Query psy6851
Match_columns 948
No_of_seqs 608 out of 3066
Neff 4.8
Searched_HMMs 46136
Date Fri Aug 16 20:01:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6851.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6851hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2007|consensus 100.0 7E-101 2E-105 851.9 15.2 298 405-926 33-390 (586)
2 COG0215 CysS Cysteinyl-tRNA sy 100.0 2.9E-90 6.2E-95 775.9 19.0 248 406-875 1-276 (464)
3 PTZ00399 cysteinyl-tRNA-synthe 100.0 1.5E-81 3.3E-86 741.1 19.0 284 405-900 38-381 (651)
4 PF01406 tRNA-synt_1e: tRNA sy 100.0 1.7E-82 3.6E-87 684.4 7.3 229 424-875 14-260 (300)
5 PLN02946 cysteine-tRNA ligase 100.0 3.5E-79 7.5E-84 706.0 14.6 249 404-875 57-331 (557)
6 COG0215 CysS Cysteinyl-tRNA sy 100.0 3.8E-77 8.2E-82 670.0 24.3 317 93-438 78-462 (464)
7 PRK14535 cysS cysteinyl-tRNA s 100.0 2.9E-77 6.3E-82 694.6 17.6 248 405-875 226-516 (699)
8 KOG2007|consensus 100.0 1E-75 2.2E-80 651.3 21.5 318 95-434 119-517 (586)
9 TIGR03447 mycothiol_MshC cyste 100.0 6.9E-76 1.5E-80 659.0 14.0 251 404-875 15-296 (411)
10 PRK14536 cysS cysteinyl-tRNA s 100.0 7.5E-75 1.6E-79 663.6 15.8 247 406-875 2-287 (490)
11 PRK14534 cysS cysteinyl-tRNA s 100.0 3E-73 6.4E-78 648.1 13.3 248 405-875 1-287 (481)
12 PRK12418 cysteinyl-tRNA synthe 100.0 9.8E-73 2.1E-77 630.3 13.4 231 424-875 15-269 (384)
13 PLN02946 cysteine-tRNA ligase 100.0 4.8E-68 1E-72 613.6 22.8 329 89-440 132-545 (557)
14 TIGR00435 cysS cysteinyl-tRNA 100.0 2.3E-68 5.1E-73 610.1 18.7 246 407-875 1-273 (465)
15 PRK00260 cysS cysteinyl-tRNA s 100.0 2.5E-68 5.5E-73 609.7 14.9 248 405-875 1-274 (463)
16 PTZ00399 cysteinyl-tRNA-synthe 100.0 6.5E-67 1.4E-71 617.0 26.5 332 90-439 114-547 (651)
17 PRK14535 cysS cysteinyl-tRNA s 100.0 2E-65 4.2E-70 595.9 25.0 318 88-438 299-697 (699)
18 PRK14536 cysS cysteinyl-tRNA s 100.0 5E-63 1.1E-67 566.3 25.1 311 93-438 89-488 (490)
19 PRK14534 cysS cysteinyl-tRNA s 100.0 2.1E-62 4.5E-67 559.3 24.3 313 90-438 84-479 (481)
20 PRK00260 cysS cysteinyl-tRNA s 100.0 7.6E-61 1.7E-65 548.2 25.1 317 93-438 79-461 (463)
21 PRK12418 cysteinyl-tRNA synthe 100.0 2E-61 4.3E-66 539.6 17.4 252 91-358 63-382 (384)
22 TIGR03447 mycothiol_MshC cyste 100.0 2.3E-60 4.9E-65 533.9 17.5 237 87-334 86-390 (411)
23 TIGR00435 cysS cysteinyl-tRNA 100.0 2.2E-59 4.7E-64 536.3 25.5 316 92-438 76-464 (465)
24 PF01406 tRNA-synt_1e: tRNA sy 100.0 8.3E-59 1.8E-63 500.8 8.1 180 92-282 63-296 (300)
25 cd00672 CysRS_core catalytic c 100.0 7.8E-38 1.7E-42 326.3 9.1 58 818-875 113-182 (213)
26 cd00668 Ile_Leu_Val_MetRS_core 100.0 1.3E-29 2.7E-34 276.7 3.3 165 626-876 79-282 (312)
27 PRK11893 methionyl-tRNA synthe 99.9 3.2E-27 7E-32 272.7 6.1 205 627-875 68-307 (511)
28 PRK11893 methionyl-tRNA synthe 99.9 3E-21 6.4E-26 223.3 17.9 230 93-336 58-428 (511)
29 cd00814 MetRS_core catalytic c 99.8 4.6E-21 1E-25 210.7 2.3 198 627-876 67-289 (319)
30 cd00672 CysRS_core catalytic c 99.8 8.9E-20 1.9E-24 191.0 4.7 112 82-277 65-213 (213)
31 cd00668 Ile_Leu_Val_MetRS_core 99.7 5.9E-19 1.3E-23 193.1 5.4 142 99-265 76-289 (312)
32 cd00812 LeuRS_core catalytic c 99.7 1.3E-18 2.9E-23 191.1 0.6 59 626-685 66-129 (314)
33 cd00814 MetRS_core catalytic c 99.6 2.8E-15 6.1E-20 165.1 5.8 174 90-265 54-296 (319)
34 TIGR00398 metG methionyl-tRNA 99.5 2.9E-13 6.3E-18 158.4 19.8 238 95-336 58-456 (530)
35 PRK01611 argS arginyl-tRNA syn 99.5 2.9E-14 6.3E-19 166.4 4.8 133 627-875 178-330 (507)
36 PLN02224 methionine-tRNA ligas 99.5 1E-12 2.2E-17 156.5 17.8 250 83-336 116-495 (616)
37 PRK00133 metG methionyl-tRNA s 99.4 3.2E-12 6.8E-17 154.1 20.7 243 90-336 56-455 (673)
38 PRK12268 methionyl-tRNA synthe 99.4 3.4E-12 7.4E-17 150.3 19.3 238 93-335 61-461 (556)
39 cd00818 IleRS_core catalytic c 99.4 1.1E-14 2.5E-19 161.9 -1.5 56 626-681 84-143 (338)
40 cd07963 Anticodon_Ia_Cys Antic 99.4 2E-12 4.4E-17 128.8 12.4 124 299-438 32-155 (156)
41 PRK12267 methionyl-tRNA synthe 99.4 1.5E-11 3.2E-16 147.6 19.9 241 92-336 60-428 (648)
42 cd00671 ArgRS_core catalytic c 99.3 9.8E-13 2.1E-17 137.4 5.7 58 627-685 66-124 (212)
43 PLN02224 methionine-tRNA ligas 99.3 1.8E-12 3.9E-17 154.4 7.6 59 627-686 136-197 (616)
44 cd00812 LeuRS_core catalytic c 99.3 3.1E-12 6.7E-17 141.1 5.5 152 93-265 57-291 (314)
45 PRK01611 argS arginyl-tRNA syn 99.3 3.7E-11 8E-16 140.6 13.7 233 99-360 174-503 (507)
46 cd00817 ValRS_core catalytic c 99.3 1.9E-12 4.2E-17 146.4 2.8 62 625-686 82-147 (382)
47 PRK04156 gltX glutamyl-tRNA sy 99.2 2.8E-12 6.1E-17 150.7 1.9 76 787-873 251-344 (567)
48 TIGR00398 metG methionyl-tRNA 99.2 1.8E-11 3.9E-16 143.5 5.7 59 627-686 66-127 (530)
49 cd00802 class_I_aaRS_core cata 99.2 2.8E-11 6.1E-16 118.5 5.3 54 818-872 78-143 (143)
50 PRK12268 methionyl-tRNA synthe 99.1 3.5E-11 7.6E-16 141.8 6.0 59 627-686 71-132 (556)
51 TIGR00395 leuS_arch leucyl-tRN 99.1 3E-10 6.4E-15 141.6 10.4 114 221-335 575-741 (938)
52 COG0143 MetG Methionyl-tRNA sy 99.0 2.5E-08 5.4E-13 117.8 22.1 237 90-336 59-463 (558)
53 PRK00133 metG methionyl-tRNA s 98.9 6.8E-10 1.5E-14 134.1 5.4 59 627-686 69-130 (673)
54 PLN02610 probable methionyl-tR 98.9 5.6E-08 1.2E-12 119.6 18.9 72 87-160 69-144 (801)
55 PF09190 DALR_2: DALR domain; 98.9 4.3E-09 9.4E-14 90.5 6.1 57 304-361 1-57 (63)
56 smart00840 DALR_2 This DALR do 98.8 1E-08 2.2E-13 85.3 6.1 55 304-358 1-55 (56)
57 PRK12267 methionyl-tRNA synthe 98.8 6.2E-09 1.3E-13 125.4 6.0 59 627-686 71-132 (648)
58 PRK12300 leuS leucyl-tRNA synt 98.7 2.1E-08 4.5E-13 124.9 9.8 115 221-336 532-696 (897)
59 cd00818 IleRS_core catalytic c 98.7 5.6E-09 1.2E-13 116.6 3.9 60 100-160 82-146 (338)
60 PRK04156 gltX glutamyl-tRNA sy 98.6 2.2E-07 4.7E-12 110.2 11.3 129 107-254 154-343 (567)
61 cd00817 ValRS_core catalytic c 98.5 9.2E-08 2E-12 108.7 5.1 45 221-265 298-359 (382)
62 KOG0436|consensus 98.5 7E-06 1.5E-10 92.9 18.1 258 92-360 95-510 (578)
63 PRK13208 valS valyl-tRNA synth 98.4 9.3E-07 2E-11 109.2 10.0 112 221-334 488-656 (800)
64 PLN02843 isoleucyl-tRNA synthe 98.3 1.9E-06 4E-11 108.5 10.0 115 220-335 565-747 (974)
65 PRK05743 ileS isoleucyl-tRNA s 98.2 2.3E-06 5E-11 107.1 8.1 114 220-335 546-720 (912)
66 TIGR00456 argS arginyl-tRNA sy 98.2 4.9E-05 1.1E-09 90.9 18.8 237 101-360 231-562 (566)
67 PRK00390 leuS leucyl-tRNA synt 98.2 3.1E-06 6.8E-11 104.7 8.6 90 238-333 564-687 (805)
68 TIGR00422 valS valyl-tRNA synt 98.1 5.9E-06 1.3E-10 102.9 8.3 113 221-334 480-651 (861)
69 PRK05729 valS valyl-tRNA synth 98.1 7.5E-06 1.6E-10 102.2 8.5 113 221-335 475-648 (874)
70 PRK13804 ileS isoleucyl-tRNA s 98.1 1.4E-05 3E-10 100.7 10.7 113 221-335 585-758 (961)
71 TIGR00395 leuS_arch leucyl-tRN 98.1 5.7E-06 1.2E-10 104.0 7.2 43 833-875 573-628 (938)
72 cd00671 ArgRS_core catalytic c 98.0 8.4E-06 1.8E-10 85.6 6.6 61 101-163 64-126 (212)
73 cd07955 Anticodon_Ia_Cys_like 98.0 2.1E-05 4.6E-10 71.4 7.8 54 299-358 27-81 (81)
74 cd09287 GluRS_non_core catalyt 98.0 1.7E-06 3.7E-11 93.0 0.4 43 631-674 54-97 (240)
75 TIGR00392 ileS isoleucyl-tRNA 97.9 2.2E-05 4.7E-10 98.0 8.3 114 221-335 566-742 (861)
76 PF09334 tRNA-synt_1g: tRNA sy 97.9 9.8E-06 2.1E-10 92.8 4.5 71 88-160 51-125 (391)
77 TIGR00396 leuS_bact leucyl-tRN 97.8 4.4E-05 9.5E-10 95.1 8.4 83 249-332 604-725 (842)
78 PRK14900 valS valyl-tRNA synth 97.7 6.9E-05 1.5E-09 95.4 9.2 95 240-335 528-667 (1052)
79 PRK06039 ileS isoleucyl-tRNA s 97.7 6.4E-05 1.4E-09 95.1 8.9 96 238-334 580-722 (975)
80 PLN02959 aminoacyl-tRNA ligase 97.7 5.2E-05 1.1E-09 96.7 8.1 107 220-327 672-832 (1084)
81 PLN02943 aminoacyl-tRNA ligase 97.7 4.6E-05 1E-09 96.1 7.4 94 241-335 574-722 (958)
82 PRK12451 arginyl-tRNA syntheta 97.6 0.0012 2.7E-08 79.1 16.9 230 101-360 230-558 (562)
83 PRK12300 leuS leucyl-tRNA synt 97.5 0.00012 2.6E-09 92.0 7.0 43 833-875 530-585 (897)
84 COG0495 LeuS Leucyl-tRNA synth 97.5 0.00025 5.4E-09 87.5 9.1 115 221-335 528-697 (814)
85 PLN02882 aminoacyl-tRNA ligase 97.5 0.00038 8.3E-09 89.4 10.4 96 238-335 602-752 (1159)
86 TIGR00467 lysS_arch lysyl-tRNA 97.5 8E-05 1.7E-09 88.1 3.9 83 188-281 210-317 (515)
87 PTZ00419 valyl-tRNA synthetase 97.2 0.00096 2.1E-08 84.9 9.0 40 294-334 714-755 (995)
