BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6851
(948 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ER72|SYCC_MOUSE Cysteine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Cars PE=1
SV=2
Length = 831
Score = 217 bits (553), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 151/432 (34%), Positives = 203/432 (46%), Gaps = 113/432 (26%)
Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQTSKIL 492
+SYI+FDILRR+L +YF Y++ Y MNITDIDDKII+RARQNYLFE++ +E + +++L
Sbjct: 151 ARSYISFDILRRVLRDYFQYDVFYCMNITDIDDKIIRRARQNYLFEQY-REQKPPATQLL 209
Query: 493 KDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQPEGTINNIK-NVTFQKL 551
KD+ + M F K+ TDPDK M++ I ++V+ A + + +++ + + Q L
Sbjct: 210 KDVRDAMKPFSVKLSETTDPDKRQMLERIQNSVKLATEPLEQAVRSSLSGEEVDSKVQVL 269
Query: 552 LTAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLD 611
L +D SDWLDS GS +TDNSIF+ LPK WE EFHKDM LN
Sbjct: 270 LEEAKDLLSDWLDSTGGSEVTDNSIFSKLPKFWEEEFHKDMEALN--------------- 314
Query: 612 SLHGSSITDNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAA 671
VLPP VLTRVSEY+PEIV Q
Sbjct: 315 --------------------------------VLPPDVLTRVSEYVPEIVNFVQKIVDNG 342
Query: 672 AKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTP 731
A + S A+ AA++K +
Sbjct: 343 YGYASNGS------------------VYFDTAKFAASEK------------------HSY 366
Query: 732 AKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAK-PVAQAAKPGDLSSQEASEKRS 790
K V +A K + D S S D ++P + +A+KPG+
Sbjct: 367 GKLVPEAV--GDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGE----------- 413
Query: 791 PNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDN 850
P+ W K G P W HIECS MA +LG +DIH GG DL+FPHHDN
Sbjct: 414 PSWPCPWGK---GRPGW-----------HIECSAMAGTLLGASMDIHGGGFDLRFPHHDN 459
Query: 851 ELAQAEGLPTHD 862
ELAQ+E +D
Sbjct: 460 ELAQSEAYFEND 471
Score = 167 bits (422), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 84/189 (44%), Positives = 116/189 (61%), Gaps = 10/189 (5%)
Query: 251 QQSLKLVVIMKEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALC 310
+ +L+ M EFFLNVKD +R P FEKW ++EL+ F K VH ALC
Sbjct: 533 ESALQYEKFMNEFFLNVKDILRA---PVDITGQFEKWEAEEVELNKNFYGKKTAVHEALC 589
Query: 311 DNMDTRSALDSIRDCISQVNIYL------RGTPNQLLLRDIGAYVTKILTVFGCIGDVKN 364
DN+DTR+ ++ +R +SQ N+Y+ R PN+ LL +I Y+T +L +FG I +
Sbjct: 590 DNIDTRTVMEEMRALVSQCNLYMAARKAERRRPNRALLENIAMYLTHMLKIFGAIEEESP 649
Query: 365 IGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLRDEVLPNV 424
+GFP+GG G + NLE V+PYL +LSEFR+ +R AR K E+L D LRD++LP +
Sbjct: 650 LGFPVGGPGT-NLNLESTVMPYLQVLSEFREGVRKIAREKKVLEVLQLSDALRDDILPEL 708
Query: 425 GVRLEDIEG 433
GVR ED EG
Sbjct: 709 GVRFEDHEG 717
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 53/72 (73%), Gaps = 1/72 (1%)
Query: 117 TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPNHYYAKLVPE 176
VLPP VLTRVSEY+PEIV ++++KI+ NG Y SNGSVYF+ F + H Y KLVPE
Sbjct: 314 NVLPPDVLTRVSEYVPEIV-NFVQKIVDNGYGYASNGSVYFDTAKFAASEKHSYGKLVPE 372
Query: 177 AYGDTKTLQEGE 188
A GD K LQEGE
Sbjct: 373 AVGDQKALQEGE 384
Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 59/96 (61%), Gaps = 6/96 (6%)
Query: 31 RLNPALKLPFLPLPSI------GRPSAVKLVDKETLAKEKEAKRLAEAEKAAEKERKKAE 84
+L+ AL+ LP + G P+ VKLVD++TL KEKE K+ AE EK +KE +
Sbjct: 695 QLSDALRDDILPELGVRFEDHEGLPTVVKLVDRDTLLKEKEGKKRAEEEKRRKKEEAARK 754
Query: 85 LAAAQEAKEAQKKIPPSEMFKMETDKYSQFDETVLP 120
+ AK A+ KIPPSEMF E +KYS+FDE LP
Sbjct: 755 KQEQEAAKLAKMKIPPSEMFLSEVNKYSKFDENGLP 790
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 32/44 (72%)
Query: 857 GLPTHDQEGKELSKGLAKKLKKLQLTQEKKYNEYIASVQKATLH 900
GLPTHD EGKELSKG AKKLKKL QEK Y EY+ +Q +L
Sbjct: 788 GLPTHDTEGKELSKGQAKKLKKLFEAQEKLYKEYLQMLQNGSLQ 831
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/39 (71%), Positives = 30/39 (76%)
Query: 910 GLPTHDQEGKELSKGLAKKLKKLQLTQEKKYNEYIASVQ 948
GLPTHD EGKELSKG AKKLKKL QEK Y EY+ +Q
Sbjct: 788 GLPTHDTEGKELSKGQAKKLKKLFEAQEKLYKEYLQMLQ 826
>sp|Q7ZWR2|SYCC_XENLA Cysteine--tRNA ligase, cytoplasmic OS=Xenopus laevis GN=cars PE=2
SV=1
Length = 747
Score = 217 bits (552), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 151/434 (34%), Positives = 202/434 (46%), Gaps = 115/434 (26%)
Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQTSKIL 492
+SYI+FDILRR+L +YF Y++ Y MNITDIDDKIIKRARQ +LF+++ + N S +L
Sbjct: 67 ARSYISFDILRRVLRDYFKYDVFYCMNITDIDDKIIKRARQRHLFQQYRESNPPH-SDLL 125
Query: 493 KDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEA---KQDISAQPEGTINNIKNVTFQ 549
+D+ + F ++ DPDK M++ I + V A QD + G K+ Q
Sbjct: 126 QDVNTALIPFLQRISETNDPDKKQMLERIQTAVSAALLPLQDALNKNTGAEELQKHS--Q 183
Query: 550 KLLTAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDW 609
L+ A D SDWLD HG+ I DNSIF+ LPK+WE E+HKDM LN
Sbjct: 184 VLMEAAVDLLSDWLDEKHGAQIADNSIFSQLPKYWEGEYHKDMEALN------------- 230
Query: 610 LDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKP 669
VL P VLTRVSEY+PEIVA Q
Sbjct: 231 ----------------------------------VLTPDVLTRVSEYVPEIVAFVQKIVD 256
Query: 670 AAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVK 729
+ S S+++ AK V E +KA + D S
Sbjct: 257 NGYGYVSNGSVYFSTAKFHDSENHFYAKLV---PEAVGDQKALQEGEGDLS--------- 304
Query: 730 TPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKR 789
+A + +E S +D + + +A+KPG+ S
Sbjct: 305 -----------ISADRLSEKQSPNDFA--------------LWKASKPGEPS-------- 331
Query: 790 SPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHD 849
W+ PW G+GRPGWHIECS MA ++LG +DIH GG DL+FPHHD
Sbjct: 332 -------WES-----PW-----GKGRPGWHIECSAMAGSILGESMDIHGGGFDLRFPHHD 374
Query: 850 NELAQAEGLPTHDQ 863
NELAQ+E +D
Sbjct: 375 NELAQSEAYFDNDH 388
Score = 166 bits (420), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 84/181 (46%), Positives = 114/181 (62%), Gaps = 10/181 (5%)
Query: 259 IMKEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSA 318
M EFFLNVKD +R P F KW ++EL+ F K +H ALCDN+DTR+
Sbjct: 457 FMNEFFLNVKDLLRA---PTDITGQFVKWEVLEIELNNCFYSKKAAIHEALCDNIDTRTV 513
Query: 319 LDSIRDCISQVNIYL------RGTPNQLLLRDIGAYVTKILTVFGCIGDVKNIGFPLGGT 372
++ +R +SQ N Y+ + PN++LLR I +Y+T +L VFG I + IGFP+GG+
Sbjct: 514 MEEMRSLVSQCNSYIASKKVAKQFPNRMLLRSISSYLTSMLKVFGAIEGEEVIGFPIGGS 573
Query: 373 GVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLRDEVLPNVGVRLEDIE 432
S NLE V+PYL +LS+FR+ +R AR K TE+L D LRD++LP +GVRLED E
Sbjct: 574 E-NSMNLESTVMPYLQVLSQFREGVRQIARQHKVTEVLQLSDLLRDDILPELGVRLEDHE 632
Query: 433 G 433
G
Sbjct: 633 G 633
Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/71 (66%), Positives = 54/71 (76%), Gaps = 1/71 (1%)
Query: 118 VLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPNHYYAKLVPEA 177
VL P VLTRVSEY+PEIVA +++KI+ NG Y SNGSVYF+ F NH+YAKLVPEA
Sbjct: 231 VLTPDVLTRVSEYVPEIVA-FVQKIVDNGYGYVSNGSVYFSTAKFHDSENHFYAKLVPEA 289
Query: 178 YGDTKTLQEGE 188
GD K LQEGE
Sbjct: 290 VGDQKALQEGE 300
Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 50/74 (67%)
Query: 47 GRPSAVKLVDKETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKKIPPSEMFKM 106
G P+ VKLVD+ETL KEKE KR AE EK +KE + + AK + KI PS+MF +
Sbjct: 633 GLPTVVKLVDRETLLKEKEEKRKAEEEKQRKKEEAARKKQQQEAAKLEKMKISPSQMFTL 692
Query: 107 ETDKYSQFDETVLP 120
ETDKYSQFDE+ P
Sbjct: 693 ETDKYSQFDESGFP 706
Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/42 (61%), Positives = 29/42 (69%)
Query: 857 GLPTHDQEGKELSKGLAKKLKKLQLTQEKKYNEYIASVQKAT 898
G PTHD EGKELSKG KKL+KL QEK + EY+ VQ T
Sbjct: 704 GFPTHDTEGKELSKGQTKKLRKLFEVQEKLHKEYLQMVQNGT 745
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 28/39 (71%)
Query: 910 GLPTHDQEGKELSKGLAKKLKKLQLTQEKKYNEYIASVQ 948
G PTHD EGKELSKG KKL+KL QEK + EY+ VQ
Sbjct: 704 GFPTHDTEGKELSKGQTKKLRKLFEVQEKLHKEYLQMVQ 742
>sp|Q5M7N8|SYCC_XENTR Cysteine--tRNA ligase, cytoplasmic OS=Xenopus tropicalis GN=cars
PE=2 SV=1
Length = 747
Score = 214 bits (546), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 150/436 (34%), Positives = 205/436 (47%), Gaps = 119/436 (27%)
Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQTSKIL 492
+SYI+FDILRR+L +YF Y++ Y MNITDIDDKIIKRARQ +LF+++ + N + S +L
Sbjct: 67 ARSYISFDILRRVLRDYFKYDVFYCMNITDIDDKIIKRARQRHLFQQYRERNP-RPSDLL 125
Query: 493 KDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEA---KQDISAQPEGTINNIKNVTFQ 549
+D+ + F ++ DPDK M++ I +V A QD + ++ ++ Q
Sbjct: 126 QDVSAALTPFLQRISEANDPDKRQMLERIHGSVSAALLPLQD-AVSSNARAEELERLS-Q 183
Query: 550 KLLTAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDW 609
+L+ A D SDWLD HG+ ITDNSIF+ LPKHWE+E+H+DM LN
Sbjct: 184 ELMEAAVDLLSDWLDEKHGAQITDNSIFSQLPKHWESEYHRDMEALN------------- 230
Query: 610 LDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKP 669
VLPP VLTRVSEY+PEIVA Q
Sbjct: 231 ----------------------------------VLPPDVLTRVSEYVPEIVAFVQRIVD 256
Query: 670 AAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKA--ESSSDDDSSSEDEKPA 727
+ S S+++ HA+E K E+ D + E E
Sbjct: 257 NGYGYVSNGSVYFSTAK-------------FHASEKHYYAKLVPEAVGDQKALQEGE--- 300
Query: 728 VKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASE 787
+ S D SE + P A + +A+KPG+ S +
Sbjct: 301 -------------------GDLSISADRLSEKQSPNDFA----LWKASKPGEPSWE---- 333
Query: 788 KRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPH 847
SP W K + G WHIECS MA ++LG +DIH GG DL+FPH
Sbjct: 334 --SP-----WGKGRPG--------------WHIECSAMAGSILGESMDIHGGGFDLRFPH 372
Query: 848 HDNELAQAEGLPTHDQ 863
HDNELAQ+E +D
Sbjct: 373 HDNELAQSEAYFDNDH 388
Score = 169 bits (429), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 87/181 (48%), Positives = 115/181 (63%), Gaps = 10/181 (5%)
Query: 259 IMKEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSA 318
M EFFLNVKD +R P F KW +LEL++ F K VH ALCDN+DTR+
Sbjct: 457 FMNEFFLNVKDLLRA---PTDVTGQFVKWEVPELELNSCFYSKKAAVHEALCDNIDTRTV 513
Query: 319 LDSIRDCISQVNIYL------RGTPNQLLLRDIGAYVTKILTVFGCIGDVKNIGFPLGGT 372
++ +R +SQ N Y+ + PN+LLLR + +Y+T +L VFG I + IGFP+GG+
Sbjct: 514 MEEMRSLVSQCNSYIASRKAAKQPPNRLLLRSVSSYLTAMLKVFGAIEGEEVIGFPIGGS 573
Query: 373 GVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLRDEVLPNVGVRLEDIE 432
S NLE V+PYL +LS+FR+ +R AR K TE+L D LRD+VLP +GVRLED E
Sbjct: 574 D-NSMNLESTVMPYLQVLSQFREGVRQIARQHKVTEVLQLSDLLRDDVLPELGVRLEDHE 632
Query: 433 G 433
