Query psy6850
Match_columns 118
No_of_seqs 148 out of 1332
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 19:59:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6850.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6850hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0328|consensus 100.0 9E-31 1.9E-35 188.1 8.1 101 1-107 297-397 (400)
2 KOG0330|consensus 100.0 8.4E-29 1.8E-33 183.6 8.6 100 1-106 331-430 (476)
3 KOG0332|consensus 100.0 6.8E-28 1.5E-32 178.1 10.1 114 1-114 361-475 (477)
4 KOG0331|consensus 99.9 7.3E-28 1.6E-32 185.2 7.9 100 1-106 372-471 (519)
5 KOG0340|consensus 99.9 1.2E-27 2.5E-32 176.0 8.1 100 1-106 285-384 (442)
6 COG0513 SrmB Superfamily II DN 99.9 1.9E-27 4.2E-32 185.0 9.6 94 1-100 304-398 (513)
7 PRK04837 ATP-dependent RNA hel 99.9 5.4E-27 1.2E-31 178.5 9.6 101 1-107 286-386 (423)
8 KOG0333|consensus 99.9 1.3E-26 2.8E-31 177.0 7.5 90 1-96 548-637 (673)
9 PRK11776 ATP-dependent RNA hel 99.9 7.1E-26 1.5E-30 174.0 10.5 100 1-106 273-372 (460)
10 PRK10590 ATP-dependent RNA hel 99.9 9.1E-26 2E-30 173.5 9.9 100 1-106 276-375 (456)
11 PLN00206 DEAD-box ATP-dependen 99.9 7.3E-26 1.6E-30 176.4 8.6 97 1-103 399-495 (518)
12 PRK11634 ATP-dependent RNA hel 99.9 1.6E-25 3.4E-30 177.7 10.5 104 1-110 276-379 (629)
13 PTZ00424 helicase 45; Provisio 99.9 1.8E-25 3.8E-30 168.5 9.7 101 1-107 298-398 (401)
14 PTZ00110 helicase; Provisional 99.9 1.3E-25 2.8E-30 175.9 8.3 97 1-103 408-504 (545)
15 PRK11192 ATP-dependent RNA hel 99.9 4.7E-25 1E-29 168.2 10.0 95 1-101 276-370 (434)
16 KOG0326|consensus 99.9 1.5E-25 3.3E-30 163.5 6.7 99 1-105 353-451 (459)
17 KOG0336|consensus 99.9 1.2E-25 2.6E-30 168.3 5.8 108 1-114 496-603 (629)
18 PRK01297 ATP-dependent RNA hel 99.9 1.1E-24 2.3E-29 168.2 10.6 94 1-100 366-459 (475)
19 PRK04537 ATP-dependent RNA hel 99.9 6.4E-25 1.4E-29 172.8 9.6 96 1-102 288-383 (572)
20 KOG0342|consensus 99.9 1.2E-24 2.6E-29 164.9 7.7 96 1-105 361-456 (543)
21 KOG0338|consensus 99.9 3.1E-24 6.8E-29 163.8 7.6 88 1-94 457-544 (691)
22 TIGR00614 recQ_fam ATP-depende 99.9 1.1E-23 2.4E-28 162.5 9.3 88 1-94 257-344 (470)
23 KOG0345|consensus 99.9 7.8E-24 1.7E-28 160.1 7.3 103 1-109 288-390 (567)
24 KOG0335|consensus 99.9 1E-23 2.2E-28 160.7 7.6 96 1-102 368-463 (482)
25 KOG0341|consensus 99.9 6.8E-24 1.5E-28 158.2 5.9 89 1-95 452-541 (610)
26 PLN03137 ATP-dependent DNA hel 99.9 1.8E-23 3.8E-28 171.9 8.8 87 1-93 711-797 (1195)
27 TIGR03817 DECH_helic helicase/ 99.9 2.5E-23 5.3E-28 167.7 9.4 97 1-103 310-408 (742)
28 KOG0348|consensus 99.9 2.6E-23 5.7E-28 159.4 7.5 98 1-105 478-575 (708)
29 KOG0327|consensus 99.9 4.2E-23 9E-28 152.8 7.7 102 1-108 294-395 (397)
30 KOG0344|consensus 99.9 3.7E-23 8.1E-28 159.3 7.4 89 1-95 419-507 (593)
31 PRK11057 ATP-dependent DNA hel 99.9 7E-23 1.5E-27 162.2 9.1 86 1-92 267-352 (607)
32 TIGR01389 recQ ATP-dependent D 99.9 5.5E-22 1.2E-26 156.7 8.7 87 1-93 255-341 (591)
33 KOG0347|consensus 99.9 3.5E-22 7.5E-27 153.7 6.9 91 1-97 494-584 (731)
34 KOG0350|consensus 99.9 1E-21 2.2E-26 149.7 8.3 90 2-97 465-554 (620)
35 COG0514 RecQ Superfamily II DN 99.9 2.2E-21 4.7E-26 151.7 9.6 89 1-95 261-349 (590)
36 PF00271 Helicase_C: Helicase 99.8 1.8E-21 4E-26 116.3 6.0 65 1-71 14-78 (78)
37 KOG0343|consensus 99.8 6.7E-21 1.4E-25 146.8 7.4 98 1-105 346-444 (758)
38 TIGR00643 recG ATP-dependent D 99.8 9.8E-20 2.1E-24 144.9 10.1 76 1-81 489-564 (630)
39 PRK10917 ATP-dependent DNA hel 99.8 1.1E-19 2.5E-24 145.6 10.3 76 1-81 512-587 (681)
40 KOG0339|consensus 99.8 4.4E-20 9.5E-25 141.4 6.3 102 1-108 499-600 (731)
41 TIGR00580 mfd transcription-re 99.8 1.6E-19 3.4E-24 148.2 9.4 89 1-94 693-787 (926)
42 PRK13767 ATP-dependent helicas 99.8 3.9E-19 8.4E-24 145.7 10.0 97 1-104 321-421 (876)
43 KOG0334|consensus 99.8 1.8E-19 3.9E-24 145.9 7.1 89 1-95 644-732 (997)
44 COG1111 MPH1 ERCC4-like helica 99.8 7.2E-19 1.6E-23 134.3 9.2 75 2-83 407-481 (542)
45 PRK04914 ATP-dependent helicas 99.8 7.6E-19 1.6E-23 144.2 8.9 91 1-97 525-617 (956)
46 PRK09751 putative ATP-dependen 99.8 1.1E-18 2.4E-23 147.5 9.7 100 1-106 308-410 (1490)
47 PRK10689 transcription-repair 99.8 1E-18 2.3E-23 145.8 8.2 77 1-82 842-918 (1147)
48 PRK05298 excinuclease ABC subu 99.8 2.5E-18 5.3E-23 137.4 8.6 102 1-109 477-592 (652)
49 PRK02362 ski2-like helicase; P 99.7 6E-18 1.3E-22 136.7 9.1 77 1-83 310-397 (737)
50 TIGR01970 DEAH_box_HrpB ATP-de 99.7 2.3E-18 5E-23 140.0 5.9 83 1-84 243-337 (819)
51 KOG0346|consensus 99.7 3.9E-18 8.4E-23 128.8 6.6 90 1-96 299-423 (569)
52 smart00490 HELICc helicase sup 99.7 6.7E-18 1.4E-22 100.4 6.3 65 1-71 18-82 (82)
53 KOG4284|consensus 99.7 6.3E-18 1.4E-22 132.5 7.5 84 2-91 304-388 (980)
54 TIGR00631 uvrb excinuclease AB 99.7 1.6E-17 3.5E-22 132.5 9.5 79 1-86 473-556 (655)
55 KOG0349|consensus 99.7 1.6E-17 3.5E-22 125.8 8.4 100 1-106 539-670 (725)
56 PHA02653 RNA helicase NPH-II; 99.7 1.8E-17 3.8E-22 132.5 8.7 89 1-92 428-523 (675)
57 KOG0351|consensus 99.7 2.1E-17 4.5E-22 135.3 8.3 88 1-94 516-603 (941)
58 PRK11664 ATP-dependent RNA hel 99.7 8.4E-18 1.8E-22 136.8 4.9 83 1-84 246-340 (812)
59 cd00079 HELICc Helicase superf 99.7 3.5E-17 7.5E-22 105.2 6.8 73 1-79 59-131 (131)
60 PRK00254 ski2-like helicase; P 99.7 8.8E-17 1.9E-21 129.7 8.2 79 1-84 302-389 (720)
61 KOG0354|consensus 99.7 1.4E-16 3.1E-21 126.8 8.8 75 3-85 457-531 (746)
62 PRK09200 preprotein translocas 99.7 8E-17 1.7E-21 130.1 6.9 77 1-85 459-543 (790)
63 PRK13766 Hef nuclease; Provisi 99.7 2.5E-16 5.4E-21 127.7 9.6 76 1-83 404-479 (773)
64 PRK12898 secA preprotein trans 99.7 1.9E-16 4.1E-21 125.8 8.0 77 1-85 504-588 (656)
65 KOG0337|consensus 99.7 6.5E-17 1.4E-21 121.7 4.7 97 2-104 293-389 (529)
66 KOG0352|consensus 99.7 7.9E-17 1.7E-21 121.8 4.8 87 1-93 286-372 (641)
67 PRK01172 ski2-like helicase; P 99.7 3.6E-16 7.9E-21 125.3 8.4 82 1-83 292-378 (674)
68 TIGR01587 cas3_core CRISPR-ass 99.6 4.9E-16 1.1E-20 115.9 7.1 73 1-82 255-335 (358)
69 TIGR00603 rad25 DNA repair hel 99.6 1.2E-15 2.6E-20 122.4 9.5 81 1-86 522-610 (732)
70 COG1200 RecG RecG-like helicas 99.6 2.5E-15 5.5E-20 118.5 8.1 100 1-105 514-618 (677)
71 TIGR03714 secA2 accessory Sec 99.6 1.4E-15 3.1E-20 122.3 6.8 77 1-86 455-540 (762)
72 PRK11131 ATP-dependent RNA hel 99.6 8.3E-16 1.8E-20 128.8 5.5 79 1-85 320-413 (1294)
73 PHA02558 uvsW UvsW helicase; P 99.6 2.8E-15 6E-20 116.8 7.4 75 1-81 375-453 (501)
74 TIGR00963 secA preprotein tran 99.6 6.4E-15 1.4E-19 118.2 7.3 78 1-86 436-520 (745)
75 TIGR00595 priA primosomal prot 99.5 7E-15 1.5E-19 114.7 6.1 81 1-81 291-379 (505)
76 TIGR01967 DEAH_box_HrpA ATP-de 99.5 5.8E-15 1.3E-19 123.9 4.9 82 1-85 313-406 (1283)
77 TIGR02621 cas3_GSU0051 CRISPR- 99.5 9.9E-15 2.1E-19 118.5 6.0 71 1-80 301-388 (844)
78 KOG0329|consensus 99.5 2.9E-15 6.3E-20 107.3 2.1 76 24-105 302-378 (387)
79 COG1201 Lhr Lhr-like helicases 99.5 4.7E-14 1E-18 114.2 8.7 97 1-103 285-384 (814)
80 PRK05580 primosome assembly pr 99.5 3E-14 6.4E-19 114.5 7.4 84 1-84 459-550 (679)
81 PRK12906 secA preprotein trans 99.5 2.7E-14 5.8E-19 115.4 6.1 77 1-85 471-555 (796)
82 PRK12900 secA preprotein trans 99.4 1.8E-13 3.9E-18 112.1 4.9 76 5-86 631-714 (1025)
83 COG1197 Mfd Transcription-repa 99.4 1.6E-12 3.5E-17 107.5 8.2 77 1-82 836-912 (1139)
84 KOG0353|consensus 99.4 2.6E-13 5.7E-18 102.0 3.2 93 1-99 348-483 (695)
85 KOG0953|consensus 99.4 1.5E-12 3.3E-17 101.1 7.0 112 1-114 388-508 (700)
86 COG1204 Superfamily II helicas 99.4 1.9E-12 4.1E-17 105.1 7.7 80 1-81 321-406 (766)
87 TIGR03158 cas3_cyano CRISPR-as 99.3 3.6E-12 7.9E-17 95.7 4.6 53 1-68 305-357 (357)
88 TIGR01054 rgy reverse gyrase. 99.2 3.3E-11 7.1E-16 101.6 7.7 46 1-50 360-410 (1171)
89 COG1061 SSL2 DNA or RNA helica 99.2 6.8E-11 1.5E-15 91.2 7.6 63 2-70 314-376 (442)
90 PRK14701 reverse gyrase; Provi 99.2 1.4E-11 3.1E-16 106.1 4.1 78 8-88 366-461 (1638)
91 PLN03142 Probable chromatin-re 99.1 1.3E-10 2.7E-15 96.8 7.1 77 1-83 518-599 (1033)
92 COG1202 Superfamily II helicas 99.1 4E-11 8.7E-16 93.9 3.7 78 1-83 471-553 (830)
93 KOG0950|consensus 99.1 1.5E-10 3.3E-15 94.3 7.1 90 1-92 529-620 (1008)
94 KOG4150|consensus 99.1 1.5E-10 3.3E-15 90.8 6.6 99 2-106 565-665 (1034)
95 PRK09401 reverse gyrase; Revie 99.1 6.9E-11 1.5E-15 99.7 4.0 64 1-69 362-430 (1176)
96 COG1205 Distinct helicase fami 99.1 1.9E-10 4E-15 94.6 5.7 91 1-96 345-437 (851)
97 PRK09694 helicase Cas3; Provis 99.1 2.4E-10 5.1E-15 94.1 5.7 63 1-72 594-664 (878)
98 COG1198 PriA Primosomal protei 99.1 3.5E-10 7.5E-15 91.3 6.5 79 8-86 522-606 (730)
99 COG0556 UvrB Helicase subunit 99.0 9.1E-10 2E-14 85.7 7.2 74 1-81 477-555 (663)
100 COG4098 comFA Superfamily II D 99.0 1.7E-09 3.8E-14 80.4 7.2 76 7-87 342-420 (441)
101 PRK11448 hsdR type I restricti 98.9 2.6E-09 5.7E-14 90.0 6.8 58 8-71 743-801 (1123)
102 KOG0947|consensus 98.9 3.4E-09 7.4E-14 86.8 7.2 82 1-83 637-723 (1248)
103 KOG0923|consensus 98.9 1.3E-09 2.7E-14 86.6 4.4 80 1-81 513-604 (902)
104 KOG0952|consensus 98.9 5.5E-09 1.2E-13 86.2 7.9 85 1-86 403-494 (1230)
105 KOG0922|consensus 98.9 1.2E-09 2.5E-14 86.5 3.2 84 1-85 297-392 (674)
106 KOG0951|consensus 98.9 4.5E-09 9.7E-14 88.0 6.2 90 1-90 614-709 (1674)
107 COG1643 HrpA HrpA-like helicas 98.9 1.8E-09 4E-14 88.3 3.6 82 1-83 294-387 (845)
108 KOG0948|consensus 98.8 7.5E-09 1.6E-13 83.3 5.1 82 1-83 453-539 (1041)
109 PRK12904 preprotein translocas 98.8 1.5E-08 3.2E-13 82.9 6.8 74 6-85 464-575 (830)
110 KOG0949|consensus 98.7 2.5E-08 5.4E-13 82.1 6.2 74 1-80 969-1045(1330)
111 PRK13107 preprotein translocas 98.7 5.1E-08 1.1E-12 80.1 8.0 77 1-85 480-593 (908)
112 PRK13104 secA preprotein trans 98.7 3.6E-08 7.7E-13 81.0 6.2 77 1-85 475-589 (896)
113 KOG0924|consensus 98.6 3.2E-08 6.9E-13 79.2 4.1 74 2-82 605-696 (1042)
114 COG4581 Superfamily II RNA hel 98.6 8E-08 1.7E-12 79.9 6.3 82 1-83 451-537 (1041)
115 KOG0390|consensus 98.6 1.1E-07 2.3E-12 77.2 6.8 75 1-81 626-705 (776)
116 KOG0920|consensus 98.6 3.5E-08 7.6E-13 81.2 3.7 82 1-83 451-544 (924)
117 KOG0926|consensus 98.6 3.1E-08 6.8E-13 80.3 3.2 78 3-81 613-702 (1172)
118 COG1203 CRISPR-associated heli 98.4 3.8E-07 8.2E-12 74.4 5.5 73 1-82 471-549 (733)
119 KOG0385|consensus 98.0 1.1E-05 2.3E-10 65.6 6.1 78 2-85 519-601 (971)
120 KOG0392|consensus 97.9 2.3E-05 5E-10 66.4 6.2 76 2-83 1375-1454(1549)
121 KOG0387|consensus 97.9 2.1E-05 4.5E-10 64.1 5.4 77 2-84 579-659 (923)
122 KOG1123|consensus 97.8 7.2E-05 1.6E-09 58.8 6.9 82 2-88 570-658 (776)
123 KOG0384|consensus 97.7 9E-05 1.9E-09 62.8 6.5 76 2-83 731-811 (1373)
124 COG0553 HepA Superfamily II DN 97.7 6.8E-05 1.5E-09 61.4 5.8 78 1-84 742-823 (866)
125 PF13871 Helicase_C_4: Helicas 97.7 0.00024 5.2E-09 52.0 7.1 78 11-94 52-141 (278)
126 PRK12903 secA preprotein trans 97.6 7.3E-05 1.6E-09 61.9 4.5 63 17-85 470-541 (925)
127 TIGR01407 dinG_rel DnaQ family 97.6 0.00015 3.3E-09 60.3 5.8 72 7-79 712-811 (850)
128 PRK14873 primosome assembly pr 97.6 0.00017 3.8E-09 58.5 5.9 69 9-83 461-539 (665)
129 PRK12899 secA preprotein trans 97.5 0.00014 3.1E-09 60.6 4.3 62 18-85 613-683 (970)
130 COG4889 Predicted helicase [Ge 97.5 0.00014 3E-09 60.5 4.0 74 2-81 507-586 (1518)
131 PF13307 Helicase_C_2: Helicas 97.4 0.00074 1.6E-08 45.7 6.2 44 6-49 45-92 (167)
132 TIGR00348 hsdR type I site-spe 97.3 0.00098 2.1E-08 54.2 7.6 66 9-81 579-649 (667)
133 KOG0925|consensus 97.3 0.00015 3.3E-09 56.8 2.8 62 20-82 313-386 (699)
134 PRK12901 secA preprotein trans 97.3 0.0003 6.4E-09 59.3 4.4 62 18-85 673-743 (1112)
135 PRK12326 preprotein translocas 97.3 0.00038 8.3E-09 56.8 4.7 62 18-85 472-549 (764)
136 smart00492 HELICc3 helicase su 97.2 0.0028 6E-08 42.0 7.4 44 6-49 33-79 (141)
137 KOG0391|consensus 97.1 0.0016 3.4E-08 55.8 6.7 78 2-83 1308-1387(1958)
138 PRK08074 bifunctional ATP-depe 97.0 0.0017 3.7E-08 54.7 6.0 88 6-94 790-906 (928)
139 smart00491 HELICc2 helicase su 97.0 0.0036 7.7E-08 41.5 6.4 42 8-49 32-80 (142)
140 PRK13103 secA preprotein trans 97.0 0.0014 3E-08 54.8 4.9 62 18-85 494-593 (913)
141 KOG0388|consensus 96.8 0.0024 5.3E-08 52.3 5.3 76 2-83 1076-1154(1185)
142 COG1199 DinG Rad3-related DNA 96.8 0.0072 1.6E-07 48.9 8.1 96 6-102 513-638 (654)
143 KOG0389|consensus 96.7 0.0061 1.3E-07 50.3 6.8 78 2-85 809-890 (941)
144 KOG1000|consensus 96.6 0.0063 1.4E-07 48.1 5.9 69 2-76 524-594 (689)
145 KOG1015|consensus 96.6 0.0039 8.5E-08 52.6 5.0 72 2-79 1196-1271(1567)
146 PRK07246 bifunctional ATP-depe 96.6 0.016 3.5E-07 48.4 8.6 86 9-95 683-797 (820)
147 PRK11747 dinG ATP-dependent DN 96.4 0.012 2.6E-07 48.3 6.8 73 8-81 569-673 (697)
148 KOG1002|consensus 96.3 0.016 3.4E-07 46.1 6.4 78 2-85 670-751 (791)
149 COG4096 HsdR Type I site-speci 96.1 0.0058 1.3E-07 50.5 3.5 57 8-70 467-525 (875)
150 KOG4439|consensus 96.1 0.013 2.8E-07 48.0 5.2 72 1-78 777-851 (901)
151 TIGR00596 rad1 DNA repair prot 96.0 0.026 5.7E-07 47.1 6.8 50 25-83 431-514 (814)
152 KOG1513|consensus 95.8 0.016 3.5E-07 48.2 4.5 61 14-80 851-920 (1300)
153 TIGR02562 cas3_yersinia CRISPR 95.7 0.021 4.5E-07 48.7 5.1 45 19-72 837-881 (1110)
154 PF06862 DUF1253: Protein of u 95.6 0.094 2E-06 41.0 8.0 82 4-91 334-423 (442)
155 KOG0701|consensus 95.5 0.0029 6.2E-08 55.6 -0.5 56 9-70 343-398 (1606)
156 CHL00122 secA preprotein trans 95.5 0.022 4.8E-07 47.6 4.5 25 61-85 609-633 (870)
157 COG1110 Reverse gyrase [DNA re 95.4 0.014 3E-07 49.5 3.1 41 9-49 372-417 (1187)
158 KOG0951|consensus 94.8 0.14 3.1E-06 44.7 7.4 87 1-91 1412-1502(1674)
159 KOG0386|consensus 94.8 0.11 2.3E-06 44.3 6.3 74 2-81 758-834 (1157)
160 PF10593 Z1: Z1 domain; Inter 94.7 0.063 1.4E-06 38.6 4.4 60 21-86 136-196 (239)
161 TIGR00604 rad3 DNA repair heli 94.5 0.23 5E-06 40.9 7.7 72 7-79 565-671 (705)
162 TIGR03117 cas_csf4 CRISPR-asso 94.2 0.34 7.5E-06 39.6 8.0 73 9-82 507-616 (636)
163 COG1110 Reverse gyrase [DNA re 93.8 0.058 1.3E-06 45.9 3.1 31 1-31 162-192 (1187)
164 KOG0921|consensus 93.8 0.025 5.4E-07 47.6 0.9 80 1-81 681-772 (1282)
165 KOG1016|consensus 93.6 0.15 3.2E-06 42.8 4.8 72 2-79 769-843 (1387)
166 PRK14873 primosome assembly pr 92.7 0.32 7E-06 39.9 5.6 45 1-46 221-265 (665)
167 PRK10917 ATP-dependent DNA hel 92.0 0.26 5.6E-06 40.5 4.3 44 1-44 345-389 (681)
168 COG1198 PriA Primosomal protei 91.5 0.39 8.5E-06 39.9 4.9 44 1-45 277-320 (730)
169 PRK05580 primosome assembly pr 91.1 0.43 9.3E-06 39.3 4.7 45 1-46 222-266 (679)
170 TIGR00595 priA primosomal prot 90.7 0.4 8.6E-06 38.1 4.1 45 1-46 57-101 (505)
171 TIGR00643 recG ATP-dependent D 89.4 0.57 1.2E-05 38.1 4.1 44 1-44 319-363 (630)
172 PRK09401 reverse gyrase; Revie 88.0 0.43 9.4E-06 41.6 2.7 39 56-96 518-560 (1176)
173 COG0653 SecA Preprotein transl 87.4 0.3 6.6E-06 40.9 1.4 59 19-83 475-545 (822)
174 TIGR00580 mfd transcription-re 85.7 1.1 2.4E-05 38.3 3.8 44 1-44 535-579 (926)
175 PRK10689 transcription-repair 81.6 2 4.4E-05 37.6 3.8 44 1-44 684-728 (1147)
176 COG1200 RecG RecG-like helicas 81.0 2.7 5.9E-05 34.6 4.1 43 2-44 347-390 (677)
177 TIGR01054 rgy reverse gyrase. 79.4 2.4 5.3E-05 37.2 3.6 29 1-29 159-187 (1171)
178 COG1197 Mfd Transcription-repa 78.3 3.4 7.4E-05 36.0 4.1 40 5-44 682-722 (1139)
179 KOG2340|consensus 77.7 9.6 0.00021 31.0 6.1 75 10-90 592-675 (698)
180 COG0610 Type I site-specific r 74.7 15 0.00032 31.8 7.0 66 9-81 580-651 (962)
181 PRK12902 secA preprotein trans 73.6 1.6 3.4E-05 37.3 0.9 25 61-85 666-690 (939)
182 PRK14701 reverse gyrase; Provi 73.4 4.7 0.0001 36.7 3.8 29 1-29 159-187 (1638)
183 KOG1001|consensus 71.9 0.24 5.3E-06 40.7 -4.0 69 2-76 571-641 (674)
184 PRK15483 type III restriction- 70.2 19 0.00041 31.3 6.5 71 20-96 501-581 (986)
185 COG1111 MPH1 ERCC4-like helica 69.1 29 0.00063 28.0 6.9 92 2-102 94-193 (542)
186 PF10657 RC-P840_PscD: Photosy 65.1 13 0.00027 24.2 3.5 37 10-46 64-106 (144)
187 COG0513 SrmB Superfamily II DN 63.3 9.6 0.00021 30.4 3.4 40 1-44 135-180 (513)
188 cd01294 DHOase Dihydroorotase 59.2 13 0.00029 27.6 3.4 28 5-32 219-246 (335)
189 COG3587 Restriction endonuclea 57.6 28 0.00061 29.9 5.2 71 20-96 483-566 (985)
190 PF01589 Alpha_E1_glycop: Alph 52.6 10 0.00023 29.9 1.9 12 41-52 247-258 (502)
191 KOG0701|consensus 51.5 5.3 0.00011 36.2 0.2 56 7-68 708-763 (1606)
192 COG0478 RIO-like serine/threon 50.9 12 0.00027 27.9 2.0 20 20-39 230-249 (304)
193 KOG0298|consensus 44.5 13 0.00028 33.1 1.5 55 11-73 1259-1314(1394)
194 PF14824 Sirohm_synth_M: Siroh 44.4 16 0.00034 17.7 1.1 12 17-28 1-12 (30)
195 TIGR01389 recQ ATP-dependent D 43.5 35 0.00076 27.6 3.7 28 1-28 84-111 (591)
196 PF09010 AsiA: Anti-Sigma Fact 43.0 10 0.00022 23.2 0.5 19 2-20 60-78 (91)
197 PTZ00300 pyruvate kinase; Prov 42.9 22 0.00048 28.1 2.4 54 31-94 130-184 (454)
198 PRK05451 dihydroorotase; Provi 42.2 36 0.00078 25.6 3.4 27 5-31 225-251 (345)
199 PRK05826 pyruvate kinase; Prov 39.2 23 0.0005 28.1 2.0 51 64-114 179-232 (465)
200 PF02603 Hpr_kinase_N: HPr Ser 39.1 23 0.00051 22.7 1.7 26 3-28 64-89 (127)
201 PF02399 Herpes_ori_bp: Origin 38.9 37 0.00081 29.0 3.2 60 19-81 325-386 (824)
202 TIGR00856 pyrC_dimer dihydroor 38.6 46 0.00099 25.1 3.5 28 5-32 222-249 (341)
203 TIGR00614 recQ_fam ATP-depende 35.8 52 0.0011 25.8 3.5 29 1-29 82-110 (470)
204 KOG0327|consensus 32.8 63 0.0014 25.1 3.4 66 13-85 115-180 (397)
205 COG0514 RecQ Superfamily II DN 32.4 59 0.0013 26.8 3.3 28 1-28 88-115 (590)
206 PF07208 DUF1414: Protein of u 32.1 52 0.0011 17.4 2.0 16 3-18 23-38 (44)
207 PF07835 COX4_pro_2: Bacterial 31.6 52 0.0011 17.2 2.0 17 2-18 7-23 (44)
208 KOG1067|consensus 31.4 49 0.0011 27.3 2.7 35 15-49 386-429 (760)
209 PRK05428 HPr kinase/phosphoryl 30.8 93 0.002 23.4 3.9 32 3-38 65-96 (308)
210 COG1185 Pnp Polyribonucleotide 27.4 72 0.0016 26.7 3.0 38 14-51 339-384 (692)
211 TIGR00679 hpr-ser Hpr(Ser) kin 27.3 1.1E+02 0.0025 22.9 3.9 31 3-37 65-95 (304)
212 COG1212 KdsB CMP-2-keto-3-deox 26.8 80 0.0017 23.0 2.9 31 7-37 198-232 (247)
213 cd00268 DEADc DEAD-box helicas 25.8 1.1E+02 0.0023 20.5 3.3 27 19-45 118-150 (203)
214 PTZ00365 60S ribosomal protein 25.4 1.8E+02 0.0039 21.5 4.5 78 11-101 139-225 (266)
215 PRK12902 secA preprotein trans 25.0 41 0.00089 29.1 1.3 19 18-36 486-505 (939)
216 COG5435 Uncharacterized conser 25.0 79 0.0017 21.2 2.4 43 14-64 15-57 (147)
217 PF04312 DUF460: Protein of un 24.4 84 0.0018 20.8 2.4 23 8-30 64-86 (138)
218 PF00390 malic: Malic enzyme, 23.2 47 0.001 23.0 1.2 19 10-28 56-74 (182)
219 PRK07369 dihydroorotase; Provi 23.2 1.1E+02 0.0023 23.8 3.2 27 5-32 285-311 (418)
220 PF05872 DUF853: Bacterial pro 22.5 55 0.0012 26.3 1.5 59 35-99 251-315 (502)
221 KOG0202|consensus 22.3 4.9E+02 0.011 22.9 6.9 83 4-97 520-623 (972)
222 COG1794 RacX Aspartate racemas 22.0 1.6E+02 0.0036 21.2 3.7 29 75-103 77-105 (230)
223 PRK09570 rpoH DNA-directed RNA 21.8 1.2E+02 0.0025 18.1 2.5 37 1-37 15-53 (79)
224 PLN02599 dihydroorotase 21.8 1.3E+02 0.0029 23.0 3.5 29 5-33 244-272 (364)
225 PF11637 UvsW: ATP-dependant D 21.4 36 0.00078 18.7 0.2 29 85-113 7-35 (54)
226 PF00270 DEAD: DEAD/DEAH box h 21.3 2.1E+02 0.0045 18.2 4.0 27 18-44 93-125 (169)
227 TIGR02744 TrbI_Ftype type-F co 21.1 1.4E+02 0.0031 19.0 2.9 35 3-37 54-100 (112)
228 PRK11057 ATP-dependent DNA hel 21.1 1.5E+02 0.0032 24.3 3.7 28 1-28 96-123 (607)
229 KOG1133|consensus 20.6 2.8E+02 0.0061 23.7 5.2 71 10-81 673-778 (821)
No 1
>KOG0328|consensus
Probab=99.97 E-value=9e-31 Score=188.13 Aligned_cols=101 Identities=45% Similarity=0.770 Sum_probs=98.6
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|++++|.+++++||+|+.+||++||+.+||+|+|.|.+|||||+|. +.+.|+||+||+||+|+.|+++.|+
T Consensus 297 HGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~------nre~YIHRIGRSGRFGRkGvainFV 370 (400)
T KOG0328|consen 297 HGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPN------NRELYIHRIGRSGRFGRKGVAINFV 370 (400)
T ss_pred cCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCc------cHHHHhhhhccccccCCcceEEEEe
Confidence 9999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhCCCceecCCCCh
Q psy6850 81 DEHSVGVLKDIEKHFGKKIELLDTEDI 107 (118)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (118)
..++...++.++++++..+.++|++..
T Consensus 371 k~~d~~~lrdieq~yst~i~emp~nva 397 (400)
T KOG0328|consen 371 KSDDLRILRDIEQYYSTQIDEMPMNVA 397 (400)
T ss_pred cHHHHHHHHHHHHHHhhhcccccchhh
Confidence 999999999999999999999998743
No 2
>KOG0330|consensus
Probab=99.96 E-value=8.4e-29 Score=183.55 Aligned_cols=100 Identities=34% Similarity=0.666 Sum_probs=97.0
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|+++.|.-++++|++|..+||||||+++||+|+|.|++|||||+|. ...+|+||+||+||+|++|.+|+|+
T Consensus 331 hGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~------~skDYIHRvGRtaRaGrsG~~ItlV 404 (476)
T KOG0330|consen 331 HGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPT------HSKDYIHRVGRTARAGRSGKAITLV 404 (476)
T ss_pred cchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCC------cHHHHHHHcccccccCCCcceEEEE
Confidence 9999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhCCCceecCCCC
Q psy6850 81 DEHSVGVLKDIEKHFGKKIELLDTED 106 (118)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (118)
+..|.+.+.+||..++++..+.+.+.
T Consensus 405 tqyDve~~qrIE~~~gkkl~~~~~~~ 430 (476)
T KOG0330|consen 405 TQYDVELVQRIEHALGKKLPEYKVDK 430 (476)
T ss_pred ehhhhHHHHHHHHHHhcCCCccCcch
Confidence 99999999999999999998877655
No 3
>KOG0332|consensus
Probab=99.95 E-value=6.8e-28 Score=178.14 Aligned_cols=114 Identities=52% Similarity=0.856 Sum_probs=107.6
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|.-++|.+++++||.|+.+|||+|++++||+|++.|++|||||+|....++-+++.|+||+||+||+|+.|.++.|+
T Consensus 361 ~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v 440 (477)
T KOG0332|consen 361 HGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLV 440 (477)
T ss_pred eccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEee
Confidence 89999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred cC-CcHHHHHHHHHHhCCCceecCCCChhhhhhcc
Q psy6850 81 DE-HSVGVLKDIEKHFGKKIELLDTEDIDDEGNFR 114 (118)
Q Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (118)
.. .....+..|+++.+..+..+.++..++++++.
T Consensus 441 ~~~~s~~~mn~iq~~F~~~i~~~~~~d~~E~eki~ 475 (477)
T KOG0332|consen 441 DDKDSMNIMNKIQKHFNMKIKRLDPDDLDELEKIV 475 (477)
T ss_pred cccCcHHHHHHHHHHHhhcceecCCccHHHHHHHh
Confidence 84 46678889999999999999998888888764
No 4
>KOG0331|consensus
Probab=99.95 E-value=7.3e-28 Score=185.19 Aligned_cols=100 Identities=35% Similarity=0.579 Sum_probs=93.3
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+++|.||..+++.|++|+..||||||+++||||+|+|++|||||+|. +.++|+||+||+||+++.|.+++|.
T Consensus 372 HGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~------~vEdYVHRiGRTGRa~~~G~A~tff 445 (519)
T KOG0331|consen 372 HGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPN------NVEDYVHRIGRTGRAGKKGTAITFF 445 (519)
T ss_pred cccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCC------CHHHHHhhcCccccCCCCceEEEEE
Confidence 9999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhCCCceecCCCC
Q psy6850 81 DEHSVGVLKDIEKHFGKKIELLDTED 106 (118)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (118)
+..+......+.+.+...-+.++...
T Consensus 446 t~~~~~~a~~l~~~l~e~~q~v~~~l 471 (519)
T KOG0331|consen 446 TSDNAKLARELIKVLREAGQTVPPDL 471 (519)
T ss_pred eHHHHHHHHHHHHHHHHccCCCChHH
Confidence 99998888888888766666665443
No 5
>KOG0340|consensus
Probab=99.95 E-value=1.2e-27 Score=175.95 Aligned_cols=100 Identities=36% Similarity=0.665 Sum_probs=97.3
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||.|+|.+|...+.+|+++..+||||||+++||+|+|.|++|||||+|. +|..|+||+||+.|+|+.|.+++++
T Consensus 285 Hs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr------~P~~yiHRvGRtARAGR~G~aiSiv 358 (442)
T KOG0340|consen 285 HSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPR------DPKDYIHRVGRTARAGRKGMAISIV 358 (442)
T ss_pred hhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCC------CHHHHHHhhcchhcccCCcceEEEe
Confidence 9999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhCCCceecCCCC
Q psy6850 81 DEHSVGVLKDIEKHFGKKIELLDTED 106 (118)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (118)
+..|...+..+|+..|+++.+.+...
