RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6849
(439 letters)
>2b4j_C PC4 and SFRS1 interacting protein; HIV, integration, transcription,
viral protein, recombinatio; 2.02A {Homo sapiens} SCOP:
a.48.4.1 PDB: 3f9k_C 3hpg_G 3u88_C* 3hph_E
Length = 98
Score = 96.6 bits (240), Expect = 1e-24
Identities = 27/113 (23%), Positives = 57/113 (50%), Gaps = 18/113 (15%)
Query: 298 LEVCILDIDLRIKDSIGLEHADCDECLKALDDLINLPITPLVLKKHPEIVDTCRRLQRYT 357
++ + I IK+S+ +++ D + C++ALD+L +L +T +KH E++ T ++++R+
Sbjct: 4 MDSRLQRIHAEIKNSLKIDNLDVNRCIEALDELASLQVTMQQAQKHTEMITTLKKIRRFK 63
Query: 358 GNIAEWTMTEEEAEVFTQKASQVRAKADHVYNKFKNLFTVPAGETFWDTFSKQ 410
+ + K+ +YNKFKN+F V G++ +
Sbjct: 64 VS------------------QVIMEKSTMLYNKFKNMFLVGEGDSVITQVLNK 98
>1z9e_A PC4 and SFRS1 interacting protein 2; heat repeat-like, ledgf,
protein binding/transcription complex; NMR {Homo
sapiens} SCOP: a.48.4.1
Length = 127
Score = 91.4 bits (226), Expect = 2e-22
Identities = 27/124 (21%), Positives = 58/124 (46%), Gaps = 18/124 (14%)
Query: 298 LEVCILDIDLRIKDSIGLEHADCDECLKALDDLINLPITPLVLKKHPEIVDTCRRLQRYT 357
++ + I IK+S+ +++ D + C++ALD+L +L +T +KH E++ T ++++R+
Sbjct: 4 MDSRLQRIHAEIKNSLKIDNLDVNRCIEALDELASLQVTMQQAQKHTEMITTLKKIRRFK 63
Query: 358 GNIAEWTMTEEEAEVFTQKASQVRAKADHVYNKFKNLFTVPAGETFWDTFSKQLVTFNDV 417
+ + K+ +YNKFKN+F V G++ + +
Sbjct: 64 VS------------------QVIMEKSTMLYNKFKNMFLVGEGDSVITQVLNKSLAEQRQ 105
Query: 418 TRNM 421
Sbjct: 106 HEEA 109
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2,
structural genomics consortium, SGC, protein binding;
HET: M3L; 1.95A {Homo sapiens} PDB: 3qj6_A* 3eae_A
1n27_A
Length = 94
Score = 88.5 bits (219), Expect = 8e-22
Identities = 45/83 (54%), Positives = 53/83 (63%), Gaps = 2/83 (2%)
Query: 6 RKFKTNDKVFAKVRGYPPWPARIEGLADET--PNRLKYHIFFYGTRETGICRQDELFPYT 63
FK D VFAK++GYP WPARI+ +AD P KY IFF+GT ET +LFPY
Sbjct: 4 HAFKPGDLVFAKMKGYPHWPARIDDIADGAVKPPPNKYPIFFFGTHETAFLGPKDLFPYD 63
Query: 64 EFKDKYGKGVKRKFFTEALQEIE 86
+ KDKYGK KRK F E L EI+
Sbjct: 64 KCKDKYGKPNKRKGFNEGLWEIQ 86
>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain,
heparin-binding, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A
Length = 110
Score = 87.9 bits (217), Expect = 3e-21
Identities = 40/84 (47%), Positives = 55/84 (65%), Gaps = 2/84 (2%)
Query: 5 ERKFKTNDKVFAKVRGYPPWPARIEGLADETPNRL--KYHIFFYGTRETGICRQDELFPY 62
++++K D VFAK++GYP WPARI+ + + KY +FF+GT ET +LFPY
Sbjct: 17 QKEYKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHETAFLGPKDLFPY 76
Query: 63 TEFKDKYGKGVKRKFFTEALQEIE 86
E K+K+GK KRK F+E L EIE
Sbjct: 77 EESKEKFGKPNKRKGFSEGLWEIE 100