G
Sbjct: 633 G 633
Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/71 (66%), Positives = 55/71 (77%), Gaps = 1/71 (1%)
Query: 118 VLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPNHYYAKLVPEA 177
VLPP VLTRVSEY+PEIVA ++++I+ NG Y SNGSVYF+ F + HYYAKLVPEA
Sbjct: 231 VLPPDVLTRVSEYVPEIVA-FVQRIVDNGYGYVSNGSVYFSTAKFHASEKHYYAKLVPEA 289
Query: 178 YGDTKTLQEGE 188
GD K LQEGE
Sbjct: 290 VGDQKALQEGE 300
Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 51/74 (68%)
Query: 47 GRPSAVKLVDKETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKKIPPSEMFKM 106
G P+ VKLVD+ETL KEKE KR AE EK +KE + + AK + K+ PS+MF++
Sbjct: 633 GLPTVVKLVDRETLLKEKEEKRKAEEEKQRKKEEAARKKQQQEAAKLEKMKVSPSQMFQL 692
Query: 107 ETDKYSQFDETVLP 120
ETDKYSQFDE+ P
Sbjct: 693 ETDKYSQFDESGFP 706
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 29/42 (69%)
Query: 857 GLPTHDQEGKELSKGLAKKLKKLQLTQEKKYNEYIASVQKAT 898
G PTHD EGKELSKG +KKL+KL QEK + EY+ Q T
Sbjct: 704 GFPTHDTEGKELSKGQSKKLRKLYEAQEKLHKEYLQMAQNGT 745
Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 28/39 (71%)
Query: 910 GLPTHDQEGKELSKGLAKKLKKLQLTQEKKYNEYIASVQ 948
G PTHD EGKELSKG +KKL+KL QEK + EY+ Q
Sbjct: 704 GFPTHDTEGKELSKGQSKKLRKLYEAQEKLHKEYLQMAQ 742
>sp|Q7KN90|SYCC_DROME Cysteine--tRNA ligase, cytoplasmic OS=Drosophila melanogaster
GN=Aats-cys PE=1 SV=1
Length = 741
Score = 208 bits (529), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 148/429 (34%), Positives = 202/429 (47%), Gaps = 116/429 (27%)
Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQE-NEIQTSKI 491
+SYI+FDILRRILS+YF YNI Y MNITDIDDKII+RARQN+LF+++ E ++ ++
Sbjct: 59 ARSYISFDILRRILSDYFGYNIHYVMNITDIDDKIIRRARQNHLFDEYAAEAQKLPLDEL 118
Query: 492 LKDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDIS-AQPEGTINNIKNVTFQK 550
L EV+ F+ TDPDK M+ L + +A + ++ A +G + + ++ ++
Sbjct: 119 LGQQKEVLQRFQDTCAKNTDPDKKIMLDKTLQRMNDAVEALTKAVGKG---DEREISEKR 175
Query: 551 L--LTAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSD 608
L L +DP SDWLDSL G+ I DN++F LP++WE +FH DM LN
Sbjct: 176 LLYLNEAKDPISDWLDSLKGAQINDNAVFEALPRYWEDQFHNDMKSLN------------ 223
Query: 609 WLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPK 668
+LPP VLTRVSEY+P+IV Q
Sbjct: 224 -----------------------------------ILPPDVLTRVSEYVPQIVTFIQ--- 245
Query: 669 PAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAV 728
K +A+AA + D + + EK
Sbjct: 246 ------------------------KIIDNGLAYAANNSV------YFDVNGFDKREKHHY 275
Query: 729 KTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEK 788
AK V +A K + D S +ED +++ D + +AS+
Sbjct: 276 ---AKLVPEAY--GDTKSLQEGEGDLSIAEDR----------LSEKRSANDFALWKASKA 320
Query: 789 RSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHH 848
P + W K G P W HIECS MAS + GP DIHTGGVDLKFPHH
Sbjct: 321 GEPWWDSPWGK---GRPGW-----------HIECSAMASDIFGPTFDIHTGGVDLKFPHH 366
Query: 849 DNELAQAEG 857
DNELAQ+E
Sbjct: 367 DNELAQSEA 375
Score = 152 bits (385), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 83/185 (44%), Positives = 114/185 (61%), Gaps = 8/185 (4%)
Query: 259 IMKEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSA 318
+ EFFLNVKD R++ F+ WT+ + L +F + VHA+LCDN+DTRSA
Sbjct: 450 FLNEFFLNVKDLTRHV-LSEEPRRQFDAWTEVEAALQKKFSNAQVQVHASLCDNIDTRSA 508
Query: 319 LDSIRDCISQVNIYLRGTP---NQLLLRDIGAYVTKILTVFGCI-GDVKNIGFPLGGTGV 374
LD+IR+ +S N+Y+R N LLLR++ Y+T +L VFG I G IGFP+ G
Sbjct: 509 LDAIRELVSVSNVYIRDNKTRLNSLLLRNVATYITDLLHVFGAISGPRGGIGFPVSGGSG 568
Query: 375 EST---NLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLRDEVLPNVGVRLEDI 431
+LE VLPY+ L+EFR +R +A+ +K+ +IL CD LRD VLPN+GVRLED
Sbjct: 569 AQAAGADLETTVLPYVQSLAEFRYLVREQAKTLKAFDILKLCDDLRDNVLPNLGVRLEDK 628
Query: 432 EGKSY 436
+ Y
Sbjct: 629 DIGKY 633
Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 62/72 (86%), Gaps = 1/72 (1%)
Query: 117 TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPNHYYAKLVPE 176
+LPP VLTRVSEY+P+IV ++I+KII NGLAY +N SVYF+VN FD + H+YAKLVPE
Sbjct: 223 NILPPDVLTRVSEYVPQIV-TFIQKIIDNGLAYAANNSVYFDVNGFDKREKHHYAKLVPE 281
Query: 177 AYGDTKTLQEGE 188
AYGDTK+LQEGE
Sbjct: 282 AYGDTKSLQEGE 293
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/41 (70%), Positives = 37/41 (90%)
Query: 857 GLPTHDQEGKELSKGLAKKLKKLQLTQEKKYNEYIASVQKA 897
GLPTHD+EGKE+SKG KKL+KLQ QE++YNEY+AS++KA
Sbjct: 701 GLPTHDKEGKEVSKGQIKKLQKLQQQQEQRYNEYLASIEKA 741
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 36/44 (81%)
Query: 905 CFCFQGLPTHDQEGKELSKGLAKKLKKLQLTQEKKYNEYIASVQ 948
F GLPTHD+EGKE+SKG KKL+KLQ QE++YNEY+AS++
Sbjct: 696 AFDENGLPTHDKEGKEVSKGQIKKLQKLQQQQEQRYNEYLASIE 739
Score = 37.0 bits (84), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 47/75 (62%), Positives = 57/75 (76%), Gaps = 1/75 (1%)
Query: 46 IGRPSAVKLVDKETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKKIPPSEMFK 105
IG+ AVKLVD+++L +E+EAK AEAEKAAEKERKK A A AKEAQ+++ P EMF
Sbjct: 630 IGK-YAVKLVDRDSLLREREAKLAAEAEKAAEKERKKQAAAEAAAAKEAQRRVNPKEMFL 688
Query: 106 METDKYSQFDETVLP 120
ET+KYS FDE LP
Sbjct: 689 AETEKYSAFDENGLP 703
>sp|Q291L4|SYCC_DROPS Cysteine--tRNA ligase, cytoplasmic OS=Drosophila pseudoobscura
pseudoobscura GN=Aats-cys PE=3 SV=1
Length = 741
Score = 200 bits (509), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 146/427 (34%), Positives = 194/427 (45%), Gaps = 112/427 (26%)
Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQEN-EIQTSKI 491
+SYI+FDILRRIL++YF YNI Y MNITDIDDKIIKRARQN+LFE++ E+ + ++
Sbjct: 59 ARSYISFDILRRILADYFGYNIHYVMNITDIDDKIIKRARQNHLFEEYAGESANLPLDQL 118
Query: 492 LKDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDI-SAQPEGTINNIKNVTFQK 550
L EV+ F+ TDPDK M+ L + +A + +A +G I Q
Sbjct: 119 LGHQKEVLVRFQETCAKNTDPDKKVMLDKTLQRMNDAVVALTTAVSQGDEKGIAEKR-QH 177
Query: 551 LLTAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWL 610
L +DP ++WLD G+ I DN++F +LP+ WE +FH DM LN
Sbjct: 178 YLNEAKDPIAEWLDGKKGAEINDNAVFESLPRFWEDQFHNDMKSLN-------------- 223
Query: 611 DSLHGSSITDNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPA 670
+LPP VLTRVSEY+P+IVA Q
Sbjct: 224 ---------------------------------ILPPDVLTRVSEYVPQIVAFIQ----- 245
Query: 671 AAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKT 730
K +A+A A +S D + D K
Sbjct: 246 ----------------------KIIDNGLAYA--------ANNSVYFDVNGFDRKEK-HH 274
Query: 731 PAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRS 790
AK V +A K + D S +ED +++ D + +AS+
Sbjct: 275 YAKLVPEAY--GDTKSLQEGEGDLSVAEDR----------LSEKRSANDFALWKASKAGE 322
Query: 791 PNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDN 850
P + W + G P W HIECS MAS + G DIHTGGVDLKFPHHDN
Sbjct: 323 PWWDSPWGR---GRPGW-----------HIECSAMASDIFGSTFDIHTGGVDLKFPHHDN 368
Query: 851 ELAQAEG 857
ELAQ+E
Sbjct: 369 ELAQSEA 375
Score = 159 bits (401), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 83/185 (44%), Positives = 116/185 (62%), Gaps = 8/185 (4%)
Query: 259 IMKEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSA 318
+ EFFLNVKD R++ F+ WT + L +F ++ VHAALCDN+DTRSA
Sbjct: 450 FLNEFFLNVKDLTRHV-LSEEPRRQFDAWTDVEAALQKKFSSSQVQVHAALCDNVDTRSA 508
Query: 319 LDSIRDCISQVNIYLRGTP---NQLLLRDIGAYVTKILTVFGCI-GDVKNIGFPLGGTGV 374
LD+IR+ +S N+Y+R N LLLR++ Y+T +L VFG I G IGFP+ G
Sbjct: 509 LDAIRELVSASNVYIRDNKSRLNSLLLRNVATYITDLLHVFGAIAGPRGGIGFPVSGGAG 568
Query: 375 EST---NLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLRDEVLPNVGVRLEDI 431
+LE VLPY+ L+EFR+ +R +A+ +K+ +IL CD LRD +LPN+GVRLED
Sbjct: 569 PQAAGGDLETTVLPYVQTLAEFRNLVREQAKALKAFDILKLCDDLRDNILPNLGVRLEDK 628
Query: 432 EGKSY 436
+G +
Sbjct: 629 DGGKF 633
Score = 114 bits (284), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 52/72 (72%), Positives = 62/72 (86%), Gaps = 1/72 (1%)
Query: 117 TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPNHYYAKLVPE 176
+LPP VLTRVSEY+P+IVA +I+KII NGLAY +N SVYF+VN FD + H+YAKLVPE
Sbjct: 223 NILPPDVLTRVSEYVPQIVA-FIQKIIDNGLAYAANNSVYFDVNGFDRKEKHHYAKLVPE 281
Query: 177 AYGDTKTLQEGE 188
AYGDTK+LQEGE
Sbjct: 282 AYGDTKSLQEGE 293
Score = 39.7 bits (91), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 35/41 (85%)
Query: 857 GLPTHDQEGKELSKGLAKKLKKLQLTQEKKYNEYIASVQKA 897
GLPT D+EGKE+SKG KKL+KLQ QE++Y EY+AS+++A
Sbjct: 701 GLPTLDKEGKEISKGQVKKLQKLQQQQEQRYKEYLASIKEA 741
Score = 38.1 bits (87), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 33/39 (84%)
Query: 910 GLPTHDQEGKELSKGLAKKLKKLQLTQEKKYNEYIASVQ 948
GLPT D+EGKE+SKG KKL+KLQ QE++Y EY+AS++
Sbjct: 701 GLPTLDKEGKEISKGQVKKLQKLQQQQEQRYKEYLASIK 739
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 57/74 (77%)
Query: 47 GRPSAVKLVDKETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKKIPPSEMFKM 106
G AVKLVD+++L +E+EAK AEAEKAAEKERKK +AAA AK+AQ+++ P +MF
Sbjct: 630 GGKFAVKLVDRDSLLREREAKLAAEAEKAAEKERKKQAVAAAAAAKDAQRRVNPKQMFLG 689
Query: 107 ETDKYSQFDETVLP 120
ET+KYS FDE LP
Sbjct: 690 ETEKYSAFDENGLP 703
>sp|Q5F408|SYCC_CHICK Cysteine--tRNA ligase, cytoplasmic OS=Gallus gallus GN=CARS PE=2
SV=1
Length = 748
Score = 180 bits (456), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 104/230 (45%), Positives = 132/230 (57%), Gaps = 47/230 (20%)
Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQTSKIL 492
+SYI+FDILRRIL +YF +++ Y MNITDIDDKIIKR RQNYLFE++ ++N+ +++L
Sbjct: 68 ARSYISFDILRRILRDYFKFDVFYCMNITDIDDKIIKRTRQNYLFEQY-RKNKSTPAQLL 126
Query: 493 KDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQPEGTINNIKNVTFQKLL 552
+D+ F K+ TDPDK M++ I + V+ A F L
Sbjct: 127 EDVKTASELFSVKLSETTDPDKRQMLEKIQNAVKSA-------------------FDPLQ 167
Query: 553 TAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLDS 612
AV+ A LP + H+ LL +D LSDWLDS
Sbjct: 168 EAVQ---------------------AKLPAEEISRCHE------ILLEEAKDLLSDWLDS 200
Query: 613 LHGSSITDNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVA 662
GS +TDNSIF+ LPK WE EFHKDM LNVLPP VLTRVSEY+PEIVA
Sbjct: 201 KFGSQVTDNSIFSELPKFWEGEFHKDMEALNVLPPDVLTRVSEYVPEIVA 250
Score = 167 bits (423), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 84/181 (46%), Positives = 112/181 (61%), Gaps = 10/181 (5%)
Query: 259 IMKEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSA 318
M EFFLNVKD +R P F+KW + EL+ F K +H ALCDN+DTRS
