Query psy6850
Match_columns 118
No_of_seqs 148 out of 1332
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 20:00:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6850.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6850hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rb4_A ATP-dependent RNA helic 100.0 6.2E-29 2.1E-33 167.9 11.7 110 1-110 65-174 (175)
2 3eaq_A Heat resistant RNA depe 100.0 2.4E-28 8.2E-33 170.0 12.2 104 1-110 62-165 (212)
3 2hjv_A ATP-dependent RNA helic 100.0 7.3E-28 2.5E-32 161.1 11.6 97 1-103 66-162 (163)
4 1fuk_A Eukaryotic initiation f 100.0 1.6E-27 5.4E-32 159.6 12.0 101 1-107 61-161 (165)
5 3i32_A Heat resistant RNA depe 99.9 2.7E-27 9.3E-32 172.6 11.8 105 1-111 59-163 (300)
6 1t5i_A C_terminal domain of A 99.9 2.4E-27 8.2E-32 160.1 9.3 99 1-105 62-161 (172)
7 2p6n_A ATP-dependent RNA helic 99.9 1.9E-26 6.4E-31 158.3 8.6 97 1-103 85-182 (191)
8 2jgn_A DBX, DDX3, ATP-dependen 99.9 1.1E-26 3.7E-31 158.7 6.8 97 1-103 77-173 (185)
9 3fht_A ATP-dependent RNA helic 99.9 1.1E-25 3.7E-30 166.9 11.1 115 1-115 297-412 (412)
10 2j0s_A ATP-dependent RNA helic 99.9 2.5E-25 8.5E-30 165.6 10.6 101 1-107 307-407 (410)
11 2yjt_D ATP-dependent RNA helic 99.9 2.9E-27 9.8E-32 159.2 0.0 99 1-105 61-159 (170)
12 2db3_A ATP-dependent RNA helic 99.9 2E-25 6.9E-30 168.8 9.3 97 1-103 331-428 (434)
13 1s2m_A Putative ATP-dependent 99.9 1.1E-24 3.9E-29 161.4 12.2 104 1-110 289-392 (400)
14 3fmp_B ATP-dependent RNA helic 99.9 1.5E-26 5.3E-31 176.0 0.0 114 1-114 364-478 (479)
15 3i5x_A ATP-dependent RNA helic 99.9 2E-24 6.8E-29 167.0 11.6 97 1-103 373-469 (563)
16 3eiq_A Eukaryotic initiation f 99.9 6.6E-25 2.2E-29 163.0 7.8 101 1-107 311-411 (414)
17 3sqw_A ATP-dependent RNA helic 99.9 3E-24 1E-28 167.2 10.5 97 1-103 322-418 (579)
18 3pey_A ATP-dependent RNA helic 99.9 5.4E-24 1.9E-28 156.6 11.0 113 1-113 274-388 (395)
19 1hv8_A Putative ATP-dependent 99.9 1.1E-23 3.8E-28 153.6 11.1 97 1-103 269-365 (367)
20 1xti_A Probable ATP-dependent 99.9 1.7E-23 6E-28 154.3 11.1 99 1-105 281-380 (391)
21 2i4i_A ATP-dependent RNA helic 99.9 4E-24 1.4E-28 159.1 7.3 96 1-102 307-402 (417)
22 2z0m_A 337AA long hypothetical 99.9 3.9E-23 1.3E-27 149.4 8.2 90 1-97 247-336 (337)
23 1fuu_A Yeast initiation factor 99.9 2.8E-24 9.4E-29 158.5 0.0 100 1-106 290-389 (394)
24 2v1x_A ATP-dependent DNA helic 99.9 1.4E-22 4.7E-27 159.0 8.8 85 1-91 298-382 (591)
25 1oyw_A RECQ helicase, ATP-depe 99.9 1.9E-22 6.5E-27 156.1 9.5 87 1-93 267-353 (523)
26 3fho_A ATP-dependent RNA helic 99.9 2.1E-23 7.1E-28 160.6 3.5 113 1-113 388-501 (508)
27 3tbk_A RIG-I helicase domain; 99.9 8.2E-23 2.8E-27 156.2 3.5 83 1-91 432-515 (555)
28 2ykg_A Probable ATP-dependent 99.8 1.8E-22 6.1E-27 159.3 2.6 100 1-108 441-545 (696)
29 4a2p_A RIG-I, retinoic acid in 99.8 1.1E-21 3.7E-26 150.4 5.2 77 1-85 433-510 (556)
30 3oiy_A Reverse gyrase helicase 99.8 1.1E-20 3.9E-25 141.2 7.0 84 13-104 290-386 (414)
31 2d7d_A Uvrabc system protein B 99.8 1.1E-19 3.7E-24 144.1 9.7 81 1-88 476-561 (661)
32 4a2q_A RIG-I, retinoic acid in 99.8 2.9E-20 9.8E-25 149.5 5.9 77 1-85 674-751 (797)
33 4gl2_A Interferon-induced heli 99.8 4E-20 1.4E-24 145.9 5.8 62 4-71 448-509 (699)
34 1c4o_A DNA nucleotide excision 99.8 2.2E-19 7.7E-24 142.4 9.6 81 1-88 470-555 (664)
35 1wp9_A ATP-dependent RNA helic 99.8 9E-20 3.1E-24 136.1 6.0 77 3-86 402-478 (494)
36 2zj8_A DNA helicase, putative 99.8 5.5E-19 1.9E-23 140.6 9.9 95 1-103 301-405 (720)
37 2va8_A SSO2462, SKI2-type heli 99.8 6E-19 2.1E-23 140.1 9.6 78 1-84 319-409 (715)
38 1gm5_A RECG; helicase, replica 99.8 1.2E-19 4E-24 146.1 5.3 82 1-87 620-701 (780)
39 4a2w_A RIG-I, retinoic acid in 99.8 1.5E-19 5E-24 147.8 5.9 77 1-85 674-751 (936)
40 3rc3_A ATP-dependent RNA helic 99.8 7.5E-19 2.6E-23 139.7 9.7 101 1-103 351-464 (677)
41 2xgj_A ATP-dependent RNA helic 99.8 8E-19 2.7E-23 144.4 9.3 85 1-91 413-508 (1010)
42 3dmq_A RNA polymerase-associat 99.8 4.2E-19 1.4E-23 145.5 7.6 100 1-106 535-638 (968)
43 2p6r_A Afuhel308 helicase; pro 99.8 7.7E-19 2.6E-23 139.4 8.7 78 1-84 303-389 (702)
44 1yks_A Genome polyprotein [con 99.8 1E-19 3.5E-24 138.2 2.8 82 7-95 210-314 (440)
45 3l9o_A ATP-dependent RNA helic 99.8 1.2E-18 4E-23 144.5 8.1 91 1-91 511-606 (1108)
46 1tf5_A Preprotein translocase 99.7 2.4E-19 8.1E-24 144.3 2.4 77 1-85 463-547 (844)
47 2whx_A Serine protease/ntpase/ 99.7 1.1E-18 3.8E-23 137.5 5.5 82 7-95 388-493 (618)
48 1z5z_A Helicase of the SNF2/RA 99.7 3.3E-18 1.1E-22 123.0 6.9 77 1-83 144-224 (271)
49 1gku_B Reverse gyrase, TOP-RG; 99.7 4.6E-18 1.6E-22 140.4 8.4 92 1-97 305-468 (1054)
50 2xau_A PRE-mRNA-splicing facto 99.7 2.8E-19 9.4E-24 143.9 0.7 78 1-85 345-445 (773)
51 2fwr_A DNA repair protein RAD2 99.7 2.4E-18 8.2E-23 130.6 5.6 77 1-83 375-454 (472)
52 2oca_A DAR protein, ATP-depend 99.7 2.3E-18 8E-23 131.7 4.5 73 1-79 378-451 (510)
53 2wv9_A Flavivirin protease NS2 99.7 3.7E-18 1.3E-22 135.6 5.4 82 7-95 443-548 (673)
54 2eyq_A TRCF, transcription-rep 99.7 1.4E-17 4.6E-22 138.6 8.5 77 1-83 845-922 (1151)
55 2z83_A Helicase/nucleoside tri 99.7 7.1E-19 2.4E-23 134.1 -0.0 70 7-83 223-313 (459)
56 2jlq_A Serine protease subunit 99.7 9.9E-18 3.4E-22 127.5 5.5 68 7-81 221-309 (451)
57 3jux_A Protein translocase sub 99.7 1.9E-17 6.6E-22 131.9 6.2 77 1-85 505-589 (822)
58 4a4z_A Antiviral helicase SKI2 99.7 4.3E-17 1.5E-21 134.1 8.2 85 1-91 406-502 (997)
59 3o8b_A HCV NS3 protease/helica 99.7 2.8E-18 9.5E-23 136.0 0.5 91 1-107 427-542 (666)
60 4f92_B U5 small nuclear ribonu 99.7 7E-17 2.4E-21 138.2 7.6 91 1-91 1220-1316(1724)
61 2fsf_A Preprotein translocase 99.7 2.4E-17 8.3E-22 132.7 4.3 77 1-85 472-585 (853)
62 4ddu_A Reverse gyrase; topoiso 99.7 5.9E-17 2E-21 134.3 5.9 85 9-96 344-503 (1104)
63 4f92_B U5 small nuclear ribonu 99.7 8.3E-17 2.9E-21 137.8 6.2 92 1-92 385-482 (1724)
64 2v6i_A RNA helicase; membrane, 99.6 1.8E-16 6E-21 120.1 5.7 70 1-81 202-289 (431)
65 1z63_A Helicase of the SNF2/RA 99.6 5.6E-16 1.9E-20 118.2 8.5 78 1-84 373-454 (500)
66 1nkt_A Preprotein translocase 99.6 2E-16 7E-21 127.8 4.9 78 1-86 491-620 (922)
67 3h1t_A Type I site-specific re 99.6 1.9E-15 6.6E-20 117.7 7.0 65 1-72 478-545 (590)
68 1z3i_X Similar to RAD54-like; 99.6 1.1E-14 3.8E-19 115.0 10.8 88 1-94 447-541 (644)
69 3mwy_W Chromo domain-containin 99.5 4E-14 1.4E-18 114.1 9.0 90 1-96 603-699 (800)
70 2w00_A HSDR, R.ECOR124I; ATP-b 99.3 1.5E-11 5.3E-16 101.6 8.9 81 8-96 637-721 (1038)
71 2vl7_A XPD; helicase, unknown 97.9 1E-05 3.5E-10 62.7 5.2 71 7-79 416-518 (540)
72 2ipc_A Preprotein translocase 96.6 0.0031 1.1E-07 52.0 5.5 39 41-85 662-700 (997)
73 4a15_A XPD helicase, ATP-depen 96.4 0.0085 2.9E-07 47.2 7.2 74 4-79 479-581 (620)
74 1gm5_A RECG; helicase, replica 89.5 0.5 1.7E-05 38.3 5.0 45 1-45 452-497 (780)
75 3crv_A XPD/RAD3 related DNA he 88.1 0.58 2E-05 36.0 4.4 41 9-49 426-473 (551)
76 3hgt_A HDA1 complex subunit 3; 82.1 4.4 0.00015 29.6 6.4 61 19-85 169-239 (328)
77 2eyq_A TRCF, transcription-rep 74.3 3.2 0.00011 35.0 4.2 44 1-44 687-731 (1151)
78 3oiy_A Reverse gyrase helicase 70.9 3.6 0.00012 29.9 3.4 44 1-44 98-145 (414)
79 1qle_D Cytochrome AA3, ccytoch 69.4 2.7 9.3E-05 21.4 1.7 18 1-18 5-22 (43)
80 2yew_B E1 envelope glycoprotei 55.3 7.1 0.00024 29.0 2.4 12 41-52 178-189 (427)
81 3n40_F E1 envelope glycoprotei 53.2 7.5 0.00026 28.5 2.2 12 41-52 185-196 (393)
82 4ddu_A Reverse gyrase; topoiso 52.0 8.3 0.00028 32.5 2.6 44 1-44 155-202 (1104)
83 3j0c_A E1 envelope glycoprotei 51.4 6.8 0.00023 29.2 1.8 12 41-52 183-194 (442)
84 3j0f_E E1 envelope glycoprotei 49.3 6.7 0.00023 29.2 1.5 11 42-52 184-194 (439)
85 3pnu_A Dihydroorotase; TIM bar 47.9 16 0.00055 26.6 3.4 30 5-34 238-267 (359)
86 1i9w_A Fusion protein E1; enve 47.7 7.5 0.00026 28.5 1.5 11 42-52 184-194 (390)
87 1jr5_A 10 kDa anti-sigma facto 45.7 5.5 0.00019 23.5 0.4 20 2-21 59-78 (90)
88 3n44_F E1 envelope glycoprotei 44.9 12 0.00041 28.1 2.2 12 41-52 205-216 (473)
89 3muu_A Structural polyprotein; 43.3 13 0.00043 29.8 2.2 12 41-52 543-554 (750)
90 1oyw_A RECQ helicase, ATP-depe 42.3 22 0.00074 27.1 3.4 28 1-28 96-123 (523)
91 2z26_A Dihydroorotase, dhoase; 40.4 25 0.00085 25.1 3.4 26 6-31 228-253 (347)
92 3qtg_A Pyruvate kinase, PK; TI 37.1 17 0.00058 27.8 2.0 74 31-114 164-241 (461)
93 3fe2_A Probable ATP-dependent 34.0 58 0.002 21.5 4.2 40 1-44 137-182 (242)
94 1t6n_A Probable ATP-dependent 31.9 78 0.0027 20.3 4.6 41 1-44 118-164 (220)
95 2v1x_A ATP-dependent DNA helic 30.1 46 0.0016 25.8 3.5 28 1-28 115-144 (591)
96 3hqn_D Pyruvate kinase, PK; TI 23.8 16 0.00056 28.1 -0.0 74 31-114 175-250 (499)
97 2l2l_A Transcriptional repress 23.3 58 0.002 16.2 1.9 14 5-18 2-15 (43)
98 3gr4_A Pyruvate kinase isozyme 23.2 19 0.00066 28.1 0.3 74 31-114 225-300 (550)
99 1a3w_A Pyruvate kinase; allost 22.9 20 0.00068 27.6 0.3 72 32-113 177-250 (500)
100 1e0t_A Pyruvate kinase, PK; ph 22.4 16 0.00054 28.0 -0.4 73 32-114 156-231 (470)
101 1cmk_I CAMP-dependent protein 22.4 22 0.00076 15.9 0.3 8 63-70 8-15 (26)
102 1hmj_A RPB5, protein (subunit 21.0 72 0.0025 18.1 2.4 36 1-36 12-49 (78)
103 3khd_A Pyruvate kinase; malari 20.7 18 0.00063 28.0 -0.3 74 31-114 199-275 (520)
No 1
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=6.2e-29 Score=167.89 Aligned_cols=110 Identities=51% Similarity=0.806 Sum_probs=96.3
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|++.+|.+++++|++|+++|||||+++++|+|+|++++||+||+|++...+.+...|+||+||+||.|+.|.+++|+
T Consensus 65 ~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~ 144 (175)
T 2rb4_A 65 SGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMI 144 (175)
T ss_dssp CSSCCHHHHHHHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEE
T ss_pred eCCCCHHHHHHHHHHHHcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEE
Confidence 89999999999999999999999999999999999999999999999954444449999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhCCCceecCCCChhhh
Q psy6850 81 DEHSVGVLKDIEKHFGKKIELLDTEDIDDE 110 (118)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (118)
.+.+...+..+++.++..+++++.+..+.+
T Consensus 145 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 174 (175)
T 2rb4_A 145 EVDELPSLMKIQDHFNSSIKQLNAEDMDEI 174 (175)
T ss_dssp CGGGHHHHHHHHHHHTCCCEEECSSCCC--
T ss_pred ccchHHHHHHHHHHhcCcccccCCchhccc
Confidence 999999999999999999999998776654
No 2
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.96 E-value=2.4e-28 Score=169.95 Aligned_cols=104 Identities=28% Similarity=0.519 Sum_probs=98.6
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|++++|.+++++|++|+.+|||||+++++|+|+|++++||+||+|+ ++..|+||+||+||.|+.|.|++|+
T Consensus 62 hg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~~~~p~------~~~~~~qr~GR~gR~g~~g~~~~l~ 135 (212)
T 3eaq_A 62 HGDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPD------RAEAYQHRSGRTGRAGRGGRVVLLY 135 (212)
T ss_dssp CSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCSSSCCCBSEEEESSCCS------SHHHHHHHHTTBCCCC--BEEEEEE
T ss_pred ECCCCHHHHHHHHHHHHCCCCeEEEecChhhcCCCCccCcEEEECCCCc------CHHHHHHHhcccCCCCCCCeEEEEE
Confidence 8999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhCCCceecCCCChhhh
Q psy6850 81 DEHSVGVLKDIEKHFGKKIELLDTEDIDDE 110 (118)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (118)
++.+...++.+++..+..+..++.+..+++
T Consensus 136 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~ei 165 (212)
T 3eaq_A 136 GPRERRDVEALERAVGRRFKRVNPPTPEEV 165 (212)
T ss_dssp CGGGHHHHHHHHHHHSSCCEECCCCCHHHH
T ss_pred chhHHHHHHHHHHHhcCcCeecCCCCHHHH
Confidence 999999999999999999999998877655
No 3
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.95 E-value=7.3e-28 Score=161.08 Aligned_cols=97 Identities=38% Similarity=0.653 Sum_probs=93.9
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|++.+|.+++++|++|+++|||||+++++|+|+|++++||+||+|+ ++..|+||+||+||.|+.|.+++|+
T Consensus 66 hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~------~~~~~~qr~GR~~R~g~~g~~~~~~ 139 (163)
T 2hjv_A 66 HGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPL------EKESYVHRTGRTGRAGNKGKAISFV 139 (163)
T ss_dssp CTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEESSCCS------SHHHHHHHTTTSSCTTCCEEEEEEE
T ss_pred eCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCchhcCCEEEEeCCCC------CHHHHHHhccccCcCCCCceEEEEe
Confidence 8999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhCCCceecC
Q psy6850 81 DEHSVGVLKDIEKHFGKKIELLD 103 (118)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~ 103 (118)
.+.+...++.+++.++.++++++
T Consensus 140 ~~~~~~~~~~i~~~~~~~~~~~~ 162 (163)
T 2hjv_A 140 TAFEKRFLADIEEYIGFEIQKIE 162 (163)
T ss_dssp CGGGHHHHHHHHHHHTSCCEECC
T ss_pred cHHHHHHHHHHHHHHCCCcCccC
Confidence 99999999999999999887754
No 4
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.95 E-value=1.6e-27 Score=159.64 Aligned_cols=101 Identities=43% Similarity=0.804 Sum_probs=92.3
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|++.+|.+++++|++|+.+|||||+++++|+|+|++++||+||+|+ ++..|+||+||+||.|+.|.+++|+
T Consensus 61 ~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~------~~~~~~qr~GR~gR~g~~g~~~~~~ 134 (165)
T 1fuk_A 61 YSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPA------NKENYIHRIGRGGRFGRKGVAINFV 134 (165)
T ss_dssp CTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEESSCCS------SGGGGGGSSCSCC-----CEEEEEE
T ss_pred ECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCCCcccCCEEEEeCCCC------CHHHHHHHhcccccCCCCceEEEEE
Confidence 8999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhCCCceecCCCCh
Q psy6850 81 DEHSVGVLKDIEKHFGKKIELLDTEDI 107 (118)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (118)
.+.+...+..+++.++..+++++.+..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (165)
T 1fuk_A 135 TNEDVGAMRELEKFYSTQIEELPSDIA 161 (165)
T ss_dssp ETTTHHHHHHHHHHSSCCCEECCSCCT
T ss_pred cchHHHHHHHHHHHHccCccccCccHH
Confidence 999999999999999999999886643
No 5
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.95 E-value=2.7e-27 Score=172.65 Aligned_cols=105 Identities=28% Similarity=0.504 Sum_probs=96.1
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|++.+|.++++.|+.|+.+|||||+++++|+|+|++++||+||+|+ +...|+||+||+||.|+.|.|++|+
T Consensus 59 hg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~~d~p~------s~~~y~Qr~GRagR~g~~G~~i~l~ 132 (300)
T 3i32_A 59 HGDMSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPD------RAEAYQHRSGRTGRAGRGGRVVLLY 132 (300)
T ss_dssp CSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCSTTCCCCSEEEESSCCS------STTHHHHHHTCCC-----CEEEEEE
T ss_pred eCCCCHHHHHHHHHHhhcCCceEEEEechhhcCccccceeEEEEcCCCC------CHHHHHHHccCcCcCCCCceEEEEe
Confidence 8999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhCCCceecCCCChhhhh
Q psy6850 81 DEHSVGVLKDIEKHFGKKIELLDTEDIDDEG 111 (118)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (118)
++.+...++.+++..+..+..++.+..+++.
