BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6851
(948 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TQO|A Chain A, Structure Of The Cysteinyl-Trna Synthetase (Cyss) From
Coxiella Burnetii
Length = 462
Score = 121 bits (304), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 58/73 (79%)
Query: 785 ASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLK 844
+ KR P DF LWKK+K GEP W SPWGEGRPGWHIECS +S++LG DIH GG+DLK
Sbjct: 175 SDSKRDPLDFVLWKKAKPGEPKWDSPWGEGRPGWHIECSAXSSSILGQPFDIHGGGLDLK 234
Query: 845 FPHHDNELAQAEG 857
FPHH+NE+AQ+E
Sbjct: 235 FPHHENEIAQSEA 247
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQN 474
G+S+I FD + R L Y +T+ NITDIDDKIIKRA +N
Sbjct: 44 GRSWIIFDXVVRYLRXR-GYEVTFVRNITDIDDKIIKRAGEN 84
Score = 36.6 bits (83), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 118 VLPPTVLTRVSEYIPEIVASYIEKIIANGLAYES-NGSVYFNVNAF 162
VL P R ++Y+PEI+ I+K++ N AY NG V+F+V F
Sbjct: 108 VLSPDQEPRATQYVPEII-KLIQKLLDNQYAYTGQNGDVFFDVRRF 152
>pdb|1LI5|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase
pdb|1LI5|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase
pdb|1LI7|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase With
Cysteine Substrate Bound
pdb|1LI7|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase With
Cysteine Substrate Bound
pdb|1U0B|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase Binary
Complex With Trnacys
Length = 461
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 46/69 (66%), Positives = 51/69 (73%)
Query: 787 EKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFP 846
+KR+P DF LWK SK GEP W SPWG GRPGWHIECS M LG DIH GG DL FP
Sbjct: 174 DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233
Query: 847 HHDNELAQA 855
HH+NE+AQ+
Sbjct: 234 HHENEIAQS 242
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQN 474
G++++ FD++ R L + Y + Y NITDIDDKIIKRA +N
Sbjct: 41 GRTFVAFDVVARYL-RFLGYKLKYVRNITDIDDKIIKRANEN 81
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 105 KMETDKYSQFDE-TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAY-ESNGSVYFNV 159
+M + + FD +L P + R + +I EI+ E++IA G AY NG V F+V
Sbjct: 91 RMIAEMHKDFDALNILRPDMEPRATHHIAEII-ELTEQLIAKGHAYVADNGDVMFDV 146
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 624 FATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIV 661
F + AE HKD LN+L P + R + +I EI+
Sbjct: 85 FVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEII 122
>pdb|3C8Z|A Chain A, The 1.6 A Crystal Structure Of Mshc: The Rate Limiting
Enzyme In The Mycothiol Biosynthetic Pathway
pdb|3C8Z|B Chain B, The 1.6 A Crystal Structure Of Mshc: The Rate Limiting
Enzyme In The Mycothiol Biosynthetic Pathway
Length = 414
Score = 82.8 bits (203), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 43/66 (65%)
Query: 793 DFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNEL 852
D LW+ + GEP W SP+G GRPGWH+ECS +A +G LDI GG DL FPHH+
Sbjct: 204 DALLWRAERPGEPSWPSPFGRGRPGWHVECSAIALTRIGTGLDIQGGGSDLIFPHHEYSA 263
Query: 853 AQAEGL 858
A AE +
Sbjct: 264 AHAESV 269
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 435 SYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQ 487
+Y+TFD++ R+ + + + Y N+TD+DD + +RA ++ + + + + E Q
Sbjct: 60 TYLTFDLVHRLWLD-AGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQ 111
>pdb|3SP1|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase (Cyss) From
Borrelia Burgdorferi
pdb|3SP1|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase (Cyss) From
Borrelia Burgdorferi
Length = 501
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 788 KRSPNDFALW---KKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLK 844
KR+ DF LW K K E W SPWG G P WH+EC+ M LDIH GGVD
Sbjct: 205 KRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKDALDIHLGGVDHI 264
Query: 845 FPHHDNELAQAE 856
HH NE+A AE
Sbjct: 265 GVHHINEIAIAE 276
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 11/53 (20%)
Query: 434 KSYITFDILRRILSEYFNYNITYAMNITDI----------DDKIIKRARQNYL 476
++YI D+L + L + Y + YAMNITDI +DK+ K AR+ L
Sbjct: 62 RTYIFGDLLIKTL-RFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGL 113
>pdb|1N27|A Chain A, Solution Structure Of The Pwwp Domain Of Mouse Hepatoma-
Derived Growth Factor, Related Protein 3
Length = 96
Score = 63.5 bits (153), Expect = 5e-10, Method: Composition-based stats.