Sbjct: 458 FMNEFFLNVKDILRA---PTDVTGQFQKWENQEAELNKNFYDKKAAIHEALCDNVDTRSV 514
Query: 319 LDSIRDCISQVNIYL------RGTPNQLLLRDIGAYVTKILTVFGCIGDVKNIGFPLGGT 372
L+ +R +SQ N Y+ R PN+LLL +I Y+T++L +FG I IGFP+GG
Sbjct: 515 LEEMRSLVSQSNSYIAAKKSARQMPNRLLLENISCYLTQMLKIFGAIESDDAIGFPVGGN 574
Query: 373 GVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLRDEVLPNVGVRLEDIE 432
++ N+E V+PYL +LSEFR+ +R AR K TE+L D LRD++LP +GVR ED E
Sbjct: 575 N-QNINIESTVMPYLQVLSEFREGVRQIAREKKVTEVLQLSDALRDDILPELGVRFEDHE 633
Query: 433 G 433
G
Sbjct: 634 G 634
Score = 135 bits (339), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 58/87 (66%), Positives = 66/87 (75%), Gaps = 2/87 (2%)
Query: 778 GDLS--SQEASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLD 835
GDLS + EK SPNDFALWK SK GEP W SPWG+GRPGWHIECS MA ++LG +D
Sbjct: 302 GDLSISADRLCEKHSPNDFALWKSSKPGEPSWDSPWGKGRPGWHIECSAMAGSILGESMD 361
Query: 836 IHTGGVDLKFPHHDNELAQAEGLPTHD 862
IH GG DL+FPHHDNELAQ+E +D
Sbjct: 362 IHGGGFDLRFPHHDNELAQSEAYFEND 388
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 54/72 (75%), Gaps = 1/72 (1%)
Query: 117 TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPNHYYAKLVPE 176
VLPP VLTRVSEY+PEIVA +++KI+ NG Y SNGSVYF+ F S H YAKLVPE
Sbjct: 231 NVLPPDVLTRVSEYVPEIVA-FVKKIVDNGYGYVSNGSVYFDTVKFGSSEKHSYAKLVPE 289
Query: 177 AYGDTKTLQEGE 188
A GD K LQEGE
Sbjct: 290 AVGDQKALQEGE 301
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/42 (66%), Positives = 30/42 (71%)
Query: 857 GLPTHDQEGKELSKGLAKKLKKLQLTQEKKYNEYIASVQKAT 898
G PTHD EGKELSKG KKLKKL TQEK Y EY+ VQ +
Sbjct: 705 GFPTHDTEGKELSKGQIKKLKKLYETQEKLYKEYLQMVQNGS 746
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/39 (71%), Positives = 29/39 (74%)
Query: 910 GLPTHDQEGKELSKGLAKKLKKLQLTQEKKYNEYIASVQ 948
G PTHD EGKELSKG KKLKKL TQEK Y EY+ VQ
Sbjct: 705 GFPTHDTEGKELSKGQIKKLKKLYETQEKLYKEYLQMVQ 743
Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 57/96 (59%), Gaps = 6/96 (6%)
Query: 31 RLNPALKLPFLPLPSI------GRPSAVKLVDKETLAKEKEAKRLAEAEKAAEKERKKAE 84
+L+ AL+ LP + G P+ VKLVDK+TL KE+E K+ E EK +KE +
Sbjct: 612 QLSDALRDDILPELGVRFEDHEGLPTVVKLVDKDTLLKEREEKKKIEEEKKRKKEEAARK 671
Query: 85 LAAAQEAKEAQKKIPPSEMFKMETDKYSQFDETVLP 120
+ AK A+ KIPP EMFK E DKYS+FDE P
Sbjct: 672 KQEQEAAKLAKMKIPPHEMFKSEHDKYSKFDENGFP 707
>sp|Q4R550|SYCC_MACFA Cysteine--tRNA ligase, cytoplasmic OS=Macaca fascicularis GN=CARS
PE=2 SV=1
Length = 748
Score = 171 bits (434), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/234 (40%), Positives = 127/234 (54%), Gaps = 49/234 (20%)
Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQTSKIL 492
+SYI+FDILRR+L +YF +++ Y MNITDIDDKIIKRARQN+LFE+++ E + +++L
Sbjct: 68 ARSYISFDILRRVLKDYFKFDVFYCMNITDIDDKIIKRARQNHLFEQYL-EKRPEAAQLL 126
Query: 493 KDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQPEGTINNIK-NVTFQKL 551
+D+ + F K+ TDPDK M++ I VQ A + + + + + N + L
Sbjct: 127 EDVQAALKPFSVKLNETTDPDKKQMLERIQHEVQLATEPLEKAVQSRLTGEEVNSCVEVL 186
Query: 552 LTAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLD 611
L +D SDWLDS GS +TDNSIF+ LPK WE EFH+DM LN
Sbjct: 187 LEEAKDLLSDWLDSTLGSDVTDNSIFSKLPKFWEGEFHRDMEALN--------------- 231
Query: 612 SLHGSSITDNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQ 665
VLPP VLTRVSEY+PEIV Q
Sbjct: 232 --------------------------------VLPPDVLTRVSEYVPEIVNFVQ 253
Score = 168 bits (425), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 83/189 (43%), Positives = 118/189 (62%), Gaps = 10/189 (5%)
Query: 251 QQSLKLVVIMKEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALC 310
+ +L+ + EFFLNVKD +R P FEKW + + EL+ F K +H ALC
Sbjct: 450 ESALQYEKFLNEFFLNVKDILRA---PVDITGQFEKWGEEEAELNKNFYDKKTAIHEALC 506
Query: 311 DNMDTRSALDSIRDCISQVNIYL------RGTPNQLLLRDIGAYVTKILTVFGCIGDVKN 364
DN+DTR+ ++ +R +SQ N+Y+ R PN+ LL +I Y+T +L +FG I + +
Sbjct: 507 DNVDTRTVMEEMRALVSQCNLYMAARKAMRKRPNRALLENIALYLTHMLKIFGAIEEESS 566
Query: 365 IGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLRDEVLPNV 424
+GFP+GG+G S NLE V+PYL +LSEFR+ +R AR K E+L D LRD++LP +
Sbjct: 567 LGFPVGGSGT-SLNLESTVMPYLQVLSEFREGVRKIAREQKVPEVLQLSDALRDDILPEL 625
Query: 425 GVRLEDIEG 433
GVR ED EG
Sbjct: 626 GVRFEDPEG 634
Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 59/87 (67%), Positives = 66/87 (75%), Gaps = 2/87 (2%)
Query: 778 GDLS--SQEASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLD 835
GDLS + SEKRSPNDFALWK SK GEP W PWG+GRPGWHIECS MA +LG +D
Sbjct: 302 GDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKGRPGWHIECSAMAGTLLGASMD 361
Query: 836 IHTGGVDLKFPHHDNELAQAEGLPTHD 862
IH GG DL+FPHHDNELAQ+E +D
Sbjct: 362 IHGGGFDLRFPHHDNELAQSEAYFEND 388
Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 53/72 (73%), Gaps = 1/72 (1%)
Query: 117 TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPNHYYAKLVPE 176
VLPP VLTRVSEY+PEIV ++++KI+ NG Y S+GSVYF+ F S H Y KLVPE
Sbjct: 231 NVLPPDVLTRVSEYVPEIV-NFVQKIVDNGYGYVSDGSVYFDTAKFASSEKHSYGKLVPE 289
Query: 177 AYGDTKTLQEGE 188
A GD K LQEGE
Sbjct: 290 AVGDQKALQEGE 301
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 57/96 (59%), Gaps = 6/96 (6%)
Query: 31 RLNPALKLPFLPLPSI------GRPSAVKLVDKETLAKEKEAKRLAEAEKAAEKERKKAE 84
+L+ AL+ LP + G P+ VKLVD+ TL KE+E KR E EK +KE
Sbjct: 612 QLSDALRDDILPELGVRFEDPEGLPTVVKLVDRNTLLKEREEKRQVEEEKRKKKEEAARR 671
Query: 85 LAAAQEAKEAQKKIPPSEMFKMETDKYSQFDETVLP 120
+ AK A+ KIPPSEMF ETDKYS+FDE LP
Sbjct: 672 KQEQEAAKLAKMKIPPSEMFLSETDKYSKFDENGLP 707
Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 30/44 (68%)
Query: 857 GLPTHDQEGKELSKGLAKKLKKLQLTQEKKYNEYIASVQKATLH 900
GLPTHD EGKELSKG AKK+KKL QEK Y EY+ Q +
Sbjct: 705 GLPTHDAEGKELSKGQAKKVKKLFEAQEKLYKEYLQMPQNGSFQ 748
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 28/35 (80%)
Query: 910 GLPTHDQEGKELSKGLAKKLKKLQLTQEKKYNEYI 944
GLPTHD EGKELSKG AKK+KKL QEK Y EY+
Sbjct: 705 GLPTHDAEGKELSKGQAKKVKKLFEAQEKLYKEYL 739
>sp|P49589|SYCC_HUMAN Cysteine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=CARS PE=1
SV=3
Length = 748
Score = 167 bits (424), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/234 (39%), Positives = 126/234 (53%), Gaps = 49/234 (20%)
Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQTSKIL 492
+SYI+FDILRR+L +YF +++ Y MNITDIDDKIIKRARQN+LFE++ +E + +++L
Sbjct: 68 ARSYISFDILRRVLKDYFKFDVFYCMNITDIDDKIIKRARQNHLFEQY-REKRPEAAQLL 126
Query: 493 KDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQPEGTINNIK-NVTFQKL 551
+D+ + F K+ TDPDK M++ I VQ A + + + + + N + L
Sbjct: 127 EDVQAALKPFSVKLNETTDPDKKQMLERIQHAVQLATEPLEKAVQSRLTGEEVNSCVEVL 186
Query: 552 LTAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLD 611
L +D SDWLDS G +TDNSIF+ LPK WE +FH+DM LN
Sbjct: 187 LEEAKDLLSDWLDSTLGCDVTDNSIFSKLPKFWEGDFHRDMEALN--------------- 231
Query: 612 SLHGSSITDNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQ 665
VLPP VLTRVSEY+PEIV Q
Sbjct: 232 --------------------------------VLPPDVLTRVSEYVPEIVNFVQ 253
Score = 164 bits (416), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 83/189 (43%), Positives = 116/189 (61%), Gaps = 10/189 (5%)
Query: 251 QQSLKLVVIMKEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALC 310
+ +L+ + EFFLNVKD +R P FEKW + + EL+ F K +H ALC
Sbjct: 450 ESALQYEKFLNEFFLNVKDILRA---PVDITGQFEKWGEEEAELNKNFYDKKTAIHKALC 506
Query: 311 DNMDTRSALDSIRDCISQVNIYL------RGTPNQLLLRDIGAYVTKILTVFGCIGDVKN 364
DN+DTR+ ++ +R +SQ N+Y+ R PNQ LL +I Y+T +L +FG + + +
Sbjct: 507 DNVDTRTVMEEMRALVSQCNLYMAARKAVRKRPNQALLENIALYLTHMLKIFGAVEEDSS 566
Query: 365 IGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLRDEVLPNV 424
+GFP+GG G S +LE V+PYL +LSEFR+ +R AR K EIL D LRD +LP +
Sbjct: 567 LGFPVGGPGT-SLSLEATVMPYLQVLSEFREGVRKIAREQKVPEILQLSDALRDNILPEL 625
Query: 425 GVRLEDIEG 433
GVR ED EG
Sbjct: 626 GVRFEDHEG 634
Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 59/87 (67%), Positives = 66/87 (75%), Gaps = 2/87 (2%)
Query: 778 GDLS--SQEASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLD 835
GDLS + SEKRSPNDFALWK SK GEP W PWG+GRPGWHIECS MA +LG +D
Sbjct: 302 GDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKGRPGWHIECSAMAGTLLGASMD 361
Query: 836 IHTGGVDLKFPHHDNELAQAEGLPTHD 862
IH GG DL+FPHHDNELAQ+E +D
Sbjct: 362 IHGGGFDLRFPHHDNELAQSEAYFEND 388
Score = 96.7 bits (239), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 53/72 (73%), Gaps = 1/72 (1%)
Query: 117 TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPNHYYAKLVPE 176
VLPP VLTRVSEY+PEIV ++++KI+ NG Y SNGSVYF+ F S H Y KLVPE
Sbjct: 231 NVLPPDVLTRVSEYVPEIV-NFVQKIVDNGYGYVSNGSVYFDTAKFASSEKHSYGKLVPE 289
Query: 177 AYGDTKTLQEGE 188
A GD K LQEGE
Sbjct: 290 AVGDQKALQEGE 301
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 30/44 (68%)
Query: 857 GLPTHDQEGKELSKGLAKKLKKLQLTQEKKYNEYIASVQKATLH 900
GLPTHD EGKELSKG AKKLKKL QEK Y EY+ Q +
Sbjct: 705 GLPTHDMEGKELSKGQAKKLKKLFEAQEKLYKEYLQMAQNGSFQ 748
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/39 (71%), Positives = 29/39 (74%)
Query: 910 GLPTHDQEGKELSKGLAKKLKKLQLTQEKKYNEYIASVQ 948
GLPTHD EGKELSKG AKKLKKL QEK Y EY+ Q
Sbjct: 705 GLPTHDMEGKELSKGQAKKLKKLFEAQEKLYKEYLQMAQ 743
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 57/96 (59%), Gaps = 6/96 (6%)
Query: 31 RLNPALKLPFLPLPSI------GRPSAVKLVDKETLAKEKEAKRLAEAEKAAEKERKKAE 84
+L+ AL+ LP + G P+ VKLVD+ TL KE+E KR E EK +KE
Sbjct: 612 QLSDALRDNILPELGVRFEDHEGLPTVVKLVDRNTLLKEREEKRRVEEEKRKKKEEAARR 671
Query: 85 LAAAQEAKEAQKKIPPSEMFKMETDKYSQFDETVLP 120
+ AK A+ KIPPSEMF ETDKYS+FDE LP
Sbjct: 672 KQEQEAAKLAKMKIPPSEMFLSETDKYSKFDENGLP 707
>sp|P53852|SYC_YEAST Cysteine--tRNA ligase OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YNL247W PE=1 SV=1
Length = 767
Score = 137 bits (344), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 63/108 (58%), Positives = 76/108 (70%), Gaps = 13/108 (12%)
Query: 778 GDLSSQEASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIH 837
G LS+ + K+S NDFALWK SKAGEP W SPWG+GRPGWHIECSVMAS +LG +DIH
Sbjct: 325 GSLSNFADNGKKSNNDFALWKASKAGEPEWESPWGKGRPGWHIECSVMASDILGSNIDIH 384
Query: 838 TGGVDLKFPHHDNELAQAEGLPTHDQ-------------EGKELSKGL 872
+GG+DL FPHHDNELAQ+E + Q EG+++SK L
Sbjct: 385 SGGIDLAFPHHDNELAQSEARFDNQQWINYFLHTGHLHIEGQKMSKSL 432