T Consensus 359 t~rDv~l~~aiE~~igkKl~e~~~~~ 384 (442)
T KOG0340|consen 359 TQRDVELLQAIEEEIGKKLTEYNKVQ 384 (442)
T ss_pred chhhHHHHHHHHHHHhcccccccccc
Confidence 99999999999999999999988644
No 6
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.9e-27 Score=185.05 Aligned_cols=94 Identities=45% Similarity=0.766 Sum_probs=90.1
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|+|++|.+++++|++|+.+||||||+++||||+|+|.+|||||+|. +++.|+||+||+||+|..|.+++|+
T Consensus 304 hG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~------~~e~yvHRiGRTgRaG~~G~ai~fv 377 (513)
T COG0513 304 HGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPL------DPEDYVHRIGRTGRAGRKGVAISFV 377 (513)
T ss_pred cCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCC------CHHHheeccCccccCCCCCeEEEEe
Confidence 9999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCC-cHHHHHHHHHHhCCCce
Q psy6850 81 DEH-SVGVLKDIEKHFGKKIE 100 (118)
Q Consensus 81 ~~~-~~~~~~~~~~~~~~~~~ 100 (118)
.+. +...+..+++..+..++
T Consensus 378 ~~~~e~~~l~~ie~~~~~~~~ 398 (513)
T COG0513 378 TEEEEVKKLKRIEKRLERKLP 398 (513)
T ss_pred CcHHHHHHHHHHHHHHhcccc
Confidence 976 88999999999876655
No 7
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=5.4e-27 Score=178.55 Aligned_cols=101 Identities=38% Similarity=0.576 Sum_probs=95.0
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|++++|.+++++|++|+++|||||+++++|+|+|+|++||+||+|. +...|+||+||+||.|+.|.+++|+
T Consensus 286 hg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~------s~~~yiqR~GR~gR~G~~G~ai~~~ 359 (423)
T PRK04837 286 TGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPD------DCEDYVHRIGRTGRAGASGHSISLA 359 (423)
T ss_pred cCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCC------chhheEeccccccCCCCCeeEEEEe
Confidence 8999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhCCCceecCCCCh
Q psy6850 81 DEHSVGVLKDIEKHFGKKIELLDTEDI 107 (118)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (118)
.+.+...+..+++.++..++..+.+..
T Consensus 360 ~~~~~~~~~~i~~~~~~~~~~~~~~~~ 386 (423)
T PRK04837 360 CEEYALNLPAIETYIGHSIPVSKYDSD 386 (423)
T ss_pred CHHHHHHHHHHHHHhCCCCCCccCChh
Confidence 999999999999999888876655443
No 8
>KOG0333|consensus
Probab=99.93 E-value=1.3e-26 Score=177.02 Aligned_cols=90 Identities=37% Similarity=0.650 Sum_probs=85.7
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+.+++||+.+++.|+.|..+||||||+++||||+|+|.+|||||++. +...|.||+||+||+|+.|.+++|+
T Consensus 548 Hg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmak------sieDYtHRIGRTgRAGk~GtaiSfl 621 (673)
T KOG0333|consen 548 HGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAK------SIEDYTHRIGRTGRAGKSGTAISFL 621 (673)
T ss_pred eCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhh------hHHHHHHHhccccccccCceeEEEe
Confidence 9999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhC
Q psy6850 81 DEHSVGVLKDIEKHFG 96 (118)
Q Consensus 81 ~~~~~~~~~~~~~~~~ 96 (118)
++.+...+..|...+.
T Consensus 622 t~~dt~v~ydLkq~l~ 637 (673)
T KOG0333|consen 622 TPADTAVFYDLKQALR 637 (673)
T ss_pred ccchhHHHHHHHHHHH
Confidence 9999887777766653
No 9
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.93 E-value=7.1e-26 Score=174.00 Aligned_cols=100 Identities=33% Similarity=0.520 Sum_probs=95.0
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|++.+|..++++|++|+++|||||+++++|+|+|++++||+||+|. ++..|+||+||+||.|..|.+++|+
T Consensus 273 hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~------~~~~yiqR~GRtGR~g~~G~ai~l~ 346 (460)
T PRK11776 273 HGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELAR------DPEVHVHRIGRTGRAGSKGLALSLV 346 (460)
T ss_pred eCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCC------CHhHhhhhcccccCCCCcceEEEEE
Confidence 8999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhCCCceecCCCC
Q psy6850 81 DEHSVGVLKDIEKHFGKKIELLDTED 106 (118)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (118)
.+.+...++.+++.++..+...+.+.
T Consensus 347 ~~~e~~~~~~i~~~~~~~~~~~~l~~ 372 (460)
T PRK11776 347 APEEMQRANAIEDYLGRKLNWEPLPS 372 (460)
T ss_pred chhHHHHHHHHHHHhCCCCceecCCc
Confidence 99999999999999988887766553
No 10
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.93 E-value=9.1e-26 Score=173.47 Aligned_cols=100 Identities=36% Similarity=0.592 Sum_probs=94.4
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|++++|.+++++|++|+++|||||+++++|+|+|+|++||+||+|. ++.+|+||+||+||.|..|.+++|+
T Consensus 276 hg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~------~~~~yvqR~GRaGR~g~~G~ai~l~ 349 (456)
T PRK10590 276 HGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPN------VPEDYVHRIGRTGRAAATGEALSLV 349 (456)
T ss_pred ECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCC------CHHHhhhhccccccCCCCeeEEEEe
Confidence 8999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhCCCceecCCCC
Q psy6850 81 DEHSVGVLKDIEKHFGKKIELLDTED 106 (118)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (118)
...+...++.+++.++..++....+.
T Consensus 350 ~~~d~~~~~~ie~~l~~~~~~~~~~~ 375 (456)
T PRK10590 350 CVDEHKLLRDIEKLLKKEIPRIAIPG 375 (456)
T ss_pred cHHHHHHHHHHHHHhcCCCcccccCC
Confidence 99999999999999988886555443
No 11
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.93 E-value=7.3e-26 Score=176.38 Aligned_cols=97 Identities=30% Similarity=0.500 Sum_probs=89.6
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|++++|..++++|++|+++|||||+++++|+|+|+|++||+||+|. +..+|+||+||+||.|..|.+++|+
T Consensus 399 Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~------s~~~yihRiGRaGR~g~~G~ai~f~ 472 (518)
T PLN00206 399 HGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPN------TIKEYIHQIGRASRMGEKGTAIVFV 472 (518)
T ss_pred eCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCC------CHHHHHHhccccccCCCCeEEEEEE
Confidence 9999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhCCCceecC
Q psy6850 81 DEHSVGVLKDIEKHFGKKIELLD 103 (118)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~ 103 (118)
..++...+..+.+.+...-+.+|
T Consensus 473 ~~~~~~~~~~l~~~l~~~~~~vp 495 (518)
T PLN00206 473 NEEDRNLFPELVALLKSSGAAIP 495 (518)
T ss_pred chhHHHHHHHHHHHHHHcCCCCC
Confidence 99888888888777655444444
No 12
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.93 E-value=1.6e-25 Score=177.70 Aligned_cols=104 Identities=34% Similarity=0.627 Sum_probs=99.2
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|++.+|.+++++|+.|+++|||||+++++|+|+|+|++|||||+|. +...|+||+||+||.|+.|.+++|+
T Consensus 276 hgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~------~~e~yvqRiGRtGRaGr~G~ai~~v 349 (629)
T PRK11634 276 NGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPM------DSESYVHRIGRTGRAGRAGRALLFV 349 (629)
T ss_pred eCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCC------CHHHHHHHhccccCCCCcceEEEEe
Confidence 8999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhCCCceecCCCChhhh
Q psy6850 81 DEHSVGVLKDIEKHFGKKIELLDTEDIDDE 110 (118)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (118)
.+.+...++.+++.++..++++..+..+.+
T Consensus 350 ~~~e~~~l~~ie~~~~~~i~~~~~p~~~~~ 379 (629)
T PRK11634 350 ENRERRLLRNIERTMKLTIPEVELPNAELL 379 (629)
T ss_pred chHHHHHHHHHHHHhCCCcceecCCcHHHH
Confidence 999999999999999999999887776544
No 13
>PTZ00424 helicase 45; Provisional
Probab=99.93 E-value=1.8e-25 Score=168.54 Aligned_cols=101 Identities=46% Similarity=0.777 Sum_probs=96.9
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|++++|..++++|++|+++|||||+++++|+|+|++++||+||+|. +...|+||+||+||.|+.|.|++|+
T Consensus 298 h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~------s~~~y~qr~GRagR~g~~G~~i~l~ 371 (401)
T PTZ00424 298 HGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPA------SPENYIHRIGRSGRFGRKGVAINFV 371 (401)
T ss_pred eCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCC------CHHHEeecccccccCCCCceEEEEE
Confidence 8999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhCCCceecCCCCh
Q psy6850 81 DEHSVGVLKDIEKHFGKKIELLDTEDI 107 (118)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (118)
.+++...++.+++.++..+++.+++..
T Consensus 372 ~~~~~~~~~~~e~~~~~~~~~~~~~~~ 398 (401)
T PTZ00424 372 TPDDIEQLKEIERHYNTQIEEMPMEVA 398 (401)
T ss_pred cHHHHHHHHHHHHHHCCcccccCcchh
Confidence 999999999999999999988776654
No 14
>PTZ00110 helicase; Provisional
Probab=99.92 E-value=1.3e-25 Score=175.93 Aligned_cols=97 Identities=34% Similarity=0.574 Sum_probs=91.6
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|++++|..++++|++|+++|||||+++++|+|+|+|++|||||+|. +...|+||+||+||.|+.|.+++|+
T Consensus 408 hg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~------s~~~yvqRiGRtGR~G~~G~ai~~~ 481 (545)
T PTZ00110 408 HGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPN------QIEDYVHRIGRTGRAGAKGASYTFL 481 (545)
T ss_pred ECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCC------CHHHHHHHhcccccCCCCceEEEEE
Confidence 8999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhCCCceecC
Q psy6850 81 DEHSVGVLKDIEKHFGKKIELLD 103 (118)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~ 103 (118)
++.+....+.+.+.+...-+++|
T Consensus 482 ~~~~~~~~~~l~~~l~~~~q~vp 504 (545)
T PTZ00110 482 TPDKYRLARDLVKVLREAKQPVP 504 (545)
T ss_pred CcchHHHHHHHHHHHHHccCCCC
Confidence 99999888888888766666555
No 15
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.92 E-value=4.7e-25 Score=168.24 Aligned_cols=95 Identities=42% Similarity=0.690 Sum_probs=90.5
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|++.+|..++++|++|+++|||||+++++|+|+|++++|||||+|. +...|+||+||+||.|..|.+++|+
T Consensus 276 ~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~------s~~~yiqr~GR~gR~g~~g~ai~l~ 349 (434)
T PRK11192 276 EGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPR------SADTYLHRIGRTGRAGRKGTAISLV 349 (434)
T ss_pred cCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCC------CHHHHhhcccccccCCCCceEEEEe
Confidence 8999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhCCCcee
Q psy6850 81 DEHSVGVLKDIEKHFGKKIEL 101 (118)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~ 101 (118)
...+...+..+++++...+..
T Consensus 350 ~~~d~~~~~~i~~~~~~~~~~ 370 (434)
T PRK11192 350 EAHDHLLLGKIERYIEEPLKA 370 (434)
T ss_pred cHHHHHHHHHHHHHHhccccc
Confidence 999999999999887766544
No 16
>KOG0326|consensus
Probab=99.92 E-value=1.5e-25 Score=163.52 Aligned_cols=99 Identities=39% Similarity=0.682 Sum_probs=96.5
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
|+.|-++.|.+++.+|+.|.++.|||||.+-||+|++.|++|||||+|. ++++|+||+||+||+|..|.++.++
T Consensus 353 HakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk------~aEtYLHRIGRsGRFGhlGlAInLi 426 (459)
T KOG0326|consen 353 HAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPK------NAETYLHRIGRSGRFGHLGLAINLI 426 (459)
T ss_pred HHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCC------CHHHHHHHccCCccCCCcceEEEEE
Confidence 8899999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhCCCceecCCC
Q psy6850 81 DEHSVGVLKDIEKHFGKKIELLDTE 105 (118)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (118)
+-+|...+..+|..++++|.++|..
T Consensus 427 tyedrf~L~~IE~eLGtEI~pip~~ 451 (459)
T KOG0326|consen 427 TYEDRFNLYRIEQELGTEIKPIPSN 451 (459)
T ss_pred ehhhhhhHHHHHHHhccccccCCCc
Confidence 9999999999999999999999854
No 17
>KOG0336|consensus
Probab=99.92 E-value=1.2e-25 Score=168.32 Aligned_cols=108 Identities=26% Similarity=0.539 Sum_probs=100.3
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+-.|.+|+..+++|++|+++||||||+++||+|+|++.+|+|||+|. +.+.|+||+||+||+|+.|.+++|+
T Consensus 496 HG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~------nIeeYVHRvGrtGRaGr~G~sis~l 569 (629)
T KOG0336|consen 496 HGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPR------NIEEYVHRVGRTGRAGRTGTSISFL 569 (629)
T ss_pred cCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCc------cHHHHHHHhcccccCCCCcceEEEE
Confidence 9999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhCCCceecCCCChhhhhhcc
Q psy6850 81 DEHSVGVLKDIEKHFGKKIELLDTEDIDDEGNFR 114 (118)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (118)
+..+......+.+.+...-+++|.+.....+.+.
T Consensus 570 t~~D~~~a~eLI~ILe~aeQevPdeL~~mAeryk 603 (629)
T KOG0336|consen 570 TRNDWSMAEELIQILERAEQEVPDELVRMAERYK 603 (629)
T ss_pred ehhhHHHHHHHHHHHHHhhhhCcHHHHHHHHHHH
Confidence 9999999999999888888888776666555543
No 18
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.92 E-value=1.1e-24 Score=168.18 Aligned_cols=94 Identities=39% Similarity=0.696 Sum_probs=90.9
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|++++|.+++++|++|++++||||+++++|+|+|++++||+||+|. +..+|+||+||+||.|..|.+++|+
T Consensus 366 ~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~------s~~~y~Qr~GRaGR~g~~g~~i~~~ 439 (475)
T PRK01297 366 SGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPE------DPDDYVHRIGRTGRAGASGVSISFA 439 (475)
T ss_pred ECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCC------CHHHHHHhhCccCCCCCCceEEEEe
Confidence 8999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhCCCce
Q psy6850 81 DEHSVGVLKDIEKHFGKKIE 100 (118)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~ 100 (118)
..+|...+..+++.++.++.
T Consensus 440 ~~~d~~~~~~~~~~~~~~~~ 459 (475)
T PRK01297 440 GEDDAFQLPEIEELLGRKIS 459 (475)
T ss_pred cHHHHHHHHHHHHHhCCCCc
Confidence 99999999999999998874
No 19
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.92 E-value=6.4e-25 Score=172.79 Aligned_cols=96 Identities=40% Similarity=0.625 Sum_probs=91.5
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|++.+|.+++++|++|+++|||||+++++|||+|+|++|||||+|. +...|+||+||+||.|..|.+++|+
T Consensus 288 hg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~------s~~~yvqRiGRaGR~G~~G~ai~~~ 361 (572)
T PRK04537 288 SGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPF------DAEDYVHRIGRTARLGEEGDAISFA 361 (572)
T ss_pred eCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCC------CHHHHhhhhcccccCCCCceEEEEe
Confidence 8999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhCCCceec
Q psy6850 81 DEHSVGVLKDIEKHFGKKIELL 102 (118)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~ 102 (118)
...+...+..+++.++.+++..
T Consensus 362 ~~~~~~~l~~i~~~~~~~~~~~ 383 (572)
T PRK04537 362 CERYAMSLPDIEAYIEQKIPVE 383 (572)
T ss_pred cHHHHHHHHHHHHHHcCCCCcc
Confidence 9988889999999888776544
No 20
>KOG0342|consensus
Probab=99.91 E-value=1.2e-24 Score=164.92 Aligned_cols=96 Identities=33% Similarity=0.569 Sum_probs=89.5
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+++|..|..++.+|+..+.-||||||+++||+|+|+|++||+||+|. ++.+|+||+||+||.|..|.++.++
T Consensus 361 Hgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~------d~~~YIHRvGRTaR~gk~G~alL~l 434 (543)
T KOG0342|consen 361 HGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPS------DPEQYIHRVGRTAREGKEGKALLLL 434 (543)
T ss_pred hcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCC------CHHHHHHHhccccccCCCceEEEEe
Confidence 9999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhCCCceecCCC
Q psy6850 81 DEHSVGVLKDIEKHFGKKIELLDTE 105 (118)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (118)
.+.+..++++++ ..++++.+.+
T Consensus 435 ~p~El~Flr~LK---~lpl~~~e~~ 456 (543)
T KOG0342|consen 435 APWELGFLRYLK---KLPLEEFEFP 456 (543)
T ss_pred ChhHHHHHHHHh---hCCCcccCCC
Confidence 999999999998 3455554443
No 21
>KOG0338|consensus
Probab=99.90 E-value=3.1e-24 Score=163.81 Aligned_cols=88 Identities=42% Similarity=0.647 Sum_probs=86.0
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|+|++|...+++|+.+++++|||||+++||+||++|..||||++|. +...|+||+||+.|+|+.|.+++|+
T Consensus 457 HGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~------t~e~Y~HRVGRTARAGRaGrsVtlv 530 (691)
T KOG0338|consen 457 HGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPK------TIEHYLHRVGRTARAGRAGRSVTLV 530 (691)
T ss_pred cccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCch------hHHHHHHHhhhhhhcccCcceEEEe
Confidence 9999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCcHHHHHHHHHH
Q psy6850 81 DEHSVGVLKDIEKH 94 (118)
Q Consensus 81 ~~~~~~~~~~~~~~ 94 (118)
.+.+...++.+-+.
T Consensus 531 gE~dRkllK~iik~ 544 (691)
T KOG0338|consen 531 GESDRKLLKEIIKS 544 (691)
T ss_pred ccccHHHHHHHHhh
Confidence 99999999888876
No 22
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.90 E-value=1.1e-23 Score=162.46 Aligned_cols=88 Identities=19% Similarity=0.290 Sum_probs=83.3
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|++++|.+++++|++|+++|||||+++++|+|+|+|++||+|++|. +...|+||+||+||.|..|.|++|+
T Consensus 257 H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~------s~~~y~Qr~GRaGR~G~~~~~~~~~ 330 (470)
T TIGR00614 257 HAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPK------SMESYYQESGRAGRDGLPSECHLFY 330 (470)
T ss_pred eCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCC------CHHHHHhhhcCcCCCCCCceEEEEe
Confidence 9999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCcHHHHHHHHHH
Q psy6850 81 DEHSVGVLKDIEKH 94 (118)
Q Consensus 81 ~~~~~~~~~~~~~~ 94 (118)
.+.+...++.+...
T Consensus 331 ~~~d~~~~~~~~~~ 344 (470)
T TIGR00614 331 APADINRLRRLLME 344 (470)
T ss_pred chhHHHHHHHHHhc
Confidence 98888777666543
No 23
>KOG0345|consensus
Probab=99.90 E-value=7.8e-24 Score=160.13 Aligned_cols=103 Identities=30% Similarity=0.474 Sum_probs=91.8
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||.|++.+|.+++++|+.....+|+|||+++||||+|+|++||+||+|. +++.++||+||+||.|+.|.+++|+
T Consensus 288 HGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~------~~~~FvHR~GRTaR~gr~G~Aivfl 361 (567)
T KOG0345|consen 288 HGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPK------DPSSFVHRCGRTARAGREGNAIVFL 361 (567)
T ss_pred cchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCC------ChhHHHhhcchhhhccCccceEEEe
Confidence 9999999999999999998899999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhCCCceecCCCChhh
Q psy6850 81 DEHSVGVLKDIEKHFGKKIELLDTEDIDD 109 (118)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (118)
.+.+..++..+.-.-...+++++.+....
T Consensus 362 ~p~E~aYveFl~i~~~v~le~~~~e~~~~ 390 (567)
T KOG0345|consen 362 NPREEAYVEFLRIKGKVELERIDTEKASL 390 (567)
T ss_pred cccHHHHHHHHHhcCccchhhhcccccch
Confidence 99777766666544456777777665443
No 24
>KOG0335|consensus
Probab=99.90 E-value=1e-23 Score=160.67 Aligned_cols=96 Identities=38% Similarity=0.630 Sum_probs=87.4
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+.++.+|.+.++.|+.|...+||||++++||+|+|+|++|||||+|. +..+|+||+||+||.|+.|.+++|+
T Consensus 368 hg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~------d~d~YvHRIGRTGR~Gn~G~atsf~ 441 (482)
T KOG0335|consen 368 HGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPA------DIDDYVHRIGRTGRVGNGGRATSFF 441 (482)
T ss_pred cchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCc------chhhHHHhccccccCCCCceeEEEe
Confidence 8999999999999999999999999999999999999999999999999 8999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhCCCceec
Q psy6850 81 DEHSVGVLKDIEKHFGKKIELL 102 (118)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~ 102 (118)
...+....+.+.+.+...-+++
T Consensus 442 n~~~~~i~~~L~~~l~ea~q~v 463 (482)
T KOG0335|consen 442 NEKNQNIAKALVEILTEANQEV 463 (482)
T ss_pred ccccchhHHHHHHHHHHhcccC
Confidence 9887777777777654444433
No 25
>KOG0341|consensus
Probab=99.89 E-value=6.8e-24 Score=158.23 Aligned_cols=89 Identities=37% Similarity=0.686 Sum_probs=81.1
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+.++++|...++.|+.|+.+||||||+++.|+|+|++.+|||||+|. ..++|+||+||+||.|+.|.+.+|+
T Consensus 452 HGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~------eIENYVHRIGRTGRsg~~GiATTfI 525 (610)
T KOG0341|consen 452 HGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPE------EIENYVHRIGRTGRSGKTGIATTFI 525 (610)
T ss_pred ecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChH------HHHHHHHHhcccCCCCCcceeeeee
Confidence 9999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCC-cHHHHHHHHHHh
Q psy6850 81 DEH-SVGVLKDIEKHF 95 (118)
Q Consensus 81 ~~~-~~~~~~~~~~~~ 95 (118)
+.. +...+..+...+
T Consensus 526 NK~~~esvLlDLK~LL 541 (610)
T KOG0341|consen 526 NKNQEESVLLDLKHLL 541 (610)
T ss_pred cccchHHHHHHHHHHH
Confidence 854 444555554444
No 26
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.89 E-value=1.8e-23 Score=171.85 Aligned_cols=87 Identities=18% Similarity=0.252 Sum_probs=82.4
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|++++|..++++|+.|+++|||||++++||||+|+|++||||++|. +.+.|+||+|||||.|..|.|++|+
T Consensus 711 HAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPk------SiEsYyQriGRAGRDG~~g~cILly 784 (1195)
T PLN03137 711 HGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPK------SIEGYHQECGRAGRDGQRSSCVLYY 784 (1195)
T ss_pred eCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCC------CHHHHHhhhcccCCCCCCceEEEEe
Confidence 9999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCcHHHHHHHHH
Q psy6850 81 DEHSVGVLKDIEK 93 (118)
Q Consensus 81 ~~~~~~~~~~~~~ 93 (118)
...|...++.+..
T Consensus 785 s~~D~~~~~~lI~ 797 (1195)
T PLN03137 785 SYSDYIRVKHMIS 797 (1195)
T ss_pred cHHHHHHHHHHHh
Confidence 8877776666654
No 27
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.89 E-value=2.5e-23 Score=167.74 Aligned_cols=97 Identities=16% Similarity=0.193 Sum_probs=89.1
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||++++++|.+++++|++|++++||||+++++|||+|++++||+||+|. +..+|+||+|||||.|+.|.+++++
T Consensus 310 hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~------s~~~y~qRiGRaGR~G~~g~ai~v~ 383 (742)
T TIGR03817 310 RAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPG------TRASLWQQAGRAGRRGQGALVVLVA 383 (742)
T ss_pred ecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCC------CHHHHHHhccccCCCCCCcEEEEEe
Confidence 8999999999999999999999999999999999999999999999999 9999999999999999999999998
Q ss_pred c--CCcHHHHHHHHHHhCCCceecC
Q psy6850 81 D--EHSVGVLKDIEKHFGKKIELLD 103 (118)
Q Consensus 81 ~--~~~~~~~~~~~~~~~~~~~~~~ 103 (118)
. +.|...+..+++.++.+++...
T Consensus 384 ~~~~~d~~~~~~~~~~~~~~~e~~~ 408 (742)
T TIGR03817 384 RDDPLDTYLVHHPEALFDRPVEATV 408 (742)
T ss_pred CCChHHHHHHhCHHHHhcCCCccce
Confidence 6 4466677888888887776643
No 28
>KOG0348|consensus
Probab=99.89 E-value=2.6e-23 Score=159.40 Aligned_cols=98 Identities=31% Similarity=0.530 Sum_probs=89.8
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|+|++|..+++.|+...-.||+|||+++||+|+|+|.+||+||.|. ++.+|+||+||+.|.|..|.++.|.
T Consensus 478 HGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~------s~adylHRvGRTARaG~kG~alLfL 551 (708)
T KOG0348|consen 478 HGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPF------STADYLHRVGRTARAGEKGEALLFL 551 (708)
T ss_pred cCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCC------CHHHHHHHhhhhhhccCCCceEEEe
Confidence 9999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhCCCceecCCC
Q psy6850 81 DEHSVGVLKDIEKHFGKKIELLDTE 105 (118)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (118)
.+.+.++++.+++.- ..+.+.+++
T Consensus 552 ~P~Eaey~~~l~~~~-~~l~q~~~~ 575 (708)
T KOG0348|consen 552 LPSEAEYVNYLKKHH-IMLLQFDME 575 (708)
T ss_pred cccHHHHHHHHHhhc-chhhccchh
Confidence 999999888887763 335555443
No 29
>KOG0327|consensus
Probab=99.89 E-value=4.2e-23 Score=152.75 Aligned_cols=102 Identities=48% Similarity=0.778 Sum_probs=98.6
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|.+.+|..++.+|+.|..++||+|+.+++|+|+.++..||||++|. ..++|+||+||+||.|++|.+++++
T Consensus 294 ~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~------~~~~yihR~gr~gr~grkg~~in~v 367 (397)
T KOG0327|consen 294 HGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPA------RKENYIHRIGRAGRFGRKGVAINFV 367 (397)
T ss_pred ecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeecccc------chhhhhhhcccccccCCCceeeeee
Confidence 8999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhCCCceecCCCChh
Q psy6850 81 DEHSVGVLKDIEKHFGKKIELLDTEDID 108 (118)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (118)
...+...+++++++++.+++++|....+
T Consensus 368 ~~~d~~~lk~ie~~y~~~i~e~p~~~~~ 395 (397)
T KOG0327|consen 368 TEEDVRDLKDIEKFYNTPIEELPSNFAD 395 (397)
T ss_pred hHhhHHHHHhHHHhcCCcceecccchhh
Confidence 9999999999999999999999876543
No 30
>KOG0344|consensus
Probab=99.88 E-value=3.7e-23 Score=159.32 Aligned_cols=89 Identities=37% Similarity=0.639 Sum_probs=84.2
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+.++.+|..++++||.|++++|+||++++||+|+-++++|||||+|. +..+|+||+||+||+|+.|.+++|+
T Consensus 419 h~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~------s~~syihrIGRtgRag~~g~Aitfy 492 (593)
T KOG0344|consen 419 HGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQ------SDLSYIHRIGRTGRAGRSGKAITFY 492 (593)
T ss_pred ecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCc------hhHHHHHHhhccCCCCCCcceEEEe
Confidence 8999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHh
Q psy6850 81 DEHSVGVLKDIEKHF 95 (118)
Q Consensus 81 ~~~~~~~~~~~~~~~ 95 (118)
+..+...++.+....
T Consensus 493 td~d~~~ir~iae~~ 507 (593)
T KOG0344|consen 493 TDQDMPRIRSIAEVM 507 (593)
T ss_pred ccccchhhhhHHHHH
Confidence 998888776665543
No 31
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.88 E-value=7e-23 Score=162.24 Aligned_cols=86 Identities=23% Similarity=0.363 Sum_probs=81.1
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|++++|.+++++|+.|+++|||||+++++|+|+|+|++||+||+|. +...|+||+|||||.|.+|.|++|+
T Consensus 267 Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~------s~~~y~Qr~GRaGR~G~~~~~ill~ 340 (607)
T PRK11057 267 HAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPR------NIESYYQETGRAGRDGLPAEAMLFY 340 (607)
T ss_pred cCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCC------CHHHHHHHhhhccCCCCCceEEEEe
Confidence 9999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCcHHHHHHHH
Q psy6850 81 DEHSVGVLKDIE 92 (118)
Q Consensus 81 ~~~~~~~~~~~~ 92 (118)
.+.+...++.+.
T Consensus 341 ~~~d~~~~~~~~ 352 (607)
T PRK11057 341 DPADMAWLRRCL 352 (607)
T ss_pred CHHHHHHHHHHH
Confidence 988776655544
No 32
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.86 E-value=5.5e-22 Score=156.66 Aligned_cols=87 Identities=31% Similarity=0.418 Sum_probs=81.4
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|++++|..++++|+.|+++|||||+++++|+|+|+|++||+|++|. +...|+|++|||||.|..|.|++++
T Consensus 255 H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~------s~~~y~Q~~GRaGR~G~~~~~il~~ 328 (591)
T TIGR01389 255 HAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPG------NLESYYQEAGRAGRDGLPAEAILLY 328 (591)
T ss_pred ECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCC------CHHHHhhhhccccCCCCCceEEEec
Confidence 8999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCcHHHHHHHHH
Q psy6850 81 DEHSVGVLKDIEK 93 (118)
Q Consensus 81 ~~~~~~~~~~~~~ 93 (118)
.+.+...++.+..
T Consensus 329 ~~~d~~~~~~~i~ 341 (591)
T TIGR01389 329 SPADIALLKRRIE 341 (591)
T ss_pred CHHHHHHHHHHHh
Confidence 8877766655543
No 33
>KOG0347|consensus
Probab=99.86 E-value=3.5e-22 Score=153.71 Aligned_cols=91 Identities=34% Similarity=0.526 Sum_probs=87.5
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
|+.|.|.+|.+.+++|+.....||||||+++||+|||+|.+||+|.+|. +.+-|+||.||+.|++..|+.++++
T Consensus 494 HA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPr------tseiYVHRSGRTARA~~~Gvsvml~ 567 (731)
T KOG0347|consen 494 HASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPR------TSEIYVHRSGRTARANSEGVSVMLC 567 (731)
T ss_pred hHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCC------ccceeEecccccccccCCCeEEEEe
Confidence 8999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhCC
Q psy6850 81 DEHSVGVLKDIEKHFGK 97 (118)
Q Consensus 81 ~~~~~~~~~~~~~~~~~ 97 (118)
.+.+...++.+.+-++.
T Consensus 568 ~P~e~~~~~KL~ktL~k 584 (731)
T KOG0347|consen 568 GPQEVGPLKKLCKTLKK 584 (731)
T ss_pred ChHHhHHHHHHHHHHhh
Confidence 99999988888887754
No 34
>KOG0350|consensus
Probab=99.86 E-value=1e-21 Score=149.67 Aligned_cols=90 Identities=39% Similarity=0.577 Sum_probs=84.3
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEec
Q psy6850 2 GKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLVD 81 (118)
Q Consensus 2 g~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~~ 81 (118)
|+++...|.+.+++|..|++++|||||+++||+|+.+|+.|||||+|. +...|+||+||++|+|+.|.|++++.
T Consensus 465 ~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~------~~ktyVHR~GRTARAgq~G~a~tll~ 538 (620)
T KOG0350|consen 465 GQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPA------SDKTYVHRAGRTARAGQDGYAITLLD 538 (620)
T ss_pred hhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCc------hhhHHHHhhcccccccCCceEEEeec
Confidence 688999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred CCcHHHHHHHHHHhCC
Q psy6850 82 EHSVGVLKDIEKHFGK 97 (118)
Q Consensus 82 ~~~~~~~~~~~~~~~~ 97 (118)
..+...+.++.+..+.
T Consensus 539 ~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 539 KHEKRLFSKLLKKTNL 554 (620)
T ss_pred cccchHHHHHHHHhcc
Confidence 9888877777766543
No 35
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.86 E-value=2.2e-21 Score=151.73 Aligned_cols=89 Identities=27% Similarity=0.367 Sum_probs=84.8
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|+.++|..+.++|..++++|+|||.++++|||.|+|++|||||+|. +.++|+|.+|||||.|.+..|++|+
T Consensus 261 HaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~------s~EsYyQE~GRAGRDG~~a~aill~ 334 (590)
T COG0514 261 HAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPG------SIESYYQETGRAGRDGLPAEAILLY 334 (590)
T ss_pred cCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCC------CHHHHHHHHhhccCCCCcceEEEee
Confidence 9999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHh
Q psy6850 81 DEHSVGVLKDIEKHF 95 (118)
Q Consensus 81 ~~~~~~~~~~~~~~~ 95 (118)
.+.|....+.+.+..
T Consensus 335 ~~~D~~~~~~~i~~~ 349 (590)
T COG0514 335 SPEDIRWQRYLIEQS 349 (590)
T ss_pred ccccHHHHHHHHHhh
Confidence 999988777766653
No 36
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.85 E-value=1.8e-21 Score=116.26 Aligned_cols=65 Identities=38% Similarity=0.653 Sum_probs=63.8
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCC
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFG 71 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~ 71 (118)
||++++.+|..++++|++++.+|||||+++++|+|+|.+++||++++|+ ++..|.|++||++|.|
T Consensus 14 ~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~------~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 14 HGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPW------SPEEYIQRIGRAGRIG 78 (78)
T ss_dssp STTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSES------SHHHHHHHHTTSSTTT
T ss_pred ECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCC------CHHHHHHHhhcCCCCC
Confidence 8999999999999999999999999999999999999999999999999 9999999999999975
No 37
>KOG0343|consensus
Probab=99.83 E-value=6.7e-21 Score=146.84 Aligned_cols=98 Identities=30% Similarity=0.496 Sum_probs=89.7
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||.|+|..|..++.+|-...--||+|||+++||+|+|.|++||++|.|. +..+|+||+||+.|.+..|.++.++
T Consensus 346 ~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPe------dv~tYIHRvGRtAR~~~~G~sll~L 419 (758)
T KOG0343|consen 346 HGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPE------DVDTYIHRVGRTARYKERGESLLML 419 (758)
T ss_pred ccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCch------hHHHHHHHhhhhhcccCCCceEEEE
Confidence 8999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCc-HHHHHHHHHHhCCCceecCCC
Q psy6850 81 DEHS-VGVLKDIEKHFGKKIELLDTE 105 (118)
Q Consensus 81 ~~~~-~~~~~~~~~~~~~~~~~~~~~ 105 (118)
.+.+ ..++..+++. ++++.++...