Identities = 29/58 (50%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 187 GEVRGYPPWPARIEGLADET--PNRLKYHIFFYGTRETGICRQDELFPYTEFKDKYGK 242
+++GYP WPARI+ L + P KY IFF+GT ET +LFPY E+KDK+GK
Sbjct: 17 AKMKGYPHWPARIDELPEGAVKPPANKYPIFFFGTHETAFLGPKDLFPYKEYKDKFGK 74
>pdb|3QBY|A Chain A, Crystal Structure Of The Pwwp Domain Of Human
Hepatoma-Derived Growth Factor 2
pdb|3QBY|B Chain B, Crystal Structure Of The Pwwp Domain Of Human
Hepatoma-Derived Growth Factor 2
pdb|3QBY|C Chain C, Crystal Structure Of The Pwwp Domain Of Human
Hepatoma-Derived Growth Factor 2
pdb|3QJ6|A Chain A, The Crystal Structure Of Pwwp Domain Of Human
Hepatoma-Derived Growth Factor 2 In Complex With
H3k79me3 Peptide
Length = 94
Score = 63.2 bits (152), Expect = 6e-10, Method: Composition-based stats.
Identities = 30/58 (51%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 187 GEVRGYPPWPARIEGLADET--PNRLKYHIFFYGTRETGICRQDELFPYTEFKDKYGK 242
+++GYP WPARI+ +AD P KY IFF+GT ET +LFPY + KDKYGK
Sbjct: 14 AKMKGYPHWPARIDDIADGAVKPPPNKYPIFFFGTHETAFLGPKDLFPYDKCKDKYGK 71
>pdb|3EAE|A Chain A, Pwwp Domain Of Human Hepatoma-Derived Growth Factor 2
(Hdgf2)
pdb|3EAE|B Chain B, Pwwp Domain Of Human Hepatoma-Derived Growth Factor 2
(Hdgf2)
Length = 93
Score = 63.2 bits (152), Expect = 7e-10, Method: Composition-based stats.
Identities = 30/58 (51%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 187 GEVRGYPPWPARIEGLADET--PNRLKYHIFFYGTRETGICRQDELFPYTEFKDKYGK 242
+++GYP WPARI+ +AD P KY IFF+GT ET +LFPY + KDKYGK
Sbjct: 13 AKMKGYPHWPARIDDIADGAVKPPPNKYPIFFFGTHETAFLGPKDLFPYDKCKDKYGK 70
>pdb|2B8A|A Chain A, High Resolution Structure Of The Hdgf Pwwp Domain
Length = 110
Score = 57.8 bits (138), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 6/60 (10%)
Query: 187 GEVRGYPPWPARI----EGLADETPNRLKYHIFFYGTRETGICRQDELFPYTEFKDKYGK 242
+++GYP WPARI E T N KY +FF+GT ET +LFPY E K+K+GK
Sbjct: 18 AKMKGYPHWPARIDEMPEAAVKSTAN--KYQVFFFGTHETAFLGPKDLFPYEESKEKFGK 75
>pdb|2NLU|A Chain A, Domain-Swapped Dimer Of The Pwwp Module Of Human Hepatoma-
Derived Growth Factor
pdb|2NLU|B Chain B, Domain-Swapped Dimer Of The Pwwp Module Of Human Hepatoma-
Derived Growth Factor
Length = 100
Score = 57.8 bits (138), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 6/60 (10%)
Query: 187 GEVRGYPPWPARI----EGLADETPNRLKYHIFFYGTRETGICRQDELFPYTEFKDKYGK 242
+++GYP WPARI E T N KY +FF+GT ET +LFPY E K+K+GK
Sbjct: 18 AKMKGYPHWPARIDEMPEAAVKSTAN--KYQVFFFGTHETAFLGPKDLFPYEESKEKFGK 75
>pdb|1RI0|A Chain A, Nmr Structure Of The N-Terminal Hath Domain Of Human Hdgf
Length = 110
Score = 57.8 bits (138), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 6/60 (10%)
Query: 187 GEVRGYPPWPARI----EGLADETPNRLKYHIFFYGTRETGICRQDELFPYTEFKDKYGK 242
+++GYP WPARI E T N KY +FF+GT ET +LFPY E K+K+GK
Sbjct: 28 AKMKGYPHWPARIDEMPEAAVKSTAN--KYQVFFFGTHETAFLGPKDLFPYEESKEKFGK 85