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 111/247 (44%), Gaps = 61/247 (24%)
Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQ-TSKI 491
++Y++ DI RRI+ +YF Y++ + N+TDIDDKII RARQNYLF+ V+EN+ + + +
Sbjct: 76 ARNYVSIDINRRIIQDYFGYDVQFVQNVTDIDDKIILRARQNYLFDNFVKENDTKFNATV 135
Query: 492 LKDIGEVMGAFESKMKLVTDPDKLTM--MKNILSNVQEAKQDIS-----AQPEGTINNIK 544
+ + + + +K + + T+ + LSN + N I+
Sbjct: 136 VDKVKTALFQYINKNFTIQGSEIKTIEEFETWLSNADTETLKLENPKFPMHVTAVQNAIE 195
Query: 545 NVTFQKLLTA------VRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKL 598
++T + A V+D LD GS+I++ IF LP +WE +F+ DM LN
Sbjct: 196 SITKGDSMDAEVAFEKVKDVTVPLLDKELGSTISNPEIFRQLPAYWEQKFNDDMLSLN-- 253
Query: 599 LTAVRDPLSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIP 658
VLPPTV TRVSEY+P
Sbjct: 254 ---------------------------------------------VLPPTVTTRVSEYVP 268
Query: 659 EIVASAQ 665
EI+ Q
Sbjct: 269 EIIDFVQ 275
Score = 85.9 bits (211), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 98/183 (53%), Gaps = 11/183 (6%)
Query: 260 MKEFFLNVKDHIRNLKFPATTVSSF-EKWTQADLELSTRFIQTKNNVHAALCDNMDTRSA 318
M FF IR LK A + +K++ + EL F+++++ VH+A CDN+ T A
Sbjct: 480 MNNFF----KTIRALKNDAASAGHISKKFSPLEKELLADFVESESKVHSAFCDNLSTPVA 535
Query: 319 LDSIRDCISQVNIYLRGTPNQLL---LRDIGAYVTKILTVFGCIGDVKNIGFP--LGGTG 373
L ++ + +++ N Y+ L L I +Y+TKIL + G N+G+ G
Sbjct: 536 LKTLSELVTKSNTYITTAGAALKIEPLIAICSYITKILRIIGFPSRPDNLGWAAQAGSND 595
Query: 374 VESTNLEELVLPYLTILSEFRDNIRTEA-RLIKSTEILNQCDRLRDEVLPNVGVRLEDIE 432
+LE+ V+PY+ LS FRD++R+ A + + E L D++R+E L N+ V L+D
Sbjct: 596 GSLGSLEDTVMPYVKCLSTFRDDVRSLAIKKAEPKEFLQLTDKIRNEDLLNLNVALDDRN 655
Query: 433 GKS 435
G+S
Sbjct: 656 GQS 658
Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 49/72 (68%), Gaps = 2/72 (2%)
Query: 118 VLPPTVLTRVSEYIPEIVASYIEKIIANGLAY-ESNGSVYFNVNAFDSQPNHYYAKLVPE 176
VLPPTV TRVSEY+PEI+ +++KII NG AY S+GSVYF+ FD PNH YAK P
Sbjct: 254 VLPPTVTTRVSEYVPEII-DFVQKIIDNGYAYATSDGSVYFDTLKFDKSPNHDYAKCQPW 312
Query: 177 AYGDTKTLQEGE 188
G + +GE
Sbjct: 313 NKGQLDLINDGE 324
Score = 38.1 bits (87), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 909 QGLPTHDQEGKELSKGLAKKLKKLQLTQEKKYNEYIA 945
QGLPT D++G +++K + KKLKK Q+K + EY
Sbjct: 728 QGLPTKDKDGNDITKSMTKKLKKQWEQQKKLHEEYFG 764
Score = 37.0 bits (84), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 856 EGLPTHDQEGKELSKGLAKKLKKLQLTQEKKYNEYIA 892
+GLPT D++G +++K + KKLKK Q+K + EY
Sbjct: 728 QGLPTKDKDGNDITKSMTKKLKKQWEQQKKLHEEYFG 764
>sp|Q54KR1|SYCC_DICDI Cysteine--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum
GN=cysS PE=3 SV=1
Length = 660
Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/91 (68%), Positives = 70/91 (76%), Gaps = 1/91 (1%)
Query: 774 AAKPGDLSSQEA-SEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGP 832
A G L++ A SEKRS DFALWKKSK GEP W+SPWGEGRPGWHIECS MAS +LG
Sbjct: 207 AEGEGSLTATSAVSEKRSGFDFALWKKSKPGEPVWNSPWGEGRPGWHIECSAMASDLLGG 266
Query: 833 QLDIHTGGVDLKFPHHDNELAQAEGLPTHDQ 863
+DIH+GG DLKFPHHDNELAQ+E + Q
Sbjct: 267 NIDIHSGGSDLKFPHHDNELAQSEAFYGNRQ 297
Score = 102 bits (254), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 91/180 (50%), Gaps = 22/180 (12%)
Query: 262 EFFLNVKDHIRN--LKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSAL 319
EFF K +R+ L P + WTQA+ +L+ + VH + DN +T AL
Sbjct: 369 EFFHTAKQILRDSPLSLP-------QFWTQAEKDLNKHLQNANDQVHQFILDNFNTSDAL 421
Query: 320 DSIRDCISQVNIYLRG------TPNQLLLRDIGAYVTKILTVFGCIGDV---KNIGFPLG 370
++ D +++ N+Y+R P L+ I Y+T I +VFG IGF
Sbjct: 422 KTLSDLVNKTNVYIRSCAEQKTNPRLNLISAIAEYITYIFSVFGLTESSTASSMIGFGSA 481
Query: 371 GTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLRDEVLPNVGVRLED 430
G G N+EE + P L L++FR +R A +T IL CD LRDEVLP +GV+++D
Sbjct: 482 GKG----NIEEEMTPILNALTQFRSEVRASAIAKDTTSILKTCDNLRDEVLPLLGVKIDD 537
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/71 (59%), Positives = 50/71 (70%), Gaps = 3/71 (4%)
Query: 118 VLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPNHYYAKLVPEA 177
VLPP LTRV+EY+P+IV Y+EKII+NG AYESNGSVYF+ AF H Y KL P +
Sbjct: 143 VLPPDALTRVTEYVPQIV-EYVEKIISNGFAYESNGSVYFDTVAFSKA--HDYGKLEPNS 199
Query: 178 YGDTKTLQEGE 188
G+ K EGE
Sbjct: 200 VGNEKLAAEGE 210
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 26/35 (74%)
Query: 627 LPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIV 661
L K WE F +DM LNVLPP LTRV+EY+P+IV
Sbjct: 126 LSKKWETAFFEDMKLLNVLPPDALTRVTEYVPQIV 160
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 54/101 (53%), Gaps = 15/101 (14%)
Query: 434 KSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQTSKILK 493
++YI+FDI+RRI+ Y +NI Y MNITDIDDKII RA EN I S + K
Sbjct: 79 RTYISFDIIRRIMKNYLGFNIQYVMNITDIDDKIIIRA----------NENGISHSDLSK 128
Query: 494 DIGEVMGAFESKMKL--VTDPDKLTMMKNILSNVQEAKQDI 532
+ AF MKL V PD LT + + + E + I
Sbjct: 129 ---KWETAFFEDMKLLNVLPPDALTRVTEYVPQIVEYVEKI 166
Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 857 GLPTHDQEGKELSKGLAKKLKKLQLTQEKKYNEYI 891
G+PTHD+EG E++K KKL+K Q K++N Y+
Sbjct: 607 GMPTHDKEGVEITKSQLKKLQKEYDNQTKEHNNYL 641
Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 910 GLPTHDQEGKELSKGLAKKLKKLQLTQEKKYNEYI 944
G+PTHD+EG E++K KKL+K Q K++N Y+
Sbjct: 607 GMPTHDKEGVEITKSQLKKLQKEYDNQTKEHNNYL 641
Score = 33.5 bits (75), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 98 IPPSEMFKMETDKYSQFDETVLP 120
IPP ++F ETDKYS+F+E +P
Sbjct: 587 IPPQQLFINETDKYSKFNELGMP 609
>sp|Q09860|SYC_SCHPO Probable cysteine--tRNA ligase OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC29E6.06c PE=3 SV=1
Length = 754
Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 93/235 (39%), Positives = 121/235 (51%), Gaps = 36/235 (15%)
Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFE--KHVQENEIQTSK 490
++Y+T DILRRIL YF YNIT+ N+TDIDDKII RARQ YLFE K Q S+
Sbjct: 59 ARNYVTTDILRRILQSYFGYNITFVQNVTDIDDKIILRARQQYLFEEYKKQQGTNKSHSE 118
Query: 491 ILKDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQPEGTINNIKNVTFQK 550
+ + E A+ +K L P ++ L A DI P INN K
Sbjct: 119 AREKVTEAWFAY-AKKNLPEPPSSMSEWPQWL-----ASHDI---PTLAINNPK------ 163
Query: 551 LLTAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWL 610
L D LD+L S ++ + L+ V+D L L
Sbjct: 164 -LPMHVDALKSALDALQVSEASE------------------IISLDGFWPKVQDVLVPLL 204
Query: 611 DSLHGSSITDNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQ 665
D+ GS++TD +IF L +WE +F+KDMA+LNVLPPT +TRVSEY+PEIV Q
Sbjct: 205 DAELGSTVTDPAIFRKLAAYWEDDFNKDMANLNVLPPTAVTRVSEYVPEIVDFVQ 259
Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 54/80 (67%), Positives = 63/80 (78%)
Query: 778 GDLSSQEASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIH 837
G+ S + K+ P DFALWK SK GEP W SPW +GRPGWHIECSVMASA+LG +DIH
Sbjct: 306 GEGSLAALTGKKRPGDFALWKASKPGEPSWDSPWSKGRPGWHIECSVMASALLGSNIDIH 365
Query: 838 TGGVDLKFPHHDNELAQAEG 857
+GG+DL FPHHDNELAQ+E
Sbjct: 366 SGGIDLAFPHHDNELAQSEA 385
Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 83/154 (53%), Gaps = 13/154 (8%)
Query: 285 EKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGT---PNQLL 341
EK+ + ++EL +F QT+ N H ALCD+ +T + I + ++Q NIY+R P L
Sbjct: 487 EKFDKLEIELLEKFQQTQQNTHLALCDSFNTPLVMQHIDNLVTQANIYIREVGQQPCSRL 546
Query: 342 LRDIGAYVTKILTVFGCIGDVKNIGFP--LGGTGVESTNLEEL-VLPYLTILSEFRDNIR 398
L I +++T +L +FG + G P +G + + ++ E +PY+ +S FRD +R
Sbjct: 547 LGQIASWITSMLQIFG----LDENGHPNAVGWSSSKGSSSENTDAMPYIRAVSSFRDRVR 602
Query: 399 TEARLIK--STEILNQCDRLRDEVLPNVGVRLED 430
E + K S EIL CD RD + +GV D
Sbjct: 603 -ELCIAKASSQEILKACDIFRDYDMAALGVSFND 635
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 52/72 (72%), Gaps = 3/72 (4%)
Query: 118 VLPPTVLTRVSEYIPEIVASYIEKIIANGLAYE-SNGSVYFNVNAFDSQPNHYYAKLVPE 176
VLPPT +TRVSEY+PEIV ++++II G AY ++GSVYF+ AF+ + H+YAKL P
Sbjct: 238 VLPPTAVTRVSEYVPEIV-DFVQRIIDRGYAYPVTDGSVYFDTEAFE-KGGHFYAKLEPW 295
Query: 177 AYGDTKTLQEGE 188
G+ + + EGE
Sbjct: 296 NKGNRELIAEGE 307
>sp|B3E1P0|SYC_GEOLS Cysteine--tRNA ligase OS=Geobacter lovleyi (strain ATCC BAA-1151 /
DSM 17278 / SZ) GN=cysS PE=3 SV=1
Length = 487
Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 51/70 (72%), Positives = 57/70 (81%)
Query: 788 KRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPH 847
KR+P DFALWK SK GEPWW SPWG+GRPGWHIECS M+ LGP DIH GG DL FPH
Sbjct: 175 KRNPMDFALWKGSKPGEPWWESPWGKGRPGWHIECSAMSMRFLGPSFDIHGGGKDLVFPH 234
Query: 848 HDNELAQAEG 857
H+NE+AQ+EG
Sbjct: 235 HENEIAQSEG 244
Score = 42.7 bits (99), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 434 KSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQ 473
++ I FD++ R L + Y++TY N TDIDDKII RA Q
Sbjct: 43 RAGIVFDMIYRYL-RFSGYDVTYIRNYTDIDDKIINRANQ 81
>sp|Q6DJ95|SYCM_XENTR Probable cysteine--tRNA ligase, mitochondrial OS=Xenopus tropicalis
GN=cars2 PE=2 SV=1
Length = 572
Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 55/88 (62%), Positives = 66/88 (75%), Gaps = 1/88 (1%)
Query: 779 DLSSQEASE-KRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIH 837
D +S+ AS+ KR DFALWK SK EP+W+SPWG+GRPGWHIECS +AS+V G LDIH
Sbjct: 216 DTASESASQDKRHIRDFALWKTSKPEEPYWASPWGKGRPGWHIECSTIASSVFGKHLDIH 275
Query: 838 TGGVDLKFPHHDNELAQAEGLPTHDQEG 865
TGG+DL FPHH+NE+AQ E Q G
Sbjct: 276 TGGIDLAFPHHENEIAQCEAYHQSTQWG 303
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 44/67 (65%), Gaps = 7/67 (10%)
Query: 118 VLPPTVLTRVSEYIPEIVASYIEKIIANGLAY-ESNGSVYFNVNAFDSQPNHYYAKLVPE 176
VLPPTV RV+E IP+I+ S+IE IIANG AY S G+VYF+V + + Y K +
Sbjct: 159 VLPPTVYMRVTENIPQII-SFIEHIIANGYAYATSQGNVYFDVQSIGER----YGKF-ND 212
Query: 177 AYGDTKT 183
++ DT +
Sbjct: 213 SFSDTAS 219
Score = 42.7 bits (99), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 627 LPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVA 662
L + +E +F +DM L VLPPTV RV+E IP+I++
Sbjct: 142 LARTYEQDFKQDMTALKVLPPTVYMRVTENIPQIIS 177
>sp|A1RYM3|SYC_THEPD Cysteine--tRNA ligase OS=Thermofilum pendens (strain Hrk 5) GN=cysS
PE=3 SV=1
Length = 474
Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 55/81 (67%), Positives = 63/81 (77%), Gaps = 2/81 (2%)
Query: 780 LSSQE--ASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIH 837
+ SQE ASEK++P DFALWK K GEP+W SPWG GRPGWHIECSVM+S LG + DIH