>2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2
Length = 110
Score = 78.8 bits (194), Expect = 4e-18
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 9/90 (10%)
Query: 6 RKFKTNDKVFAKVRGYPPWPARI-------EGLADETPNRLKYHIFFYGTRETGICRQDE 58
K V+ K+ Y WPA I + + + +FF+G+ + Q
Sbjct: 7 GKLHYKQIVWVKLGNYRWWPAEICNPRSVPLNIQGLKHDLGDFPVFFFGSHDYYWVHQGR 66
Query: 59 LFPYTEFKDKY--GKGVKRKFFTEALQEIE 86
+FPY E + G+ K F +AL+E
Sbjct: 67 VFPYVEGDKSFAEGQTSINKTFKKALEEAA 96
>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase,
methylysine binding, STR genomics consortium, SGC,
alternative promoter usage; HET: DNA BTB; 2.30A {Homo
sapiens}
Length = 154
Score = 72.2 bits (176), Expect = 2e-15
Identities = 24/137 (17%), Positives = 47/137 (34%), Gaps = 7/137 (5%)
Query: 6 RKFKTNDKVFAKVRGYPPWPARIEGLAD---ETPNRLKYHIFFYGTRETGICRQDELFPY 62
R F + V+ K+RG+ WP RI + ++G + + ++L P
Sbjct: 15 RGFGIGELVWGKLRGFSWWPGRIVSWWMTGRSRAAEGTRWVMWFGDGKFSVVCVEKLMPL 74
Query: 63 TEFKDKYGKGV--KRKFFTEALQEIECDFGTPESRANLLPSESTPKPEATESQAGSDNEG 120
+ F + + K+ + +A+ E+ L P T N+
Sbjct: 75 SSFCSAFHQATYNKQPMYRKAIYEVLQVAS--SRAGKLFPVCHDSDESDTAKAVEVQNKP 132
Query: 121 NLVIDEGSEKKAAPKPK 137
+ G + + PK
Sbjct: 133 MIEWALGGFQPSGPKGL 149
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel
followed by five-helix bundle; HET: DNA; 1.80A {Mus
musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A*
Length = 147
Score = 66.4 bits (161), Expect = 2e-13
Identities = 21/140 (15%), Positives = 42/140 (30%), Gaps = 8/140 (5%)
Query: 6 RKFKTNDKVFAKVRGYPPWPARIEGLAD---ETPNRLKYHIFFYGTRETGICRQDELFPY 62
++F D V+ K++G+ WPA + + ++G + D+L
Sbjct: 10 KEFGIGDLVWGKIKGFSWWPAMVVSWKATSKRQAMPGMRWVQWFGDGKFSEISADKLVAL 69
Query: 63 TEFKDKY--GKGVKRKFFTEALQEIECDFGTPESRANLLPSESTPKPEATESQAGSDNEG 120
F + K + +A+ RA S S + + + +
Sbjct: 70 GLFSQHFNLATFNKLVSYRKAMYHTLEK---ARVRAGKTFSSSPGESLEDQLKPMLEWAH 126
Query: 121 NLVIDEGSEKKAAPKPKTST 140
G E K +
Sbjct: 127 GGFKPTGIEGLKPNKKQPEN 146
>2l89_A PWWP domain-containing protein 1; histone binding, protein
binding; NMR {Schizosaccharomyces pombe}
Length = 108
Score = 65.0 bits (158), Expect = 2e-13
Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 10/92 (10%)
Query: 3 AVERKFKTNDKVFAKVRGYPPWPARI-------EGLADETPNRLKYHIFFYGTRETGICR 55
+ + + D++ K GYP WPA + + L + + Y + F+ +
Sbjct: 1 SADDRLNFGDRILVKAPGYPWWPALLLRRKETKDSLNTNSSFNVLYKVLFFPDFNFAWVK 60
Query: 56 QDELFPYTEFK-DKYGKGVKRK--FFTEALQE 84
++ + P + + K+ KRK EA +
Sbjct: 61 RNSVKPLLDSEIAKFLGSSKRKSKELIEAYEA 92
>1h3z_A Hypothetical 62.8 kDa protein C215.07C; nuclear protein, PWWP,
chromatin, beta-barrel; NMR {Schizosaccharomyces pombe}