88 COG0143 MetG Methionyl-tRNA sy 97.2 0.00048 1E-08 82.2 5.8 60 626-686 71-133 (558)
89 PLN02843 isoleucyl-tRNA synthe 97.0 0.0013 2.7E-08 83.6 7.5 45 831-875 562-619 (974)
90 PTZ00427 isoleucine-tRNA ligas 96.9 0.0019 4.1E-08 83.4 8.7 40 294-334 816-856 (1205)
91 COG0060 IleS Isoleucyl-tRNA sy 96.9 0.0024 5.3E-08 79.9 8.3 39 295-334 689-729 (933)
92 PF09334 tRNA-synt_1g: tRNA sy 96.8 0.00077 1.7E-08 77.5 3.4 59 627-686 66-127 (391)
93 PLN02563 aminoacyl-tRNA ligase 96.6 0.0038 8.1E-08 79.2 8.0 37 294-331 806-842 (963)
94 COG0525 ValS Valyl-tRNA synthe 96.6 0.0077 1.7E-07 74.9 10.3 115 219-334 478-651 (877)
95 PRK00750 lysK lysyl-tRNA synth 96.6 0.0016 3.5E-08 77.3 3.9 27 238-264 268-295 (510)
96 PRK00390 leuS leucyl-tRNA synt 96.5 0.002 4.3E-08 80.4 4.3 59 627-686 99-162 (805)
97 TIGR00422 valS valyl-tRNA synt 96.4 0.0042 9E-08 78.1 6.5 43 833-875 478-533 (861)
98 cd00674 LysRS_core_class_I cat 96.4 0.0029 6.3E-08 72.0 4.5 66 188-264 212-290 (353)
99 PLN02959 aminoacyl-tRNA ligase 96.4 0.0018 4E-08 83.0 3.1 44 832-875 670-726 (1084)
100 TIGR00396 leuS_bact leucyl-tRN 96.4 0.0035 7.6E-08 78.6 5.2 42 432-474 48-89 (842)
101 PRK05729 valS valyl-tRNA synth 96.3 0.007 1.5E-07 76.2 7.0 43 833-875 473-528 (874)
102 PRK05743 ileS isoleucyl-tRNA s 96.2 0.0084 1.8E-07 75.9 7.6 44 832-875 544-600 (912)
103 PLN02610 probable methionyl-tR 96.2 0.0052 1.1E-07 76.6 5.7 60 626-686 84-146 (801)
104 KOG0437|consensus 96.1 0.016 3.5E-07 70.2 8.3 42 221-262 665-723 (1080)
105 PRK13208 valS valyl-tRNA synth 95.9 0.0027 5.9E-08 79.1 1.3 43 833-875 486-541 (800)
106 PLN02381 valyl-tRNA synthetase 95.5 0.026 5.7E-07 72.6 7.6 39 295-334 780-820 (1066)
107 PRK13804 ileS isoleucyl-tRNA s 94.9 0.05 1.1E-06 69.5 7.6 42 832-875 582-638 (961)
108 PF00133 tRNA-synt_1: tRNA syn 94.9 0.0077 1.7E-07 72.9 0.2 44 221-264 516-576 (601)
109 PF00133 tRNA-synt_1: tRNA syn 94.7 0.013 2.8E-07 71.0 1.5 45 832-876 513-570 (601)
110 KOG0436|consensus 94.3 0.44 9.6E-06 55.4 12.3 61 626-687 105-168 (578)
111 cd00802 class_I_aaRS_core cata 94.0 0.0066 1.4E-07 59.7 -2.4 42 212-254 78-143 (143)
112 PRK06039 ileS isoleucyl-tRNA s 94.0 0.085 1.8E-06 67.5 6.7 37 123-160 150-186 (975)
113 COG0018 ArgS Arginyl-tRNA synt 93.7 1 2.2E-05 54.9 14.5 67 293-360 495-573 (577)
114 cd00674 LysRS_core_class_I cat 93.5 0.047 1E-06 62.4 2.8 46 419-465 20-69 (353)
115 TIGR00392 ileS isoleucyl-tRNA 93.3 0.037 7.9E-07 69.8 1.6 38 122-160 144-181 (861)
116 PRK14900 valS valyl-tRNA synth 93.1 0.11 2.4E-06 67.0 5.5 43 833-875 491-546 (1052)
117 PLN02286 arginine-tRNA ligase 93.1 1.1 2.5E-05 54.4 13.6 67 293-360 497-572 (576)
118 KOG0432|consensus 92.4 0.5 1.1E-05 59.0 9.4 39 295-334 719-759 (995)
119 cd09287 GluRS_non_core catalyt 92.3 0.18 3.8E-06 55.0 4.9 41 108-150 55-97 (240)
120 COG0495 LeuS Leucyl-tRNA synth 91.9 0.25 5.4E-06 61.9 6.1 43 833-875 526-587 (814)
121 PLN02882 aminoacyl-tRNA ligase 91.6 0.27 5.9E-06 64.1 6.4 59 102-161 121-184 (1159)
122 TIGR00463 gltX_arch glutamyl-t 91.4 0.16 3.6E-06 61.2 3.8 45 629-674 142-187 (560)
123 TIGR00463 gltX_arch glutamyl-t 90.8 0.3 6.5E-06 59.1 5.2 44 105-150 142-187 (560)
124 TIGR00467 lysS_arch lysyl-tRNA 90.5 0.18 3.9E-06 60.5 2.9 44 420-464 20-67 (515)
125 PTZ00427 isoleucine-tRNA ligas 90.1 0.5 1.1E-05 61.9 6.7 43 833-875 673-728 (1205)
126 COG1384 LysS Lysyl-tRNA synthe 89.8 0.19 4.1E-06 59.6 2.4 72 186-265 212-293 (521)
127 PLN02563 aminoacyl-tRNA ligase 88.8 0.36 7.8E-06 61.8 4.0 59 627-685 178-240 (963)
128 COG0060 IleS Isoleucyl-tRNA sy 88.3 0.65 1.4E-05 59.0 5.6 40 122-162 156-195 (933)
129 KOG0433|consensus 88.1 2.6 5.6E-05 52.2 10.2 50 107-159 144-196 (937)
130 cd07958 Anticodon_Ia_Leu_BEm A 87.5 3 6.5E-05 38.6 8.3 45 291-336 40-84 (117)
131 cd07957 Anticodon_Ia_Met Antic 85.4 3.7 8.1E-05 38.7 7.9 45 291-336 38-82 (129)
132 PRK00750 lysK lysyl-tRNA synth 85.3 0.51 1.1E-05 56.5 2.4 49 825-875 228-288 (510)
133 KOG0437|consensus 85.0 0.28 6.1E-06 60.1 0.1 43 833-875 663-718 (1080)
134 KOG0435|consensus 83.2 3.1 6.6E-05 51.2 7.5 87 247-333 615-743 (876)
135 cd07375 Anticodon_Ia_like Anti 81.6 4.6 9.9E-05 36.9 6.6 44 291-335 41-84 (117)
136 TIGR00456 argS arginyl-tRNA sy 81.2 3.4 7.4E-05 50.2 7.2 59 625-685 231-292 (566)
137 COG0525 ValS Valyl-tRNA synthe 80.6 3 6.5E-05 52.9 6.5 62 811-875 459-533 (877)
138 KOG0432|consensus 80.3 0.8 1.7E-05 57.3 1.4 56 408-468 213-270 (995)
139 PLN02381 valyl-tRNA synthetase 79.6 2.2 4.8E-05 55.5 5.1 60 626-685 211-274 (1066)
140 PRK12451 arginyl-tRNA syntheta 75.9 8.8 0.00019 46.8 8.4 60 625-685 230-290 (562)
141 cd07959 Anticodon_Ia_Leu_AEc A 75.4 12 0.00026 34.9 7.5 45 290-335 36-81 (117)
142 KOG0433|consensus 71.3 6.8 0.00015 48.7 5.9 13 863-875 609-621 (937)
143 KOG1147|consensus 71.1 3.9 8.4E-05 49.2 3.7 48 628-676 248-296 (712)
144 PF01921 tRNA-synt_1f: tRNA sy 67.7 2.8 6E-05 48.4 1.6 26 239-264 271-297 (360)
145 PLN02943 aminoacyl-tRNA ligase 66.8 7 0.00015 50.5 5.1 60 626-685 170-233 (958)
146 cd07962 Anticodon_Ia_Val Antic 66.6 24 0.00051 34.4 7.7 45 290-335 43-89 (135)
147 PTZ00419 valyl-tRNA synthetase 65.0 7.2 0.00016 50.6 4.7 60 626-685 143-206 (995)
148 PF00750 tRNA-synt_1d: tRNA sy 64.4 14 0.00031 42.3 6.5 61 624-685 139-203 (354)
149 PF05746 DALR_1: DALR anticodo 63.9 19 0.00041 34.0 6.2 71 289-360 33-115 (119)
150 PLN02286 arginine-tRNA ligase 62.4 30 0.00065 42.5 9.1 59 625-685 235-294 (576)
151 PRK12556 tryptophanyl-tRNA syn 62.4 4.9 0.00011 45.9 2.3 52 823-875 139-210 (332)
152 KOG1147|consensus 61.2 11 0.00024 45.5 4.9 48 103-152 247-296 (712)
153 PRK05912 tyrosyl-tRNA syntheta 58.2 3.2 7E-05 48.6 -0.0 43 832-875 187-240 (408)
154 TIGR00233 trpS tryptophanyl-tR 57.0 6.2 0.00013 45.0 1.9 66 823-889 129-217 (328)
155 COG0018 ArgS Arginyl-tRNA synt 53.4 41 0.00089 41.4 8.1 63 622-685 232-297 (577)
156 TIGR00440 glnS glutaminyl-tRNA 51.7 14 0.00031 44.8 3.8 48 627-674 47-95 (522)
157 PTZ00126 tyrosyl-tRNA syntheta 51.4 6.9 0.00015 45.6 1.2 52 823-875 200-265 (383)
158 cd00805 TyrRS_core catalytic c 50.9 4.7 0.0001 44.5 -0.3 41 835-876 153-204 (269)
159 PRK05347 glutaminyl-tRNA synth 50.4 15 0.00033 44.8 3.9 53 619-674 71-124 (554)
160 PLN03233 putative glutamate-tR 50.3 14 0.00031 44.8 3.5 52 619-674 53-105 (523)
161 PRK14703 glutaminyl-tRNA synth 49.9 15 0.00033 46.5 3.8 53 619-674 73-126 (771)
162 PRK12284 tryptophanyl-tRNA syn 49.4 7.7 0.00017 45.9 1.1 52 823-875 138-210 (431)
163 smart00836 DALR_1 DALR anticod 48.9 1E+02 0.0022 29.3 8.6 70 290-360 37-118 (122)
164 cd07956 Anticodon_Ia_Arg Antic 47.9 92 0.002 31.3 8.4 70 290-360 72-152 (156)
165 PF01927 Mut7-C: Mut7-C RNAse 47.7 19 0.00042 36.3 3.6 31 442-475 12-42 (147)
166 cd00395 Tyr_Trp_RS_core cataly 47.7 5.8 0.00013 44.0 -0.2 66 833-899 153-236 (273)
167 TIGR03838 queuosine_YadB gluta 46.9 20 0.00044 40.0 3.9 47 628-674 48-95 (272)
168 PRK05347 glutaminyl-tRNA synth 45.1 30 0.00066 42.3 5.2 44 106-150 79-124 (554)
169 TIGR00440 glnS glutaminyl-tRNA 45.0 31 0.00067 42.0 5.2 43 107-150 51-95 (522)
170 PF00750 tRNA-synt_1d: tRNA sy 44.7 66 0.0014 37.0 7.7 31 132-163 175-205 (354)
171 PTZ00437 glutaminyl-tRNA synth 44.6 19 0.00041 44.1 3.4 47 627-674 98-145 (574)
172 PF08264 Anticodon_1: Anticodo 44.3 62 0.0013 31.7 6.4 41 294-335 4-46 (153)
173 PLN02907 glutamate-tRNA ligase 43.8 20 0.00044 45.1 3.6 52 619-674 255-307 (722)
174 PTZ00402 glutamyl-tRNA synthet 43.3 24 0.00052 43.5 4.0 52 619-673 94-146 (601)
175 PLN03233 putative glutamate-tR 43.2 34 0.00074 41.6 5.2 42 107-150 62-105 (523)
176 PTZ00437 glutaminyl-tRNA synth 42.3 33 0.00072 42.1 4.9 45 104-150 99-145 (574)
177 PF00579 tRNA-synt_1b: tRNA sy 41.0 15 0.00033 40.7 1.7 12 863-874 193-205 (292)
178 PRK14703 glutaminyl-tRNA synth 39.9 35 0.00077 43.4 4.8 44 106-150 81-126 (771)
179 cd07960 Anticodon_Ia_Ile_BEm A 39.3 1.5E+02 0.0032 30.3 8.5 45 290-335 45-91 (180)
180 PRK12558 glutamyl-tRNA synthet 38.9 23 0.0005 42.2 2.9 47 627-674 49-96 (445)
181 PLN02907 glutamate-tRNA ligase 38.8 41 0.00089 42.5 5.2 46 103-150 260-307 (722)
182 PLN02859 glutamine-tRNA ligase 36.6 46 0.001 42.3 5.1 46 103-150 311-358 (788)
183 KOG1247|consensus 36.3 97 0.0021 37.0 7.2 45 291-336 428-472 (567)