Sbjct: 162 MWSQEEFASEKKNPYDFALWKARKPGEPYWDSPWGPGRPGWHIECSVMSSKYLGRRFDIH 221
Query: 838 TGGVDLKFPHHDNELAQAEGL 858
GG DL FPHH+NE AQ+E L
Sbjct: 222 GGGTDLIFPHHENERAQSEAL 242
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRAR 472
++Y+ FD+++R L Y++ + NITDIDDKII RAR
Sbjct: 41 ARTYVAFDVIKRYL-RLRGYDVVHVQNITDIDDKIINRAR 79
Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 30/38 (78%), Gaps = 2/38 (5%)
Query: 126 RVSEYIPEIVASYIEKIIANGLAYES-NGSVYFNVNAF 162
RV+E+I EI+ +++K+I +G AY + +GSVYF+V+ +
Sbjct: 112 RVTEHISEII-DFVQKLIDSGHAYVAPSGSVYFDVDTY 148
>sp|Q8BYM8|SYCM_MOUSE Probable cysteine--tRNA ligase, mitochondrial OS=Mus musculus
GN=Cars2 PE=2 SV=2
Length = 551
Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/117 (50%), Positives = 72/117 (61%), Gaps = 6/117 (5%)
Query: 775 AKPGDLSSQEASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQL 834
A+PGD S+KR +DFALWK +K E +W+SPWG+GRPGWHIECS MAS V G L
Sbjct: 201 AEPGD------SDKRHSSDFALWKAAKPQEVFWASPWGDGRPGWHIECSTMASEVFGSHL 254
Query: 835 DIHTGGVDLKFPHHDNELAQAEGLPTHDQEGKELSKGLAKKLKKLQLTQEKKYNEYI 891
DIHTGG+DL FPHH+NE+AQ+E Q G +K + K YI
Sbjct: 255 DIHTGGIDLAFPHHENEIAQSEVFHQCQQWGNYFLHSGHLHVKGTEEKMSKSLKNYI 311
Score = 60.1 bits (144), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 107/413 (25%), Positives = 160/413 (38%), Gaps = 103/413 (24%)
Query: 118 VLPPTVLTRVSEYIPEIVASYIEKIIANGLAYES-NGSVYFNVNAFDSQPNHYYAKL--- 173
VLPPTV RV+E IP+I+A +IE IIA+G AY + GSVYF+++A + Y KL
Sbjct: 141 VLPPTVYLRVTENIPQIIA-FIEGIIAHGHAYSTATGSVYFDLHARGDK----YGKLVNT 195
Query: 174 VPEAY---GDT-----------KTLQEGEV-------RGYPPWPARIEGLADET-PNRLK 211
VP A GD+ K + EV G P W +A E + L
Sbjct: 196 VPSATAEPGDSDKRHSSDFALWKAAKPQEVFWASPWGDGRPGWHIECSTMASEVFGSHLD 255
Query: 212 YHI----FFYGTRETGICRQDELFPYTEFKDKYGKVRVHLSQK------QQSLKLVVIMK 261
H + E I Q E+F + Y HL K +SLK + +K
Sbjct: 256 IHTGGIDLAFPHHENEIA-QSEVFHQCQQWGNYFLHSGHLHVKGTEEKMSKSLKNYITIK 314
Query: 262 EFFLNVKDHIRNLKFPATTVSSFEKWTQADLE---------------------------- 293
+F + L T S +++ + L
Sbjct: 315 DFLKTFSPDVFRLFCLRTNYRSAIEYSDSTLVEAKHLLLGLASFVEDARAYVKGQLTCGP 374
Query: 294 -----LSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGTPNQLLLRDIGAY 348
L R TK V AAL ++ DT A+++I D + N LR + A
Sbjct: 375 VEEDVLWERLTSTKKAVKAALANDFDTPRAVNTILDLVHHANRQLRAVSKE-------AS 427
Query: 349 VTKILTVFGCIGD-----VKNIGFPLGGTGVESTNLEELVLPYLTI-LSEFRDNIR---- 398
+ TVFG I + +G L S + + L + L FR +R
Sbjct: 428 GPRSPTVFGAIISYVEQFFETVGISLANRQCVSGDSSTVTLRCVVDELVRFRLKVRQYAL 487
Query: 399 ------TEAR---LIKSTEILNQCDRLRDEVLPNVGVRLEDIEGKSYITFDIL 442
EAR L + +L CD LR +++ + G+ ++D G + T+++L
Sbjct: 488 DTPGAAGEARKRQLQERQPLLEACDTLRQDLVTH-GINVKD-RGSAASTWELL 538
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 31/39 (79%)
Query: 435 SYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQ 473
SY+ FDI+RRIL+ F N+ AM+ITD+DDKIIKRA +
Sbjct: 78 SYVRFDIIRRILTRVFGCNVVMAMSITDVDDKIIKRANE 116
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 28/38 (73%)
Query: 625 ATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVA 662
A+L +E EF +DMA L VLPPTV RV+E IP+I+A
Sbjct: 122 ASLASLFEEEFKQDMAALKVLPPTVYLRVTENIPQIIA 159
>sp|Q6PA41|SYCM_XENLA Probable cysteine--tRNA ligase, mitochondrial OS=Xenopus laevis
GN=cars2 PE=2 SV=1
Length = 572
Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 54/88 (61%), Positives = 65/88 (73%), Gaps = 1/88 (1%)
Query: 779 DLSSQEA-SEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIH 837
D +S+ A +KR DFALWK SK EP+W+SPWG+GRPGWHIECS +AS+V G LDIH
Sbjct: 216 DAASESALQDKRHIRDFALWKTSKPEEPYWASPWGKGRPGWHIECSTIASSVFGKHLDIH 275
Query: 838 TGGVDLKFPHHDNELAQAEGLPTHDQEG 865
TGG+DL FPHH+NE+AQ E Q G
Sbjct: 276 TGGIDLAFPHHENEIAQCEAYHQSTQWG 303
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 30/39 (76%)
Query: 435 SYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQ 473
SY+ FD +RRIL + F +I AM +TDIDDKIIKRA++
Sbjct: 96 SYVRFDTIRRILLKVFGIDIVMAMVVTDIDDKIIKRAKE 134
Score = 40.0 bits (92), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 76/311 (24%), Positives = 126/311 (40%), Gaps = 72/311 (23%)
Query: 118 VLPPTVLTRVSEYIPEIVASYIEKIIANGLAYE-SNGSVYFNVNAFDSQPNHYYAKLV-- 174
VLPPTV RV+E IP+I++ I++IIANG AY S G+VYF+V + Q +
Sbjct: 159 VLPPTVYMRVTESIPQIISF-IQQIIANGHAYSTSQGNVYFDVQSIGDQYGKFNDSFCDA 217
Query: 175 --PEAYGDTKTLQEGEV----------------RGYPPWPARIEGLADETPNR-LKYHI- 214
A D + +++ + +G P W +A + L H
Sbjct: 218 ASESALQDKRHIRDFALWKTSKPEEPYWASPWGKGRPGWHIECSTIASSVFGKHLDIHTG 277
Query: 215 ---FFYGTRETGICRQDELFPYTEFKDKYGKV-RVHLSQKQQ----SLKLVVIMKEFFLN 266
+ E I + + T++ + + +HL ++ SLK V +KEF +
Sbjct: 278 GIDLAFPHHENEIAQCEAYHQSTQWGNYFLHTGHLHLKGNEEKMSKSLKNYVTIKEFLKS 337
Query: 267 VK-DHIRNL----KFPATT----------------VSSFEKWTQADLE------------ 293
DH+R K+ + +SSF +A L+
Sbjct: 338 FSPDHLRMFCLRSKYKSAVEYSKESMHDAVNTLHLISSFVDDAKAYLKGQLICQPVQETL 397
Query: 294 LSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGTPNQ-------LLLRDIG 346
L R +TK NV AA D+ DT A+D++ D I N L+ + ++ +
Sbjct: 398 LWQRLNETKVNVKAAFSDDFDTPRAVDAVLDLIHHGNRQLKAVSKESSSPRSPIVYGAMV 457
Query: 347 AYVTKILTVFG 357
+Y+ + L + G
Sbjct: 458 SYIEQFLEIMG 468
Score = 35.0 bits (79), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 627 LPKHWEAEFHKDMADLNVLPPTVLTRVSE 655
L + +E +F +DM L VLPPTV RV+E
Sbjct: 142 LARTYEQDFKQDMTALRVLPPTVYMRVTE 170
>sp|Q83BL7|SYC_COXBU Cysteine--tRNA ligase OS=Coxiella burnetii (strain RSA 493 / Nine
Mile phase I) GN=cysS PE=1 SV=2
Length = 460
Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 50/69 (72%), Positives = 58/69 (84%)
Query: 788 KRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPH 847
KR P DF LWKK+K GEP W SPWGEGRPGWHIECS M+S++LG DIH GG+DLKFPH
Sbjct: 176 KRDPLDFVLWKKAKPGEPKWDSPWGEGRPGWHIECSAMSSSILGQPFDIHGGGLDLKFPH 235
Query: 848 HDNELAQAE 856
H+NE+AQ+E
Sbjct: 236 HENEIAQSE 244
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQN 474
G+S+I FD++ R L Y +T+ NITDIDDKIIKRA +N
Sbjct: 42 GRSWIIFDMVVRYL-RMRGYEVTFVRNITDIDDKIIKRAGEN 82
Score = 37.0 bits (84), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 118 VLPPTVLTRVSEYIPEIVASYIEKIIANGLAYES-NGSVYFNVNAF 162
VL P R ++Y+PEI+ I+K++ N AY NG V+F+V F
Sbjct: 106 VLSPDQEPRATQYVPEII-KLIQKLLDNQYAYTGQNGDVFFDVRRF 150
>sp|Q2KIF8|SYCM_BOVIN Cysteine--tRNA ligase, mitochondrial OS=Bos taurus GN=CARS2 PE=2
SV=1
Length = 555
Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 80/135 (59%), Gaps = 2/135 (1%)
Query: 777 PGDLSSQEASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDI 836
PG + S+KR +DFALWK +K EP+W SPWG+GRPGWHIECS +AS V G QLDI
Sbjct: 204 PGPVGEPVDSDKRHTSDFALWKAAKPQEPFWGSPWGDGRPGWHIECSTIASLVFGSQLDI 263
Query: 837 HTGGVDLKFPHHDNELAQAEGLPTHDQEGKEL--SKGLAKKLKKLQLTQEKKYNEYIASV 894
H+GGVDL FPHH+NE+AQ E Q G S L K ++++ K I
Sbjct: 264 HSGGVDLAFPHHENEIAQCEAFHQCPQWGNYFLHSGHLHVKGGGEKMSKSLKNYVTIKDF 323
Query: 895 QKATLHGLLVCFCFQ 909
++T + FC +
Sbjct: 324 LRSTSPDVFRLFCLR 338
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 28/39 (71%)
Query: 435 SYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQ 473
SY+ FDI+RRILS F + M ITD+DDKII+RA +
Sbjct: 85 SYVRFDIIRRILSRVFGCTVVMVMGITDVDDKIIRRANE 123
Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%), Gaps = 6/63 (9%)
Query: 118 VLPPTVLTRVSEYIPEIVASYIEKIIANGLAY-ESNGSVYFNVNAFDSQPNHYYAKLVPE 176
VLPPT RV+E++P+IVA +IE++IANG AY + G+VYF++ + + Y KLV
Sbjct: 148 VLPPTAYLRVTEHVPQIVA-FIERLIANGHAYCTAKGNVYFDLQSRGDR----YGKLVGV 202
Query: 177 AYG 179
A G
Sbjct: 203 APG 205
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 29/38 (76%)
Query: 625 ATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVA 662
A+L + +E +F +DMA L VLPPT RV+E++P+IVA
Sbjct: 129 ASLARLYEEDFKQDMAALKVLPPTAYLRVTEHVPQIVA 166
Score = 38.1 bits (87), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 74/172 (43%), Gaps = 37/172 (21%)
Query: 294 LSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYL-------RGTPNQLLLRDIG 346
L R +TK V AAL D+ DT A+D++ D + N L RG + +L G
Sbjct: 387 LWERLGRTKAAVQAALADDFDTVRAVDAVMDLVHHGNRQLKAASEEPRGPRSPAVL---G 443
Query: 347 AYVTKILTVFGCIGD--VKNIGFPLGGTGVESTNL-EELVLPYLTILSEFRDNIRTEA-- 401
A V + F +G + P G+ +L EELV FR +R A
Sbjct: 444 AVVASVEHFFETVGVSLAERQCVPGAGSPAALYSLVEELV--------RFRLKVRQFALA 495
Query: 402 -----------RLIKSTEILNQCDRLRDEVLPNVGVRLEDIEGKSYITFDIL 442
RL++ +L CD LR ++ + G+ ++D G S T+++L
Sbjct: 496 SGEAPGEARRQRLLERQPLLEACDALRRDLAVH-GISIKDRSGSS--TWELL 544
>sp|A9N924|SYC_COXBR Cysteine--tRNA ligase OS=Coxiella burnetii (strain RSA 331 /
Henzerling II) GN=cysS PE=3 SV=1
Length = 458
Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 50/69 (72%), Positives = 58/69 (84%)
Query: 788 KRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPH 847
KR P DF LWKK+K GEP W SPWGEGRPGWHIECS M+S++LG DIH GG+DLKFPH
Sbjct: 174 KRDPLDFVLWKKAKPGEPKWDSPWGEGRPGWHIECSAMSSSILGQPFDIHGGGLDLKFPH 233
Query: 848 HDNELAQAE 856
H+NE+AQ+E
Sbjct: 234 HENEIAQSE 242
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQN 474
G+S+I FD++ R L Y +T+ NITDIDDKIIKRA +N
Sbjct: 40 GRSWIIFDMVVRYL-RMRGYEVTFVRNITDIDDKIIKRAGEN 80
Score = 37.0 bits (84), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 118 VLPPTVLTRVSEYIPEIVASYIEKIIANGLAYES-NGSVYFNVNAF 162
VL P R ++Y+PEI+ I+K++ N AY NG V+F+V F
Sbjct: 104 VLSPDQEPRATQYVPEII-KLIQKLLDNQYAYTGQNGDVFFDVRRF 148
>sp|A9KBJ2|SYC_COXBN Cysteine--tRNA ligase OS=Coxiella burnetii (strain Dugway
5J108-111) GN=cysS PE=3 SV=1
Length = 458
Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 50/69 (72%), Positives = 58/69 (84%)
Query: 788 KRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPH 847
KR P DF LWKK+K GEP W SPWGEGRPGWHIECS M+S++LG DIH GG+DLKFPH
Sbjct: 174 KRDPLDFVLWKKAKPGEPKWDSPWGEGRPGWHIECSAMSSSILGQPFDIHGGGLDLKFPH 233
Query: 848 HDNELAQAE 856
H+NE+AQ+E
Sbjct: 234 HENEIAQSE 242
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQN 474
G+S+I FD++ R L Y +T+ NITDIDDKIIKRA +N
Sbjct: 40 GRSWIIFDMVVRYL-RMRGYEVTFVRNITDIDDKIIKRAGEN 80
Score = 37.0 bits (84), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 118 VLPPTVLTRVSEYIPEIVASYIEKIIANGLAYES-NGSVYFNVNAF 162
VL P R ++Y+PEI+ I+K++ N AY NG V+F+V F
Sbjct: 104 VLSPDQEPRATQYVPEII-KLIQKLLDNQYAYTGQNGDVFFDVRRF 148