T Consensus 133 ~~~e~~~~~~ie~~~~~~~~~~~~~~~~ei~ 163 (300)
T 3i32_A 133 GPRERRDVEALERAVGRRFKRVNPPTPEEVL 163 (300)
T ss_dssp CSSTHHHHHHHHHHHTCCCEECCCCCHHHHH
T ss_pred ChHHHHHHHHHHHHhCCcceEeCCCCHHHHH
Confidence 9999999999999999999999988766553
No 6
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.94 E-value=2.4e-27 Score=160.10 Aligned_cols=99 Identities=37% Similarity=0.720 Sum_probs=93.1
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|++.+|.+++++|++|+.+|||||+++++|+|+|++++||+||+|+ ++..|+||+||+||.|+.|.+++|+
T Consensus 62 hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~------~~~~~~qr~GR~~R~g~~g~~~~~~ 135 (172)
T 1t5i_A 62 HRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPE------DSDTYLHRVARAGRFGTKGLAITFV 135 (172)
T ss_dssp CTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEESSCCS------SHHHHHHHHHHHTGGGCCCEEEEEE
T ss_pred ECCCCHHHHHHHHHHHHCCCCcEEEECCchhcCcchhhCCEEEEECCCC------CHHHHHHHhcccccCCCCcEEEEEE
Confidence 8999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCC-cHHHHHHHHHHhCCCceecCCC
Q psy6850 81 DEH-SVGVLKDIEKHFGKKIELLDTE 105 (118)
Q Consensus 81 ~~~-~~~~~~~~~~~~~~~~~~~~~~ 105 (118)
.+. +...++.+++.++.++++++..
T Consensus 136 ~~~~~~~~~~~l~~~~~~~~~~~~~~ 161 (172)
T 1t5i_A 136 SDENDAKILNDVQDRFEVNISELPDE 161 (172)
T ss_dssp CSHHHHHHHHHHHHHHCCCEEECC--
T ss_pred cChhHHHHHHHHHHHHhcchhhCChh
Confidence 865 5678899999999999998754
No 7
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.93 E-value=1.9e-26 Score=158.33 Aligned_cols=97 Identities=32% Similarity=0.578 Sum_probs=86.0
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|++++|.+++++|++|+++|||||+++++|+|+|++++||+||+|+ ++..|+||+||+||.|+.|.+++|+
T Consensus 85 hg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~------~~~~~~qr~GR~gR~g~~g~~i~l~ 158 (191)
T 2p6n_A 85 HGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPE------EIENYVHRIGRTGCSGNTGIATTFI 158 (191)
T ss_dssp CTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCS------SHHHHHHHHTTSCC---CCEEEEEE
T ss_pred eCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCC------CHHHHHHHhCccccCCCCcEEEEEE
Confidence 8999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCC-cHHHHHHHHHHhCCCceecC
Q psy6850 81 DEH-SVGVLKDIEKHFGKKIELLD 103 (118)
Q Consensus 81 ~~~-~~~~~~~~~~~~~~~~~~~~ 103 (118)
.+. +...++.+++.+....+.++
T Consensus 159 ~~~~~~~~~~~l~~~l~~~~~~~p 182 (191)
T 2p6n_A 159 NKACDESVLMDLKALLLEAKQKVP 182 (191)
T ss_dssp CTTSCHHHHHHHHHHHHHTTCCCC
T ss_pred cCchhHHHHHHHHHHHHHccCcCC
Confidence 976 77778888887755555443
No 8
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.93 E-value=1.1e-26 Score=158.67 Aligned_cols=97 Identities=37% Similarity=0.650 Sum_probs=77.8
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|++.+|.+++++|++|+++|||||+++++|+|+|++++||+||+|+ ++..|+||+||+||.|+.|.+++|+
T Consensus 77 hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~------s~~~~~Qr~GR~~R~g~~g~~~~~~ 150 (185)
T 2jgn_A 77 HGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPS------DIEEYVHRIGRTGRVGNLGLATSFF 150 (185)
T ss_dssp C--------CHHHHHHHHTSSSEEEEEC------CCCSBSEEEESSCCS------SHHHHHHHHTTBCCTTSCEEEEEEE
T ss_pred eCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEEeCCCC------CHHHHHHHccccCCCCCCcEEEEEE
Confidence 8999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhCCCceecC
Q psy6850 81 DEHSVGVLKDIEKHFGKKIELLD 103 (118)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~ 103 (118)
.+.+...++.+++.++...++++
T Consensus 151 ~~~~~~~~~~l~~~l~~~~~~~~ 173 (185)
T 2jgn_A 151 NERNINITKDLLDLLVEAKQEVP 173 (185)
T ss_dssp CGGGGGGHHHHHHHHHHTTCCCC
T ss_pred chhhHHHHHHHHHHHHhccCCCC
Confidence 99999999999998866666554
No 9
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.93 E-value=1.1e-25 Score=166.92 Aligned_cols=115 Identities=55% Similarity=0.887 Sum_probs=94.5
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|++++|.+++++|++|+.+|||||+++++|+|+|++++||+||+|+....+.+...|+||+||+||.|+.|.+++++
T Consensus 297 ~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~ 376 (412)
T 3fht_A 297 SGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMV 376 (412)
T ss_dssp CTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEE
T ss_pred cCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEE
Confidence 89999999999999999999999999999999999999999999999974444447789999999999999999999999
Q ss_pred cCCc-HHHHHHHHHHhCCCceecCCCChhhhhhccc
Q psy6850 81 DEHS-VGVLKDIEKHFGKKIELLDTEDIDDEGNFRN 115 (118)
Q Consensus 81 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (118)
.+.+ ...++.+++.++..+.+++.+..++++.+++
T Consensus 377 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 412 (412)
T 3fht_A 377 DSKHSMNILNRIQEHFNKKIERLDTDDLDEIEKIAN 412 (412)
T ss_dssp CSHHHHHHHHHHHHHHTCCCEEC-------------
T ss_pred cChhhHHHHHHHHHHHCCccccCCCccHHHHHHhcC
Confidence 8664 7888999999999999999988888877653
No 10
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.92 E-value=2.5e-25 Score=165.62 Aligned_cols=101 Identities=41% Similarity=0.765 Sum_probs=97.8
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|++++|.+++++|++|+.+|||||+++++|+|+|++++||+||+|+ +...|+||+||+||.|+.|.+++|+
T Consensus 307 h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~------s~~~~~Qr~GR~gR~g~~g~~~~~~ 380 (410)
T 2j0s_A 307 HGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPN------NRELYIHRIGRSGRYGRKGVAINFV 380 (410)
T ss_dssp CTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCS------SHHHHHHHHTTSSGGGCCEEEEEEE
T ss_pred eCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCC------CHHHHHHhcccccCCCCceEEEEEe
Confidence 8999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhCCCceecCCCCh
Q psy6850 81 DEHSVGVLKDIEKHFGKKIELLDTEDI 107 (118)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (118)
.+.+...++.++++++..+++++.+..
T Consensus 381 ~~~~~~~~~~i~~~~~~~~~~~~~~~~ 407 (410)
T 2j0s_A 381 KNDDIRILRDIEQYYSTQIDEMPMNVA 407 (410)
T ss_dssp EGGGHHHHHHHHHHTTCCCEECCSCCT
T ss_pred cHHHHHHHHHHHHHhCCCceecccchh
Confidence 999999999999999999999987653
No 11
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.87 E-value=2.9e-27 Score=159.16 Aligned_cols=99 Identities=37% Similarity=0.582 Sum_probs=94.3
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|++.+|.+++++|++|+.+|||||+++++|+|+|++++||+||+|+ ++..|+||+||+||.|+.|.+++++
T Consensus 61 ~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~------~~~~~~qr~GR~~R~g~~g~~~~~~ 134 (170)
T 2yjt_D 61 EGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPR------SGDTYLHRIGRTARAGRKGTAISLV 134 (170)
Confidence 8999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhCCCceecCCC
Q psy6850 81 DEHSVGVLKDIEKHFGKKIELLDTE 105 (118)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (118)
.+.+...+..+++.++..+++...+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (170)
T 2yjt_D 135 EAHDHLLLGKVGRYIEEPIKARVID 159 (170)
Confidence 9999999999999988888776654
No 12
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.92 E-value=2e-25 Score=168.84 Aligned_cols=97 Identities=35% Similarity=0.593 Sum_probs=89.2
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||++++.+|.+++++|++|+.+|||||+++++|+|+|+|++||+||+|. +...|+||+||+||.|+.|.+++|+
T Consensus 331 hg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~------~~~~y~qriGR~gR~g~~G~a~~~~ 404 (434)
T 2db3_A 331 HGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPS------KIDDYVHRIGRTGRVGNNGRATSFF 404 (434)
T ss_dssp STTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCS------SHHHHHHHHTTSSCTTCCEEEEEEE
T ss_pred eCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCC------CHHHHHHHhcccccCCCCCEEEEEE
Confidence 9999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred c-CCcHHHHHHHHHHhCCCceecC
Q psy6850 81 D-EHSVGVLKDIEKHFGKKIELLD 103 (118)
Q Consensus 81 ~-~~~~~~~~~~~~~~~~~~~~~~ 103 (118)
. .++....+.+.+.+....+++|
T Consensus 405 ~~~~~~~~~~~l~~~l~~~~~~vp 428 (434)
T 2db3_A 405 DPEKDRAIAADLVKILEGSGQTVP 428 (434)
T ss_dssp CTTTCGGGHHHHHHHHHHTTCCCC
T ss_pred eccccHHHHHHHHHHHHHcCCCCC
Confidence 9 4567777788887766666554
No 13
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.92 E-value=1.1e-24 Score=161.44 Aligned_cols=104 Identities=37% Similarity=0.622 Sum_probs=98.9
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|++++|.+++++|++|+.+|||||+++++|+|+|++++||+|++|+ +...|+||+||+||.|+.|.|++|+
T Consensus 289 ~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~------s~~~~~Qr~GR~gR~g~~g~~~~l~ 362 (400)
T 1s2m_A 289 HARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPK------TAETYLHRIGRSGRFGHLGLAINLI 362 (400)
T ss_dssp CTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCS------SHHHHHHHHCBSSCTTCCEEEEEEE
T ss_pred cCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCC------CHHHHHHhcchhcCCCCCceEEEEe
Confidence 8999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhCCCceecCCCChhhh
Q psy6850 81 DEHSVGVLKDIEKHFGKKIELLDTEDIDDE 110 (118)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (118)
.+.+...++.+++.++.++++++....+.+
T Consensus 363 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 392 (400)
T 1s2m_A 363 NWNDRFNLYKIEQELGTEIAAIPATIDKSL 392 (400)
T ss_dssp CGGGHHHHHHHHHHHTCCCEECCSSCCGGG
T ss_pred ccchHHHHHHHHHHhCCCcccccccccccc
Confidence 999999999999999999999987654443
No 14
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.91 E-value=1.5e-26 Score=176.04 Aligned_cols=114 Identities=54% Similarity=0.883 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|++.+|.+++++|++|+.+|||||+++++|+|+|++++||+||+|.+...+.+...|+||+||+||.|+.|.|++|+
T Consensus 364 h~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~ 443 (479)
T 3fmp_B 364 SGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMV 443 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEE
Confidence 89999999999999999999999999999999999999999999999975544447789999999999999999999999
Q ss_pred cCCc-HHHHHHHHHHhCCCceecCCCChhhhhhcc
Q psy6850 81 DEHS-VGVLKDIEKHFGKKIELLDTEDIDDEGNFR 114 (118)
Q Consensus 81 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (118)
.+.+ ...++.+++.++..+.+++.+..+++++++
T Consensus 444 ~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~e~~~ 478 (479)
T 3fmp_B 444 DSKHSMNILNRIQEHFNKKIERLDTDDLDEIEKIA 478 (479)
T ss_dssp -----------------------------------
T ss_pred cCcchHHHHHHHHHHhCCCceECCCccHHHHHhhh
Confidence 8654 788899999999999999999888888775
No 15
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.91 E-value=2e-24 Score=167.04 Aligned_cols=97 Identities=28% Similarity=0.460 Sum_probs=93.4
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|++++|.+++++|++|+.+|||||+++++|+|+|+|++||+||+|. ++..|+||+||+||.|+.|.|++|+
T Consensus 373 h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~------s~~~y~Qr~GRagR~g~~g~~i~~~ 446 (563)
T 3i5x_A 373 HGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPS------ELANYIHRIGRTARSGKEGSSVLFI 446 (563)
T ss_dssp STTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCS------STTHHHHHHTTSSCTTCCEEEEEEE
T ss_pred cCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCC------chhhhhhhcCccccCCCCceEEEEE
Confidence 8999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhCCCceecC
Q psy6850 81 DEHSVGVLKDIEKHFGKKIELLD 103 (118)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~ 103 (118)
.+.+...++.+++..+..+....
T Consensus 447 ~~~e~~~~~~l~~~~~~~~~~~~ 469 (563)
T 3i5x_A 447 CKDELPFVRELEDAKNIVIAKQE 469 (563)
T ss_dssp EGGGHHHHHHHHHHHCCCCCEEE
T ss_pred chhHHHHHHHHHHHhCCCccccc
Confidence 99999999999999888877655
No 16
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.91 E-value=6.6e-25 Score=162.98 Aligned_cols=101 Identities=45% Similarity=0.747 Sum_probs=81.3
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|++++|.+++++|++|+.+|||||+++++|+|+|++++||+|++|. +...|+||+||+||.|+.|.|++|+
T Consensus 311 h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~------s~~~~~Qr~GR~gR~g~~g~~~~~~ 384 (414)
T 3eiq_A 311 HGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT------NRENYIHRIGRGGRFGRKGVAINMV 384 (414)
T ss_dssp ---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCS------STHHHHHHSCCC-------CEEEEE
T ss_pred cCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCC------CHHHhhhhcCcccCCCCCceEEEEE
Confidence 8999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhCCCceecCCCCh
Q psy6850 81 DEHSVGVLKDIEKHFGKKIELLDTEDI 107 (118)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (118)
.+.+...++.++++++..+++++.+..
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (414)
T 3eiq_A 385 TEEDKRTLRDIETFYNTSIEEMPLNVA 411 (414)
T ss_dssp CSTHHHHHHHHHHHTTCCCEECCC---
T ss_pred cHHHHHHHHHHHHHHcCCccccChhhh
Confidence 999999999999999999999976643
No 17
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.91 E-value=3e-24 Score=167.24 Aligned_cols=97 Identities=28% Similarity=0.460 Sum_probs=93.3
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|++++|.+++++|++|+.+|||||+++++|+|+|+|++||+|++|. ++..|+||+||+||.|+.|.|++|+
T Consensus 322 hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~------s~~~y~Qr~GRagR~g~~g~~i~~~ 395 (579)
T 3sqw_A 322 HGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPS------ELANYIHRIGRTARSGKEGSSVLFI 395 (579)
T ss_dssp STTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCS------STTHHHHHHTTSSCTTCCEEEEEEE
T ss_pred cCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCC------CHHHhhhhccccccCCCCceEEEEE
Confidence 9999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhCCCceecC
Q psy6850 81 DEHSVGVLKDIEKHFGKKIELLD 103 (118)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~ 103 (118)
.+.+...++.+++..+..+....