T Consensus 420 ~psEeE~~l~~Lq~k-~I~i~~i~i~ 444 (758)
T KOG0343|consen 420 TPSEEEAMLKKLQKK-KIPIKEIKID 444 (758)
T ss_pred cchhHHHHHHHHHHc-CCCHHhhccC
Confidence 9988 5566777665 4777776654
No 38
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.81 E-value=9.8e-20 Score=144.89 Aligned_cols=76 Identities=18% Similarity=0.278 Sum_probs=71.8
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|++++|.+++++|++|+.+|||||+++++|+|+|++++||+++.|. +....|.||+||+||.|..|.|++++
T Consensus 489 HG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r-----~gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 489 HGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAER-----FGLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred eCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCc-----CCHHHHHHHhhhcccCCCCcEEEEEE
Confidence 9999999999999999999999999999999999999999999999986 24678999999999999999999998
Q ss_pred c
Q psy6850 81 D 81 (118)
Q Consensus 81 ~ 81 (118)
.
T Consensus 564 ~ 564 (630)
T TIGR00643 564 K 564 (630)
T ss_pred C
Confidence 3
No 39
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.81 E-value=1.1e-19 Score=145.57 Aligned_cols=76 Identities=18% Similarity=0.271 Sum_probs=72.1
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|++++|.+++++|++|+++|||||+++++|+|+|++++||+++.|. +....|.||+||+||.|..|.|++++
T Consensus 512 HG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r-----~gls~lhQ~~GRvGR~g~~g~~ill~ 586 (681)
T PRK10917 512 HGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAER-----FGLAQLHQLRGRVGRGAAQSYCVLLY 586 (681)
T ss_pred eCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCC-----CCHHHHHHHhhcccCCCCceEEEEEE
Confidence 9999999999999999999999999999999999999999999999986 24678999999999999999999999
Q ss_pred c
Q psy6850 81 D 81 (118)
Q Consensus 81 ~ 81 (118)
.
T Consensus 587 ~ 587 (681)
T PRK10917 587 K 587 (681)
T ss_pred C
Confidence 5
No 40
>KOG0339|consensus
Probab=99.81 E-value=4.4e-20 Score=141.37 Aligned_cols=102 Identities=31% Similarity=0.512 Sum_probs=94.3
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|.|.+|.+++.+|+.+...|||+||++++|+|+|++..|||||+.+ +.+.|.||+||+||.|..|++++++
T Consensus 499 hgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ar------dIdththrigrtgRag~kGvayTlv 572 (731)
T KOG0339|consen 499 HGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFAR------DIDTHTHRIGRTGRAGEKGVAYTLV 572 (731)
T ss_pred cCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccc------hhHHHHHHhhhcccccccceeeEEe
Confidence 9999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhCCCceecCCCChh
Q psy6850 81 DEHSVGVLKDIEKHFGKKIELLDTEDID 108 (118)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (118)
++.+..+.-.|...+...-+.+|.+..+
T Consensus 573 TeKDa~fAG~LVnnLe~agQnVP~~l~d 600 (731)
T KOG0339|consen 573 TEKDAEFAGHLVNNLEGAGQNVPDELMD 600 (731)
T ss_pred chhhHHHhhHHHHHHhhccccCChHHHH
Confidence 9999988888888777777777655443
No 41
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.80 E-value=1.6e-19 Score=148.17 Aligned_cols=89 Identities=20% Similarity=0.229 Sum_probs=78.0
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|++++|.+++++|++|+++|||||+++++|+|+|++++||+++.|. +....|+||+||+||.++.|.|++++
T Consensus 693 HG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~-----~gls~l~Qr~GRvGR~g~~g~aill~ 767 (926)
T TIGR00580 693 HGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADK-----FGLAQLYQLRGRVGRSKKKAYAYLLY 767 (926)
T ss_pred cCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCC-----CCHHHHHHHhcCCCCCCCCeEEEEEE
Confidence 9999999999999999999999999999999999999999999999875 24668999999999999999999998
Q ss_pred cCC------cHHHHHHHHHH
Q psy6850 81 DEH------SVGVLKDIEKH 94 (118)
Q Consensus 81 ~~~------~~~~~~~~~~~ 94 (118)
... ....++.+++.
T Consensus 768 ~~~~~l~~~~~~RL~~~~~~ 787 (926)
T TIGR00580 768 PHQKALTEDAQKRLEAIQEF 787 (926)
T ss_pred CCcccCCHHHHHHHHHHHHh
Confidence 643 33455555554
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.79 E-value=3.9e-19 Score=145.70 Aligned_cols=97 Identities=21% Similarity=0.267 Sum_probs=76.7
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCC-C--ceEEE
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFG-K--CGIAI 77 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~-~--~g~~~ 77 (118)
||+|++++|..++++|++|++++||||+++++|||+|++++||+|+.|. +...|+||+||+||.+ . .|.++
T Consensus 321 Hg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~------sv~~ylQRiGRaGR~~g~~~~g~ii 394 (876)
T PRK13767 321 HSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPK------SVSRLLQRIGRAGHRLGEVSKGRII 394 (876)
T ss_pred eCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCC------CHHHHHHhcccCCCCCCCCCcEEEE
Confidence 9999999999999999999999999999999999999999999999999 9999999999999863 3 35554
Q ss_pred EEecCCcH-HHHHHHHHHhCCCceecCC
Q psy6850 78 NLVDEHSV-GVLKDIEKHFGKKIELLDT 104 (118)
Q Consensus 78 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 104 (118)
.. ...+. ....-++......++.+..
T Consensus 395 ~~-~~~~l~e~~~~~~~~~~~~ie~~~~ 421 (876)
T PRK13767 395 VV-DRDDLVECAVLLKKAREGKIDRVHI 421 (876)
T ss_pred Ec-CchhHHHHHHHHHHHHhCCCCCCCC
Confidence 43 33332 2222334444555555443
No 43
>KOG0334|consensus
Probab=99.79 E-value=1.8e-19 Score=145.89 Aligned_cols=89 Identities=34% Similarity=0.636 Sum_probs=85.8
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+.++.+|..++++|+++.+++||||+++++|+|+.++.+|||||+|. -...|+||+||+||.|+.|.+++|+
T Consensus 644 HGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pn------h~edyvhR~gRTgragrkg~AvtFi 717 (997)
T KOG0334|consen 644 HGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPN------HYEDYVHRVGRTGRAGRKGAAVTFI 717 (997)
T ss_pred cCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccch------hHHHHHHHhcccccCCccceeEEEe
Confidence 9999999999999999999999999999999999999999999999998 8899999999999999999999999
Q ss_pred cCCcHHHHHHHHHHh
Q psy6850 81 DEHSVGVLKDIEKHF 95 (118)
Q Consensus 81 ~~~~~~~~~~~~~~~ 95 (118)
.+.+....-.|.+.+
T Consensus 718 ~p~q~~~a~dl~~al 732 (997)
T KOG0334|consen 718 TPDQLKYAGDLCKAL 732 (997)
T ss_pred ChHHhhhHHHHHHHH
Confidence 998888888888887
No 44
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.78 E-value=7.2e-19 Score=134.32 Aligned_cols=75 Identities=27% Similarity=0.372 Sum_probs=71.2
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEec
Q psy6850 2 GKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLVD 81 (118)
Q Consensus 2 g~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~~ 81 (118)
.||+|.++.+++++|+.|+.++||||++.++|+|+|++++||.|+.-+ |+..++||.||+||. +.|.++++++
T Consensus 407 ~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvp------SeIR~IQR~GRTGR~-r~Grv~vLvt 479 (542)
T COG1111 407 KGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVP------SEIRSIQRKGRTGRK-RKGRVVVLVT 479 (542)
T ss_pred cccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCc------HHHHHHHhhCccccC-CCCeEEEEEe
Confidence 479999999999999999999999999999999999999999999877 999999999999997 7899999998
Q ss_pred CC
Q psy6850 82 EH 83 (118)
Q Consensus 82 ~~ 83 (118)
..
T Consensus 480 ~g 481 (542)
T COG1111 480 EG 481 (542)
T ss_pred cC
Confidence 65
No 45
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.78 E-value=7.6e-19 Score=144.19 Aligned_cols=91 Identities=15% Similarity=0.189 Sum_probs=77.9
Q ss_pred CCCCCHHHHHHHHHHHhcC--CCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEE
Q psy6850 1 MGKGPNTSSSSSLNSFTSC--KEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAIN 78 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g--~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~ 78 (118)
||+|++.+|.++++.|+++ ..+|||||+++++|+|++.+++|||||+|+ ++..|.||+||++|.|+.+.+.+
T Consensus 525 hG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~------nP~~~eQRIGR~~RiGQ~~~V~i 598 (956)
T PRK04914 525 HEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPF------NPDLLEQRIGRLDRIGQKHDIQI 598 (956)
T ss_pred ECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCC------CHHHHHHHhcccccCCCCceEEE
Confidence 8999999999999999985 599999999999999999999999999999 99999999999999999888777
Q ss_pred EecCCcHHHHHHHHHHhCC
Q psy6850 79 LVDEHSVGVLKDIEKHFGK 97 (118)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~ 97 (118)
++...+...-..+.+.+..
T Consensus 599 ~~~~~~~t~~e~i~~~~~~ 617 (956)
T PRK04914 599 HVPYLEGTAQERLFRWYHE 617 (956)
T ss_pred EEccCCCCHHHHHHHHHhh
Confidence 7653333334455554444
No 46
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.77 E-value=1.1e-18 Score=147.45 Aligned_cols=100 Identities=23% Similarity=0.346 Sum_probs=80.5
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccC-CCceEEEEE
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRF-GKCGIAINL 79 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~-~~~g~~~~~ 79 (118)
||+|++++|..+++.|++|++++||||+.+++|||+++|++||+|+.|. +..+|+||+||+||. +..+.++.+
T Consensus 308 HGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~------sVas~LQRiGRAGR~~gg~s~gli~ 381 (1490)
T PRK09751 308 HGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPL------SVASGLQRIGRAGHQVGGVSKGLFF 381 (1490)
T ss_pred cccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCC------CHHHHHHHhCCCCCCCCCccEEEEE
Confidence 8999999999999999999999999999999999999999999999999 999999999999986 334445544
Q ss_pred ecCCc--HHHHHHHHHHhCCCceecCCCC
Q psy6850 80 VDEHS--VGVLKDIEKHFGKKIELLDTED 106 (118)
Q Consensus 80 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 106 (118)
..... .....-++.+....++.+..+.
T Consensus 382 p~~r~dlle~~~~ve~~l~g~iE~~~~p~ 410 (1490)
T PRK09751 382 PRTRRDLVDSAVIVECMFAGRLENLTPPH 410 (1490)
T ss_pred eCcHHHHHhhHHHHHHHhcCCCCccCCCC
Confidence 33211 1122336677777777765543
No 47
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.77 E-value=1e-18 Score=145.80 Aligned_cols=77 Identities=21% Similarity=0.230 Sum_probs=68.6
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|++++|.+++.+|++|+++|||||+++++|+|+|++++||..+... ++...|+||+||+||.++.|.|++++
T Consensus 842 HG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~-----fglaq~~Qr~GRvGR~g~~g~a~ll~ 916 (1147)
T PRK10689 842 HGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADH-----FGLAQLHQLRGRVGRSHHQAYAWLLT 916 (1147)
T ss_pred eCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCC-----CCHHHHHHHhhccCCCCCceEEEEEe
Confidence 9999999999999999999999999999999999999999999544322 13457999999999999999999998
Q ss_pred cC
Q psy6850 81 DE 82 (118)
Q Consensus 81 ~~ 82 (118)
..
T Consensus 917 ~~ 918 (1147)
T PRK10689 917 PH 918 (1147)
T ss_pred CC
Confidence 53
No 48
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.76 E-value=2.5e-18 Score=137.35 Aligned_cols=102 Identities=17% Similarity=0.229 Sum_probs=90.7
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecC-----CCCCCCCCCcchhhhhhcccccCCCceE
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDM-----PIDMNGQADCETYLHRIGRTGRFGKCGI 75 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~-----p~~~~~~~~~~~y~qr~GR~gR~~~~g~ 75 (118)
||++++.+|..++++|+.|++.|||||+++++|+|+|++++||++|. |. +..+|+||+||+||. ..|.
T Consensus 477 h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d~eifG~~~------~~~~yiqr~GR~gR~-~~G~ 549 (652)
T PRK05298 477 HSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLR------SERSLIQTIGRAARN-VNGK 549 (652)
T ss_pred ECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEEeCCcccccCC------CHHHHHHHhccccCC-CCCE
Confidence 89999999999999999999999999999999999999999999885 66 889999999999996 7899
Q ss_pred EEEEecC---------CcHHHHHHHHHHhCCCceecCCCChhh
Q psy6850 76 AINLVDE---------HSVGVLKDIEKHFGKKIELLDTEDIDD 109 (118)
Q Consensus 76 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (118)
+++|+.. .+....++++..++.+...+|......
T Consensus 550 ~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 592 (652)
T PRK05298 550 VILYADKITDSMQKAIDETERRREIQIAYNEEHGITPKTIKKK 592 (652)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCChhHHHH
Confidence 9999984 466677888888899888888665433
No 49
>PRK02362 ski2-like helicase; Provisional
Probab=99.74 E-value=6e-18 Score=136.67 Aligned_cols=77 Identities=26% Similarity=0.361 Sum_probs=70.9
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEE----ec-----CCCCCCCCCCcchhhhhhcccccCC
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVIN----FD-----MPIDMNGQADCETYLHRIGRTGRFG 71 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~----~~-----~p~~~~~~~~~~~y~qr~GR~gR~~ 71 (118)
||+|++++|..+++.|++|.++|||||+++++|+|+|.+++||+ || .|. +..+|.||+|||||.|
T Consensus 310 Hagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~------s~~~y~Qm~GRAGR~g 383 (737)
T PRK02362 310 HAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPI------PVLEYHQMAGRAGRPG 383 (737)
T ss_pred cCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeC------CHHHHHHHhhcCCCCC
Confidence 99999999999999999999999999999999999999999997 76 355 8899999999999988
Q ss_pred C--ceEEEEEecCC
Q psy6850 72 K--CGIAINLVDEH 83 (118)
Q Consensus 72 ~--~g~~~~~~~~~ 83 (118)
. .|.+++++...
T Consensus 384 ~d~~G~~ii~~~~~ 397 (737)
T PRK02362 384 LDPYGEAVLLAKSY 397 (737)
T ss_pred CCCCceEEEEecCc
Confidence 6 49999998754
No 50
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.74 E-value=2.3e-18 Score=139.99 Aligned_cols=83 Identities=19% Similarity=0.344 Sum_probs=72.5
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCC--CCC----------CCcchhhhhhcccc
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDM--NGQ----------ADCETYLHRIGRTG 68 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~--~~~----------~~~~~y~qr~GR~g 68 (118)
||+|++++|.++++.|+.|+.+||||||++++|||+|+|++||++++|... +.+ -+..+|.||+||||
T Consensus 243 Hg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAG 322 (819)
T TIGR01970 243 YGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAG 322 (819)
T ss_pred cCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcC
Confidence 999999999999999999999999999999999999999999999998621 111 13456899999999
Q ss_pred cCCCceEEEEEecCCc
Q psy6850 69 RFGKCGIAINLVDEHS 84 (118)
Q Consensus 69 R~~~~g~~~~~~~~~~ 84 (118)
|. .+|.||.++++.+
T Consensus 323 R~-~~G~cyrL~t~~~ 337 (819)
T TIGR01970 323 RL-EPGVCYRLWSEEQ 337 (819)
T ss_pred CC-CCCEEEEeCCHHH
Confidence 99 7999999998554
No 51
>KOG0346|consensus
Probab=99.74 E-value=3.9e-18 Score=128.82 Aligned_cols=90 Identities=29% Similarity=0.462 Sum_probs=81.8
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcC-----------------------------------ccccccCcCCccEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTN-----------------------------------VLARGIDVEQVTIVINF 45 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~-----------------------------------~~~~Gidi~~v~~VI~~ 45 (118)
.|+||...|..++++|..|-.+++|||| -.+||||+.+|..|+||
T Consensus 299 NseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNF 378 (569)
T KOG0346|consen 299 NSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNF 378 (569)
T ss_pred cccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeec
Confidence 3789999999999999999999999999 35789999999999999
Q ss_pred cCCCCCCCCCCcchhhhhhcccccCCCceEEEEEecCCcHHHHHHHHHHhC
Q psy6850 46 DMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLVDEHSVGVLKDIEKHFG 96 (118)
Q Consensus 46 ~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~~~~~~~~~~~~~~~~~ 96 (118)
|+|. +...|+||+||++|++++|.+++|+.+.+..-...++..+.
T Consensus 379 D~P~------t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~le~~~~ 423 (569)
T KOG0346|consen 379 DFPE------TVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESLESILK 423 (569)
T ss_pred CCCC------chHHHHHhccccccCCCCCceEEEecchHHhhhhHHHHHHh
Confidence 9999 99999999999999999999999999988876666665543
No 52
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.74 E-value=6.7e-18 Score=100.38 Aligned_cols=65 Identities=38% Similarity=0.655 Sum_probs=63.2
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCC
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFG 71 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~ 71 (118)
||++++++|..+++.|+.+...+|++|++++.|+|+|.++.||.++.|+ +...|.|++||++|.|
T Consensus 18 ~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~------~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 18 HGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPW------SPASYIQRIGRAGRAG 82 (82)
T ss_pred ECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCC------CHHHHHHhhcccccCC
Confidence 8999999999999999999999999999999999999999999999999 9999999999999975
No 53
>KOG4284|consensus
Probab=99.73 E-value=6.3e-18 Score=132.53 Aligned_cols=84 Identities=35% Similarity=0.679 Sum_probs=77.0
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEec
Q psy6850 2 GKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLVD 81 (118)
Q Consensus 2 g~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~~ 81 (118)
|.|+|.+|..+++++|.-.++|||+||+.+||||-|+|++|||.|.|. +-.+|.||+|||||+|..|.+++|+.
T Consensus 304 gaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~------d~eTY~HRIGRAgRFG~~G~aVT~~~ 377 (980)
T KOG4284|consen 304 GAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPA------DEETYFHRIGRAGRFGAHGAAVTLLE 377 (980)
T ss_pred cccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCc------chHHHHHHhhhcccccccceeEEEec
Confidence 789999999999999999999999999999999999999999999999 99999999999999999999999998
Q ss_pred CCcH-HHHHHH
Q psy6850 82 EHSV-GVLKDI 91 (118)
Q Consensus 82 ~~~~-~~~~~~ 91 (118)
.... ..+..+
T Consensus 378 ~~~e~~~f~~m 388 (980)
T KOG4284|consen 378 DERELKGFTAM 388 (980)
T ss_pred cchhhhhhHHH
Confidence 5543 333333
No 54
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.73 E-value=1.6e-17 Score=132.55 Aligned_cols=79 Identities=20% Similarity=0.272 Sum_probs=73.7
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEec-----CCCCCCCCCCcchhhhhhcccccCCCceE
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFD-----MPIDMNGQADCETYLHRIGRTGRFGKCGI 75 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~-----~p~~~~~~~~~~~y~qr~GR~gR~~~~g~ 75 (118)
||++++.+|.+++++|+.|++.|||||+++++|+|+|++++||++| .|. +..+|+||+||+||. ..|.
T Consensus 473 h~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi~DadifG~p~------~~~~~iqriGRagR~-~~G~ 545 (655)
T TIGR00631 473 HSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLR------SERSLIQTIGRAARN-VNGK 545 (655)
T ss_pred eCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEEeCcccccCCC------CHHHHHHHhcCCCCC-CCCE
Confidence 8999999999999999999999999999999999999999999988 788 899999999999998 6899
Q ss_pred EEEEecCCcHH
Q psy6850 76 AINLVDEHSVG 86 (118)
Q Consensus 76 ~~~~~~~~~~~ 86 (118)
+++|+...+..
T Consensus 546 vi~~~~~~~~~ 556 (655)
T TIGR00631 546 VIMYADKITDS 556 (655)
T ss_pred EEEEEcCCCHH
Confidence 99999865543
No 55
>KOG0349|consensus
Probab=99.72 E-value=1.6e-17 Score=125.84 Aligned_cols=100 Identities=35% Similarity=0.595 Sum_probs=90.2
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+..|.||.+.++.|+.+++++|||||+++||+||..+.++||..+|. +...|+||+||.||+.+-|.+|+++
T Consensus 539 hgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd------~k~nyvhrigrvgraermglaislv 612 (725)
T KOG0349|consen 539 HGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPD------DKTNYVHRIGRVGRAERMGLAISLV 612 (725)
T ss_pred ecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCc------ccchhhhhhhccchhhhcceeEEEe
Confidence 8999999999999999999999999999999999999999999999999 9999999999999999889999887
Q ss_pred cC--------------------------------CcHHHHHHHHHHhCCCceecCCCC
Q psy6850 81 DE--------------------------------HSVGVLKDIEKHFGKKIELLDTED 106 (118)
Q Consensus 81 ~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 106 (118)
.. .+...+.++|+++++.|+.++...
T Consensus 613 at~~ekvwyh~c~srgr~c~nt~l~e~~gc~iwyne~~llaeve~hln~ti~qv~~~~ 670 (725)
T KOG0349|consen 613 ATVPEKVWYHWCKSRGRSCNNTNLTEVRGCCIWYNEPNLLAEVEDHLNITIQQVDKTM 670 (725)
T ss_pred eccchheeehhhhccCCcccCCccccccceEEEeCchhHHHHHHHhhcceeeeeCCCC
Confidence 52 234567889999999888877543
No 56
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.72 E-value=1.8e-17 Score=132.49 Aligned_cols=89 Identities=25% Similarity=0.355 Sum_probs=71.6
Q ss_pred CCCCCHHHHHHHHHHH-hcCCCcEEEEcCccccccCcCCccEEEEec---CCCCCCC---CCCcchhhhhhcccccCCCc
Q psy6850 1 MGKGPNTSSSSSLNSF-TSCKEKVLITTNVLARGIDVEQVTIVINFD---MPIDMNG---QADCETYLHRIGRTGRFGKC 73 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F-~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~---~p~~~~~---~~~~~~y~qr~GR~gR~~~~ 73 (118)
||+|++. ++++++| +.|+.+||||||++++|+|+|+|++||++| .|....+ --+.++|.||+|||||. ++
T Consensus 428 HG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~ 504 (675)
T PHA02653 428 HGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SP 504 (675)
T ss_pred cCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CC
Confidence 9999985 5777888 789999999999999999999999999999 4421111 11678999999999999 79
Q ss_pred eEEEEEecCCcHHHHHHHH
Q psy6850 74 GIAINLVDEHSVGVLKDIE 92 (118)
Q Consensus 74 g~~~~~~~~~~~~~~~~~~ 92 (118)
|.|+.|+++.+...+.++.
T Consensus 505 G~c~rLyt~~~~~pI~ri~ 523 (675)
T PHA02653 505 GTYVYFYDLDLLKPIKRID 523 (675)
T ss_pred CeEEEEECHHHhHHHHHHh
Confidence 9999999866554444443
No 57
>KOG0351|consensus
Probab=99.71 E-value=2.1e-17 Score=135.25 Aligned_cols=88 Identities=24% Similarity=0.367 Sum_probs=83.1
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
|++|++.+|..+..+|..++++|+|||=++++|||.|+|++||+|.+|. +.+.|+|-+|||||.|....|++|+
T Consensus 516 HAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPk------s~E~YYQE~GRAGRDG~~s~C~l~y 589 (941)
T KOG0351|consen 516 HAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPK------SFEGYYQEAGRAGRDGLPSSCVLLY 589 (941)
T ss_pred hcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCch------hHHHHHHhccccCcCCCcceeEEec
Confidence 9999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCcHHHHHHHHHH
Q psy6850 81 DEHSVGVLKDIEKH 94 (118)
Q Consensus 81 ~~~~~~~~~~~~~~ 94 (118)
...+...++.+...
T Consensus 590 ~~~D~~~l~~ll~s 603 (941)
T KOG0351|consen 590 GYADISELRRLLTS 603 (941)
T ss_pred chhHHHHHHHHHHc
Confidence 98877766666554
No 58
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.71 E-value=8.4e-18 Score=136.77 Aligned_cols=83 Identities=18% Similarity=0.348 Sum_probs=71.9
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCC--CCC----------CCcchhhhhhcccc
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDM--NGQ----------ADCETYLHRIGRTG 68 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~--~~~----------~~~~~y~qr~GR~g 68 (118)
||+|++++|.++++.|+.|+.+||||||++++|+|+|+|++||++++|... +.. -+..+|.||+||+|
T Consensus 246 hg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaG 325 (812)
T PRK11664 246 YGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAG 325 (812)
T ss_pred eCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccC
Confidence 999999999999999999999999999999999999999999998887521 000 13358999999999
Q ss_pred cCCCceEEEEEecCCc
Q psy6850 69 RFGKCGIAINLVDEHS 84 (118)
Q Consensus 69 R~~~~g~~~~~~~~~~ 84 (118)
|. .+|.||.++++.+
T Consensus 326 R~-~~G~cyrL~t~~~ 340 (812)
T PRK11664 326 RL-EPGICLHLYSKEQ 340 (812)
T ss_pred CC-CCcEEEEecCHHH
Confidence 98 6999999998543
No 59
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.71 E-value=3.5e-17 Score=105.15 Aligned_cols=73 Identities=44% Similarity=0.750 Sum_probs=69.5
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEE
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINL 79 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~ 79 (118)
||++++.+|..+++.|+.+...+|++|.++++|+|+|.++.||.++.|+ +...|.|++||++|.|+.|.++++
T Consensus 59 ~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~~~~~~------~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 59 HGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVINYDLPW------SPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred ECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCEEEEeCCCC------CHHHheecccccccCCCCceEEeC
Confidence 7999999999999999999999999999999999999999999999999 999999999999999988877653
No 60
>PRK00254 ski2-like helicase; Provisional
Probab=99.68 E-value=8.8e-17 Score=129.69 Aligned_cols=79 Identities=22% Similarity=0.242 Sum_probs=69.4
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEE-------ecCCCCCCCCCCcchhhhhhcccccCC--
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVIN-------FDMPIDMNGQADCETYLHRIGRTGRFG-- 71 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~-------~~~p~~~~~~~~~~~y~qr~GR~gR~~-- 71 (118)
||+|++++|..+.+.|++|.++|||||+++++|+|+|.+++||. ++.|. .+..+|.||+|||||.|
T Consensus 302 Hagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~-----~~~~~~~Qm~GRAGR~~~d 376 (720)
T PRK00254 302 HAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWED-----IPVLEIQQMMGRAGRPKYD 376 (720)
T ss_pred CCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCcee-----CCHHHHHHhhhccCCCCcC
Confidence 99999999999999999999999999999999999999999994 44443 24578999999999975
Q ss_pred CceEEEEEecCCc
Q psy6850 72 KCGIAINLVDEHS 84 (118)
Q Consensus 72 ~~g~~~~~~~~~~ 84 (118)
..|.+++++...+
T Consensus 377 ~~G~~ii~~~~~~ 389 (720)
T PRK00254 377 EVGEAIIVATTEE 389 (720)
T ss_pred CCceEEEEecCcc
Confidence 5799999987654
No 61
>KOG0354|consensus
Probab=99.68 E-value=1.4e-16 Score=126.83 Aligned_cols=75 Identities=24% Similarity=0.389 Sum_probs=68.7
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEecC
Q psy6850 3 KGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLVDE 82 (118)
Q Consensus 3 ~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~~~ 82 (118)
+|++.++.+++++|++|++++||||+++++|+|++.|++||-||.-. ++...+||.|| ||. +.|.|+.+.+.
T Consensus 457 gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~s------npIrmIQrrGR-gRa-~ns~~vll~t~ 528 (746)
T KOG0354|consen 457 GMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSS------NPIRMVQRRGR-GRA-RNSKCVLLTTG 528 (746)
T ss_pred ccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCc------cHHHHHHHhcc-ccc-cCCeEEEEEcc
Confidence 79999999999999999999999999999999999999999999998 99999999999 997 56777777774
Q ss_pred CcH
Q psy6850 83 HSV 85 (118)
Q Consensus 83 ~~~ 85 (118)
.+.
T Consensus 529 ~~~ 531 (746)
T KOG0354|consen 529 SEV 531 (746)
T ss_pred hhH
Confidence 443
No 62
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.68 E-value=8e-17 Score=130.10 Aligned_cols=77 Identities=23% Similarity=0.239 Sum_probs=70.8
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCc---CCcc-----EEEEecCCCCCCCCCCcchhhhhhcccccCCC
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDV---EQVT-----IVINFDMPIDMNGQADCETYLHRIGRTGRFGK 72 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi---~~v~-----~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~ 72 (118)
||++++.++..+...++.| +|+|||++++||+|+ |+|. +||+|++|. +...|.||+||+||.|.
T Consensus 459 ~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~------s~r~y~qr~GRtGR~G~ 530 (790)
T PRK09200 459 NAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERME------SRRVDLQLRGRSGRQGD 530 (790)
T ss_pred cCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCC------CHHHHHHhhccccCCCC
Confidence 8899998888888888776 799999999999999 7998 999999999 99999999999999999
Q ss_pred ceEEEEEecCCcH
Q psy6850 73 CGIAINLVDEHSV 85 (118)
Q Consensus 73 ~g~~~~~~~~~~~ 85 (118)
+|.+++|++.+|.
T Consensus 531 ~G~s~~~is~eD~ 543 (790)
T PRK09200 531 PGSSQFFISLEDD 543 (790)
T ss_pred CeeEEEEEcchHH
Confidence 9999999986554
No 63
>PRK13766 Hef nuclease; Provisional
Probab=99.67 E-value=2.5e-16 Score=127.66 Aligned_cols=76 Identities=25% Similarity=0.353 Sum_probs=69.9
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
|++|++.+|.+++++|+.|+.++||+|+++++|+|+|++++||+||+|+ ++..|+||+||+||.+. |.++.++
T Consensus 404 ~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~------s~~r~iQR~GR~gR~~~-~~v~~l~ 476 (773)
T PRK13766 404 DKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVP------SEIRSIQRKGRTGRQEE-GRVVVLI 476 (773)
T ss_pred cCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCC------CHHHHHHHhcccCcCCC-CEEEEEE
Confidence 4569999999999999999999999999999999999999999999999 99999999999999864 7788887
Q ss_pred cCC
Q psy6850 81 DEH 83 (118)
Q Consensus 81 ~~~ 83 (118)
...
T Consensus 477 ~~~ 479 (773)
T PRK13766 477 AKG 479 (773)
T ss_pred eCC
Confidence 643
No 64
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.67 E-value=1.9e-16 Score=125.81 Aligned_cols=77 Identities=19% Similarity=0.236 Sum_probs=67.2
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcC---Ccc-----EEEEecCCCCCCCCCCcchhhhhhcccccCCC
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVE---QVT-----IVINFDMPIDMNGQADCETYLHRIGRTGRFGK 72 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~---~v~-----~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~ 72 (118)
||+++ +|++.+..|+.++..|+||||+++||+||+ +|. +||+|++|. +...|.||+||+||.|.
T Consensus 504 hg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~------s~r~y~hr~GRTGRqG~ 575 (656)
T PRK12898 504 NAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHD------SARIDRQLAGRCGRQGD 575 (656)
T ss_pred eCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCC------CHHHHHHhcccccCCCC
Confidence 77755 556666677767778999999999999999 776 999999999 99999999999999999
Q ss_pred ceEEEEEecCCcH
Q psy6850 73 CGIAINLVDEHSV 85 (118)
Q Consensus 73 ~g~~~~~~~~~~~ 85 (118)
+|.+++|++.+|.
T Consensus 576 ~G~s~~~is~eD~ 588 (656)
T PRK12898 576 PGSYEAILSLEDD 588 (656)
T ss_pred CeEEEEEechhHH
Confidence 9999999997654
No 65
>KOG0337|consensus
Probab=99.66 E-value=6.5e-17 Score=121.65 Aligned_cols=97 Identities=29% Similarity=0.477 Sum_probs=92.0
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEec
Q psy6850 2 GKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLVD 81 (118)
Q Consensus 2 g~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~~ 81 (118)
|.|+++-|...+.+|+.++..+||.||+++||+|+|-.+.|||||+|. +...|+||+||+.|+|+.|++|+++.
T Consensus 293 sslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~------~~klFvhRVgr~aragrtg~aYs~V~ 366 (529)
T KOG0337|consen 293 SSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPP------DDKLFVHRVGRVARAGRTGRAYSLVA 366 (529)
T ss_pred cccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCC------CCceEEEEecchhhccccceEEEEEe
Confidence 789999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred CCcHHHHHHHHHHhCCCceecCC
Q psy6850 82 EHSVGVLKDIEKHFGKKIELLDT 104 (118)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~ 104 (118)
..+..++-.+...++.++.....
T Consensus 367 ~~~~~yl~DL~lflgr~~~~~~~ 389 (529)
T KOG0337|consen 367 STDDPYLLDLQLFLGRPLIFAIS 389 (529)
T ss_pred cccchhhhhhhhhcCCceeeccc
Confidence 99999999999999987766553
No 66
>KOG0352|consensus
Probab=99.66 E-value=7.9e-17 Score=121.81 Aligned_cols=87 Identities=17% Similarity=0.217 Sum_probs=82.1
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
|++|...||..+-++|.++++.|++||..+++|+|-|+|++||++++|. +...|.|..|||||.|...+|-.++
T Consensus 286 HAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~q------n~AgYYQESGRAGRDGk~SyCRLYY 359 (641)
T KOG0352|consen 286 HAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQ------NLAGYYQESGRAGRDGKRSYCRLYY 359 (641)
T ss_pred hcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchh------hhHHHHHhccccccCCCccceeeee
Confidence 8999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCcHHHHHHHHH
Q psy6850 81 DEHSVGVLKDIEK 93 (118)
Q Consensus 81 ~~~~~~~~~~~~~ 93 (118)
.+.|...++.+..
T Consensus 360 sR~D~~~i~FLi~ 372 (641)
T KOG0352|consen 360 SRQDKNALNFLVS 372 (641)
T ss_pred cccchHHHHHHHh
Confidence 9988876655544
No 67
>PRK01172 ski2-like helicase; Provisional
Probab=99.65 E-value=3.6e-16 Score=125.28 Aligned_cols=82 Identities=26% Similarity=0.246 Sum_probs=67.2
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCC---CCCcchhhhhhcccccCCC--ceE
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNG---QADCETYLHRIGRTGRFGK--CGI 75 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~---~~~~~~y~qr~GR~gR~~~--~g~ 75 (118)
||+|++++|..+++.|++|.++|||||+++++|+|+|.. .||.+|.|.+... ..+..+|.||+|||||.|. .|.
T Consensus 292 hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~-~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~ 370 (674)
T PRK01172 292 HAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPAR-LVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGI 370 (674)
T ss_pred cCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcce-EEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcce
Confidence 999999999999999999999999999999999999986 4555555433221 1267889999999999884 677
Q ss_pred EEEEecCC
Q psy6850 76 AINLVDEH 83 (118)
Q Consensus 76 ~~~~~~~~ 83 (118)
+++++...
T Consensus 371 ~~i~~~~~ 378 (674)
T PRK01172 371 GYIYAASP 378 (674)
T ss_pred EEEEecCc
Confidence 88877644
No 68
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.64 E-value=4.9e-16 Score=115.86 Aligned_cols=73 Identities=18% Similarity=0.339 Sum_probs=62.7
Q ss_pred CCCCCHHHHHHH----HHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCc---
Q psy6850 1 MGKGPNTSSSSS----LNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKC--- 73 (118)
Q Consensus 1 Hg~l~~~~r~~~----~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~--- 73 (118)
||+|++.+|.++ +++|++|+.++||||+++++|+|++ +++||++..|. .+|+||+||+||.|+.
