeeecCCCcccchhh
Q psy6849 2 PAVERKFKTNDKVFAKVRGYPPWPARIEGLADETPNRLKYHIFFYGTRETGICRQDELFPYTEF 65 (439)
Q Consensus 2 ~~~~~~fk~GDLVWAKvkGYP~WPArV~~~pevk~~~~ky~V~FFGt~e~Awv~~k~L~Py~e~ 65 (439)
|-|...|++||.|.|+...-.+-||+|.... ..+.|.|.|++ +..--|...+|.|+...
T Consensus 1 ~~~~~~~~vGd~vmArW~D~~yYpA~I~si~----~~~~Y~V~F~d-G~~etvk~~~ikp~~~~ 59 (67)
T 3p8d_A 1 GHMSSEFQINEQVLACWSDCRFYPAKVTAVN----KDGTYTVKFYD-GVVQTVKHIHVKAFSKD 59 (67)
T ss_dssp ----CCCCTTCEEEEECTTSCEEEEEEEEEC----TTSEEEEEETT-SCEEEEEGGGEEECC--
T ss_pred CCcCcccccCCEEEEEcCCCCEeeEEEEEEC----CCCeEEEEEeC-CceEEEeHHHcccCCcc
Confidence 4567899999999999999999999999885 23689999999 89999999999999864
No 17
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=96.58 E-value=0.0013 Score=54.21 Aligned_cols=57 Identities=16% Similarity=0.317 Sum_probs=47.8
Q ss_pred cCCCccCcEEEEeccCCCCCCceecCCCCCCCCCceEEEEEecCCceeeecCCCcccchhhh
Q psy6849 5 ERKFKTNDKVFAKVRGYPPWPARIEGLADETPNRLKYHIFFYGTRETGICRQDELFPYTEFK 66 (439)
Q Consensus 5 ~~~fk~GDLVWAKvkGYP~WPArV~~~pevk~~~~ky~V~FFGt~e~Awv~~k~L~Py~e~k 66 (439)
...|++||.|+|+...-.|.||+|.... ..+.|.|.|++ +..--|...+|.|+....
T Consensus 19 ~~~f~vGd~VlArW~D~~yYPAkI~sV~----~~~~YtV~F~D-G~~etvk~~~IKp~~~~~ 75 (85)
T 3qii_A 19 SSEFQINEQVLACWSDCRFYPAKVTAVN----KDGTYTVKFYD-GVVQTVKHIHVKAFSKDQ 75 (85)
T ss_dssp --CCCTTCEEEEECTTSCEEEEEEEEEC----TTSEEEEEETT-SCEEEEEGGGEEECC---
T ss_pred CcccccCCEEEEEeCCCCEeeEEEEEEC----CCCeEEEEEeC-CCeEEecHHHcccCChhh
Confidence 3689999999999999999999999885 33689999999 889999999999998643
No 18
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=96.19 E-value=0.011 Score=58.58 Aligned_cols=75 Identities=11% Similarity=0.155 Sum_probs=62.2
Q ss_pred hhHHHHHHHHHHHhhCCCCCCHHHHHHHHHhh-cCCCCChHHhhhCchHHHHHHHhhhhccCccccccCHHHHHHhhhhH
Q psy6849 299 EVCILDIDLRIKDSIGLEHADCDECLKALDDL-INLPITPLVLKKHPEIVDTCRRLQRYTGNIAEWTMTEEEAEVFTQKA 377 (439)
Q Consensus 299 E~~l~~l~~~ik~sL~~~~~dv~~cl~aLdel-~~L~vt~~mL~k~~e~V~tirklrry~gn~~~w~~~~~~~~~f~~~a 377 (439)
|..|.+|...|.. ...+.+.||.+|.+| ..++||.-+|+. ..|-.++.+||++ .|
T Consensus 3 ~~el~~~~~~L~k----~~~~~~~~l~~L~~L~~~~~it~~~L~~-T~IG~~Vn~lrkh-~~------------------ 58 (309)
T 1pqv_S 3 SKEVLVHVKNLEK----NKSNDAAVLEILHVLDKEFVPTEKLLRE-TKVGVEVNKFKKS-TN------------------ 58 (309)
T ss_pred HHHHHHHHHHHhc----cCCCHHHHHHHHHHHHhcCCCCHHHHHh-CChhHHHHHHHcC-CC------------------
Confidence 4566666666666 467899999999999 999999766655 8899999999999 43
Q ss_pred HHHHHHHHHHHHHhhhhccc
Q psy6849 378 SQVRAKADHVYNKFKNLFTV 397 (439)
Q Consensus 378 ~~Ir~kA~~ly~kfK~~F~~ 397 (439)
..|+..|..|+.+||.+...
T Consensus 59 ~~v~~~Ak~Li~~WK~~v~~ 78 (309)
T 1pqv_S 59 VEISKLVKKMISSWKDAINK 78 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999853
No 19
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=94.70 E-value=0.0017 Score=53.01 Aligned_cols=59 Identities=15% Similarity=0.302 Sum_probs=51.1
Q ss_pred ccccCCCccCcEEEEeccCCCCCCceecCCCCCCCCCceEEEEEecCCceeeecCCCcccchhh
Q psy6849 2 PAVERKFKTNDKVFAKVRGYPPWPARIEGLADETPNRLKYHIFFYGTRETGICRQDELFPYTEF 65 (439)
Q Consensus 2 ~~~~~~fk~GDLVWAKvkGYP~WPArV~~~pevk~~~~ky~V~FFGt~e~Awv~~k~L~Py~e~ 65 (439)
|-|...|++||.|.|+...--|-||+|.... ..+.|.|.|.+ +..--|...+|.|+...
T Consensus 1 ~~~~~~~kvGd~clAkwsDg~wY~A~I~~v~----~~~~y~V~F~D-Gn~E~V~~s~LrPl~~~ 59 (81)
T 2ldm_A 1 GHMSSEFQINEQVLASWSDSRFYPAKVTAVN----KDGTYTVKFYD-GVVQTVKHIHVKAFSKD 59 (81)
Confidence 3467789999999999988899999999875 23589999999 89999999999999753
No 20
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=93.79 E-value=0.051 Score=40.17 Aligned_cols=52 Identities=17% Similarity=0.192 Sum_probs=42.6
Q ss_pred CCccCcEEEEecc-CCCCCCceecCCCCCCCCCceEEEEEecCCceeeecCCCccc
Q psy6849 7 KFKTNDKVFAKVR-GYPPWPARIEGLADETPNRLKYHIFFYGTRETGICRQDELFP 61 (439)
Q Consensus 7 ~fk~GDLVWAKvk-GYP~WPArV~~~pevk~~~~ky~V~FFGt~e~Awv~~k~L~P 61 (439)
.|++||++-|+.. .--|.+|+|..... ..+.+.|+|.+=+++.-|+.++|.|
T Consensus 1 ~wk~G~~c~A~~s~Dg~wYrA~I~~i~~---~~~~~~V~fvDYGn~e~v~~~~lrp 53 (54)
T 3s6w_A 1 MWKPGDECFALYWEDNKFYRAEVEALHS---SGMTAVVKFIDYGNYEEVLLSNIKP 53 (54)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEC-----CCSEEEEEETTTCCEEEEEGGGEEC
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEEEeC---CCCEEEEEEEccCCeEEEeHHHEEE
Confidence 4899999999984 44688999998742 3468999999988999999999987
No 21
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=93.51 E-value=0.056 Score=40.78 Aligned_cols=55 Identities=18% Similarity=0.179 Sum_probs=46.1
Q ss_pred CCCccCcEEEEecc-CCCCCCceecCCCCCCCCCceEEEEEecCCceeeecCCCcccch
Q psy6849 6 RKFKTNDKVFAKVR-GYPPWPARIEGLADETPNRLKYHIFFYGTRETGICRQDELFPYT 63 (439)
Q Consensus 6 ~~fk~GDLVWAKvk-GYP~WPArV~~~pevk~~~~ky~V~FFGt~e~Awv~~k~L~Py~ 63 (439)
..|++||++.|+.. .--|-+|+|..... ..+.+.|+|.+=++..-|+.++|.|..
T Consensus 2 ~~~~~G~~c~A~~s~Dg~wYrA~I~~i~~---~~~~~~V~f~DYGn~e~v~~~~Lr~~~ 57 (59)
T 1mhn_A 2 QQWKVGDKCSAIWSEDGCIYPATIASIDF---KRETCVVVYTGYGNREEQNLSDLLSPI 57 (59)
T ss_dssp CCCCTTCEEEEECTTTSCEEEEEEEEEET---TTTEEEEEETTTTEEEEEEGGGCBCTT
T ss_pred CcCCcCCEEEEEECCCCCEEEEEEEEEcC---CCCEEEEEEEcCCCEEEEcHHHeeCCC
Confidence 47999999999995 45688999998632 357999999998899999999999864
No 22
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=93.36 E-value=0.054 Score=41.62 Aligned_cols=57 Identities=23% Similarity=0.230 Sum_probs=47.6
Q ss_pred cCCCccCcEEEEecc-CCCCCCceecCCCCCCCCCceEEEEEecCCceeeecCCCcccchh
Q psy6849 5 ERKFKTNDKVFAKVR-GYPPWPARIEGLADETPNRLKYHIFFYGTRETGICRQDELFPYTE 64 (439)
Q Consensus 5 ~~~fk~GDLVWAKvk-GYP~WPArV~~~pevk~~~~ky~V~FFGt~e~Awv~~k~L~Py~e 64 (439)
...+++||++.|+.. .=-|-+|+|..... ..+.+.|+|.+=++...|+.++|.|..+
T Consensus 6 ~~~~~vGd~c~A~~s~Dg~wYrA~I~~v~~---~~~~~~V~fvdYGn~e~V~~~~Lrpl~~ 63 (64)
T 4a4f_A 6 THSWKVGDKCMAVWSEDGQCYEAEIEEIDE---ENGTAAITFAGYGNAEVTPLLNLKPVEE 63 (64)
T ss_dssp SSCCCTTCEEEEECTTTSSEEEEEEEEEET---TTTEEEEEETTTTEEEEEEGGGEECCSC
T ss_pred CCCCCCCCEEEEEECCCCCEEEEEEEEEcC---CCCEEEEEEEecCCEEEEeHHHcEeCCC
Confidence 357999999999994 44688999998742 3478999999989999999999999765
No 23
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.28 E-value=0.12 Score=41.36 Aligned_cols=56 Identities=20% Similarity=0.313 Sum_probs=47.9
Q ss_pred cCCCccCcEEEEeccCCCCCCceecCCCCCCCCCceEEEEEecCCceeeecCCCcccchhh
Q psy6849 5 ERKFKTNDKVFAKVRGYPPWPARIEGLADETPNRLKYHIFFYGTRETGICRQDELFPYTEF 65 (439)
Q Consensus 5 ~~~fk~GDLVWAKvkGYP~WPArV~~~pevk~~~~ky~V~FFGt~e~Awv~~k~L~Py~e~ 65 (439)
...|++||.|.|+...--|-||+|..... .+.|.|.|.+- ..--|...+|.|..+.