T Consensus 396 ~~~e~~~~~~l~~~~~~~~~~~~ 418 (579)
T 3sqw_A 396 CKDELPFVRELEDAKNIVIAKQE 418 (579)
T ss_dssp EGGGHHHHHHHHHHHCCCCCEEE
T ss_pred cccHHHHHHHHHHHhCCCccccc
Confidence 99999999999999888776654
No 18
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.91 E-value=5.4e-24 Score=156.63 Aligned_cols=113 Identities=45% Similarity=0.756 Sum_probs=101.9
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|++++|.+++++|++|+.+|||||+++++|+|+|++++||+||+|+......++..|+||+||+||.|+.|.+++++
T Consensus 274 ~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~ 353 (395)
T 3pey_A 274 HGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFV 353 (395)
T ss_dssp CTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEE
Confidence 89999999999999999999999999999999999999999999999976666668899999999999999999999999
Q ss_pred cCC-cHHHHHHHHHHhC-CCceecCCCChhhhhhc
Q psy6850 81 DEH-SVGVLKDIEKHFG-KKIELLDTEDIDDEGNF 113 (118)
Q Consensus 81 ~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 113 (118)
... +...++.+++.++ ..+..++.+..+.+++.
T Consensus 354 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 388 (395)
T 3pey_A 354 HDKNSFNILSAIQKYFGDIEMTRVPTDDWDEVEKI 388 (395)
T ss_dssp CSHHHHHHHHHHHHHTTSCCCEECCSSCHHHHHHH
T ss_pred echHHHHHHHHHHHHhCCceeecCChHHHHHHHHH
Confidence 854 5667788989888 89999998887776653
No 19
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.90 E-value=1.1e-23 Score=153.62 Aligned_cols=97 Identities=38% Similarity=0.641 Sum_probs=94.3
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||++++++|.+++++|++|+.+|||||+++++|+|+|++++||++++|+ ++..|+||+||+||.|+.|.+++++
T Consensus 269 ~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~------s~~~~~Q~~GR~~R~g~~g~~~~~~ 342 (367)
T 1hv8_A 269 HGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQ------NPESYMHRIGRTGRAGKKGKAISII 342 (367)
T ss_dssp CSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCS------CHHHHHHHSTTTCCSSSCCEEEEEE
T ss_pred eCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCCC------CHHHhhhcccccccCCCccEEEEEE
Confidence 8999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhCCCceecC
Q psy6850 81 DEHSVGVLKDIEKHFGKKIELLD 103 (118)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~ 103 (118)
.+.+...+..+++.++.++++++
T Consensus 343 ~~~~~~~~~~i~~~~~~~~~~~~ 365 (367)
T 1hv8_A 343 NRREYKKLRYIERAMKLKIKKLK 365 (367)
T ss_dssp CTTSHHHHHHHHHHHTCCCCCBC
T ss_pred cHHHHHHHHHHHHHhCCCCceec
Confidence 99999999999999999988775
No 20
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.90 E-value=1.7e-23 Score=154.29 Aligned_cols=99 Identities=37% Similarity=0.720 Sum_probs=93.6
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|++++|.+++++|++|+.+|||||+++++|+|+|++++||+|++|+ +...|+||+||+||.|+.|.|++++
T Consensus 281 ~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~------s~~~~~Qr~GR~~R~g~~g~~~~~~ 354 (391)
T 1xti_A 281 HRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPE------DSDTYLHRVARAGRFGTKGLAITFV 354 (391)
T ss_dssp CTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCCS------SHHHHHHHHCBCSSSCCCCEEEEEE
T ss_pred eCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCCCC------CHHHHHHhcccccCCCCceEEEEEE
Confidence 8999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCC-cHHHHHHHHHHhCCCceecCCC
Q psy6850 81 DEH-SVGVLKDIEKHFGKKIELLDTE 105 (118)
Q Consensus 81 ~~~-~~~~~~~~~~~~~~~~~~~~~~ 105 (118)
.+. +...++.+++.++..+++++.+
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (391)
T 1xti_A 355 SDENDAKILNDVQDRFEVNISELPDE 380 (391)
T ss_dssp CSHHHHHHHHHHHHHTTCCCEECCSC
T ss_pred cccchHHHHHHHHHHhcCChhhCCcc
Confidence 866 4567799999999999998865
No 21
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.90 E-value=4e-24 Score=159.08 Aligned_cols=96 Identities=38% Similarity=0.659 Sum_probs=87.9
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|++++|.+++++|++|+.+|||||+++++|+|+|++++||+||+|. +...|+||+||+||.|+.|.|++|+
T Consensus 307 h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~------s~~~~~Qr~GR~gR~g~~g~~~~~~ 380 (417)
T 2i4i_A 307 HGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPS------DIEEYVHRIGRTGRVGNLGLATSFF 380 (417)
T ss_dssp CTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCS------SHHHHHHHHTTBCC--CCEEEEEEE
T ss_pred cCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCC------CHHHHHHhcCccccCCCCceEEEEE
Confidence 8999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhCCCceec
Q psy6850 81 DEHSVGVLKDIEKHFGKKIELL 102 (118)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~ 102 (118)
.+.+...++.+.+.+.....++
T Consensus 381 ~~~~~~~~~~l~~~~~~~~~~~ 402 (417)
T 2i4i_A 381 NERNINITKDLLDLLVEAKQEV 402 (417)
T ss_dssp CGGGGGGHHHHHHHHHHTTCCC
T ss_pred ccccHHHHHHHHHHHHHhcCcC
Confidence 9999988888888775544443
No 22
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.88 E-value=3.9e-23 Score=149.42 Aligned_cols=90 Identities=40% Similarity=0.641 Sum_probs=82.4
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|++++|.+++++|++|+.+|||||+++++|+|+|++++||+|++|+ ++..|+||+||+||.|+.|.+++|+
T Consensus 247 ~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~------s~~~~~Q~~GR~gR~g~~g~~~~~~ 320 (337)
T 2z0m_A 247 RGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQ------DLRTYIHRIGRTGRMGRKGEAITFI 320 (337)
T ss_dssp CTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCS------SHHHHHHHHTTBCGGGCCEEEEEEE
T ss_pred cCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCC------CHHHhhHhcCccccCCCCceEEEEE
Confidence 8999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhCC
Q psy6850 81 DEHSVGVLKDIEKHFGK 97 (118)
Q Consensus 81 ~~~~~~~~~~~~~~~~~ 97 (118)
. .+...++.+++.++.
T Consensus 321 ~-~~~~~~~~i~~~~~~ 336 (337)
T 2z0m_A 321 L-NEYWLEKEVKKVSQK 336 (337)
T ss_dssp S-SCHHHHHHHC-----
T ss_pred e-CcHHHHHHHHHHhcc
Confidence 9 888888888877653
No 23
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.88 E-value=2.8e-24 Score=158.54 Aligned_cols=100 Identities=43% Similarity=0.815 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|++++|.+++++|++|+.+|||||+++++|+|+|++++||+|++|+ +...|+||+||+||.|+.|.|++++
T Consensus 290 ~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~------s~~~~~Qr~GR~~R~g~~g~~~~~~ 363 (394)
T 1fuu_A 290 YSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPA------NKENYIHRIGRGGRFGRKGVAINFV 363 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCC------CHHHHHHHcCcccCCCCCceEEEEE
Confidence 8999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhCCCceecCCCC
Q psy6850 81 DEHSVGVLKDIEKHFGKKIELLDTED 106 (118)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (118)
.+.+...++.+++.++..+++++.+.
T Consensus 364 ~~~~~~~~~~l~~~~~~~~~~~~~~~ 389 (394)
T 1fuu_A 364 TNEDVGAMRELEKFYSTQIEELPSDI 389 (394)
T ss_dssp --------------------------
T ss_pred chhHHHHHHHHHHHhCCcccccCcch
Confidence 99999999999999999998887654
No 24
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.87 E-value=1.4e-22 Score=159.00 Aligned_cols=85 Identities=19% Similarity=0.235 Sum_probs=79.9
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|++++|.+++++|+.|+++|||||+++++|+|+|+|++||+|++|. +...|+||+||+||.|.+|.|++|+
T Consensus 298 h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~------s~~~y~Qr~GRaGR~G~~g~~i~l~ 371 (591)
T 2v1x_A 298 HANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSK------SMENYYQESGRAGRDDMKADCILYY 371 (591)
T ss_dssp CTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCS------SHHHHHHHHTTSCTTSSCEEEEEEE
T ss_pred cCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCC------CHHHHHHHhccCCcCCCCceEEEEE
Confidence 9999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCcHHHHHHH
Q psy6850 81 DEHSVGVLKDI 91 (118)
Q Consensus 81 ~~~~~~~~~~~ 91 (118)
.+.+...+..+
T Consensus 372 ~~~D~~~~~~~ 382 (591)
T 2v1x_A 372 GFGDIFRISSM 382 (591)
T ss_dssp CHHHHHHHHHH
T ss_pred ChHHHHHHHHH
Confidence 87766554443
No 25
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.87 E-value=1.9e-22 Score=156.09 Aligned_cols=87 Identities=23% Similarity=0.363 Sum_probs=81.5
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|++++|.+++++|++|+.+|||||+++++|+|+|+|++||+|++|. +...|+||+||+||.|.+|.|++++
T Consensus 267 h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~------s~~~y~Qr~GRaGR~g~~~~~~l~~ 340 (523)
T 1oyw_A 267 HAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPR------NIESYYQETGRAGRDGLPAEAMLFY 340 (523)
T ss_dssp CTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCS------SHHHHHHHHTTSCTTSSCEEEEEEE
T ss_pred cCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCC------CHHHHHHHhccccCCCCCceEEEEe
Confidence 9999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCcHHHHHHHHH
Q psy6850 81 DEHSVGVLKDIEK 93 (118)
Q Consensus 81 ~~~~~~~~~~~~~ 93 (118)
.+.+...++.+..
T Consensus 341 ~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 341 DPADMAWLRRCLE 353 (523)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 8777766555544
No 26
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.87 E-value=2.1e-23 Score=160.62 Aligned_cols=113 Identities=43% Similarity=0.744 Sum_probs=71.6
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|++++|.+++++|++|+.+|||||+++++|+|+|++++||+||+|.+...+.+...|+||+||+||.|+.|.+++|+
T Consensus 388 hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~ 467 (508)
T 3fho_A 388 TGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFV 467 (508)
T ss_dssp C-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEE
T ss_pred eCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEE
Confidence 89999999999999999999999999999999999999999999999965544458999999999999999999999999
Q ss_pred c-CCcHHHHHHHHHHhCCCceecCCCChhhhhhc
Q psy6850 81 D-EHSVGVLKDIEKHFGKKIELLDTEDIDDEGNF 113 (118)
Q Consensus 81 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (118)
. ..+...++.+++.++..+.+++.+..+.++.+
T Consensus 468 ~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~k~ 501 (508)
T 3fho_A 468 HDKKSWEEMNAIQEYFQRPITRVPTDDYEELEKV 501 (508)
T ss_dssp CTTTSSSSHHHHHHHSCCCCC-------------
T ss_pred eChHHHHHHHHHHHHHCCCcccCCCccHHHHHHH
Confidence 8 45677889999999999999998776665543
No 27
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.86 E-value=8.2e-23 Score=156.19 Aligned_cols=83 Identities=20% Similarity=0.281 Sum_probs=58.5
Q ss_pred CCCCCHHHHHHHHHHHhc-CCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEE
Q psy6850 1 MGKGPNTSSSSSLNSFTS-CKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINL 79 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~-g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~ 79 (118)
||+|++++|.+++++|++ |+++|||||+++++|+|+|+|++||+||+|+ ++..|+||+|| ||. +.|.++.|
T Consensus 432 ~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~------s~~~~~Qr~GR-gR~-~~g~~~~l 503 (555)
T 3tbk_A 432 ATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVG------NVIKMIQTRGR-GRA-RDSKCFLL 503 (555)
T ss_dssp --------------------CCSEEEECCCTTCCEETTSCSEEEEESCCS------SCCCEECSSCC-CTT-TSCEEEEE
T ss_pred ccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCC------CHHHHHHhcCc-CcC-CCceEEEE
Confidence 789999999999999999 9999999999999999999999999999999 99999999999 998 89999999
Q ss_pred ecCCcHHHHHHH
Q psy6850 80 VDEHSVGVLKDI 91 (118)
Q Consensus 80 ~~~~~~~~~~~~ 91 (118)
+.+.+......+
T Consensus 504 ~~~~~~~~~~~~ 515 (555)
T 3tbk_A 504 TSSADVIEKEKA 515 (555)
T ss_dssp ESCHHHHHHHHH
T ss_pred EcCCCHHHHHHH
Confidence 987766544444
No 28
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.85 E-value=1.8e-22 Score=159.27 Aligned_cols=100 Identities=25% Similarity=0.296 Sum_probs=54.2
Q ss_pred CCCCCHHHHHHHHHHHhc-CCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEE
Q psy6850 1 MGKGPNTSSSSSLNSFTS-CKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINL 79 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~-g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~ 79 (118)
||+|++++|.+++++|++ |+++|||||+++++|+|+|+|++||+||+|+ ++..|+||+|| ||. +.|.++.+
T Consensus 441 h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~------s~~~~~Qr~GR-GR~-~~g~~~~l 512 (696)
T 2ykg_A 441 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG------NVIKMIQTRGR-GRA-RGSKCFLL 512 (696)
T ss_dssp --------------------CCSCSEEEESSCCC---CCCSEEEEESCC--------CCCC-----------CCCEEEEE
T ss_pred ccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCEEEEeCCCC------CHHHHHHhhcc-CcC-CCceEEEE
Confidence 679999999999999998 9999999999999999999999999999999 99999999999 998 78999999
Q ss_pred ecCCcHHHHHHH----HHHhCCCceecCCCChh
Q psy6850 80 VDEHSVGVLKDI----EKHFGKKIELLDTEDID 108 (118)
Q Consensus 80 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 108 (118)
+...+......+ ++.++..+.++.....+
T Consensus 513 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 545 (696)
T 2ykg_A 513 TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEA 545 (696)
T ss_dssp ESCHHHHHHHHHHHHHHHHHHHHHHHHTTSCHH
T ss_pred ecCCCHHHHHHHHHHHHHHHHHHHHHhhccCHH
Confidence 987766554454 55556666666554433
No 29
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.84 E-value=1.1e-21 Score=150.38 Aligned_cols=77 Identities=23% Similarity=0.355 Sum_probs=35.7
Q ss_pred CCCCCHHHHHHHHHHHhc-CCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEE
Q psy6850 1 MGKGPNTSSSSSLNSFTS-CKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINL 79 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~-g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~ 79 (118)
||+|++++|.+++++|++ |+++|||||+++++|+|+|+|++||+||+|+ ++..|+||+|| ||. +.|.++.|
T Consensus 433 ~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~------s~~~~~Qr~GR-gR~-~~g~~~~l 504 (556)
T 4a2p_A 433 TTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSG------NVTKMIQVRGR-GRA-AGSKCILV 504 (556)
T ss_dssp ---------------------CCEEEEEC-----------CEEEEETCCS------CHHHHHHC----------CCEEEE
T ss_pred ccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCCC------CHHHHHHhcCC-CCC-CCceEEEE
Confidence 788999999999999999 9999999999999999999999999999999 99999999999 998 78999999
Q ss_pred ecCCcH
Q psy6850 80 VDEHSV 85 (118)
Q Consensus 80 ~~~~~~ 85 (118)
+.+.+.
T Consensus 505 ~~~~~~ 510 (556)
T 4a2p_A 505 TSKTEV 510 (556)
T ss_dssp ESCHHH
T ss_pred EeCcch
Confidence 986654
No 30
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.82 E-value=1.1e-20 Score=141.16 Aligned_cols=84 Identities=23% Similarity=0.436 Sum_probs=75.1
Q ss_pred HHHHhcCCCcEEEE----cCccccccCcCC-ccEEEEecCC--CCCCCCCCcchhhhhhcccccCC----CceEEEEEec
Q psy6850 13 LNSFTSCKEKVLIT----TNVLARGIDVEQ-VTIVINFDMP--IDMNGQADCETYLHRIGRTGRFG----KCGIAINLVD 81 (118)
Q Consensus 13 ~~~F~~g~~~iLv~----T~~~~~Gidi~~-v~~VI~~~~p--~~~~~~~~~~~y~qr~GR~gR~~----~~g~~~~~~~ 81 (118)
+++|++|+++|||| |+++++|+|+|+ |++||+||+| . +...|+||+||+||.| +.|.+++|+
T Consensus 290 ~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~------~~~~y~qr~GR~gR~g~~~~~~g~~i~~~- 362 (414)
T 3oiy_A 290 FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGP------DVYTYIQASGRSSRILNGVLVKGVSVIFE- 362 (414)
T ss_dssp HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTT------CHHHHHHHHGGGCCEETTEECCEEEEEEC-
T ss_pred HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEEECCCCCC------CHHHHHHHhCccccCCCCCCcceEEEEEE-
Confidence 99999999999999 999999999999 9999999999 8 9999999999999987 589999998
Q ss_pred CCcHHHHHHHHHHhC--CCceecCC
Q psy6850 82 EHSVGVLKDIEKHFG--KKIELLDT 104 (118)
Q Consensus 82 ~~~~~~~~~~~~~~~--~~~~~~~~ 104 (118)
.+...++.+++.++ .+++..+.
T Consensus 363 -~~~~~~~~l~~~~~~~~~~~~~~~ 386 (414)
T 3oiy_A 363 -EDEEIFESLKTRLLLIAEEEIIEE 386 (414)
T ss_dssp -CCHHHHHHHHHHHHHHHCCCEEEG
T ss_pred -ccHHHHHHHHHHhccccccccccc
Confidence 67788888888877 54544443
No 31
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.80 E-value=1.1e-19 Score=144.13 Aligned_cols=81 Identities=21% Similarity=0.271 Sum_probs=75.6
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecC-----CCCCCCCCCcchhhhhhcccccCCCceE
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDM-----PIDMNGQADCETYLHRIGRTGRFGKCGI 75 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~-----p~~~~~~~~~~~y~qr~GR~gR~~~~g~ 75 (118)
||++++.+|.+++++|+.|+++|||||+++++|+|+|+|++||++|. |. +..+|+||+||+||. ..|.