>sp|Q8U227|SYC_PYRFU Cysteine--tRNA ligase OS=Pyrococcus furiosus (strain ATCC 43587 /
DSM 3638 / JCM 8422 / Vc1) GN=cysS PE=3 SV=2
Length = 477
Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 51/75 (68%), Positives = 59/75 (78%)
Query: 788 KRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPH 847
K++P DFALWKK+K GEP W SPWGEGRPGWHIECSVM+S LG DIH GG DL FPH
Sbjct: 174 KKNPEDFALWKKAKPGEPKWDSPWGEGRPGWHIECSVMSSKYLGESFDIHGGGNDLIFPH 233
Query: 848 HDNELAQAEGLPTHD 862
H+NE+AQ+E H+
Sbjct: 234 HENEIAQSEACFGHE 248
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Query: 434 KSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQN 474
++YI FD++RR L E+ Y + MN TDIDDKIIKRAR+
Sbjct: 42 RTYIAFDVIRRYL-EHKGYTVLMVMNFTDIDDKIIKRARET 81
Score = 33.9 bits (76), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 118 VLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAF 162
V P + RV+++I +I+ +I K+ G AYE + +YF V F
Sbjct: 105 VKPADIYPRVTDHIDDII-EFIGKLKEKGYAYEGSDGIYFEVKKF 148
>sp|A5IBG0|SYC_LEGPC Cysteine--tRNA ligase OS=Legionella pneumophila (strain Corby)
GN=cysS PE=3 SV=1
Length = 456
Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 52/70 (74%), Positives = 58/70 (82%)
Query: 787 EKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFP 846
EKRSP DF LWKK+K GEP W SPWGEGRPGWHIECS MA LG Q DIH GG+DL+FP
Sbjct: 174 EKRSPLDFVLWKKAKPGEPSWPSPWGEGRPGWHIECSAMAMHELGEQFDIHGGGLDLQFP 233
Query: 847 HHDNELAQAE 856
HH+NE+AQ+E
Sbjct: 234 HHENEIAQSE 243
Score = 42.4 bits (98), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 434 KSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQ 473
+S + FD++ R L +++TY NITDIDDKII RA +
Sbjct: 42 RSMVAFDVMVRYLRSQ-GFDVTYVRNITDIDDKIIARASE 80
>sp|Q5WX29|SYC_LEGPL Cysteine--tRNA ligase OS=Legionella pneumophila (strain Lens)
GN=cysS PE=3 SV=1
Length = 456
Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 52/70 (74%), Positives = 58/70 (82%)
Query: 787 EKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFP 846
EKRSP DF LWKK+K GEP W SPWGEGRPGWHIECS MA LG Q DIH GG+DL+FP
Sbjct: 174 EKRSPLDFVLWKKAKPGEPSWPSPWGEGRPGWHIECSAMAMHELGEQFDIHGGGLDLQFP 233
Query: 847 HHDNELAQAE 856
HH+NE+AQ+E
Sbjct: 234 HHENEIAQSE 243
Score = 42.4 bits (98), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 434 KSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQ 473
+S + FD++ R L +++TY NITDIDDKII RA +
Sbjct: 42 RSMVAFDVMVRYLRSQ-GFDVTYVRNITDIDDKIIARASE 80
>sp|Q9UYV2|SYC_PYRAB Cysteine--tRNA ligase OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=cysS PE=3 SV=1
Length = 477
Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 51/75 (68%), Positives = 59/75 (78%)
Query: 788 KRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPH 847
K++P DFALWKK+K GEP W SPWGEGRPGWHIECSVM+S LG DIH GG DL FPH
Sbjct: 175 KKNPEDFALWKKAKPGEPKWDSPWGEGRPGWHIECSVMSSKYLGESFDIHGGGNDLIFPH 234
Query: 848 HDNELAQAEGLPTHD 862
H+NE+AQ+E H+
Sbjct: 235 HENEIAQSEACFGHE 249
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 30/40 (75%), Gaps = 1/40 (2%)
Query: 434 KSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQ 473
++YI FD++RR L E+ + + MN TDIDDKIIKRA++
Sbjct: 43 RTYIAFDVIRRYL-EHRGFTVLMVMNFTDIDDKIIKRAQE 81
Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 22/162 (13%)
Query: 271 IRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVN 330
+ N++ KW++ D E + + + A+ D+ +T AL ++ + + +N
Sbjct: 323 LENIRIAMRNAELSYKWSEKDFEAYEAIREARKKFYDAMDDDFNTAEALKAVFEVSNAIN 382
Query: 331 IYLRGT--PNQLLLRDIGAYVTKILTVFGCIGDVKNIGFPLGGTGVESTNLEELVLPYLT 388
Y+ P + +LR + + VFG D F G E +E LV
Sbjct: 383 KYILEVDKPKESILRKALEFFKVVSEVFGIFEDY----FKEEKKGEEEKLIELLV----- 433
Query: 389 ILSEFRDNIRTEARLIKSTEILNQCDRLRDEVLPNVGVRLED 430
E R +R E R + D++R+E L +G++LED
Sbjct: 434 ---EVRKQLRKEKR-------FDLADKIREE-LRKLGIQLED 464
Score = 37.0 bits (84), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 118 VLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAF 162
V P + RV+E+I +I+ +I+K+ G AYE + VYF V F
Sbjct: 106 VKPADIYPRVTEHIDDII-EFIKKLKEKGYAYEGSDGVYFEVQKF 149
>sp|B1I0T1|SYC_DESAP Cysteine--tRNA ligase OS=Desulforudis audaxviator (strain MP104C)
GN=cysS PE=3 SV=1
Length = 478
Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 55/73 (75%)
Query: 785 ASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLK 844
+KR P DFALWK +K GEPWW SPWG GRPGWHIECS MA LG DIH GG DL
Sbjct: 170 GEQKRDPLDFALWKAAKPGEPWWESPWGRGRPGWHIECSAMALKYLGTGFDIHGGGADLI 229
Query: 845 FPHHDNELAQAEG 857
FPHH+NE+AQ+EG
Sbjct: 230 FPHHENEIAQSEG 242
Score = 40.4 bits (93), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 434 KSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQ 473
++ + FD +RR Y Y + Y N TD+DDKII R+R+
Sbjct: 41 RALVVFDTIRRYFL-YKGYRVLYIQNFTDVDDKIINRSRE 79
Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 126 RVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAF 162
+VS++IPEI+A I II GLAY + G VYF V F
Sbjct: 112 KVSDHIPEIIA-LITMIIDRGLAYVAGGDVYFAVRKF 147
>sp|Q5ZVY1|SYC_LEGPH Cysteine--tRNA ligase OS=Legionella pneumophila subsp. pneumophila
(strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=cysS
PE=3 SV=1
Length = 456
Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 52/70 (74%), Positives = 58/70 (82%)
Query: 787 EKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFP 846
EKRSP DF LWKK+K GEP W SPWGEGRPGWHIECS MA LG Q DIH GG+DL+FP
Sbjct: 174 EKRSPLDFVLWKKAKPGEPSWPSPWGEGRPGWHIECSAMAMHELGEQFDIHGGGLDLQFP 233
Query: 847 HHDNELAQAE 856
HH+NE+AQ+E
Sbjct: 234 HHENEIAQSE 243
Score = 42.4 bits (98), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 434 KSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQ 473
+S + FD++ R L +++TY NITDIDDKII RA +
Sbjct: 42 RSMVAFDVMVRYLRSQ-GFDVTYVRNITDIDDKIIARASE 80
>sp|O58370|SYC_PYRHO Cysteine--tRNA ligase OS=Pyrococcus horikoshii (strain ATCC 700860
/ DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=cysS
PE=3 SV=1
Length = 476
Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 53/86 (61%), Positives = 61/86 (70%)
Query: 788 KRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPH 847
K++P DFALWKK+K GEP W SPWGEGRPGWHIECSVM+S LG DIH GG DL FPH
Sbjct: 175 KKNPEDFALWKKAKPGEPKWESPWGEGRPGWHIECSVMSSKYLGESFDIHGGGNDLIFPH 234
Query: 848 HDNELAQAEGLPTHDQEGKELSKGLA 873
H+NE+AQ+E H+ L G
Sbjct: 235 HENEIAQSEACFGHEWVHYWLHTGFV 260
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 31/40 (77%), Gaps = 1/40 (2%)
Query: 434 KSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQ 473
++YI FD++RR L E+ Y++ MN TDIDDKII+RA++
Sbjct: 43 RTYIAFDVIRRYL-EHKGYSVLMVMNFTDIDDKIIRRAKE 81
Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 118 VLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAF 162
V P + RV+E+I +I+ +IE++ G AYE + VYF V F
Sbjct: 106 VKPADIYPRVTEHIEDII-QFIERLKEKGYAYEGSDGVYFEVQKF 149
>sp|Q5X5P9|SYC_LEGPA Cysteine--tRNA ligase OS=Legionella pneumophila (strain Paris)
GN=cysS PE=3 SV=1
Length = 456
Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 52/70 (74%), Positives = 58/70 (82%)
Query: 787 EKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFP 846
EKRSP DF LWKK+K GEP W SPWGEGRPGWHIECS MA LG Q DIH GG+DL+FP
Sbjct: 174 EKRSPLDFVLWKKAKPGEPSWPSPWGEGRPGWHIECSAMAMHELGEQFDIHGGGLDLQFP 233
Query: 847 HHDNELAQAE 856
HH+NE+AQ+E
Sbjct: 234 HHENEIAQSE 243
Score = 42.4 bits (98), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 434 KSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQ 473
+S + FD++ R L +++TY NITDIDDKII RA +
Sbjct: 42 RSMVAFDVMVRYLRSQ-GFDVTYVRNITDIDDKIIARASE 80
>sp|C5A739|SYC_THEGJ Cysteine--tRNA ligase OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=cysS PE=3 SV=1
Length = 476
Score = 124 bits (311), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 72/113 (63%), Gaps = 14/113 (12%)
Query: 788 KRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPH 847
KR+P DFALWKK+K GEP W SPWGEGRPGWHIECS M+S LG DIH GG DL FPH
Sbjct: 175 KRNPEDFALWKKAKPGEPKWESPWGEGRPGWHIECSTMSSKYLGESFDIHGGGNDLIFPH 234
Query: 848 HDNELAQAEGLPTHDQ------------EGKELSKGLAKKLKKLQLTQEKKYN 888
H+NE+AQ+E H+ G+++SK L + +L K+YN
Sbjct: 235 HENEIAQSEACFGHEWVHYWMHTGFLMVNGEKMSKSLGNFVTVRELL--KRYN 285
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 434 KSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQ 473
++YI FD++RR L E+ Y + MN TDIDDKIIKRA +
Sbjct: 43 RTYIAFDVIRRYL-EHKGYTVLMVMNFTDIDDKIIKRANE 81
Score = 37.7 bits (86), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 118 VLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAF 162
V P + RV+E++ +I+ S+I+K+ G AYE + VYF V F
Sbjct: 106 VKPADIYPRVTEHMQDII-SFIKKLQEKGYAYEGSDGVYFEVRKF 149
>sp|B5YID4|SYC_THEYD Cysteine--tRNA ligase OS=Thermodesulfovibrio yellowstonii (strain
ATCC 51303 / DSM 11347 / YP87) GN=cysS PE=3 SV=1
Length = 487
Score = 124 bits (310), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 49/71 (69%), Positives = 55/71 (77%)
Query: 788 KRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPH 847
K+SP DFALWK SK GEPWW SPWG+GRPGWHIECS M+ LG DIH GG DL FPH
Sbjct: 177 KKSPLDFALWKASKPGEPWWDSPWGKGRPGWHIECSAMSIKYLGETFDIHGGGADLIFPH 236
Query: 848 HDNELAQAEGL 858
H+NE+AQ+E
Sbjct: 237 HENEIAQSEAF 247
Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Query: 425 GVRLEDI----EGKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKH 480
GV + D+ +S + FD++ + L Y Y + + N TDIDDKII RA + + K
Sbjct: 28 GVTVYDLCHIGHARSAVVFDVIVKYL-RYKGYEVKFVKNFTDIDDKIINRANKEGVSWKE 86
Query: 481 VQENEIQTSKILKDI 495
+ E T + KD+
Sbjct: 87 IAEK--YTGEYYKDM 99
>sp|Q4JCA6|SYC_SULAC Cysteine--tRNA ligase OS=Sulfolobus acidocaldarius (strain ATCC
33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
GN=cysS PE=3 SV=1
Length = 469
Score = 123 bits (309), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 58/72 (80%)
Query: 787 EKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFP 846
EK++P DFALWK K GEP+W SPWG+GRPGWHIECS M++ LG Q DIH GGVDL FP
Sbjct: 173 EKKNPYDFALWKAWKPGEPYWESPWGKGRPGWHIECSTMSTRYLGEQFDIHGGGVDLVFP 232
Query: 847 HHDNELAQAEGL 858
HH+NE AQ+E L
Sbjct: 233 HHENERAQSESL 244
Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQ 473