SCOP: b.34.9.2
Length = 109
Score = 62.3 bits (151), Expect = 2e-12
Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 12/92 (13%)
Query: 5 ERKFKTNDKVFAKVRGYPPWPARIEGLADETPNRLK---------YHIFFYGTRETGICR 55
+K +V K+ G+P WP+ + + T K Y + F+ +E
Sbjct: 4 RVNYKPGMRVLTKMSGFPWWPSMVVTESKMTSVARKSKPKRAGTFYPVIFFPNKEYLWTG 63
Query: 56 QDELFPYTE--FKDKYGKG-VKRKFFTEALQE 84
D L P T K K +A +
Sbjct: 64 SDSLTPLTSEAISQFLEKPKPKTASLIKAYKM 95
>2gfu_A DNA mismatch repair protein MSH6; PWWP domain, tudor domain, DNA
binding, DNA binding protein; HET: DNA; NMR {Homo
sapiens}
Length = 134
Score = 56.7 bits (136), Expect = 4e-10
Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 9/92 (9%)
Query: 2 PAVERKFKTNDKVFAKVRGYPPWPARIEGLADETP------NRLKYHI-FFYGTRETGIC 54
F D V+AK+ GYP WP+ + + ++ H+ FF + G
Sbjct: 17 APTSSDFSPGDLVWAKMEGYPWWPSLVYNHPFDGTFIREKGKSVRVHVQFFDDSPTRGWV 76
Query: 55 RQDELFPYTEFKDKYGKGVKRKFFTEALQEIE 86
+ L PYT K K + K F A EI
Sbjct: 77 SKRLLKPYTGSKSK--EAQKGGHFYSAKPEIL 106
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.9 bits (131), Expect = 4e-08
Identities = 69/475 (14%), Positives = 134/475 (28%), Gaps = 141/475 (29%)
Query: 42 HIFFYGTRETGICRQDELFPYTEFKDKYGKGVKRKFFTEALQEIECDFG---TPESRANL 98
HI +G R LF K + V++ F E L+ ++ +P
Sbjct: 53 HIIMSKDAVSGTLR---LF--WTLLSKQEEMVQK-FVEEVLRI---NYKFLMSPIKTEQR 103
Query: 99 LPSESTPKPEATESQAGSDNEGNLVIDEGSEKKAAPKPKTSTPRVSEAMDVDTPNYHHKP 158
PS T + +DN+ K + R+ + + +P
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQ--------------VFAKYNVSRLQPYLKLRQALLELRP 149
Query: 159 SP-------------VL--------KVT----------TSGRKIKPKKTFDP-------- 179
+ + KV P+ +
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 180 DDNDSTFSSHSGGFKEQSPIPGTENALIKASVCRIKTVDGK---LVLLD------INKFT 230
D N ++ S HS S I +++ +K+ + LVLL+ N F
Sbjct: 210 DPNWTSRSDHS------SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263
Query: 231 PPENCKT-----EKSINLWKMNKINEFKQIREKVEEGEPV--KEE----YAKIIEEQCQ- 278
+CK K + + ++ ++ +E K ++ + Q
Sbjct: 264 L--SCKILLTTRFKQV----TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 279 -PEVQAELEANEKALKTQLKLEVCILDIDLRIKDSIG----LEHADCDECLKALDDLINL 333
P E T + I I I+D + +H +CD+ ++ +N+
Sbjct: 318 LPR-----EV-----LTTNPRRLSI--IAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 334 PITPLVLKKH-------PEIVD-TCRRLQRYTGNIAEWT-MTEEEAEVFTQ---KASQVR 381
+ P +K P L W + + + V K S V
Sbjct: 366 -LEPAEYRKMFDRLSVFPPSAHIPTILLSLI------WFDVIKSDVMVVVNKLHKYSLVE 418
Query: 382 AKAD----HVYNKFKNLFTVPAGETFWDTFSKQLVTFNDVTRNMPAHDLFSLCED 432
+ + + + L E + +V ++ + + DL D
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEY---ALHRSIVDHYNIPKTFDSDDLIPPYLD 470