T Consensus 476 h~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~------s~~~~iQr~GRagR~-~~G~ 548 (661)
T 2d7d_A 476 HSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLR------SERSLIQTIGRAARN-AEGR 548 (661)
T ss_dssp CTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTT------SHHHHHHHHHTTTTS-TTCE
T ss_pred eCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCC------CHHHHHHHhCcccCC-CCCE
Confidence 89999999999999999999999999999999999999999999997 77 999999999999998 7899
Q ss_pred EEEEecCCcHHHH
Q psy6850 76 AINLVDEHSVGVL 88 (118)
Q Consensus 76 ~~~~~~~~~~~~~ 88 (118)
+++|+.+.+....
T Consensus 549 ~i~~~~~~~~~~~ 561 (661)
T 2d7d_A 549 VIMYADKITKSME 561 (661)
T ss_dssp EEEECSSCCHHHH
T ss_pred EEEEEeCCCHHHH
Confidence 9999987765433
No 32
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.80 E-value=2.9e-20 Score=149.51 Aligned_cols=77 Identities=23% Similarity=0.355 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHHHhc-CCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEE
Q psy6850 1 MGKGPNTSSSSSLNSFTS-CKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINL 79 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~-g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~ 79 (118)
||+|++++|.+++++|++ |+++|||||+++++|+|+|+|++||+||+|+ ++..|+||+|| ||. +.|.++.|
T Consensus 674 hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~------s~~~~iQr~GR-GR~-~~g~~i~l 745 (797)
T 4a2q_A 674 TTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSG------NVTKMIQVRGR-GRA-AGSKCILV 745 (797)
T ss_dssp --------------------CCSEEEEECC-------CCCSEEEEESCCS------CHHHHHTC---------CCCEEEE
T ss_pred CCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCCCC------CHHHHHHhcCC-CCC-CCceEEEE
Confidence 789999999999999999 9999999999999999999999999999999 99999999999 998 88999999
Q ss_pred ecCCcH
Q psy6850 80 VDEHSV 85 (118)
Q Consensus 80 ~~~~~~ 85 (118)
+.+.+.
T Consensus 746 ~~~~~~ 751 (797)
T 4a2q_A 746 TSKTEV 751 (797)
T ss_dssp ECCHHH
T ss_pred EeCCcH
Confidence 986554
No 33
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.80 E-value=4e-20 Score=145.94 Aligned_cols=62 Identities=21% Similarity=0.349 Sum_probs=57.1
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCC
Q psy6850 4 GPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFG 71 (118)
Q Consensus 4 l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~ 71 (118)
|++++|.+++++|++|+++|||||+++++|||+|+|++||+||+|+ ++..|+||+|||||.|
T Consensus 448 ~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~VI~~d~p~------s~~~~~Qr~GRArr~g 509 (699)
T 4gl2_A 448 MTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVT------NEIAMVQARGRARADE 509 (699)
T ss_dssp CCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCCCEEESCCC------CHHHHHHHHTTSCSSS
T ss_pred CCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCCEEEEeCCCC------CHHHHHHHcCCCCCCC
Confidence 9999999999999999999999999999999999999999999999 9999999999987664
No 34
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.79 E-value=2.2e-19 Score=142.38 Aligned_cols=81 Identities=19% Similarity=0.226 Sum_probs=75.3
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecC-----CCCCCCCCCcchhhhhhcccccCCCceE
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDM-----PIDMNGQADCETYLHRIGRTGRFGKCGI 75 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~-----p~~~~~~~~~~~y~qr~GR~gR~~~~g~ 75 (118)
||+|++.+|.+++++|+.|+++|||||+++++|+|+|+|++||++|. |. +..+|+||+||+||.+ .|.
T Consensus 470 h~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~------s~~~~iQr~GRagR~~-~G~ 542 (664)
T 1c4o_A 470 HHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLR------SERSLIQTIGRAARNA-RGE 542 (664)
T ss_dssp CTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGG------SHHHHHHHHGGGTTST-TCE
T ss_pred cCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCC------CHHHHHHHHCccCcCC-CCE
Confidence 89999999999999999999999999999999999999999999997 77 9999999999999984 899
Q ss_pred EEEEecCCcHHHH
Q psy6850 76 AINLVDEHSVGVL 88 (118)
Q Consensus 76 ~~~~~~~~~~~~~ 88 (118)
+++|+.+.+....
T Consensus 543 ~i~~~~~~~~~~~ 555 (664)
T 1c4o_A 543 VWLYADRVSEAMQ 555 (664)
T ss_dssp EEEECSSCCHHHH
T ss_pred EEEEEcCCCHHHH
Confidence 9999987665443
No 35
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.79 E-value=9e-20 Score=136.12 Aligned_cols=77 Identities=26% Similarity=0.342 Sum_probs=70.8
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEecC
Q psy6850 3 KGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLVDE 82 (118)
Q Consensus 3 ~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~~~ 82 (118)
+|++++|.+++++|++|+.+|||||+++++|+|+|++++||+||+|+ ++..|+||+||+||.|+ |.++.|+.+
T Consensus 402 ~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~------~~~~~~Qr~GR~~R~g~-g~~~~l~~~ 474 (494)
T 1wp9_A 402 GLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVP------SAIRSIQRRGRTGRHMP-GRVIILMAK 474 (494)
T ss_dssp ---CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCH------HHHHHHHHHTTSCSCCC-SEEEEEEET
T ss_pred cCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCC------CHHHHHHHHhhccCCCC-ceEEEEEec
Confidence 99999999999999999999999999999999999999999999999 99999999999999998 999999987
Q ss_pred CcHH
Q psy6850 83 HSVG 86 (118)
Q Consensus 83 ~~~~ 86 (118)
....
T Consensus 475 ~t~e 478 (494)
T 1wp9_A 475 GTRD 478 (494)
T ss_dssp TSHH
T ss_pred CCHH
Confidence 7544
No 36
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.78 E-value=5.5e-19 Score=140.61 Aligned_cols=95 Identities=18% Similarity=0.166 Sum_probs=80.7
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEE----ec----CCCCCCCCCCcchhhhhhcccccCC-
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVIN----FD----MPIDMNGQADCETYLHRIGRTGRFG- 71 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~----~~----~p~~~~~~~~~~~y~qr~GR~gR~~- 71 (118)
||+|++++|..+++.|++|+++|||||+++++|+|+|++++||+ || .|. +..+|.||+|||||.|
T Consensus 301 h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~------s~~~~~Qr~GRaGR~g~ 374 (720)
T 2zj8_A 301 HAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERI------PIIEVHQMLGRAGRPKY 374 (720)
T ss_dssp CTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEEC------CHHHHHHHHTTBCCTTT
T ss_pred cCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccC------CHHHHHHHHhhcCCCCC
Confidence 99999999999999999999999999999999999999999999 77 466 9999999999999987
Q ss_pred -CceEEEEEecCCcHHHHHHHHHHhCCCceecC
Q psy6850 72 -KCGIAINLVDEHSVGVLKDIEKHFGKKIELLD 103 (118)
Q Consensus 72 -~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (118)
..|.|+.+++..+.. ..+++++....+++.
T Consensus 375 ~~~G~~~~l~~~~~~~--~~~~~~~~~~~~~i~ 405 (720)
T 2zj8_A 375 DEVGEGIIVSTSDDPR--EVMNHYIFGKPEKLF 405 (720)
T ss_dssp CSEEEEEEECSSSCHH--HHHHHHTTSCCCCCC
T ss_pred CCCceEEEEecCccHH--HHHHHHhcCCCCCcE
Confidence 589999999877632 234445544444443
No 37
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.78 E-value=6e-19 Score=140.12 Aligned_cols=78 Identities=27% Similarity=0.382 Sum_probs=69.5
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEE----ec-------CCCCCCCCCCcchhhhhhccccc
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVIN----FD-------MPIDMNGQADCETYLHRIGRTGR 69 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~----~~-------~p~~~~~~~~~~~y~qr~GR~gR 69 (118)
||+|++++|..+++.|++|+++|||||+++++|+|+|++++||+ || .|. +..+|.||+|||||
T Consensus 319 h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~------s~~~~~Qr~GRaGR 392 (715)
T 2va8_A 319 HAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEI------PIMEYKQMSGRAGR 392 (715)
T ss_dssp CTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------------CHHHHHHHHTTBCC
T ss_pred CCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcC------CHHHHHHHhhhcCC
Confidence 99999999999999999999999999999999999999999999 99 787 99999999999999
Q ss_pred CC--CceEEEEEecCCc
Q psy6850 70 FG--KCGIAINLVDEHS 84 (118)
Q Consensus 70 ~~--~~g~~~~~~~~~~ 84 (118)
.| ..|.|+.+++..+
T Consensus 393 ~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 393 PGFDQIGESIVVVRDKE 409 (715)
T ss_dssp TTTCSCEEEEEECSCGG
T ss_pred CCCCCCceEEEEeCCch
Confidence 87 4899999987655
No 38
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.78 E-value=1.2e-19 Score=146.11 Aligned_cols=82 Identities=18% Similarity=0.259 Sum_probs=74.8
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLV 80 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~ 80 (118)
||+|++++|.+++++|++|+++|||||+++++|+|+|++++||++|.|. .+...|.||+||+||.|..|.|++++
T Consensus 620 HG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r-----~~l~~l~Qr~GRaGR~g~~g~~ill~ 694 (780)
T 1gm5_A 620 HGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPER-----FGLAQLHQLRGRVGRGGQEAYCFLVV 694 (780)
T ss_dssp CSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSS-----SCTTHHHHHHHTSCCSSTTCEEECCC
T ss_pred eCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCCC-----CCHHHHHHHhcccCcCCCCCEEEEEE
Confidence 9999999999999999999999999999999999999999999999985 25678999999999999999999998
Q ss_pred cCCcHHH
Q psy6850 81 DEHSVGV 87 (118)
Q Consensus 81 ~~~~~~~ 87 (118)
.+.+...
T Consensus 695 ~~~~~~~ 701 (780)
T 1gm5_A 695 GDVGEEA 701 (780)
T ss_dssp CSCCHHH
T ss_pred CCCChHH
Confidence 7544443
No 39
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.78 E-value=1.5e-19 Score=147.80 Aligned_cols=77 Identities=23% Similarity=0.355 Sum_probs=41.8
Q ss_pred CCCCCHHHHHHHHHHHhc-CCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEE
Q psy6850 1 MGKGPNTSSSSSLNSFTS-CKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINL 79 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~-g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~ 79 (118)
||+|++.+|.+++++|+. |+++|||||+++++|||+|+|++||+||+|+ ++..|+||+|| ||. ..|.++.|
T Consensus 674 hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~------s~~~~iQr~GR-GR~-~~g~vi~L 745 (936)
T 4a2w_A 674 TTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSG------NVTKMIQVRGR-GRA-AGSKCILV 745 (936)
T ss_dssp --------------------CCSEEEEECC------CCCCSEEEEESCCS------CSHHHHCC---------CCCEEEE
T ss_pred CCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCCCC------CHHHHHHhcCC-CCC-CCCEEEEE
Confidence 799999999999999999 9999999999999999999999999999999 99999999999 998 78899999
Q ss_pred ecCCcH
Q psy6850 80 VDEHSV 85 (118)
Q Consensus 80 ~~~~~~ 85 (118)
+...+.
T Consensus 746 i~~~t~ 751 (936)
T 4a2w_A 746 TSKTEV 751 (936)
T ss_dssp ESCHHH
T ss_pred EeCCCH
Confidence 886543
No 40
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.78 E-value=7.5e-19 Score=139.67 Aligned_cols=101 Identities=21% Similarity=0.326 Sum_probs=80.5
Q ss_pred CCCCCHHHHHHHHHHHhc--CCCcEEEEcCccccccCcCCccEEEEecCCCCC-C-------CCCCcchhhhhhcccccC
Q psy6850 1 MGKGPNTSSSSSLNSFTS--CKEKVLITTNVLARGIDVEQVTIVINFDMPIDM-N-------GQADCETYLHRIGRTGRF 70 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~--g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~-~-------~~~~~~~y~qr~GR~gR~ 70 (118)
||+|++++|.++++.|+. |+++|||||+++++|+|+ +++.||+++++.+. + ...+..+|+||+|||||.
T Consensus 351 HG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~ 429 (677)
T 3rc3_A 351 YGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRF 429 (677)
T ss_dssp CTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCT
T ss_pred eccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCC
Confidence 999999999999999999 889999999999999999 89999999993210 0 011899999999999999
Q ss_pred CC---ceEEEEEecCCcHHHHHHHHHHhCCCceecC
Q psy6850 71 GK---CGIAINLVDEHSVGVLKDIEKHFGKKIELLD 103 (118)
Q Consensus 71 ~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (118)
|. .|.|+.++ ..+...++++......++....
T Consensus 430 g~~g~~G~v~~l~-~~d~~~~~~~~~~~~~~i~~~~ 464 (677)
T 3rc3_A 430 SSRFKEGEVTTMN-HEDLSLLKEILKRPVDPIRAAG 464 (677)
T ss_dssp TSSCSSEEEEESS-TTHHHHHHHHHHSCCCCCCCEE
T ss_pred CCCCCCEEEEEEe-cchHHHHHHHHhcCcchhhhcc
Confidence 85 47777664 4555566666666556665543
No 41
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.77 E-value=8e-19 Score=144.42 Aligned_cols=85 Identities=26% Similarity=0.307 Sum_probs=77.7
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEE----ecC----CCCCCCCCCcchhhhhhcccccCCC
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVIN----FDM----PIDMNGQADCETYLHRIGRTGRFGK 72 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~----~~~----p~~~~~~~~~~~y~qr~GR~gR~~~ 72 (118)
||+|++.+|..+++.|++|.++|||||+++++|+|+|.+++||+ ||. |. ++..|+||+|||||.|.
T Consensus 413 Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~------s~~~y~Qr~GRAGR~G~ 486 (1010)
T 2xgj_A 413 HSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWV------SGGEYIQMSGRAGRRGL 486 (1010)
T ss_dssp STTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEEC------CHHHHHHHHTTBCCTTT
T ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccC------CHHHHhHhhhhcccCCC
Confidence 99999999999999999999999999999999999999999999 998 88 99999999999999986
Q ss_pred --ceEEEEEecCC-cHHHHHHH
Q psy6850 73 --CGIAINLVDEH-SVGVLKDI 91 (118)
Q Consensus 73 --~g~~~~~~~~~-~~~~~~~~ 91 (118)
.|.|++++.+. +...+..+
T Consensus 487 d~~G~vi~l~~~~~e~~~~~~l 508 (1010)
T 2xgj_A 487 DDRGIVIMMIDEKMEPQVAKGM 508 (1010)
T ss_dssp CSSEEEEEEECSCCCHHHHHHH
T ss_pred CCceEEEEEECCCCCHHHHHHH
Confidence 69999999865 55444444
No 42
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.77 E-value=4.2e-19 Score=145.54 Aligned_cols=100 Identities=15% Similarity=0.168 Sum_probs=79.7
Q ss_pred CCCCCHHHHHHHHHHHhcCC--CcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEE
Q psy6850 1 MGKGPNTSSSSSLNSFTSCK--EKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAIN 78 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~--~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~ 78 (118)
||+|++.+|.+++++|++|+ ++|||||+++++|+|+|++++||+||+|+ ++..|.||+||+||.|+.+.|++
T Consensus 535 hG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~------~~~~~~Q~~GR~~R~Gq~~~v~v 608 (968)
T 3dmq_A 535 HEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPF------NPDLLEQRIGRLDRIGQAHDIQI 608 (968)
T ss_dssp CTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCS------SHHHHHHHHHTTSCSSSCSCCEE
T ss_pred eCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCC------CHHHHHHHhhccccCCCCceEEE
Confidence 89999999999999999998 99999999999999999999999999999 99999999999999998876555
Q ss_pred EecCCcHHHHHHHHHHh--CCCceecCCCC
Q psy6850 79 LVDEHSVGVLKDIEKHF--GKKIELLDTED 106 (118)
Q Consensus 79 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 106 (118)
++...+...-..+.+.. +..+.+...+.