T Consensus 7 ~~~~kvGd~clA~wsDg~~Y~A~I~~v~~----~~~~~V~f~Dy-n~e~v~~~~lrplp~~ 62 (74)
T 2equ_A 7 GFDFKAGEEVLARWTDCRYYPAKIEAINK----EGTFTVQFYDG-VIRCLKRMHIKAMPED 62 (74)
T ss_dssp CCCCCTTCEEEEECSSSSEEEEEEEEEST----TSSEEEEETTS-CEEEECGGGEECCCGG
T ss_pred CCCCCCCCEEEEECCCCCEEEEEEEEECC----CCEEEEEEecC-CeEEecHHHCeeCChh
Confidence 46799999999999888899999998742 37899999987 8888899999998853
No 24
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=91.92 E-value=0.14 Score=40.93 Aligned_cols=57 Identities=16% Similarity=0.171 Sum_probs=48.2
Q ss_pred cCCCccCcEEEEecc-CCCCCCceecCCCCCCCCCceEEEEEecCCceeeecCCCcccchh
Q psy6849 5 ERKFKTNDKVFAKVR-GYPPWPARIEGLADETPNRLKYHIFFYGTRETGICRQDELFPYTE 64 (439)
Q Consensus 5 ~~~fk~GDLVWAKvk-GYP~WPArV~~~pevk~~~~ky~V~FFGt~e~Awv~~k~L~Py~e 64 (439)
...+++||++.|+.. .--|.+|+|..... ..+.+.|+|.+-+++.-|..++|.|+..
T Consensus 7 ~~~~~~G~~c~A~~s~Dg~wYRA~I~~i~~---~~~~~~V~fiDYGN~e~V~~~~Lr~l~~ 64 (78)
T 2d9t_A 7 GKVWKPGDECFALYWEDNKFYRAEVEALHS---SGMTAVVKFTDYGNYEEVLLSNIKPVQT 64 (78)
T ss_dssp CCCCCTTCEEEEECTTTCCEEEEEEEEECS---SSSEEEEEETTTTEEEEEEGGGEEECCC
T ss_pred ccCCCcCCEEEEEECCCCCEEEEEEEEEeC---CCCEEEEEEEcCCCeEEEcHHHeEeCCH
Confidence 357899999999995 45799999998632 2478999999999999999999999874
No 25
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=91.57 E-value=0.14 Score=40.94 Aligned_cols=56 Identities=16% Similarity=0.190 Sum_probs=45.9
Q ss_pred CCCccCcEEEEecc-CCCCCCceecCCCCCCCCCceEEEEEecCCceeeecCCCcccchh
Q psy6849 6 RKFKTNDKVFAKVR-GYPPWPARIEGLADETPNRLKYHIFFYGTRETGICRQDELFPYTE 64 (439)
Q Consensus 6 ~~fk~GDLVWAKvk-GYP~WPArV~~~pevk~~~~ky~V~FFGt~e~Awv~~k~L~Py~e 64 (439)
..+++||++.|+.. .--|.+|+|..... ..+.+.|+|.+=+++.-|+.++|.|...
T Consensus 16 ~~~kvGd~C~A~ys~Dg~wYRA~I~~i~~---~~~~~~V~fvDYGN~e~V~~~~Lr~l~~ 72 (77)
T 3pnw_C 16 KMWKPGDECFALYWEDNKFYRAEVEALHS---SGMTAVVKFIDYGNYEEVLLSNIKPIQT 72 (77)
T ss_dssp TTCCTTCEEEEEETTTTEEEEEEEEEECT---TSSEEEEEETTTCCEEEEEGGGEECC--
T ss_pred CCCCcCCEEEEEECCCCCEEEEEEEEEeC---CCCEEEEEEEcCCCeEEEeHHHeEECCh
Confidence 57999999999984 55688999998642 3468999999988999999999999874
No 26
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=91.55 E-value=0.14 Score=42.08 Aligned_cols=56 Identities=18% Similarity=0.159 Sum_probs=47.3
Q ss_pred CCCccCcEEEEecc-CCCCCCceecCCCCCCCCCceEEEEEecCCceeeecCCCcccchh
Q psy6849 6 RKFKTNDKVFAKVR-GYPPWPARIEGLADETPNRLKYHIFFYGTRETGICRQDELFPYTE 64 (439)
Q Consensus 6 ~~fk~GDLVWAKvk-GYP~WPArV~~~pevk~~~~ky~V~FFGt~e~Awv~~k~L~Py~e 64 (439)
..|++||++.|+.. .--|-+|+|..... ..+.|.|+|.+-+..--|+..+|.|...
T Consensus 9 ~~~kvGd~C~A~ys~Dg~wYrA~I~~i~~---~~~~~~V~fiDYGN~E~V~~~~Lrp~~~ 65 (88)
T 1g5v_A 9 QQWKVGDKCSAIWSEDGCIYPATIASIDF---KRETCVVVYTGYGNREEQNLSDLLSPIC 65 (88)
T ss_dssp CCCCSSCEEEEECTTTCCEEEEEEEEEET---TTTEEEEEETTTCCEEEEEGGGCBCCC-
T ss_pred CCCCCCCEEEEEECCCCCEEEEEEEEecC---CCCEEEEEEecCCCEEEEcHHHcccCCh
Confidence 57999999999995 66789999998732 2479999999988899999999999763
No 27
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=87.48 E-value=0.45 Score=37.32 Aligned_cols=60 Identities=12% Similarity=0.196 Sum_probs=47.8
Q ss_pred CccccCCCccCcEEEEeccCC-CCCCceecCCCCCCCCCceEEEEEecCCceeeecCCCcccchh
Q psy6849 1 MPAVERKFKTNDKVFAKVRGY-PPWPARIEGLADETPNRLKYHIFFYGTRETGICRQDELFPYTE 64 (439)
Q Consensus 1 m~~~~~~fk~GDLVWAKvkGY-P~WPArV~~~pevk~~~~ky~V~FFGt~e~Awv~~k~L~Py~e 64 (439)
|+--...|.+||.|.||..|- -..||+|.+... ....|.|-|=. +..--|..++|.|-..
T Consensus 3 ~~mp~~~~~vgd~VmaRW~Gd~~yYparI~Si~s---~~~~Y~V~fKd-gT~e~L~~kDIkp~~s 63 (66)
T 2l8d_A 3 MGMPNRKYADGEVVMGRWPGSVLYYEVQVTSYDD---ASHLYTVKYKD-GTELALKESDIRLQSS 63 (66)
T ss_dssp SSCSSSSSCSSCEEEEECTTSSCEEEEEEEEEET---TTTEEEEEETT-SCEEEEEGGGEECSSS
T ss_pred cCCCceEeecCCEEEEEcCCCccceEEEEEEecc---CCceEEEEecC-CCEEeechhccccchh
Confidence 444458999999999999664 457999998863 56789999877 7888899999998743
No 28
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=85.08 E-value=0.62 Score=37.68 Aligned_cols=56 Identities=18% Similarity=0.217 Sum_probs=47.2
Q ss_pred CCCccCcEEEEec-cCCCCCCceecCCCCCCCCCceEEEEEecCCceeeecCCCcccchhh
Q psy6849 6 RKFKTNDKVFAKV-RGYPPWPARIEGLADETPNRLKYHIFFYGTRETGICRQDELFPYTEF 65 (439)
Q Consensus 6 ~~fk~GDLVWAKv-kGYP~WPArV~~~pevk~~~~ky~V~FFGt~e~Awv~~k~L~Py~e~ 65 (439)
..+++||++-|+. ..--|..|+|.... ..+.+.|+|.+-+.+..|+.++|.+....
T Consensus 26 ~~~~~G~~c~a~~~~d~~wyRA~I~~~~----~~~~~~V~fvDyGn~e~v~~~~lr~l~~~ 82 (94)
T 3fdr_A 26 LTVHVGDIVAAPLPTNGSWYRARVLGTL----ENGNLDLYFVDFGDNGDCPLKDLRALRSD 82 (94)
T ss_dssp CCCCTTCEEEEEETTTTEEEEEEEEEEC----TTSCEEEEETTTCCEEEECGGGCEECCGG
T ss_pred CCCCCCCEEEEEECCCCeEEEEEEEEEC----CCCeEEEEEEcCCCeEEEEHHHhhhcCHH
Confidence 3578999999998 35578899999874 23689999999999999999999998753
No 29
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=84.65 E-value=0.99 Score=37.56 Aligned_cols=55 Identities=18% Similarity=0.244 Sum_probs=46.9
Q ss_pred CCCccCcEEEEecc-CCCCCCceecCCCCCCCCCceEEEEEecCCceeeecCCCcccchh
Q psy6849 6 RKFKTNDKVFAKVR-GYPPWPARIEGLADETPNRLKYHIFFYGTRETGICRQDELFPYTE 64 (439)
Q Consensus 6 ~~fk~GDLVWAKvk-GYP~WPArV~~~pevk~~~~ky~V~FFGt~e~Awv~~k~L~Py~e 64 (439)
..+++|++|-|+.. .--|..|+|.... ..+.+.|+|..-+.+..|+.++|.+...