184 PRK12282 tryptophanyl-tRNA syn 35.7 17 0.00037 41.6 1.1 67 824-891 133-222 (333)
185 PF01921 tRNA-synt_1f: tRNA sy 35.1 15 0.00033 42.6 0.6 71 802-875 205-290 (360)
186 PRK13354 tyrosyl-tRNA syntheta 34.7 12 0.00026 44.0 -0.2 43 832-875 185-238 (410)
187 PTZ00402 glutamyl-tRNA synthet 34.1 57 0.0012 40.4 5.2 44 106-150 102-147 (601)
188 PLN02859 glutamine-tRNA ligase 34.0 34 0.00074 43.5 3.4 52 619-674 306-358 (788)
189 PF00749 tRNA-synt_1c: tRNA sy 33.2 39 0.00084 38.4 3.4 47 628-674 49-96 (314)
190 cd00807 GlnRS_core catalytic c 32.6 45 0.00098 36.7 3.7 46 628-674 49-95 (238)
191 COG0008 GlnS Glutamyl- and glu 32.4 37 0.00081 40.8 3.3 49 626-674 55-104 (472)
192 TIGR03838 queuosine_YadB gluta 32.3 71 0.0015 35.8 5.2 43 107-150 51-95 (272)
193 KOG0434|consensus 32.2 24 0.00052 44.0 1.6 42 816-875 566-609 (1070)
194 TIGR03272 methan_mark_6 putati 32.0 21 0.00045 36.0 0.9 24 190-214 63-87 (132)
195 PF00579 tRNA-synt_1b: tRNA sy 31.8 76 0.0017 35.2 5.4 15 245-259 193-209 (292)
196 PRK12556 tryptophanyl-tRNA syn 30.5 12 0.00026 42.8 -1.1 16 245-260 198-213 (332)
197 PRK05710 glutamyl-Q tRNA(Asp) 30.2 51 0.0011 37.4 3.7 48 627-674 52-100 (299)
198 COG0180 TrpS Tryptophanyl-tRNA 29.9 27 0.00059 39.9 1.5 36 628-663 61-96 (314)
199 COG0008 GlnS Glutamyl- and glu 28.4 78 0.0017 38.2 5.0 43 107-150 60-104 (472)
200 PF03546 Treacle: Treacher Col 27.3 62 0.0013 39.1 3.8 22 749-770 220-243 (519)
201 KOG1148|consensus 26.9 95 0.0021 38.4 5.3 49 100-150 292-342 (764)
202 PRK12284 tryptophanyl-tRNA syn 26.7 13 0.00028 44.1 -1.8 16 245-260 198-213 (431)
203 PRK12558 glutamyl-tRNA synthet 26.6 79 0.0017 37.9 4.6 43 106-150 52-96 (445)
204 cd00808 GluRS_core catalytic c 26.6 41 0.00089 37.0 2.1 58 812-879 100-175 (239)
205 TIGR00464 gltX_bact glutamyl-t 26.0 67 0.0014 38.6 3.9 48 627-674 48-96 (470)
206 PRK08560 tyrosyl-tRNA syntheta 24.6 40 0.00087 38.5 1.6 67 822-889 157-239 (329)
207 PRK12410 glutamylglutaminyl-tR 24.2 71 0.0015 38.2 3.6 47 627-674 46-93 (433)
208 PF09875 DUF2102: Uncharacteri 23.8 38 0.00081 33.0 1.0 24 190-214 64-88 (104)
209 PRK12283 tryptophanyl-tRNA syn 23.8 38 0.00082 40.0 1.3 13 863-875 260-272 (398)
210 cd00807 GlnRS_core catalytic c 23.5 1.2E+02 0.0025 33.6 4.8 43 106-150 51-95 (238)
211 PF00749 tRNA-synt_1c: tRNA sy 23.4 1.2E+02 0.0026 34.5 5.1 43 107-150 52-96 (314)
212 PRK12283 tryptophanyl-tRNA syn 22.8 18 0.00038 42.6 -1.6 16 245-260 260-275 (398)
213 PRK14895 gltX glutamyl-tRNA sy 22.7 81 0.0018 38.5 3.8 48 627-674 51-99 (513)
214 PLN02886 aminoacyl-tRNA ligase 22.0 40 0.00087 39.6 1.0 32 823-855 174-207 (389)
215 PRK13354 tyrosyl-tRNA syntheta 21.2 22 0.00047 41.9 -1.3 19 244-262 225-243 (410)
216 cd00806 TrpRS_core catalytic c 20.3 55 0.0012 36.5 1.7 66 823-889 127-216 (280)
217 PRK12285 tryptophanyl-tRNA syn 20.2 65 0.0014 37.6 2.3 52 821-874 185-258 (368)
No 1
>KOG2007|consensus
Probab=100.00 E-value=7e-101 Score=851.87 Aligned_cols=298 Identities=47% Similarity=0.758 Sum_probs=257.8
Q ss_pred hhhhhhhhhcccccccCCCCCCeee---------ec----CCcceEEehhHHHHHhhhcCCeEEEecccccchHHHHHHH
Q psy6851 405 KSTEILNQCDRLRDEVLPNVGVRLE---------DI----EGKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRA 471 (948)
Q Consensus 405 ~~LKLyNSldr~ReeflP~~G~~V~---------D~----hARTyVsfDilrR~l~~y~gy~v~~v~NiTDiDDKIi~ra 471 (948)
+.|+||||+||.|++|+|..|..|+ |. |||+||+||||||||+|||||+|+|||||||||||||+||
T Consensus 33 ~~L~lYNslTr~Ke~fip~~~~~v~wY~CGpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDDKII~RA 112 (586)
T KOG2007|consen 33 TELKLYNSLTRQKEVFIPNNGNKVTWYICGPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDDKIIKRA 112 (586)
T ss_pred CeEEEeeccccccceeeeCCCCeEEEEEecCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchhHHHHHHh
Confidence 4679999999999999999866555 76 9999999999999999999999999999999999999999
Q ss_pred HhcchhhhhhhhhhhhhhhhHhhHHHHHHHHHhhhccCCChhhHHHHHHHhHhhHHhhhhcccCCCCccccccchhhhhh
Q psy6851 472 RQNYLFEKHVQENEIQTSKILKDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQPEGTINNIKNVTFQKL 551 (948)
Q Consensus 472 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (948)
|.+...+ .+ +
T Consensus 113 r~~~m~e-----~~----------------------------------------------~------------------- 122 (586)
T KOG2007|consen 113 RKEEMGE-----KP----------------------------------------------L------------------- 122 (586)
T ss_pred hhhhhcc-----ch----------------------------------------------h-------------------
Confidence 9431100 00 0
Q ss_pred hhhccCCCccccccccCCCCccccccccCCcchhhhhhhhhhhHHHHhhhccCcchhhhhhccCCCccccccccccHHHH
Q psy6851 552 LTAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLDSLHGSSITDNSIFATLPKHW 631 (948)
Q Consensus 552 ~~a~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~ld~~~g~~~~~~~~f~~~~~~~ 631 (948)
+++ ..| .+|
T Consensus 123 ------------------------------------------~l~-------------------------~~F----~~~ 131 (586)
T KOG2007|consen 123 ------------------------------------------SLS-------------------------ERF----CYY 131 (586)
T ss_pred ------------------------------------------hHH-------------------------HHH----HHH
Confidence 000 012 289
Q ss_pred HHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cccCCcccccCCCCCccccccCCCCCcccccchhhhhh
Q psy6851 632 EAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKK 710 (948)
Q Consensus 632 ~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvssede~pa~k~~~k~~~~~~~~~~akk 710 (948)
|++|+.||++|||+|||++||||||||+||.|||+||+||+ |.++||||||+.+
T Consensus 132 e~eF~~DM~~LnvLpPtv~tRVSeyvp~II~fIqkIIdnG~aY~~dGsVYFdv~k------------------------- 186 (586)
T KOG2007|consen 132 EEEFLQDMAALNVLPPTVQTRVSEYVPQIIKFIQKIIDNGYAYAVDGSVYFDVDK------------------------- 186 (586)
T ss_pred HHHHHHHHHHhCCCCCcccchhhhchHHHHHHHHHHHhCCceeeeCCcEEEeccc-------------------------
Confidence 99999999999999999999999999999999999999999 9999999999998
Q ss_pred cCCCCCCCCCCCCCCcCcCCCCcccccccChhhhhhcCCCCCCCCCCCCCcccccCCCCchhhccCCCCCCccccccCCC
Q psy6851 711 AESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRS 790 (948)
Q Consensus 711 ~eSSsd~~ssse~e~~a~~~~~k~~~~a~~~~~~k~~~ssSd~~Sssede~p~~k~~~~~~~~~~~~~~~~~~~~~~K~~ 790 (948)
++ +.|+|++... + .+.+|+|+++ ++.|||
T Consensus 187 ------f~----------~~YgKL~G~~-~-------------------------------~~~~gEg~l~---ds~KR~ 215 (586)
T KOG2007|consen 187 ------FP----------HSYGKLVGQR-K-------------------------------NLQEGEGVLS---DSRKRS 215 (586)
T ss_pred ------cc----------chhhhhcCch-h-------------------------------hcccCcCccc---cccCCC
Confidence 54 4799997321 0 4567778776 689999
Q ss_pred CCCcceeeccCCCCCcccCCCCCCCCchhHHHHHHHHhhcCCCceeecCCCCCCCCCChhHHHHHhccCCCC--------
Q psy6851 791 PNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLPTHD-------- 862 (948)
Q Consensus 791 ~~DfaLwk~~k~~ep~w~spwg~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~-------- 862 (948)
|+||||||++|+|||+|+||||+|||||||||||||+.+||.+||||+||+||+|||||||||||||++.++
T Consensus 216 p~DFALWKAsK~gEP~WeSPWG~GRPGWHIECSaMas~~lG~~lDIH~GG~DL~FPHHeNEiAQ~eA~~~~~~wVnYflH 295 (586)
T KOG2007|consen 216 PADFALWKASKPGEPSWESPWGKGRPGWHIECSAMASAILGSQLDIHGGGIDLAFPHHENEIAQSEAAFDDSQWVNYFLH 295 (586)
T ss_pred hhhhhhhhhcCCCCCCCCCCCCCCCCCceeeeHHHHHHhhccccceecCcccccCCCcccHHHHHHHHhcCCccceeEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred -----CCCccccchhhhH------hhhH---H------------------------HHHHHHHHHHHHHHHHHhhccccc
Q psy6851 863 -----QEGKELSKGLAKK------LKKL---Q------------------------LTQEKKYNEYIASVQKATLHGLLV 904 (948)
Q Consensus 863 -----~~g~kmsKsl~n~------l~~~---~------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 904 (948)
|+|+||||||+|| |++| | +++|+.+++||..|+++++...
T Consensus 296 tGhL~i~g~KMSKSLkNFiTIke~Lk~~sp~qLRl~fl~~~wr~~ldYs~s~m~~a~q~e~~~~~ff~~~~al~~~~~-- 373 (586)
T KOG2007|consen 296 TGHLTINGEKMSKSLKNFITIKEALKKYSPRQLRLAFLLHQWRSPLDYSDSTMEQALQLEKSLNNFFLDVKALLRGAK-- 373 (586)
T ss_pred cCeeeeccchhhhhhccceeHHHHHHhcCHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccc--
Confidence 8999999999999 5555 2 6999999999999999998843
Q ss_pred cccCCCCCCcchhhhhHHHHHH
Q psy6851 905 CFCFQGLPTHDQEGKELSKGLA 926 (948)
Q Consensus 905 ~~~f~kw~~~~~E~~~~~~~~~ 926 (948)
.|++|+..| .+|.+.|.