T Consensus 255 h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~~--------~~~iqr~GR~gR~g~~~~~ 325 (358)
T TIGR01587 255 HSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAPI--------DSLIQRLGRLHRYGRKNGE 325 (358)
T ss_pred ECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCCH--------HHHHHHhccccCCCCCCCC
Confidence 899999999764 8999999999999999999999995 78899887664 6899999999998753
Q ss_pred -eEEEEEecC
Q psy6850 74 -GIAINLVDE 82 (118)
Q Consensus 74 -g~~~~~~~~ 82 (118)
|.++.+...
T Consensus 326 ~~~~~v~~~~ 335 (358)
T TIGR01587 326 NFEVYIITIA 335 (358)
T ss_pred CCeEEEEeec
Confidence 367777653
No 69
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.64 E-value=1.2e-15 Score=122.43 Aligned_cols=81 Identities=19% Similarity=0.230 Sum_probs=71.0
Q ss_pred CCCCCHHHHHHHHHHHhcC-CCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceE----
Q psy6850 1 MGKGPNTSSSSSLNSFTSC-KEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGI---- 75 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g-~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~---- 75 (118)
||++++.+|.+++++|+.| ++++||+|+++.+|+|+|++++||+++.|. ++...|+||+||++|.+..|.
T Consensus 522 ~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~-----gS~~q~iQRlGRilR~~~~~~~~~~ 596 (732)
T TIGR00603 522 YGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSHY-----GSRRQEAQRLGRILRAKKGSDAEEY 596 (732)
T ss_pred ECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCCC-----CCHHHHHHHhcccccCCCCCccccc
Confidence 7999999999999999976 889999999999999999999999999873 289999999999999876544
Q ss_pred ---EEEEecCCcHH
Q psy6850 76 ---AINLVDEHSVG 86 (118)
Q Consensus 76 ---~~~~~~~~~~~ 86 (118)
.++|++++..+
T Consensus 597 ~A~fY~lVs~dT~E 610 (732)
T TIGR00603 597 NAFFYSLVSKDTQE 610 (732)
T ss_pred cceEEEEecCCchH
Confidence 48888865443
No 70
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.60 E-value=2.5e-15 Score=118.48 Aligned_cols=100 Identities=19% Similarity=0.204 Sum_probs=83.8
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||.|++.++.+++++|++|+++|||||.+.+.|+|+|+.++.|..|.-+ +..+.+.|-.||.||.+..++|+.++
T Consensus 514 HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AER-----FGLaQLHQLRGRVGRG~~qSyC~Ll~ 588 (677)
T COG1200 514 HGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAER-----FGLAQLHQLRGRVGRGDLQSYCVLLY 588 (677)
T ss_pred ecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhh-----hhHHHHHHhccccCCCCcceEEEEEe
Confidence 9999999999999999999999999999999999999999999888666 46789999999999999999999999
Q ss_pred cCCc-H---HHHHHHHHHh-CCCceecCCC
Q psy6850 81 DEHS-V---GVLKDIEKHF-GKKIELLDTE 105 (118)
Q Consensus 81 ~~~~-~---~~~~~~~~~~-~~~~~~~~~~ 105 (118)
.+.. . ..++-+.+-. |..|.+.+++
T Consensus 589 ~~~~~~~a~~RL~im~~t~DGF~IAE~DLk 618 (677)
T COG1200 589 KPPLSEVAKQRLKIMRETTDGFVIAEEDLK 618 (677)
T ss_pred CCCCChhHHHHHHHHHhcCCcceehhhhHh
Confidence 8665 2 3334343322 5666666544
No 71
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.60 E-value=1.4e-15 Score=122.29 Aligned_cols=77 Identities=18% Similarity=0.171 Sum_probs=68.0
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcC---------CccEEEEecCCCCCCCCCCcchhhhhhcccccCC
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVE---------QVTIVINFDMPIDMNGQADCETYLHRIGRTGRFG 71 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~---------~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~ 71 (118)
||++++.++..+.+.|+.| .|+||||+++||+|++ ++.+|++|++|. ... ..||+||+||.|
T Consensus 455 ~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps------~ri-d~qr~GRtGRqG 525 (762)
T TIGR03714 455 NAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMEN------SRV-DLQLRGRSGRQG 525 (762)
T ss_pred cCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCC------cHH-HHHhhhcccCCC
Confidence 8899999988887777777 7999999999999999 999999999995 544 499999999999
Q ss_pred CceEEEEEecCCcHH
Q psy6850 72 KCGIAINLVDEHSVG 86 (118)
Q Consensus 72 ~~g~~~~~~~~~~~~ 86 (118)
.+|.+++|++.+|.-
T Consensus 526 ~~G~s~~~is~eD~l 540 (762)
T TIGR03714 526 DPGSSQFFVSLEDDL 540 (762)
T ss_pred CceeEEEEEccchhh
Confidence 999999999966543
No 72
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.60 E-value=8.3e-16 Score=128.77 Aligned_cols=79 Identities=25% Similarity=0.392 Sum_probs=67.6
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecC---------------CCCCCCCCCcchhhhhhc
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDM---------------PIDMNGQADCETYLHRIG 65 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~---------------p~~~~~~~~~~~y~qr~G 65 (118)
||+|++++|.++++. .|..+||||||++++|||+|+|++||++++ |... -+..+|.||+|
T Consensus 320 hg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~---iSkasa~QRaG 394 (1294)
T PRK11131 320 YARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEP---ISQASANQRKG 394 (1294)
T ss_pred ccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeee---cCHhhHhhhcc
Confidence 899999999999986 478999999999999999999999999863 3200 14578999999
Q ss_pred ccccCCCceEEEEEecCCcH
Q psy6850 66 RTGRFGKCGIAINLVDEHSV 85 (118)
Q Consensus 66 R~gR~~~~g~~~~~~~~~~~ 85 (118)
||||. .+|.|+.++++.+.
T Consensus 395 RAGR~-~~G~c~rLyte~d~ 413 (1294)
T PRK11131 395 RCGRV-SEGICIRLYSEDDF 413 (1294)
T ss_pred ccCCC-CCcEEEEeCCHHHH
Confidence 99999 79999999986543
No 73
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.59 E-value=2.8e-15 Score=116.81 Aligned_cols=75 Identities=17% Similarity=0.209 Sum_probs=66.6
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEc-CccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCc---eEE
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITT-NVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKC---GIA 76 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T-~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~---g~~ 76 (118)
||+|++++|.++++.|+.|+..+|||| +++++|+|+|+++.||+++++. +...|+||+||++|.+.. ..+
T Consensus 375 ~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~------s~~~~~QriGR~~R~~~~K~~~~i 448 (501)
T PHA02558 375 SGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSK------SKIIVLQSIGRVLRKHGSKSIATV 448 (501)
T ss_pred eCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCc------chhhhhhhhhccccCCCCCceEEE
Confidence 899999999999999999999999998 8999999999999999999998 899999999999998653 234
Q ss_pred EEEec
Q psy6850 77 INLVD 81 (118)
Q Consensus 77 ~~~~~ 81 (118)
+-|+.
T Consensus 449 ~D~vD 453 (501)
T PHA02558 449 WDIID 453 (501)
T ss_pred EEeec
Confidence 44444
No 74
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.57 E-value=6.4e-15 Score=118.15 Aligned_cols=78 Identities=23% Similarity=0.198 Sum_probs=71.7
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCC-------ccEEEEecCCCCCCCCCCcchhhhhhcccccCCCc
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQ-------VTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKC 73 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~-------v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~ 73 (118)
||+ +.+|+..+.+|+.+...|+|||++++||+||+. ..+||+++.|. +...|.|++||+||.|.+
T Consensus 436 na~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~------s~ri~~q~~GRtGRqG~~ 507 (745)
T TIGR00963 436 NAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHE------SRRIDNQLRGRSGRQGDP 507 (745)
T ss_pred eCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCC------cHHHHHHHhccccCCCCC
Confidence 455 789999999999999999999999999999988 45999999999 999999999999999999
Q ss_pred eEEEEEecCCcHH
Q psy6850 74 GIAINLVDEHSVG 86 (118)
Q Consensus 74 g~~~~~~~~~~~~ 86 (118)
|.+..|++.+|.-
T Consensus 508 G~s~~~ls~eD~l 520 (745)
T TIGR00963 508 GSSRFFLSLEDNL 520 (745)
T ss_pred cceEEEEeccHHH
Confidence 9999999976553
No 75
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.55 E-value=7e-15 Score=114.71 Aligned_cols=81 Identities=25% Similarity=0.285 Sum_probs=69.7
Q ss_pred CCCCCHHHH--HHHHHHHhcCCCcEEEEcCccccccCcCCccEEE--Eec----CCCCCCCCCCcchhhhhhcccccCCC
Q psy6850 1 MGKGPNTSS--SSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVI--NFD----MPIDMNGQADCETYLHRIGRTGRFGK 72 (118)
Q Consensus 1 Hg~l~~~~r--~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI--~~~----~p~~~~~~~~~~~y~qr~GR~gR~~~ 72 (118)
|++++..++ ++++++|++|+.+|||+|+++++|+|+|+|++|+ ++| .|.+++.|.....|+|++||+||.+.
T Consensus 291 d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~ 370 (505)
T TIGR00595 291 DSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAED 370 (505)
T ss_pred ecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCC
Confidence 677776655 8999999999999999999999999999999885 555 47777777778899999999999999
Q ss_pred ceEEEEEec
Q psy6850 73 CGIAINLVD 81 (118)
Q Consensus 73 ~g~~~~~~~ 81 (118)
.|.+++...
T Consensus 371 ~g~viiqt~ 379 (505)
T TIGR00595 371 PGQVIIQTY 379 (505)
T ss_pred CCEEEEEeC
Confidence 999986654
No 76
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.54 E-value=5.8e-15 Score=123.91 Aligned_cols=82 Identities=21% Similarity=0.288 Sum_probs=67.1
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCC------------CCCCcchhhhhhcccc
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMN------------GQADCETYLHRIGRTG 68 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~------------~~~~~~~y~qr~GR~g 68 (118)
||+|++++|.++++.+ +..+|||||+++++|+++|+|++||+++++.... ..-+.++|.||+||+|
T Consensus 313 hg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAG 390 (1283)
T TIGR01967 313 YARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCG 390 (1283)
T ss_pred cCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhC
Confidence 8999999999997654 3479999999999999999999999998653110 0014579999999999
Q ss_pred cCCCceEEEEEecCCcH
Q psy6850 69 RFGKCGIAINLVDEHSV 85 (118)
Q Consensus 69 R~~~~g~~~~~~~~~~~ 85 (118)
|.+ +|.|+.+++..+.
T Consensus 391 R~~-~G~cyRLyte~~~ 406 (1283)
T TIGR01967 391 RVA-PGICIRLYSEEDF 406 (1283)
T ss_pred CCC-CceEEEecCHHHH
Confidence 997 9999999985443
No 77
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.54 E-value=9.9e-15 Score=118.52 Aligned_cols=71 Identities=23% Similarity=0.343 Sum_probs=60.1
Q ss_pred CCCCCHHHHH-----HHHHHHhc----CC-------CcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhh
Q psy6850 1 MGKGPNTSSS-----SSLNSFTS----CK-------EKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRI 64 (118)
Q Consensus 1 Hg~l~~~~r~-----~~~~~F~~----g~-------~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~ 64 (118)
||+|++.+|. +++++|+. |+ ..|||||+++++|+|++. ++||++..| .++|+||+
T Consensus 301 HG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--------~esyIQRi 371 (844)
T TIGR02621 301 TGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--------FESMQQRF 371 (844)
T ss_pred eCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--------HHHHHHHh
Confidence 9999999999 88999997 54 689999999999999986 888887655 37999999
Q ss_pred cccccCCCc-eEEEEEe
Q psy6850 65 GRTGRFGKC-GIAINLV 80 (118)
Q Consensus 65 GR~gR~~~~-g~~~~~~ 80 (118)
||+||.|+. +..++++
T Consensus 372 GRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 372 GRVNRFGELQACQIAVV 388 (844)
T ss_pred cccCCCCCCCCceEEEE
Confidence 999999874 3435554
No 78
>KOG0329|consensus
Probab=99.53 E-value=2.9e-15 Score=107.33 Aligned_cols=76 Identities=43% Similarity=0.853 Sum_probs=68.4
Q ss_pred EEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEecCC-cHHHHHHHHHHhCCCceec
Q psy6850 24 LITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLVDEH-SVGVLKDIEKHFGKKIELL 102 (118)
Q Consensus 24 Lv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 102 (118)
||||++++||+|+..|+.|+|||+|. ++.+|+||++||||.|..|.+++|++.. +...+..+.......|.++
T Consensus 302 ~vat~lfgrgmdiervNi~~NYdmp~------~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eL 375 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFNYDMPE------DSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKEL 375 (387)
T ss_pred hHHhhhhccccCcccceeeeccCCCC------CchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhc
Confidence 89999999999999999999999999 9999999999999999999999999844 5667788888777777777
Q ss_pred CCC
Q psy6850 103 DTE 105 (118)
Q Consensus 103 ~~~ 105 (118)
|.+
T Consensus 376 pde 378 (387)
T KOG0329|consen 376 PDE 378 (387)
T ss_pred Ccc
Confidence 654
No 79
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.52 E-value=4.7e-14 Score=114.20 Aligned_cols=97 Identities=22% Similarity=0.378 Sum_probs=77.3
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhccccc-CCCceEEEEE
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGR-FGKCGIAINL 79 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR-~~~~g~~~~~ 79 (118)
||.+|.++|..+.++|++|+++.+|||+.++.|||+.++++||+|+-|. +....+||+||+|+ .+.....+.+
T Consensus 285 HgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~------sV~r~lQRiGRsgHr~~~~Skg~ii 358 (814)
T COG1201 285 HGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPK------SVNRFLQRIGRAGHRLGEVSKGIII 358 (814)
T ss_pred cccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCcH------HHHHHhHhccccccccCCcccEEEE
Confidence 9999999999999999999999999999999999999999999999999 99999999999994 5554555555
Q ss_pred ecC--CcHHHHHHHHHHhCCCceecC
Q psy6850 80 VDE--HSVGVLKDIEKHFGKKIELLD 103 (118)
Q Consensus 80 ~~~--~~~~~~~~~~~~~~~~~~~~~ 103 (118)
... +-.....-........++.++
T Consensus 359 ~~~r~dllE~~vi~~~a~~g~le~~~ 384 (814)
T COG1201 359 AEDRDDLLECLVLADLALEGKLERIK 384 (814)
T ss_pred ecCHHHHHHHHHHHHHHHhCCcccCC
Confidence 443 122233334444455555444
No 80
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.52 E-value=3e-14 Score=114.53 Aligned_cols=84 Identities=24% Similarity=0.249 Sum_probs=70.2
Q ss_pred CCCCC--HHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEe--c----CCCCCCCCCCcchhhhhhcccccCCC
Q psy6850 1 MGKGP--NTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINF--D----MPIDMNGQADCETYLHRIGRTGRFGK 72 (118)
Q Consensus 1 Hg~l~--~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~--~----~p~~~~~~~~~~~y~qr~GR~gR~~~ 72 (118)
|++++ ++++++++++|++|+.+|||+|+++++|+|+|+|++|+.+ | .|.+.+.+.....|+|++||+||.+.
T Consensus 459 ~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~ 538 (679)
T PRK05580 459 DRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEK 538 (679)
T ss_pred eccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCC
Confidence 56665 4679999999999999999999999999999999998654 3 45555666667889999999999999
Q ss_pred ceEEEEEecCCc
Q psy6850 73 CGIAINLVDEHS 84 (118)
Q Consensus 73 ~g~~~~~~~~~~ 84 (118)
.|.++......+
T Consensus 539 ~g~viiqT~~p~ 550 (679)
T PRK05580 539 PGEVLIQTYHPE 550 (679)
T ss_pred CCEEEEEeCCCC
Confidence 999998765433
No 81
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.50 E-value=2.7e-14 Score=115.36 Aligned_cols=77 Identities=23% Similarity=0.206 Sum_probs=69.2
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCc---CCcc-----EEEEecCCCCCCCCCCcchhhhhhcccccCCC
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDV---EQVT-----IVINFDMPIDMNGQADCETYLHRIGRTGRFGK 72 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi---~~v~-----~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~ 72 (118)
||++...++.-+.+.++.|. |+|||++++||+|| ++|. +||+++.|. +...|.|+.||+||.|.
T Consensus 471 na~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pe------s~ri~~Ql~GRtGRqG~ 542 (796)
T PRK12906 471 NAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHE------SRRIDNQLRGRSGRQGD 542 (796)
T ss_pred cCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCC------cHHHHHHHhhhhccCCC
Confidence 67888777777777777777 99999999999999 4899 999999999 99999999999999999
Q ss_pred ceEEEEEecCCcH
Q psy6850 73 CGIAINLVDEHSV 85 (118)
Q Consensus 73 ~g~~~~~~~~~~~ 85 (118)
+|.+..|++.+|.
T Consensus 543 ~G~s~~~~sleD~ 555 (796)
T PRK12906 543 PGSSRFYLSLEDD 555 (796)
T ss_pred CcceEEEEeccch
Confidence 9999999996654
No 82
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.41 E-value=1.8e-13 Score=112.06 Aligned_cols=76 Identities=21% Similarity=0.232 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEcCccccccCcC---Ccc-----EEEEecCCCCCCCCCCcchhhhhhcccccCCCceEE
Q psy6850 5 PNTSSSSSLNSFTSCKEKVLITTNVLARGIDVE---QVT-----IVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIA 76 (118)
Q Consensus 5 ~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~---~v~-----~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~ 76 (118)
.+.+|++.+..|+.+...|+|||++++||+||+ .|. +||+++.|. +...|.|++||+||.|.+|.+
T Consensus 631 kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhe------s~Rid~Ql~GRtGRqGdpGsS 704 (1025)
T PRK12900 631 KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHE------SRRIDRQLRGRAGRQGDPGES 704 (1025)
T ss_pred CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCc------hHHHHHHHhhhhhcCCCCcce
Confidence 578999999999999999999999999999999 564 348889998 999999999999999999999
Q ss_pred EEEecCCcHH
Q psy6850 77 INLVDEHSVG 86 (118)
Q Consensus 77 ~~~~~~~~~~ 86 (118)
++|++.+|.-
T Consensus 705 ~ffvSleD~L 714 (1025)
T PRK12900 705 VFYVSLEDEL 714 (1025)
T ss_pred EEEechhHHH
Confidence 9999966543
No 83
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.38 E-value=1.6e-12 Score=107.51 Aligned_cols=77 Identities=21% Similarity=0.226 Sum_probs=70.7
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||.|+..+-++++.+|-.|+.+|||||.+.+-|||+|+++.+|..+.-. +..+++.|-.||.||....++|+.++
T Consensus 836 HGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~-----fGLsQLyQLRGRVGRS~~~AYAYfl~ 910 (1139)
T COG1197 836 HGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADK-----FGLAQLYQLRGRVGRSNKQAYAYFLY 910 (1139)
T ss_pred ecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEecccc-----ccHHHHHHhccccCCccceEEEEEee
Confidence 9999999999999999999999999999999999999999988765443 36788999999999999999999998
Q ss_pred cC
Q psy6850 81 DE 82 (118)
Q Consensus 81 ~~ 82 (118)
.+
T Consensus 911 p~ 912 (1139)
T COG1197 911 PP 912 (1139)
T ss_pred cC
Confidence 74
No 84
>KOG0353|consensus
Probab=99.37 E-value=2.6e-13 Score=102.02 Aligned_cols=93 Identities=19% Similarity=0.234 Sum_probs=81.9
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhh------------------
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLH------------------ 62 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~q------------------ 62 (118)
|..|.|++|.-+-+.+.+|+++|+|||-++++|||-|+|++||+..+|. +.+.|.|
T Consensus 348 ha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~k------sienyyqasarillrmtkqknksdt 421 (695)
T KOG0353|consen 348 HANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPK------SIENYYQASARILLRMTKQKNKSDT 421 (695)
T ss_pred ccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccch------hHHHHHHHHHHHHHHHhhhcccccC
Confidence 7889999999999999999999999999999999999999999999999 9999999
Q ss_pred -------------------------hhcccccCCCceEEEEEecCCcHHHHHHHHHHhCCCc
Q psy6850 63 -------------------------RIGRTGRFGKCGIAINLVDEHSVGVLKDIEKHFGKKI 99 (118)
Q Consensus 63 -------------------------r~GR~gR~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (118)
..||+||.+.+..|+.++.-.+......+..+.+..+
T Consensus 422 ggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~difk~ssmv~~e~~g~ 483 (695)
T KOG0353|consen 422 GGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADIFKISSMVQMENTGI 483 (695)
T ss_pred CCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHHHhHHHHHHHHhhhH
Confidence 6799999999999999998767665555554444433
No 85
>KOG0953|consensus
Probab=99.37 E-value=1.5e-12 Score=101.09 Aligned_cols=112 Identities=19% Similarity=0.266 Sum_probs=84.1
Q ss_pred CCCCCHHHHHHHHHHHhc--CCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCC---CcchhhhhhcccccCCC---
Q psy6850 1 MGKGPNTSSSSSLNSFTS--CKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQA---DCETYLHRIGRTGRFGK--- 72 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~--g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~---~~~~y~qr~GR~gR~~~--- 72 (118)
.|+|||+.|.+....|.+ ++.+||||||++++|+|+ +++.||.|++-.+.+.+. +..+..|-+|||||.|.
T Consensus 388 YGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~ 466 (700)
T KOG0953|consen 388 YGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYP 466 (700)
T ss_pred ecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCc
Confidence 389999999999999998 899999999999999998 899999998764333222 56778899999999875
Q ss_pred ceEEEEEecCCcHHHHHHHHHHhCCCceecC-CCChhhhhhcc
Q psy6850 73 CGIAINLVDEHSVGVLKDIEKHFGKKIELLD-TEDIDDEGNFR 114 (118)
Q Consensus 73 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 114 (118)
.|.+.+|.. ++...++++.+..-.++.... .|..++++.|+
T Consensus 467 ~G~vTtl~~-eDL~~L~~~l~~p~epi~~agl~pt~eqie~fa 508 (700)
T KOG0953|consen 467 QGEVTTLHS-EDLKLLKRILKRPVEPIKNAGLWPTDEQIELFA 508 (700)
T ss_pred CceEEEeeH-hhHHHHHHHHhCCchHHHhccCCccHHHHHHHH
Confidence 688877743 455555555444444444455 35667777654
No 86
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.36 E-value=1.9e-12 Score=105.11 Aligned_cols=80 Identities=29% Similarity=0.338 Sum_probs=67.3
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEE----ecCCCCCCCCCCcchhhhhhcccccCCC--ce
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVIN----FDMPIDMNGQADCETYLHRIGRTGRFGK--CG 74 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~----~~~p~~~~~~~~~~~y~qr~GR~gR~~~--~g 74 (118)
|++|+.++|.-+.+.|+.|+++|||||+.+++|+|+|.-.+||- |+. ..+..+-+.-+|.|+.|||||.|- .|
T Consensus 321 hAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~-~~g~~~i~~~dv~QM~GRAGRPg~d~~G 399 (766)
T COG1204 321 HAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDP-KGGIVDIPVLDVLQMAGRAGRPGYDDYG 399 (766)
T ss_pred ccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcC-CCCeEECchhhHhhccCcCCCCCcCCCC
Confidence 89999999999999999999999999999999999999877763 552 222233378999999999999874 67
Q ss_pred EEEEEec
Q psy6850 75 IAINLVD 81 (118)
Q Consensus 75 ~~~~~~~ 81 (118)
.++++..
T Consensus 400 ~~~i~~~ 406 (766)
T COG1204 400 EAIILAT 406 (766)
T ss_pred cEEEEec
Confidence 7877774
No 87
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.28 E-value=3.6e-12 Score=95.72 Aligned_cols=53 Identities=25% Similarity=0.511 Sum_probs=46.1
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccc
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTG 68 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~g 68 (118)
||.+++.+|.++ ++..|||||+++++|+|+|.+ .|| ++ |. +...|+||+||+|
T Consensus 305 ~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~------~~~~yiqR~GR~g 357 (357)
T TIGR03158 305 TGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-AR------DAAAFWQRLGRLG 357 (357)
T ss_pred ecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CC------CHHHHhhhcccCC
Confidence 799999998764 478999999999999999987 555 55 77 8999999999987
No 88
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.22 E-value=3.3e-11 Score=101.64 Aligned_cols=46 Identities=24% Similarity=0.395 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEE----cCccccccCcCC-ccEEEEecCCCC
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLIT----TNVLARGIDVEQ-VTIVINFDMPID 50 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~----T~~~~~Gidi~~-v~~VI~~~~p~~ 50 (118)
||+|+ ++++++|++|+++|||| ||+++||||+|+ |++|||||+|.+
T Consensus 360 hg~~~----~~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 360 HATKP----KEDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKF 410 (1171)
T ss_pred eCCCC----HHHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCCE
Confidence 89987 37899999999999999 599999999999 899999999964
No 89
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.19 E-value=6.8e-11 Score=91.15 Aligned_cols=63 Identities=27% Similarity=0.455 Sum_probs=60.3
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccC
Q psy6850 2 GKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRF 70 (118)
Q Consensus 2 g~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~ 70 (118)
|+.++.+|.+++++|+.|++++||++.++..|+|+|+++++|...... ++..|.||+||.-|.
T Consensus 314 ~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~------S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 314 GETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTG------SRRLFIQRLGRGLRP 376 (442)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCC------cHHHHHHHhhhhccC
Confidence 678999999999999999999999999999999999999999999887 999999999999993
No 90
>PRK14701 reverse gyrase; Provisional
Probab=99.18 E-value=1.4e-11 Score=106.09 Aligned_cols=78 Identities=17% Similarity=0.154 Sum_probs=60.9
Q ss_pred HHHHHHHHHhcCCCcEEEEc----CccccccCcCC-ccEEEEecCCCCCCCCCCcchhhhhh-------------ccccc
Q psy6850 8 SSSSSLNSFTSCKEKVLITT----NVLARGIDVEQ-VTIVINFDMPIDMNGQADCETYLHRI-------------GRTGR 69 (118)
Q Consensus 8 ~r~~~~~~F~~g~~~iLv~T----~~~~~Gidi~~-v~~VI~~~~p~~~~~~~~~~~y~qr~-------------GR~gR 69 (118)
.|.+++++|++|+++||||| ++++||||+|+ |++|||||+|.+. ++...|.|.. ||+||
T Consensus 366 ~R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~---~~~e~~~~~~~~~~~~~~~~~~~~~a~~ 442 (1638)
T PRK14701 366 KNKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFR---FRVDLEDPTIYRILGLLSEILKIEEELK 442 (1638)
T ss_pred hHHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCC---cchhhcccchhhhhcchHHHHHhhhhcc
Confidence 38999999999999999999 59999999998 9999999999744 2445555544 99999
Q ss_pred CCCceEEEEEecCCcHHHH
Q psy6850 70 FGKCGIAINLVDEHSVGVL 88 (118)
Q Consensus 70 ~~~~g~~~~~~~~~~~~~~ 88 (118)
.|.++.++..+...+...+
T Consensus 443 ~g~~~~~~~~~~~~~~~~~ 461 (1638)
T PRK14701 443 EGIPIEGVLDVFPEDVEFL 461 (1638)
T ss_pred cCCcchhHHHhHHHHHHHH
Confidence 9887666644444444333
No 91
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.13 E-value=1.3e-10 Score=96.82 Aligned_cols=77 Identities=22% Similarity=0.284 Sum_probs=67.2
Q ss_pred CCCCCHHHHHHHHHHHhcC---CCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceE--
Q psy6850 1 MGKGPNTSSSSSLNSFTSC---KEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGI-- 75 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g---~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~-- 75 (118)
||+++..+|.+++++|... ..-+|++|.+.+.|||+..++.||+||+|| +|..+.|++||+.|.|+...
T Consensus 518 dGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dW------NP~~d~QAidRaHRIGQkk~V~ 591 (1033)
T PLN03142 518 DGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDW------NPQVDLQAQDRAHRIGQKKEVQ 591 (1033)
T ss_pred CCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCC------ChHHHHHHHHHhhhcCCCceEE
Confidence 7999999999999999764 345789999999999999999999999999 99999999999999997543
Q ss_pred EEEEecCC
Q psy6850 76 AINLVDEH 83 (118)
Q Consensus 76 ~~~~~~~~ 83 (118)
++-|+...
T Consensus 592 VyRLIt~g 599 (1033)
T PLN03142 592 VFRFCTEY 599 (1033)
T ss_pred EEEEEeCC
Confidence 55555544
No 92
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.12 E-value=4e-11 Score=93.90 Aligned_cols=78 Identities=21% Similarity=0.310 Sum_probs=67.3
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEE---ecCCCCCCCCCCcchhhhhhcccccCCC--ceE
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVIN---FDMPIDMNGQADCETYLHRIGRTGRFGK--CGI 75 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~---~~~p~~~~~~~~~~~y~qr~GR~gR~~~--~g~ 75 (118)
|++||..+|..+...|.++++.++|+|-+++-|+|+|.-++|.. .+.-| .++..|.|++|||||.+. .|.
T Consensus 471 HaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~W-----Ls~~EF~QM~GRAGRp~yHdrGk 545 (830)
T COG1202 471 HAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIEW-----LSVREFQQMLGRAGRPDYHDRGK 545 (830)
T ss_pred cCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHccccc-----CCHHHHHHHhcccCCCCcccCce
Confidence 99999999999999999999999999999999999998765532 23333 378899999999999874 799
Q ss_pred EEEEecCC
Q psy6850 76 AINLVDEH 83 (118)
Q Consensus 76 ~~~~~~~~ 83 (118)
++.++.+.
T Consensus 546 Vyllvepg 553 (830)
T COG1202 546 VYLLVEPG 553 (830)
T ss_pred EEEEecCC
Confidence 99998743
No 93
>KOG0950|consensus
Probab=99.12 E-value=1.5e-10 Score=94.27 Aligned_cols=90 Identities=19% Similarity=0.248 Sum_probs=75.5
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCC--ceEEEE
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGK--CGIAIN 78 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~--~g~~~~ 78 (118)
|++++.++|+-+...|+.|-+.|++||+.++.|+|+|..+++|-. |.....-.+...|.||+|||||.|- .|.++.
T Consensus 529 haGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIira--P~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiL 606 (1008)
T KOG0950|consen 529 HAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRA--PYVGREFLTRLEYKQMVGRAGRTGIDTLGDSIL 606 (1008)
T ss_pred ccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeC--CccccchhhhhhHHhhhhhhhhcccccCcceEE
Confidence 899999999999999999999999999999999999999988764 2222222377899999999999974 688999
Q ss_pred EecCCcHHHHHHHH
Q psy6850 79 LVDEHSVGVLKDIE 92 (118)
Q Consensus 79 ~~~~~~~~~~~~~~ 92 (118)
.+...+...+.++.
T Consensus 607 I~k~~e~~~~~~lv 620 (1008)
T KOG0950|consen 607 IIKSSEKKRVRELV 620 (1008)
T ss_pred EeeccchhHHHHHH
Confidence 99988876665443
No 94
>KOG4150|consensus
Probab=99.12 E-value=1.5e-10 Score=90.84 Aligned_cols=99 Identities=22% Similarity=0.262 Sum_probs=85.5
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEec
Q psy6850 2 GKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLVD 81 (118)
Q Consensus 2 g~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~~ 81 (118)
|+-+.++|.++..+.-.|++.-+|+|++++.|||+.+.+.|++.++|. +...+.|+.|||||..++..++..+.
T Consensus 565 GGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~------S~aNl~QQ~GRAGRRNk~SLavyva~ 638 (1034)
T KOG4150|consen 565 GGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFPG------SIANLWQQAGRAGRRNKPSLAVYVAF 638 (1034)
T ss_pred CccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccCch------hHHHHHHHhccccccCCCceEEEEEe
Confidence 788899999999999999999999999999999999999999999999 99999999999999888776655554
Q ss_pred --CCcHHHHHHHHHHhCCCceecCCCC
Q psy6850 82 --EHSVGVLKDIEKHFGKKIELLDTED 106 (118)
Q Consensus 82 --~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (118)
+-|..+++..+...+.+-.++.+..
T Consensus 639 ~~PVDQ~Y~~HP~~l~~~pN~EL~LD~ 665 (1034)
T KOG4150|consen 639 LGPVDQYYMSHPDKLFGSPNEELHLDS 665 (1034)
T ss_pred ccchhhHhhcCcHHHhCCCcceeEEec
Confidence 6678888887777776666655443
No 95
>PRK09401 reverse gyrase; Reviewed
Probab=99.09 E-value=6.9e-11 Score=99.70 Aligned_cols=64 Identities=19% Similarity=0.186 Sum_probs=53.2
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEE----cCccccccCcCC-ccEEEEecCCCCCCCCCCcchhhhhhccccc
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLIT----TNVLARGIDVEQ-VTIVINFDMPIDMNGQADCETYLHRIGRTGR 69 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~----T~~~~~Gidi~~-v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR 69 (118)
||+| .+.+++|++|+++|||| ||+++||||+|+ |++|||||+|.+.-.-.....|.||+||+..
T Consensus 362 hg~l-----~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 362 ISGF-----ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred eCcH-----HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 8888 33569999999999999 699999999999 8999999999644322246789999999853
No 96
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.08 E-value=1.9e-10 Score=94.61 Aligned_cols=91 Identities=21% Similarity=0.277 Sum_probs=77.1
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|+.++|.++..+|+.|++.++++|+++.-|+|+.+++.||.+..|. .+..++.||.||+||.++.+..+..+
T Consensus 345 ~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~-----~s~~~~~Q~~GRaGR~~~~~l~~~v~ 419 (851)
T COG1205 345 RAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPG-----VSVLSFRQRAGRAGRRGQESLVLVVL 419 (851)
T ss_pred cccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCC-----chHHHHHHhhhhccCCCCCceEEEEe
Confidence 6899999999999999999999999999999999999999999999995 14689999999999998777766666
Q ss_pred cC--CcHHHHHHHHHHhC
Q psy6850 81 DE--HSVGVLKDIEKHFG 96 (118)
Q Consensus 81 ~~--~~~~~~~~~~~~~~ 96 (118)
.. -+..+....+...+
T Consensus 420 ~~~~~d~yy~~~p~~~~~ 437 (851)
T COG1205 420 RSDPLDSYYLRHPEELLE 437 (851)
T ss_pred CCCccchhhhhCcHhhhh
Confidence 52 34455555555555
No 97
>PRK09694 helicase Cas3; Provisional
Probab=99.06 E-value=2.4e-10 Score=94.10 Aligned_cols=63 Identities=19% Similarity=0.398 Sum_probs=54.4
Q ss_pred CCCCCHHHH----HHHHHHH-hcCC---CcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCC
Q psy6850 1 MGKGPNTSS----SSSLNSF-TSCK---EKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGK 72 (118)
Q Consensus 1 Hg~l~~~~r----~~~~~~F-~~g~---~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~ 72 (118)
||.+++.+| .++++.| ++|+ ..|||||+++++|+|+ +++++|....|. +.|+||+||++|.++
T Consensus 594 Hsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaPi--------dsLiQRaGR~~R~~~ 664 (878)
T PRK09694 594 HARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCPV--------DLLFQRLGRLHRHHR 664 (878)
T ss_pred eCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCCH--------HHHHHHHhccCCCCC
Confidence 899999999 4678888 6676 4799999999999999 689999877674 699999999999865
No 98
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.06 E-value=3.5e-10 Score=91.30 Aligned_cols=79 Identities=24% Similarity=0.315 Sum_probs=69.0
Q ss_pred HHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEE------ecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEec
Q psy6850 8 SSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVIN------FDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLVD 81 (118)
Q Consensus 8 ~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~------~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~~ 81 (118)
.-+..+++|..|+.+|||.|.++++|.|+|++++|.. ...|.++++|.....|.|-.|||||.+.+|.+++...