T Consensus 31 ~~~~~G~~c~a~~~~d~~wyRA~V~~~~----~~~~~~V~fvDyGn~e~v~~~~Lr~l~~ 86 (110)
T 2diq_A 31 LTVHVGDIVAAPLPTNGSWYRARVLGTL----ENGNLDLYFVDFGDNGDCPLKDLRALRS 86 (110)
T ss_dssp CCCCTTCEEEECCTTTCSCEEEEECCCC----SSSCEEEEETTTCCEEEECGGGCEECCH
T ss_pred CCCCCCCEEEEEECCCCeEEEEEEEEEC----CCCeEEEEEEeCCCeEEEehHHhhcCcH
Confidence 35789999999984 4579999999874 2368999999999999999999999875
No 30
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster}
Probab=84.38 E-value=0.21 Score=40.86 Aligned_cols=57 Identities=12% Similarity=0.249 Sum_probs=45.8
Q ss_pred CCCccCcEEEEeccCCCCCCceecCCCCCCCCCceEEEEEecCCce--eeecCCCcccchh
Q psy6849 6 RKFKTNDKVFAKVRGYPPWPARIEGLADETPNRLKYHIFFYGTRET--GICRQDELFPYTE 64 (439)
Q Consensus 6 ~~fk~GDLVWAKvkGYP~WPArV~~~pevk~~~~ky~V~FFGt~e~--Awv~~k~L~Py~e 64 (439)
..|.+|+.|++...+ -|.+|.|+.... ......|.|.|-|-+.+ -||+.+.|..|.+
T Consensus 11 ~~~~~Gekv~~~~~~-~~y~AkIl~i~~-~~~~~~YyVHY~GwNkR~DEWV~~~Rl~k~t~ 69 (85)
T 2lrq_A 11 TLFVDGERVLCFHGP-LIYEAKVLKTKP-DATPVEYYIHYAGWSKNWDEWVPENRVLKYND 69 (85)
Confidence 579999999999876 568999988743 22346899999995544 6999999999984
No 31
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=82.99 E-value=0.39 Score=40.62 Aligned_cols=57 Identities=19% Similarity=0.355 Sum_probs=45.6
Q ss_pred CCCccCcEEEEeccCCCCCCceecCCCCCCCCCceEEEEEecCCce--eeecCCCcccchh
Q psy6849 6 RKFKTNDKVFAKVRGYPPWPARIEGLADETPNRLKYHIFFYGTRET--GICRQDELFPYTE 64 (439)
Q Consensus 6 ~~fk~GDLVWAKvkGYP~WPArV~~~pevk~~~~ky~V~FFGt~e~--Awv~~k~L~Py~e 64 (439)
..|.+|+.|++.. |=-|.+|.|+.... ......|.|.|-|.+.+ -||+.+.|.+|.+
T Consensus 21 ~~f~vGekVl~~~-~~~~YeAkIl~v~~-~~~~~~Y~VHY~GwNkR~DEWV~~~Rl~k~t~ 79 (102)
T 2f5k_A 21 PKFQEGERVLCFH-GPLLYEAKCVKVAI-KDKQVKYFIHYSGWNKNWDEWVPESRVLKYVD 79 (102)
T ss_dssp CSCCTTCEEEEES-SSSEEEEEEEEEEE-ETTEEEEEEEETTSCGGGCEEEEGGGEEESSH
T ss_pred cccCCCCEEEEEE-CCEEEEEEEEEEEE-cCCCcEEEEEeCCcCCCceeeccHhhcccCCH
Confidence 5799999999988 45688999998642 12345899999996655 6999999999994
No 32
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain, histone deacetylase; HET: M2L; NMR {Saccharomyces cerevisiae}
Probab=82.25 E-value=0.5 Score=41.96 Aligned_cols=63 Identities=22% Similarity=0.296 Sum_probs=48.7
Q ss_pred CccccCCCccCcEEEEeccCCCCCCceecCCCC-----CCC---------------------C-----------CceEEE
Q psy6849 1 MPAVERKFKTNDKVFAKVRGYPPWPARIEGLAD-----ETP---------------------N-----------RLKYHI 43 (439)
Q Consensus 1 m~~~~~~fk~GDLVWAKvkGYP~WPArV~~~pe-----vk~---------------------~-----------~~ky~V 43 (439)
|+.....|.+|+.|+|...+ -+++|+|+.... +.. . ...|.|
T Consensus 3 ~~~~~~~f~~gekvl~~hg~-llYeAKVl~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~Y~V 81 (136)
T 2k3y_A 3 MVDLEQEFALGGRVLAFHGP-LMYEAKILKIWDPSSKMYTSIPNDKPGGSSQATKEIKPQKLGEDESIPEEIINGKSFFI 81 (136)
T ss_dssp CCGGGGSCCTTSEEEEECSS-CEEEEEEEEEEETTTTEEEECSSCCCTTCSCCCSSBCCCCSCSSCCCCHHHHTSCEEEE
T ss_pred ccccccccCCCCEEEEEECC-eeEEEEEEEEEeccccccccccccccccccccccccccccccccccCcccccccceEEE
Confidence 67777899999999999854 499999986532 000 0 238999
Q ss_pred EEecCCce--eeecCCCcccchh
Q psy6849 44 FFYGTRET--GICRQDELFPYTE 64 (439)
Q Consensus 44 ~FFGt~e~--Awv~~k~L~Py~e 64 (439)
.|-|.+.+ -||+.+.|..|.+
T Consensus 82 HY~GWn~rwDEWV~~dRil~~~e 104 (136)
T 2k3y_A 82 HYQGWKSSWDEWVGYDRIRAYNE 104 (136)
T ss_dssp CCTTSCGGGCEEEETTTEEESCH
T ss_pred EeCCcCCcceeeecHhhhhhCCH
Confidence 99996655 6999999999994
No 33
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=82.09 E-value=1.3 Score=36.26 Aligned_cols=56 Identities=20% Similarity=0.111 Sum_probs=44.2
Q ss_pred CCCccCcEEEEeccCCCCCCceecCCCCCCCCCceEEEEEecCC-ce-eeecCC--Ccccchh
Q psy6849 6 RKFKTNDKVFAKVRGYPPWPARIEGLADETPNRLKYHIFFYGTR-ET-GICRQD--ELFPYTE 64 (439)
Q Consensus 6 ~~fk~GDLVWAKvkGYP~WPArV~~~pevk~~~~ky~V~FFGt~-e~-Awv~~k--~L~Py~e 64 (439)
..|++|..|=|.-.--||.||.|..... ....|.|.|-|.. .+ -|+..+ +|+|+.-
T Consensus 18 ~~F~vGmkLEA~D~~~~~~~a~i~~v~~---~~~~v~VHfdGW~~~yDeWv~~dS~~I~P~g~ 77 (88)
T 2eqm_A 18 ITFEIGARLEALDYLQKWYPSRIEKIDY---EEGKMLVHFERWSHRYDEWIYWDSNRLRPLER 77 (88)
T ss_dssp CCCCSSCEEEEECTTSCEEEEEEEEEET---TTTEEEEEESSSTTTEEEEEETTSCCEECCCC
T ss_pred CcCCCCCEEEEEcCCCCeeEEEEEEEec---cCCEEEEEECCCCCcccEEeeCCCCcEecccc
Confidence 5799999999988666899999885421 3579999999944 33 699877 8999873
No 34
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=82.03 E-value=0.94 Score=34.73 Aligned_cols=53 Identities=11% Similarity=0.084 Sum_probs=43.2
Q ss_pred CCCccCcEEEEeccCCCCCCceecCCCCCCCCCceEEEEEecCCceeeecCCCcccc
Q psy6849 6 RKFKTNDKVFAKVRGYPPWPARIEGLADETPNRLKYHIFFYGTRETGICRQDELFPY 62 (439)
Q Consensus 6 ~~fk~GDLVWAKvkGYP~WPArV~~~pevk~~~~ky~V~FFGt~e~Awv~~k~L~Py 62 (439)
..|.+|+=|+|+...=-.-||.|+.... ....|.|+|+. +...|+..++|.+-
T Consensus 2 ~~f~~GedVLarwsDG~fYlGtI~~V~~---~~~~clV~F~D-~s~~W~~~kdi~~~ 54 (58)
T 4hcz_A 2 PRLWEGQDVLARWTDGLLYLGTIKKVDS---AREVCLVQFED-DSQFLVLWKDISPA 54 (58)
T ss_dssp CSCCTTCEEEEECTTSCEEEEEEEEEET---TTTEEEEEETT-SCEEEEEGGGEEEC
T ss_pred CccccCCEEEEEecCCCEEeEEEEEEec---CCCEEEEEEcC-CCeEEEEhHHcccc
Confidence 3689999999999888888999998642 34588998874 57889999998764
No 35
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=80.16 E-value=1.3 Score=34.80 Aligned_cols=54 Identities=13% Similarity=0.135 Sum_probs=43.4
Q ss_pred CCCccCcEEEEeccCC-CCCCceecCCCCCCCCCceEEEEEecCCceeeecCCCcccch
Q psy6849 6 RKFKTNDKVFAKVRGY-PPWPARIEGLADETPNRLKYHIFFYGTRETGICRQDELFPYT 63 (439)
Q Consensus 6 ~~fk~GDLVWAKvkGY-P~WPArV~~~pevk~~~~ky~V~FFGt~e~Awv~~k~L~Py~ 63 (439)
..|.+||.|.||.-|- -..||+|.+... ....|.|-|=. +..--|..++|.|--
T Consensus 11 ~~f~vgd~VmaRW~Gd~~yYparItSits---~~~~Y~VkfKd-gT~e~L~~kDIKp~~ 65 (68)
T 2dig_A 11 RKFADGEVVRGRWPGSSLYYEVEILSHDS---TSQLYTVKYKD-GTELELKENDIKSGP 65 (68)
T ss_dssp CSSCSSCEEEEECTTTCCEEEEEEEEEET---TTTEEEEECTT-SCEEEEETTTEECCC
T ss_pred eEeecCCEEEEEccCCccceEEEEEEecc---CCceEEEEecC-CCEEEechhccccCC
Confidence 6899999999998553 567999998863 56688898876 777888889988753
No 36
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=77.97 E-value=2.2 Score=33.47 Aligned_cols=54 Identities=13% Similarity=0.091 Sum_probs=43.8
Q ss_pred CCCccCcEEEEeccCCCCCCceecCCCCCCCCCceEEEEEecCCceeeecCCCcccch
Q psy6849 6 RKFKTNDKVFAKVRGYPPWPARIEGLADETPNRLKYHIFFYGTRETGICRQDELFPYT 63 (439)
Q Consensus 6 ~~fk~GDLVWAKvkGYP~WPArV~~~pevk~~~~ky~V~FFGt~e~Awv~~k~L~Py~ 63 (439)
..|++||-|.|....=-.-||.|..... ..+.+.|+|+. +...|+.-++|.++.