G++++ FD + R L + +N+ NITDIDDKIIKRA +
Sbjct: 43 GRAFVGFDGIVRYL-KLRGFNVIRVQNITDIDDKIIKRANE 82
Score = 35.0 bits (79), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 30/40 (75%), Gaps = 2/40 (5%)
Query: 126 RVSEYIPEIVASYIEKIIANGLAY-ESNGSVYFNVNAFDS 164
RV+ +I EI+ +++K++ G AY S+GSVYF+V++F S
Sbjct: 114 RVTSHIQEII-DFVQKLVDKGHAYITSSGSVYFDVDSFPS 152
>sp|B2GAB5|SYC_LACF3 Cysteine--tRNA ligase OS=Lactobacillus fermentum (strain NBRC 3956
/ LMG 18251) GN=cysS PE=3 SV=1
Length = 472
Score = 123 bits (309), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 50/82 (60%), Positives = 63/82 (76%)
Query: 780 LSSQEASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTG 839
+S++E ++K+ P DFALWK +K GE W SPWG GRPGWHIECSVM++ LG LDIH G
Sbjct: 170 VSTEEVAKKKDPLDFALWKAAKPGEIKWDSPWGAGRPGWHIECSVMSTKYLGDTLDIHAG 229
Query: 840 GVDLKFPHHDNELAQAEGLPTH 861
G DL+FPHH+NE+AQ+E H
Sbjct: 230 GQDLEFPHHENEIAQSEAKTGH 251
Score = 41.6 bits (96), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 434 KSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQ 473
+S + FD +RR L E+ Y + Y N TD+DDK+IK A++
Sbjct: 42 RSVVAFDTVRRYL-EFSGYQVNYVSNFTDVDDKMIKAAKE 80
Score = 36.2 bits (82), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 118 VLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAF 162
V P T R +E I I+ S+IE +I G AY+S G VY+ F
Sbjct: 105 VEPATTHPRATENIDGII-SFIEDLIEKGYAYQSGGDVYYRARKF 148
>sp|B6YUQ3|SYC_THEON Cysteine--tRNA ligase OS=Thermococcus onnurineus (strain NA1)
GN=cysS PE=3 SV=1
Length = 476
Score = 123 bits (308), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 49/75 (65%), Positives = 58/75 (77%)
Query: 788 KRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPH 847
K++P DFALWKK+K GEP W SPWGEGRPGWHIECS M++ LG DIH GG DL FPH
Sbjct: 175 KKNPEDFALWKKAKPGEPKWESPWGEGRPGWHIECSTMSTKYLGESFDIHGGGNDLIFPH 234
Query: 848 HDNELAQAEGLPTHD 862
H+NE+AQ+E H+
Sbjct: 235 HENEIAQSEACTGHE 249
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 434 KSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQ 473
++YI FD++RR L E+ Y + MN TDIDDKII+RA +
Sbjct: 43 RTYIAFDVIRRYL-EHRGYTVLMVMNFTDIDDKIIRRANE 81
Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 118 VLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAF 162
V P + RV+E+I +I+ ++ K+ G AYE N VYF V F
Sbjct: 106 VKPADIYPRVTEHIQDII-DFVRKLQEKGYAYEGNDGVYFEVRKF 149
>sp|A8F596|SYC_THELT Cysteine--tRNA ligase OS=Thermotoga lettingae (strain ATCC BAA-301
/ DSM 14385 / TMO) GN=cysS PE=3 SV=1
Length = 463
Score = 123 bits (308), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 62/88 (70%)
Query: 787 EKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFP 846
+KR P DFALWK +K GEP+W SPWG GRPGWHIECSVM++ +LG LDIH GG DL FP
Sbjct: 172 KKRDPLDFALWKSAKPGEPYWKSPWGNGRPGWHIECSVMSTKLLGTTLDIHAGGEDLIFP 231
Query: 847 HHDNELAQAEGLPTHDQEGKELSKGLAK 874
HH+NE AQ+E L L G+ K
Sbjct: 232 HHENEKAQSEALTGKTFVKYWLHNGMIK 259
Score = 37.4 bits (85), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 437 ITFDILRRILSEYFNYNITYAMNITDIDDKIIKRA 471
+ FD LRR L EY Y + N TDIDDKII ++
Sbjct: 44 VVFDALRRYL-EYRGYRVIMVQNFTDIDDKIINKS 77
Score = 35.8 bits (81), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 118 VLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAF 162
V P + S+++PEI+ + I+ +IA AY +G VYF+V +F
Sbjct: 104 VRAPNFSPKTSDFVPEIINA-IQNLIAKNHAYVVDGDVYFSVRSF 147
>sp|A5N4M6|SYC_CLOK5 Cysteine--tRNA ligase OS=Clostridium kluyveri (strain ATCC 8527 /
DSM 555 / NCIMB 10680) GN=cysS PE=3 SV=1
Length = 465
Score = 122 bits (307), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 48/70 (68%), Positives = 56/70 (80%)
Query: 788 KRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPH 847
K++P DFA+WK K GEP W SPWG GRPGWHIECS MA +LG +DIH GG DLKFPH
Sbjct: 173 KKNPMDFAVWKSEKKGEPSWESPWGMGRPGWHIECSCMAYNILGETIDIHAGGSDLKFPH 232
Query: 848 HDNELAQAEG 857
H+NE+AQ+EG
Sbjct: 233 HENEIAQSEG 242
Score = 40.8 bits (94), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRA 471
++++ FD +RR EY Y + + N TDIDDK+IK+A
Sbjct: 40 ARTFVVFDTVRRYF-EYKGYKVNFVQNFTDIDDKMIKKA 77
Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 9/66 (13%)
Query: 122 TVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPNHYYAKLVPEAYGDT 181
TV R + YI +I+ +I+ +I G AY +G VYFN F++ Y KL + +
Sbjct: 108 TVNPRATLYISKII-EFIQDLIDKGYAYSVDGDVYFNAKKFNN-----YGKLSGQ---NI 158
Query: 182 KTLQEG 187
+ LQ G
Sbjct: 159 EQLQSG 164
>sp|B9DY88|SYC_CLOK1 Cysteine--tRNA ligase OS=Clostridium kluyveri (strain NBRC 12016)
GN=cysS PE=3 SV=1
Length = 465
Score = 122 bits (307), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 48/70 (68%), Positives = 56/70 (80%)
Query: 788 KRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPH 847
K++P DFA+WK K GEP W SPWG GRPGWHIECS MA +LG +DIH GG DLKFPH
Sbjct: 173 KKNPMDFAVWKSEKKGEPSWESPWGMGRPGWHIECSCMAYNILGETIDIHAGGSDLKFPH 232
Query: 848 HDNELAQAEG 857
H+NE+AQ+EG
Sbjct: 233 HENEIAQSEG 242
Score = 40.8 bits (94), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRA 471
++++ FD +RR EY Y + + N TDIDDK+IK+A
Sbjct: 40 ARTFVVFDTVRRYF-EYKGYKVNFVQNFTDIDDKMIKKA 77
Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 9/66 (13%)
Query: 122 TVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPNHYYAKLVPEAYGDT 181
TV R + YI +I+ +I+ +I G AY +G VYFN F++ Y KL + +
Sbjct: 108 TVNPRATLYISKII-EFIQDLIDKGYAYSVDGDVYFNAKKFNN-----YGKLSGQ---NI 158
Query: 182 KTLQEG 187
+ LQ G
Sbjct: 159 EQLQSG 164
>sp|Q0A7N3|SYC_ALHEH Cysteine--tRNA ligase OS=Alkalilimnicola ehrlichei (strain MLHE-1)
GN=cysS PE=3 SV=2
Length = 462
Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 50/74 (67%), Positives = 58/74 (78%)
Query: 788 KRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPH 847
KR P DFALWK ++ GEP W SPWGEGRPGWHIECS M++ VLG DIH GG+DLKFPH
Sbjct: 175 KRDPVDFALWKAARPGEPAWPSPWGEGRPGWHIECSAMSTQVLGDHFDIHGGGLDLKFPH 234
Query: 848 HDNELAQAEGLPTH 861
H+NE+AQ+E H
Sbjct: 235 HENEIAQSECATGH 248
Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 434 KSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRA 471
++ + FD++ R L + Y +T+ NITDIDDKII+RA
Sbjct: 42 RALVVFDMVARYL-RHLGYRVTFVRNITDIDDKIIRRA 78
>sp|Q5JD45|SYC_PYRKO Cysteine--tRNA ligase OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=cysS PE=3 SV=1
Length = 476
Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 49/75 (65%), Positives = 57/75 (76%)
Query: 788 KRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPH 847
K++P DFALWKK+K GEP W SPWGEGRPGWHIECS M++ LG DIH GG DL FPH
Sbjct: 175 KKNPEDFALWKKAKPGEPKWESPWGEGRPGWHIECSTMSTKYLGESFDIHGGGSDLIFPH 234
Query: 848 HDNELAQAEGLPTHD 862
H+NE+AQ E H+
Sbjct: 235 HENEIAQTEACTGHE 249
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 434 KSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQ 473
++YI FD++RR L E+ Y + MN TDIDDKIIKRA +
Sbjct: 43 RTYIAFDVIRRYL-EHKGYTVLMVMNFTDIDDKIIKRANE 81
Score = 37.0 bits (84), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 118 VLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAF 162
V P + RV+E+I +I+ +I K+ G AYE + VYF V F
Sbjct: 106 VKPADIYPRVTEHIQDII-DFIRKLQEKGYAYEGSDGVYFEVRKF 149
>sp|Q18CD5|SYC_CLOD6 Cysteine--tRNA ligase OS=Clostridium difficile (strain 630) GN=cysS
PE=3 SV=2
Length = 465
Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 52/84 (61%), Positives = 59/84 (70%), Gaps = 5/84 (5%)
Query: 787 EKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFP 846
+KR P DF LWK K GEP W SPWGEGRPGWHIECSVM+ LG +DIH GG DL FP
Sbjct: 172 QKRHPMDFVLWKAKKEGEPGWDSPWGEGRPGWHIECSVMSKRYLGETIDIHAGGQDLTFP 231
Query: 847 HHDNELAQAEGLPTHDQEGKELSK 870
HH+NE+AQ+E + GK SK
Sbjct: 232 HHENEIAQSEA-----RSGKTFSK 250
Score = 47.4 bits (111), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 434 KSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQ 473
+ +I FD LRR L EY Y++TY N TD+DDKII R+ +
Sbjct: 41 RPFIIFDTLRRYL-EYRGYDVTYVQNFTDVDDKIINRSHE 79
Score = 33.5 bits (75), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 13/87 (14%)
Query: 122 TVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPNHYYAKLVPEAYGDT 181
TV +V++ I +I+ +I+++ G AY NG VYF+ N F+ Y KL + D
Sbjct: 108 TVHPQVTDNIQQII-EFIKELEDKGYAYAVNGDVYFDTNKFEG-----YGKLSGQKQEDL 161
Query: 182 KTLQEGEVR-------GYPPWPARIEG 201
+ EV + W A+ EG
Sbjct: 162 EAGARIEVNDQKRHPMDFVLWKAKKEG 188
>sp|Q3IF51|SYC_PSEHT Cysteine--tRNA ligase OS=Pseudoalteromonas haloplanktis (strain TAC
125) GN=cysS PE=3 SV=1
Length = 459
Score = 122 bits (306), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 50/71 (70%), Positives = 57/71 (80%)
Query: 785 ASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLK 844
A +K P DF LWKK+KAGEP WSSPWGEGRPGWHIECS M+S LG DIH GG DL+
Sbjct: 172 AQDKDDPLDFVLWKKAKAGEPSWSSPWGEGRPGWHIECSAMSSKHLGEHFDIHGGGSDLQ 231
Query: 845 FPHHDNELAQA 855
FPHH+NE+AQ+
Sbjct: 232 FPHHENEIAQS 242
Score = 47.0 bits (110), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Query: 434 KSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQN 474
++++ FD++ R L + Y++ Y NITD+DDKIIKRA +N
Sbjct: 42 RTFVGFDVIVRYL-RHIGYDLKYVRNITDVDDKIIKRANEN 81
>sp|Q9WZH8|SYC_THEMA Cysteine--tRNA ligase OS=Thermotoga maritima (strain ATCC 43589 /
MSB8 / DSM 3109 / JCM 10099) GN=cysS PE=3 SV=1
Length = 460
Score = 122 bits (306), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 50/71 (70%), Positives = 57/71 (80%)
Query: 788 KRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPH 847
K+SP DF+LWKK+K GEP W SPWGEGRPGWHIEC+VM+ +LG DIH GG DL FPH
Sbjct: 173 KKSPLDFSLWKKAKPGEPCWKSPWGEGRPGWHIECTVMSVKILGESFDIHAGGEDLVFPH 232
Query: 848 HDNELAQAEGL 858
H+NE AQAE L
Sbjct: 233 HENEKAQAEAL 243
Score = 40.8 bits (94), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 437 ITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQ 473
+ FD+ RR L EY Y + N TDIDDKII +A Q
Sbjct: 44 LVFDVFRRYL-EYRGYRVIMVQNFTDIDDKIINKANQ 79
Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 118 VLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFD 163
+ P R ++++ +IV IEK++ G AY++ VYF+V F+
Sbjct: 104 IRPANFHPRTTDFVEDIV-EIIEKLVEKGFAYQTETGVYFDVRKFE 148