T Consensus 522 ~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~ 601 (730)
T COG1198 522 ALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTY 601 (730)
T ss_pred hHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeC
Confidence 3467899999999999999999999999999998754 3378899999999999999999999999999998877
Q ss_pred CCcHH
Q psy6850 82 EHSVG 86 (118)
Q Consensus 82 ~~~~~ 86 (118)
..+-.
T Consensus 602 ~P~hp 606 (730)
T COG1198 602 NPDHP 606 (730)
T ss_pred CCCcH
Confidence 55533
No 99
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.02 E-value=9.1e-10 Score=85.68 Aligned_cols=74 Identities=22% Similarity=0.293 Sum_probs=68.0
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEec-----CCCCCCCCCCcchhhhhhcccccCCCceE
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFD-----MPIDMNGQADCETYLHRIGRTGRFGKCGI 75 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~-----~p~~~~~~~~~~~y~qr~GR~gR~~~~g~ 75 (118)
|++...-+|..++.+.|.|+.+|||.-+++-+|+|+|.|.+|..+| +.+ +..+++|-+|||.|. -.|.
T Consensus 477 HSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLR------se~SLIQtIGRAARN-~~Gk 549 (663)
T COG0556 477 HSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLR------SERSLIQTIGRAARN-VNGK 549 (663)
T ss_pred eccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCcccccc------ccchHHHHHHHHhhc-cCCe
Confidence 8999999999999999999999999999999999999999998766 455 889999999999996 4789
Q ss_pred EEEEec
Q psy6850 76 AINLVD 81 (118)
Q Consensus 76 ~~~~~~ 81 (118)
++.+..
T Consensus 550 vIlYAD 555 (663)
T COG0556 550 VILYAD 555 (663)
T ss_pred EEEEch
Confidence 999876
No 100
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=98.99 E-value=1.7e-09 Score=80.44 Aligned_cols=76 Identities=21% Similarity=0.316 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEE-EecCCCCCCCCCCcchhhhhhcccccCCC--ceEEEEEecCC
Q psy6850 7 TSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVI-NFDMPIDMNGQADCETYLHRIGRTGRFGK--CGIAINLVDEH 83 (118)
Q Consensus 7 ~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI-~~~~p~~~~~~~~~~~y~qr~GR~gR~~~--~g~~~~~~~~~ 83 (118)
..|.+.+++||+|++.+|++|.+++||+.+|+|++.+ .-.-+. ++.+.++|.+||+||.-. .|.++.|....
T Consensus 342 ~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~v-----fTesaLVQIaGRvGRs~~~PtGdv~FFH~G~ 416 (441)
T COG4098 342 QHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRV-----FTESALVQIAGRVGRSLERPTGDVLFFHYGK 416 (441)
T ss_pred ccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCccc-----ccHHHHHHHhhhccCCCcCCCCcEEEEeccc
Confidence 5688999999999999999999999999999999754 333332 377899999999999643 68888887655
Q ss_pred cHHH
Q psy6850 84 SVGV 87 (118)
Q Consensus 84 ~~~~ 87 (118)
...+
T Consensus 417 skaM 420 (441)
T COG4098 417 SKAM 420 (441)
T ss_pred hHHH
Confidence 5443
No 101
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=98.92 E-value=2.6e-09 Score=89.95 Aligned_cols=58 Identities=19% Similarity=0.343 Sum_probs=54.0
Q ss_pred HHHHHHHHHhcCCC-cEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCC
Q psy6850 8 SSSSSLNSFTSCKE-KVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFG 71 (118)
Q Consensus 8 ~r~~~~~~F~~g~~-~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~ 71 (118)
++.+++++|++++. +|+|+++++..|+|+|.|..||.+..+. +...|.|++||+.|..
T Consensus 743 ~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvk------S~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 743 KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVR------SRILYEQMLGRATRLC 801 (1123)
T ss_pred chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCC------CHHHHHHHHhhhccCC
Confidence 56789999999987 6999999999999999999999999999 9999999999999953
No 102
>KOG0947|consensus
Probab=98.92 E-value=3.4e-09 Score=86.80 Aligned_cols=82 Identities=22% Similarity=0.244 Sum_probs=66.0
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCC---CCCcchhhhhhcccccCCC--ceE
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNG---QADCETYLHRIGRTGRFGK--CGI 75 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~---~~~~~~y~qr~GR~gR~~~--~g~ 75 (118)
||++=|--++-+..-|..|-++||+||..+++|+|.|...+|+. .+-...++ +..+-.|.|++|||||.|- .|.
T Consensus 637 H~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~-Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGT 715 (1248)
T KOG0947|consen 637 HGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVFS-SLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGT 715 (1248)
T ss_pred cccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEee-ehhhccCcceeecCChhHHhhhccccccccCcCce
Confidence 89998988999999999999999999999999999999776654 22221221 1267899999999999884 798
Q ss_pred EEEEecCC
Q psy6850 76 AINLVDEH 83 (118)
Q Consensus 76 ~~~~~~~~ 83 (118)
+++++...
T Consensus 716 Vii~~~~~ 723 (1248)
T KOG0947|consen 716 VIIMCKDS 723 (1248)
T ss_pred EEEEecCC
Confidence 98887643
No 103
>KOG0923|consensus
Probab=98.91 E-value=1.3e-09 Score=86.64 Aligned_cols=80 Identities=19% Similarity=0.257 Sum_probs=66.3
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCC-------CCCCCC-----Ccchhhhhhcccc
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPI-------DMNGQA-----DCETYLHRIGRTG 68 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~-------~~~~~~-----~~~~y~qr~GR~g 68 (118)
|++||.+.+.++++--..|..+|++||++++..+.|++|.+||.-++-. -+.... +.++-.||+||||
T Consensus 513 YaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAG 592 (902)
T KOG0923|consen 513 YANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAG 592 (902)
T ss_pred cccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccC
Confidence 6899999999999999999999999999999999999999999744321 111000 5677789999999
Q ss_pred cCCCceEEEEEec
Q psy6850 69 RFGKCGIAINLVD 81 (118)
Q Consensus 69 R~~~~g~~~~~~~ 81 (118)
|.| +|.|+-+++
T Consensus 593 Rtg-PGKCfRLYt 604 (902)
T KOG0923|consen 593 RTG-PGKCFRLYT 604 (902)
T ss_pred CCC-CCceEEeec
Confidence 986 899999987
No 104
>KOG0952|consensus
Probab=98.90 E-value=5.5e-09 Score=86.15 Aligned_cols=85 Identities=20% Similarity=0.195 Sum_probs=67.5
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCC-----CCcchhhhhhcccccC--CCc
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQ-----ADCETYLHRIGRTGRF--GKC 73 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~-----~~~~~y~qr~GR~gR~--~~~ 73 (118)
|++|...+|....+.|..|.++||+||..+++|+|+|.- .||..+-+.+.+.+ ...-+.+|..|||||. +..
T Consensus 403 hAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~-aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~ 481 (1230)
T KOG0952|consen 403 HAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAY-AVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSS 481 (1230)
T ss_pred ccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcce-EEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCC
Confidence 899999999999999999999999999999999999984 45554444444333 3456679999999995 468
Q ss_pred eEEEEEecCCcHH
Q psy6850 74 GIAINLVDEHSVG 86 (118)
Q Consensus 74 g~~~~~~~~~~~~ 86 (118)
|.++++.+.+-..
T Consensus 482 G~giIiTt~dkl~ 494 (1230)
T KOG0952|consen 482 GEGIIITTRDKLD 494 (1230)
T ss_pred ceEEEEecccHHH
Confidence 9888887644433
No 105
>KOG0922|consensus
Probab=98.88 E-value=1.2e-09 Score=86.50 Aligned_cols=84 Identities=21% Similarity=0.318 Sum_probs=68.3
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecC-------CCCCCC-----CCCcchhhhhhcccc
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDM-------PIDMNG-----QADCETYLHRIGRTG 68 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~-------p~~~~~-----~~~~~~y~qr~GR~g 68 (118)
||.||.+++.++++.-..|..+++++|++++..+.||++.+||+-++ |..+.. --|..+-.||.||||
T Consensus 297 y~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAG 376 (674)
T KOG0922|consen 297 YGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAG 376 (674)
T ss_pred cccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCC
Confidence 79999999999999999999999999999999999999999997332 110100 005677789999999
Q ss_pred cCCCceEEEEEecCCcH
Q psy6850 69 RFGKCGIAINLVDEHSV 85 (118)
Q Consensus 69 R~~~~g~~~~~~~~~~~ 85 (118)
|. .+|.|+-++++.+.
T Consensus 377 Rt-~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 377 RT-GPGKCYRLYTESAY 392 (674)
T ss_pred CC-CCceEEEeeeHHHH
Confidence 97 48999999985544
No 106
>KOG0951|consensus
Probab=98.86 E-value=4.5e-09 Score=87.98 Aligned_cols=90 Identities=20% Similarity=0.275 Sum_probs=72.5
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEE----ecCCCCCCCCCCcchhhhhhcccccCCC--ce
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVIN----FDMPIDMNGQADCETYLHRIGRTGRFGK--CG 74 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~----~~~p~~~~~~~~~~~y~qr~GR~gR~~~--~g 74 (118)
|+||+..+|....+-|+.|.+++||+|-.++||+|+|.-.++|- ||.-...=.+.++.+.+||.|||||.+. .|
T Consensus 614 hAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~g 693 (1674)
T KOG0951|consen 614 HAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCG 693 (1674)
T ss_pred ccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCC
Confidence 89999999999999999999999999999999999999888874 7655444445589999999999999753 56
Q ss_pred EEEEEecCCcHHHHHH
Q psy6850 75 IAINLVDEHSVGVLKD 90 (118)
Q Consensus 75 ~~~~~~~~~~~~~~~~ 90 (118)
..++.-...+..++..
T Consensus 694 egiiit~~se~qyyls 709 (1674)
T KOG0951|consen 694 EGIIITDHSELQYYLS 709 (1674)
T ss_pred ceeeccCchHhhhhHH
Confidence 6666544444444333
No 107
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.85 E-value=1.8e-09 Score=88.32 Aligned_cols=82 Identities=21% Similarity=0.292 Sum_probs=66.7
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCC--CC----------CCCcchhhhhhcccc
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDM--NG----------QADCETYLHRIGRTG 68 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~--~~----------~~~~~~y~qr~GR~g 68 (118)
||.||.+++.++++--..|+.+|+++|++++.+|.||+|.+||.-++.... +. --+.++..||.||||
T Consensus 294 y~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAG 373 (845)
T COG1643 294 YGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAG 373 (845)
T ss_pred cccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccc
Confidence 799999999999999888988899999999999999999999974432210 00 005677789999999
Q ss_pred cCCCceEEEEEecCC
Q psy6850 69 RFGKCGIAINLVDEH 83 (118)
Q Consensus 69 R~~~~g~~~~~~~~~ 83 (118)
|- .+|+|+-+++++
T Consensus 374 R~-~pGicyRLyse~ 387 (845)
T COG1643 374 RT-GPGICYRLYSEE 387 (845)
T ss_pred cC-CCceEEEecCHH
Confidence 97 489999999853
No 108
>KOG0948|consensus
Probab=98.79 E-value=7.5e-09 Score=83.26 Aligned_cols=82 Identities=23% Similarity=0.255 Sum_probs=65.0
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCC---CcchhhhhhcccccCCC--ceE
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQA---DCETYLHRIGRTGRFGK--CGI 75 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~---~~~~y~qr~GR~gR~~~--~g~ 75 (118)
||+|=|=-++-+.=-|..|-+++|.||..++.|+|.|.-.+|.- ..-.+.+.++ +.-.|+|+.|||||.|. .|.
T Consensus 453 HsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT-~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGi 531 (1041)
T KOG0948|consen 453 HSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFT-AVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGI 531 (1041)
T ss_pred cccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEe-eccccCCcceeeecccceEEecccccccCCCCCce
Confidence 88888888888888999999999999999999999998765543 2221111111 56789999999999885 799
Q ss_pred EEEEecCC
Q psy6850 76 AINLVDEH 83 (118)
Q Consensus 76 ~~~~~~~~ 83 (118)
||+++...
T Consensus 532 vIlmiDek 539 (1041)
T KOG0948|consen 532 VILMIDEK 539 (1041)
T ss_pred EEEEecCc
Confidence 99999844
No 109
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=98.79 E-value=1.5e-08 Score=82.91 Aligned_cols=74 Identities=22% Similarity=0.186 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcCccccccCcCCc--------------------------------------cEEEEecC
Q psy6850 6 NTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQV--------------------------------------TIVINFDM 47 (118)
Q Consensus 6 ~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v--------------------------------------~~VI~~~~ 47 (118)
+.+|++.+.+|+.+...|+|||++++||+||+== -+||-...
T Consensus 464 q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTer 543 (830)
T PRK12904 464 NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTER 543 (830)
T ss_pred hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEeccc
Confidence 7899999999999999999999999999998621 16777778
Q ss_pred CCCCCCCCCcchhhhhhcccccCCCceEEEEEecCCcH
Q psy6850 48 PIDMNGQADCETYLHRIGRTGRFGKCGIAINLVDEHSV 85 (118)
Q Consensus 48 p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~~~~~~ 85 (118)
|. +..--.|-.||+||.|.+|.+-.|++-+|.
T Consensus 544 he------srRid~QlrGRagRQGdpGss~f~lSleD~ 575 (830)
T PRK12904 544 HE------SRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 575 (830)
T ss_pred Cc------hHHHHHHhhcccccCCCCCceeEEEEcCcH
Confidence 87 888888999999999999999999986654
No 110
>KOG0949|consensus
Probab=98.72 E-value=2.5e-08 Score=82.08 Aligned_cols=74 Identities=26% Similarity=0.253 Sum_probs=62.2
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEec-CCCCCCCCCCcchhhhhhcccccCCC--ceEEE
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFD-MPIDMNGQADCETYLHRIGRTGRFGK--CGIAI 77 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~-~p~~~~~~~~~~~y~qr~GR~gR~~~--~g~~~ 77 (118)
|++|....|..+.--||.|...||+||..++.|||.|-.++|.--| +-- ++-.|.|++|||||.|= .|.++
T Consensus 969 HaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDsLQL------~plny~QmaGRAGRRGFD~lGnV~ 1042 (1330)
T KOG0949|consen 969 HAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGDSLQL------DPLNYKQMAGRAGRRGFDTLGNVV 1042 (1330)
T ss_pred ccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEecccccc------CchhHHhhhccccccccccccceE
Confidence 8999999999999999999999999999999999998766554433 333 77899999999999873 57666
Q ss_pred EEe
Q psy6850 78 NLV 80 (118)
Q Consensus 78 ~~~ 80 (118)
.+-
T Consensus 1043 Fmg 1045 (1330)
T KOG0949|consen 1043 FMG 1045 (1330)
T ss_pred EEe
Confidence 553
No 111
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=98.72 E-value=5.1e-08 Score=80.13 Aligned_cols=77 Identities=19% Similarity=0.164 Sum_probs=66.5
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcC-C-------------------------------c-----cEEE
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVE-Q-------------------------------V-----TIVI 43 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~-~-------------------------------v-----~~VI 43 (118)
|+++++.++..+.+.|+.|. |+|||++++||+||. + | -+||
T Consensus 480 nak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VI 557 (908)
T PRK13107 480 NAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHIL 557 (908)
T ss_pred cCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEE
Confidence 78999999999999999999 999999999999984 1 1 1677
Q ss_pred EecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEecCCcH
Q psy6850 44 NFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLVDEHSV 85 (118)
Q Consensus 44 ~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~~~~~~ 85 (118)
-...+. +..-=.|-.||+||.|.+|.+-.|++-+|.
T Consensus 558 gTerhe------SrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 558 GTERHE------SRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred ecccCc------hHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 777777 777778999999999999999999986654
No 112
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=98.69 E-value=3.6e-08 Score=81.05 Aligned_cols=77 Identities=21% Similarity=0.135 Sum_probs=65.2
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcC-C--------------------------------c-----cEE
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVE-Q--------------------------------V-----TIV 42 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~-~--------------------------------v-----~~V 42 (118)
||++.+.++..+.+.|+.|. |+|||++++||+||. + | -+|
T Consensus 475 nak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~V 552 (896)
T PRK13104 475 NAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRI 552 (896)
T ss_pred cCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEE
Confidence 78999999999999999994 999999999999974 1 1 156
Q ss_pred EEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEecCCcH
Q psy6850 43 INFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLVDEHSV 85 (118)
Q Consensus 43 I~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~~~~~~ 85 (118)
|--..+. +..-=.|-.||+||.|.+|.+-.|++-+|.
T Consensus 553 IgTerhe------srRID~QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 553 IGSERHE------SRRIDNQLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred EeeccCc------hHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 6666676 777778999999999999999999986554
No 113
>KOG0924|consensus
Probab=98.63 E-value=3.2e-08 Score=79.20 Aligned_cols=74 Identities=23% Similarity=0.353 Sum_probs=63.8
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecC------------------CCCCCCCCCcchhhhh
Q psy6850 2 GKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDM------------------PIDMNGQADCETYLHR 63 (118)
Q Consensus 2 g~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~------------------p~~~~~~~~~~~y~qr 63 (118)
+.||..-+.+++++-..|..+++|||++++..+.+|++.+||..++ |. +...-.||
T Consensus 605 SQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pI------S~AnA~QR 678 (1042)
T KOG0924|consen 605 SQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPI------SQANADQR 678 (1042)
T ss_pred hhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEec------hhccchhh
Confidence 5788899999999999999999999999999999999999997543 33 55666799
Q ss_pred hcccccCCCceEEEEEecC
Q psy6850 64 IGRTGRFGKCGIAINLVDE 82 (118)
Q Consensus 64 ~GR~gR~~~~g~~~~~~~~ 82 (118)
.|||||.| +|.|+-+++.
T Consensus 679 aGRAGRt~-pG~cYRlYTe 696 (1042)
T KOG0924|consen 679 AGRAGRTG-PGTCYRLYTE 696 (1042)
T ss_pred ccccCCCC-Ccceeeehhh
Confidence 99999975 8999999974
No 114
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=98.62 E-value=8e-08 Score=79.95 Aligned_cols=82 Identities=21% Similarity=0.176 Sum_probs=65.9
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCC---CCCCCcchhhhhhcccccCCC--ceE
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDM---NGQADCETYLHRIGRTGRFGK--CGI 75 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~---~~~~~~~~y~qr~GR~gR~~~--~g~ 75 (118)
|++|=|..|..+..-|..|-++++++|.+++.|+|.|.-++|+- .+-.+. ....++..|.|+.|||||.|. .|.
T Consensus 451 H~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~-~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~ 529 (1041)
T COG4581 451 HAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFT-SLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGT 529 (1041)
T ss_pred ccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceeee-eeEEecCCceeecChhHHHHhhhhhccccccccce
Confidence 89999999999999999999999999999999999998776642 221111 112278899999999999885 688
Q ss_pred EEEEecCC
Q psy6850 76 AINLVDEH 83 (118)
Q Consensus 76 ~~~~~~~~ 83 (118)
+++...+.
T Consensus 530 vI~~~~~~ 537 (1041)
T COG4581 530 VIVIEPPF 537 (1041)
T ss_pred EEEecCCC
Confidence 88886543
No 115
>KOG0390|consensus
Probab=98.61 E-value=1.1e-07 Score=77.25 Aligned_cols=75 Identities=16% Similarity=0.203 Sum_probs=65.9
Q ss_pred CCCCCHHHHHHHHHHHhcCCCc---EEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEE
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEK---VLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAI 77 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~---iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~ 77 (118)
||.|+..+|+.+++.|.+.... +|..|.+.+.||++-+...||.||..| +|+.=.|.++|+-|.|+.-.|+
T Consensus 626 dG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dW------NPa~d~QAmaR~~RdGQKk~v~ 699 (776)
T KOG0390|consen 626 DGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDW------NPAVDQQAMARAWRDGQKKPVY 699 (776)
T ss_pred cCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCC------CchhHHHHHHHhccCCCcceEE
Confidence 7999999999999999986433 668888999999999999999999999 9999999999999999855544
Q ss_pred --EEec
Q psy6850 78 --NLVD 81 (118)
Q Consensus 78 --~~~~ 81 (118)
-|++
T Consensus 700 iYrLla 705 (776)
T KOG0390|consen 700 IYRLLA 705 (776)
T ss_pred EEEeec
Confidence 4455
No 116
>KOG0920|consensus
Probab=98.60 E-value=3.5e-08 Score=81.22 Aligned_cols=82 Identities=21% Similarity=0.339 Sum_probs=67.6
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEE--------ecCCCCCCC----CCCcchhhhhhcccc
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVIN--------FDMPIDMNG----QADCETYLHRIGRTG 68 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~--------~~~p~~~~~----~~~~~~y~qr~GR~g 68 (118)
|+.|+.+++..++..-..|..+|+++|++++-.|.|++|-+||+ ||.-..... =-+...-.||.||||
T Consensus 451 Hs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAG 530 (924)
T KOG0920|consen 451 HSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAG 530 (924)
T ss_pred cccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhccccc
Confidence 89999999999999999999999999999999999999999997 443321110 013566679999999
Q ss_pred cCCCceEEEEEecCC
Q psy6850 69 RFGKCGIAINLVDEH 83 (118)
Q Consensus 69 R~~~~g~~~~~~~~~ 83 (118)
|. .+|.|+.+++..
T Consensus 531 Rv-~~G~cy~L~~~~ 544 (924)
T KOG0920|consen 531 RV-RPGICYHLYTRS 544 (924)
T ss_pred Cc-cCCeeEEeechh
Confidence 97 689999999844
No 117
>KOG0926|consensus
Probab=98.59 E-value=3.1e-08 Score=80.29 Aligned_cols=78 Identities=15% Similarity=0.232 Sum_probs=62.2
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCC--CCCC----------CcchhhhhhcccccC
Q psy6850 3 KGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDM--NGQA----------DCETYLHRIGRTGRF 70 (118)
Q Consensus 3 ~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~--~~~~----------~~~~y~qr~GR~gR~ 70 (118)
=||.+++.++++.-..|..-++|+|++++..+.||++++||..+.-..+ +... +..+--||+|||||.
T Consensus 613 LLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRt 692 (1172)
T KOG0926|consen 613 LLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRT 692 (1172)
T ss_pred hcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCC
Confidence 4788999999999999999999999999999999999999985532211 0001 334456999999998
Q ss_pred CCceEEEEEec
Q psy6850 71 GKCGIAINLVD 81 (118)
Q Consensus 71 ~~~g~~~~~~~ 81 (118)
| +|+||-+|+
T Consensus 693 g-pGHcYRLYS 702 (1172)
T KOG0926|consen 693 G-PGHCYRLYS 702 (1172)
T ss_pred C-CCceeehhh
Confidence 5 899999986
No 118
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=98.43 E-value=3.8e-07 Score=74.44 Aligned_cols=73 Identities=18% Similarity=0.319 Sum_probs=59.4
Q ss_pred CCCCCHHHHHHHHHHHh----cCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCC--Cce
Q psy6850 1 MGKGPNTSSSSSLNSFT----SCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFG--KCG 74 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~----~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~--~~g 74 (118)
||.++..+|.+.++.++ .+...|+|||++++.|+|+. .+++|-= +. ...+.+||+||..|.| ..|
T Consensus 471 HSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mITe--~a------PidSLIQR~GRv~R~g~~~~~ 541 (733)
T COG1203 471 HSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLITE--LA------PIDSLIQRAGRVNRHGKKENG 541 (733)
T ss_pred ecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeeec--CC------CHHHHHHHHHHHhhcccccCC
Confidence 89999999998888665 46788999999999999994 6766542 22 5689999999999998 578
Q ss_pred EEEEEecC
Q psy6850 75 IAINLVDE 82 (118)
Q Consensus 75 ~~~~~~~~ 82 (118)
.++.+...
T Consensus 542 ~~~v~~~~ 549 (733)
T COG1203 542 KIYVYNDE 549 (733)
T ss_pred ceeEeecc
Confidence 88777663
No 119
>KOG0385|consensus
Probab=98.05 E-value=1.1e-05 Score=65.64 Aligned_cols=78 Identities=21% Similarity=0.336 Sum_probs=67.5
Q ss_pred CCCCHHHHHHHHHHHhcCC---CcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCc--eEE
Q psy6850 2 GKGPNTSSSSSLNSFTSCK---EKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKC--GIA 76 (118)
Q Consensus 2 g~l~~~~r~~~~~~F~~g~---~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~--g~~ 76 (118)
|..+.++|.+.++.|.... .=+|++|-+.+.|||+...+.||.||--| +|..=+|..-||.|-|+. =.+
T Consensus 519 GSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDW------NPQ~DLQAmDRaHRIGQ~K~V~V 592 (971)
T KOG0385|consen 519 GSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDW------NPQVDLQAMDRAHRIGQKKPVVV 592 (971)
T ss_pred CCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCC------CchhhhHHHHHHHhhCCcCceEE
Confidence 7889999999999999865 34789999999999999999999999999 999999999999999874 446
Q ss_pred EEEecCCcH
Q psy6850 77 INLVDEHSV 85 (118)
Q Consensus 77 ~~~~~~~~~ 85 (118)
+-|++....
T Consensus 593 ~RLitentV 601 (971)
T KOG0385|consen 593 YRLITENTV 601 (971)
T ss_pred EEEeccchH
Confidence 666765533
No 120
>KOG0392|consensus
Probab=97.93 E-value=2.3e-05 Score=66.35 Aligned_cols=76 Identities=20% Similarity=0.285 Sum_probs=66.3
Q ss_pred CCCCHHHHHHHHHHHhcC-CCcEE-EEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceE--EE
Q psy6850 2 GKGPNTSSSSSLNSFTSC-KEKVL-ITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGI--AI 77 (118)
Q Consensus 2 g~l~~~~r~~~~~~F~~g-~~~iL-v~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~--~~ 77 (118)
|..++.+|.++.++|.++ .+++| ++|-+.+.|+|+.+.+.||.++--| +|..=+|.+-||.|-|++-+ ++
T Consensus 1375 GSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDW------NPMrDLQAMDRAHRIGQKrvVNVy 1448 (1549)
T KOG0392|consen 1375 GSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDW------NPMRDLQAMDRAHRIGQKRVVNVY 1448 (1549)
T ss_pred CCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCC------CchhhHHHHHHHHhhcCceeeeee
Confidence 788999999999999999 78866 7888999999999999999999999 88888999999999997644 44
Q ss_pred EEecCC
Q psy6850 78 NLVDEH 83 (118)
Q Consensus 78 ~~~~~~ 83 (118)
-++++.
T Consensus 1449 RlItrG 1454 (1549)
T KOG0392|consen 1449 RLITRG 1454 (1549)
T ss_pred eehhcc
Confidence 555544
No 121
>KOG0387|consensus
Probab=97.91 E-value=2.1e-05 Score=64.11 Aligned_cols=77 Identities=22% Similarity=0.268 Sum_probs=65.2
Q ss_pred CCCCHHHHHHHHHHHhcCCCc--EEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCce--EEE
Q psy6850 2 GKGPNTSSSSSLNSFTSCKEK--VLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCG--IAI 77 (118)
Q Consensus 2 g~l~~~~r~~~~~~F~~g~~~--iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g--~~~ 77 (118)
|.-|...|..++++|.+++.- +|++|.+.+.|+|+...+.||.||+-| +|++=.|..-||-|.|+.- .+|
T Consensus 579 GtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdW------NPStD~QAreRawRiGQkkdV~VY 652 (923)
T KOG0387|consen 579 GTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDW------NPSTDNQARERAWRIGQKKDVVVY 652 (923)
T ss_pred CCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCC------CCccchHHHHHHHhhcCccceEEE
Confidence 556778999999999988653 679999999999999999999999999 9999999999999999743 345
Q ss_pred EEecCCc
Q psy6850 78 NLVDEHS 84 (118)
Q Consensus 78 ~~~~~~~ 84 (118)
-|++...
T Consensus 653 RL~t~gT 659 (923)
T KOG0387|consen 653 RLMTAGT 659 (923)
T ss_pred EEecCCc
Confidence 5566443
No 122
>KOG1123|consensus
Probab=97.82 E-value=7.2e-05 Score=58.79 Aligned_cols=82 Identities=18% Similarity=0.248 Sum_probs=66.5
Q ss_pred CCCCHHHHHHHHHHHhcC-CCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCC------ce
Q psy6850 2 GKGPNTSSSSSLNSFTSC-KEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGK------CG 74 (118)
Q Consensus 2 g~l~~~~r~~~~~~F~~g-~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~------~g 74 (118)
|.-|+.+|.+|++.|+-. +++-+..+.+....+|+|..+++|+..-.. ++...-.||.||.-|+.+ ..
T Consensus 570 G~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~-----GSRRQEAQRLGRILRAKk~~de~fna 644 (776)
T KOG1123|consen 570 GPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHG-----GSRRQEAQRLGRILRAKKRNDEEFNA 644 (776)
T ss_pred CCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEcccc-----cchHHHHHHHHHHHHHhhcCccccce
Confidence 778999999999999976 788888889999999999999999976543 377888999999888643 35
Q ss_pred EEEEEecCCcHHHH
Q psy6850 75 IAINLVDEHSVGVL 88 (118)
Q Consensus 75 ~~~~~~~~~~~~~~ 88 (118)
..+++++.+..+.+
T Consensus 645 fFYSLVS~DTqEM~ 658 (776)
T KOG1123|consen 645 FFYSLVSKDTQEMY 658 (776)
T ss_pred eeeeeeecchHHHH
Confidence 57777776655544
No 123
>KOG0384|consensus
Probab=97.73 E-value=9e-05 Score=62.79 Aligned_cols=76 Identities=21% Similarity=0.272 Sum_probs=67.3
Q ss_pred CCCCHHHHHHHHHHHhcC---CCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceE--E
Q psy6850 2 GKGPNTSSSSSLNSFTSC---KEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGI--A 76 (118)
Q Consensus 2 g~l~~~~r~~~~~~F~~g---~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~--~ 76 (118)
|.++.+-|+++++.|.+- ...+|++|-+.+.|||+...+.||.||--| +|..=+|...||-|-|+... +
T Consensus 731 GsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDW------NPQNDLQAqARaHRIGQkk~VnV 804 (1373)
T KOG0384|consen 731 GSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDW------NPQNDLQAQARAHRIGQKKHVNV 804 (1373)
T ss_pred CCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCC------CcchHHHHHHHHHhhcccceEEE
Confidence 778889999999999975 567999999999999999999999999999 99999999999999997544 5
Q ss_pred EEEecCC
Q psy6850 77 INLVDEH 83 (118)
Q Consensus 77 ~~~~~~~ 83 (118)
|-|++..
T Consensus 805 YRLVTk~ 811 (1373)
T KOG0384|consen 805 YRLVTKN 811 (1373)
T ss_pred EEEecCC
Confidence 6667744
No 124
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=97.73 E-value=6.8e-05 Score=61.44 Aligned_cols=78 Identities=19% Similarity=0.271 Sum_probs=65.9
Q ss_pred CCCCCHHHHHHHHHHHhcC--CCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceE--E
Q psy6850 1 MGKGPNTSSSSSLNSFTSC--KEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGI--A 76 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g--~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~--~ 76 (118)
+|.++.++|...+++|.++ ..-+++.|.+.+.|+|+...+.||.||..| ++....|...|+-|.|+... +
T Consensus 742 dG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~w------np~~~~Qa~dRa~RigQ~~~v~v 815 (866)
T COG0553 742 DGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWW------NPAVELQAIDRAHRIGQKRPVKV 815 (866)
T ss_pred eCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEecccc------ChHHHHHHHHHHHHhcCcceeEE
Confidence 5788899999999999997 445668888999999999999999999999 99999999999999887544 4
Q ss_pred EEEecCCc
Q psy6850 77 INLVDEHS 84 (118)
Q Consensus 77 ~~~~~~~~ 84 (118)
+-++....
T Consensus 816 ~r~i~~~t 823 (866)
T COG0553 816 YRLITRGT 823 (866)
T ss_pred EEeecCCc
Confidence 45555443
No 125
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.65 E-value=0.00024 Score=52.03 Aligned_cols=78 Identities=14% Similarity=0.292 Sum_probs=58.6
Q ss_pred HHHHHHhcCCCcEEEEcCccccccCcCC--------ccEEEEecCCCCCCCCCCcchhhhhhcccccCCC-ceEEEEEec
Q psy6850 11 SSLNSFTSCKEKVLITTNVLARGIDVEQ--------VTIVINFDMPIDMNGQADCETYLHRIGRTGRFGK-CGIAINLVD 81 (118)
Q Consensus 11 ~~~~~F~~g~~~iLv~T~~~~~Gidi~~--------v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~-~g~~~~~~~ 81 (118)
...+.|.+|+..|+|.|++.+.|+.+.. -++-|...+|| +....+|..||+-|.++ ....+.++.
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pw------sad~aiQ~~GR~hRsnQ~~~P~y~~l~ 125 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPW------SADKAIQQFGRTHRSNQVSAPEYRFLV 125 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCC------CHHHHHHHhccccccccccCCEEEEee
Confidence 4567999999999999999999998862 22446788999 99999999999999987 444555544
Q ss_pred ---CCcHHHHHHHHHH
Q psy6850 82 ---EHSVGVLKDIEKH 94 (118)
Q Consensus 82 ---~~~~~~~~~~~~~ 94 (118)
+.|..+...+.+.
T Consensus 126 t~~~gE~Rfas~va~r 141 (278)
T PF13871_consen 126 TDLPGERRFASTVARR 141 (278)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 3344544444444
No 126
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=97.63 E-value=7.3e-05 Score=61.86 Aligned_cols=63 Identities=24% Similarity=0.304 Sum_probs=51.5
Q ss_pred hcCC-CcEEEEcCccccccCcCC---cc-----EEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEecCCcH
Q psy6850 17 TSCK-EKVLITTNVLARGIDVEQ---VT-----IVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLVDEHSV 85 (118)
Q Consensus 17 ~~g~-~~iLv~T~~~~~Gidi~~---v~-----~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~~~~~~ 85 (118)
.+|. -.|-|||++++||.||.= |. +||....|. +..--.|-.||+||.|.+|.+-.|++-+|.
T Consensus 470 ~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerhe------SrRIDnQLrGRaGRQGDpGss~f~lSLeD~ 541 (925)
T PRK12903 470 KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAE------SRRIDNQLRGRSGRQGDVGESRFFISLDDQ 541 (925)
T ss_pred hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCc------hHHHHHHHhcccccCCCCCcceEEEecchH
Confidence 4564 468899999999999852 21 788888888 777788999999999999999999885543
No 127
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=97.58 E-value=0.00015 Score=60.30 Aligned_cols=72 Identities=18% Similarity=0.224 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhcCCCcEEEEcCccccccCcCCcc--EEEEecCCCCCCCC----------------C---------Ccch
Q psy6850 7 TSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVT--IVINFDMPIDMNGQ----------------A---------DCET 59 (118)
Q Consensus 7 ~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~--~VI~~~~p~~~~~~----------------~---------~~~~ 59 (118)
.+|.+++++|+.++..||++|+.+.+|+|+|+.. .||...+|. ...+ . ....