T Consensus 12 ~~f~vGddVLA~wtDGl~Y~gtI~~V~~---~~gtC~V~F~D-~s~~w~~~kdi~~~~ 65 (66)
T 2eqj_A 12 CKFEEGQDVLARWSDGLFYLGTIKKINI---LKQSCFIIFED-SSKSWVLWKDIQTGA 65 (66)
T ss_dssp CCSCTTCEEEEECTTSCEEEEEEEEEET---TTTEEEEEETT-TEEEEEETTTEECCC
T ss_pred ccccCCCEEEEEEccCcEEEeEEEEEcc---CCcEEEEEEcc-CCEEEEEeecccccC
Confidence 5799999999998776777899998753 35788888875 577899999998753
No 37
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=77.39 E-value=1.1 Score=39.35 Aligned_cols=53 Identities=21% Similarity=0.253 Sum_probs=39.9
Q ss_pred CCCccCcEEEEeccC-----CCCCCceecCCCCCCCCCceEEEEEec--CCceeeecCCCcccch
Q psy6849 6 RKFKTNDKVFAKVRG-----YPPWPARIEGLADETPNRLKYHIFFYG--TRETGICRQDELFPYT 63 (439)
Q Consensus 6 ~~fk~GDLVWAKvkG-----YP~WPArV~~~pevk~~~~ky~V~FFG--t~e~Awv~~k~L~Py~ 63 (439)
..|..||-|=+-.+. ..||+|+|... .+..|.|.|-| +.-.-||..+.|.|--
T Consensus 59 ~~f~~gd~VEV~~~~~d~ep~gWw~a~I~~~-----kg~f~~V~y~~~~~~~~EiV~~~rlR~~n 118 (128)
T 3h8z_A 59 KEITEGDEVEVYSRANEQEPCGWWLARVRMM-----KGDFYVIEYAACDATYNEIVTLERLRPVN 118 (128)
T ss_dssp -CCCTTCEEEEEECC---CCCEEEEEEEEEE-----ETTEEEEEETTC----CEEECGGGEEECC
T ss_pred cCCCCCCEEEEEecCCCCCcCccEEEEEEEe-----eCCEEEEEEcCCCCCcceEEehhheEeCC
Confidence 579999999887764 46999999887 56899999988 3345688888887754
No 38
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=75.33 E-value=2.2 Score=33.00 Aligned_cols=54 Identities=24% Similarity=0.152 Sum_probs=40.8
Q ss_pred CCCccCcEEEEeccCCCCCCceecCCCCCCCCCceEEEEEecCCc-e-eeecCC--Ccccc
Q psy6849 6 RKFKTNDKVFAKVRGYPPWPARIEGLADETPNRLKYHIFFYGTRE-T-GICRQD--ELFPY 62 (439)
Q Consensus 6 ~~fk~GDLVWAKvkGYP~WPArV~~~pevk~~~~ky~V~FFGt~e-~-Awv~~k--~L~Py 62 (439)
..|++|..|=|.-..-|++||.|..... ..+.+.|.|-|... + -|+..+ +|+|.
T Consensus 11 ~~F~vGmkLEa~d~~~p~~~AtV~~v~~---~~~~~~VhfdGw~~~~D~W~~~dS~~i~Pv 68 (69)
T 3sd4_A 11 ISFEVGAQLEARDRLKNWYPAHIEDIDY---EEGKVLIHFKRWNHRYDEWFCWDSPYLRPL 68 (69)
T ss_dssp CCCSTTCEEEEECTTSCEEEEEEEEEET---TTTEEEEEETTSCGGGCEEEETTCTTEECC
T ss_pred CCcCCCCEEEEEECCCCccccEEEEEec---cCCEEEEEeCCCCCCCCEEEcCCCCCeeEC
Confidence 5899999999988888889999997521 35789999999432 2 488764 46653
No 39
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.22 E-value=5.1 Score=32.82 Aligned_cols=55 Identities=9% Similarity=-0.029 Sum_probs=43.3
Q ss_pred cCCCccCcEEEEec----cCCCCCCceecCCCCCCCCCceEEEEEecCCce--eeecCCCcc
Q psy6849 5 ERKFKTNDKVFAKV----RGYPPWPARIEGLADETPNRLKYHIFFYGTRET--GICRQDELF 60 (439)
Q Consensus 5 ~~~fk~GDLVWAKv----kGYP~WPArV~~~pevk~~~~ky~V~FFGt~e~--Awv~~k~L~ 60 (439)
...|.+|+.|++.. .+=-|-+|.|...... .....|.|.|-|.+.+ -||+.+.|.
T Consensus 7 ~~~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~~~-~~~~~YyVHY~g~NkRlDEWV~~~rl~ 67 (87)
T 2eko_A 7 GGEIIEGCRLPVLRRNQDNEDEWPLAEILSVKDI-SGRKLFYVHYIDFNRRLDEWVTHERLD 67 (87)
T ss_dssp SCSCCTTCEEEBCEECTTCCEECCEEEEEEECCS-SSCCCEEEEECSSCSCCCEEECTTTBC
T ss_pred cccccCCCEEEEEEcccCCCCeEEEEEEEEEEEc-CCCcEEEEEeCCCCcccccccCHhHcc
Confidence 46899999999998 3556778999886432 2456899999996665 699999985
No 40
>3oa6_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3ob9_A*
Probab=66.99 E-value=2.2 Score=36.51 Aligned_cols=60 Identities=20% Similarity=0.255 Sum_probs=43.5
Q ss_pred cCCCccCcEEEEecc----CCCCCCceecCCCCCCC----CCceEEEEEecCCce--eeecCCCcccchh
Q psy6849 5 ERKFKTNDKVFAKVR----GYPPWPARIEGLADETP----NRLKYHIFFYGTRET--GICRQDELFPYTE 64 (439)
Q Consensus 5 ~~~fk~GDLVWAKvk----GYP~WPArV~~~pevk~----~~~ky~V~FFGt~e~--Awv~~k~L~Py~e 64 (439)
...|.+|+.|++-=. |--.+-|+|+.....+. ....|.|.|-|.+.+ -||+.+.|..|.+
T Consensus 17 k~~F~~gEkVLc~h~d~~kg~llYeAKIl~v~~~~~~~~~~~~~Y~VHY~GWn~~WDEWV~~drllk~ne 86 (110)
T 3oa6_A 17 KFKFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHVLRDTD 86 (110)
T ss_dssp -CCSCTTCEEEEECSCTTSCCCEEEEEEEEEEEEECTTCCEEEEEEEEETTSCGGGCEEEEGGGEEECCH
T ss_pred CcccCCCCEEEEEecCCCCCcccEEEEEEEEEeccCCcCCcccEEEEEECCcCcchhhccChhhhhcCCH
Confidence 357999999999432 44457899987632111 123699999997655 5999999999984
No 41
>3m9p_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3oa6_A* 3ob9_A*
Probab=65.92 E-value=2.6 Score=36.10 Aligned_cols=59 Identities=20% Similarity=0.251 Sum_probs=43.8
Q ss_pred CCCccCcEEEEeccC----CCCCCceecCCCCCCCC----CceEEEEEecCCce--eeecCCCcccchh
Q psy6849 6 RKFKTNDKVFAKVRG----YPPWPARIEGLADETPN----RLKYHIFFYGTRET--GICRQDELFPYTE 64 (439)
Q Consensus 6 ~~fk~GDLVWAKvkG----YP~WPArV~~~pevk~~----~~ky~V~FFGt~e~--Awv~~k~L~Py~e 64 (439)
..|.+|+.|++.-.+ =-|.+|.|+......+. ...|.|.|.|.+.+ -||+.+.|+.|.+
T Consensus 18 ~~F~~GEkVLc~hgd~~k~~~lYeAKIl~v~~~~~~~g~~~~~Y~VHY~GWn~~wDEWV~e~rllk~~e 86 (110)
T 3m9p_A 18 FKFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHVLRDTD 86 (110)
T ss_dssp CCSCTTCEEEEECSCTTSCCCEEEEEEEEEEEEECTTCCEEEEEEEEETTSCGGGCEEEEGGGEEECCH
T ss_pred CcccCCCEEEEEcCCCCCCCCceeeEEEEEEeccCcccccceEEEEEECCCCcchhhccCHhhhhcCCH
Confidence 579999999997443 23568999887432111 25799999996644 6999999999984
No 42
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=65.59 E-value=3.1 Score=35.99 Aligned_cols=54 Identities=11% Similarity=0.153 Sum_probs=41.9
Q ss_pred CCCccCcEEEEeccCCCCCCceecCCCCCCCCCceEEEEEecCCceeeecCCCcccch
Q psy6849 6 RKFKTNDKVFAKVRGYPPWPARIEGLADETPNRLKYHIFFYGTRETGICRQDELFPYT 63 (439)
Q Consensus 6 ~~fk~GDLVWAKvkGYP~WPArV~~~pevk~~~~ky~V~FFGt~e~Awv~~k~L~Py~ 63 (439)
..+.+|+.||||-+.=..-.|.|.... ....|.|.|-.-.-.-++.|.+|.-+.