T Consensus 374 --~~~~~~~~e---~~l~~~~~ 390 (586)
T KOG2007|consen 374 --PFEKLSEKE---AELLEDFG 390 (586)
T ss_pred --hhhccChHH---HHHHHhhh
Confidence 378999888 45554444
No 2
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.9e-90 Score=775.93 Aligned_cols=248 Identities=41% Similarity=0.701 Sum_probs=220.0
Q ss_pred hhhhhhhhcccccccCCCC---------CCeeeec----CCcceEEehhHHHHHhhhcCCeEEEecccccchHHHHHHHH
Q psy6851 406 STEILNQCDRLRDEVLPNV---------GVRLEDI----EGKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRAR 472 (948)
Q Consensus 406 ~LKLyNSldr~ReeflP~~---------G~~V~D~----hARTyVsfDilrR~l~~y~gy~v~~v~NiTDiDDKIi~ra~ 472 (948)
+|+||||+||.+++|.|.. |++|+|. |+||||+||+|||+|+ |.||.|+|||||||||||||+||+
T Consensus 1 ~l~iyNTltr~ke~F~P~~~~~V~mYvCGpTVYd~~HIGhaRt~V~fDvl~R~L~-~~Gy~V~yV~NiTDIDDKIi~rA~ 79 (464)
T COG0215 1 MLKLYNTLTRQKEEFVPIDPGKVKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLR-YLGYKVTYVRNITDIDDKIINRAR 79 (464)
T ss_pred CcEEEecCccceecccCCCCCeEEEEecCCccCCccccccCcceehHHHHHHHHH-HhCCeEEEEeccccccHHHHHHHH
Confidence 3689999999999999876 5566666 9999999999999999 889999999999999999999999
Q ss_pred hcchhhhhhhhhhhhhhhhHhhHHHHHHHHHhhhccCCChhhHHHHHHHhHhhHHhhhhcccCCCCccccccchhhhhhh
Q psy6851 473 QNYLFEKHVQENEIQTSKILKDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQPEGTINNIKNVTFQKLL 552 (948)
Q Consensus 473 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (948)
++++ .
T Consensus 80 ~~g~--------~------------------------------------------------------------------- 84 (464)
T COG0215 80 EEGL--------S------------------------------------------------------------------- 84 (464)
T ss_pred HhCC--------C-------------------------------------------------------------------
Confidence 9853 0
Q ss_pred hhccCCCccccccccCCCCccccccccCCcchhhhhhhhhhhHHHHhhhccCcchhhhhhccCCCccccccccccHHHHH
Q psy6851 553 TAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLDSLHGSSITDNSIFATLPKHWE 632 (948)
Q Consensus 553 ~a~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~ld~~~g~~~~~~~~f~~~~~~~~ 632 (948)
+.+++++|+
T Consensus 85 -----------------------------------------------------------------------~~ev~~~~i 93 (464)
T COG0215 85 -----------------------------------------------------------------------IREVAERYI 93 (464)
T ss_pred -----------------------------------------------------------------------HHHHHHHHH
Confidence 014678999
Q ss_pred HHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-ccc-CCcccccCCCCCccccccCCCCCcccccchhhhhh
Q psy6851 633 AEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KKA-ESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKK 710 (948)
Q Consensus 633 ~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~~-~gsvyfdvssede~pa~k~~~k~~~~~~~~~~akk 710 (948)
++|++||++|||++|+++||||+|||+||++|++|+++|| |.+ +|+|||+|++
T Consensus 94 ~~f~~D~~aL~v~~p~~~PraTe~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~~------------------------- 148 (464)
T COG0215 94 AAFFEDMDALNVLPPDIEPRATEHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSK------------------------- 148 (464)
T ss_pred HHHHHHHHHhCCCCCcccCcHhhCHHHHHHHHHHHHHCCceEEecCCcEEEeccc-------------------------
Confidence 9999999999999999999999999999999999999999 997 7999999999
Q ss_pred cCCCCCCCCCCCCCCcCcCCCCcccccccChhhhhhcCCCCCCCCCCCCCcccccCCCCchhhccCCCCCCccccccCCC
Q psy6851 711 AESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRS 790 (948)
Q Consensus 711 ~eSSsd~~ssse~e~~a~~~~~k~~~~a~~~~~~k~~~ssSd~~Sssede~p~~k~~~~~~~~~~~~~~~~~~~~~~K~~ 790 (948)
+. .|++++....- + .+..|.+ ...+.+|||
T Consensus 149 ------f~-----------~YG~LS~~~~l-----------e-------------------~l~~gar---~~~~~~Krn 178 (464)
T COG0215 149 ------FK-----------DYGKLSGRDSL-----------E-------------------ELQAGAR---VEVDEEKRN 178 (464)
T ss_pred ------ch-----------hhHhhcCCCCh-----------h-------------------HHhhccc---cccccccCC
Confidence 64 79999753211 1 1222222 222467999
Q ss_pred CCCcceeeccCCCCCcccCCCCCCCCchhHHHHHHHHhhcCCCceeecCCCCCCCCCChhHHHHHhccCCCC--------
Q psy6851 791 PNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLPTHD-------- 862 (948)
Q Consensus 791 ~~DfaLwk~~k~~ep~w~spwg~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~-------- 862 (948)
|.||+|||++|||||+|+||||+||||||||||||+.++||++|||||||+||+|||||||||||||++|..
T Consensus 179 p~DFvLWK~sk~gEp~W~SPWG~GRPGWHIECSaM~~~~LG~~~DIHgGG~DLiFPHHENEiAQsea~~g~~~~a~yWmH 258 (464)
T COG0215 179 PLDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMSTKYLGETFDIHGGGSDLIFPHHENEIAQSEAATGVKPFAKYWMH 258 (464)
T ss_pred chhheeeccCCCCCCCCCCCCCCCCCchhHHHHHHHHHHhCCCcceecCcccccCCCcccHHHHHHhhhCCCcceeEeEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999933
Q ss_pred -----CCCccccchhhhH
Q psy6851 863 -----QEGKELSKGLAKK 875 (948)
Q Consensus 863 -----~~g~kmsKsl~n~ 875 (948)
|+|+|||||||||
T Consensus 259 ~G~l~i~geKMSKSLGNf 276 (464)
T COG0215 259 NGFLNIDGEKMSKSLGNF 276 (464)
T ss_pred cceeeecCcCcccccCCe
Confidence 8999999999999
No 3
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=100.00 E-value=1.5e-81 Score=741.10 Aligned_cols=284 Identities=47% Similarity=0.775 Sum_probs=244.0
Q ss_pred hhhhhhhhhcccccccCCCCCCeee---------ec----CCcceEEehhHHHHHhhhcCCeEEEecccccchHHHHHHH
Q psy6851 405 KSTEILNQCDRLRDEVLPNVGVRLE---------DI----EGKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRA 471 (948)
Q Consensus 405 ~~LKLyNSldr~ReeflP~~G~~V~---------D~----hARTyVsfDilrR~l~~y~gy~v~~v~NiTDiDDKIi~ra 471 (948)
+.|+||||+||.+++|+|..|..|. |. |+||||+||||||+|+|||||+|+|||||||||||||+||
T Consensus 38 ~~l~lyNtlt~~k~~f~p~~~~~v~~Y~CGPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A 117 (651)
T PTZ00399 38 TGLKVNNSLTGGKVEFVPQNGRQVRWYTCGPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRA 117 (651)
T ss_pred CceEEEECCCCCccccccCCCCeeEEEEeCCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHH
Confidence 4579999999999999998866655 54 9999999999999999999999999999999999999999
Q ss_pred HhcchhhhhhhhhhhhhhhhHhhHHHHHHHHHhhhccCCChhhHHHHHHHhHhhHHhhhhcccCCCCccccccchhhhhh
Q psy6851 472 RQNYLFEKHVQENEIQTSKILKDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQPEGTINNIKNVTFQKL 551 (948)
Q Consensus 472 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (948)
+++++
T Consensus 118 ~~~g~--------------------------------------------------------------------------- 122 (651)
T PTZ00399 118 REEKL--------------------------------------------------------------------------- 122 (651)
T ss_pred HHhCC---------------------------------------------------------------------------
Confidence 98753
Q ss_pred hhhccCCCccccccccCCCCccccccccCCcchhhhhhhhhhhHHHHhhhccCcchhhhhhccCCCccccccccccHHHH
Q psy6851 552 LTAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLDSLHGSSITDNSIFATLPKHW 631 (948)
Q Consensus 552 ~~a~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~ld~~~g~~~~~~~~f~~~~~~~ 631 (948)
+||.+|+++|
T Consensus 123 ----------------------------------------------------------------------~~~~el~~~~ 132 (651)
T PTZ00399 123 ----------------------------------------------------------------------SIFLELARKW 132 (651)
T ss_pred ----------------------------------------------------------------------CcHHHHHHHH
Confidence 0233578999
Q ss_pred HHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cccCCcccccCCCCCccccccCCCCCcccccchhhhhh
Q psy6851 632 EAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKK 710 (948)
Q Consensus 632 ~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvssede~pa~k~~~k~~~~~~~~~~akk 710 (948)
+++|++||++|||++|+++||||+|||+||++|++|+++|+ |+.+||||||+++
T Consensus 133 ~~~f~~d~~~Lni~~p~~~~r~tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~~------------------------- 187 (651)
T PTZ00399 133 EKEFFEDMKALNVRPPDVITRVSEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEA------------------------- 187 (651)
T ss_pred HHHHHHHHHHcCCCCCccccCcCccHHHHHHHHHHHHHCCCEEEECCeEEEEchh-------------------------
Confidence 99999999999999999999999999999999999999999 9999999999999
Q ss_pred cCCCCCCCCCCCCCCcCcCCCCcccccccChhhhhhcCCCCCCCCCCCCCcccccCCCCchhhccCCCCCCccccccCCC
Q psy6851 711 AESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRS 790 (948)
Q Consensus 711 ~eSSsd~~ssse~e~~a~~~~~k~~~~a~~~~~~k~~~ssSd~~Sssede~p~~k~~~~~~~~~~~~~~~~~~~~~~K~~ 790 (948)
+... .+.|++++|.... +. ..+..|+|.++. ..+.|||
T Consensus 188 ------f~~~-------~~~Yg~L~p~~~~-----------~~-----------------~~~~~g~~~l~~-~~~~Kr~ 225 (651)
T PTZ00399 188 ------FRKA-------GHVYPKLEPESVA-----------DE-----------------DRIAEGEGALGK-VSGEKRS 225 (651)
T ss_pred ------cccc-------hhhHHhhChhhcC-----------CH-----------------HHHhcccCCccc-cCcCCCC
Confidence 5421 1479998765432 11 023345543321 1247999
Q ss_pred CCCcceeeccCCCCCcccCCCCCCCCchhHHHHHHHHhhcCCCceeecCCCCCCCCCChhHHHHHhccCCCC--------
Q psy6851 791 PNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLPTHD-------- 862 (948)
Q Consensus 791 ~~DfaLwk~~k~~ep~w~spwg~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~-------- 862 (948)
|.||||||.++||||.|+||||.||||||||||||++++||.+|||||||+||+|||||||||||||++|+.
T Consensus 226 ~~DFaLWk~~kpgep~W~SpwG~GrPGWHiECsam~~~~lg~~~DIh~gG~DL~FPHHeNEiAQseA~~~~~~~v~y~~H 305 (651)
T PTZ00399 226 PNDFALWKASKPGEPSWDSPWGKGRPGWHIECSAMASNILGDPIDIHSGGIDLKFPHHDNELAQSEAYFDKHQWVNYFLH 305 (651)
T ss_pred CccHHhhCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHcCCcceeeccCCCCCCCcchhHHHHHHHhhCCCCCCcEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999972
Q ss_pred -----CCCccccchhhhH------hhhHH---------------------------HHHHHHHHHHHHHHHHHhhc
Q psy6851 863 -----QEGKELSKGLAKK------LKKLQ---------------------------LTQEKKYNEYIASVQKATLH 900 (948)
Q Consensus 863 -----~~g~kmsKsl~n~------l~~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 900 (948)
++|+||||||||| |++|. ...+..|.+||.+|...++.