T Consensus 712 ~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf-~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~ 790 (850)
T TIGR01407 712 GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPF-ANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIR 790 (850)
T ss_pred ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCC-CCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHH
Confidence 4789999999999999999999999999999766 456666663 2111 0 1133
Q ss_pred hhhhhcccccCCC-ceEEEEE
Q psy6850 60 YLHRIGRTGRFGK-CGIAINL 79 (118)
Q Consensus 60 y~qr~GR~gR~~~-~g~~~~~ 79 (118)
+.|.+||.-|..+ .|.++++
T Consensus 791 l~Qa~GRlIRs~~D~G~v~il 811 (850)
T TIGR01407 791 LRQALGRLIRRENDRGSIVIL 811 (850)
T ss_pred HHHhhccccccCCceEEEEEE
Confidence 4688899999765 5665555
No 128
>PRK14873 primosome assembly protein PriA; Provisional
Probab=97.57 E-value=0.00017 Score=58.52 Aligned_cols=69 Identities=3% Similarity=0.032 Sum_probs=54.4
Q ss_pred HHHHHHHHhcCCCcEEEEcC----ccccccCcCCccEEEEe------cCCCCCCCCCCcchhhhhhcccccCCCceEEEE
Q psy6850 9 SSSSLNSFTSCKEKVLITTN----VLARGIDVEQVTIVINF------DMPIDMNGQADCETYLHRIGRTGRFGKCGIAIN 78 (118)
Q Consensus 9 r~~~~~~F~~g~~~iLv~T~----~~~~Gidi~~v~~VI~~------~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~ 78 (118)
+..++++|. ++.+|||+|. +++ +++.+|+.. ..|.+++.|.....+.|.+||+||.+..|.+++
T Consensus 461 ~d~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~i 534 (665)
T PRK14873 461 GDQVVDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVV 534 (665)
T ss_pred hHHHHHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEE
Confidence 345788997 5999999999 555 356766543 378888888888999999999999988999998
Q ss_pred EecCC
Q psy6850 79 LVDEH 83 (118)
Q Consensus 79 ~~~~~ 83 (118)
...++
T Consensus 535 q~~p~ 539 (665)
T PRK14873 535 VAESS 539 (665)
T ss_pred EeCCC
Confidence 85433
No 129
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=97.47 E-value=0.00014 Score=60.57 Aligned_cols=62 Identities=24% Similarity=0.272 Sum_probs=51.4
Q ss_pred cCC-CcEEEEcCccccccCcC---Ccc-----EEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEecCCcH
Q psy6850 18 SCK-EKVLITTNVLARGIDVE---QVT-----IVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLVDEHSV 85 (118)
Q Consensus 18 ~g~-~~iLv~T~~~~~Gidi~---~v~-----~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~~~~~~ 85 (118)
+|+ -.|-|||++++||.||. .|. +||....|. +..--.|-.||+||.|.+|.+..|++-+|.
T Consensus 613 AG~~g~VTIATNmAGRGTDIkl~~~v~~~GGLhVIgTer~e------s~Rid~Ql~GRagRQGdpGss~f~lSlEDd 683 (970)
T PRK12899 613 AGKLGAVTVATNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQ------SRRIDRQLRGRCARLGDPGAAKFFLSFEDR 683 (970)
T ss_pred cCCCCcEEEeeccccCCcccccCchHHhcCCcEEEeeccCc------hHHHHHHHhcccccCCCCCceeEEEEcchH
Confidence 454 46889999999999984 222 678888888 889999999999999999999999986654
No 130
>COG4889 Predicted helicase [General function prediction only]
Probab=97.46 E-value=0.00014 Score=60.48 Aligned_cols=74 Identities=26% Similarity=0.326 Sum_probs=60.2
Q ss_pred CCCCHHHHHHHHH---HHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCC---CceE
Q psy6850 2 GKGPNTSSSSSLN---SFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFG---KCGI 75 (118)
Q Consensus 2 g~l~~~~r~~~~~---~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~---~~g~ 75 (118)
|.|...+|.+.+. .|...+++||----.+++|+|+|.++.||.||.-. +.-+.+|.+||..|-. ..|.
T Consensus 507 GtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~------smVDIVQaVGRVMRKa~gK~yGY 580 (1518)
T COG4889 507 GTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRS------SMVDIVQAVGRVMRKAKGKKYGY 580 (1518)
T ss_pred ccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEEecCch------hHHHHHHHHHHHHHhCcCCccce
Confidence 6677777755443 45667899999889999999999999999999888 8899999999999843 3677
Q ss_pred EEEEec
Q psy6850 76 AINLVD 81 (118)
Q Consensus 76 ~~~~~~ 81 (118)
.|.-+.
T Consensus 581 IILPIa 586 (1518)
T COG4889 581 IILPIA 586 (1518)
T ss_pred EEEEec
Confidence 776654
No 131
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.38 E-value=0.00074 Score=45.70 Aligned_cols=44 Identities=23% Similarity=0.419 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcC--ccccccCcCC--ccEEEEecCCC
Q psy6850 6 NTSSSSSLNSFTSCKEKVLITTN--VLARGIDVEQ--VTIVINFDMPI 49 (118)
Q Consensus 6 ~~~r~~~~~~F~~g~~~iLv~T~--~~~~Gidi~~--v~~VI~~~~p~ 49 (118)
..++.+.+++|+.++-.||+++. .+.+|+|+|+ ++.||...+|-
T Consensus 45 ~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vii~glPf 92 (167)
T PF13307_consen 45 SKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVIIVGLPF 92 (167)
T ss_dssp CCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEEEES---
T ss_pred cchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhheeeecCCCC
Confidence 34678999999999999999999 9999999994 77899988883
No 132
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=97.34 E-value=0.00098 Score=54.24 Aligned_cols=66 Identities=24% Similarity=0.411 Sum_probs=52.0
Q ss_pred HHHHHHHHhc-CCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccC-C---CceEEEEEec
Q psy6850 9 SSSSLNSFTS-CKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRF-G---KCGIAINLVD 81 (118)
Q Consensus 9 r~~~~~~F~~-g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~-~---~~g~~~~~~~ 81 (118)
...++++|+. +.++|||+++.+..|.|.|.++.++..- |- ..-.++|.+||+-|. . ..|.++.|+.
T Consensus 579 ~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldK-pl------k~h~LlQai~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 579 YYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDK-PL------KYHGLLQAIARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred HHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEec-cc------cccHHHHHHHHhccccCCCCCCEEEEECcC
Confidence 3578999987 6889999999999999999999877665 43 334689999999993 2 2466776654
No 133
>KOG0925|consensus
Probab=97.34 E-value=0.00015 Score=56.76 Aligned_cols=62 Identities=23% Similarity=0.338 Sum_probs=46.4
Q ss_pred CCcEEEEcCccccccCcCCccEEEEecCC-------CCCCCC-----CCcchhhhhhcccccCCCceEEEEEecC
Q psy6850 20 KEKVLITTNVLARGIDVEQVTIVINFDMP-------IDMNGQ-----ADCETYLHRIGRTGRFGKCGIAINLVDE 82 (118)
Q Consensus 20 ~~~iLv~T~~~~~Gidi~~v~~VI~~~~p-------~~~~~~-----~~~~~y~qr~GR~gR~~~~g~~~~~~~~ 82 (118)
..+|+|+|++++..+.+++|.+||.-++. +.+... -+..+--||.|||||. ++|.|+.++++
T Consensus 313 ~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte 386 (699)
T KOG0925|consen 313 GRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTE 386 (699)
T ss_pred cceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecH
Confidence 35799999999999999999999974431 111000 0556677899999886 69999999973
No 134
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.32 E-value=0.0003 Score=59.26 Aligned_cols=62 Identities=26% Similarity=0.295 Sum_probs=51.0
Q ss_pred cCC-CcEEEEcCccccccCcC---Cc-----cEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEecCCcH
Q psy6850 18 SCK-EKVLITTNVLARGIDVE---QV-----TIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLVDEHSV 85 (118)
Q Consensus 18 ~g~-~~iLv~T~~~~~Gidi~---~v-----~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~~~~~~ 85 (118)
+|. -.|-|||++++||.||. .| -+||--..|. |..--.|-.||+||.|.+|.+-.|++-+|.
T Consensus 673 AG~~GaVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerhe------SrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 673 AGQPGTVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHE------SRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred cCCCCcEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCC------cHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 353 35889999999999985 22 2678888888 888999999999999999999999985554
No 135
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=97.29 E-value=0.00038 Score=56.85 Aligned_cols=62 Identities=26% Similarity=0.280 Sum_probs=50.8
Q ss_pred cCC-CcEEEEcCccccccCcC----------Cc-----cEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEec
Q psy6850 18 SCK-EKVLITTNVLARGIDVE----------QV-----TIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLVD 81 (118)
Q Consensus 18 ~g~-~~iLv~T~~~~~Gidi~----------~v-----~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~~ 81 (118)
.|+ -.|-|||++++||.||. .| -+||-...|. +..--.|-.||+||.|.+|.+-.|++
T Consensus 472 AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerhe------SrRID~QLrGRaGRQGDpGss~f~lS 545 (764)
T PRK12326 472 AGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHR------SERLDNQLRGRAGRQGDPGSSVFFVS 545 (764)
T ss_pred cCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCc------hHHHHHHHhcccccCCCCCceeEEEE
Confidence 454 35889999999999975 12 2678888888 88888999999999999999999998
Q ss_pred CCcH
Q psy6850 82 EHSV 85 (118)
Q Consensus 82 ~~~~ 85 (118)
-+|.
T Consensus 546 leDd 549 (764)
T PRK12326 546 LEDD 549 (764)
T ss_pred cchh
Confidence 6554
No 136
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.21 E-value=0.0028 Score=41.96 Aligned_cols=44 Identities=18% Similarity=0.370 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhcCC-CcEEEEcCccccccCcCC--ccEEEEecCCC
Q psy6850 6 NTSSSSSLNSFTSCK-EKVLITTNVLARGIDVEQ--VTIVINFDMPI 49 (118)
Q Consensus 6 ~~~r~~~~~~F~~g~-~~iLv~T~~~~~Gidi~~--v~~VI~~~~p~ 49 (118)
..+...++++|+... ..||++|.-+.+|+|+|+ ++.||...+|.
T Consensus 33 ~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 33 GKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred hhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 445688999999864 379999988999999995 56788888773
No 137
>KOG0391|consensus
Probab=97.13 E-value=0.0016 Score=55.83 Aligned_cols=78 Identities=19% Similarity=0.274 Sum_probs=61.3
Q ss_pred CCCCHHHHHHHHHHHhcCC--CcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEE
Q psy6850 2 GKGPNTSSSSSLNSFTSCK--EKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINL 79 (118)
Q Consensus 2 g~l~~~~r~~~~~~F~~g~--~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~ 79 (118)
|.-+-++|+..+++|.... ..+|+.|-..+.|||+.+.+.||+||--|...-+....+..||||++ +.=..|-|
T Consensus 1308 g~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqt----RDVHIYRL 1383 (1958)
T KOG0391|consen 1308 GNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQT----RDVHIYRL 1383 (1958)
T ss_pred CCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCc----cceEEEEe
Confidence 5567899999999999874 47889999999999999999999999888443344456777777776 34567777
Q ss_pred ecCC
Q psy6850 80 VDEH 83 (118)
Q Consensus 80 ~~~~ 83 (118)
+++.
T Consensus 1384 ISe~ 1387 (1958)
T KOG0391|consen 1384 ISER 1387 (1958)
T ss_pred eccc
Confidence 7754
No 138
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.01 E-value=0.0017 Score=54.67 Aligned_cols=88 Identities=16% Similarity=0.205 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcCccccccCcCC--ccEEEEecCCCCCCCC----------------CC---------cc
Q psy6850 6 NTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQ--VTIVINFDMPIDMNGQ----------------AD---------CE 58 (118)
Q Consensus 6 ~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~--v~~VI~~~~p~~~~~~----------------~~---------~~ 58 (118)
...|.+++++|+.++-.||++|..+.+|+|+|+ +..||...+|- ...+ .. ..
T Consensus 790 ~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI~kLPF-~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~ 868 (928)
T PRK08074 790 SGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVIVRLPF-APPDQPVMEAKSEWAKEQGENPFQELSLPQAVL 868 (928)
T ss_pred CCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEEecCCC-CCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHH
Confidence 356889999999998899999999999999995 46787766663 1111 01 22
Q ss_pred hhhhhhcccccCCC-ceEEEEEecCCc-HHHHHHHHHH
Q psy6850 59 TYLHRIGRTGRFGK-CGIAINLVDEHS-VGVLKDIEKH 94 (118)
Q Consensus 59 ~y~qr~GR~gR~~~-~g~~~~~~~~~~-~~~~~~~~~~ 94 (118)
.+.|-+||.-|..+ .|.++++-.+-. ..+-+.+.+.
T Consensus 869 ~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~Yg~~~l~s 906 (928)
T PRK08074 869 RFKQGFGRLIRTETDRGTVFVLDRRLTTTSYGKYFLES 906 (928)
T ss_pred HHHhhhhhhcccCCceEEEEEecCccccchHHHHHHHh
Confidence 33678899988764 676555533322 2233444444
No 139
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.01 E-value=0.0036 Score=41.46 Aligned_cols=42 Identities=21% Similarity=0.408 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCCC---cEEEEcCc--cccccCcCC--ccEEEEecCCC
Q psy6850 8 SSSSSLNSFTSCKE---KVLITTNV--LARGIDVEQ--VTIVINFDMPI 49 (118)
Q Consensus 8 ~r~~~~~~F~~g~~---~iLv~T~~--~~~Gidi~~--v~~VI~~~~p~ 49 (118)
+..+++++|++..- .||+++.- +.+|+|+|+ ++.||...+|-
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 44689999998654 68888876 999999995 67888888773
No 140
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=96.95 E-value=0.0014 Score=54.76 Aligned_cols=62 Identities=26% Similarity=0.249 Sum_probs=50.0
Q ss_pred cCC-CcEEEEcCccccccCcC--------------------------------Cc-----cEEEEecCCCCCCCCCCcch
Q psy6850 18 SCK-EKVLITTNVLARGIDVE--------------------------------QV-----TIVINFDMPIDMNGQADCET 59 (118)
Q Consensus 18 ~g~-~~iLv~T~~~~~Gidi~--------------------------------~v-----~~VI~~~~p~~~~~~~~~~~ 59 (118)
.|+ -.|-|||++++||.||. .| -+||--..|. +..-
T Consensus 494 AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerhe------SrRI 567 (913)
T PRK13103 494 AGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHE------SRRI 567 (913)
T ss_pred CCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCc------hHHH
Confidence 463 46889999999999983 12 1677777887 8888
Q ss_pred hhhhhcccccCCCceEEEEEecCCcH
Q psy6850 60 YLHRIGRTGRFGKCGIAINLVDEHSV 85 (118)
Q Consensus 60 y~qr~GR~gR~~~~g~~~~~~~~~~~ 85 (118)
=.|-.||+||.|.+|.+-.|++-+|.
T Consensus 568 D~QLrGRaGRQGDPGsS~f~lSlED~ 593 (913)
T PRK13103 568 DNQLRGRAGRQGDPGSSRFYLSLEDS 593 (913)
T ss_pred HHHhccccccCCCCCceEEEEEcCcH
Confidence 88999999999999999999986554
No 141
>KOG0388|consensus
Probab=96.85 E-value=0.0024 Score=52.33 Aligned_cols=76 Identities=16% Similarity=0.258 Sum_probs=64.8
Q ss_pred CCCCHHHHHHHHHHHhcCCC-cEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCc--eEEEE
Q psy6850 2 GKGPNTSSSSSLNSFTSCKE-KVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKC--GIAIN 78 (118)
Q Consensus 2 g~l~~~~r~~~~~~F~~g~~-~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~--g~~~~ 78 (118)
|.....+|...+.+|...++ -+|+.|-+.+.|||+...+.||.||--| +|..=.|..-||.|.|+. -.++-
T Consensus 1076 GSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFYdSDW------NPT~D~QAMDRAHRLGQTrdvtvyr 1149 (1185)
T KOG0388|consen 1076 GSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIFYDSDW------NPTADQQAMDRAHRLGQTRDVTVYR 1149 (1185)
T ss_pred CcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEEecCCC------CcchhhHHHHHHHhccCccceeeee
Confidence 66778899999999998765 5679999999999999999999999999 999999999999999873 34555
Q ss_pred EecCC
Q psy6850 79 LVDEH 83 (118)
Q Consensus 79 ~~~~~ 83 (118)
++...
T Consensus 1150 l~~rg 1154 (1185)
T KOG0388|consen 1150 LITRG 1154 (1185)
T ss_pred ecccc
Confidence 66544
No 142
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=96.84 E-value=0.0072 Score=48.85 Aligned_cols=96 Identities=16% Similarity=0.173 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhcCCC-cEEEEcCccccccCcCC--ccEEEEecCCCCCCCCC-------------------------Cc
Q psy6850 6 NTSSSSSLNSFTSCKE-KVLITTNVLARGIDVEQ--VTIVINFDMPIDMNGQA-------------------------DC 57 (118)
Q Consensus 6 ~~~r~~~~~~F~~g~~-~iLv~T~~~~~Gidi~~--v~~VI~~~~p~~~~~~~-------------------------~~ 57 (118)
..++...+++|+.+.- -++|+|..+.+|+|+|+ +..||...+|. ...+. ..
T Consensus 513 ~~~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~~lPf-p~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~ 591 (654)
T COG1199 513 EDEREELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIVGLPF-PNPDDPLLKARLEFLKRLGGDPFEEFYLPPAV 591 (654)
T ss_pred CCcHHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEEecCC-CCCCCHHHHHHHHHHHHhcCCCceEeehHHHH
Confidence 3455689999998766 89999999999999984 46788877773 32211 13
Q ss_pred chhhhhhcccccCCC-ceEEEEEecCCcHH-HHHHHHHHhCCCceec
Q psy6850 58 ETYLHRIGRTGRFGK-CGIAINLVDEHSVG-VLKDIEKHFGKKIELL 102 (118)
Q Consensus 58 ~~y~qr~GR~gR~~~-~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 102 (118)
....|.+||.-|..+ .|+++++-.+-... +-+.+.+.+...+...
T Consensus 592 ~~l~QavGRlIR~~~D~G~ivllD~R~~~~~y~~~l~~~l~~~~~~~ 638 (654)
T COG1199 592 IKLRQAVGRLIRSEDDRGVIVLLDKRYATKRYGKLLLDSLPPFPKSK 638 (654)
T ss_pred HHHHHhhccccccCCCceEEEEecccchhhhHHHHHHHhCCCCcccc
Confidence 445789999999654 67766664433333 3344444444433333
No 143
>KOG0389|consensus
Probab=96.74 E-value=0.0061 Score=50.27 Aligned_cols=78 Identities=18% Similarity=0.223 Sum_probs=63.4
Q ss_pred CCCCHHHHHHHHHHHhcCC-C-cEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCC--ceEEE
Q psy6850 2 GKGPNTSSSSSLNSFTSCK-E-KVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGK--CGIAI 77 (118)
Q Consensus 2 g~l~~~~r~~~~~~F~~g~-~-~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~--~g~~~ 77 (118)
|.-+-.+|+.++++|...+ + -+|+.|-+.+-|||+...+.||.||+-- +|-.=.|.--|+.|.|+ +=.++
T Consensus 809 GsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dF------NP~dD~QAEDRcHRvGQtkpVtV~ 882 (941)
T KOG0389|consen 809 GSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDF------NPYDDKQAEDRCHRVGQTKPVTVY 882 (941)
T ss_pred CCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCC------CCcccchhHHHHHhhCCcceeEEE
Confidence 5566789999999999874 3 4779999999999999999999999887 77777787778888776 45577
Q ss_pred EEecCCcH
Q psy6850 78 NLVDEHSV 85 (118)
Q Consensus 78 ~~~~~~~~ 85 (118)
-|++....
T Consensus 883 rLItk~TI 890 (941)
T KOG0389|consen 883 RLITKSTI 890 (941)
T ss_pred EEEecCcH
Confidence 77776544
No 144
>KOG1000|consensus
Probab=96.61 E-value=0.0063 Score=48.09 Aligned_cols=69 Identities=16% Similarity=0.304 Sum_probs=58.4
Q ss_pred CCCCHHHHHHHHHHHhcC-CCcE-EEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEE
Q psy6850 2 GKGPNTSSSSSLNSFTSC-KEKV-LITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIA 76 (118)
Q Consensus 2 g~l~~~~r~~~~~~F~~g-~~~i-Lv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~ 76 (118)
|..+..+|....++|... ++.| ++.-.+++.|+++...+.|+...+|| +|..++|.--|+.|.|+...+
T Consensus 524 Gst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~w------nPgvLlQAEDRaHRiGQkssV 594 (689)
T KOG1000|consen 524 GSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHW------NPGVLLQAEDRAHRIGQKSSV 594 (689)
T ss_pred CCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecC------CCceEEechhhhhhcccccee
Confidence 677889999999999987 4443 45566889999999999999999999 999999999999998875443
No 145
>KOG1015|consensus
Probab=96.60 E-value=0.0039 Score=52.56 Aligned_cols=72 Identities=24% Similarity=0.217 Sum_probs=62.8
Q ss_pred CCCCHHHHHHHHHHHhcCC----CcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEE
Q psy6850 2 GKGPNTSSSSSLNSFTSCK----EKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAI 77 (118)
Q Consensus 2 g~l~~~~r~~~~~~F~~g~----~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~ 77 (118)
|..+..+|.+..++|..-. ...||.|-+.+.|||+-..+.||.||..| +|.-=.|.+=|+-|+|+.-.|+
T Consensus 1196 Gst~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasW------NPSyDtQSIFRvyRfGQtKPvy 1269 (1567)
T KOG1015|consen 1196 GSTTSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASW------NPSYDTQSIFRVYRFGQTKPVY 1269 (1567)
T ss_pred CcccHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEeccc------CCccchHHHHHHHhhcCcCcee
Confidence 6677889999999999753 24889999999999999999999999999 9998899999999999866665
Q ss_pred EE
Q psy6850 78 NL 79 (118)
Q Consensus 78 ~~ 79 (118)
++
T Consensus 1270 iY 1271 (1567)
T KOG1015|consen 1270 IY 1271 (1567)
T ss_pred eh
Confidence 55
No 146
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=96.59 E-value=0.016 Score=48.38 Aligned_cols=86 Identities=17% Similarity=0.164 Sum_probs=56.0
Q ss_pred HHHHHHHHhcCCCcEEEEcCccccccCcC--CccEEEEecCCCCCCCCC-------------------------Ccchhh
Q psy6850 9 SSSSLNSFTSCKEKVLITTNVLARGIDVE--QVTIVINFDMPIDMNGQA-------------------------DCETYL 61 (118)
Q Consensus 9 r~~~~~~F~~g~~~iLv~T~~~~~Gidi~--~v~~VI~~~~p~~~~~~~-------------------------~~~~y~ 61 (118)
+.+++++|++++-.||++|+.+.+|+|+| ....||...+|- ...+. ....+.
T Consensus 683 ~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~kLPF-~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklk 761 (820)
T PRK07246 683 AYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVITRLPF-DNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLK 761 (820)
T ss_pred HHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEecCCC-CCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHH
Confidence 56789999999899999999999999997 345556656552 21110 023346
Q ss_pred hhhcccccCCC-ceEEEEEecCC-cHHHHHHHHHHh
Q psy6850 62 HRIGRTGRFGK-CGIAINLVDEH-SVGVLKDIEKHF 95 (118)
Q Consensus 62 qr~GR~gR~~~-~g~~~~~~~~~-~~~~~~~~~~~~ 95 (118)
|-+||.=|... .|+++++-.+- ...+-+.+.+.+
T Consensus 762 Qg~GRLIRs~~D~Gvv~ilD~R~~~k~Yg~~~l~sL 797 (820)
T PRK07246 762 QAIGRTMRREDQKSAVLILDRRILTKSYGKQILASL 797 (820)
T ss_pred HHhcccccCCCCcEEEEEECCcccccHHHHHHHHhC
Confidence 78899988764 67766654332 223335554444
No 147
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=96.42 E-value=0.012 Score=48.26 Aligned_cols=73 Identities=21% Similarity=0.231 Sum_probs=50.2
Q ss_pred HHHHHHHHHhc----CCCcEEEEcCccccccCcCC--ccEEEEecCCCCCCCCC----------------C---------
Q psy6850 8 SSSSSLNSFTS----CKEKVLITTNVLARGIDVEQ--VTIVINFDMPIDMNGQA----------------D--------- 56 (118)
Q Consensus 8 ~r~~~~~~F~~----g~~~iLv~T~~~~~Gidi~~--v~~VI~~~~p~~~~~~~----------------~--------- 56 (118)
.|.+++++|++ ++-.||++|..+.+|+|+|+ ++.||...+|- ...+. .
T Consensus 569 ~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~vII~kLPF-~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A 647 (697)
T PRK11747 569 PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQVIITKIPF-AVPDSPVEATLAEWLKSRGGNPFMEISVPDA 647 (697)
T ss_pred hHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEEEEEcCCC-CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 46778877774 67789999999999999985 77888877763 21110 0
Q ss_pred cchhhhhhcccccCCC-ceEEEEEec
Q psy6850 57 CETYLHRIGRTGRFGK-CGIAINLVD 81 (118)
Q Consensus 57 ~~~y~qr~GR~gR~~~-~g~~~~~~~ 81 (118)
...+.|-+||.-|... .|.++++-.
T Consensus 648 ~~kl~Qg~GRlIRs~~D~G~i~ilD~ 673 (697)
T PRK11747 648 SFKLIQAVGRLIRSEQDRGRVTILDR 673 (697)
T ss_pred HHHHHHHhccccccCCceEEEEEEcc
Confidence 1233577889888754 566555533
No 148
>KOG1002|consensus
Probab=96.30 E-value=0.016 Score=46.06 Aligned_cols=78 Identities=14% Similarity=0.181 Sum_probs=59.5
Q ss_pred CCCCHHHHHHHHHHHhcC-CCcE-EEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCC--ceEEE
Q psy6850 2 GKGPNTSSSSSLNSFTSC-KEKV-LITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGK--CGIAI 77 (118)
Q Consensus 2 g~l~~~~r~~~~~~F~~g-~~~i-Lv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~--~g~~~ 77 (118)
|+|++..|..+++.|++. .+.| ||.-.+.+..+|+.....|.+.|+=| ++.--.|..-|..|-|+ +-.++
T Consensus 670 GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPWW------NpaVe~Qa~DRiHRIGQ~rPvkvv 743 (791)
T KOG1002|consen 670 GSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPWW------NPAVEWQAQDRIHRIGQYRPVKVV 743 (791)
T ss_pred cCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecccc------cHHHHhhhhhhHHhhcCccceeEE
Confidence 899999999999999987 5664 46667777779999999999999888 66555555555555443 56677
Q ss_pred EEecCCcH
Q psy6850 78 NLVDEHSV 85 (118)
Q Consensus 78 ~~~~~~~~ 85 (118)
.|+-+...
T Consensus 744 rf~iEnsi 751 (791)
T KOG1002|consen 744 RFCIENSI 751 (791)
T ss_pred EeehhccH
Confidence 88775544
No 149
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=96.13 E-value=0.0058 Score=50.54 Aligned_cols=57 Identities=19% Similarity=0.338 Sum_probs=47.3
Q ss_pred HHHHHHHHHhcC--CCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccC
Q psy6850 8 SSSSSLNSFTSC--KEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRF 70 (118)
Q Consensus 8 ~r~~~~~~F~~g--~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~ 70 (118)
+-.+.++.|... --+|.|+.+++..|+|+|.|..++.+-.-. |...|.|++||+-|.
T Consensus 467 ~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~Vr------SktkF~QMvGRGTRl 525 (875)
T COG4096 467 QAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVR------SKTKFKQMVGRGTRL 525 (875)
T ss_pred hhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhh------hHHHHHHHhcCcccc
Confidence 335567777764 347889999999999999999999887777 999999999998884
No 150
>KOG4439|consensus
Probab=96.09 E-value=0.013 Score=47.97 Aligned_cols=72 Identities=13% Similarity=0.127 Sum_probs=60.7
Q ss_pred CCCCCHHHHHHHHHHHhcC--CCcEE-EEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEE
Q psy6850 1 MGKGPNTSSSSSLNSFTSC--KEKVL-ITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAI 77 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g--~~~iL-v~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~ 77 (118)
||.....+|..++++|... ..+|+ +.-.+.+.|+|+-..+++|..|+.| ++..--|.+-|.-|.|+.-.++
T Consensus 777 ~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHW------NPaLEqQAcDRIYR~GQkK~V~ 850 (901)
T KOG4439|consen 777 TGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHW------NPALEQQACDRIYRMGQKKDVF 850 (901)
T ss_pred cCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEeccc------CHHHHHHHHHHHHHhcccCceE
Confidence 6889999999999999864 45554 5666778889999999999999999 9999999999999999765544
Q ss_pred E
Q psy6850 78 N 78 (118)
Q Consensus 78 ~ 78 (118)
+
T Consensus 851 I 851 (901)
T KOG4439|consen 851 I 851 (901)
T ss_pred E
Confidence 3
No 151
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=96.01 E-value=0.026 Score=47.09 Aligned_cols=50 Identities=16% Similarity=0.126 Sum_probs=36.2
Q ss_pred EEcCccccccCcCC----------------------c----------cEEEEecCCCCCCCCCCcchhhhhhc--ccccC
Q psy6850 25 ITTNVLARGIDVEQ----------------------V----------TIVINFDMPIDMNGQADCETYLHRIG--RTGRF 70 (118)
Q Consensus 25 v~T~~~~~Gidi~~----------------------v----------~~VI~~~~p~~~~~~~~~~~y~qr~G--R~gR~ 70 (118)
|+|.....|+|+|. + ++||.|++-. +++.++- |++|.
T Consensus 431 ~~~~~~~e~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~e~~P~~VImYEP~~---------sfIR~IEvyra~r~ 501 (814)
T TIGR00596 431 FEIIDEENDIDIYSGAEFDNLPQHITHFLWGERDEYVLRCSLEELMPRYVIMYEPDI---------SFIRQLEVYKASRP 501 (814)
T ss_pred ccccccccccccchhhccccccceeeeecccccchhhHHHHHhhhCCCEEEEECCCh---------HHHHHHHHHHccCC
Confidence 67888888999987 5 8999999443 4555555 55666
Q ss_pred CCceEEEEEecCC
Q psy6850 71 GKCGIAINLVDEH 83 (118)
Q Consensus 71 ~~~g~~~~~~~~~ 83 (118)
++++.++.++...
T Consensus 502 ~r~~rVyfL~y~~ 514 (814)
T TIGR00596 502 LRPLRVYFLYYGG 514 (814)
T ss_pred CCCcEEEEEEECC
Confidence 6667788887643
No 152
>KOG1513|consensus
Probab=95.77 E-value=0.016 Score=48.22 Aligned_cols=61 Identities=20% Similarity=0.367 Sum_probs=49.1
Q ss_pred HHHhcCCCcEEEEcCccccccCcCCccEE--------EEecCCCCCCCCCCcchhhhhhcccccCCC-ceEEEEEe
Q psy6850 14 NSFTSCKEKVLITTNVLARGIDVEQVTIV--------INFDMPIDMNGQADCETYLHRIGRTGRFGK-CGIAINLV 80 (118)
Q Consensus 14 ~~F~~g~~~iLv~T~~~~~Gidi~~v~~V--------I~~~~p~~~~~~~~~~~y~qr~GR~gR~~~-~g~~~~~~ 80 (118)
++|.+|+..|-|-+.+++-||.+..=+.| |-+.+|| +...-+|+.||+-|..+ .+.-++|+
T Consensus 851 qrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPW------SADrAIQQFGRTHRSNQVsaPEYvFl 920 (1300)
T KOG1513|consen 851 QRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPW------SADRAIQQFGRTHRSNQVSAPEYVFL 920 (1300)
T ss_pred hhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCc------chhHHHHHhcccccccccCCCeEEEE
Confidence 57999999999999999999998755544 4488999 99999999999999875 34444443
No 153
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=95.71 E-value=0.021 Score=48.69 Aligned_cols=45 Identities=20% Similarity=0.207 Sum_probs=35.1
Q ss_pred CCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCC
Q psy6850 19 CKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGK 72 (118)
Q Consensus 19 g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~ 72 (118)
+...|+|+|++++-|+|+ +.+++|- -|. +..+.+|++||.-|.+.
T Consensus 837 ~~~~i~v~Tqv~E~g~D~-dfd~~~~--~~~------~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 837 NHLFIVLATPVEEVGRDH-DYDWAIA--DPS------SMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred CCCeEEEEeeeEEEEecc-cCCeeee--ccC------cHHHHHHHhhccccccc
Confidence 356799999999999998 4555443 233 77899999999998764
No 154
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=95.62 E-value=0.094 Score=40.98 Aligned_cols=82 Identities=16% Similarity=0.157 Sum_probs=60.3
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEEcCcc--ccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCC------CceE
Q psy6850 4 GPNTSSSSSLNSFTSCKEKVLITTNVL--ARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFG------KCGI 75 (118)
Q Consensus 4 l~~~~r~~~~~~F~~g~~~iLv~T~~~--~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~------~~g~ 75 (118)
.++.+-.++=..|..|+.+||+.|.-+ =+=..+-+++.||.|.+|. .+.-|...+...+... ....
T Consensus 334 ts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viFY~~P~------~p~fY~El~n~~~~~~~~~~~~~~~~ 407 (442)
T PF06862_consen 334 TSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIFYGPPE------NPQFYSELLNMLDESSGGEVDAADAT 407 (442)
T ss_pred CCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEEECCCC------ChhHHHHHHhhhcccccccccccCce
Confidence 456777788899999999999999832 2235677899999999998 8777777665443332 2567
Q ss_pred EEEEecCCcHHHHHHH
Q psy6850 76 AINLVDEHSVGVLKDI 91 (118)
Q Consensus 76 ~~~~~~~~~~~~~~~~ 91 (118)
|.++++..|...+..|
T Consensus 408 ~~~lysk~D~~~LErI 423 (442)
T PF06862_consen 408 VTVLYSKYDALRLERI 423 (442)
T ss_pred EEEEecHhHHHHHHHH
Confidence 8888887776544433
No 155
>KOG0701|consensus
Probab=95.52 E-value=0.0029 Score=55.57 Aligned_cols=56 Identities=30% Similarity=0.534 Sum_probs=52.2
Q ss_pred HHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccC
Q psy6850 9 SSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRF 70 (118)
Q Consensus 9 r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~ 70 (118)
+..++..|+.-++++|++|.++..|+|++.++.|+.++.|. ....|+|+.||+-..
T Consensus 343 ~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~~~~~~~~~~~------~~~~~vq~~~r~~~~ 398 (1606)
T KOG0701|consen 343 QAEVLRRFHFHELNLLIATSVLEEGVDVPKCNLVVLFDAPT------YYRSYVQKKGRARAA 398 (1606)
T ss_pred hHHHHHHHhhhhhhHHHHHHHHHhhcchhhhhhheeccCcc------hHHHHHHhhcccccc
Confidence 67889999999999999999999999999999999999998 889999999998554
No 156
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=95.50 E-value=0.022 Score=47.62 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=21.1
Q ss_pred hhhhcccccCCCceEEEEEecCCcH
Q psy6850 61 LHRIGRTGRFGKCGIAINLVDEHSV 85 (118)
Q Consensus 61 ~qr~GR~gR~~~~g~~~~~~~~~~~ 85 (118)
.|-.||+||.|.+|.+-.|++-+|.