T Consensus 4 ~~v~vGq~V~akh~ngryy~~~V~~~~----~~~~y~V~F~DgS~s~dl~peDIvs~d 57 (118)
T 2qqr_A 4 QSITAGQKVISKHKNGRFYQCEVVRLT----TETFYEVNFDDGSFSDNLYPEDIVSQD 57 (118)
T ss_dssp SCCCTTCEEEEECTTSSEEEEEEEEEE----EEEEEEEEETTSCEEEEECGGGBCSSC
T ss_pred ceeccCCEEEEECCCCCEEeEEEEEEe----eEEEEEEEcCCCCccCCCCHhhccccc
Confidence 478999999999987777799999873 235677887754444588899988766
No 43
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=64.88 E-value=2.4 Score=35.81 Aligned_cols=60 Identities=18% Similarity=0.247 Sum_probs=45.5
Q ss_pred cCCCccCcEEEEecc----CCCCCCceecCCCCCC----CCCceEEEEEecCCce--eeecCCCcccchh
Q psy6849 5 ERKFKTNDKVFAKVR----GYPPWPARIEGLADET----PNRLKYHIFFYGTRET--GICRQDELFPYTE 64 (439)
Q Consensus 5 ~~~fk~GDLVWAKvk----GYP~WPArV~~~pevk----~~~~ky~V~FFGt~e~--Awv~~k~L~Py~e 64 (439)
...|.+|+.|++--. |=-++.|+|....... .....|.|.|-|.+.+ -||+.+.|..|.+
T Consensus 17 ~~~f~~GEkVLc~h~d~~kg~~lYeAKIl~v~~~~~~~~~~~~~Y~VHY~GWn~rwDEWV~edRilk~~e 86 (101)
T 3m9q_A 17 TPLFHKGEIVLCYEPDKSKARVLYTSKVLNVFERRNEHGLRFYEYKIHFQGWRPSYDRAVRATVLLKDTE 86 (101)
T ss_dssp CCCCCTTCEEEEECCCTTSCCCEEEEEEEEEEEEECTTSCEEEEEEEEETTSCGGGCEEECGGGEEECCH
T ss_pred CCcccCCCEEEEEecCCCCCCcceEeEEEEEEecCCccccCceEEEEEeCCCCcCceeecCHHHcccCCH
Confidence 357999999999774 4556789998874321 1235799999996654 6999999999984
No 44
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=63.74 E-value=1.8 Score=34.46 Aligned_cols=58 Identities=17% Similarity=0.146 Sum_probs=43.7
Q ss_pred cCCCccCcEEEEeccC---CCCCCceecCCCCCCCCCceEEEEEecCCce--eeecCCCcccch
Q psy6849 5 ERKFKTNDKVFAKVRG---YPPWPARIEGLADETPNRLKYHIFFYGTRET--GICRQDELFPYT 63 (439)
Q Consensus 5 ~~~fk~GDLVWAKvkG---YP~WPArV~~~pevk~~~~ky~V~FFGt~e~--Awv~~k~L~Py~ 63 (439)
...|.+|+.|++.... --|.||.|..... ......|.|.|-|-+.+ -||+.+.|..+.
T Consensus 3 ~~~~~vGekV~~~~~d~k~~~~y~AkIl~i~~-~~~~~~Y~VHY~gwnkr~DEWV~~~ri~~~~ 65 (76)
T 2lcc_A 3 MEPCLTGTKVKVKYGRGKTQKIYEASIKSTEI-DDGEVLYLVHYYGWNVRYDEWVKADRIIWPL 65 (76)
T ss_dssp CCCSSTTCEEEEEEEETTEEEEEEEEEEEEEE-ETTEEEEEEEETTSCCSSCEEEEGGGEECSS
T ss_pred ccccCCCCEEEEEeCCCCCCCEEEEEEEEEEc-cCCceEEEEEeCCcCCCceEecChhhccccc
Confidence 4589999999999862 2467899987532 22345799999995544 699999998776
No 45
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=62.05 E-value=5.1 Score=36.18 Aligned_cols=53 Identities=13% Similarity=0.125 Sum_probs=45.2
Q ss_pred CCccCcEEEEecc-CCCCCCceecCCCCCCCCCceEEEEEecCCceeeecCCCcccchh
Q psy6849 7 KFKTNDKVFAKVR-GYPPWPARIEGLADETPNRLKYHIFFYGTRETGICRQDELFPYTE 64 (439)
Q Consensus 7 ~fk~GDLVWAKvk-GYP~WPArV~~~pevk~~~~ky~V~FFGt~e~Awv~~k~L~Py~e 64 (439)
.+++|+++-|+.. .--|..|+|.... .+.+.|+|..-+.+..|+.++|.+...
T Consensus 51 ~~~~g~~c~a~~~~d~~wyRa~V~~v~-----~~~~~V~~vDyG~~~~v~~~~l~~l~~ 104 (218)
T 2wac_A 51 TPKRGDLVAAQFTLDNQWYRAKVERVQ-----GSNATVLYIDYGNKETLPTNRLAALPP 104 (218)
T ss_dssp CCCTTCEEEEECTTTCCEEEEEEEEEE-----TTEEEEEETTTCCEEEEEGGGEEECCG
T ss_pred cCCcCCEEEEEECCCCeEEEEEEEEec-----CCeEEEEEEecCCeEEEchHHcccCCh
Confidence 4788999999996 4578899999873 378999999989999999999998874
No 46
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=60.00 E-value=5.3 Score=37.17 Aligned_cols=55 Identities=16% Similarity=0.180 Sum_probs=46.4
Q ss_pred CCCccCcEEEEeccCCCCCCceecCCCCCCCCCceEEEEEecCCceeeecCCCcccchh
Q psy6849 6 RKFKTNDKVFAKVRGYPPWPARIEGLADETPNRLKYHIFFYGTRETGICRQDELFPYTE 64 (439)
Q Consensus 6 ~~fk~GDLVWAKvkGYP~WPArV~~~pevk~~~~ky~V~FFGt~e~Awv~~k~L~Py~e 64 (439)
...++|+++.|+...--|.-|+|.... ..+.+.|+|..-+.+.+|+.++|.+...
T Consensus 64 ~~~~~G~~c~a~~~d~~wyRa~V~~~~----~~~~~~V~~vDyGn~~~v~~~~lr~l~~ 118 (246)
T 2hqx_A 64 YAPRRGEFCIAKFVDGEWYRARVEKVE----SPAKIHVFYIDYGNREVLPSTRLGTLSP 118 (246)
T ss_dssp CCCCTTCEEEEECTTSCEEEEEEEEEE----ETTEEEEEETTTCCEEEECGGGEECCCG
T ss_pred CCCCCCCEEEEEcCCCCEEEEEEEEEc----CCCeEEEEEEeCCCeEEEeHHHhhcCCH
Confidence 356899999999965578899999873 2368999999999999999999999874
No 47
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=59.58 E-value=3.9 Score=35.81 Aligned_cols=55 Identities=7% Similarity=0.089 Sum_probs=41.5
Q ss_pred CCCccCcEEEEeccCCCCCCceecCCCCC-CCCCceEEEEEecCCce--eeecCCCcc
Q psy6849 6 RKFKTNDKVFAKVRGYPPWPARIEGLADE-TPNRLKYHIFFYGTRET--GICRQDELF 60 (439)
Q Consensus 6 ~~fk~GDLVWAKvkGYP~WPArV~~~pev-k~~~~ky~V~FFGt~e~--Awv~~k~L~ 60 (439)
..|.+|+.|+++...--|.+|.|+..... ......|.|.|-|.+.+ -||+.+.|.
T Consensus 11 ~~~~vGe~v~~~~~d~~~y~AkIl~i~~~~~~~~~~YyVHY~gwNkR~DEWV~~~ri~ 68 (133)
T 1wgs_A 11 VTVEIGETYLCRRPDSTWHSAEVIQSRVNDQEGREEFYVHYVGFNRRLDEWVDKNRLA 68 (133)
T ss_dssp CCCCTTSEEEEEETTTEEEEEEEEEEEEETTTTEEEEEEECTTTCSSCCEEECTTTSC
T ss_pred cccCCCCEEEEEeCCCCEEEEEEEEEEeccCCCceEEEEeccCcCCCceeecChhhcc
Confidence 46999999999986346779999875321 12346899999996654 699999884
No 48
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=56.43 E-value=12 Score=30.10 Aligned_cols=52 Identities=12% Similarity=0.099 Sum_probs=42.1
Q ss_pred CCCccCcEEEEeccCCCCCCceecCCCCCCCCCceEEEEEecCCceeeecCCCccc
Q psy6849 6 RKFKTNDKVFAKVRGYPPWPARIEGLADETPNRLKYHIFFYGTRETGICRQDELFP 61 (439)
Q Consensus 6 ~~fk~GDLVWAKvkGYP~WPArV~~~pevk~~~~ky~V~FFGt~e~Awv~~k~L~P 61 (439)
..|..|+=|+|+...=-..+|.|+.... ....+.|+|+ ++...|+.-++|.+
T Consensus 25 ~~f~eGeDVLarwsDGlfYLGTI~kV~~---~~e~ClV~F~-D~S~~W~~~kdi~~ 76 (79)
T 2m0o_A 25 PRLWEGQDVLARWTDGLLYLGTIKKVDS---AREVCLVQFE-DDSQFLVLWKDISP 76 (79)
T ss_dssp CCCCTTCEEEBCCTTSCCCEEEEEEEET---TTTEEEEEET-TSCEEEEETTTBCC
T ss_pred ceeccCCEEEEEecCCCEEeEEEEEecc---CCCEEEEEEc-CCCeEEEEeecccc
Confidence 5799999999999888888999996642 3457778765 56888999999875
No 49
>2yrv_A AT-rich interactive domain-containing protein 4A; ARID domain-containing protein 4A, retinoblastoma-binding protein 1, RBBP-1, structural genomics; NMR {Homo sapiens}
Probab=55.95 E-value=9.7 Score=32.95 Aligned_cols=79 Identities=10% Similarity=-0.071 Sum_probs=56.9
Q ss_pred cCcEEEEec--cCCCCCCceecCCC---CCCCCCceEEEEEecCCceeeecCCCcccchhhhhhhCCCCChHHHHHHHHH
Q psy6849 10 TNDKVFAKV--RGYPPWPARIEGLA---DETPNRLKYHIFFYGTRETGICRQDELFPYTEFKDKYGKGVKRKFFTEALQE 84 (439)
Q Consensus 10 ~GDLVWAKv--kGYP~WPArV~~~p---evk~~~~ky~V~FFGt~e~Awv~~k~L~Py~e~kekf~K~~Krk~F~eAl~E 84 (439)
+|-+|-... +.-.|.||.|+.+. ++.-...+|.|+=|-+..|+-|..++|.-|..... ++--..++.|+..