Score = 43.3 bits (101), Expect = 1e-04
Identities = 49/314 (15%), Positives = 92/314 (29%), Gaps = 86/314 (27%)
Query: 147 MDVDTPNYHHKPSPVLKVTTSGRKIKPKKTFD----PDDNDSTFSSHSGGFKEQSPIPGT 202
MD +T + ++ +L V FD D S S +E I +
Sbjct: 7 MDFETGEHQYQYKDILSVFED----AFVDNFDCKDVQDMPKSILSK-----EEIDHIIMS 57
Query: 203 ENALIKASVCRIKTVDGKLVLLDINKFTPPENCK--TEKSINL---WKMNKINE------ 251
++A V G L L E + E+ + + + M+ I
Sbjct: 58 KDA-----------VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS 106
Query: 252 -----FKQIREKVEEGEPV--------KEEYAKIIE--EQCQPEVQAELEANEKALKTQL 296
+ + R+++ V + Y K+ + + +P ++ + KT +
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV 166
Query: 297 KLEVCILDIDLRIKDSIG---LEHADCDECLKALDDLINLPITPLVLKKHPEIVDTCRRL 353
L+VC L ++ K L +C+ + + + L+ + P
Sbjct: 167 ALDVC-LSYKVQCKMDFKIFWLNLKNCNS-----PETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 354 QRYTGNIAEWTMTEEEAEVFTQKASQVRAKA----DHVYNKFKNLFTVPAGETFWDTF-- 407
I E + K +V N W+ F
Sbjct: 221 SNIKLRIHSI--QAELRRLLKSK---PYENCLLVLLNVQNA-----------KAWNAFNL 264
Query: 408 -SKQLVTFNDVTRN 420
K L+T TR
Sbjct: 265 SCKILLT----TRF 274
Score = 42.1 bits (98), Expect = 3e-04
Identities = 69/512 (13%), Positives = 136/512 (26%), Gaps = 175/512 (34%)
Query: 4 VERKFKTNDKVFAK---VRGYPPWPARIEGLADETPNRLKYHIFFYGTRETG-------I 53
+R + N VFAK R P R + L + P + ++ G +G +
Sbjct: 116 RDRLYNDNQ-VFAKYNVSRLQPYLKLR-QALLELRPAK---NVLIDGVLGSGKTWVALDV 170
Query: 54 CRQDEL---FPYTEFKDKYGKGVKRKFFTEALQEIECDFGTPESRANLLPSESTPKPEAT 110
C ++ + F + E LQ++ P + S + +
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL-LYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 111 ESQAGSD-------NEGNLVIDEGSEKKAAPKPKTSTPRVSEAMDVDTPNYHHKPSPVLK 163
LV+ + A ++ +L
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLN-----------VQNAKAWNAFNLS--------CKIL- 269
Query: 164 VTTSGRKI---------------KPKKTFDPDDNDSTFSSHSGGFKEQSPIPGTEN---- 204
+TT +++ T PD+ S + + P
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329
Query: 205 -ALIKASV----CRI---KTVDG----KLVLLDINKFTP-------------PENCK-TE 238
++I S+ K V+ ++ +N P P +
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389
Query: 239 KSIN-LWK-------MNKINEF-------KQIREK--------VEEGEPVKEEYA---KI 272
++ +W M +N+ KQ +E +E ++ EYA I
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449
Query: 273 IE----------EQCQPEV-----------------QAE--------------LEANEKA 291
++ + P E LE +
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH 509
Query: 292 LKTQLKLEVCILD--IDLRI-KDSIGLEHADCDECLKALDDLINLPITPLVLKKHPEIVD 348
T IL+ L+ K I + + A+ D + L+ K+ +++