T Consensus 609 nQLrGRaGRQGDPG~s~f~lSLED~ 633 (870)
T CHL00122 609 NQLRGRAGRQGDPGSSRFFLSLEDN 633 (870)
T ss_pred HHHhccccCCCCCCcceEEEEeccH
Confidence 4777999999999999999985554
No 157
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=95.44 E-value=0.014 Score=49.46 Aligned_cols=41 Identities=24% Similarity=0.527 Sum_probs=36.0
Q ss_pred HHHHHHHHhcCCCcEEEEcC----ccccccCcC-CccEEEEecCCC
Q psy6850 9 SSSSLNSFTSCKEKVLITTN----VLARGIDVE-QVTIVINFDMPI 49 (118)
Q Consensus 9 r~~~~~~F~~g~~~iLv~T~----~~~~Gidi~-~v~~VI~~~~p~ 49 (118)
..+.++.|..|++++||+.. ++-||+|+| .++++|.|+.|.
T Consensus 372 ~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 372 KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 37789999999999998765 899999999 677899999993
No 158
>KOG0951|consensus
Probab=94.85 E-value=0.14 Score=44.69 Aligned_cols=87 Identities=10% Similarity=0.101 Sum_probs=64.0
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEE----ecCCCCCCCCCCcchhhhhhcccccCCCceEE
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVIN----FDMPIDMNGQADCETYLHRIGRTGRFGKCGIA 76 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~----~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~ 76 (118)
|-+|+..+..-+-.-|..|.++++|...- .+|+....--+|+. ||.....-.+.+.....|++|+|.| .|.|
T Consensus 1412 ~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~ 1487 (1674)
T KOG0951|consen 1412 HEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKC 1487 (1674)
T ss_pred ccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccE
Confidence 56788888888888899999999998877 88877644333332 5654433444577888999999987 4789
Q ss_pred EEEecCCcHHHHHHH
Q psy6850 77 INLVDEHSVGVLKDI 91 (118)
Q Consensus 77 ~~~~~~~~~~~~~~~ 91 (118)
++++......++++.
T Consensus 1488 vi~~~~~~k~yykkf 1502 (1674)
T KOG0951|consen 1488 VIMCHTPKKEYYKKF 1502 (1674)
T ss_pred EEEecCchHHHHHHh
Confidence 999987777665543
No 159
>KOG0386|consensus
Probab=94.75 E-value=0.11 Score=44.29 Aligned_cols=74 Identities=20% Similarity=0.211 Sum_probs=62.7
Q ss_pred CCCCHHHHHHHHHHHhcCCC---cEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEE
Q psy6850 2 GKGPNTSSSSSLNSFTSCKE---KVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAIN 78 (118)
Q Consensus 2 g~l~~~~r~~~~~~F~~g~~---~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~ 78 (118)
|.-..++|-..++.|..-.. .+|..|-+.+.|+|+...+.||.||--| ++....|+--||-|-|+.-.+-+
T Consensus 758 G~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdw------np~~d~qaqdrahrigq~~evRv 831 (1157)
T KOG0386|consen 758 GQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDW------NPHQDLQAQDRAHRIGQKKEVRV 831 (1157)
T ss_pred CCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCC------CchhHHHHHHHHHHhhchhheee
Confidence 45567899999999998654 4789999999999999999999999999 99999999999999887655555
Q ss_pred Eec
Q psy6850 79 LVD 81 (118)
Q Consensus 79 ~~~ 81 (118)
+..
T Consensus 832 ~rl 834 (1157)
T KOG0386|consen 832 LRL 834 (1157)
T ss_pred eee
Confidence 543
No 160
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=94.69 E-value=0.063 Score=38.56 Aligned_cols=60 Identities=18% Similarity=0.200 Sum_probs=49.6
Q ss_pred CcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccc-cCCCceEEEEEecCCcHH
Q psy6850 21 EKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTG-RFGKCGIAINLVDEHSVG 86 (118)
Q Consensus 21 ~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~g-R~~~~g~~~~~~~~~~~~ 86 (118)
..|+|+=+.++||+-+++..+....--+. ...++.||.-.-| |.|-...|-++.+++-..
T Consensus 136 ~~I~VGGn~LsRGlTleGL~vsYf~R~s~------~~DTL~QmgRwFGYR~gY~dl~Ri~~~~~l~~ 196 (239)
T PF10593_consen 136 NVIAVGGNKLSRGLTLEGLTVSYFLRNSK------QYDTLMQMGRWFGYRPGYEDLCRIYMPEELYD 196 (239)
T ss_pred eEEEECCccccCceeECCcEEEEecCCCc------hHHHHHHHhhcccCCcccccceEEecCHHHHH
Confidence 78999999999999999998887777777 8899999988777 676678888887744333
No 161
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.47 E-value=0.23 Score=40.88 Aligned_cols=72 Identities=22% Similarity=0.326 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhc----CCCcEEEEc--CccccccCcCC--ccEEEEecCCCCCCCC-----------------CCc----
Q psy6850 7 TSSSSSLNSFTS----CKEKVLITT--NVLARGIDVEQ--VTIVINFDMPIDMNGQ-----------------ADC---- 57 (118)
Q Consensus 7 ~~r~~~~~~F~~----g~~~iLv~T--~~~~~Gidi~~--v~~VI~~~~p~~~~~~-----------------~~~---- 57 (118)
.++.+++++|+. +.-.||+|+ ..+++|||+++ ++.||..++|- .... ...
T Consensus 565 ~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGIDf~~~~~r~ViivGlPf-~~~~~~~~~~~~~~~~~~~~~~~~~~~y 643 (705)
T TIGR00604 565 QETSDALERYKQAVSEGRGAVLLSVAGGKVSEGIDFCDDLGRAVIMVGIPY-EYTESRILLARLEFLRDQYPIRENQDFY 643 (705)
T ss_pred chHHHHHHHHHHHHhcCCceEEEEecCCcccCccccCCCCCcEEEEEccCC-CCCCCHHHHHHHHHHHhhcCCCccHHHH
Confidence 467889999975 355699998 88999999985 68899898884 1110 011
Q ss_pred -----chhhhhhcccccCCC-ceEEEEE
Q psy6850 58 -----ETYLHRIGRTGRFGK-CGIAINL 79 (118)
Q Consensus 58 -----~~y~qr~GR~gR~~~-~g~~~~~ 79 (118)
....|.+||+=|..+ .|.++.+
T Consensus 644 ~~~a~~~v~QaiGR~IR~~~D~G~iill 671 (705)
T TIGR00604 644 EFDAMRAVNQAIGRVIRHKDDYGSIVLL 671 (705)
T ss_pred HHHHHHHHHHHhCccccCcCceEEEEEE
Confidence 234688899999765 5655544
No 162
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=94.18 E-value=0.34 Score=39.58 Aligned_cols=73 Identities=21% Similarity=0.160 Sum_probs=50.3
Q ss_pred HHHHHHHHhcC----CCcEEEEcCccccccCc----------CCccEEEEecCCCCCCCC------------CC------
Q psy6850 9 SSSSLNSFTSC----KEKVLITTNVLARGIDV----------EQVTIVINFDMPIDMNGQ------------AD------ 56 (118)
Q Consensus 9 r~~~~~~F~~g----~~~iLv~T~~~~~Gidi----------~~v~~VI~~~~p~~~~~~------------~~------ 56 (118)
+...+++|+.. +-.||++|+.+-.|+|+ ..+..||..-+|-.. .+ .+
T Consensus 507 ~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~-~dp~a~~~~~~~~g~~~f~~~p 585 (636)
T TIGR03117 507 LASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPDKDNLLTDLIITCAPFGL-NRSLSMLKRIRKTSVRPWEIIN 585 (636)
T ss_pred HHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCCCCCcccEEEEEeCCCCc-CChHHHHHHHHhcCCChHhhhH
Confidence 46789999984 78999999999999999 257888887777311 10 01
Q ss_pred --cchhhhhhcccccCCC---ceEEEEEecC
Q psy6850 57 --CETYLHRIGRTGRFGK---CGIAINLVDE 82 (118)
Q Consensus 57 --~~~y~qr~GR~gR~~~---~g~~~~~~~~ 82 (118)
.-.+.|-+||.=|... .|.+.++-.+
T Consensus 586 ~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 586 ESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred HHHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 1233567788877654 5766666444
No 163
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=93.84 E-value=0.058 Score=45.92 Aligned_cols=31 Identities=23% Similarity=0.254 Sum_probs=27.7
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccc
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLA 31 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~ 31 (118)
||.|+..++++++++|.+|+.+|||+|..+.
T Consensus 162 h~~l~~~ekee~le~i~~gdfdIlitTs~FL 192 (1187)
T COG1110 162 HSALPTKEKEEALERIESGDFDILITTSQFL 192 (1187)
T ss_pred ccccchHHHHHHHHHHhcCCccEEEEeHHHH
Confidence 8999999999999999999999999998543
No 164
>KOG0921|consensus
Probab=93.83 E-value=0.025 Score=47.63 Aligned_cols=80 Identities=19% Similarity=0.260 Sum_probs=61.2
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCC------------CCCCCCCCcchhhhhhcccc
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMP------------IDMNGQADCETYLHRIGRTG 68 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p------------~~~~~~~~~~~y~qr~GR~g 68 (118)
|+.++..++.++++.-..|..++++.|.++...+.+.++.+||.-+.. .+...-.+.....||.||+|
T Consensus 681 Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~g 760 (1282)
T KOG0921|consen 681 HSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAG 760 (1282)
T ss_pred hhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCc
Confidence 677777888888888889999999999999999888888877753321 11112236778899999999
Q ss_pred cCCCceEEEEEec
Q psy6850 69 RFGKCGIAINLVD 81 (118)
Q Consensus 69 R~~~~g~~~~~~~ 81 (118)
|. ++|.|..+++
T Consensus 761 rv-R~G~~f~lcs 772 (1282)
T KOG0921|consen 761 RV-RPGFCFHLCS 772 (1282)
T ss_pred ee-cccccccccH
Confidence 86 5788888775
No 165
>KOG1016|consensus
Probab=93.55 E-value=0.15 Score=42.82 Aligned_cols=72 Identities=19% Similarity=0.190 Sum_probs=59.9
Q ss_pred CCCCHHHHHHHHHHHhcC---CCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEE
Q psy6850 2 GKGPNTSSSSSLNSFTSC---KEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAIN 78 (118)
Q Consensus 2 g~l~~~~r~~~~~~F~~g---~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~ 78 (118)
|.-+.++|++.+++|.+- .+-+|+.|-..+.|+|+-+.+.+|.||.-| ++..-.|.+-|.-|.|+.-.|++
T Consensus 769 G~t~a~~rekLinqfN~e~~lsWlfllstrag~lGinLIsanr~~ifda~w------npchdaqavcRvyrYGQ~Kpcfv 842 (1387)
T KOG1016|consen 769 GTTSAADREKLINQFNSEPGLSWLFLLSTRAGSLGINLISANRCIIFDACW------NPCHDAQAVCRVYRYGQQKPCFV 842 (1387)
T ss_pred CCcccchHHHHHHhccCCCCceeeeeehhccccccceeeccceEEEEEeec------CccccchhhhhhhhhcCcCceeE
Confidence 456778999999999874 345889999999999999889999999999 88888898888889887555555
Q ss_pred E
Q psy6850 79 L 79 (118)
Q Consensus 79 ~ 79 (118)
+
T Consensus 843 Y 843 (1387)
T KOG1016|consen 843 Y 843 (1387)
T ss_pred E
Confidence 4
No 166
>PRK14873 primosome assembly protein PriA; Provisional
Probab=92.66 E-value=0.32 Score=39.94 Aligned_cols=45 Identities=13% Similarity=0.081 Sum_probs=39.7
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEec
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFD 46 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~ 46 (118)
|+++++.+|.+.+.+.++|+.+|+|.|-.+.. ..+++..+||..+
T Consensus 221 hS~l~~~~R~~~w~~~~~G~~~IViGtRSAvF-aP~~~LgLIIvdE 265 (665)
T PRK14873 221 SAGLGPADRYRRWLAVLRGQARVVVGTRSAVF-APVEDLGLVAIWD 265 (665)
T ss_pred CCCCCHHHHHHHHHHHhCCCCcEEEEcceeEE-eccCCCCEEEEEc
Confidence 99999999999999999999999999987554 5777888888754
No 167
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=91.97 E-value=0.26 Score=40.49 Aligned_cols=44 Identities=18% Similarity=0.297 Sum_probs=37.6
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccc-cccCcCCccEEEE
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLA-RGIDVEQVTIVIN 44 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~-~Gidi~~v~~VI~ 44 (118)
||+++..+|..+++...+|+.+|+|+|..+- ..+.+.++.+||.
T Consensus 345 ~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 345 TGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred cCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEEE
Confidence 7899999999999999999999999998443 3467888888774
No 168
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=91.54 E-value=0.39 Score=39.85 Aligned_cols=44 Identities=9% Similarity=0.001 Sum_probs=38.3
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINF 45 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~ 45 (118)
|++|++.+|.+.+.+.+.|+.+|+|.|-.+-- ..+++..+||..
T Consensus 277 HS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-~Pf~~LGLIIvD 320 (730)
T COG1198 277 HSGLSPGERYRVWRRARRGEARVVIGTRSALF-LPFKNLGLIIVD 320 (730)
T ss_pred cccCChHHHHHHHHHHhcCCceEEEEechhhc-CchhhccEEEEe
Confidence 99999999999999999999999999986443 567788888753
No 169
>PRK05580 primosome assembly protein PriA; Validated
Probab=91.09 E-value=0.43 Score=39.25 Aligned_cols=45 Identities=9% Similarity=0.051 Sum_probs=37.7
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEec
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFD 46 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~ 46 (118)
||+++..+|.+.+.+...|+.+|+|+|..... +.+.++.+||.-+
T Consensus 222 ~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~liVvDE 266 (679)
T PRK05580 222 HSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLIIVDE 266 (679)
T ss_pred ECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEEEEEC
Confidence 89999999999999999999999999985432 5667888887654
No 170
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.66 E-value=0.4 Score=38.10 Aligned_cols=45 Identities=9% Similarity=0.057 Sum_probs=37.7
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEec
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFD 46 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~ 46 (118)
||+++..+|.+++.+.+.|+.+|+|+|..+.. ..+.++.+||.-+
T Consensus 57 hs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 57 HSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIVDE 101 (505)
T ss_pred ECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEEEC
Confidence 89999999999999999999999999986443 4567888887643
No 171
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=89.35 E-value=0.57 Score=38.13 Aligned_cols=44 Identities=16% Similarity=0.292 Sum_probs=37.0
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCcccc-ccCcCCccEEEE
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLAR-GIDVEQVTIVIN 44 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~-Gidi~~v~~VI~ 44 (118)
||+++..+|..+++...+|+.+|+|+|..+-. .+.+.++.+||.
T Consensus 319 tg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 319 TGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVII 363 (630)
T ss_pred ecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEEE
Confidence 68999999999999999999999999985544 466778887764
No 172
>PRK09401 reverse gyrase; Reviewed
Probab=87.96 E-value=0.43 Score=41.63 Aligned_cols=39 Identities=31% Similarity=0.554 Sum_probs=28.0
Q ss_pred CcchhhhhhcccccCCC----ceEEEEEecCCcHHHHHHHHHHhC
Q psy6850 56 DCETYLHRIGRTGRFGK----CGIAINLVDEHSVGVLKDIEKHFG 96 (118)
Q Consensus 56 ~~~~y~qr~GR~gR~~~----~g~~~~~~~~~~~~~~~~~~~~~~ 96 (118)
+..+|+|..||+.|.-. .|.+++++. +...+..+.+.+.
T Consensus 518 d~~tYiqasGRtSrl~~gg~t~glsv~l~d--d~~~~~~l~~~~~ 560 (1176)
T PRK09401 518 DVTTYIQASGRTSRLYAGGLTKGLSVLLVD--DEKLFESLKKKLR 560 (1176)
T ss_pred CcchheecccchhcccCCCccceeEEEEec--CHHHHHHHHHHHH
Confidence 56689999999999532 788888875 4455566666554
No 173
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=87.39 E-value=0.3 Score=40.88 Aligned_cols=59 Identities=25% Similarity=0.258 Sum_probs=38.2
Q ss_pred CCC-cEEEEcCccccccCcC---Ccc--------EEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEecCC
Q psy6850 19 CKE-KVLITTNVLARGIDVE---QVT--------IVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLVDEH 83 (118)
Q Consensus 19 g~~-~iLv~T~~~~~Gidi~---~v~--------~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~~~~ 83 (118)
|+. -+=|||++++||.||. +.. .||--.-.. +..-=.|-.||+||.|.+|.+..|++-+
T Consensus 475 G~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhE------SRRIDnQLRGRsGRQGDpG~S~F~lSle 545 (822)
T COG0653 475 GQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHE------SRRIDNQLRGRAGRQGDPGSSRFYLSLE 545 (822)
T ss_pred CCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccch------hhHHHHHhhcccccCCCcchhhhhhhhH
Confidence 444 3569999999999973 211 222222222 2222337889999999999988887743
No 174
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=85.67 E-value=1.1 Score=38.25 Aligned_cols=44 Identities=18% Similarity=0.251 Sum_probs=36.1
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCcc-ccccCcCCccEEEE
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVL-ARGIDVEQVTIVIN 44 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~-~~Gidi~~v~~VI~ 44 (118)
||..+..++.++++.++.|+.+|+|+|..+ ...+.+.++.+||.
T Consensus 535 sg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 535 SRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred eccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEEe
Confidence 467788899999999999999999999843 34577788888765
No 175
>PRK10689 transcription-repair coupling factor; Provisional
Probab=81.61 E-value=2 Score=37.57 Aligned_cols=44 Identities=16% Similarity=0.162 Sum_probs=34.9
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCc-cccccCcCCccEEEE
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNV-LARGIDVEQVTIVIN 44 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~-~~~Gidi~~v~~VI~ 44 (118)
+|..+..++.++++..+.|.++|+|+|.- +...+.+.++.+||.
T Consensus 684 ~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 684 SRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred ECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEEE
Confidence 46778899999999999999999999974 333466678887764
No 176
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=81.01 E-value=2.7 Score=34.65 Aligned_cols=43 Identities=16% Similarity=0.281 Sum_probs=36.8
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEEcCccc-cccCcCCccEEEE
Q psy6850 2 GKGPNTSSSSSLNSFTSCKEKVLITTNVLA-RGIDVEQVTIVIN 44 (118)
Q Consensus 2 g~l~~~~r~~~~~~F~~g~~~iLv~T~~~~-~Gidi~~v~~VI~ 44 (118)
|.+..++|.+++++..+|+++++|.|-++- ..+++.+..+||.
T Consensus 347 G~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVIi 390 (677)
T COG1200 347 GSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVII 390 (677)
T ss_pred cccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEEEE
Confidence 778899999999999999999999999654 4578888877764
No 177
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=79.35 E-value=2.4 Score=37.18 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=26.4
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCc
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNV 29 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~ 29 (118)
||+++..++...++.+++|..+|||+|+-
T Consensus 159 ~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~ 187 (1171)
T TIGR01054 159 HSRLPTKEKKEFMERIENGDFDILITTTM 187 (1171)
T ss_pred cCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 79999999999999999999999999983
No 178
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=78.26 E-value=3.4 Score=36.04 Aligned_cols=40 Identities=15% Similarity=0.338 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEcC-ccccccCcCCccEEEE
Q psy6850 5 PNTSSSSSLNSFTSCKEKVLITTN-VLARGIDVEQVTIVIN 44 (118)
Q Consensus 5 ~~~~r~~~~~~F~~g~~~iLv~T~-~~~~Gidi~~v~~VI~ 44 (118)
+.+|+.++++..++|+++|+|.|- +++.++-+.++.++|.
T Consensus 682 s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlII 722 (1139)
T COG1197 682 SAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLII 722 (1139)
T ss_pred CHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEEE
Confidence 678999999999999999999997 6677788889988773
No 179
>KOG2340|consensus
Probab=77.75 E-value=9.6 Score=31.05 Aligned_cols=75 Identities=19% Similarity=0.160 Sum_probs=51.3
Q ss_pred HHHHHHHhcCCCcEEEEcCcc--ccccCcCCccEEEEecCCCCCCCCCCcchh---hhhhcccccCC----CceEEEEEe
Q psy6850 10 SSSLNSFTSCKEKVLITTNVL--ARGIDVEQVTIVINFDMPIDMNGQADCETY---LHRIGRTGRFG----KCGIAINLV 80 (118)
Q Consensus 10 ~~~~~~F~~g~~~iLv~T~~~--~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y---~qr~GR~gR~~----~~g~~~~~~ 80 (118)
.++=+-|-.|..++|+-|.-+ -+-.++.+|..||.|.+|. .|.-| +.+.+|+--.| ..-.|.+++
T Consensus 592 sRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqpP~------~P~FYsEiinm~~k~~~~gn~d~d~~t~~ily 665 (698)
T KOG2340|consen 592 SRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQPPN------NPHFYSEIINMSDKTTSQGNTDLDIFTVRILY 665 (698)
T ss_pred hHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecCCC------CcHHHHHHHhhhhhhhccCCccccceEEEEEe
Confidence 344566888999999999843 3347888999999999998 66555 44555554222 235677777
Q ss_pred cCCcHHHHHH
Q psy6850 81 DEHSVGVLKD 90 (118)
Q Consensus 81 ~~~~~~~~~~ 90 (118)
+..|.-.+..
T Consensus 666 tKyD~i~Le~ 675 (698)
T KOG2340|consen 666 TKYDRIRLEN 675 (698)
T ss_pred echhhHHHHH
Confidence 7776654433
No 180
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=74.67 E-value=15 Score=31.79 Aligned_cols=66 Identities=21% Similarity=0.396 Sum_probs=48.5
Q ss_pred HHHHHHHH--hcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCC----CceEEEEEec
Q psy6850 9 SSSSLNSF--TSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFG----KCGIAINLVD 81 (118)
Q Consensus 9 r~~~~~~F--~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~----~~g~~~~~~~ 81 (118)
+......| +....++||.+|++-.|.|.|.++.++ .|-|- ..-..+|.+.|+-|.- ..|.++.|+.
T Consensus 580 ~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~L------k~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 580 KKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPL------KYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred HhhhhhhhcCcCCCCCEEEEEccccccCCccccceEE-ecccc------ccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 34445553 345789999999999999999887543 45565 5568899999999853 2577777765
No 181
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=73.61 E-value=1.6 Score=37.27 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=20.5
Q ss_pred hhhhcccccCCCceEEEEEecCCcH
Q psy6850 61 LHRIGRTGRFGKCGIAINLVDEHSV 85 (118)
Q Consensus 61 ~qr~GR~gR~~~~g~~~~~~~~~~~ 85 (118)
.|-.||+||.|.+|.+-.|++-+|.
T Consensus 666 NQLRGRaGRQGDPGsSrFflSLEDd 690 (939)
T PRK12902 666 NQLRGRAGRQGDPGSTRFFLSLEDN 690 (939)
T ss_pred HHhhcccccCCCCCcceEEEEechH
Confidence 3666899999999999999985543
No 182
>PRK14701 reverse gyrase; Provisional
Probab=73.39 E-value=4.7 Score=36.69 Aligned_cols=29 Identities=14% Similarity=0.099 Sum_probs=27.0
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCc
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNV 29 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~ 29 (118)
||+++..++.+.++.+++|+.+|||+|+-
T Consensus 159 ~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 159 HSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred eCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 78999999999999999999999999984
No 183
>KOG1001|consensus
Probab=71.89 E-value=0.24 Score=40.70 Aligned_cols=69 Identities=16% Similarity=0.149 Sum_probs=58.2
Q ss_pred CCCCHHHHHHHHHHHhcC-CCcE-EEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEE
Q psy6850 2 GKGPNTSSSSSLNSFTSC-KEKV-LITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIA 76 (118)
Q Consensus 2 g~l~~~~r~~~~~~F~~g-~~~i-Lv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~ 76 (118)
|.|+...|.+.+..|..+ .+.+ +++..+...|+++-...+|+..|+=| ++..--|.+-|+.|-|+.-.+
T Consensus 571 g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~w------np~~eeQaidR~hrigq~k~v 641 (674)
T KOG1001|consen 571 GEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWW------NPAVEEQAIDRAHRIGQTKPV 641 (674)
T ss_pred hhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhc------ChHHHHHHHHHHHHhccccee
Confidence 678899999999999966 3444 47778888999999999999999999 999999999999998874433
No 184
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=70.25 E-value=19 Score=31.28 Aligned_cols=71 Identities=15% Similarity=0.190 Sum_probs=51.2
Q ss_pred CCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccC-----CC----ceEEEEEec-CCcHHHHH
Q psy6850 20 KEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRF-----GK----CGIAINLVD-EHSVGVLK 89 (118)
Q Consensus 20 ~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~-----~~----~g~~~~~~~-~~~~~~~~ 89 (118)
.++.+++-+++..|-|-|+|-.+.-+.-.. +...-.|.+||.-|. |. ..+.++++. ..+..+..
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~------s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~ 574 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSG------SETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFAS 574 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCC------chHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHH
Confidence 678999999999999999998777777555 778889999999874 21 123344443 55556666
Q ss_pred HHHHHhC
Q psy6850 90 DIEKHFG 96 (118)
Q Consensus 90 ~~~~~~~ 96 (118)
.|.+..+
T Consensus 575 ~LQ~EI~ 581 (986)
T PRK15483 575 KLVGEIN 581 (986)
T ss_pred HHHHHHH
Confidence 6666553
No 185
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=69.06 E-value=29 Score=28.02 Aligned_cols=92 Identities=16% Similarity=0.204 Sum_probs=53.3
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEEcC------ccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceE
Q psy6850 2 GKGPNTSSSSSLNSFTSCKEKVLITTN------VLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGI 75 (118)
Q Consensus 2 g~l~~~~r~~~~~~F~~g~~~iLv~T~------~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~ 75 (118)
|..++++|...+. +.+|+|+|+ +.+--+|+.++.++|.-...+-. ..-.|++-+-.--|....-.
T Consensus 94 Gev~p~~R~~~w~-----~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAv----GnyAYv~Va~~y~~~~k~~~ 164 (542)
T COG1111 94 GEVRPEEREELWA-----KKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAV----GNYAYVFVAKEYLRSAKNPL 164 (542)
T ss_pred CCCChHHHHHHHh-----hCCEEEeccHHHHhHHhcCccChHHceEEEechhhhcc----CcchHHHHHHHHHHhccCce
Confidence 6778888887765 467999998 33333899999888764433300 22345555443334433322
Q ss_pred EEEE--ecCCcHHHHHHHHHHhCCCceec
Q psy6850 76 AINL--VDEHSVGVLKDIEKHFGKKIELL 102 (118)
Q Consensus 76 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 102 (118)
.+-+ -...+...++++.+.+++.--++
T Consensus 165 ilgLTASPGs~~ekI~eV~~nLgIe~vev 193 (542)
T COG1111 165 ILGLTASPGSDLEKIQEVVENLGIEKVEV 193 (542)
T ss_pred EEEEecCCCCCHHHHHHHHHhCCcceEEE
Confidence 3333 22556677777777665543333
No 186
>PF10657 RC-P840_PscD: Photosystem P840 reaction centre protein PscD; InterPro: IPR019608 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. The photosynthetic reaction centres (RCs) of aerotolerant organisms contain a heterodimeric core, built up of two strongly homologous polypeptides each of which contributes five transmembrane peptide helices to hold a pseudo-symmetric double set of redox components. Two molecules of PscD are housed within a subunit. PscD may be involved in stabilising the PscB component since it is found to co-precipitate with FMO (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be involved in the interaction with ferredoxin [].
Probab=65.07 E-value=13 Score=24.24 Aligned_cols=37 Identities=19% Similarity=0.342 Sum_probs=29.3
Q ss_pred HHHHHHHhcCCCcEEEEcCccccccCcC------CccEEEEec
Q psy6850 10 SSSLNSFTSCKEKVLITTNVLARGIDVE------QVTIVINFD 46 (118)
Q Consensus 10 ~~~~~~F~~g~~~iLv~T~~~~~Gidi~------~v~~VI~~~ 46 (118)
.+.+++..+|++.+.|-|.--.-+||++ .=+.||.||
T Consensus 64 ~emi~~l~~geIel~VLttqpDIai~l~~kVldnEnRYViDFD 106 (144)
T PF10657_consen 64 PEMIDKLISGEIELFVLTTQPDIAINLQQKVLDNENRYVIDFD 106 (144)
T ss_pred HHHHHHHhcCceEEEEEccCCCeeechhhhhhcccceEEEecc
Confidence 4688999999999999988777777765 335788877
No 187
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=63.27 E-value=9.6 Score=30.38 Aligned_cols=40 Identities=18% Similarity=0.328 Sum_probs=28.9
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcC-----ccccc-cCcCCccEEEE
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTN-----VLARG-IDVEQVTIVIN 44 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~-----~~~~G-idi~~v~~VI~ 44 (118)
.|+++...+.+.++ .| .+|||+|+ .+.++ +++..+.++|.
T Consensus 135 ~GG~~~~~q~~~l~---~~-~~ivVaTPGRllD~i~~~~l~l~~v~~lVl 180 (513)
T COG0513 135 YGGVSIRKQIEALK---RG-VDIVVATPGRLLDLIKRGKLDLSGVETLVL 180 (513)
T ss_pred ECCCCHHHHHHHHh---cC-CCEEEECccHHHHHHHcCCcchhhcCEEEe
Confidence 36777776665444 46 99999999 45555 88888888764
No 188
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=59.23 E-value=13 Score=27.56 Aligned_cols=28 Identities=11% Similarity=0.088 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEcCcccc
Q psy6850 5 PNTSSSSSLNSFTSCKEKVLITTNVLAR 32 (118)
Q Consensus 5 ~~~~r~~~~~~F~~g~~~iLv~T~~~~~ 32 (118)
++++|+..++.+++|.++++|+||=+.-
T Consensus 219 ~~~d~~~L~~~l~~G~id~~i~SDHaP~ 246 (335)
T cd01294 219 RPEDREALRKAATSGHPKFFLGSDSAPH 246 (335)
T ss_pred CHHHHHHHHHHHHcCCCCeEEECCCCCC
Confidence 4689999999999999999999995443
No 189
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=57.60 E-value=28 Score=29.95 Aligned_cols=71 Identities=20% Similarity=0.252 Sum_probs=52.4
Q ss_pred CCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCC--CceE-----------EEEEecCCcHH
Q psy6850 20 KEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFG--KCGI-----------AINLVDEHSVG 86 (118)
Q Consensus 20 ~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~--~~g~-----------~~~~~~~~~~~ 86 (118)
..+.|.+-.++-+|-|=|+|=.+.-+.-.. +..+=.|.+||.-|.. ..|. -..++...+..
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~------SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~ 556 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSG------SEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKD 556 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCCC------cchHHHHHhccceeeeeccccceecccccccceEEEEecccHHH
Confidence 478999999999999999998777776665 8888899999998842 2232 23345566777
Q ss_pred HHHHHHHHhC
Q psy6850 87 VLKDIEKHFG 96 (118)
Q Consensus 87 ~~~~~~~~~~ 96 (118)
+++.|.+...
T Consensus 557 Fv~~LqkEI~ 566 (985)
T COG3587 557 FVKALQKEIN 566 (985)
T ss_pred HHHHHHHHHH
Confidence 7777766543
No 190
>PF01589 Alpha_E1_glycop: Alphavirus E1 glycoprotein; InterPro: IPR002548 Alphaviruses are enveloped RNA viruses that use arthropods such as mosquitoes for transmission to their vertebrate hosts, and include Semliki Forest and Sindbis viruses []. Alphaviruses consist of three structural proteins: the core nucleocapsid protein C, and the envelope proteins P62 and E1 that associate as a heterodimer. The viral membrane-anchored surface glycoproteins are responsible for receptor recognition and entry into target cells through membrane fusion. The proteolytic maturation of P62 into E2 (IPR000936 from INTERPRO) and E3 (IPR002533 from INTERPRO) causes a change in the viral surface. Together the E1, E2, and sometimes E3, glycoprotein "spikes" form an E1/E2 dimer or an E1/E2/E3 trimer, where E2 extends from the centre to the vertices, E1 fills the space between the vertices, and E3, if present, is at the distal end of the spike []. Upon exposure of the virus to the acidity of the endosome, E1 dissociates from E2 to form an E1 homotrimer, which is necessary for the fusion step to drive the cellular and viral membranes together. The alphaviral glycoprotein E1 is a class II viral fusion protein, which is structurally different from the class I fusion proteins found in influenza virus and HIV. The structure of the Semliki Forest virus revealed a structure that is similar to that of flaviviral glycoprotein E, with three structural domains in the same primary sequence arrangement []. This entry represents all three domains of the alphaviral E1 glycoprotein.; GO: 0004252 serine-type endopeptidase activity, 0019028 viral capsid, 0055036 virion membrane; PDB: 2YEW_L 1LD4_P 1Z8Y_K 3MUU_B 3N44_F 2XFB_F 3N42_F 2XFC_H 3N40_F 3N41_F ....
Probab=52.57 E-value=10 Score=29.88 Aligned_cols=12 Identities=33% Similarity=0.379 Sum_probs=5.3
Q ss_pred EEEEecCCCCCC
Q psy6850 41 IVINFDMPIDMN 52 (118)
Q Consensus 41 ~VI~~~~p~~~~ 52 (118)
-|.|||+|.+++
T Consensus 247 eVYNyDfP~YGa 258 (502)
T PF01589_consen 247 EVYNYDFPPYGA 258 (502)
T ss_dssp EEEE----TTTC
T ss_pred eeeccccccccC
Confidence 457999998665
No 191
>KOG0701|consensus
Probab=51.48 E-value=5.3 Score=36.20 Aligned_cols=56 Identities=14% Similarity=0.177 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccc
Q psy6850 7 TSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTG 68 (118)
Q Consensus 7 ~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~g 68 (118)
..|.....+|..+++..+++|.....|.|+-.+..|+.++... +...+.|..|++.
T Consensus 708 ~~rn~~~~~~~~~~v~~~~~pss~~~g~~~~~~~~v~~~~~~~------~i~~~~q~~~~~~ 763 (1606)
T KOG0701|consen 708 MYRNDDQPQFYVAEVLPLLAPSSLFPGLDYETFNEVYRFKYAL------TITSLNQSLLDVD 763 (1606)
T ss_pred hhhcccccceeeeeeeeeccchhcCCCcchheeeeeeeccccc------hhhhccccccccc
Confidence 3566667778888999999999999999999999999999988 8999999998764
No 192
>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]
Probab=50.87 E-value=12 Score=27.88 Aligned_cols=20 Identities=25% Similarity=0.134 Sum_probs=14.7
Q ss_pred CCcEEEEcCccccccCcCCc
Q psy6850 20 KEKVLITTNVLARGIDVEQV 39 (118)
Q Consensus 20 ~~~iLv~T~~~~~Gidi~~v 39 (118)
+.+|||..|--..=||+|++
T Consensus 230 efNIlV~~dg~~~vIDwPQ~ 249 (304)
T COG0478 230 EFNILVTEDGDIVVIDWPQA 249 (304)
T ss_pred hheEEEecCCCEEEEeCccc
Confidence 57899998754555788776
No 193
>KOG0298|consensus
Probab=44.52 E-value=13 Score=33.08 Aligned_cols=55 Identities=20% Similarity=0.289 Sum_probs=44.6
Q ss_pred HHHHHHhcCCCc-EEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCc
Q psy6850 11 SSLNSFTSCKEK-VLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKC 73 (118)
Q Consensus 11 ~~~~~F~~g~~~-iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~ 73 (118)
..+..|++ ++ +|+-+...+.|+|+-+..+|+..++-. ++..-.|.+||.-|.|+.