T Consensus 306 ~G~L~i~G~KMSKSLGNfItp~dlLekygaDaLR~~lLs~~~~~dldFS~e~l~~a~~~~~~l~n~~~rl~s~l~~ 381 (651)
T PTZ00399 306 SGHLHIKGLKMSKSLKNFITIRQALSKYTARQIRLLFLLHKWDKPMNYSDESMDEAIEKDKVFFNFFANVKIKLRE 381 (651)
T ss_pred EEEEEeccchhhhcCCCcccHHHHHHHcChHHHHHHHHhcCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8999999999999 34440 44566799999999877654
No 4
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=100.00 E-value=1.7e-82 Score=684.42 Aligned_cols=229 Identities=46% Similarity=0.772 Sum_probs=182.6
Q ss_pred CCCeeeec----CCcceEEehhHHHHHhhhcCCeEEEecccccchHHHHHHHHhcchhhhhhhhhhhhhhhhHhhHHHHH
Q psy6851 424 VGVRLEDI----EGKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQTSKILKDIGEVM 499 (948)
Q Consensus 424 ~G~~V~D~----hARTyVsfDilrR~l~~y~gy~v~~v~NiTDiDDKIi~ra~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 499 (948)
+|++|+|. |+||||+||||||+|+ ++||+|+|||||||||||||+||++++. +
T Consensus 14 CGPTVYd~~HiGhaR~~v~~D~l~R~L~-~~g~~V~~V~NiTDiDDKii~~A~~~g~----------~------------ 70 (300)
T PF01406_consen 14 CGPTVYDYAHIGHARTYVFFDVLRRYLE-YLGYDVTYVMNITDIDDKIIKRAREEGV----------S------------ 70 (300)
T ss_dssp EEEBTTS--BHHHHHHHHHHHHHHHHHH-HTT-EEEEEEEEB-SSHHHHHHHHHTTS-----------------------
T ss_pred CCCCCCCCCCCcceeeeeeHHHHHHHHH-HcCCeEEEEEeccccchHHHHHHHhccC----------C------------
Confidence 46666666 9999999999999999 7999999999999999999999999742 0
Q ss_pred HHHHhhhccCCChhhHHHHHHHhHhhHHhhhhcccCCCCccccccchhhhhhhhhccCCCccccccccCCCCcccccccc
Q psy6851 500 GAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQPEGTINNIKNVTFQKLLTAVRDPFSDWLDSLHGSSITDNSIFAT 579 (948)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~~~~~~~~~~~ 579 (948)
T Consensus 71 -------------------------------------------------------------------------------- 70 (300)
T PF01406_consen 71 -------------------------------------------------------------------------------- 70 (300)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcchhhhhhhhhhhHHHHhhhccCcchhhhhhccCCCccccccccccHHHHHHHHHHHHhhcCCCCCCeeecccccHHH
Q psy6851 580 LPKHWEAEFHKDMADLNKLLTAVRDPLSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPE 659 (948)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~ld~~~g~~~~~~~~f~~~~~~~~~~f~~dm~~L~v~~p~~~~rvse~i~~ 659 (948)
..+|+++|+++|++||++|||++|+++||||||||+
T Consensus 71 --------------------------------------------~~ela~~y~~~f~~dm~~Lnv~~p~~~prate~i~~ 106 (300)
T PF01406_consen 71 --------------------------------------------PQELARRYEEEFFEDMKALNVLPPDHYPRATEHIPE 106 (300)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHHHHHHTT----SEEEEGGGGHHH
T ss_pred --------------------------------------------HHHHHHHHHHHHHHHHHHcCCCCCccccchhccHHH
Confidence 014789999999999999999999999999999999
Q ss_pred HHHHHhCcccCCC-cccC-CcccccCCCCCccccccCCCCCcccccchhhhhhcCCCCCCCCCCCCCCcCcCCCCccccc
Q psy6851 660 IVASAQTPKPAAA-KKAE-SSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQ 737 (948)
Q Consensus 660 ii~~i~~l~~~g~-Y~~~-gsvyfdvssede~pa~k~~~k~~~~~~~~~~akk~eSSsd~~ssse~e~~a~~~~~k~~~~ 737 (948)
||++|++|+++|+ |+++ ||||||+++ +. .|++++..
T Consensus 107 ii~~i~~Li~~G~AY~~~~g~VYFdv~~-------------------------------~~-----------~YG~Ls~~ 144 (300)
T PF01406_consen 107 IIELIEKLIDKGHAYESEDGSVYFDVSK-------------------------------FP-----------DYGKLSNQ 144 (300)
T ss_dssp HHHHHHHHHHTTSEEEETTSEEEE-CCG-------------------------------ST-----------TTTTTTT-
T ss_pred HHHHHHHHHHCCCeEEcCCCcEEEeecc-------------------------------cc-----------cccccccc
Confidence 9999999999999 9987 999999998 43 79998764
Q ss_pred ccChhhhhhcCCCCCCCCCCCCCcccccCCCCchhhccCCCCCCccccccCCCCCCcceeeccCCCCCcccCCCCCCCCc
Q psy6851 738 AAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPG 817 (948)
Q Consensus 738 a~~~~~~k~~~ssSd~~Sssede~p~~k~~~~~~~~~~~~~~~~~~~~~~K~~~~DfaLwk~~k~~ep~w~spwg~GrPg 817 (948)
... .+..+.. ...+++|+||.||||||++++|||+|+||||+||||
T Consensus 145 ~~~-------------------------------~l~~~~~---~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPG 190 (300)
T PF01406_consen 145 DLE-------------------------------DLEAGAR---VEVDYEKRNPRDFALWKAAKPGEPSWDSPWGKGRPG 190 (300)
T ss_dssp SHH-------------------------------HHHHCHH---HTT-TTSSSTT-EEEEEE--TTS--B--TTSSEEE-
T ss_pred chh-------------------------------hHHhhhh---cccccccCCCcceeeeecccccCCcccCCCccCcCc
Confidence 321 1222211 111378999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhcCCCceeecCCCCCCCCCChhHHHHHhccCCCC------------CCCccccchhhhH
Q psy6851 818 WHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLPTHD------------QEGKELSKGLAKK 875 (948)
Q Consensus 818 WHieCs~m~~~~lg~~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~------------~~g~kmsKsl~n~ 875 (948)
||||||||+.++||.+|||||||+||+|||||||||||||+++++ ++|+|||||||||
T Consensus 191 WHiECsam~~~~lG~~~DIH~GG~DL~FPHHENEiAqs~a~~g~~~a~~W~H~g~l~~~g~KMSKSlgN~ 260 (300)
T PF01406_consen 191 WHIECSAMSMKYLGDTFDIHGGGIDLIFPHHENEIAQSEAATGKPFANYWMHNGHLNVDGEKMSKSLGNF 260 (300)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEEGGGTTTHHHHHHHHHHHHHSS-SEEEEEEE--EEETTCE--TTTT--
T ss_pred eeeehHHHHHHHcCCCceEEccccccCCCCccchHHHHHHhhCchHHHHHHHHHHHhhcCccccccCCCE
Confidence 999999999999999999999999999999999999999999866 8999999999999
No 5
>PLN02946 cysteine-tRNA ligase
Probab=100.00 E-value=3.5e-79 Score=706.04 Aligned_cols=249 Identities=38% Similarity=0.641 Sum_probs=220.5
Q ss_pred hhhhhhhhhhcccccccCCCCC---------Ceeeec----CCcceEEehhHHHHHhhhcCCeEEEecccccchHHHHHH
Q psy6851 404 IKSTEILNQCDRLRDEVLPNVG---------VRLEDI----EGKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKR 470 (948)
Q Consensus 404 ~~~LKLyNSldr~ReeflP~~G---------~~V~D~----hARTyVsfDilrR~l~~y~gy~v~~v~NiTDiDDKIi~r 470 (948)
.+.|+||||+++.+++|.|..+ ++|+|. |+|+||+||||||+|+ |+||+|+|||||||||||||++
T Consensus 57 ~~~l~lyNTltr~ke~f~P~~~~~v~~Y~CGpTvYd~~HIGhaR~~V~~Dvl~R~Lr-~~Gy~V~~V~niTDiDDKIi~~ 135 (557)
T PLN02946 57 GRELHLYNTMSRKKELFKPKVEGKVGMYVCGVTAYDLSHIGHARVYVTFDVLYRYLK-HLGYEVRYVRNFTDVDDKIIAR 135 (557)
T ss_pred CCceEEEECCCCCeeccccCCCCceeEEEeCCccCCCCccccchhhHHHHHHHHHHH-hcCCcEEEEECCCCccCHHHHH
Confidence 3568999999999999998764 455554 9999999999999998 9999999999999999999999
Q ss_pred HHhcchhhhhhhhhhhhhhhhHhhHHHHHHHHHhhhccCCChhhHHHHHHHhHhhHHhhhhcccCCCCccccccchhhhh
Q psy6851 471 ARQNYLFEKHVQENEIQTSKILKDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQPEGTINNIKNVTFQK 550 (948)
Q Consensus 471 a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (948)
|++++. +
T Consensus 136 A~~~g~----------~--------------------------------------------------------------- 142 (557)
T PLN02946 136 ANELGE----------D--------------------------------------------------------------- 142 (557)
T ss_pred HHHcCC----------C---------------------------------------------------------------
Confidence 998742 0
Q ss_pred hhhhccCCCccccccccCCCCccccccccCCcchhhhhhhhhhhHHHHhhhccCcchhhhhhccCCCccccccccccHHH
Q psy6851 551 LLTAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLDSLHGSSITDNSIFATLPKH 630 (948)
Q Consensus 551 ~~~a~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~ld~~~g~~~~~~~~f~~~~~~ 630 (948)
..+|+++
T Consensus 143 -------------------------------------------------------------------------~~ela~~ 149 (557)
T PLN02946 143 -------------------------------------------------------------------------PISLSRR 149 (557)
T ss_pred -------------------------------------------------------------------------HHHHHHH
Confidence 0146889
Q ss_pred HHHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cccCCcccccCCCCCccccccCCCCCcccccchhhhh
Q psy6851 631 WEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAK 709 (948)
Q Consensus 631 ~~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvssede~pa~k~~~k~~~~~~~~~~ak 709 (948)
|+++|++||++|||.+|+++||||+||++||++|++|+++|+ |+.+|+|||||++
T Consensus 150 y~~~f~~d~~~LnI~~p~~~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~~------------------------ 205 (557)
T PLN02946 150 YCEEFLSDMAYLHCLPPSVEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDK------------------------ 205 (557)
T ss_pred HHHHHHHHHHHCCCCCCCeecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecCc------------------------
Confidence 999999999999999999999999999999999999999999 9999999999998
Q ss_pred hcCCCCCCCCCCCCCCcCcCCCCcccccccChhhhhhcCCCCCCCCCCCCCcccccCCCCchhhccCCCCCCccccccCC
Q psy6851 710 KAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKR 789 (948)
Q Consensus 710 k~eSSsd~~ssse~e~~a~~~~~k~~~~a~~~~~~k~~~ssSd~~Sssede~p~~k~~~~~~~~~~~~~~~~~~~~~~K~ 789 (948)
+. .|++++..... .+..|.. ++.+.+|+
T Consensus 206 -------f~-----------~YG~Ls~~~l~-------------------------------~l~~g~r---v~~~~~K~ 233 (557)
T PLN02946 206 -------FP-----------EYGKLSGRKLE-------------------------------DNRAGER---VAVDSRKK 233 (557)
T ss_pred -------ch-----------hhhhcCCCChh-------------------------------HhhcCCC---CCcccccC
Confidence 54 69999753221 2223322 12245899
Q ss_pred CCCCcceeeccCCCCCcccCCCCCCCCchhHHHHHHHHhhcCCCceeecCCCCCCCCCChhHHHHHhccCCCC-------
Q psy6851 790 SPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLPTHD------- 862 (948)
Q Consensus 790 ~~~DfaLwk~~k~~ep~w~spwg~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~------- 862 (948)
||.||||||++|+|||+|+||||+||||||||||||+++|||.+|||||||+||+||||||||||+||++++.
T Consensus 234 np~DFaLWK~~k~ge~~W~SPWG~GRPGWHIECSaMs~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~a~yW~H 313 (557)
T PLN02946 234 NPADFALWKAAKEGEPFWDSPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACCDSNISYWIH 313 (557)
T ss_pred CccccceeccCCCCCCCccCCCCCCCCcHHHHHHHHHHHHcCCCeeEeccccccCCCcccchHHHHHHHhCCCCCceeeE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987765
Q ss_pred -----CCCccccchhhhH
Q psy6851 863 -----QEGKELSKGLAKK 875 (948)
Q Consensus 863 -----~~g~kmsKsl~n~ 875 (948)
++|+|||||+|||
T Consensus 314 ~G~v~~~G~KMSKSlGN~ 331 (557)
T PLN02946 314 NGFVTVDSEKMSKSLGNF 331 (557)
T ss_pred eeEEEeCCCCcCCcCCCc
Confidence 7999999999999
No 6
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.8e-77 Score=670.05 Aligned_cols=317 Identities=24% Similarity=0.347 Sum_probs=255.6
Q ss_pred HHhcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeee-CCcEEEeeccCCCCCC--
Q psy6851 93 EAQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYES-NGSVYFNVNAFDSQPN-- 167 (948)
Q Consensus 93 a~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes-~GsVYFDv~~f~~~g~-- 167 (948)
|++.|+++.+++++|+++|.+||. ||+||+++||||+|||+|| +||++||++||||++ +|+|||||++|++||.