T Consensus 13 lGkVV~V~~~~kk~~WfPALVVsPs~~d~v~vkKd~~LVRSFkDgKf~sV~rkdv~e~~~~~~----~k~d~slK~a~d~ 88 (117)
T 2yrv_A 13 LGKVVSVVSATERTEWYPALVISPSCNDDITVKKDQCLVRSFIDSKFYSIARKDIKEVDILNL----PESELSTKPGLQK 88 (117)
T ss_dssp TTSEEEEECSSCSSCEEEEEEECCSSCSSCCCCTTCEEEEESSSCCEEEECTTTEECCCSTTS----CHHHHHHCHHHHH
T ss_pred cCcEEEEecCCCCCceeeeEEECCCCCCCeeeccceEEEEeeccCeEEEEEhHhhhhcccccc----ccCchhHHHHHHH
Confidence 555665554 34578999999884 23334679999999999999999999998873211 1112356788999
Q ss_pred HHHHhCCC
Q psy6849 85 IECDFGTP 92 (439)
Q Consensus 85 aee~l~n~ 92 (439)
|..++.+.
T Consensus 89 A~~fl~~~ 96 (117)
T 2yrv_A 89 ASIFLKTR 96 (117)
T ss_dssp HHHHHHTC
T ss_pred HHHHHhcC
Confidence 99888764
No 50
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Probab=55.13 E-value=8.4 Score=34.82 Aligned_cols=48 Identities=15% Similarity=0.070 Sum_probs=36.3
Q ss_pred CCccCcEEEEeccCCCCC-CceecCCCCCCCCCceEEEEEecCCceeeecCCCc
Q psy6849 7 KFKTNDKVFAKVRGYPPW-PARIEGLADETPNRLKYHIFFYGTRETGICRQDEL 59 (439)
Q Consensus 7 ~fk~GDLVWAKvkGYP~W-PArV~~~pevk~~~~ky~V~FFGt~e~Awv~~k~L 59 (439)
.-.+|.-||||...-..| ||.|.... ..++|.|.|..- ..+-|..++|
T Consensus 8 ~~~iG~rVfArWsd~~yyYpG~V~~~~----~~~~Y~V~FdDG-~~k~v~~~di 56 (156)
T 1ssf_A 8 NSFVGLRVVAKWSSNGYFYSGKITRDV----GAGKYKLLFDDG-YECDVLGKDI 56 (156)
T ss_dssp CCSTTCEEEECSSCSSEEEEEEEEECC----TTTEEEEECTTS-CEEEEETTTE
T ss_pred cchhccEEEEEcCCCCcccccEEEEec----cCCEEEEEEcCC-CeeEeeccce
Confidence 347899999999999999 99999753 568899998864 4444543333
No 51
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=53.06 E-value=7.6 Score=32.05 Aligned_cols=53 Identities=8% Similarity=0.070 Sum_probs=41.3
Q ss_pred CCCccCcEEEEeccCCCCCCceecCCCCCCCCCceEEEEEecCCce--eeecCCCcc
Q psy6849 6 RKFKTNDKVFAKVRGYPPWPARIEGLADETPNRLKYHIFFYGTRET--GICRQDELF 60 (439)
Q Consensus 6 ~~fk~GDLVWAKvkGYP~WPArV~~~pevk~~~~ky~V~FFGt~e~--Awv~~k~L~ 60 (439)
..|.+|+.|+++- +=-|-+|.|+..... .....|.|.|-|-+.+ -||+.+.|-
T Consensus 22 ~~~~vG~kv~v~~-~~~~y~AkIl~ir~~-~~~~~YyVHY~g~NkRlDEWV~~~rl~ 76 (92)
T 2ro0_A 22 DDIIIKCQCWVQK-NDEERLAEILSINTR-KAPPKFYVHYVNYNKRLDEWITTDRIN 76 (92)
T ss_dssp TSCCTTCEEEEEE-TTEEEEEEEEEEECS-SSSCEEEEEETTSCTTSCEEEEGGGEE
T ss_pred ccccCCCEEEEEE-CCEEEEEEEEEEEEc-CCCcEEEEEeCCcCcccccccCHhHcc
Confidence 4699999999996 446778999876432 2456899999997666 699999884
No 52
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=50.75 E-value=5.7 Score=34.60 Aligned_cols=55 Identities=13% Similarity=0.218 Sum_probs=41.5
Q ss_pred cCCCccCcEEEEeccCCCCCCceecCCCCCCCCCceEEEEEecCCceeeecCCCcccch
Q psy6849 5 ERKFKTNDKVFAKVRGYPPWPARIEGLADETPNRLKYHIFFYGTRETGICRQDELFPYT 63 (439)
Q Consensus 5 ~~~fk~GDLVWAKvkGYP~WPArV~~~pevk~~~~ky~V~FFGt~e~Awv~~k~L~Py~ 63 (439)
...+.+|+.||||-+.=..-.|.|.... ....|.|.|-.-.-.-++.|.+|.-+.
T Consensus 4 ~~~v~vGq~V~ak~~ngryy~~~V~~~~----~~~~y~V~F~DgS~s~dl~PedIvs~d 58 (123)
T 2xdp_A 4 EKVISVGQTVITKHRNTRYYSCRVMAVT----SQTFYEVMFDDGSFSRDTFPEDIVSRD 58 (123)
T ss_dssp CCCCCTTCCCCCCCCCCCCCCCEEEEEE----EEEEEEEEETTSCEEEEECGGGBCSSC
T ss_pred ccccccCCEEEEECCCCcEEeEEEEEEe----eEEEEEEEcCCCCccCCCCHhHccccc
Confidence 4578999999999987777789998874 234577777754444588899997665
No 53
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=50.70 E-value=16 Score=28.91 Aligned_cols=52 Identities=19% Similarity=0.232 Sum_probs=41.6
Q ss_pred CCCccCcEEEEeccCCCCCCceecCCCCCCCCCceEEEEEecCCceeeecCCCcccch
Q psy6849 6 RKFKTNDKVFAKVRGYPPWPARIEGLADETPNRLKYHIFFYGTRETGICRQDELFPYT 63 (439)
Q Consensus 6 ~~fk~GDLVWAKvkGYP~WPArV~~~pevk~~~~ky~V~FFGt~e~Awv~~k~L~Py~ 63 (439)
..|..|+=|++|...=-...|.|++. ...++.|+|. ++...|+..++|.-+.
T Consensus 14 ~~~~~geDVL~rw~DG~fYLGtIVd~-----~~~~ClV~Fe-D~S~~Wv~~kdi~kl~ 65 (69)
T 2xk0_A 14 VTYALQEDVFIKCNDGRFYLGTIIDQ-----TSDQYLIRFD-DQSEQWCEPDKLRKLG 65 (69)
T ss_dssp CCCCTTCEEEEECTTSCEEEEEEEEE-----CSSCEEEEET-TCCEEEECTTTEECSS
T ss_pred cccccCCeEEEEecCCCEEEEEEEec-----CCceEEEEec-CCcceeeeHHHHHhhc
Confidence 68999999999998777778999765 3567777765 5678899999997554
No 54
>3e9g_A Chromatin modification-related protein EAF3; chromatin remodeling, chromo domain, transcription factor, transcription regulation; 2.50A {Saccharomyces cerevisiae} PDB: 2k3x_A 3e9f_A*
Probab=49.26 E-value=16 Score=32.14 Aligned_cols=63 Identities=21% Similarity=0.276 Sum_probs=43.6
Q ss_pred CccccCCCccCcEEEEeccCCCCCCceecCCCCC--C-----------------------------------CCCceEEE
Q psy6849 1 MPAVERKFKTNDKVFAKVRGYPPWPARIEGLADE--T-----------------------------------PNRLKYHI 43 (439)
Q Consensus 1 m~~~~~~fk~GDLVWAKvkGYP~WPArV~~~pev--k-----------------------------------~~~~ky~V 43 (439)
|.-+.-.|++|+.|.|--++-+ -.|+|+...+. + ...-.|.|
T Consensus 1 ~~~~~p~f~~gE~VlcfHg~~~-YeAKIl~i~d~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~Y~V 79 (130)
T 3e9g_A 1 MVDLEQEFALGGRCLAFHGPLM-YEAKILKIWDPSSKMYTSIPNDKPGGSSQATKEIKPQKLGEDESIPEEIINGKCFFI 79 (130)
T ss_dssp ------CCCTTCEEEEEETTEE-EEEEEEEEEETTTTEEEECC--------------CCBCCCTTCCCCTTTTTSCEEEE
T ss_pred CCCccccccCCCEEEEEeCCcc-eeeEEEEeeCCCcceeecccccccccccccccccccccccccccCchhhccCceEEE
Confidence 5666778999999999888875 57887766210 0 01237999
Q ss_pred EEecCCce--eeecCCCcccchh
Q psy6849 44 FFYGTRET--GICRQDELFPYTE 64 (439)
Q Consensus 44 ~FFGt~e~--Awv~~k~L~Py~e 64 (439)
.|.|.+.+ -||+.+.|..|.+
T Consensus 80 HY~GWn~~WDEWV~e~rvlk~~e 102 (130)
T 3e9g_A 80 HYQGWKSSWDEWVGYDRIRAYNE 102 (130)
T ss_dssp EETTSCGGGCEEEETTTEECSSH
T ss_pred EeCCCCCChhhccCHhhhhccCH
Confidence 99997655 7999999999985
No 55
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.11 E-value=25 Score=27.29 Aligned_cols=55 Identities=5% Similarity=0.021 Sum_probs=42.8
Q ss_pred cCCCccCcEEEEeccCCCCCCceecCCCCCCCCCceEEEEEecCCceeeecCCCcccch
Q psy6849 5 ERKFKTNDKVFAKVRGYPPWPARIEGLADETPNRLKYHIFFYGTRETGICRQDELFPYT 63 (439)
Q Consensus 5 ~~~fk~GDLVWAKvkGYP~WPArV~~~pevk~~~~ky~V~FFGt~e~Awv~~k~L~Py~ 63 (439)
...|..|+=|.|+-+.=-..||.|..... ....+.|+|+ ++.-.|+.-++|.+..