T Consensus 1259 dc~~~fk~--I~clll~~~~~~~GLNL~eA~Hvfl~ePiL------N~~~E~QAigRvhRiGQ~ 1314 (1394)
T KOG0298|consen 1259 DCIICFKS--IDCLLLFVSKGSKGLNLIEATHVFLVEPIL------NPGDEAQAIGRVHRIGQK 1314 (1394)
T ss_pred hhhhhccc--ceEEEEEeccCcccccHHhhhhhheecccc------CchHHHhhhhhhhhcccc
Confidence 34445544 43 557788889999999999999999877 888999999999999874
No 194
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=44.36 E-value=16 Score=17.70 Aligned_cols=12 Identities=25% Similarity=0.263 Sum_probs=8.5
Q ss_pred hcCCCcEEEEcC
Q psy6850 17 TSCKEKVLITTN 28 (118)
Q Consensus 17 ~~g~~~iLv~T~ 28 (118)
+.|.++|.|+|+
T Consensus 1 r~g~LqI~ISTn 12 (30)
T PF14824_consen 1 RRGPLQIAISTN 12 (30)
T ss_dssp --TTEEEEEEES
T ss_pred CCCCeEEEEECC
Confidence 457788888887
No 195
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=43.49 E-value=35 Score=27.56 Aligned_cols=28 Identities=7% Similarity=0.000 Sum_probs=25.9
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcC
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTN 28 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~ 28 (118)
||+++..++..++.....|.+++|++|+
T Consensus 84 ~s~~~~~~~~~~~~~l~~~~~~il~~tp 111 (591)
T TIGR01389 84 NSTLSAKEQQDIEKALVNGELKLLYVAP 111 (591)
T ss_pred eCCCCHHHHHHHHHHHhCCCCCEEEECh
Confidence 6889999999999999999999999987
No 196
>PF09010 AsiA: Anti-Sigma Factor A; InterPro: IPR015100 Anti-sigma factor A is a transcriptional inhibitor that inhibits sigma 70-directed transcription by weakening its interaction with the core of the host's RNA polymerase. It is an all-helical protein, composed of six helical segments and intervening loops and turns, as well as a helix-turn-helix DNA binding motif, although neither free anti-sigma factor nor anti-sigma factor bound to sigma-70 has been shown to interact directly with DNA. In solution, the protein forms a symmetric dimer of small (10.59 kDa) protomers, which are composed of helix and coil regions and are devoid of beta-strand/sheet secondary structural elements []. ; PDB: 1TKV_A 1JR5_B 1TLH_A 1TL6_A.
Probab=43.03 E-value=10 Score=23.19 Aligned_cols=19 Identities=5% Similarity=0.120 Sum_probs=15.3
Q ss_pred CCCCHHHHHHHHHHHhcCC
Q psy6850 2 GKGPNTSSSSSLNSFTSCK 20 (118)
Q Consensus 2 g~l~~~~r~~~~~~F~~g~ 20 (118)
++|++++|.+++++|..|-
T Consensus 60 ~~lt~~ek~elieeFn~G~ 78 (91)
T PF09010_consen 60 KRLTQEEKEELIEEFNEGH 78 (91)
T ss_dssp HTS-HHHHHHHHHHSHHHH
T ss_pred HHcCHHHHHHHHHHHhhhh
Confidence 3689999999999998764
No 197
>PTZ00300 pyruvate kinase; Provisional
Probab=42.87 E-value=22 Score=28.13 Aligned_cols=54 Identities=15% Similarity=0.172 Sum_probs=28.3
Q ss_pred ccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEec-CCcHHHHHHHHHH
Q psy6850 31 ARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLVD-EHSVGVLKDIEKH 94 (118)
Q Consensus 31 ~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~~-~~~~~~~~~~~~~ 94 (118)
.+|+|+|++. +++|. -.+.-..-+.++--.|-.+++++|+. .++...++++...
T Consensus 130 ~kgvnlp~~~----~~l~~------ltekD~~dI~~ald~gvd~I~~SfVrsaeDv~~vr~~l~~ 184 (454)
T PTZ00300 130 RRGVNLPGCD----VDLPA------VSAKDCADLQFGVEQGVDMIFASFIRSAEQVGEVRKALGA 184 (454)
T ss_pred CCccccCCCc----cCCCC------CChhhHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHh
Confidence 3577777754 24443 11111222334445667889999986 3345545554443
No 198
>PRK05451 dihydroorotase; Provisional
Probab=42.18 E-value=36 Score=25.58 Aligned_cols=27 Identities=19% Similarity=0.145 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEcCccc
Q psy6850 5 PNTSSSSSLNSFTSCKEKVLITTNVLA 31 (118)
Q Consensus 5 ~~~~r~~~~~~F~~g~~~iLv~T~~~~ 31 (118)
+.++|+..++.+++|.++++|+||=+.
T Consensus 225 ~~~d~~aLw~~l~~G~Id~~i~SDHaP 251 (345)
T PRK05451 225 RETHRQALREAATSGNPKFFLGTDSAP 251 (345)
T ss_pred CHHHHHHHHHHHHcCCCCEEEeCCCCC
Confidence 468999999999999999889999544
No 199
>PRK05826 pyruvate kinase; Provisional
Probab=39.18 E-value=23 Score=28.09 Aligned_cols=51 Identities=18% Similarity=0.214 Sum_probs=28.4
Q ss_pred hcccccCCCceEEEEEec-CCcHHHHHHHHHHhCC-CceecC-CCChhhhhhcc
Q psy6850 64 IGRTGRFGKCGIAINLVD-EHSVGVLKDIEKHFGK-KIELLD-TEDIDDEGNFR 114 (118)
Q Consensus 64 ~GR~gR~~~~g~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~ 114 (118)
+.++-..|-.|+++.|+. .++...++++....+. .+..+. .+..+.+++++
T Consensus 179 i~~ald~g~d~I~~sfV~saedv~~l~~~l~~~~~~~~~iiakIEt~eav~nld 232 (465)
T PRK05826 179 IKFAAEQGVDYIAVSFVRSAEDVEEARRLLREAGCPHAKIIAKIERAEAVDNID 232 (465)
T ss_pred HHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHcCCcCceEEEEEcCHHHHHhHH
Confidence 345556677899999987 4455555555555444 333222 34444444443
No 200
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=39.11 E-value=23 Score=22.68 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=19.9
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEcC
Q psy6850 3 KGPNTSSSSSLNSFTSCKEKVLITTN 28 (118)
Q Consensus 3 ~l~~~~r~~~~~~F~~g~~~iLv~T~ 28 (118)
.|+.++|.+.++++-+.+...+|.|.
T Consensus 64 ~l~~~~r~~~l~~l~~~~~P~iIvt~ 89 (127)
T PF02603_consen 64 SLDEEERKERLEKLFSYNPPCIIVTR 89 (127)
T ss_dssp CS-HHHHCCHHHHHCTTT-S-EEEET
T ss_pred HCCHHHHHHHHHHHhCCCCCEEEEEC
Confidence 58899999999999999888777765
No 201
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=38.90 E-value=37 Score=28.96 Aligned_cols=60 Identities=20% Similarity=0.244 Sum_probs=36.4
Q ss_pred CCCcEEEEcCccccccCcCCcc--EEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEec
Q psy6850 19 CKEKVLITTNVLARGIDVEQVT--IVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLVD 81 (118)
Q Consensus 19 g~~~iLv~T~~~~~Gidi~~v~--~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~~ 81 (118)
++.+|++=|+++.-|+++.... .+.-|=-|. ..--+..+..|++||.-... ....++++.
T Consensus 325 ~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk~~--~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d 386 (824)
T PF02399_consen 325 KKYDVVIYTPVITVGLSFEEKHFDSMFAYVKPM--SYGPDMVSVYQMLGRVRSLL-DNEIYVYID 386 (824)
T ss_pred cceeEEEEeceEEEEeccchhhceEEEEEecCC--CCCCcHHHHHHHHHHHHhhc-cCeEEEEEe
Confidence 4678999999999999987543 333331111 00004456889999985443 445555555
No 202
>TIGR00856 pyrC_dimer dihydroorotase, homodimeric type. This homodimeric form of dihydroorotase is less common in microbial genomes than a related dihydroorotase that appears in a complex with aspartyltranscarbamoylase or as a homologous domain in multifunctional proteins of pyrimidine biosynthesis in higher eukaryotes.
Probab=38.56 E-value=46 Score=25.09 Aligned_cols=28 Identities=18% Similarity=0.114 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEcCcccc
Q psy6850 5 PNTSSSSSLNSFTSCKEKVLITTNVLAR 32 (118)
Q Consensus 5 ~~~~r~~~~~~F~~g~~~iLv~T~~~~~ 32 (118)
+.++|+..++.+++|.++++|+||=+..
T Consensus 222 ~~~d~~aL~~~l~~G~id~~i~SDHaP~ 249 (341)
T TIGR00856 222 RNIHQQALLELAASGFPKFFLGTDSAPH 249 (341)
T ss_pred CHHHHHHHHHHHHcCCCCEEEeCCCCCC
Confidence 5688999999999999998899995544
No 203
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=35.79 E-value=52 Score=25.76 Aligned_cols=29 Identities=17% Similarity=0.150 Sum_probs=24.9
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCc
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNV 29 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~ 29 (118)
+|+.+..++..++.+.+.++.+|+++|+-
T Consensus 82 ~~~~~~~~~~~i~~~~~~~~~~il~~TPe 110 (470)
T TIGR00614 82 NSSQSKEQQKNVLTDLKDGKIKLLYVTPE 110 (470)
T ss_pred eCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 35677888899999999999999999983
No 204
>KOG0327|consensus
Probab=32.82 E-value=63 Score=25.15 Aligned_cols=66 Identities=9% Similarity=-0.081 Sum_probs=41.0
Q ss_pred HHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEecCCcH
Q psy6850 13 LNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLVDEHSV 85 (118)
Q Consensus 13 ~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~~~~~~ 85 (118)
..-++...+.+..|+.-...+.+-..+..+.++-... ++..+..++.|. .....++-+.+..+.+.
T Consensus 115 ~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvG------TpgrV~dml~~~-~l~~~~iKmfvlDEaDE 180 (397)
T KOG0327|consen 115 RALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVG------TPGRVFDMLNRG-SLSTDGIKMFVLDEADE 180 (397)
T ss_pred HhhhcccceeeeeecCcccchhhhhhhhccCceeecC------CchhHHHhhccc-cccccceeEEeecchHh
Confidence 4444456677777777555555544455555555565 777888888765 56667777666665443
No 205
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=32.44 E-value=59 Score=26.77 Aligned_cols=28 Identities=18% Similarity=0.135 Sum_probs=25.8
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcC
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTN 28 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~ 28 (118)
|+.|+.++|..++..+..|++++|.-++
T Consensus 88 nS~l~~~e~~~v~~~l~~g~~klLyisP 115 (590)
T COG0514 88 NSTLSREERQQVLNQLKSGQLKLLYISP 115 (590)
T ss_pred hcccCHHHHHHHHHHHhcCceeEEEECc
Confidence 5789999999999999999999997777
No 206
>PF07208 DUF1414: Protein of unknown function (DUF1414); InterPro: IPR009857 This family consists of several hypothetical bacterial proteins of around 70 residues in length. Members of this family are often referred to as YejL. The function of this family is unknown.; PDB: 2JPQ_A 2JUZ_B 2JUW_B 2QTI_A 2OTA_A 2JR2_A 2JRX_A.
Probab=32.11 E-value=52 Score=17.37 Aligned_cols=16 Identities=13% Similarity=0.235 Sum_probs=13.0
Q ss_pred CCCHHHHHHHHHHHhc
Q psy6850 3 KGPNTSSSSSLNSFTS 18 (118)
Q Consensus 3 ~l~~~~r~~~~~~F~~ 18 (118)
+.++++|..+.++|..
T Consensus 23 ~V~~~qR~~iAe~Fa~ 38 (44)
T PF07208_consen 23 SVPPAQRQAIAEKFAQ 38 (44)
T ss_dssp CS-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5689999999999964
No 207
>PF07835 COX4_pro_2: Bacterial aa3 type cytochrome c oxidase subunit IV; InterPro: IPR012422 Bacterial cytochrome c oxidase is found bound to the to the cell membrane, where it is involved in the generation of the transmembrane proton electrochemical gradient. It is composed of four subunits. Subunit IV consists of one transmembrane helix that does not interact directly with the other subunits, but maintains its position by indirect contacts via phospholipid molecules found in the structure. The function of subunit IV is as yet unknown []. ; PDB: 1QLE_D 1M57_J 1M56_J.
Probab=31.55 E-value=52 Score=17.24 Aligned_cols=17 Identities=12% Similarity=0.243 Sum_probs=12.5
Q ss_pred CCCCHHHHHHHHHHHhc
Q psy6850 2 GKGPNTSSSSSLNSFTS 18 (118)
Q Consensus 2 g~l~~~~r~~~~~~F~~ 18 (118)
|+|+-.++++.++-|-.
T Consensus 7 g~MD~~~he~Ty~gFi~ 23 (44)
T PF07835_consen 7 GEMDIAEHEKTYDGFIK 23 (44)
T ss_dssp T-S--HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 88999999999999865
No 208
>KOG1067|consensus
Probab=31.35 E-value=49 Score=27.31 Aligned_cols=35 Identities=17% Similarity=0.433 Sum_probs=23.0
Q ss_pred HHhcCCCcEEEE--cCccccccCcC-------CccEEEEecCCC
Q psy6850 15 SFTSCKEKVLIT--TNVLARGIDVE-------QVTIVINFDMPI 49 (118)
Q Consensus 15 ~F~~g~~~iLv~--T~~~~~Gidi~-------~v~~VI~~~~p~ 49 (118)
-|..|+.++|.+ -+..+.++.+. ..++..+|.+|+
T Consensus 386 LFqRGqTQvlctVtl~s~e~a~klD~l~~~~~~~~FmLhY~FPP 429 (760)
T KOG1067|consen 386 LFQRGQTQVLCTVTLDSLESAQKLDSLIGPDNGINFMLHYEFPP 429 (760)
T ss_pred hhhcCceeEEEEEEcCCHHHhhhhhhhccCccCceEEEEeccCC
Confidence 477888888743 34444443332 447899999998
No 209
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=30.80 E-value=93 Score=23.43 Aligned_cols=32 Identities=16% Similarity=0.242 Sum_probs=27.0
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCC
Q psy6850 3 KGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQ 38 (118)
Q Consensus 3 ~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~ 38 (118)
.|+.++|.+.++++-+-+...+|.|+ |..+|.
T Consensus 65 ~l~~~~r~~~~~~l~~~~~P~iIvt~----~~~~p~ 96 (308)
T PRK05428 65 QLSEEERKERLKKLFSLEPPCIIVTR----GLEPPP 96 (308)
T ss_pred hCCHHHHHHHHHHHhCCCCCEEEEEC----cCCCCH
Confidence 58999999999999999999888877 666653
No 210
>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis]
Probab=27.43 E-value=72 Score=26.75 Aligned_cols=38 Identities=16% Similarity=0.306 Sum_probs=23.1
Q ss_pred HHHhcCCCcEEEEcCccccc----cCcC----CccEEEEecCCCCC
Q psy6850 14 NSFTSCKEKVLITTNVLARG----IDVE----QVTIVINFDMPIDM 51 (118)
Q Consensus 14 ~~F~~g~~~iLv~T~~~~~G----idi~----~v~~VI~~~~p~~~ 51 (118)
.-|..|+.+.|+++.....+ +|.- .-++..||++|.+.
T Consensus 339 ~LFtRGeTQal~v~TLG~~~d~Qvid~l~~e~~krfm~hYNFPp~S 384 (692)
T COG1185 339 ALFTRGETQALVVVTLGTPRDAQVIDILEGEYKKRFLLHYNFPPFS 384 (692)
T ss_pred hhhccCCCcceEEEEcCCcchhhhhhhccchhhhheeeeccCCCCC
Confidence 34778888888666543321 2221 23477899999733
No 211
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=27.32 E-value=1.1e+02 Score=22.91 Aligned_cols=31 Identities=6% Similarity=0.170 Sum_probs=25.8
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcC
Q psy6850 3 KGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVE 37 (118)
Q Consensus 3 ~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~ 37 (118)
.+++++|.+.++++-+.+...+|.|. |...|
T Consensus 65 ~l~~e~~~~~~~~~~~~~~P~iIvt~----~~~~p 95 (304)
T TIGR00679 65 QLPEEEQKQIIHNLLTLNPPAIILSK----SFTDP 95 (304)
T ss_pred hCCHHHHHHHHHHHhCCCCCEEEEEC----cCCCC
Confidence 58899999999999999998888776 55554
No 212
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=26.79 E-value=80 Score=22.96 Aligned_cols=31 Identities=26% Similarity=0.279 Sum_probs=21.9
Q ss_pred HHHHHHHHHHh---cC-CCcEEEEcCccccccCcC
Q psy6850 7 TSSSSSLNSFT---SC-KEKVLITTNVLARGIDVE 37 (118)
Q Consensus 7 ~~r~~~~~~F~---~g-~~~iLv~T~~~~~Gidi~ 37 (118)
-|+.+-+++.| .| ++.+.++.++-+.|+|-|
T Consensus 198 LE~~E~LEQLR~Le~G~kI~v~i~~~~p~~gVDT~ 232 (247)
T COG1212 198 LEKIESLEQLRVLENGEKIHVEIVKEVPSIGVDTP 232 (247)
T ss_pred hHHHHHHHHHHHHHcCCeeEEEEeccCCCCCCCCH
Confidence 34444444444 56 789999999988999965
No 213
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=25.83 E-value=1.1e+02 Score=20.52 Aligned_cols=27 Identities=22% Similarity=0.437 Sum_probs=17.4
Q ss_pred CCCcEEEEcC-----ccccc-cCcCCccEEEEe
Q psy6850 19 CKEKVLITTN-----VLARG-IDVEQVTIVINF 45 (118)
Q Consensus 19 g~~~iLv~T~-----~~~~G-idi~~v~~VI~~ 45 (118)
+...|+|+|. .+..+ .+++++.++|.=
T Consensus 118 ~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvD 150 (203)
T cd00268 118 RGPHIVVATPGRLLDLLERGKLDLSKVKYLVLD 150 (203)
T ss_pred CCCCEEEEChHHHHHHHHcCCCChhhCCEEEEe
Confidence 5678999995 22222 566777777653
No 214
>PTZ00365 60S ribosomal protein L7Ae-like; Provisional
Probab=25.42 E-value=1.8e+02 Score=21.50 Aligned_cols=78 Identities=15% Similarity=0.095 Sum_probs=41.9
Q ss_pred HHHHHHhcCCCc-EEEEcCccccccCc--C------CccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEec
Q psy6850 11 SSLNSFTSCKEK-VLITTNVLARGIDV--E------QVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLVD 81 (118)
Q Consensus 11 ~~~~~F~~g~~~-iLv~T~~~~~Gidi--~------~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~~ 81 (118)
.+....+.++.. ||||.|+-..-+-. | +|.+++.+ +.+.+=+.+|+. ...-++++-+.
T Consensus 139 ~VtklIekkKAkLVIIA~DVsP~t~kk~LP~LC~k~~VPY~iv~----------sK~eLG~AIGkk---traVVAItdV~ 205 (266)
T PTZ00365 139 HVTDLVEYKKAKLVVIAHDVDPIELVCFLPALCRKKEVPYCIIK----------GKSRLGKLVHQK---TAAVVAIDNVR 205 (266)
T ss_pred HHHHHHHhCCccEEEEeCCCCHHHHHHHHHHHHhccCCCEEEEC----------CHHHHHHHhCCC---CceEEEecccC
Confidence 344555567666 66888864433211 1 23333322 333343444432 22455666666
Q ss_pred CCcHHHHHHHHHHhCCCcee
Q psy6850 82 EHSVGVLKDIEKHFGKKIEL 101 (118)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~ 101 (118)
.+|...+..+.+.....+.+
T Consensus 206 ~EDk~~l~~lv~~~~~~~nd 225 (266)
T PTZ00365 206 KEDQAEFDNLCKNFRAMFND 225 (266)
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 78888888887776666554
No 215
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=25.00 E-value=41 Score=29.14 Aligned_cols=19 Identities=37% Similarity=0.615 Sum_probs=15.9
Q ss_pred cCCC-cEEEEcCccccccCc
Q psy6850 18 SCKE-KVLITTNVLARGIDV 36 (118)
Q Consensus 18 ~g~~-~iLv~T~~~~~Gidi 36 (118)
+|+. .|-|||++++||.||
T Consensus 486 AG~~GaVTIATNMAGRGTDI 505 (939)
T PRK12902 486 AGRKGAVTIATNMAGRGTDI 505 (939)
T ss_pred cCCCCcEEEeccCCCCCcCE
Confidence 5644 588999999999997
No 216
>COG5435 Uncharacterized conserved protein [Function unknown]
Probab=25.00 E-value=79 Score=21.17 Aligned_cols=43 Identities=14% Similarity=0.163 Sum_probs=29.5
Q ss_pred HHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhh
Q psy6850 14 NSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRI 64 (118)
Q Consensus 14 ~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~ 64 (118)
+.|.+..++|++.++.-.. ...+||.-|.+.-.. ...+|++|-
T Consensus 15 ~~w~DrSvNvf~~~~~gt~-----~~sfvIsRd~~~~g~---~~~~y~~rq 57 (147)
T COG5435 15 AAWQDRSVNVFVSGDNGTS-----GFSFVISRDPLEPGD---TFPEYVQRQ 57 (147)
T ss_pred chhccceEEEEEecCCCcc-----eeEEEEecCCCCCCC---cHHHHHHHH
Confidence 3577778899988775433 456788888765333 677888764
No 217
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=24.39 E-value=84 Score=20.83 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=17.6
Q ss_pred HHHHHHHHHhcCCCcEEEEcCcc
Q psy6850 8 SSSSSLNSFTSCKEKVLITTNVL 30 (118)
Q Consensus 8 ~r~~~~~~F~~g~~~iLv~T~~~ 30 (118)
.|..+++...+--..+|||||+.
T Consensus 64 ~~~evi~~I~~~G~PviVAtDV~ 86 (138)
T PF04312_consen 64 SRSEVIEWISEYGKPVIVATDVS 86 (138)
T ss_pred CHHHHHHHHHHcCCEEEEEecCC
Confidence 35667777777778899999963
No 218
>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A ....
Probab=23.20 E-value=47 Score=23.03 Aligned_cols=19 Identities=16% Similarity=0.366 Sum_probs=12.6
Q ss_pred HHHHHHHhcCCCcEEEEcC
Q psy6850 10 SSSLNSFTSCKEKVLITTN 28 (118)
Q Consensus 10 ~~~~~~F~~g~~~iLv~T~ 28 (118)
.++++.|....++++|.||
T Consensus 56 ~~~l~n~~~~~v~v~VVTD 74 (182)
T PF00390_consen 56 EEILRNWPERDVRVIVVTD 74 (182)
T ss_dssp HHHHTTSS-SS--EEEEE-
T ss_pred HHHHHhhhccCceEEEEeC
Confidence 4677888888999999999
No 219
>PRK07369 dihydroorotase; Provisional
Probab=23.16 E-value=1.1e+02 Score=23.80 Aligned_cols=27 Identities=4% Similarity=-0.009 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEcCcccc
Q psy6850 5 PNTSSSSSLNSFTSCKEKVLITTNVLAR 32 (118)
Q Consensus 5 ~~~~r~~~~~~F~~g~~~iLv~T~~~~~ 32 (118)
++++|+..++.+++|.++ +|+||=+..
T Consensus 285 ~~~d~~aL~~~l~~G~Id-~i~SDHaP~ 311 (418)
T PRK07369 285 NPSDRQALIEGVRTGVID-AIAIDHAPY 311 (418)
T ss_pred CHHHHHHHHHHHhcCCCC-EEEcCCCCC
Confidence 578999999999999999 778885543
No 220
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=22.50 E-value=55 Score=26.29 Aligned_cols=59 Identities=20% Similarity=0.404 Sum_probs=31.8
Q ss_pred CcCCccEEEEec-----CCCCCCCCCCcchhhhhhcccccCC-CceEEEEEecCCcHHHHHHHHHHhCCCc
Q psy6850 35 DVEQVTIVINFD-----MPIDMNGQADCETYLHRIGRTGRFG-KCGIAINLVDEHSVGVLKDIEKHFGKKI 99 (118)
Q Consensus 35 di~~v~~VI~~~-----~p~~~~~~~~~~~y~qr~GR~gR~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (118)
|+..-.+|+.|| +.. .+..+++++-..-|.- .+|+.+.||+..-...-..+..+++.++
T Consensus 251 D~dkPklVfFfDEAHLLF~d------a~kall~~ieqvvrLIRSKGVGv~fvTQ~P~DiP~~VL~QLGnrI 315 (502)
T PF05872_consen 251 DLDKPKLVFFFDEAHLLFND------APKALLDKIEQVVRLIRSKGVGVYFVTQNPTDIPDDVLGQLGNRI 315 (502)
T ss_pred CCCCceEEEEEechhhhhcC------CCHHHHHHHHHHHHHhhccCceEEEEeCCCCCCCHHHHHhhhhHH
Confidence 444455777776 222 4556666666555443 3688899998332222234444444433
No 221
>KOG0202|consensus
Probab=22.25 E-value=4.9e+02 Score=22.92 Aligned_cols=83 Identities=16% Similarity=0.183 Sum_probs=53.2
Q ss_pred CCHHHHHHHHHHHhc---CCCcEE-EEcCcccc-----------------ccCcCCccEEEEecCCCCCCCCCCcchhhh
Q psy6850 4 GPNTSSSSSLNSFTS---CKEKVL-ITTNVLAR-----------------GIDVEQVTIVINFDMPIDMNGQADCETYLH 62 (118)
Q Consensus 4 l~~~~r~~~~~~F~~---g~~~iL-v~T~~~~~-----------------Gidi~~v~~VI~~~~p~~~~~~~~~~~y~q 62 (118)
|++.+|+.+++...+ ..+++| +||.-... --|+--+.+|-.+|+|+ .....-++
T Consensus 520 Lt~~~re~il~~~~~~g~~gLRvLalA~~~~~~~~~~~~~l~~~s~~~~~E~~LtFvGlVGi~DPPR-----~ev~~ai~ 594 (972)
T KOG0202|consen 520 LTQASRETILANVYEMGSEGLRVLALASKDSPGQVPDDQDLNDTSNRATAESDLTFVGLVGILDPPR-----PEVADAIE 594 (972)
T ss_pred CcHHHHHHHHHHHHHHhhccceEEEEEccCCcccChhhhhhcccccccccccceEEEEEeeccCCCc-----hhHHHHHH
Confidence 678888888877764 456666 66653221 01333355667789887 12333344
Q ss_pred hhcccccCCCceEEEEEecCCcHHHHHHHHHHhCC
Q psy6850 63 RIGRTGRFGKCGIAINLVDEHSVGVLKDIEKHFGK 97 (118)
Q Consensus 63 r~GR~gR~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 97 (118)
.+- +.|+-+.+++.+...-...|.+..|.
T Consensus 595 ~c~------~aGIrV~mITGD~~~TA~AI~r~iGi 623 (972)
T KOG0202|consen 595 LCR------QAGIRVIMITGDNKETAEAIAREIGI 623 (972)
T ss_pred HHH------HcCCEEEEEcCCCHHHHHHHHHHhCC
Confidence 442 24777888899988888899888874
No 222
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=22.01 E-value=1.6e+02 Score=21.20 Aligned_cols=29 Identities=24% Similarity=0.124 Sum_probs=19.7
Q ss_pred EEEEEecCCcHHHHHHHHHHhCCCceecC
Q psy6850 75 IAINLVDEHSVGVLKDIEKHFGKKIELLD 103 (118)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (118)
.++.++...--.++..+++..+.++-.+-
T Consensus 77 d~i~l~~NT~H~~~d~iq~~~~iPllhIi 105 (230)
T COG1794 77 DFIVLPTNTMHKVADDIQKAVGIPLLHII 105 (230)
T ss_pred CEEEEeCCcHHHHHHHHHHhcCCCeehHH
Confidence 35666666666677888888777765543
No 223
>PRK09570 rpoH DNA-directed RNA polymerase subunit H; Reviewed
Probab=21.81 E-value=1.2e+02 Score=18.15 Aligned_cols=37 Identities=5% Similarity=0.061 Sum_probs=28.9
Q ss_pred CCCCCHHHHHHHHHHHhcC--CCcEEEEcCccccccCcC
Q psy6850 1 MGKGPNTSSSSSLNSFTSC--KEKVLITTNVLARGIDVE 37 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g--~~~iLv~T~~~~~Gidi~ 37 (118)
|-=|+++|..+.+++++-. ++.-+..||.+++.+...
T Consensus 15 H~iLs~eE~~~lL~~y~i~~~qLP~I~~~DPv~r~~g~k 53 (79)
T PRK09570 15 HEILSEEEAKKLLKEYGIKPEQLPKIKASDPVVKAIGAK 53 (79)
T ss_pred eEECCHHHHHHHHHHcCCCHHHCCceeccChhhhhcCCC
Confidence 4458999999999999865 556688888888876654
No 224
>PLN02599 dihydroorotase
Probab=21.80 E-value=1.3e+02 Score=22.97 Aligned_cols=29 Identities=14% Similarity=0.145 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEcCccccc
Q psy6850 5 PNTSSSSSLNSFTSCKEKVLITTNVLARG 33 (118)
Q Consensus 5 ~~~~r~~~~~~F~~g~~~iLv~T~~~~~G 33 (118)
++++|+..++..++|.+..+|+||-+...
T Consensus 244 ~~~dr~aL~~al~~G~i~~~i~SDHaPh~ 272 (364)
T PLN02599 244 REIHREALVKAATSGSKKFFLGTDSAPHP 272 (364)
T ss_pred CHHHHHHHHHHHHcCCCCEEEecCCCCCC
Confidence 57889999999999999889999966543
No 225
>PF11637 UvsW: ATP-dependant DNA helicase UvsW; InterPro: IPR020975 This entry represents the DNA helicase UvsW from Enterobacteria phage T4. The protein is a member of the monomeric SF2 helicase superfamily and shows structural homology to the eukaryotic SF2 helicase Rad54. UvsW is thought to have a role in recombination and the rescue of stalled replication forks []. ; PDB: 2JPN_A.
Probab=21.38 E-value=36 Score=18.70 Aligned_cols=29 Identities=24% Similarity=0.329 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhCCCceecCCCChhhhhhc
Q psy6850 85 VGVLKDIEKHFGKKIELLDTEDIDDEGNF 113 (118)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (118)
..-+.+|+++++.+..++...+.+++..=
T Consensus 7 ~~Gl~ELEkyY~kR~KEv~l~~sdDIsiR 35 (54)
T PF11637_consen 7 LDGLEELEKYYKKRKKEVELKDSDDISIR 35 (54)
T ss_dssp HHHHHHHHHHHHHHTTTS--TTHHHHHHH
T ss_pred cccHHHHHHHHHHhhhhcccCCcccccHH
Confidence 34568899999999999988888887653
No 226
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=21.26 E-value=2.1e+02 Score=18.17 Aligned_cols=27 Identities=19% Similarity=0.443 Sum_probs=16.1
Q ss_pred cCCCcEEEEcC------ccccccCcCCccEEEE
Q psy6850 18 SCKEKVLITTN------VLARGIDVEQVTIVIN 44 (118)
Q Consensus 18 ~g~~~iLv~T~------~~~~Gidi~~v~~VI~ 44 (118)
.++.+|+|+|. +....+++..+++||.
T Consensus 93 ~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iVi 125 (169)
T PF00270_consen 93 SNQADILVTTPEQLLDLISNGKINISRLSLIVI 125 (169)
T ss_dssp HTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEE
T ss_pred cccccccccCcchhhccccccccccccceeecc
Confidence 66788888887 1112235556666654
No 227
>TIGR02744 TrbI_Ftype type-F conjugative transfer system protein TrbI. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=21.12 E-value=1.4e+02 Score=19.01 Aligned_cols=35 Identities=17% Similarity=0.366 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHHHHhc------------CCCcEEEEcCccccccCcC
Q psy6850 3 KGPNTSSSSSLNSFTS------------CKEKVLITTNVLARGIDVE 37 (118)
Q Consensus 3 ~l~~~~r~~~~~~F~~------------g~~~iLv~T~~~~~Gidi~ 37 (118)
+|+.+++++....|.. +..=|||...+.+-+.|+.
T Consensus 54 ~lte~q~~~~~~rF~~~L~~~L~~yq~~H~~vILvspAVv~Ga~DIT 100 (112)
T TIGR02744 54 KLSEAQQKALLGRFNALLEAELQAWQAQHHAIILVSPAVVSGAVDIT 100 (112)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCEEEEechhhhcCCCCCC
Confidence 5788888888888874 3334566666666557764
No 228
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=21.06 E-value=1.5e+02 Score=24.27 Aligned_cols=28 Identities=7% Similarity=0.035 Sum_probs=24.1
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcC
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTN 28 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~ 28 (118)
++.++.+++..+++..+.|+.+++++|+
T Consensus 96 ~s~~~~~~~~~~~~~~~~g~~~il~~tP 123 (607)
T PRK11057 96 NSTQTREQQLEVMAGCRTGQIKLLYIAP 123 (607)
T ss_pred cCCCCHHHHHHHHHHHhCCCCcEEEECh
Confidence 4667888888899999999999999986
No 229
>KOG1133|consensus
Probab=20.64 E-value=2.8e+02 Score=23.73 Aligned_cols=71 Identities=23% Similarity=0.313 Sum_probs=42.6
Q ss_pred HHHHHHHhc----CCCcEE--EEcCccccccCcCC--ccEEEEecCCCCCCC--------------CCC-----------
Q psy6850 10 SSSLNSFTS----CKEKVL--ITTNVLARGIDVEQ--VTIVINFDMPIDMNG--------------QAD----------- 56 (118)
Q Consensus 10 ~~~~~~F~~----g~~~iL--v~T~~~~~Gidi~~--v~~VI~~~~p~~~~~--------------~~~----------- 56 (118)
..+++.|+. |.=.|| |.-.-+++|||+.+ ++.|+..++|. .+. +..
T Consensus 673 ~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~D~LgRaVvvVGlPy-PN~~s~EL~er~k~l~~k~~~~gagke~yEn 751 (821)
T KOG1133|consen 673 EDVLEGYAEAAERGRGAILLAVVGGKLSEGINFSDDLGRAVVVVGLPY-PNIQSVELQERMKHLDGKLPTPGAGKELYEN 751 (821)
T ss_pred HHHHHHHHHHhhcCCCeEEEEEeccccccccccccccccEEEEeecCC-CCCCCHHHHHHHHHhhhccCCCCchHHHHHH
Confidence 345666654 232344 55567889999973 56788888773 211 000
Q ss_pred --cchhhhhhcccccCCCceEEEEEec
Q psy6850 57 --CETYLHRIGRTGRFGKCGIAINLVD 81 (118)
Q Consensus 57 --~~~y~qr~GR~gR~~~~g~~~~~~~ 81 (118)
.....|.+|||-|..+.-.++.++.
T Consensus 752 lCMkAVNQsIGRAIRH~~DYA~i~LlD 778 (821)
T KOG1133|consen 752 LCMKAVNQSIGRAIRHRKDYASIYLLD 778 (821)
T ss_pred HHHHHHHHHHHHHHhhhccceeEEEeh
Confidence 1223588899998766555555554
Done!