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL- 568
Query: 349 TCRRLQRYTGNIAEWTMTEEEAEVFTQKASQV 380
+ IA + E+ +F + QV
Sbjct: 569 -----R-----IA---LMAEDEAIFEEAHKQV 587
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 35.9 bits (82), Expect = 0.013
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 254 QIREKVEEGEPVK---EEYAKIIEEQCQPEVQAELEANEKALK 293
Q +E E ++ EE K ++E E E EKA K
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKK 118
Score = 35.5 bits (81), Expect = 0.016
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 18/82 (21%)
Query: 232 PENCKTEK-SINLWKMNKINEF-KQIREK-----------VEEGEPVKEEYAKIIEEQCQ 278
+ E SI W+ E K+++E E+ + EE+ + EQ +
Sbjct: 77 ADRLTQEPESIRKWRE----EQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVE 132
Query: 279 PEVQAELEANEKALKTQLKLEV 300
+ + +KA Q ++
Sbjct: 133 -KNKINNRIADKAFYQQPDADI 153
>3l42_A Peregrin; transcription regulation, histone H3 acetylation,
chromatin modification, structural genomics, structural
genomics CONS SGC, activator; 1.30A {Homo sapiens} PDB:
3mo8_A* 2x4w_A* 2x35_A* 2x4x_A* 2x4y_A*
Length = 130
Score = 34.0 bits (77), Expect = 0.029
Identities = 21/115 (18%), Positives = 30/115 (26%), Gaps = 35/115 (30%)
Query: 5 ERKFKTNDKVFAKVRGYPPWPARIEGLADETPNRLKYHI--------------------- 43
+ D V+AK RGYP +PA I + +
Sbjct: 3 DSPLDALDLVWAKCRGYPSYPALIIDPKMPREGMFHHGVPIPVPPLEVLKLGEQMTQEAR 62
Query: 44 -------FFYGTRETGICRQDELFPYTEFKD-------KYGKGVKRKFFTEALQE 84
FF R + +L P +D + K RK A
Sbjct: 63 EHLYLVLFFDNKRTWQWLPRTKLVPLGVNQDLDKEKMLEGRKSNIRKSVQIAYHR 117
>3pfs_A Bromodomain and PHD finger-containing protein 3; structural
genomics, structural genomics consortium, SGC, PW
domain, protein binding; 1.90A {Homo sapiens} PDB:
3lyi_A*
Length = 158
Score = 34.5 bits (78), Expect = 0.030
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 2 PAVERKFKTNDKVFAKVRGYPPWPARI 28
+ + V+AK RGYP +PA I
Sbjct: 31 FEDRGDLEPLELVWAKCRGYPSYPALI 57
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.23
Identities = 65/410 (15%), Positives = 121/410 (29%), Gaps = 145/410 (35%)
Query: 78 FTEALQEIECDFGTPES---RANLLPSE-STPKPEATESQAGSDNEGNLVIDEGSEKKAA 133
T + +E P + A+ L + + PE TE A D+E
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAA-DDE-------------- 53
Query: 134 PKPKTSTPRVSE-----AMDVDTPNYHHKPSPVLKVTTSGRKIKPKKTFD---------- 178
P T V + + V+ P+ + VL + F+
Sbjct: 54 --PTTPAELVGKFLGYVSSLVE-PSKVGQFDQVLNLCL--------TEFENCYLEGNDIH 102
Query: 179 ------PDDNDSTFSSHSGGFK--------EQSPIP-GTENALIKASVCRIKTVDGKLVL 223
+ND+T K + P + +AL +A + +LV
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV----GEGNAQLVA 158
