RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6849
(439 letters)
>d2b4jc1 a.48.4.1 (C:346-426) PC4 and SFRS1-interacting protein,
PSIP1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 81
Score = 86.7 bits (215), Expect = 1e-21
Identities = 24/93 (25%), Positives = 49/93 (52%), Gaps = 18/93 (19%)
Query: 302 ILDIDLRIKDSIGLEHADCDECLKALDDLINLPITPLVLKKHPEIVDTCRRLQRYTGNIA 361
+ I IK+S+ +++ D + C++ALD+L +L +T +KH E++ T ++++R+ +
Sbjct: 7 LQRIHAEIKNSLKIDNLDVNRCIEALDELASLQVTMQQAQKHTEMITTLKKIRRFKVS-- 64
Query: 362 EWTMTEEEAEVFTQKASQVRAKADHVYNKFKNL 394
+ K+ +YNKFKN+
Sbjct: 65 ----------------QVIMEKSTMLYNKFKNM 81
>d2nlua1 b.34.9.2 (A:1-100) Hepatoma-derived growth factor, HDGF
{Human (Homo sapiens) [TaxId: 9606]}
Length = 100
Score = 85.0 bits (210), Expect = 6e-21
Identities = 43/94 (45%), Positives = 57/94 (60%), Gaps = 5/94 (5%)
Query: 6 RKFKTNDKVFAKVRGYPPWPARI--EGLADETPNRLKYHIFFYGTRETGICRQDELFPYT 63
+++K D VFAK++GYP WPARI A KY +FF+GT ET +LFPY
Sbjct: 8 KEYKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHETAFLGPKDLFPYE 67
Query: 64 EFKDKYGKGVKRKFFTEALQEIECDFGTPESRAN 97
E K+K+GK KRK F+E L EIE + P +A+
Sbjct: 68 ESKEKFGKPNKRKGFSEGLWEIENN---PTVKAS 98
>d1khca_ b.34.9.2 (A:) DNA methyltransferase DNMT3B {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 137
Score = 71.2 bits (174), Expect = 1e-15
Identities = 16/98 (16%), Positives = 31/98 (31%), Gaps = 9/98 (9%)
Query: 6 RKFKTNDKVFAKVRGYPPWPARIEGLAD---ETPNRLKYHIFFYGTRETGICRQDELFPY 62
++F D V+ K++G+ WPA + + ++G + D+L
Sbjct: 7 KEFGIGDLVWGKIKGFSWWPAMVVSWKATSKRQAMPGMRWVQWFGDGKFSEISADKLVAL 66
Query: 63 TEFKDKYGKGVKRKF------FTEALQEIECDFGTPES 94
F + K L++ G S
Sbjct: 67 GLFSQHFNLATFNKLVSYRKAMYHTLEKARVRAGKTFS 104
>d2daqa1 b.34.9.2 (A:8-104) Histone-lysine N-methyltransferase
NSD3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 97
Score = 68.1 bits (166), Expect = 7e-15
Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 9/89 (10%)
Query: 7 KFKTNDKVFAKVRGYPPWPARI-------EGLADETPNRLKYHIFFYGTRETGICRQDEL 59
K V+ K+ Y WPA I + + + +FF+G+ + Q +
Sbjct: 1 KLHYKQIVWVKLGNYRWWPAEICNPRSVPLNIQGLKHDLGDFPVFFFGSHDYYWVHQGRV 60
Query: 60 FPYTEFKDK--YGKGVKRKFFTEALQEIE 86
FPY E G+ K F +AL+E
Sbjct: 61 FPYVEGDKSFAEGQTSINKTFKKALEEAA 89
>d1h3za_ b.34.9.2 (A:) Hypothetical protein SPBC215.07c {Fission
yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 108
Score = 57.8 bits (139), Expect = 4e-11
Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 12/90 (13%)
Query: 7 KFKTNDKVFAKVRGYPPWPARIEGLADETPNRLK---------YHIFFYGTRETGICRQD 57
+K +V K+ G+P WP+ + + T K Y + F+ +E D
Sbjct: 5 NYKPGMRVLTKMSGFPWWPSMVVTESKMTSVARKSKPKRAGTFYPVIFFPNKEYLWTGSD 64
Query: 58 ELFPYTE--FKDKYGKGV-KRKFFTEALQE 84
L P T K K +A +
Sbjct: 65 SLTPLTSEAISQFLEKPKPKTASLIKAYKM 94
>d2ffja1 e.50.1.1 (A:7-288) Hypothetical protein AF1104
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 282
Score = 28.7 bits (64), Expect = 1.4
Identities = 15/99 (15%), Positives = 39/99 (39%), Gaps = 2/99 (2%)
Query: 252 FKQIREKVEEGEPVKEEYAKIIEE--QCQPEVQAELEANEKALKTQLKLEVCILDIDLRI 309
+++ E + +P E A+ E Q P + +E ++ KT + + + + D +
Sbjct: 52 HRRVYEILGVEDPYAEVKARANEVARQVLPLAKEIVEGSDDPFKTAVIVSIVGNNFDYGV 111