>pdb|2M16|A Chain A, P75/ledgf Pwwp Domain
Length = 97
Score = 56.6 bits (135), Expect = 6e-08, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 187 GEVRGYPPWPARIEGLADET--PNRLKYHIFFYGTRETGICRQDELFPYTEFKDKYGK 242
+++GYP WPAR++ + D P K IFF+GT ET ++FPY+E K+KYGK
Sbjct: 17 AKMKGYPHWPARVDEVPDGAVKPPTNKLPIFFFGTHETAFLGPKDIFPYSENKEKYGK 74
>pdb|4FU6|A Chain A, Crystal Structure Of The Psip1 Pwwp Domain
Length = 153
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 188 EVRGYPPWPARIEGLADET--PNRLKYHIFFYGTRETGICRQDELFPYTEFKDKYGK 242
+++GYP WPAR++ + D P K IFF+GT ET ++FPY+E K+KYGK
Sbjct: 32 KMKGYPHWPARVDEVPDGAVKPPTNKLPIFFFGTHETAFLGPKDIFPYSENKEKYGK 88
>pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 113 QFDETVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPNHYYAK 172
+ +E + P V++Y+ EI A ++ A +++ G YFNV PN YA
Sbjct: 163 KVEENIGNPLSPYAVTKYVNEIYA----QVYARTYGFKTIGLRYFNVFGRRQDPNGAYAA 218
Query: 173 LVPE 176
++P+
Sbjct: 219 VIPK 222
>pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|B Chain B, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|C Chain C, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|D Chain D, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
Length = 364
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 113 QFDETVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPNHYYAK 172
+ +E + P V++Y+ EI A ++ A +++ G YFNV PN YA
Sbjct: 176 KVEENIGNPLSPYAVTKYVNEIYA----QVYARTYGFKTIGLRYFNVFGRRQDPNGAYAA 231
Query: 173 LVPE 176
++P+
Sbjct: 232 VIPK 235
>pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUD|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
Length = 351
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 113 QFDETVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPNHYYAK 172
+ +E + P V++Y+ EI A ++ A +++ G YFNV PN YA
Sbjct: 163 KVEENIGNPLSPYAVTKYVNEIYA----QVYARTYGFKTIGLRYFNVFGRRQDPNGAYAA 218
Query: 173 LVPE 176
++P+
Sbjct: 219 VIPK 222
>pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 113 QFDETVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPNHYYAK 172
+ +E + P V++Y+ EI A ++ A +++ G YFNV PN YA
Sbjct: 157 KVEENIGNPLSPYAVTKYVNEIYA----QVYARTYGFKTIGLRYFNVFGRRQDPNGAYAA 212
Query: 173 LVPE 176
++P+
Sbjct: 213 VIPK 216
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,374,967
Number of Sequences: 62578
Number of extensions: 881139
Number of successful extensions: 2433
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2401
Number of HSP's gapped (non-prelim): 29
length of query: 948
length of database: 14,973,337
effective HSP length: 108
effective length of query: 840
effective length of database: 8,214,913
effective search space: 6900526920
effective search space used: 6900526920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)