Query: 224 LDINKFT---PPENCKTEKSINLWKMNKINEFKQIREKVEEGEPVKEEYAKIIEEQCQPE 280
+ F ++ F+++R+ + + + K E
Sbjct: 159 I----FGGQGNTDDY----------------FEELRDLYQTYHVLVGDLIKFSAETLSEL 198
Query: 281 VQAELEANEKALKTQLKLEVCILDID--LRIKDSIGLEHADCDECLKALDDLINLPIT-P 337
++ L+A K+ L+I L + D+ D L+++PI+ P
Sbjct: 199 IRTTLDAE--------KVFTQGLNILEWLENPSNTP------DK-----DYLLSIPISCP 239
Query: 338 LV-LKKHPEIVDTCRRLQRYTGNIAEWT--MTEEEAEVFTQKASQVRAKADHVYNKFKNL 394
L+ + + V T + L G + + T + V A
Sbjct: 240 LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL-------VTA------------ 280
Query: 395 FTVPAGETFWDTFSKQLVTFNDVTRNMPAHDLFSL---CED--PTTTAPS 439
A W++F + V LF + C + P T+ P
Sbjct: 281 -VAIAETDSWESFFVSVRKAITV--------LFFIGVRCYEAYPNTSLPP 321
Score = 32.3 bits (73), Expect = 0.35
Identities = 45/291 (15%), Positives = 72/291 (24%), Gaps = 138/291 (47%)
Query: 14 VFAKVRGYPP--WPARIEGL---------------ADE-------TPNRLKYHIFFYGTR 49
V AK+ G+ P + ++G D + +FF G R
Sbjct: 251 VTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV-LFFIGVR 309
Query: 50 ETGICRQDELFPYTEFKDKYGKGVKRKFFTEALQE-IECDFGTPESRANLLPSESTP--- 105
C + +P T L++ +E + G P +P
Sbjct: 310 ----CYE--AYPNTSLPP------------SILEDSLENNEGVP-----------SPMLS 340
Query: 106 ----KPEATESQAGSDNEG----------------NLVIDEGS-----------EKKAAP 134
E + N NLV+ G K AP
Sbjct: 341 ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV-SGPPQSLYGLNLTLRKAKAP 399
Query: 135 -------------KPKTST---PRVSEAMDVDTPNYHHKPSPVLKVTTSGRKIKPKKTFD 178
K K S P V +P +H S +L + I D
Sbjct: 400 SGLDQSRIPFSERKLKFSNRFLP-------VASP-FH---SHLLVPASD--LINK----D 442
Query: 179 PDDNDSTFSSHSGGFKEQSPIPGTEN--------ALIKASVCR---IKTVD 218
N+ +F++ P+ T + I + V
Sbjct: 443 LVKNNVSFNAKDIQI----PVYDTFDGSDLRVLSGSISERIVDCIIRLPVK 489
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 27.3 bits (61), Expect = 5.8
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 256 REKVEEGEPVKEEYAKIIEEQCQPEVQAELEANEKALKTQLKL 298
K E+ + Y K + E P+V + + EK LK Q +L
Sbjct: 89 YFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQERL 131
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.132 0.389
Gapped
Lambda K H
0.267 0.0513 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,732,851
Number of extensions: 410394
Number of successful extensions: 858
Number of sequences better than 10.0: 1
Number of HSP's gapped: 841
Number of HSP's successfully gapped: 31
Length of query: 439
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 343
Effective length of database: 4,021,377
Effective search space: 1379332311
Effective search space used: 1379332311
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.0 bits)