T Consensus 78 A~~~g~~~~ev~~~~i~~f~~D~~aL~v~~p~~~PraTe~I~~iI-~~I~~LiekG~AY~~~~G~VYFdv~~f~~YG~LS 156 (464)
T COG0215 78 AREEGLSIREVAERYIAAFFEDMDALNVLPPDIEPRATEHIDEII-EFIEKLIEKGYAYVADDGDVYFDVSKFKDYGKLS 156 (464)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHhCCCCCcccCcHhhCHHHHH-HHHHHHHHCCceEEecCCcEEEecccchhhHhhc
Confidence 444555666666667778888887 9999999999999999999 799999999999998 7999999999999653
Q ss_pred -C--------------CccccCCccccccccccCCCCcCCCCCCCcccCCCCCCCCCCcceeEe-------eccC-cccc
Q psy6851 168 -H--------------YYAKLVPEAYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIFF-------YGTR-ETGI 224 (948)
Q Consensus 168 -~--------------~YgKL~P~DFaLWK~ak~gEp~wespWg~~~~~m~~~~~GRPGWHIEc-------LG~~-dih~ 224 (948)
. .-.|.+|.||+|||+++||||.|+||||. ||||||||| ||++ ||||
T Consensus 157 ~~~~le~l~~gar~~~~~~Krnp~DFvLWK~sk~gEp~W~SPWG~----------GRPGWHIECSaM~~~~LG~~~DIHg 226 (464)
T COG0215 157 GRDSLEELQAGARVEVDEEKRNPLDFVLWKAAKPGEPSWDSPWGK----------GRPGWHIECSAMSTKYLGETFDIHG 226 (464)
T ss_pred CCCChhHHhhccccccccccCCchhheeeccCCCCCCCCCCCCCC----------CCCchhHHHHHHHHHHhCCCcceec
Confidence 0 12466789999999999999999999995 999999999 9999 9999
Q ss_pred ccccccCCccccc-----------------cccccEEEcccchhhcchhHHHHHHH----------HHHHHHHHhh-cCC
Q psy6851 225 CRQDELFPYTEFK-----------------DKYGKVRVHLSQKQQSLKLVVIMKEF----------FLNVKDHIRN-LKF 276 (948)
Q Consensus 225 GG~DL~FPHHEne-----------------~h~G~l~i~geKMSKSLGN~vti~ef----------~l~ls~hyR~-l~~ 276 (948)
||+||+||||||| +|+|||+|+|+|||||||||+||+++ |+++++|||+ ++|
T Consensus 227 GG~DLiFPHHENEiAQsea~~g~~~~a~yWmH~G~l~i~geKMSKSLGNfiti~d~l~~~~p~~lR~~lls~HYR~pl~f 306 (464)
T COG0215 227 GGSDLIFPHHENEIAQSEAATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLLKKYDPEVLRLFLLSSHYRSPLDF 306 (464)
T ss_pred CcccccCCCcccHHHHHHhhhCCCcceeEeEEcceeeecCcCcccccCCeeEHHHHHhhcCHHHHHHHHHHHHhCCcccc
Confidence 9999999999997 78999999999999999999999986 3559999999 999
Q ss_pred ChhhhH----HHHhhHHHhHHHhH--------HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcCCCCHHHHHH
Q psy6851 277 PATTVS----SFEKWTQADLELST--------RFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGTPNQLLLRD 344 (948)
Q Consensus 277 s~~~l~----~~~r~~~ad~eL~~--------~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~~~~~~lL~~ 344 (948)
|++.|+ .++||...-..+.. ...+...+|.+||+||||||.||++|+++++.+|..++.+.. ....
T Consensus 307 see~L~~A~~~l~rl~~~~~~~~~~~~~~~~~~~~~~~~~f~~al~DDfnt~~al~~l~~l~~~~~~~~~~~~~--~~~~ 384 (464)
T COG0215 307 SEELLEEAKKALERLYNALRRLRDLAGDAELADLKEFEARFREALDDDFNTPKALAVLFELAKEINRLLEEGKS--DAKA 384 (464)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhhhhcccc--chHH
Confidence 999886 45666655332211 345677889999999999999999999999999888775533 2234
Q ss_pred HHHHHHHHHhHcccccccccCCCCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCC
Q psy6851 345 IGAYVTKILTVFGCIGDVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLRDEVLPNV 424 (948)
Q Consensus 345 i~~~V~~mL~VLGL~~~~~~ig~~~~~~~~~~ss~eel~~~~Ld~Lv~~R~~iR~~AR~~~~LKLyNSldr~ReeflP~~ 424 (948)
++..+..++.+||+ ...++ +...+.. .+.. ....|+.|++.|.++|+. |.|..+|++|+.| ...
T Consensus 385 ~~~~~~~~~~~lg~--~~l~~-~~~~~~~-~~~~----~~~~i~~Li~~R~~aR~~-------K~~~~AD~iRd~L-~~~ 448 (464)
T COG0215 385 VLSALKALLAILGL--KVLGL-FPQSGAQ-EDES----DDEEIEALIEERLEARKA-------KNWALADEIRDEL-LAL 448 (464)
T ss_pred HHHHHHHHHHHhCc--hhhcc-ccccccc-cccc----hHHHHHHHHHHHHHHHHh-------hCHHHHHHHHHHH-HHC
Confidence 55667777777775 11110 1111000 0111 224689999998888887 9999999999997 689
Q ss_pred CCeeeecCCcceEE
Q psy6851 425 GVRLEDIEGKSYIT 438 (948)
Q Consensus 425 G~~V~D~hARTyVs 438 (948)
|+.|+|++.+|.|.
T Consensus 449 Gi~leD~~~gt~w~ 462 (464)
T COG0215 449 GIILEDTPDGTTWR 462 (464)
T ss_pred CcEEEECCCCeEEE
Confidence 99999998777764
No 7
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.9e-77 Score=694.60 Aligned_cols=248 Identities=38% Similarity=0.633 Sum_probs=217.9
Q ss_pred hhhhhhhhhcccccccCCCC---------CCeeeec----CCcceEEehhHHHHHhhhcCCeEEEecccccchHHHHHHH
Q psy6851 405 KSTEILNQCDRLRDEVLPNV---------GVRLEDI----EGKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRA 471 (948)
Q Consensus 405 ~~LKLyNSldr~ReeflP~~---------G~~V~D~----hARTyVsfDilrR~l~~y~gy~v~~v~NiTDiDDKIi~ra 471 (948)
++|+||||++|.+++|.|.. |++|+|. |+|+||+||||+|+|+ ++||+|+|||||||||||||.+|
T Consensus 226 ~~l~lyNTltr~ke~f~P~~~~~V~mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr-~~Gy~V~fV~NiTD~DDKII~~A 304 (699)
T PRK14535 226 PMTTIYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLR-ECGYPLTYVRNITDIDDKIIARA 304 (699)
T ss_pred CceEEEECCCCCeeccccCCCCceEEEecCCcCCCCCcccchhHHHHHHHHHHHHH-HcCCceEEEeCCcccchHHHHHH
Confidence 56899999999999999876 5555565 9999999999999999 89999999999999999999999
Q ss_pred HhcchhhhhhhhhhhhhhhhHhhHHHHHHHHHhhhccCCChhhHHHHHHHhHhhHHhhhhcccCCCCccccccchhhhhh
Q psy6851 472 RQNYLFEKHVQENEIQTSKILKDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQPEGTINNIKNVTFQKL 551 (948)
Q Consensus 472 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (948)
++++. +
T Consensus 305 ~e~G~----------s---------------------------------------------------------------- 310 (699)
T PRK14535 305 AENGE----------T---------------------------------------------------------------- 310 (699)
T ss_pred HHcCC----------C----------------------------------------------------------------
Confidence 98742 0
Q ss_pred hhhccCCCccccccccCCCCccccccccCCcchhhhhhhhhhhHHHHhhhccCcchhhhhhccCCCccccccccccHHHH
Q psy6851 552 LTAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLDSLHGSSITDNSIFATLPKHW 631 (948)
Q Consensus 552 ~~a~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~ld~~~g~~~~~~~~f~~~~~~~ 631 (948)
..+++++|
T Consensus 311 ------------------------------------------------------------------------p~ela~~y 318 (699)
T PRK14535 311 ------------------------------------------------------------------------IGELTARF 318 (699)
T ss_pred ------------------------------------------------------------------------HHHHHHHH
Confidence 01367899
Q ss_pred HHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-ccc-CCcccccCCCCCccccccCCCCCcccccchhhhh
Q psy6851 632 EAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KKA-ESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAK 709 (948)
Q Consensus 632 ~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~~-~gsvyfdvssede~pa~k~~~k~~~~~~~~~~ak 709 (948)
+++|++||.+|||.+|++.||||+||++||++|++|+++|+ |+. +|+|||||++
T Consensus 319 ~~~F~~d~~~LnI~~p~~~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~------------------------ 374 (699)
T PRK14535 319 IQAMHEDADALGVLRPDIEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVRE------------------------ 374 (699)
T ss_pred HHHHHHHHHHcCCCCCcEeeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEeccc------------------------
Confidence 99999999999999999999999999999999999999999 975 7899999998
Q ss_pred hcCCCCCCCCCCCCCCcCcCCCCcccccccChhhhhhcCCCCCCCCCCCCCcccccCCCCchhhccCCCCCCccccccCC
Q psy6851 710 KAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKR 789 (948)
Q Consensus 710 k~eSSsd~~ssse~e~~a~~~~~k~~~~a~~~~~~k~~~ssSd~~Sssede~p~~k~~~~~~~~~~~~~~~~~~~~~~K~ 789 (948)
+. .|++++.... + .+..|++ ++.+..||
T Consensus 375 -------f~-----------~YG~LS~~~~------------~-------------------~l~~g~r---ve~d~~Kr 402 (699)
T PRK14535 375 -------FA-----------AYGQLSGKSL------------D-------------------DLRAGER---VEVDGFKR 402 (699)
T ss_pred -------cc-----------ccccccCCCh------------H-------------------HhcCCCc---cccccccC
Confidence 54 6999875311 1 1222322 11235699
Q ss_pred CCCCcceeeccCCCCCcccCCCCCCCCchhHHHHHHHHhhcCCCceeecCCCCCCCCCChhHHHHHhccCCC--------
Q psy6851 790 SPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLPTH-------- 861 (948)
Q Consensus 790 ~~~DfaLwk~~k~~ep~w~spwg~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FPHH~ne~aq~e~~~~~-------- 861 (948)
||.||||||++++|||.|+||||+|||||||||||||.++||.+|||||||+||+|||||||||||||++|+
T Consensus 403 np~DFaLWK~sk~Gep~W~SPWG~GRPGWHIECSAMs~~~LG~~~DIHgGG~DLiFPHHENEiAQseA~~g~~~~~~~~~ 482 (699)
T PRK14535 403 DPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQFPHHENEIAQSVGATGHTCGHHHAQ 482 (699)
T ss_pred CccccceeccCCCCCCCccCCCCCCCCchHHHHHHHHHHHcCCcceeECCccccCCCCCccHHHHHHHhhCCCccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999998775
Q ss_pred --------C------------CCCccccchhhhH
Q psy6851 862 --------D------------QEGKELSKGLAKK 875 (948)
Q Consensus 862 --------~------------~~g~kmsKsl~n~ 875 (948)
+ ++|+|||||+|||
T Consensus 483 ~~~~~~~~~~aryWmHnG~V~vdGeKMSKSLGN~ 516 (699)
T PRK14535 483 THHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNF 516 (699)
T ss_pred ccccccccccccEEEECCeEeeCCCccCCCCCCc
Confidence 1 8999999999999
No 8
>KOG2007|consensus
Probab=100.00 E-value=1e-75 Score=651.28 Aligned_cols=318 Identities=39% Similarity=0.591 Sum_probs=271.3
Q ss_pred hcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeeeCCcEEEeeccCCC-CCC----
Q psy6851 95 QKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDS-QPN---- 167 (948)
Q Consensus 95 e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~f~~-~g~---- 167 (948)
+.+.++.+.|..+.+.|.+||. ||+||||+||||||||+|| .||++||+|||||+++|||||||.+|+. ||.
T Consensus 119 e~~~~l~~~F~~~e~eF~~DM~~LnvLpPtv~tRVSeyvp~II-~fIqkIIdnG~aY~~dGsVYFdv~kf~~~YgKL~G~ 197 (586)
T KOG2007|consen 119 EKPLSLSERFCYYEEEFLQDMAALNVLPPTVQTRVSEYVPQII-KFIQKIIDNGYAYAVDGSVYFDVDKFPHSYGKLVGQ 197 (586)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhCCCCCcccchhhhchHHHH-HHHHHHHhCCceeeeCCcEEEecccccchhhhhcCc
Confidence 3456677777778899999998 9999999999999999999 7999999999999999999999999993 321
Q ss_pred -----------CCccccCCccccccccccCCCCcCCCCCCCcccCCCCCCCCCCcceeEe-------eccC-cccccccc
Q psy6851 168 -----------HYYAKLVPEAYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIFF-------YGTR-ETGICRQD 228 (948)
Q Consensus 168 -----------~~YgKL~P~DFaLWK~ak~gEp~wespWg~~~~~m~~~~~GRPGWHIEc-------LG~~-dih~GG~D 228 (948)
..-+|.+|.||||||++|+|||.|+||||. ||||||||| ||.+ |||+||+|
T Consensus 198 ~~~~~~gEg~l~ds~KR~p~DFALWKAsK~gEP~WeSPWG~----------GRPGWHIECSaMas~~lG~~lDIH~GG~D 267 (586)
T KOG2007|consen 198 RKNLQEGEGVLSDSRKRSPADFALWKASKPGEPSWESPWGK----------GRPGWHIECSAMASAILGSQLDIHGGGID 267 (586)
T ss_pred hhhcccCcCccccccCCChhhhhhhhhcCCCCCCCCCCCCC----------CCCCceeeeHHHHHHhhccccceecCccc
Confidence 013445578999999999999999999995 999999999 8999 99999999
Q ss_pred ccCCccccc-----------------cccccEEEcccchhhcchhHHHHHHHH----------HHHHHHHhh-cCCChhh
Q psy6851 229 ELFPYTEFK-----------------DKYGKVRVHLSQKQQSLKLVVIMKEFF----------LNVKDHIRN-LKFPATT 280 (948)
Q Consensus 229 L~FPHHEne-----------------~h~G~l~i~geKMSKSLGN~vti~ef~----------l~ls~hyR~-l~~s~~~ 280 (948)
|.||||||| .|+|||+|.|+||||||+|||||++++ ++|..+||+ |+|++..