T Consensus 5 ~~~f~eGqdVLarWsDGlfYlgtV~kV~~---~~~~ClV~Fe-D~s~~wv~~kdi~~~~ 59 (63)
T 2e5q_A 5 SSGLTEGQYVLCRWTDGLYYLGKIKRVSS---SKQSCLVTFE-DNSKYWVLWKDIQHAG 59 (63)
T ss_dssp CCCCCTTCEEEEECTTSCEEEEEECCCCS---TTSEEEEEET-TSCEEEEEGGGEECCS
T ss_pred ccceecCCEEEEEecCCCEEEEEEEEEec---CCCEEEEEEc-cCceeEEEeecccccC
Confidence 35799999999998887788999998753 2355667765 5678899999988654
No 56
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3
Probab=48.03 E-value=18 Score=30.07 Aligned_cols=58 Identities=7% Similarity=0.100 Sum_probs=44.1
Q ss_pred CCccCcEEEEeccCCCCCCceecCCCCCC--CCCceEEEEEecCCce--eeecCCCcccchh
Q psy6849 7 KFKTNDKVFAKVRGYPPWPARIEGLADET--PNRLKYHIFFYGTRET--GICRQDELFPYTE 64 (439)
Q Consensus 7 ~fk~GDLVWAKvkGYP~WPArV~~~pevk--~~~~ky~V~FFGt~e~--Awv~~k~L~Py~e 64 (439)
.-.+|..|+++.++=-|-+|.|....... +....|.|.|-|.+.+ -||+.+.|..+.+
T Consensus 14 ~~~~~e~vlc~~~dg~~yeAeIl~ir~~~~~~~~~~YYVHY~g~NkRlDEWV~~~RL~~~~~ 75 (92)
T 2bud_A 14 SENPDKIYFIRREDGTVHRGQVLQSRTTENAAAPDEYYVHYVGLNRRLDGWVGRHRISDNAD 75 (92)
T ss_dssp TTCTTSCEEEECTTSCEEEEEEEEEECTTTCSSCCEEEEECSSSCTTTCEEEETTTEESCHH
T ss_pred cCCCCCEEEEEeCCCCEEEEEEEEEeeccCCCCCcEEEEEeCCcccccccccCHHHhchhcc
Confidence 33457799999966677899998864322 2346899999996665 6999999998774
No 57
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=47.70 E-value=12 Score=31.04 Aligned_cols=53 Identities=8% Similarity=0.070 Sum_probs=41.2
Q ss_pred CCCccCcEEEEeccCCCCCCceecCCCCCCCCCceEEEEEecCCce--eeecCCCcc
Q psy6849 6 RKFKTNDKVFAKVRGYPPWPARIEGLADETPNRLKYHIFFYGTRET--GICRQDELF 60 (439)
Q Consensus 6 ~~fk~GDLVWAKvkGYP~WPArV~~~pevk~~~~ky~V~FFGt~e~--Awv~~k~L~ 60 (439)
..|.+|+.|++.- +=-|-+|.|+..... .....|.|.|-|-+.+ -||+.+.|-
T Consensus 24 ~~~~vG~kv~v~~-~~~~yeAeIl~ir~~-~g~~~YYVHY~g~NkRlDEWV~~~RI~ 78 (94)
T 2rnz_A 24 DDIIIKCQCWVQK-NDEERLAEILSINTR-KAPPKFYVHYVNYNKRLDEWITTDRIN 78 (94)
T ss_dssp GGCCTTEEEEEEC-SSCEEEEEEEEEECS-SSSCEEEEECTTSCSTTCEEEETTTBC
T ss_pred ccccCCCEEEEEE-CCEEEEEEEEEEEEc-CCCcEEEEEeCCcCcccccccCHHHcc
Confidence 4689999999995 446778999876432 2456899999996665 699999984
No 58
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.23 E-value=21 Score=29.18 Aligned_cols=58 Identities=12% Similarity=0.075 Sum_probs=48.5
Q ss_pred cCCCccCcEEEEeccCC-CCCCceecCCCCCCCCCceEEEEEecCCceeeecCCCcccchhhh
Q psy6849 5 ERKFKTNDKVFAKVRGY-PPWPARIEGLADETPNRLKYHIFFYGTRETGICRQDELFPYTEFK 66 (439)
Q Consensus 5 ~~~fk~GDLVWAKvkGY-P~WPArV~~~pevk~~~~ky~V~FFGt~e~Awv~~k~L~Py~e~k 66 (439)
...+++|++|=||+.-= -|-=|+|+... ..+++.|.|+.-+...-|+...|.|+.+..
T Consensus 19 ~~~~k~g~~vaak~~d~n~WyRakV~~v~----~~~~veVl~~DyGn~~~V~~~~LR~L~~~l 77 (85)
T 2eqk_A 19 PVKWENDMHCAVKIQDKNQWRRGQIIRMV----TDTLVEVLLYDVGVELVVNVDCLRKLEENL 77 (85)
T ss_dssp CCCCCSSCEEEEECSSSCCEEEEEEEEEC----SSSEEEEECTTTCCEEEEETTTEEECCHHH
T ss_pred ccCccCCCEEEEEeCCCCeEEEEEEEEec----CCCeEEEEEEccCCEEEEEccccccCCHHH
Confidence 35789999999997433 78889999874 457899999999999999999999998653
No 59
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=39.99 E-value=20 Score=31.66 Aligned_cols=80 Identities=14% Similarity=0.049 Sum_probs=53.0
Q ss_pred CCCccCcEEEEecc-CCCCCCceecCCCCCCCCCceEEEEEecCCceeeecCCCcccchhhhhhhC---CCC------Ch
Q psy6849 6 RKFKTNDKVFAKVR-GYPPWPARIEGLADETPNRLKYHIFFYGTRETGICRQDELFPYTEFKDKYG---KGV------KR 75 (439)
Q Consensus 6 ~~fk~GDLVWAKvk-GYP~WPArV~~~pevk~~~~ky~V~FFGt~e~Awv~~k~L~Py~e~kekf~---K~~------Kr 75 (439)
..+++|+++-|+.. .--|..|+|.... ..+.+.|+|..-+.+..+ ++|.+.......+- ..+ -.
T Consensus 46 ~~~~~G~~c~A~~~~d~~wyRa~I~~~~----~~~~~~V~fvDyGn~~~v--~~lr~l~~~f~~lP~qA~~c~L~~v~~~ 119 (169)
T 3ntk_A 46 SDLKEGALCVAQFPEDEVFYRAQIRKVL----DDGKCEVHFIDFGNNAVT--QQFRQLPEELAKPARYSRHCELDASTIS 119 (169)
T ss_dssp CCCCTTCEEEEEETTTTEEEEEEEEEEC----STTCEEEEETTTTEEEEE--SCEECCCHHHHSSCCSSEEEEECGGGSC
T ss_pred CCCCCCCEEEEEECCCCcEEEEEEEEEC----CCCEEEEEEEecCCeEEh--hhhhccCHHHhhCCceeEEEEECCcCCC
Confidence 46889999999983 4568899999874 235799999776666664 78988875433221 011 12
Q ss_pred HHHHHHHHHHHHHhCC
Q psy6849 76 KFFTEALQEIECDFGT 91 (439)
Q Consensus 76 k~F~eAl~Eaee~l~n 91 (439)
....+|+......+.+
T Consensus 120 ~~~~ea~~~f~~l~~~ 135 (169)
T 3ntk_A 120 KCDAALLQSFIDTRFS 135 (169)
T ss_dssp HHHHHHHHHHHHTTTT
T ss_pred CChHHHHHHHHHHhCC
Confidence 3356677666655544
No 60
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=39.68 E-value=1e+02 Score=26.99 Aligned_cols=78 Identities=12% Similarity=0.117 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHhhCCCCCC-HHHHHHHHHhhcCCCCChH---HhhhCchHHHHHHHhhhhccCccccccCHHHHHHhhh
Q psy6849 300 VCILDIDLRIKDSIGLEHAD-CDECLKALDDLINLPITPL---VLKKHPEIVDTCRRLQRYTGNIAEWTMTEEEAEVFTQ 375 (439)
Q Consensus 300 ~~l~~l~~~ik~sL~~~~~d-v~~cl~aLdel~~L~vt~~---mL~k~~e~V~tirklrry~gn~~~w~~~~~~~~~f~~ 375 (439)
..+.++-.-|-.-|.-..++ +-|||.+|+-|..= =+.. -+++|.. .||.|+.|.|--+.-+= +.