T Consensus 609 ~~~~~~~t~ee~i~~~~~~k~~~~~~~~~~ 638 (968)
T 3dmq_A 609 HVPYLEKTAQSVLVRWYHEGLDAFEHTCPT 638 (968)
T ss_dssp EEEEETTSHHHHHHHHHHHTTCCSSSCCSS
T ss_pred EEecCCChHHHHHHHHHHhCCCceecCCCC
Confidence 54322222223444444 44444444444
No 43
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.77 E-value=7.7e-19 Score=139.43 Aligned_cols=78 Identities=27% Similarity=0.405 Sum_probs=73.3
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEE----ec---CCCCCCCCCCcchhhhhhcccccCC--
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVIN----FD---MPIDMNGQADCETYLHRIGRTGRFG-- 71 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~----~~---~p~~~~~~~~~~~y~qr~GR~gR~~-- 71 (118)
||+|++++|..+++.|++|+++|||||+++++|+|+|++++||+ || .|. +..+|.||+|||||.|
T Consensus 303 h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~------s~~~~~Qr~GRaGR~g~~ 376 (702)
T 2p6r_A 303 HAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRI------KVSEYKQMAGRAGRPGMD 376 (702)
T ss_dssp CTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEEC------CHHHHHHHHTTBSCTTTC
T ss_pred cCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcC------CHHHHHHHhhhcCCCCCC
Confidence 99999999999999999999999999999999999999999999 77 576 9999999999999987
Q ss_pred CceEEEEEecCCc
Q psy6850 72 KCGIAINLVDEHS 84 (118)
Q Consensus 72 ~~g~~~~~~~~~~ 84 (118)
..|.|+.++...+
T Consensus 377 ~~G~~~~l~~~~~ 389 (702)
T 2p6r_A 377 ERGEAIIIVGKRD 389 (702)
T ss_dssp SCEEEEEECCGGG
T ss_pred CCceEEEEecCcc
Confidence 4899999998766
No 44
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.76 E-value=1e-19 Score=138.21 Aligned_cols=82 Identities=17% Similarity=0.226 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEE-------------------ecCCCCCCCCCCcchhhhhhccc
Q psy6850 7 TSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVIN-------------------FDMPIDMNGQADCETYLHRIGRT 67 (118)
Q Consensus 7 ~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~-------------------~~~p~~~~~~~~~~~y~qr~GR~ 67 (118)
++|.+++++|++|+++|||||+++++|+|+| +++||+ |+.|. +..+|+||+||+
T Consensus 210 ~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~------~~~~~~Qr~GR~ 282 (440)
T 1yks_A 210 KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRI------SASSAAQRRGRI 282 (440)
T ss_dssp SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEEC------CHHHHHHHHTTS
T ss_pred hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeecccccc------CHHHHHHhcccc
Confidence 4688999999999999999999999999999 999986 88898 999999999999
Q ss_pred ccC-CCceEEEEEe---cCCcHHHHHHHHHHh
Q psy6850 68 GRF-GKCGIAINLV---DEHSVGVLKDIEKHF 95 (118)
Q Consensus 68 gR~-~~~g~~~~~~---~~~~~~~~~~~~~~~ 95 (118)
||. +..|.|++|+ .+.+...++.++..+
T Consensus 283 GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~ 314 (440)
T 1yks_A 283 GRNPNRDGDSYYYSEPTSENNAHHVCWLEASM 314 (440)
T ss_dssp SCCTTCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred CCCCCCCceEEEEeccCChhhhhhhhhhhHHh
Confidence 997 6899999996 567777777777654
No 45
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.2e-18 Score=144.51 Aligned_cols=91 Identities=24% Similarity=0.244 Sum_probs=74.7
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCC--CCCcchhhhhhcccccCC--CceEE
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNG--QADCETYLHRIGRTGRFG--KCGIA 76 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~--~~~~~~y~qr~GR~gR~~--~~g~~ 76 (118)
||+|++.+|..+++.|++|+++|||||+++++|+|+|++++||+++.|.+... ..++..|+||+|||||.| ..|.|
T Consensus 511 Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ 590 (1108)
T 3l9o_A 511 HSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIV 590 (1108)
T ss_dssp CSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEE
T ss_pred cCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEE
Confidence 99999999999999999999999999999999999999999998887652221 126677999999999999 68999
Q ss_pred EEEecCC-cHHHHHHH
Q psy6850 77 INLVDEH-SVGVLKDI 91 (118)
Q Consensus 77 ~~~~~~~-~~~~~~~~ 91 (118)
++++.+. +...+..+
T Consensus 591 ill~~~~~~~~~~~~l 606 (1108)
T 3l9o_A 591 IMMIDEKMEPQVAKGM 606 (1108)
T ss_dssp EEEECCCCCHHHHHHH
T ss_pred EEEecCCcCHHHHHHH
Confidence 9999865 44444444
No 46
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.75 E-value=2.4e-19 Score=144.33 Aligned_cols=77 Identities=21% Similarity=0.176 Sum_probs=69.5
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcC--------CccEEEEecCCCCCCCCCCcchhhhhhcccccCCC
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVE--------QVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGK 72 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~--------~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~ 72 (118)
||++++.+|..+.+.|+.| .|+||||+++||+|++ ++.+||||++|. +...|+||+||+||.|.
T Consensus 463 hg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~------s~r~y~hr~GRTGRqG~ 534 (844)
T 1tf5_A 463 NAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHE------SRRIDNQLRGRSGRQGD 534 (844)
T ss_dssp CSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCS------SHHHHHHHHTTSSGGGC
T ss_pred eCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCC------CHHHHHhhcCccccCCC
Confidence 8999888887776667665 6999999999999999 788999999999 99999999999999999
Q ss_pred ceEEEEEecCCcH
Q psy6850 73 CGIAINLVDEHSV 85 (118)
Q Consensus 73 ~g~~~~~~~~~~~ 85 (118)
+|.+++|++.+|.
T Consensus 535 ~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 535 PGITQFYLSMEDE 547 (844)
T ss_dssp CEEEEEEEETTSS
T ss_pred CCeEEEEecHHHH
Confidence 9999999996653
No 47
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.74 E-value=1.1e-18 Score=137.53 Aligned_cols=82 Identities=13% Similarity=0.111 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEE--------------------EEecCCCCCCCCCCcchhhhhhcc
Q psy6850 7 TSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIV--------------------INFDMPIDMNGQADCETYLHRIGR 66 (118)
Q Consensus 7 ~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~V--------------------I~~~~p~~~~~~~~~~~y~qr~GR 66 (118)
++|.+++++|++|+.+|||||+++++|+|+| +++| |+|+.|. +..+|+||+||
T Consensus 388 ~~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~------s~~~yiQR~GR 460 (618)
T 2whx_A 388 KTFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPV------TPASAAQRRGR 460 (618)
T ss_dssp TTHHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEEC------CHHHHHHHHTT
T ss_pred HHHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccC------CHHHHHHhccc
Confidence 4788999999999999999999999999997 8888 7788898 99999999999
Q ss_pred cccCCC-ceEEEEEec---CCcHHHHHHHHHHh
Q psy6850 67 TGRFGK-CGIAINLVD---EHSVGVLKDIEKHF 95 (118)
Q Consensus 67 ~gR~~~-~g~~~~~~~---~~~~~~~~~~~~~~ 95 (118)
+||.|. .|.+++|+. +.+...++.+++.+
T Consensus 461 aGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i 493 (618)
T 2whx_A 461 IGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKM 493 (618)
T ss_dssp SSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHH
T ss_pred cCCCCCCCCeEEEEccCCchhhHHHHHHHHhHh
Confidence 999964 999999997 77777778887764
No 48
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.74 E-value=3.3e-18 Score=122.96 Aligned_cols=77 Identities=17% Similarity=0.211 Sum_probs=57.4
Q ss_pred CCCCCHHHHHHHHHHHhcC-CCc-EEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceE--E
Q psy6850 1 MGKGPNTSSSSSLNSFTSC-KEK-VLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGI--A 76 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g-~~~-iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~--~ 76 (118)
||++++++|.+++++|+++ +++ +|++|+++++|+|++.++.||+||+|| ++..|.||+||++|.|+.+. +
T Consensus 144 ~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~w------np~~~~Q~~gR~~R~Gq~~~v~v 217 (271)
T 1z5z_A 144 YGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWW------NPAVEDQATDRVYRIGQTRNVIV 217 (271)
T ss_dssp CTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCS------CTTTC--------------CCEE
T ss_pred ECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEEECCCC------ChhHHHHHHHhccccCCCCceEE
Confidence 8999999999999999999 777 789999999999999999999999999 99999999999999998554 4
Q ss_pred EEEecCC
Q psy6850 77 INLVDEH 83 (118)
Q Consensus 77 ~~~~~~~ 83 (118)
+.|+...
T Consensus 218 ~~li~~~ 224 (271)
T 1z5z_A 218 HKLISVG 224 (271)
T ss_dssp EEEEETT
T ss_pred EEEeeCC
Confidence 6666655
No 49
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.73 E-value=4.6e-18 Score=140.42 Aligned_cols=92 Identities=20% Similarity=0.283 Sum_probs=71.2
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEE----cCccccccCcCCc-cEEEEecCCC--------------------------
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLIT----TNVLARGIDVEQV-TIVINFDMPI-------------------------- 49 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~----T~~~~~Gidi~~v-~~VI~~~~p~-------------------------- 49 (118)
||+| .+++++|++|+++|||| |+++++|+|+|+| ++||+||+|.
T Consensus 305 hg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (1054)
T 1gku_B 305 TATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNV 379 (1054)
T ss_dssp TTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCH
T ss_pred eccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhH
Confidence 7887 48899999999999999 9999999999996 9999999990
Q ss_pred -----------------------------CCCCC----------CCcchhhhhhcccccCCCceE--EEEEecCCcHHHH
Q psy6850 50 -----------------------------DMNGQ----------ADCETYLHRIGRTGRFGKCGI--AINLVDEHSVGVL 88 (118)
Q Consensus 50 -----------------------------~~~~~----------~~~~~y~qr~GR~gR~~~~g~--~~~~~~~~~~~~~ 88 (118)
+.+.+ .+..+|+||+||+||.|..|. +++++...+...+
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~ 459 (1054)
T 1gku_B 380 DEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELL 459 (1054)
T ss_dssp HHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHH
Confidence 00000 188999999999999877664 7778777888888
Q ss_pred HHHHHHhCC
Q psy6850 89 KDIEKHFGK 97 (118)
Q Consensus 89 ~~~~~~~~~ 97 (118)
..+++.++.
T Consensus 460 ~~l~~~l~~ 468 (1054)
T 1gku_B 460 SAFIERAKL 468 (1054)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhh
Confidence 888887763
No 50
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.73 E-value=2.8e-19 Score=143.88 Aligned_cols=78 Identities=23% Similarity=0.387 Sum_probs=73.1
Q ss_pred CCCCCHHHHHHHHHHHh-----cCCCcEEEEcCccccccCcCCccEEEEecC------------------CCCCCCCCCc
Q psy6850 1 MGKGPNTSSSSSLNSFT-----SCKEKVLITTNVLARGIDVEQVTIVINFDM------------------PIDMNGQADC 57 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~-----~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~------------------p~~~~~~~~~ 57 (118)
||+|++++|.++++.|+ .|+.+|||||+++++|+|+|+|++||++++ |. +.
T Consensus 345 hg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~------S~ 418 (773)
T 2xau_A 345 YGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPI------SK 418 (773)
T ss_dssp CTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEEC------CH
T ss_pred CCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccC------CH
Confidence 89999999999999999 999999999999999999999999999887 77 99
Q ss_pred chhhhhhcccccCCCceEEEEEecCCcH
Q psy6850 58 ETYLHRIGRTGRFGKCGIAINLVDEHSV 85 (118)
Q Consensus 58 ~~y~qr~GR~gR~~~~g~~~~~~~~~~~ 85 (118)
.+|+||+|||||. .+|.|+.|+++.+.
T Consensus 419 ~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 419 ASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp HHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred HHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 9999999999999 89999999975443
No 51
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.73 E-value=2.4e-18 Score=130.55 Aligned_cols=77 Identities=19% Similarity=0.356 Sum_probs=70.3
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCc---eEEE
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKC---GIAI 77 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~---g~~~ 77 (118)
||++++.+|.+++++|++|+.+|||||+++++|+|+|++++||++|.|+ ++..|.||+||+||.|+. ..++
T Consensus 375 ~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~------s~~~~~Q~~GR~~R~g~~k~~~~i~ 448 (472)
T 2fwr_A 375 THRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSG------SAREYIQRLGRILRPSKGKKEAVLY 448 (472)
T ss_dssp CSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSS------CCHHHHHHHHHSBCCCTTTCCEEEE
T ss_pred eCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCC------CHHHHHHHHhhccCCCCCCceEEEE
Confidence 8999999999999999999999999999999999999999999999999 999999999999998843 4555
Q ss_pred EEecCC
Q psy6850 78 NLVDEH 83 (118)
Q Consensus 78 ~~~~~~ 83 (118)
.++...
T Consensus 449 ~lv~~~ 454 (472)
T 2fwr_A 449 ELISRG 454 (472)
T ss_dssp EEEECS
T ss_pred EEEeCC
Confidence 666643
No 52
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.72 E-value=2.3e-18 Score=131.68 Aligned_cols=73 Identities=16% Similarity=0.138 Sum_probs=68.0
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEc-CccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEE
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITT-NVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINL 79 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T-~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~ 79 (118)
||+|++++|.+++++|++|+.+||||| +++++|+|+|+++.||+++.|+ ++..|.|++||+||.|..+.++.+
T Consensus 378 ~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~------s~~~~~Q~~GR~gR~g~~~~~v~i 451 (510)
T 2oca_A 378 SGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHGVK------SKIIVLQTIGRVLRKHGSKTIATV 451 (510)
T ss_dssp SSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSCCC------SCCHHHHHHHHHHTTTCCCCCCEE
T ss_pred ECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEeCCCC------CHHHHHHHHhcccccCCCCceEEE
Confidence 899999999999999999999999999 9999999999999999999999 999999999999999876633333
No 53
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.72 E-value=3.7e-18 Score=135.62 Aligned_cols=82 Identities=20% Similarity=0.210 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEE--------------------ecCCCCCCCCCCcchhhhhhcc
Q psy6850 7 TSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVIN--------------------FDMPIDMNGQADCETYLHRIGR 66 (118)
Q Consensus 7 ~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~--------------------~~~p~~~~~~~~~~~y~qr~GR 66 (118)
++|.+++++|++|+++|||||+++++|+|+| +++||+ ||+|. +.++|+||+||
T Consensus 443 ~eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~------s~~~y~Qr~GR 515 (673)
T 2wv9_A 443 KSYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAI------TSASAAQRRGR 515 (673)
T ss_dssp SSHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEEC------CHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCC------CHHHHHHHhhc
Confidence 3899999999999999999999999999999 999998 56888 99999999999
Q ss_pred cccC-CCceEEEEEe---cCCcHHHHHHHHHHh
Q psy6850 67 TGRF-GKCGIAINLV---DEHSVGVLKDIEKHF 95 (118)
Q Consensus 67 ~gR~-~~~g~~~~~~---~~~~~~~~~~~~~~~ 95 (118)
+||. ++.|.|++|+ .+.+...++.++...
T Consensus 516 aGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 516 VGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp SSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred cCCCCCCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 9998 7899999996 466666666666654
No 54
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.71 E-value=1.4e-17 Score=138.59 Aligned_cols=77 Identities=21% Similarity=0.248 Sum_probs=72.5
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecC-CCCCCCCCCcchhhhhhcccccCCCceEEEEE
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDM-PIDMNGQADCETYLHRIGRTGRFGKCGIAINL 79 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~-p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~ 79 (118)
||+|++++|.+++++|++|+.+|||||+++++|+|+|++++||.++. +. +...|+||+||+||.|+.|.|+++
T Consensus 845 hg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~------~l~~l~Qr~GRvgR~g~~g~~~ll 918 (1151)
T 2eyq_A 845 HGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHF------GLAQLHQLRGRVGRSHHQAYAWLL 918 (1151)
T ss_dssp CSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTSS------CHHHHHHHHTTCCBTTBCEEEEEE
T ss_pred eCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCCCC------CHHHHHHHHhccCcCCCceEEEEE
Confidence 99999999999999999999999999999999999999999999987 45 788999999999999999999999
Q ss_pred ecCC
Q psy6850 80 VDEH 83 (118)
Q Consensus 80 ~~~~ 83 (118)
+.+.
T Consensus 919 ~~~~ 922 (1151)
T 2eyq_A 919 TPHP 922 (1151)
T ss_dssp ECCG
T ss_pred ECCc
Confidence 8754
No 55
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.71 E-value=7.1e-19 Score=134.14 Aligned_cols=70 Identities=21% Similarity=0.247 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEE--------------------ecCCCCCCCCCCcchhhhhhcc
Q psy6850 7 TSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVIN--------------------FDMPIDMNGQADCETYLHRIGR 66 (118)
Q Consensus 7 ~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~--------------------~~~p~~~~~~~~~~~y~qr~GR 66 (118)
++|.+++++|++|+.+|||||+++++|+|+|+ ++||+ |+.|. +..+|+||+||
T Consensus 223 ~~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~------s~~~~~QR~GR 295 (459)
T 2z83_A 223 KSYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPI------TSASAAQRRGR 295 (459)
T ss_dssp TCCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEEC------CHHHHHHHHTT
T ss_pred HHHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCC------CHHHHHHhccc
Confidence 36788999999999999999999999999999 99999 77998 99999999999
Q ss_pred cccCCC-ceEEEEEecCC
Q psy6850 67 TGRFGK-CGIAINLVDEH 83 (118)
Q Consensus 67 ~gR~~~-~g~~~~~~~~~ 83 (118)
+||.|. .|.+++|+...
T Consensus 296 aGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 296 VGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp SSCCTTCCCEEEEECSCC
T ss_pred cCCCCCCCCeEEEEEccc
Confidence 999997 99999999864
No 56
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.70 E-value=9.9e-18 Score=127.50 Aligned_cols=68 Identities=16% Similarity=0.168 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEec--------------------CCCCCCCCCCcchhhhhhcc
Q psy6850 7 TSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFD--------------------MPIDMNGQADCETYLHRIGR 66 (118)
Q Consensus 7 ~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~--------------------~p~~~~~~~~~~~y~qr~GR 66 (118)
+++.+++++|++|+.+|||||+++++|+|+|+ ++||+|| .|. +..+|+||+||
T Consensus 221 ~~~~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~------s~~~y~Qr~GR 293 (451)
T 2jlq_A 221 KTFDTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPV------TPASAAQRRGR 293 (451)
T ss_dssp TTHHHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEEC------CHHHHHHHHTT
T ss_pred HHHHHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccC------CHHHHHHhccc
Confidence 34578999999999999999999999999999 9999998 888 99999999999
Q ss_pred cccCCC-ceEEEEEec
Q psy6850 67 TGRFGK-CGIAINLVD 81 (118)
Q Consensus 67 ~gR~~~-~g~~~~~~~ 81 (118)
+||.|. .|.++.|..
T Consensus 294 aGR~g~~~g~~~~~~~ 309 (451)
T 2jlq_A 294 IGRNPAQEDDQYVFSG 309 (451)
T ss_dssp SSCCTTCCCEEEEECS
T ss_pred cCCCCCCCccEEEEeC
Confidence 999998 889988875
No 57
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.69 E-value=1.9e-17 Score=131.91 Aligned_cols=77 Identities=21% Similarity=0.161 Sum_probs=66.1
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcC--------CccEEEEecCCCCCCCCCCcchhhhhhcccccCCC
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVE--------QVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGK 72 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~--------~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~ 72 (118)
||++.+.++..+.+.|+.| .|+||||+++||+|++ +..+||+|++|. +...|+||+||+||.|.