T Consensus 268 L~FPHHeNEiAQ~eA~~~~~~wVnYflHtGhL~i~g~KMSKSLkNFiTIke~Lk~~sp~qLRl~fl~~~wr~~ldYs~s~ 347 (586)
T KOG2007|consen 268 LAFPHHENEIAQSEAAFDDSQWVNYFLHTGHLTINGEKMSKSLKNFITIKEALKKYSPRQLRLAFLLHQWRSPLDYSDST 347 (586)
T ss_pred ccCCCcccHHHHHHHHhcCCccceeEEEcCeeeeccchhhhhhccceeHHHHHHhcCHHHHHHHHHHHHhcCcCCchHHH
Confidence 999999997 689999999999999999999999863 458999999 9999874
Q ss_pred hH-------HH-----------------HhhHHHhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcCC
Q psy6851 281 VS-------SF-----------------EKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGT 336 (948)
Q Consensus 281 l~-------~~-----------------~r~~~ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~~ 336 (948)
+. .+ +.|...+.++...+..++.+|+.||||||+||.++.++.+|++.+|.||...
T Consensus 348 m~~a~q~e~~~~~ff~~~~al~~~~~~~~~~~~~e~~l~~~~~~t~~~vh~al~d~~dT~~v~~~~~~lvs~~N~~i~~~ 427 (586)
T KOG2007|consen 348 MEQALQLEKSLNNFFLDVKALLRGAKPFEKLSEKEAELLEDFGKTQTAVHAALCDNFDTPRVMEAIRELVSQGNAYIRES 427 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhccChHHHHHHHhhhhHHHHHHHHHHhccccHHHHHHHHHHHhhhhHHHHHh
Confidence 32 11 1223345566777888999999999999999999999999999999998753
Q ss_pred ---CCHHHHHHHHHHHHHHHhHcccccccccCCCCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q psy6851 337 ---PNQLLLRDIGAYVTKILTVFGCIGDVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQC 413 (948)
Q Consensus 337 ---~~~~lL~~i~~~V~~mL~VLGL~~~~~~ig~~~~~~~~~~ss~eel~~~~Ld~Lv~~R~~iR~~AR~~~~LKLyNSl 413 (948)
+...++..|..||+.++.|||+..... . ....+..++|+|+.|++||..+|+.|+....-.+...|
T Consensus 428 ~~~~~~~~L~~I~~yIt~~l~ifG~~e~~g--------~---q~~~e~~~m~~v~~L~~fr~~vRe~a~~~~~~~iL~l~ 496 (586)
T KOG2007|consen 428 GERPNSALLKAIASYITKLLKIFGLSEGKG--------Q---QYVLEATVMPYVQSLSEFREKVREVAREKKVPEILELC 496 (586)
T ss_pred ccccchHHHHHHHHHHHHHHHHhCCCcccc--------c---ccccccchhHHHHHHHHHHHHHHHHHHhcchHHHHHHh
Confidence 556789999999999999999975111 0 11124456789999999999999999977666899999
Q ss_pred cccccccCCCCCCeeeecCCc
Q psy6851 414 DRLRDEVLPNVGVRLEDIEGK 434 (948)
Q Consensus 414 dr~ReeflP~~G~~V~D~hAR 434 (948)
|.+|+..++..|+.++|.+..
T Consensus 497 d~lR~~~l~~~g~~led~~g~ 517 (586)
T KOG2007|consen 497 DTLRDSDLLELGVRLEDRKGS 517 (586)
T ss_pred HHHHHhhHHHhhhHHHhCCch
Confidence 999999889999999988743
No 9
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=100.00 E-value=6.9e-76 Score=659.03 Aligned_cols=251 Identities=30% Similarity=0.512 Sum_probs=216.9
Q ss_pred hhhhhhhhhhcccccccCCCC-------CCeeeec----CCcceEEehhHHHHHhhhcCCeEEEecccccchHHHHHHHH
Q psy6851 404 IKSTEILNQCDRLRDEVLPNV-------GVRLEDI----EGKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRAR 472 (948)
Q Consensus 404 ~~~LKLyNSldr~ReeflP~~-------G~~V~D~----hARTyVsfDilrR~l~~y~gy~v~~v~NiTDiDDKIi~ra~ 472 (948)
.+.|+||||++|.+++|.|.. |.+|+|. |+|+||.+|||+|+|+ +.||+|+|||||||||||||++|+
T Consensus 15 ~~~l~lyntlt~~~~~f~p~~~v~~YvCGpTvY~~~HIGhart~V~~Dvl~R~lr-~~G~~V~fV~nitD~dDKIi~~A~ 93 (411)
T TIGR03447 15 GPPLRLFDTADGQVRPVEPGPEAGMYVCGITPYDATHLGHAATYLTFDLVNRVWR-DAGHRVHYVQNVTDVDDPLFERAE 93 (411)
T ss_pred CCceEEEECCCCCeeeccCCCcceEEEeCCccCCCcccccchHHHHHHHHHHHHH-hcCCceEEeeCCCchhHHHHHHHH
Confidence 456899999999999999821 4444454 9999999999999999 789999999999999999999999
Q ss_pred hcchhhhhhhhhhhhhhhhHhhHHHHHHHHHhhhccCCChhhHHHHHHHhHhhHHhhhhcccCCCCccccccchhhhhhh
Q psy6851 473 QNYLFEKHVQENEIQTSKILKDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQPEGTINNIKNVTFQKLL 552 (948)
Q Consensus 473 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (948)
+++. +
T Consensus 94 ~~g~----------t----------------------------------------------------------------- 98 (411)
T TIGR03447 94 RDGV----------D----------------------------------------------------------------- 98 (411)
T ss_pred HcCC----------C-----------------------------------------------------------------
Confidence 8742 0
Q ss_pred hhccCCCccccccccCCCCccccccccCCcchhhhhhhhhhhHHHHhhhccCcchhhhhhccCCCccccccccccHHHHH
Q psy6851 553 TAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLDSLHGSSITDNSIFATLPKHWE 632 (948)
Q Consensus 553 ~a~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~ld~~~g~~~~~~~~f~~~~~~~~ 632 (948)
..+++++|+
T Consensus 99 -----------------------------------------------------------------------~~ela~~y~ 107 (411)
T TIGR03447 99 -----------------------------------------------------------------------WRELGTSQI 107 (411)
T ss_pred -----------------------------------------------------------------------HHHHHHHHH
Confidence 013678999
Q ss_pred HHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cccCC----cccccCCCCCccccccCCCCCcccccchhh
Q psy6851 633 AEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KKAES----SSDDDSSSEDEKPAVKAPAKPVAHAAEPAA 707 (948)
Q Consensus 633 ~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~~~g----svyfdvssede~pa~k~~~k~~~~~~~~~~ 707 (948)
++|++||++|||.+|+.+||||+||++|+++|++|+++|+ |+.+| |||||+++
T Consensus 108 ~~f~~d~~~Lni~~~d~~~RaTe~i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv~~---------------------- 165 (411)
T TIGR03447 108 DLFREDMEALRVLPPRDYIGAVESIDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIEA---------------------- 165 (411)
T ss_pred HHHHHHHHHcCCCCCCcccCCCCCHHHHHHHHHHHHHCCCEEecCCCCcCcEEEeccc----------------------
Confidence 9999999999999999999999999999999999999999 98876 89999999
Q ss_pred hhhcCCCCCCCCCCCCCCcCcCCCCcccccccChhhhhhcCCCCCCCCCCCCCcccccCCCCchhhcc--CCCCCCcccc
Q psy6851 708 AKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAA--KPGDLSSQEA 785 (948)
Q Consensus 708 akk~eSSsd~~ssse~e~~a~~~~~k~~~~a~~~~~~k~~~ssSd~~Sssede~p~~k~~~~~~~~~~--~~~~~~~~~~ 785 (948)
+. .|++++..... .+.. +...... .+
T Consensus 166 ---------~~-----------~YG~Ls~~~~~-------------------------------~~~~~~~~~~~~~-~~ 193 (411)
T TIGR03447 166 ---------TE-----------QFGYESGYDRA-------------------------------TMLELFAERGGDP-DR 193 (411)
T ss_pred ---------hh-----------ccccccCCCHH-------------------------------HHHhhhcccccCc-cc
Confidence 54 68998642111 1111 1110111 13
Q ss_pred ccCCCCCCcceeeccCCCCCcccCCCCCCCCchhHHHHHHHHhhcCCCceeecCCCCCCCCCChhHHHHHhccCCC-C--
Q psy6851 786 SEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLPTH-D-- 862 (948)
Q Consensus 786 ~~K~~~~DfaLwk~~k~~ep~w~spwg~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FPHH~ne~aq~e~~~~~-~-- 862 (948)
++|+||.||||||++++|||+|+||||+||||||||||||+.++||.+|||||||+||+||||||||||++|++++ +
T Consensus 194 ~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~Dih~GG~DLifpHheneiaq~~A~~g~~~~~ 273 (411)
T TIGR03447 194 PGKRDPLDALLWRAAREGEPSWDSPFGPGRPGWHIECSAIATNRLGAGFDIQGGGSDLIFPHHEFSAAHAEAATGVRRMA 273 (411)
T ss_pred ccCCCCcccceeCCCCCCCCCccCCCCCCCChhHHHHHHHHHHHcCCceecccCcccccccchHhHHHHHHHhcCCCCcc
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999987 3
Q ss_pred ----------CCCccccchhhhH
Q psy6851 863 ----------QEGKELSKGLAKK 875 (948)
Q Consensus 863 ----------~~g~kmsKsl~n~ 875 (948)
++|+|||||||||
T Consensus 274 ~~w~H~g~l~~~G~KMSKSlGN~ 296 (411)
T TIGR03447 274 RHYVHAGMIGLDGEKMSKSLGNL 296 (411)
T ss_pred eEEEECCEECcCCCCccCcCCCC
Confidence 8999999999999
No 10
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=7.5e-75 Score=663.57 Aligned_cols=247 Identities=32% Similarity=0.530 Sum_probs=216.0
Q ss_pred hhhhhhhhcccccccCCCC---------CCeeeec----CCcceEEehhHHHHHhhhcCCeEEEecccccc---------
Q psy6851 406 STEILNQCDRLRDEVLPNV---------GVRLEDI----EGKSYITFDILRRILSEYFNYNITYAMNITDI--------- 463 (948)
Q Consensus 406 ~LKLyNSldr~ReeflP~~---------G~~V~D~----hARTyVsfDilrR~l~~y~gy~v~~v~NiTDi--------- 463 (948)
+|+||||+++.+++|.|.. |++|+|. |+|+||+||||+|+|+ |+||+|+||||||||
T Consensus 2 ~l~lyntlt~~ke~f~p~~~~~v~mYvCGpTvy~~~HiGhar~~v~~Dvl~R~l~-~~G~~V~~v~NiTDv~hl~~~~De 80 (490)
T PRK14536 2 ALRLYNTLGRQQEEFQPIEHGHVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLH-FLGYRVTHVMNITDVGHLTDDADS 80 (490)
T ss_pred ceEEEecCCCCeeccccCCCCceEEEeeCCccCCCcccchhHHHHHHHHHHHHHH-hcCCceEEEEeeccccccccCCcC
Confidence 4799999999999999876 4455555 9999999999999998 999999999999999
Q ss_pred -hHHHHHHHHhcchhhhhhhhhhhhhhhhHhhHHHHHHHHHhhhccCCChhhHHHHHHHhHhhHHhhhhcccCCCCcccc
Q psy6851 464 -DDKIIKRARQNYLFEKHVQENEIQTSKILKDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQPEGTINN 542 (948)
Q Consensus 464 -DDKIi~ra~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (948)
|||||++|++++. +
T Consensus 81 ~ddKii~~A~~~g~----------~------------------------------------------------------- 95 (490)
T PRK14536 81 GEDKMVKSAQEHGK----------S------------------------------------------------------- 95 (490)
T ss_pred CChHHHHHHHHcCC----------C-------------------------------------------------------
Confidence 9999999987642 0
Q ss_pred ccchhhhhhhhhccCCCccccccccCCCCccccccccCCcchhhhhhhhhhhHHHHhhhccCcchhhhhhccCCCccccc
Q psy6851 543 IKNVTFQKLLTAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLDSLHGSSITDNS 622 (948)
Q Consensus 543 ~~~~~~~~~~~a~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~ld~~~g~~~~~~~ 622 (948)
T Consensus 96 -------------------------------------------------------------------------------- 95 (490)
T PRK14536 96 -------------------------------------------------------------------------------- 95 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccHHHHHHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cccCCcccccCCCCCccccccCCCCCccc
Q psy6851 623 IFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KKAESSSDDDSSSEDEKPAVKAPAKPVAH 701 (948)