Query: 310 KDSIGLEHADCDECLKALDDLINLPITPLVLKKHPEIVD 348
+ +E D + + + + + T + + V
Sbjct: 112 QGHKVVEEEFRDFLKRKVQEGLKINDTERIKELSSGKVV 150
>d1ntha_ c.1.25.1 (A:) Monomethylamine methyltransferase MtmB
{Archaeon Methanosarcina barkeri [TaxId: 2208]}
Length = 457
Score = 28.8 bits (64), Expect = 1.6
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 356 YTGNIAEWTMTEEEAEVFTQKASQVRAKADHVYNKF-KNLFTVPAGETFWDTF 407
T + M E + S+V D + + + KN + PAG+TF + +
Sbjct: 376 KTTGMEARMMGEVARATAGVEISEVNVILDKLVSLYEKNYASAPAGKTFQECY 428
>d1914a1 d.49.1.1 (A:4004-4081) Signal recognition particle 9KDa
protein, SRP9 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 78
Score = 25.8 bits (57), Expect = 2.7
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 7/36 (19%)
Query: 218 DGKLVLLDINKFTPPENC---KTEKSINLWKMNKIN 250
DG L + K T C +T+++ ++ K+ K +
Sbjct: 32 DGNLCI----KVTDDLVCLVYRTDQAQDVKKIEKFH 63
>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase
{Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 192
Score = 27.2 bits (59), Expect = 3.4
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 7/58 (12%)
Query: 104 TPKPEATESQAGSDNEGNLVIDEGSEKKAAPKPKTSTPRVSEAMDVDTPNYHHKPSPV 161
P + + D++G +V G+ +TS P V A DV Y +
Sbjct: 125 EPATKFLDGGVELDSDGYVVTKPGT-------TQTSVPGVFAAGDVQDKKYRQAITAA 175
>d1qzua_ c.34.1.1 (A:) 4'-phosphopantothenoylcysteine decarboxylase
(PPC decarboxylase, halotolerance protein Hal3a) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 181
Score = 26.9 bits (59), Expect = 3.6
Identities = 14/96 (14%), Positives = 29/96 (30%), Gaps = 4/96 (4%)
Query: 342 KHPEIVDTCRRLQRYTGNIAEWTMTEEEAEVFTQKASQVRAKADHVYNKFKNLFTVPAGE 401
K P +V +L G TE ++ + V +D + + P
Sbjct: 19 KLPLLV---SKLLDIPGLEVAVVTTERAKHFYSPQDIPVTLYSDADEWEMWKSRSDPVLH 75
Query: 402 TFWDTFSKQLVTFNDVTRNMPAHDLFSLCEDPTTTA 437
++ L+ + N +C++ T
Sbjct: 76 IDLRRWADLLLVAP-LDANTLGKVASGICDNLLTCV 110
>d2h6ma1 b.47.1.4 (A:1-212) 3C cysteine protease (picornain 3C)
{Human hepatitis A virus [TaxId: 208726]}
Length = 212
Score = 26.9 bits (59), Expect = 4.1
Identities = 6/43 (13%), Positives = 12/43 (27%)
Query: 214 IKTVDGKLVLLDINKFTPPENCKTEKSINLWKMNKINEFKQIR 256
G + + + L K+ I +F+ I
Sbjct: 58 YFNRGGTYYSISAGNVVIQSLDVGFQDVVLMKVPTIPKFRDIT 100
>d1ogya2 c.81.1.1 (A:12-681) Periplasmic nitrate reductase alpha
chain {Rhodobacter sphaeroides [TaxId: 1063]}
Length = 670
Score = 27.3 bits (59), Expect = 4.2
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 10/54 (18%)
Query: 56 QDELFPYTEFKDKYGKGVKRKFFTEALQEIECDFGTPESRANLLPSESTPKPEA 109
++ + Y E D Y K + F +G P+ RA +L P E+
Sbjct: 627 EETRWRYREGFDPYVKPGEGLRF----------YGKPDGRAVILGVPYEPPAES 670
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.132 0.389
Gapped
Lambda K H
0.267 0.0575 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,657,356
Number of extensions: 80631
Number of successful extensions: 211
Number of sequences better than 10.0: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 17
Length of query: 439
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 351
Effective length of database: 1,199,356
Effective search space: 420973956
Effective search space used: 420973956
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (24.9 bits)