T Consensus 505 hgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pe------s~r~y~qriGRTGRqG~ 576 (822)
T 3jux_A 505 NAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHE------SRRIDNQLRGRAGRQGD 576 (822)
T ss_dssp CSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCS------SHHHHHHHHTTSSCSSC
T ss_pred eCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCC------CHHHHHHhhCccccCCC
Confidence 7775555555555666655 6999999999999998 556999999999 99999999999999999
Q ss_pred ceEEEEEecCCcH
Q psy6850 73 CGIAINLVDEHSV 85 (118)
Q Consensus 73 ~g~~~~~~~~~~~ 85 (118)
+|.+++|++.+|.
T Consensus 577 ~G~a~~fvsleD~ 589 (822)
T 3jux_A 577 PGESIFFLSLEDD 589 (822)
T ss_dssp CCEEEEEEETTSH
T ss_pred CeeEEEEechhHH
Confidence 9999999997774
No 58
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.69 E-value=4.3e-17 Score=134.07 Aligned_cols=85 Identities=22% Similarity=0.259 Sum_probs=70.8
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEE--------EecCCCCCCCCCCcchhhhhhcccccCC-
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVI--------NFDMPIDMNGQADCETYLHRIGRTGRFG- 71 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI--------~~~~p~~~~~~~~~~~y~qr~GR~gR~~- 71 (118)
||+|++.+|..+++.|+.|+++|||||+++++|+|+|++.+|+ +++.|. ++.+|+||+|||||.|
T Consensus 406 H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~VVi~~~~k~dg~~~~~~------s~~~y~Qr~GRAGR~G~ 479 (997)
T 4a4z_A 406 HGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLREL------TPGEFTQMAGRAGRRGL 479 (997)
T ss_dssp CTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCSEEEESCSEEEETTEEEEC------CHHHHHHHHGGGCCTTT
T ss_pred cCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCCceEEEeccccccCccCCCC------CHHHHhHHhcccccCCC
Confidence 9999999999999999999999999999999999999965555 233444 8899999999999988
Q ss_pred -CceEEEEEec--CCcHHHHHHH
Q psy6850 72 -KCGIAINLVD--EHSVGVLKDI 91 (118)
Q Consensus 72 -~~g~~~~~~~--~~~~~~~~~~ 91 (118)
..|.|+.++. ..+...++.+
T Consensus 480 ~~~G~vi~l~~~~~~~~~~~~~~ 502 (997)
T 4a4z_A 480 DSTGTVIVMAYNSPLSIATFKEV 502 (997)
T ss_dssp CSSEEEEEECCSSCCCHHHHHHH
T ss_pred CcceEEEEecCCCcchHHHHHHH
Confidence 5788988884 3345555554
No 59
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.68 E-value=2.8e-18 Score=136.00 Aligned_cols=91 Identities=21% Similarity=0.308 Sum_probs=73.9
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEE----------Eec-----------CCCCCCCCCCcch
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVI----------NFD-----------MPIDMNGQADCET 59 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI----------~~~-----------~p~~~~~~~~~~~ 59 (118)
||+|++++ |+++..+||||||++++|||+| +++|| ||| +|. +.++
T Consensus 427 HG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~------s~~s 492 (666)
T 3o8b_A 427 YRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQ------DAVS 492 (666)
T ss_dssp CTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEEC------BHHH
T ss_pred cCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcC------CHHH
Confidence 89999876 5567779999999999999997 99988 677 888 9999
Q ss_pred hhhhhcccccCCCceEEEEEecCCcHHH--H--HHHHHHhCCCceecCCCCh
Q psy6850 60 YLHRIGRTGRFGKCGIAINLVDEHSVGV--L--KDIEKHFGKKIELLDTEDI 107 (118)
Q Consensus 60 y~qr~GR~gR~~~~g~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~ 107 (118)
|+||+||+|| ++.|. +.|+.+.+... + ..+++..+..+.++..+..
T Consensus 493 yiQRiGRtGR-g~~G~-i~lvt~~e~~~~~l~~~~i~~~~~~~~~~~~l~~~ 542 (666)
T 3o8b_A 493 RSQRRGRTGR-GRRGI-YRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPA 542 (666)
T ss_dssp HHHHHTTBCS-SSCEE-EEESCCCCBCSSBCCHHHHHHHHHHHHHTSCCCHH
T ss_pred HHHHhccCCC-CCCCE-EEEEecchhhcccccHHHHHHHhcCCcccccCCch
Confidence 9999999999 89999 99998766544 3 6666666666666555443
No 60
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.67 E-value=7e-17 Score=138.23 Aligned_cols=91 Identities=14% Similarity=0.152 Sum_probs=76.9
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEE----ecCCCCCCCCCCcchhhhhhcccccCCC--ce
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVIN----FDMPIDMNGQADCETYLHRIGRTGRFGK--CG 74 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~----~~~p~~~~~~~~~~~y~qr~GR~gR~~~--~g 74 (118)
||+|++++|..+.+.|++|.++|||||+.+++|+|+|.+.+||. ||.......+.+..+|+||+|||||.|. .|
T Consensus 1220 HagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G 1299 (1724)
T 4f92_B 1220 HEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEG 1299 (1724)
T ss_dssp CTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCE
T ss_pred CCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCce
Confidence 99999999999999999999999999999999999999999984 4432211222388999999999999986 79
Q ss_pred EEEEEecCCcHHHHHHH
Q psy6850 75 IAINLVDEHSVGVLKDI 91 (118)
Q Consensus 75 ~~~~~~~~~~~~~~~~~ 91 (118)
.|++++.+.+...++.+
T Consensus 1300 ~avll~~~~~~~~~~~l 1316 (1724)
T 4f92_B 1300 RCVIMCQGSKKDFFKKF 1316 (1724)
T ss_dssp EEEEEEEGGGHHHHHHH
T ss_pred EEEEEecchHHHHHHHH
Confidence 99999988877766554
No 61
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.67 E-value=2.4e-17 Score=132.67 Aligned_cols=77 Identities=21% Similarity=0.175 Sum_probs=70.9
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCC--------------------------------c-----cEEE
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQ--------------------------------V-----TIVI 43 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~--------------------------------v-----~~VI 43 (118)
||++.+.++..+.+.|+.| .|+||||+++||+||+. | .+||
T Consensus 472 nak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI 549 (853)
T 2fsf_A 472 NAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHII 549 (853)
T ss_dssp CTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEE
T ss_pred cCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEE
Confidence 7888888888888999988 69999999999999986 3 5999
Q ss_pred EecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEecCCcH
Q psy6850 44 NFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLVDEHSV 85 (118)
Q Consensus 44 ~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~~~~~~ 85 (118)
+|++|. +...|.||+||+||.|.+|.+++|++.+|.
T Consensus 550 ~te~pe------s~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 550 GTERHE------SRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp ESSCCS------SHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred EccCCC------CHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 999999 999999999999999999999999997764
No 62
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.66 E-value=5.9e-17 Score=134.34 Aligned_cols=85 Identities=21% Similarity=0.402 Sum_probs=68.5
Q ss_pred HHHHHHHHhcCCCcEEEE----cCccccccCcCC-ccEEEEecCCCC---------------------------------
Q psy6850 9 SSSSLNSFTSCKEKVLIT----TNVLARGIDVEQ-VTIVINFDMPID--------------------------------- 50 (118)
Q Consensus 9 r~~~~~~F~~g~~~iLv~----T~~~~~Gidi~~-v~~VI~~~~p~~--------------------------------- 50 (118)
|.+ +++|++|+++|||| |+++++|+|+|+ |++|||||+|.+
T Consensus 344 rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 422 (1104)
T 4ddu_A 344 EKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVE 422 (1104)
T ss_dssp HHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHH
T ss_pred HHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555 99999999999999 999999999999 999999999960
Q ss_pred ----------------------------CCCC-----CCcchhhhhhcccccCCC----ceEEEEEecCCcHHHHHHHHH
Q psy6850 51 ----------------------------MNGQ-----ADCETYLHRIGRTGRFGK----CGIAINLVDEHSVGVLKDIEK 93 (118)
Q Consensus 51 ----------------------------~~~~-----~~~~~y~qr~GR~gR~~~----~g~~~~~~~~~~~~~~~~~~~ 93 (118)
.+++ -+..+|+||+|||||.+. .|.+++++ ++...++.+++
T Consensus 423 ~~~e~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~--~d~~~~~~l~~ 500 (1104)
T 4ddu_A 423 ELRKIAKEHLTQKEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKT 500 (1104)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC--CCHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEE--ecHHHHHHHHH
Confidence 0111 056689999999999654 45666665 77788888887
Q ss_pred HhC
Q psy6850 94 HFG 96 (118)
Q Consensus 94 ~~~ 96 (118)
.++
T Consensus 501 ~~~ 503 (1104)
T 4ddu_A 501 RLL 503 (1104)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 63
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.65 E-value=8.3e-17 Score=137.75 Aligned_cols=92 Identities=17% Similarity=0.216 Sum_probs=78.4
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEE----ecCCCCCCCCCCcchhhhhhcccccCC--Cce
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVIN----FDMPIDMNGQADCETYLHRIGRTGRFG--KCG 74 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~----~~~p~~~~~~~~~~~y~qr~GR~gR~~--~~g 74 (118)
||+|++++|..+.+.|++|.++|||||+.+++|+|+|.+++||. ||.......+.+..+|.||+|||||.| ..|
T Consensus 385 HagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G 464 (1724)
T 4f92_B 385 HAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKG 464 (1724)
T ss_dssp CSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCE
T ss_pred cCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCcc
Confidence 99999999999999999999999999999999999999999985 654432222338899999999999987 479
Q ss_pred EEEEEecCCcHHHHHHHH
Q psy6850 75 IAINLVDEHSVGVLKDIE 92 (118)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~ 92 (118)
.++.++...+...+..+.
T Consensus 465 ~~ii~~~~~~~~~~~~ll 482 (1724)
T 4f92_B 465 EGILITSHGELQYYLSLL 482 (1724)
T ss_dssp EEEEEEESTTCCHHHHHT
T ss_pred EEEEEecchhHHHHHHHH
Confidence 999999888777666553
No 64
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.64 E-value=1.8e-16 Score=120.08 Aligned_cols=70 Identities=21% Similarity=0.176 Sum_probs=60.8
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCccE-----------------EEEecCCCCCCCCCCcchhhhh
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTI-----------------VINFDMPIDMNGQADCETYLHR 63 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~-----------------VI~~~~p~~~~~~~~~~~y~qr 63 (118)
||+ +|.+++++|++|+++|||||+++++|+|+| +.. ||+++.|. +..+|+||
T Consensus 202 hg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~------~~~~~~Qr 270 (431)
T 2v6i_A 202 NRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAI------TPASAAQR 270 (431)
T ss_dssp STT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEEC------CHHHHHHH
T ss_pred CCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccC------CHHHHHHh
Confidence 665 688999999999999999999999999999 544 67889998 99999999
Q ss_pred hcccccCCC-ceEEEEEec
Q psy6850 64 IGRTGRFGK-CGIAINLVD 81 (118)
Q Consensus 64 ~GR~gR~~~-~g~~~~~~~ 81 (118)
+||+||.|. .|.++++..
T Consensus 271 ~GR~GR~g~~~~~~~~~~~ 289 (431)
T 2v6i_A 271 RGRIGRNPEKLGDIYAYSG 289 (431)
T ss_dssp HTTSSCCTTCCCCEEEECS
T ss_pred hhccCCCCCCCCeEEEEcC
Confidence 999999985 566666653
No 65
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.64 E-value=5.6e-16 Score=118.24 Aligned_cols=78 Identities=17% Similarity=0.215 Sum_probs=65.6
Q ss_pred CCCCCHHHHHHHHHHHhcC-CCc-EEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceE--E
Q psy6850 1 MGKGPNTSSSSSLNSFTSC-KEK-VLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGI--A 76 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g-~~~-iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~--~ 76 (118)
||++++++|.+++++|+++ ..+ +|++|+++++|+|+|.++.||+||+|+ ++..|.||+||++|.|+... +
T Consensus 373 ~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~------~~~~~~Q~~gR~~R~Gq~~~v~v 446 (500)
T 1z63_A 373 YGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWW------NPAVEDQATDRVYRIGQTRNVIV 446 (500)
T ss_dssp ETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCS------CC---CHHHHTTTTTTTTSCEEE
T ss_pred ECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCCCC------CcchHHHHHHHHHHcCCCCeeEE
Confidence 7999999999999999999 565 789999999999999999999999999 99999999999999987544 4
Q ss_pred EEEecCCc
Q psy6850 77 INLVDEHS 84 (118)
Q Consensus 77 ~~~~~~~~ 84 (118)
+.++....
T Consensus 447 ~~lv~~~t 454 (500)
T 1z63_A 447 HKLISVGT 454 (500)
T ss_dssp EEEEETTS
T ss_pred EEEEeCCC
Confidence 56666553
No 66
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.62 E-value=2e-16 Score=127.84 Aligned_cols=78 Identities=18% Similarity=0.071 Sum_probs=70.3
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccCcCCc-----------------------------------------
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLARGIDVEQV----------------------------------------- 39 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v----------------------------------------- 39 (118)
||++.+.++.-+.+.|+.| .|+||||+++||+||+.+
T Consensus 491 nak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (922)
T 1nkt_A 491 NAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEAS 568 (922)
T ss_dssp CSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTT
T ss_pred cCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHH
Confidence 7888888887788888888 699999999999999965
Q ss_pred -----------cEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEecCCcHH
Q psy6850 40 -----------TIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLVDEHSVG 86 (118)
Q Consensus 40 -----------~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~~~~~~~ 86 (118)
.+||+|++|. +...|.||+||+||.|.+|.+++|++.+|..
T Consensus 569 ~~~~~V~~~GGlhVI~te~pe------s~riy~qr~GRTGRqGdpG~s~fflSleD~l 620 (922)
T 1nkt_A 569 KEAKEVIEAGGLYVLGTERHE------SRRIDNQLRGRSGRQGDPGESRFYLSLGDEL 620 (922)
T ss_dssp HHHHHHHHTTSEEEEECSCCS------SHHHHHHHHHTSSGGGCCEEEEEEEETTSHH
T ss_pred HhhhHHHhcCCcEEEeccCCC------CHHHHHHHhcccccCCCCeeEEEEechhHHH
Confidence 4999999999 9999999999999999999999999977653
No 67
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.59 E-value=1.9e-15 Score=117.68 Aligned_cols=65 Identities=17% Similarity=0.291 Sum_probs=59.3
Q ss_pred CCCCCHHHHHHHHHHHhcCCCc---EEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCC
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEK---VLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGK 72 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~---iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~ 72 (118)
||+++ ++|.+++++|++|+.+ |||||+++++|+|+|++++||+++.|+ ++..|+||+||+||.+.
T Consensus 478 ~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~------s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 478 TSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVN------SMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp SSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCC------CHHHHHHHHTTSCCCBG
T ss_pred eCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCC------ChHHHHHHHhhhcccCc
Confidence 67765 4799999999998876 899999999999999999999999999 99999999999999763
No 68
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.58 E-value=1.1e-14 Score=115.03 Aligned_cols=88 Identities=11% Similarity=0.135 Sum_probs=74.2
Q ss_pred CCCCCHHHHHHHHHHHhcCCCc---EEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCc--eE
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEK---VLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKC--GI 75 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~---iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~--g~ 75 (118)
||++++++|.+++++|++++.. +|++|++++.|+|++.++.||+||+|| ++..|.|++||++|.|+. ..
T Consensus 447 ~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~w------np~~~~Qa~gR~~R~Gq~~~v~ 520 (644)
T 1z3i_X 447 DGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDW------NPANDEQAMARVWRDGQKKTCY 520 (644)
T ss_dssp CSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCS------SHHHHHHHHTTSSSTTCCSCEE
T ss_pred eCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCC------CccHHHHHHHhhhhcCCCCceE
Confidence 8999999999999999998764 899999999999999999999999999 999999999999999974 45
Q ss_pred EEEEecCC--cHHHHHHHHHH
Q psy6850 76 AINLVDEH--SVGVLKDIEKH 94 (118)
Q Consensus 76 ~~~~~~~~--~~~~~~~~~~~ 94 (118)
++.|+... |...+......
T Consensus 521 v~~lv~~~tiEe~i~~~~~~K 541 (644)
T 1z3i_X 521 IYRLLSTGTIEEKILQRQAHK 541 (644)
T ss_dssp EEEEEETTSHHHHHHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHH
Confidence 66666655 33344444333
No 69
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.51 E-value=4e-14 Score=114.12 Aligned_cols=90 Identities=23% Similarity=0.330 Sum_probs=76.3
Q ss_pred CCCCCHHHHHHHHHHHhcCCCc---EEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCC--ceE
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEK---VLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGK--CGI 75 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~---iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~--~g~ 75 (118)
||+++..+|.+++++|+.+... +|++|.+++.|+|++.++.||+||+|| ++..+.|++||+.|.|+ ...
T Consensus 603 ~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~w------np~~~~Qa~gR~~RiGQ~k~V~ 676 (800)
T 3mwy_W 603 DGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDW------NPQADLQAMARAHRIGQKNHVM 676 (800)
T ss_dssp STTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCS------CSHHHHHHHTTTSCSSCCSCEE
T ss_pred eCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCC------ChhhHHHHHHHHHhcCCCceEE
Confidence 7999999999999999997654 999999999999999999999999999 99999999999999987 455
Q ss_pred EEEEecCC--cHHHHHHHHHHhC
Q psy6850 76 AINLVDEH--SVGVLKDIEKHFG 96 (118)
Q Consensus 76 ~~~~~~~~--~~~~~~~~~~~~~ 96 (118)
++.|+... +...+....+...
T Consensus 677 Vyrlv~~~TiEe~i~~~~~~K~~ 699 (800)
T 3mwy_W 677 VYRLVSKDTVEEEVLERARKKMI 699 (800)
T ss_dssp EEEEEETTSHHHHHHHHHHHHTT
T ss_pred EEEEecCCCHHHHHHHHHHHHHH
Confidence 66677655 4455555555543
No 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.26 E-value=1.5e-11 Score=101.60 Aligned_cols=81 Identities=14% Similarity=0.158 Sum_probs=66.3
Q ss_pred HHHHHHHHHhcCCCcEEEEcCccccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCC----ceEEEEEecCC
Q psy6850 8 SSSSSLNSFTSCKEKVLITTNVLARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGK----CGIAINLVDEH 83 (118)
Q Consensus 8 ~r~~~~~~F~~g~~~iLv~T~~~~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~----~g~~~~~~~~~ 83 (118)
+|..++++|++|+++|||+|+++.+|+|+|.+ .++++|.|. +...|+|++||++|.+. .|.++.|+..