>sp|A4YIG5|SYC_METS5 Cysteine--tRNA ligase OS=Metallosphaera sedula (strain ATCC 51363 /
DSM 5348) GN=cysS PE=3 SV=1
Length = 465
Score = 122 bits (306), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 50/80 (62%), Positives = 59/80 (73%)
Query: 779 DLSSQEASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHT 838
D + EKR P DFALWK K GEP+W SPWG+GRPGWHIECS M++ LG ++DIH
Sbjct: 161 DQGEEIVKEKRHPYDFALWKAYKPGEPYWESPWGKGRPGWHIECSTMSTRYLGTKIDIHG 220
Query: 839 GGVDLKFPHHDNELAQAEGL 858
GG+DL FPHH+NE AQ E L
Sbjct: 221 GGMDLVFPHHENERAQTESL 240
Score = 47.0 bits (110), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 9/94 (9%)
Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQTSKIL 492
G++++ FD + R L YN+ NITDIDDKII +AR+ L + + +E + L
Sbjct: 40 GRTFVAFDAMSRYL-RVKGYNVVRVQNITDIDDKIINKARE--LGKSWNEVSEYYSKSYL 96
Query: 493 KDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQ 526
+ IG + K+K+ P T +K I+ VQ
Sbjct: 97 EHIGAL------KVKIDMHPKVTTHIKEIIDFVQ 124
Score = 37.0 bits (84), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 29/37 (78%), Gaps = 1/37 (2%)
Query: 126 RVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAF 162
+V+ +I EI+ +++++I +G AY +NGSVYF+V+ +
Sbjct: 111 KVTTHIKEII-DFVQRLIDSGHAYVANGSVYFDVDTY 146
>sp|Q9YBK6|SYC_AERPE Cysteine--tRNA ligase OS=Aeropyrum pernix (strain ATCC 700893 / DSM
11879 / JCM 9820 / NBRC 100138 / K1) GN=cysS PE=3 SV=2
Length = 472
Score = 122 bits (306), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 52/75 (69%), Positives = 59/75 (78%)
Query: 787 EKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFP 846
EK+SP DFALWK +K GEP W SPWG GRPGWHIECSVM+S LG ++DIH GGVDL FP
Sbjct: 172 EKKSPYDFALWKAAKPGEPSWESPWGRGRPGWHIECSVMSSRYLGSRIDIHGGGVDLVFP 231
Query: 847 HHDNELAQAEGLPTH 861
HH+NE AQ+E H
Sbjct: 232 HHENERAQSESYFGH 246
Score = 40.4 bits (93), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 434 KSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQ 473
+++ FD ++R L Y++ + NITDIDDKII RAR+
Sbjct: 42 RTFTVFDAIKRYL-RLRGYDVFHVQNITDIDDKIINRARE 80
>sp|C3LNF1|SYC_VIBCM Cysteine--tRNA ligase OS=Vibrio cholerae serotype O1 (strain M66-2)
GN=cysS PE=3 SV=1
Length = 459
Score = 122 bits (306), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/106 (52%), Positives = 68/106 (64%), Gaps = 14/106 (13%)
Query: 771 VAQAAKPGDLSSQEASE------------KRSPNDFALWKKSKAGEPWWSSPWGEGRPGW 818
V+Q ++ G LS Q+ + KRSP DF LWK SK GEP W SPWG GRPGW
Sbjct: 146 VSQYSEYGKLSKQDLDQLQAGARVDIEAAKRSPLDFVLWKMSKPGEPTWESPWGSGRPGW 205
Query: 819 HIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLPTHDQE 864
HIECS M S++LG DIH GG DL+FPHH+NE+AQ+ HD +
Sbjct: 206 HIECSAMNSSILGTHFDIHGGGSDLQFPHHENEIAQS--CCAHDTQ 249
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 409 ILNQCDRLRDEVLPNV---------GVRLEDI----EGKSYITFDILRRILSEYFNYNIT 455
I N R ++E P V GV + D+ G+++++FD++ R L Y Y++T
Sbjct: 4 IYNSLTRQKEEFKPIVAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVARYL-RYLGYDLT 62
Query: 456 YAMNITDIDDKIIKRARQN-----YLFEKHVQE 483
+ NITDIDDKIIKRA +N L E+ +QE
Sbjct: 63 FVRNITDIDDKIIKRAAENAETCESLTERLIQE 95
>sp|Q9KQZ9|SYC_VIBCH Cysteine--tRNA ligase OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=cysS PE=3 SV=1
Length = 459
Score = 122 bits (306), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/106 (52%), Positives = 68/106 (64%), Gaps = 14/106 (13%)
Query: 771 VAQAAKPGDLSSQEASE------------KRSPNDFALWKKSKAGEPWWSSPWGEGRPGW 818
V+Q ++ G LS Q+ + KRSP DF LWK SK GEP W SPWG GRPGW
Sbjct: 146 VSQYSEYGKLSKQDLDQLQAGARVDIEAAKRSPLDFVLWKMSKPGEPTWESPWGSGRPGW 205
Query: 819 HIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLPTHDQE 864
HIECS M S++LG DIH GG DL+FPHH+NE+AQ+ HD +
Sbjct: 206 HIECSAMNSSILGTHFDIHGGGSDLQFPHHENEIAQS--CCAHDTQ 249
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 409 ILNQCDRLRDEVLPNV---------GVRLEDI----EGKSYITFDILRRILSEYFNYNIT 455
I N R ++E P V GV + D+ G+++++FD++ R L Y Y++T
Sbjct: 4 IYNSLTRQKEEFKPIVAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVARYL-RYLGYDLT 62
Query: 456 YAMNITDIDDKIIKRARQN-----YLFEKHVQE 483
+ NITDIDDKIIKRA +N L E+ +QE
Sbjct: 63 FVRNITDIDDKIIKRAAENAETCESLTERLIQE 95
>sp|A5F763|SYC_VIBC3 Cysteine--tRNA ligase OS=Vibrio cholerae serotype O1 (strain ATCC
39541 / Ogawa 395 / O395) GN=cysS PE=3 SV=1
Length = 459
Score = 122 bits (306), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/106 (52%), Positives = 68/106 (64%), Gaps = 14/106 (13%)
Query: 771 VAQAAKPGDLSSQEASE------------KRSPNDFALWKKSKAGEPWWSSPWGEGRPGW 818
V+Q ++ G LS Q+ + KRSP DF LWK SK GEP W SPWG GRPGW
Sbjct: 146 VSQYSEYGKLSKQDLDQLQAGARVDIEAAKRSPLDFVLWKMSKPGEPTWESPWGSGRPGW 205
Query: 819 HIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLPTHDQE 864
HIECS M S++LG DIH GG DL+FPHH+NE+AQ+ HD +
Sbjct: 206 HIECSAMNSSILGTHFDIHGGGSDLQFPHHENEIAQS--CCAHDTQ 249
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 409 ILNQCDRLRDEVLPNV---------GVRLEDI----EGKSYITFDILRRILSEYFNYNIT 455
I N R ++E P V GV + D+ G+++++FD++ R L Y Y++T
Sbjct: 4 IYNSLTRQKEEFKPIVAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVARYL-RYLGYDLT 62
Query: 456 YAMNITDIDDKIIKRARQN-----YLFEKHVQE 483
+ NITDIDDKIIKRA +N L E+ +QE
Sbjct: 63 FVRNITDIDDKIIKRAAENAETCESLTERLIQE 95
>sp|A9BGT9|SYC_PETMO Cysteine--tRNA ligase OS=Petrotoga mobilis (strain DSM 10674 /
SJ95) GN=cysS PE=3 SV=1
Length = 469
Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 59/73 (80%), Gaps = 1/73 (1%)
Query: 784 EASE-KRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVD 842
E SE K++P DFALWK SK GEP+W SPWG+GRPGWHIECSVM+S +LG DIH GG D
Sbjct: 175 EVSEYKKNPLDFALWKASKEGEPFWESPWGKGRPGWHIECSVMSSEILGDTFDIHAGGND 234
Query: 843 LKFPHHDNELAQA 855
L FPHH+NE AQA
Sbjct: 235 LIFPHHENERAQA 247
Score = 42.4 bits (98), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 437 ITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYL 476
I FD RR L EY Y +T N TDIDDKII++A++ L
Sbjct: 50 IIFDAFRRFL-EYIGYKVTLVQNFTDIDDKIIEQAKKENL 88
>sp|B9MMM6|SYC_CALBD Cysteine--tRNA ligase OS=Caldicellulosiruptor bescii (strain ATCC
BAA-1888 / DSM 6725 / Z-1320) GN=cysS PE=3 SV=1
Length = 465
Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 50/70 (71%), Positives = 54/70 (77%)
Query: 788 KRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPH 847
K P DFALWK K GEP WSSPWGEGRPGWHIECSVMA LG +DIH GG DL FPH
Sbjct: 173 KEDPLDFALWKAKKEGEPAWSSPWGEGRPGWHIECSVMAMKYLGQTIDIHAGGQDLIFPH 232
Query: 848 HDNELAQAEG 857
H+NE+AQ+E
Sbjct: 233 HENEIAQSEA 242
Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 437 ITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQN-----YLFEKHVQE 483
I FD LRR EY Y + Y N TD++DK+I RA + L E+ +QE
Sbjct: 44 IVFDTLRRYF-EYKGYEVIYIQNFTDVEDKMINRANKEGITVFELAERFIQE 94
>sp|Q8SRE0|SYC_ENCCU Cysteine--tRNA ligase OS=Encephalitozoon cuniculi (strain GB-M1)
GN=ECU08_0490 PE=1 SV=1
Length = 480
Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 50/88 (56%), Positives = 62/88 (70%)
Query: 770 PVAQAAKPGDLSSQEASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAV 829
P+ ++ + E +KRSP DF LWK+SK EP + S WG GRPGWHIECSVM+S +
Sbjct: 159 PLFKSKDGINSEGDENKDKRSPCDFVLWKRSKENEPRYESKWGHGRPGWHIECSVMSSDI 218
Query: 830 LGPQLDIHTGGVDLKFPHHDNELAQAEG 857
LG LDIH GGVDL FPHH+NE+AQ +
Sbjct: 219 LGEDLDIHAGGVDLAFPHHENEIAQCQA 246
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 33/41 (80%)
Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQ 473
++Y+ FD++RR+LS+Y YN+ + MNITDIDDKII RA +
Sbjct: 44 ARTYVMFDVIRRVLSDYLKYNVRFVMNITDIDDKIIARANE 84
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 38/51 (74%), Gaps = 1/51 (1%)
Query: 118 VLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPNH 168
V P+ +T V+ Y+ +IV +IEK+ ANGLAYES GSVYF++N++ + ++
Sbjct: 109 VRSPSFVTFVTSYVDKIV-KFIEKLEANGLAYESRGSVYFDLNSYQQRYSY 158
Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 74/150 (49%), Gaps = 19/150 (12%)
Query: 283 SFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRG-TPNQLL 341
+FE AD E+ + VHAAL DN+DT + + I + I+ N ++ +P+ +L
Sbjct: 338 AFETLENADREVLRELGNVQEAVHAALLDNVDTPAVMKRIVEMINFTNARIKTISPSTVL 397
Query: 342 LRDIGAYVTKILTVFGCIGDVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEA 401
+ + Y+ +I V G L + + E+L+ +LS FR++IR A
Sbjct: 398 V--VKDYIKEITDVLG-----------LSEEERQESPGEDLIAQ---LLSNFRESIREMA 441
Query: 402 RLIK-STEILNQCDRLRDEVLPNVGVRLED 430
R + ++ L +CD +R E + + G +ED
Sbjct: 442 RRKEPYSKFLEKCDWIR-ESIKDYGYIIED 470
>sp|Q0TMM4|SYC_CLOP1 Cysteine--tRNA ligase OS=Clostridium perfringens (strain ATCC 13124
/ NCTC 8237 / Type A) GN=cysS PE=3 SV=1
Length = 466
Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 48/71 (67%), Positives = 56/71 (78%)
Query: 788 KRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPH 847
K+ P DFA+WK K GEP W+SPWG GRPGWHIECS MA +LG +DIH GG DLKFPH
Sbjct: 174 KKDPMDFAIWKAQKPGEPAWNSPWGMGRPGWHIECSCMAKKLLGETIDIHAGGSDLKFPH 233
Query: 848 HDNELAQAEGL 858
H+NE+AQ+E L
Sbjct: 234 HENEIAQSEAL 244
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQ 473
G+++I FD +RR EY + + + N TDIDDK+IK+A +
Sbjct: 41 GRTFIVFDTIRRYF-EYRGFKVDFVQNFTDIDDKMIKKANE 80
Score = 36.6 bits (83), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 122 TVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPNHYYAKL 173
TV R +E+I EI+ +++ ++ G AYE +G VYF+ F+ Y KL
Sbjct: 109 TVNPRATEFIGEII-KFVKGLVDKGYAYEVDGDVYFSTKKFEG-----YGKL 154
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.130 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 346,146,957
Number of Sequences: 539616
Number of extensions: 15172587
Number of successful extensions: 97462
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1267
Number of HSP's successfully gapped in prelim test: 1698
Number of HSP's that attempted gapping in prelim test: 71411
Number of HSP's gapped (non-prelim): 17344
length of query: 948
length of database: 191,569,459
effective HSP length: 127
effective length of query: 821
effective length of database: 123,038,227
effective search space: 101014384367
effective search space used: 101014384367
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 66 (30.0 bits)