T Consensus 45 ~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~-Gs~~f~~~~r~~~~---~Ik~l~~F~g~~dp~~G--------~d 112 (140)
T 1vdy_A 45 SIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGK-SGSEFRREMQRNSV---AVRNLFHYKGHPDPLKG--------DA 112 (140)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTT-SCHHHHHHHHHTTH---HHHTTTTCCCCCCTTTS--------SC
T ss_pred hHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHh-CCHHHHHHHHHhHH---HHHHHHhcCCCCCcccc--------cc
Confidence 33456666666666654444 45788888887642 2333 3455554 56668989885321010 23
Q ss_pred hHHHHHHHHHHHHH
Q psy6849 376 KASQVRAKADHVYN 389 (439)
Q Consensus 376 ~a~~Ir~kA~~ly~ 389 (439)
.-+.||.+|..|.+
T Consensus 113 ~g~~VR~~AkEl~~ 126 (140)
T 1vdy_A 113 LNKAVRETAHETIS 126 (140)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 46899999999975
No 61
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.02 E-value=43 Score=26.29 Aligned_cols=55 Identities=11% Similarity=0.079 Sum_probs=44.0
Q ss_pred cCCCccCcEEEEeccCCCCCCceecCCCCCCCCCceEEEEEecCCceeeecCCCcccch
Q psy6849 5 ERKFKTNDKVFAKVRGYPPWPARIEGLADETPNRLKYHIFFYGTRETGICRQDELFPYT 63 (439)
Q Consensus 5 ~~~fk~GDLVWAKvkGYP~WPArV~~~pevk~~~~ky~V~FFGt~e~Awv~~k~L~Py~ 63 (439)
...|..|+=|.|+...=-..|+.|..... ....+.|.|+ ++.-.|+.-++|.+..
T Consensus 7 ~~~f~eGqdVLarWsDGlfYlGtV~kV~~---~~~~ClV~Fe-D~s~~wv~~kdi~~~~ 61 (68)
T 2e5p_A 7 GPRLWEGQDVLARWTDGLLYLGTIKKVDS---AREVCLVQFE-DDSQFLVLWKDISPAA 61 (68)
T ss_dssp CCCCCTTCEEEEECTTSSEEEEEEEEEET---TTTEEEEEET-TTEEEEEETTTEECCC
T ss_pred CcccccCCEEEEEecCCcEEEeEEEEEec---CCcEEEEEEc-cCCeeeeeeecccccc
Confidence 46899999999999887788999988753 2356777765 5688899999998876
No 62
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=31.86 E-value=34 Score=30.86 Aligned_cols=57 Identities=12% Similarity=0.004 Sum_probs=45.1
Q ss_pred CCCccCcEEEEeccCC-CCCCceecCCCCCCCCCceEEEEEecCCceeeecCCCcccchhhh
Q psy6849 6 RKFKTNDKVFAKVRGY-PPWPARIEGLADETPNRLKYHIFFYGTRETGICRQDELFPYTEFK 66 (439)
Q Consensus 6 ~~fk~GDLVWAKvkGY-P~WPArV~~~pevk~~~~ky~V~FFGt~e~Awv~~k~L~Py~e~k 66 (439)
...++|+++-|+...- -|-=|+|.... ..+.+.|+|..-+.+..|+.++|.+.....
T Consensus 64 ~~~~~G~~c~a~~~~d~~wyRa~V~~~~----~~~~~~V~~vDyG~~~~v~~~~l~~l~~~f 121 (201)
T 4b9w_A 64 FKAEIGRPCCAFFSGDGNWYRALVKEIL----PSGNVKVHFVDYGNVEEVTTDQLQAILPQF 121 (201)
T ss_dssp CCCCTTCEEEEEETTTTEEEEEEEEEEC----TTSCEEEEETTTCCEEEECGGGEEECCGGG
T ss_pred CCCCCCCEEEEEECCCCeEEEEEEEEEC----CCCeEEEEEEccCCEEEEEHHHhccChHhH
Confidence 3567899999998643 46678888753 346799999999999999999999887543
No 63
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=30.82 E-value=27 Score=36.78 Aligned_cols=57 Identities=16% Similarity=0.141 Sum_probs=47.6
Q ss_pred CCCccCcEEEEeccCCCCCCceecCCCCCCCCCceEEEEEecCCceeeecCCCcccchhhh
Q psy6849 6 RKFKTNDKVFAKVRGYPPWPARIEGLADETPNRLKYHIFFYGTRETGICRQDELFPYTEFK 66 (439)
Q Consensus 6 ~~fk~GDLVWAKvkGYP~WPArV~~~pevk~~~~ky~V~FFGt~e~Awv~~k~L~Py~e~k 66 (439)
..+++|+++.|+...--|.-|+|.... ..+.+.|+|..-+.+..|+.++|.+.....
T Consensus 410 ~~~~~G~~c~a~~~d~~wyRa~I~~v~----~~~~~~V~fvDyGn~e~v~~~~Lr~l~~~f 466 (570)
T 3bdl_A 410 YAPRRGEFCIAKFVDGEWYRARVEKVE----SPAKIHVFYIDYGNREVLPSTRLGTLSPAF 466 (570)
T ss_dssp CCCCTTCEEEEECTTSCEEEEEEEEEE----ETTEEEEEETTTCCEEEECGGGEECCCGGG
T ss_pred cCCCcCCEEEEEECCCCEEEEEEEEEc----CCCeEEEEEEeCCCeEEEEHHHCccCCHHH
Confidence 357899999999964568899999874 247899999999999999999999988543
No 64
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=29.43 E-value=37 Score=31.30 Aligned_cols=55 Identities=13% Similarity=0.043 Sum_probs=44.5
Q ss_pred CCccCcEEEEeccCC-CCCCceecCCCCCCCCCceEEEEEecCCceeeecCCCcccchhh
Q psy6849 7 KFKTNDKVFAKVRGY-PPWPARIEGLADETPNRLKYHIFFYGTRETGICRQDELFPYTEF 65 (439)
Q Consensus 7 ~fk~GDLVWAKvkGY-P~WPArV~~~pevk~~~~ky~V~FFGt~e~Awv~~k~L~Py~e~ 65 (439)
..++|+++-|+...- -|.=|+|.... ..+.+.|+|..-+.+..|+.++|.+....
T Consensus 65 ~~~~G~~c~a~~~~d~~WyRa~V~~~~----~~~~~~V~~vDyGn~~~v~~~~l~~l~~~ 120 (226)
T 4b9x_A 65 KAEIGRPCCAFFSGDGNWYRALVKEIL----PSGNVKVHFVDYGNVEEVTTDQLQAILPQ 120 (226)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEEC----SSSEEEEECTTTCCEEEEEGGGEECCCGG
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEEC----CCCeEEEEEEecCCEEEEEHHHhccChHH
Confidence 467899999998643 46678888753 34689999999999999999999988753
No 65
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer, hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Probab=25.58 E-value=25 Score=36.60 Aligned_cols=51 Identities=18% Similarity=0.309 Sum_probs=24.5
Q ss_pred CCCCChHHhhhCchHHHHHHHhhhhccCccccccCHHHHHHhhhhHHHHHHHHHHHHHHhhhhcccCCC-cchHHHHHHH
Q psy6849 332 NLPITPLVLKKHPEIVDTCRRLQRYTGNIAEWTMTEEEAEVFTQKASQVRAKADHVYNKFKNLFTVPAG-ETFWDTFSKQ 410 (439)
Q Consensus 332 ~L~vt~~mL~k~~e~V~tirklrry~gn~~~w~~~~~~~~~f~~~a~~Ir~kA~~ly~kfK~~F~~~eg-~~Fw~~F~~~ 410 (439)
-|.|+.-|||.|. .|++||++.. ..|...|+.|+.-++. ..||..|..-
T Consensus 105 PLNVSRE~LQ~~~----~lk~Irk~i~--------------------------kKvl~~L~~la~d~e~Y~~f~~~fg~~ 154 (448)
T 3q6m_A 105 PLNISREMLQQSK----ILKVIRKNLV--------------------------KKCLELFTELAEDKENYKKFYEQFSKN 154 (448)
T ss_dssp C---------CCS----HHHHHHHHHH--------------------------HHHHHHHHHHTSSHHHHHHHHHHHHHH
T ss_pred CccccHHhhccCH----HHHHHHHHHH--------------------------HHHHHHHHHHHhCHHHHHHHHHHHhHH
Confidence 4778899999998 4566777754 2344455666622233 5688888665
Q ss_pred HH
Q psy6849 411 LV 412 (439)
Q Consensus 411 v~ 412 (439)
++
T Consensus 155 lK 156 (448)
T 3q6m_A 155 IK 156 (448)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 66
>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}
Probab=24.61 E-value=36 Score=28.52 Aligned_cols=28 Identities=25% Similarity=0.290 Sum_probs=22.6
Q ss_pred CccccCCCccCcEEEEeccCCCCCCceec
Q psy6849 1 MPAVERKFKTNDKVFAKVRGYPPWPARIE 29 (439)
Q Consensus 1 m~~~~~~fk~GDLVWAKvkGYP~WPArV~ 29 (439)
|..-....++||||...-.+|.+| |+-+
T Consensus 1 m~~~~~ep~pGDlI~~~r~~Y~H~-gIYv 28 (125)
T 2lkt_A 1 MASPHQEPKPGDLIEIFRLGYEHW-ALYI 28 (125)
T ss_dssp CCSSSCCCCTTCEEEEECSSSCEE-EEEE
T ss_pred CCCCCCCCCCCCEEEEeCCCccEE-EEEe
Confidence 555667899999999999999999 4433
No 67
>3pry_A Heat shock protein HSP 90-beta; structural genomics, structural genomics consortium, SGC, HE protein, chaperone; 2.28A {Homo sapiens} SCOP: d.14.1.8
Probab=24.03 E-value=23 Score=34.45 Aligned_cols=23 Identities=13% Similarity=0.177 Sum_probs=17.4
Q ss_pred CCCCChHHhhhCchHHHHHHHhhhhcc
Q psy6849 332 NLPITPLVLKKHPEIVDTCRRLQRYTG 358 (439)
Q Consensus 332 ~L~vt~~mL~k~~e~V~tirklrry~g 358 (439)
-|.||.-|||.|. .|++||++.+
T Consensus 105 PLNVSRE~LQ~~~----~lk~I~k~i~ 127 (268)
T 3pry_A 105 PLNISREMLQQSK----ILKVIRKNIV 127 (268)
T ss_dssp CSSCSSCCHHHHH----HHHHHHHHHH
T ss_pred CccccHHHhccCH----HHHHHHHHHH
Confidence 4788999999887 3566777754
Done!