T Consensus 637 ~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl------~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~- 708 (1038)
T 2w00_A 637 YYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNL------RYHGLMQAFSRTNRIYDATKTFGNIVTFRDL- 708 (1038)
T ss_dssp HHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCC------CHHHHHHHHHTTCCCCCTTCCSEEEEESSCC-
T ss_pred HHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCC------CccceeehhhccCcCCCCCCCcEEEEEcccc-
Confidence 58899999999999999999999999999999 678899998 88999999999999865 3888888752
Q ss_pred cHHHHHHHHHHhC
Q psy6850 84 SVGVLKDIEKHFG 96 (118)
Q Consensus 84 ~~~~~~~~~~~~~ 96 (118)
.......+..+.+
T Consensus 709 ~~~l~~Al~~y~~ 721 (1038)
T 2w00_A 709 ERSTIDAITLFGD 721 (1038)
T ss_dssp HHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHhC
Confidence 2333344444433
No 71
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=97.94 E-value=1e-05 Score=62.69 Aligned_cols=71 Identities=15% Similarity=0.132 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhcCCCcEEE--EcCccccccCcCC----ccEEEEecCCCCCCCCCC------------------------
Q psy6850 7 TSSSSSLNSFTSCKEKVLI--TTNVLARGIDVEQ----VTIVINFDMPIDMNGQAD------------------------ 56 (118)
Q Consensus 7 ~~r~~~~~~F~~g~~~iLv--~T~~~~~Gidi~~----v~~VI~~~~p~~~~~~~~------------------------ 56 (118)
.+|.+++++|+.+. .||+ +|+.+.+|||+|+ +++||++++|. ...+..
T Consensus 416 ~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~Vii~~lPf-~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~ 493 (540)
T 2vl7_A 416 TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESLVLAGLPY-PNVSDDMVRKRIERLSKLTGKDEDSIIHDL 493 (540)
T ss_dssp CCHHHHHHHHHTSC-CEEEEEC---------------CEEEEEEESCCC-CCTTSHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEEEEECCCC-CCCCCHHHHHHHHHHHHhhCCChhHHHHHH
Confidence 46889999999864 5666 8999999999997 89999999994 322100
Q ss_pred -cchhhhhhcccccCCC-ceEEEEE
Q psy6850 57 -CETYLHRIGRTGRFGK-CGIAINL 79 (118)
Q Consensus 57 -~~~y~qr~GR~gR~~~-~g~~~~~ 79 (118)
...+.|.+||.-|..+ .|.++.+
T Consensus 494 ~~~~~~Q~~GR~iR~~~D~g~v~ll 518 (540)
T 2vl7_A 494 TAIVIKQTIGRAFRDPNDYVKIYLC 518 (540)
T ss_dssp HHHHHHHHHHHHCCSTTCCCEEEEE
T ss_pred HHHHHHHHhCCcccCCCccEEEEEE
Confidence 1234688899998754 6665544
No 72
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=96.58 E-value=0.0031 Score=51.99 Aligned_cols=39 Identities=21% Similarity=0.111 Sum_probs=32.3
Q ss_pred EEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEecCCcH
Q psy6850 41 IVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLVDEHSV 85 (118)
Q Consensus 41 ~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~~~~~~ 85 (118)
+||-...+. |..-=.|-.||+||.|.+|.+..|++-+|.
T Consensus 662 hVIGTeRhE------SrRIDnQLRGRaGRQGDPGsSrF~LSLeDd 700 (997)
T 2ipc_A 662 FIIGTERHE------SRRIDNQLRGRAGRQGDPGGSRFYVSFDDD 700 (997)
T ss_dssp CEEESSCCS------SHHHHHHHHHTSSCSSCCCEEEEEEESSSH
T ss_pred EEEeccCCc------hHHHHHHHhcccccCCCCCCeEEEEECChH
Confidence 677777777 777788999999999999999999885553
No 73
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=96.45 E-value=0.0085 Score=47.22 Aligned_cols=74 Identities=19% Similarity=0.262 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEEcC--ccccccCcC--CccEEEEecCCCCCCCC--------------CCc--------
Q psy6850 4 GPNTSSSSSLNSFTSCKEKVLITTN--VLARGIDVE--QVTIVINFDMPIDMNGQ--------------ADC-------- 57 (118)
Q Consensus 4 l~~~~r~~~~~~F~~g~~~iLv~T~--~~~~Gidi~--~v~~VI~~~~p~~~~~~--------------~~~-------- 57 (118)
++..++.+++++|+ ++-.||++|. .+.+|||+| .++.||...+|- ...+ ++.
T Consensus 479 ~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPf-p~~~p~~~ar~~~~~~~~g~~~~~~y~~p 556 (620)
T 4a15_A 479 IDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPF-PRPDAINRSLFDYYERKYGKGWEYSVVYP 556 (620)
T ss_dssp CCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCC-CCCCHHHHHHHHHHHHHHSCHHHHHTHHH
T ss_pred CChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCC-CCCCHHHHHHHHHHHHhhCCCchHHhHHH
Confidence 45668999999999 8888999975 999999998 467899888874 2211 011
Q ss_pred --chhhhhhcccccCCC-ceEEEEE
Q psy6850 58 --ETYLHRIGRTGRFGK-CGIAINL 79 (118)
Q Consensus 58 --~~y~qr~GR~gR~~~-~g~~~~~ 79 (118)
....|.+||.=|..+ .|.++++
T Consensus 557 a~~~l~Qa~GRlIR~~~D~G~v~ll 581 (620)
T 4a15_A 557 TAIKIRQEIGRLIRSAEDTGACVIL 581 (620)
T ss_dssp HHHHHHHHHHTTCCSTTCCEEEEEE
T ss_pred HHHHHHHHhCccccCCCceEEEEEE
Confidence 112588899999765 5665555
No 74
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=89.48 E-value=0.5 Score=38.34 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=37.9
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccc-cccCcCCccEEEEe
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLA-RGIDVEQVTIVINF 45 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~-~Gidi~~v~~VI~~ 45 (118)
||+++..+|...+++++.|+.+|+|+|...- ..+.+.++.+||.-
T Consensus 452 ~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVID 497 (780)
T 1gm5_A 452 IGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVIID 497 (780)
T ss_dssp CSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEEE
T ss_pred eCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEec
Confidence 7899999999999999999999999998433 34678888888753
No 75
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=88.10 E-value=0.58 Score=36.03 Aligned_cols=41 Identities=15% Similarity=0.301 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCCCcEEEEc--CccccccCcC-----CccEEEEecCCC
Q psy6850 9 SSSSLNSFTSCKEKVLITT--NVLARGIDVE-----QVTIVINFDMPI 49 (118)
Q Consensus 9 r~~~~~~F~~g~~~iLv~T--~~~~~Gidi~-----~v~~VI~~~~p~ 49 (118)
+...++.|+...-.||++| ..+.+|||+| .++.||...+|.
T Consensus 426 ~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~viI~~lPf 473 (551)
T 3crv_A 426 VEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISDVVIVGIPY 473 (551)
T ss_dssp HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEEEEEESCCC
T ss_pred HHHHHHHHHhcCCeEEEEEecceecccccccccCCcceeEEEEEcCCC
Confidence 4567888865445899998 6999999999 478899888774
No 76
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=82.11 E-value=4.4 Score=29.59 Aligned_cols=61 Identities=13% Similarity=0.105 Sum_probs=39.4
Q ss_pred CCCcEEEEcCccccccC-----cCCccEEEEecCCCCCCCCCCcch-hhhhhcccccC----CCceEEEEEecCCcH
Q psy6850 19 CKEKVLITTNVLARGID-----VEQVTIVINFDMPIDMNGQADCET-YLHRIGRTGRF----GKCGIAINLVDEHSV 85 (118)
Q Consensus 19 g~~~iLv~T~~~~~Gid-----i~~v~~VI~~~~p~~~~~~~~~~~-y~qr~GR~gR~----~~~g~~~~~~~~~~~ 85 (118)
....+.+.|...+-|++ +...+.||-||.-| ++.. .+|.+-|+.|. ++.-.++-|++....
T Consensus 169 ~~~~i~Lltsag~~gin~~~~nl~~aD~VI~~Dsdw------Np~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~Ti 239 (328)
T 3hgt_A 169 FSCTVHLFSSEGINFTKYPIKSKARFDMLICLDTTV------DTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSI 239 (328)
T ss_dssp CSEEEEEEESSCCCTTTSCCCCCSCCSEEEECSTTC------CTTSHHHHHHHCCC---------CCEEEEEETTSH
T ss_pred CCceEEEEECCCCCCcCcccccCCCCCEEEEECCCC------CCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCH
Confidence 34455555666666675 67899999999998 7766 47877666664 245667778775443
No 77
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=74.33 E-value=3.2 Score=35.02 Aligned_cols=44 Identities=16% Similarity=0.227 Sum_probs=35.2
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcC-ccccccCcCCccEEEE
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTN-VLARGIDVEQVTIVIN 44 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~-~~~~Gidi~~v~~VI~ 44 (118)
||..+..++..+++.+..|+.+|+|+|. .+...+.+.++.+||.
T Consensus 687 ~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 687 SRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp STTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEEE
T ss_pred eCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEEE
Confidence 4667888999999999999999999996 3444477778887764
No 78
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=70.91 E-value=3.6 Score=29.89 Aligned_cols=44 Identities=9% Similarity=0.115 Sum_probs=34.3
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccc----cccCcCCccEEEE
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLA----RGIDVEQVTIVIN 44 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~----~Gidi~~v~~VI~ 44 (118)
||+.+..++...++.+..++.+|+|+|+-.- .-++..++.+||.
T Consensus 98 ~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iVi 145 (414)
T 3oiy_A 98 YSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFV 145 (414)
T ss_dssp CTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEEE
T ss_pred ECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccEEEE
Confidence 6888999999999999999999999998322 1144567777765
No 79
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=69.41 E-value=2.7 Score=21.37 Aligned_cols=18 Identities=11% Similarity=0.200 Sum_probs=16.5
Q ss_pred CCCCCHHHHHHHHHHHhc
Q psy6850 1 MGKGPNTSSSSSLNSFTS 18 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~ 18 (118)
||+|+-.+++++++-|-.
T Consensus 5 hG~MD~~~hE~Ty~gFi~ 22 (43)
T 1qle_D 5 HGEMDIRHQQATFAGFIK 22 (43)
T ss_dssp TTCSCCHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHH
Confidence 899999999999999964
No 80
>2yew_B E1 envelope glycoprotein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus}
Probab=55.29 E-value=7.1 Score=29.02 Aligned_cols=12 Identities=25% Similarity=-0.089 Sum_probs=9.0
Q ss_pred EEEEecCCCCCC
Q psy6850 41 IVINFDMPIDMN 52 (118)
Q Consensus 41 ~VI~~~~p~~~~ 52 (118)
-|.|||+|.+++
T Consensus 178 eVYNyDfP~YGa 189 (427)
T 2yew_B 178 EVYNEDYAPYGS 189 (427)
T ss_dssp CEEECCCCCTTC
T ss_pred eeeccCCCcccC
Confidence 357999998664
No 81
>3n40_F E1 envelope glycoprotein; viral protein, immature heterodimer, alphavirus, receptor BI membrane fusion; HET: NAG NDG; 2.17A {Chikungunya virus} PDB: 2xfb_A
Probab=53.19 E-value=7.5 Score=28.53 Aligned_cols=12 Identities=33% Similarity=0.155 Sum_probs=9.2
Q ss_pred EEEEecCCCCCC
Q psy6850 41 IVINFDMPIDMN 52 (118)
Q Consensus 41 ~VI~~~~p~~~~ 52 (118)
-|.|||+|.+++
T Consensus 185 eVYNyDfP~YGa 196 (393)
T 3n40_F 185 DVYNMDYPPFGA 196 (393)
T ss_dssp EEEECCCCCTTC
T ss_pred eeeccCCCcccC
Confidence 457999998665
No 82
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=51.99 E-value=8.3 Score=32.47 Aligned_cols=44 Identities=9% Similarity=0.132 Sum_probs=34.6
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCccc-c---ccCcCCccEEEE
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNVLA-R---GIDVEQVTIVIN 44 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~~~-~---Gidi~~v~~VI~ 44 (118)
||+++..+|...++.+..|..+|+|+|+-.- . -+++.++.+||.
T Consensus 155 ~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lVi 202 (1104)
T 4ddu_A 155 YSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFV 202 (1104)
T ss_dssp CTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEE
T ss_pred eCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCEEEE
Confidence 7888988899999999999999999997221 0 145568888775
No 83
>3j0c_A E1 envelope glycoprotein; alphavirus, bioweapon; 4.80A {Venezuelan equine encephalitis virus}
Probab=51.37 E-value=6.8 Score=29.23 Aligned_cols=12 Identities=25% Similarity=0.368 Sum_probs=9.1
Q ss_pred EEEEecCCCCCC
Q psy6850 41 IVINFDMPIDMN 52 (118)
Q Consensus 41 ~VI~~~~p~~~~ 52 (118)
-|.|||+|.+++
T Consensus 183 eVYNyDfP~YGa 194 (442)
T 3j0c_A 183 EIYNYDFPEYGA 194 (442)
T ss_dssp EEECCCCCCTTC
T ss_pred eeeccCCCcccC
Confidence 357899998665
No 84
>3j0f_E E1 envelope glycoprotein; alphavirus, virus assembly; 7.00A {Sindbis virus} PDB: 1ld4_M 1z8y_I
Probab=49.34 E-value=6.7 Score=29.24 Aligned_cols=11 Identities=36% Similarity=0.492 Sum_probs=8.5
Q ss_pred EEEecCCCCCC
Q psy6850 42 VINFDMPIDMN 52 (118)
Q Consensus 42 VI~~~~p~~~~ 52 (118)
|.|||+|.+++
T Consensus 184 VYNyDfP~YGa 194 (439)
T 3j0f_E 184 VYNYDFPEYGA 194 (439)
T ss_pred eeccCCCcccC
Confidence 46899998664
No 85
>3pnu_A Dihydroorotase; TIM barrel, zinc binding, hydrolase, structu genomics, center for structural genomics of infectious DISE csgid; HET: KCX; 2.40A {Campylobacter jejuni subsp}
Probab=47.86 E-value=16 Score=26.64 Aligned_cols=30 Identities=13% Similarity=0.001 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEcCcccccc
Q psy6850 5 PNTSSSSSLNSFTSCKEKVLITTNVLARGI 34 (118)
Q Consensus 5 ~~~~r~~~~~~F~~g~~~iLv~T~~~~~Gi 34 (118)
++++|+..++..++|.++++|+||=+.--.
T Consensus 238 ~~~dr~aL~~al~dG~id~~iaTDHaPh~~ 267 (359)
T 3pnu_A 238 RYEDKEALCELAFSGYEKVMFGSDSAPHPK 267 (359)
T ss_dssp CHHHHHHHHHHHHTTCTTEEECCCBCCCBC
T ss_pred CHHHHHHHHHHHhcCCCCEEEecCCCCCCH
Confidence 578999999999999999999999665443
No 86
>1i9w_A Fusion protein E1; envelope glycoprotein, membrane fusion, viral protein; 3.00A {Semliki forest virus} SCOP: b.1.18.4 f.10.1.1 PDB: 2ala_A 1rer_A
Probab=47.68 E-value=7.5 Score=28.52 Aligned_cols=11 Identities=36% Similarity=0.350 Sum_probs=8.4
Q ss_pred EEEecCCCCCC
Q psy6850 42 VINFDMPIDMN 52 (118)
Q Consensus 42 VI~~~~p~~~~ 52 (118)
|.|||+|.+++
T Consensus 184 VYNyDfP~YGa 194 (390)
T 1i9w_A 184 VFNQDFPPYGS 194 (390)
T ss_pred eeccCCCcccC
Confidence 46899998664
No 87
>1jr5_A 10 kDa anti-sigma factor; all-alpha, helix-turn-helix, coiled-coil, transcription; NMR {Enterobacteria phage T4} SCOP: a.150.1.1 PDB: 1tkv_A 1tl6_A 1tlh_A
Probab=45.72 E-value=5.5 Score=23.46 Aligned_cols=20 Identities=10% Similarity=0.155 Sum_probs=17.2
Q ss_pred CCCCHHHHHHHHHHHhcCCC
Q psy6850 2 GKGPNTSSSSSLNSFTSCKE 21 (118)
Q Consensus 2 g~l~~~~r~~~~~~F~~g~~ 21 (118)
++|++++|.+++++|..|-.
T Consensus 59 ~~lt~~ek~elieeFn~G~e 78 (90)
T 1jr5_A 59 SELTQEDKKTLIDEFNEGFE 78 (90)
T ss_dssp HTCCHHHHHHHHTTSSSSST
T ss_pred HHCCHHHHHHHHHHHhccch
Confidence 36899999999999998853
No 88
>3n44_F E1 envelope glycoprotein; viral protein, immature heterodimer, alphavirus, receptor BI membrane fusion; HET: NAG; 2.35A {Chikungunya virus} PDB: 3n41_F* 3n42_F* 3n43_F* 2xfc_A
Probab=44.91 E-value=12 Score=28.07 Aligned_cols=12 Identities=33% Similarity=0.155 Sum_probs=9.2
Q ss_pred EEEEecCCCCCC
Q psy6850 41 IVINFDMPIDMN 52 (118)
Q Consensus 41 ~VI~~~~p~~~~ 52 (118)
-|.|||+|.+.+
T Consensus 205 eVYNyDfP~YGA 216 (473)
T 3n44_F 205 DVYNMDYPPFGA 216 (473)
T ss_dssp EEEECCCCCTTC
T ss_pred eeeccCCCcccC
Confidence 457999998664
No 89
>3muu_A Structural polyprotein; beta barrels, IG-like folds, viral protein; HET: NAG BMA MAN; 3.29A {Sindbis virus} PDB: 3muw_A 3muw_U 1z8y_A 1z8y_B
Probab=43.26 E-value=13 Score=29.82 Aligned_cols=12 Identities=33% Similarity=0.528 Sum_probs=9.2
Q ss_pred EEEEecCCCCCC
Q psy6850 41 IVINFDMPIDMN 52 (118)
Q Consensus 41 ~VI~~~~p~~~~ 52 (118)
-|.|||+|.+++
T Consensus 543 eVYNyDfP~YGa 554 (750)
T 3muu_A 543 LVYNYDFPEYGA 554 (750)
T ss_dssp CEEECCCCCTTC
T ss_pred eeeccCCCcccC
Confidence 357999998664
No 90
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=42.26 E-value=22 Score=27.09 Aligned_cols=28 Identities=4% Similarity=0.038 Sum_probs=25.5
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcC
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTN 28 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~ 28 (118)
||+.+..++..++..+..|..+|+++|+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 96 NSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp CTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred eCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 5788889999999999999999999997
No 91
>2z26_A Dihydroorotase, dhoase; TIM barrel, hydrolase; HET: KCX DOR NCD; 1.29A {Escherichia coli} PDB: 2z24_A* 2z25_A* 2eg6_A* 1xge_A* 2eg7_A* 2eg8_A* 2z27_A* 2e25_A* 2z28_A* 2z29_A* 3mjm_A* 2z2a_A* 1j79_A* 2z2b_A* 3ihn_A* 3jze_A*
Probab=40.45 E-value=25 Score=25.13 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcCccc
Q psy6850 6 NTSSSSSLNSFTSCKEKVLITTNVLA 31 (118)
Q Consensus 6 ~~~r~~~~~~F~~g~~~iLv~T~~~~ 31 (118)
+++|+..++.+++|.++++|+||-+.
T Consensus 228 ~~d~~aL~~~l~~G~id~~i~SDhaP 253 (347)
T 2z26_A 228 NIHQQALRELVASGFNRVFLGTDSAP 253 (347)
T ss_dssp HHHHHHHHHHHHTTCTTEEECCCBCC
T ss_pred HHHHHHHHHHHhcCCCCeEEecCCCC
Confidence 67899999999999999999999644
No 92
>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A {Pyrobaculum aerophilum}
Probab=37.07 E-value=17 Score=27.79 Aligned_cols=74 Identities=18% Similarity=0.194 Sum_probs=40.4
Q ss_pred ccccCcCCccEEEEecCCCCCCCCCCcchhhhhhc--ccccCCCceEEEEEec-CCcHHHHHHHHHHhCCCceecC-CCC
Q psy6850 31 ARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIG--RTGRFGKCGIAINLVD-EHSVGVLKDIEKHFGKKIELLD-TED 106 (118)
Q Consensus 31 ~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~G--R~gR~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~ 106 (118)
.+|+|+|++. +++|. .+..+ .+-+- .+...|-..++++|+. .+|...++++....+..+..+. .+.
T Consensus 164 ~KgvNlPg~~----~~lp~-----lTekD-~~dl~~~~~~~~~vD~Ia~SfVr~a~Dv~~~r~~l~~~g~~~~iiaKIE~ 233 (461)
T 3qtg_A 164 GKAIVVEGKD----YDIST-----PAEED-VEALKAISPIRDNIDYVAISLAKSCKDVDSVRSLLTELGFQSQVAVKIET 233 (461)
T ss_dssp TCBEEETTCC----CCCCS-----SCHHH-HHHHHHHGGGGGGCCEEEECSCCSHHHHHHHHHHHHHTTCCCEEEEEECS
T ss_pred CCceecCCCC----CCCCC-----CCHHH-HHHHHHHHHhhcCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEEEEECC
Confidence 3578888864 46663 02221 12222 2334555788888886 4566777776666665544443 355
Q ss_pred hhhhhhcc
Q psy6850 107 IDDEGNFR 114 (118)
Q Consensus 107 ~~~~~~~~ 114 (118)
.+.++++.
T Consensus 234 ~eav~nld 241 (461)
T 3qtg_A 234 KGAVNNLE 241 (461)
T ss_dssp HHHHHTHH
T ss_pred HHHHHhHH
Confidence 55554443
No 93
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=34.04 E-value=58 Score=21.50 Aligned_cols=40 Identities=18% Similarity=0.274 Sum_probs=23.2
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcC-----cccc-ccCcCCccEEEE
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTN-----VLAR-GIDVEQVTIVIN 44 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~-----~~~~-Gidi~~v~~VI~ 44 (118)
+|+.+..++...+.+ ..+|+|+|+ .+.. .+++.++.+||.
T Consensus 137 ~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lVi 182 (242)
T 3fe2_A 137 YGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRTTYLVL 182 (242)
T ss_dssp CTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTTCCEEEE
T ss_pred ECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcccccEEEE
Confidence 345555444433322 478999996 2222 356778887765
No 94
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=31.89 E-value=78 Score=20.30 Aligned_cols=41 Identities=7% Similarity=0.140 Sum_probs=23.7
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCc-----c-ccccCcCCccEEEE
Q psy6850 1 MGKGPNTSSSSSLNSFTSCKEKVLITTNV-----L-ARGIDVEQVTIVIN 44 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g~~~iLv~T~~-----~-~~Gidi~~v~~VI~ 44 (118)
||+.+..++. +.+..+..+|+|+|.- + ...+++.++++||.
T Consensus 118 ~g~~~~~~~~---~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 164 (220)
T 1t6n_A 118 FGGLSIKKDE---EVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 164 (220)
T ss_dssp SCCSCHHHHH---HHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred eCCCChHHHH---HHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEE
Confidence 3455444433 3445567789999972 1 22356677777765
No 95
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=30.07 E-value=46 Score=25.81 Aligned_cols=28 Identities=7% Similarity=0.030 Sum_probs=24.6
Q ss_pred CCCCCHHHHHHHHHHH--hcCCCcEEEEcC
Q psy6850 1 MGKGPNTSSSSSLNSF--TSCKEKVLITTN 28 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F--~~g~~~iLv~T~ 28 (118)
||+++..++..++..+ ..+..+|+++|+
T Consensus 115 ~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 115 NASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp CSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred eCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 5788899999998888 578999999998
No 96
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, binding, glycolysis, magnesium, metal-binding, NUCL binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A* 3qv6_A* 3qv7_D* 3qv8_D* 3srk_A* 3e0w_A 3e0v_A 3pp7_A* 3qv9_A*
Probab=23.85 E-value=16 Score=28.14 Aligned_cols=74 Identities=16% Similarity=0.186 Sum_probs=36.6
Q ss_pred ccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEec-CCcHHHHHHHHHHhCCCceecC-CCChh
Q psy6850 31 ARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLVD-EHSVGVLKDIEKHFGKKIELLD-TEDID 108 (118)
Q Consensus 31 ~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 108 (118)
.+|+|+|++. +++|. -.+.-.+-+-.+-..+-..++++|+. .++...++++....+..+..+. .+..+
T Consensus 175 ~KgvNlPg~~----~~lp~------ltekD~~dl~~~~~~~vD~i~~sfVr~a~dv~~~r~~l~~~~~~i~IiaKIE~~e 244 (499)
T 3hqn_D 175 RRGVNLPGCD----VDLPA------VSAKDRVDLQFGVEQGVDMIFASFIRSAEQVGDVRKALGPKGRDIMIICKIENHQ 244 (499)
T ss_dssp TCBEECTTSC----CCCCS------SCHHHHHHHHHHHHTTCSEEEETTCCSHHHHHHHHHHHCGGGTTSEEEEEECSHH
T ss_pred CCceecCCCC----CCCCC------CCHHHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 3578888865 46664 11111222222224455678888876 4455555555444343333332 34444
Q ss_pred hhhhcc
Q psy6850 109 DEGNFR 114 (118)
Q Consensus 109 ~~~~~~ 114 (118)
.++++.
T Consensus 245 av~nld 250 (499)
T 3hqn_D 245 GVQNID 250 (499)
T ss_dssp HHHTHH
T ss_pred HHHhHH
Confidence 444443
No 97
>2l2l_A Transcriptional repressor P66-alpha; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=23.32 E-value=58 Score=16.16 Aligned_cols=14 Identities=0% Similarity=0.100 Sum_probs=10.4
Q ss_pred CHHHHHHHHHHHhc
Q psy6850 5 PNTSSSSSLNSFTS 18 (118)
Q Consensus 5 ~~~~r~~~~~~F~~ 18 (118)
|+++|.+.+++.+.
T Consensus 2 s~~ere~~i~~Lre 15 (43)
T 2l2l_A 2 SPEERERMIKQLKE 15 (43)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 67788888877764
No 98
>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric enzyme, alternative splicing, glycolysis, magnesium, metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo sapiens} PDB: 3gqy_A* 3h6o_A* 3me3_A* 3srh_A 3srd_A 1zjh_A 4b2d_A* 4b2d_D* 3u2z_A* 3g2g_A 1t5a_A* 3bjt_A 4g1n_A* 3bjf_A* 3srf_C 1f3x_A 3n25_A 1f3w_A 1a49_A* 1a5u_A* ...
Probab=23.20 E-value=19 Score=28.11 Aligned_cols=74 Identities=12% Similarity=0.223 Sum_probs=36.7
Q ss_pred ccccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEec-CCcHHHHHHHHHHhCCCceecC-CCChh
Q psy6850 31 ARGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLVD-EHSVGVLKDIEKHFGKKIELLD-TEDID 108 (118)
Q Consensus 31 ~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 108 (118)
.+|+|+|++. +++|. . +..+. +-+-.+-..+-..++++|+. .++...++++....+..+..+. .+..+
T Consensus 225 ~KgvNlPg~~----l~lpa--l---TekD~-~dl~f~~~~~vD~ia~SfVr~a~Dv~~~r~~L~~~g~~i~IIAKIE~~e 294 (550)
T 3gr4_A 225 KKGVNLPGAA----VDLPA--V---SEKDI-QDLKFGVEQDVDMVFASFIRKASDVHEVRKVLGEKGKNIKIISKIENHE 294 (550)
T ss_dssp SCBEECTTSC----CCCCS--S---CHHHH-HHHHHHHHTTCSEEEETTCCSHHHHHHHHHHHTTTTTTSEEEEEECSHH
T ss_pred CceeecCCCc----cCCCC--C---CHHHH-HHHHHHHHcCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEEEEeCCHH
Confidence 3578888864 46663 1 21211 11112223455678888876 4455555555544444444333 34444
Q ss_pred hhhhcc
Q psy6850 109 DEGNFR 114 (118)
Q Consensus 109 ~~~~~~ 114 (118)
.++++.
T Consensus 295 av~nld 300 (550)
T 3gr4_A 295 GVRRFD 300 (550)
T ss_dssp HHHTHH
T ss_pred HHHHHH
Confidence 444443
No 99
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A
Probab=22.91 E-value=20 Score=27.65 Aligned_cols=72 Identities=15% Similarity=0.283 Sum_probs=36.1
Q ss_pred cccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEec-CCcHHHHHHHHHHhCCCceecC-CCChhh
Q psy6850 32 RGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLVD-EHSVGVLKDIEKHFGKKIELLD-TEDIDD 109 (118)
Q Consensus 32 ~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 109 (118)
+|+|+|++. +++|. -...-..-+-++-..|-.++++.|+. .++...+.++....+..+..+. .+..+.
T Consensus 177 KgvNlPg~~----~~lp~------lt~~D~~DI~~~l~~g~d~I~lpfV~saeDv~~~~~~l~~~~~~i~IiakIEt~ea 246 (500)
T 1a3w_A 177 KGVNLPGTD----VDLPA------LSEKDKEDLRFGVKNGVHMVFASFIRTANDVLTIREVLGEQGKDVKIIVKIENQQG 246 (500)
T ss_dssp CBEECTTCC----CCCCS------SCHHHHHHHHHHHHHTCSEEEECSCCSHHHHHHHHHHHHHHHTTSEEEEEECSSHH
T ss_pred CCCcCCCCc----cCCCC------CChhHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHhcCCCcEEEEEECChHH
Confidence 478888864 45664 11111122223334456788888886 4455555555444443333332 344444
Q ss_pred hhhc
Q psy6850 110 EGNF 113 (118)
Q Consensus 110 ~~~~ 113 (118)
++++
T Consensus 247 v~nl 250 (500)
T 1a3w_A 247 VNNF 250 (500)
T ss_dssp HHSH
T ss_pred HHhH
Confidence 4443
No 100
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1pky_A 1e0u_A
Probab=22.43 E-value=16 Score=27.98 Aligned_cols=73 Identities=18% Similarity=0.273 Sum_probs=37.3
Q ss_pred cccCcCCccEEEEecCCCCCCCCCCcchhhhhhcccccCCCceEEEEEec-CCcHHHHHHHHHHh-CCCceecC-CCChh
Q psy6850 32 RGIDVEQVTIVINFDMPIDMNGQADCETYLHRIGRTGRFGKCGIAINLVD-EHSVGVLKDIEKHF-GKKIELLD-TEDID 108 (118)
Q Consensus 32 ~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~GR~gR~~~~g~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~-~~~~~ 108 (118)
+|+|+|++. +++|. -.+.-..-+-++-..|-.++++.|+. .++...++++.+.. +..+..+. .+..+
T Consensus 156 KgvNlPg~~----~~lp~------ltekD~~Di~~~l~~gvD~I~lsfV~saeDv~~~~~~l~~~~~~~i~IiakIEt~e 225 (470)
T 1e0t_A 156 KGVNLPGVS----IALPA------LAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQE 225 (470)
T ss_dssp CEEECSSCC----CCCCS------SCHHHHHHHHHHHHHTCSEEEESSCCSHHHHHHHHHHHHTTTCTTCEEEEEECSHH
T ss_pred ceeecCCCc----CCCCC------CCcCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHHhcCCCceEEEEECCHH
Confidence 478888764 46664 22222222233334456788888885 44555555555444 44444333 34444
Q ss_pred hhhhcc
Q psy6850 109 DEGNFR 114 (118)
Q Consensus 109 ~~~~~~ 114 (118)
.++++.
T Consensus 226 av~nld 231 (470)
T 1e0t_A 226 GLNNFD 231 (470)
T ss_dssp HHHTHH
T ss_pred HHHhHH
Confidence 444433
No 101
>1cmk_I CAMP-dependent protein kinase inhibitor, alpha form; phosphotransferase; HET: TPO SEP MYR; 2.90A {Homo sapiens}
Probab=22.37 E-value=22 Score=15.89 Aligned_cols=8 Identities=63% Similarity=0.812 Sum_probs=5.7
Q ss_pred hhcccccC
Q psy6850 63 RIGRTGRF 70 (118)
Q Consensus 63 r~GR~gR~ 70 (118)
..||+||.
T Consensus 8 ~~~RtGRR 15 (26)
T 1cmk_I 8 ASGRTGRR 15 (26)
T ss_pred hcCccccc
Confidence 45888875
No 102
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=21.01 E-value=72 Score=18.12 Aligned_cols=36 Identities=8% Similarity=0.085 Sum_probs=28.3
Q ss_pred CCCCCHHHHHHHHHHHhcC--CCcEEEEcCccccccCc
Q psy6850 1 MGKGPNTSSSSSLNSFTSC--KEKVLITTNVLARGIDV 36 (118)
Q Consensus 1 Hg~l~~~~r~~~~~~F~~g--~~~iLv~T~~~~~Gidi 36 (118)
|-=|+++|..+.+++++-. ++.-+..||.+++-+..
T Consensus 12 H~iLs~eEk~~lL~~y~i~~~qLPrI~~~DPvar~~G~ 49 (78)
T 1hmj_A 12 HEIVPKEEVEEILKRYNIKIQQLPKIYEDDPVIQEIGA 49 (78)
T ss_pred eEECCHHHHHHHHHHcCCCHHHCCeeeCcCHhhHHhCC
Confidence 4458999999999999865 56678888888876555
No 103
>3khd_A Pyruvate kinase; malaria, structural genomics, structural GE consortium, SGC, transferase; 2.70A {Plasmodium falciparum 3D7}
Probab=20.69 E-value=18 Score=28.02 Aligned_cols=74 Identities=19% Similarity=0.344 Sum_probs=36.3
Q ss_pred ccccCcCCccEEEEecCCCCCCCCCCcchhhhhh-cccccCCCceEEEEEec-CCcHHHHHHHHHHhCCCceecC-CCCh
Q psy6850 31 ARGIDVEQVTIVINFDMPIDMNGQADCETYLHRI-GRTGRFGKCGIAINLVD-EHSVGVLKDIEKHFGKKIELLD-TEDI 107 (118)
Q Consensus 31 ~~Gidi~~v~~VI~~~~p~~~~~~~~~~~y~qr~-GR~gR~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~ 107 (118)
.+|+|+|++. +++|. .+..+. +-+ -.+-..+-..++++|+. .+|...++++....+..+..+. .+..
T Consensus 199 ~KgvNlPg~~----~~lp~-----lTekD~-~dl~~f~~~~~vD~Ia~SFVr~a~Dv~~~r~~l~~~g~~i~IIAKIE~~ 268 (520)
T 3khd_A 199 RKNMNLPNVK----VDLPI-----ISEKDK-NDILNFAIPMGCNFIAASFIQSADDVRLIRNLLGPRGRHIKIIPKIENI 268 (520)
T ss_dssp SCEEECTTSC----CCSCS-----SCHHHH-HHHHHTHHHHTCCEEEETTCCSHHHHHHHHHHHTTTTTTSEEEEEECSH
T ss_pred CceeecCCCc----CCCCC-----CCHHHH-HHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHhcCCCCcEEEEECCH
Confidence 3478888765 45664 122221 111 12223445677888876 4455555555544444443332 3444
Q ss_pred hhhhhcc
Q psy6850 108 DDEGNFR 114 (118)
Q Consensus 108 ~~~~~~~ 114 (118)
+.+++++
T Consensus 269 eav~nld 275 (520)
T 3khd_A 269 EGIIHFD 275 (520)
T ss_dssp HHHHTHH
T ss_pred HHHHhHH
Confidence 4444443
Done!