Q Consensus 623 ~f~~~~~~~~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvssede~pa~k~~~k~~~~ 701 (948)
..+++++|+++|++||++|||.+|+++||||+||++|+++|++|+++|+ |+.+||||||+++
T Consensus 96 -~~e~a~~~~~~f~~d~~~Lni~~~~~~~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~~---------------- 158 (490)
T PRK14536 96 -VLEIAAHYTAAFFRDTARLNIERPSIVCNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRT---------------- 158 (490)
T ss_pred -HHHHHHHHHHHHHHHHHHcCCCCCceecCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCCc----------------
Confidence 0146789999999999999999999999999999999999999999999 9999999999988
Q ss_pred ccchhhhhhcCCCCCCCCCCCCCCcCcCCCCcccccccChhhhhhcCCCCCCCCCCCCCcccccCCCCchhhccCCCCCC
Q psy6851 702 AAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLS 781 (948)
Q Consensus 702 ~~~~~~akk~eSSsd~~ssse~e~~a~~~~~k~~~~a~~~~~~k~~~ssSd~~Sssede~p~~k~~~~~~~~~~~~~~~~ 781 (948)
+. .|++++..... .+..|.. +
T Consensus 159 ---------------~~-----------~YG~Ls~~~~~-------------------------------~l~~g~~-v- 179 (490)
T PRK14536 159 ---------------FP-----------SYGSLASAAVE-------------------------------DLQAGAR-I- 179 (490)
T ss_pred ---------------cc-----------chhhhcCCCHH-------------------------------HhhcCCc-C-
Confidence 53 69988643211 1222221 1
Q ss_pred ccccccCCCCCCcceeeccC--CC-CCcccCCCCCCCCchhHHHHHHHHhhcCCCceeecCCCCCCCCCChhHHHHHhcc
Q psy6851 782 SQEASEKRSPNDFALWKKSK--AG-EPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGL 858 (948)
Q Consensus 782 ~~~~~~K~~~~DfaLwk~~k--~~-ep~w~spwg~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FPHH~ne~aq~e~~ 858 (948)
+.+..|+||.||||||+++ ++ +|.|+||||+||||||||||||+.+|||.+|||||||+||+|||||||||||||+
T Consensus 180 -~~~~~K~np~DFaLWK~~~~~~~~~~~W~SpWG~GRPGWHIECsaMs~~~lg~~~DIH~GG~DliFPHHeneiAqs~a~ 258 (490)
T PRK14536 180 -EHDTNKRNPHDFVLWFTRSKFENHALTWDSPWGRGYPGWHIECSAMSMKYLGEQCDIHIGGVDHIRVHHTNEIAQCEAA 258 (490)
T ss_pred -CCCCCCCCchhchhcccccCCCCCCCcccCCCCCCCCChHHHHHHHHHHHcCCceeEEeccccCCCcchhhHHHHHHHh
Confidence 1245899999999999865 44 6899999999999999999999999999999999999999999999999999999
Q ss_pred CCCC------------CCCccccchhhhH
Q psy6851 859 PTHD------------QEGKELSKGLAKK 875 (948)
Q Consensus 859 ~~~~------------~~g~kmsKsl~n~ 875 (948)
+|++ ++|+|||||+|||
T Consensus 259 ~g~~~~~~w~h~g~l~~~g~KMSKSlGN~ 287 (490)
T PRK14536 259 TGKPWVRYWLHHEFLLMNKGKMSKSAGQF 287 (490)
T ss_pred cCCCcceEEEEcCEEeecCccccccCCCc
Confidence 8876 8999999999999
No 11
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3e-73 Score=648.15 Aligned_cols=248 Identities=30% Similarity=0.439 Sum_probs=217.9
Q ss_pred hhhhhhhhhcccccccCCCC-------CCeeeec----CCcceEEehhHHHHHhhhcCCeEEEecccccc----------
Q psy6851 405 KSTEILNQCDRLRDEVLPNV-------GVRLEDI----EGKSYITFDILRRILSEYFNYNITYAMNITDI---------- 463 (948)
Q Consensus 405 ~~LKLyNSldr~ReeflP~~-------G~~V~D~----hARTyVsfDilrR~l~~y~gy~v~~v~NiTDi---------- 463 (948)
++|+||||++|.+++|.|.. |++|+|. |+|+||+||||+|+|+ +.||+|+||||||||
T Consensus 1 ~~l~lynTltr~ke~f~p~~~v~mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~-~~G~~V~~v~NiTDIghltg~~D~g 79 (481)
T PRK14534 1 MLLKLYNTKTKDLSELKNFSDVKVYACGPTVYNYAHIGNFRTYIFEDLLIKSLR-LLKYNVNYAMNITDIGHLTGDFDDG 79 (481)
T ss_pred CceEEEEcCCCCeeecccCCceEEEeCCCCCCCCCCccchhHHHHHHHHHHHHH-HcCCceEEEEeccccccccCCccCC
Confidence 35799999999999998863 7777776 9999999999999999 899999999999999
Q ss_pred hHHHHHHHHhcchhhhhhhhhhhhhhhhHhhHHHHHHHHHhhhccCCChhhHHHHHHHhHhhHHhhhhcccCCCCccccc
Q psy6851 464 DDKIIKRARQNYLFEKHVQENEIQTSKILKDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQPEGTINNI 543 (948)
Q Consensus 464 DDKIi~ra~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (948)
|||||++|++++. +
T Consensus 80 ddKIi~~A~~~g~----------~-------------------------------------------------------- 93 (481)
T PRK14534 80 EDKVVKAARERGL----------T-------------------------------------------------------- 93 (481)
T ss_pred CcHHHHHHHHcCC----------C--------------------------------------------------------
Confidence 9999999998752 0
Q ss_pred cchhhhhhhhhccCCCccccccccCCCCccccccccCCcchhhhhhhhhhhHHHHhhhccCcchhhhhhccCCCcccccc
Q psy6851 544 KNVTFQKLLTAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLDSLHGSSITDNSI 623 (948)
Q Consensus 544 ~~~~~~~~~~a~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~ld~~~g~~~~~~~~ 623 (948)
T Consensus 94 -------------------------------------------------------------------------------- 93 (481)
T PRK14534 94 -------------------------------------------------------------------------------- 93 (481)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccHHHHHHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cccCCcccccCCCCCccccccCCCCCcccc
Q psy6851 624 FATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KKAESSSDDDSSSEDEKPAVKAPAKPVAHA 702 (948)
Q Consensus 624 f~~~~~~~~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvssede~pa~k~~~k~~~~~ 702 (948)
..+++++|++.|++||++|||.+|+++||||+||++||++|++|+++|+ |+.+|+||||+++
T Consensus 94 ~~e~a~~~~~~f~~d~~~Lni~~~~~~p~atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~----------------- 156 (481)
T PRK14534 94 VYEISRFFTEAFFDDCKKLNIVYPDKVLVASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSC----------------- 156 (481)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCceecCccchHHHHHHHHHHHHHCCCEEEECCeEEEeccc-----------------
Confidence 0136789999999999999999999999999999999999999999999 9999999999998
Q ss_pred cchhhhhhcCCCCCCCCCCCCCCcCcCCCCcccccccChhhhhhcCCCCCCCCCCCCCcccccCCCCchhhc--cCCCCC
Q psy6851 703 AEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQA--AKPGDL 780 (948)
Q Consensus 703 ~~~~~akk~eSSsd~~ssse~e~~a~~~~~k~~~~a~~~~~~k~~~ssSd~~Sssede~p~~k~~~~~~~~~--~~~~~~ 780 (948)
+. .|++++..... .+. .+.+
T Consensus 157 --------------~~-----------~YG~ls~~~l~-------------------------------~l~~~~~~~-- 178 (481)
T PRK14534 157 --------------FK-----------SYGQMAGINLN-------------------------------DFKDMSVSR-- 178 (481)
T ss_pred --------------cc-----------chhhhcCCCHH-------------------------------HHhhhccCc--
Confidence 53 68888642110 111 1211
Q ss_pred CccccccCCCCCCcceeecc---CCCCCcccCCCCCCCCchhHHHHHHHHhhcCCCceeecCCCCCCCCCChhHHHHHhc
Q psy6851 781 SSQEASEKRSPNDFALWKKS---KAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEG 857 (948)
Q Consensus 781 ~~~~~~~K~~~~DfaLwk~~---k~~ep~w~spwg~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FPHH~ne~aq~e~ 857 (948)
...+..|+||.||+|||.+ ++++|.|+||||.||||||||||||+.++||.+|||||||+||+|||||||+|||+|
T Consensus 179 -v~~~~~K~np~DFaLWK~~~~~~~~~~~w~spWG~GrPgWHiECsam~~~~lg~~~DIH~GG~DliFPHHene~Aqs~a 257 (481)
T PRK14534 179 -VEIDKSKRNKSDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKSTLDIHLGGVDHIGVHHINEIAIAEC 257 (481)
T ss_pred -CCcccCCCCcccchhcCcCCcCCCCCCeecCCCCCcCCcHHHHHHHHHHHHcCCcceEEecccccCCCcchhHHHHHhh
Confidence 1123579999999999975 899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC------------CCCccccchhhhH
Q psy6851 858 LPTHD------------QEGKELSKGLAKK 875 (948)
Q Consensus 858 ~~~~~------------~~g~kmsKsl~n~ 875 (948)
++|.+ ++|+|||||+|||
T Consensus 258 ~~g~~~~~~W~H~g~l~~~g~KMSKSlGN~ 287 (481)
T PRK14534 258 YLNKKWCDMFVHGEFLIMEYEKMSKSNNNF 287 (481)
T ss_pred hcCCCcceEEEEecEEEecCceecccCCCc
Confidence 98766 8999999999999
No 12
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=9.8e-73 Score=630.34 Aligned_cols=231 Identities=31% Similarity=0.545 Sum_probs=201.7
Q ss_pred CCCeeeec----CCcceEEehhHHHHHhhhcCCeEEEecccccchHHHHHHHHhcchhhhhhhhhhhhhhhhHhhHHHHH
Q psy6851 424 VGVRLEDI----EGKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQTSKILKDIGEVM 499 (948)
Q Consensus 424 ~G~~V~D~----hARTyVsfDilrR~l~~y~gy~v~~v~NiTDiDDKIi~ra~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 499 (948)
.|++|+|. |+|+||+||||+|+|+ +.||+|.|||||||||||||++|++++. +
T Consensus 15 CGpTvY~~~HIGh~r~~V~~Dvl~R~lr-~~G~~V~~V~nitD~ddKIi~~A~~~G~----------~------------ 71 (384)
T PRK12418 15 CGITPYDATHLGHAATYLAFDLVNRVWR-DAGHDVHYVQNVTDVDDPLLERAARDGV----------D------------ 71 (384)
T ss_pred cCCCCCCCCccchhHHHHHHHHHHHHHH-HcCCceEEEEecCCcchHHHHHHHHcCC----------C------------
Confidence 57788866 9999999999999999 8999999999999999999999998753 0
Q ss_pred HHHHhhhccCCChhhHHHHHHHhHhhHHhhhhcccCCCCccccccchhhhhhhhhccCCCccccccccCCCCcccccccc
Q psy6851 500 GAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQPEGTINNIKNVTFQKLLTAVRDPFSDWLDSLHGSSITDNSIFAT 579 (948)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~~~~~~~~~~~ 579 (948)
T Consensus 72 -------------------------------------------------------------------------------- 71 (384)
T PRK12418 72 -------------------------------------------------------------------------------- 71 (384)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcchhhhhhhhhhhHHHHhhhccCcchhhhhhccCCCccccccccccHHHHHHHHHHHHhhcCCCCCCeeecccccHHH
Q psy6851 580 LPKHWEAEFHKDMADLNKLLTAVRDPLSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPE 659 (948)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~ld~~~g~~~~~~~~f~~~~~~~~~~f~~dm~~L~v~~p~~~~rvse~i~~ 659 (948)
..+++++|+++|++||++|||++|+.+||||+||++
T Consensus 72 --------------------------------------------~~e~a~~~~~~f~~d~~~Lni~~~~~~~raTe~i~~ 107 (384)
T PRK12418 72 --------------------------------------------WRDLAEREIALFREDMEALRVLPPRDYVGAVESIPE 107 (384)
T ss_pred --------------------------------------------HHHHHHHHHHHHHHHHHHhCCCCCCccccCCCCHHH
Confidence 013678999999999999999999999999999999
Q ss_pred HHHHHhCcccCCC-cccCC----cccccCCCCCccccccCCCCCcccccchhhhhhcCCCCCCCCCCCCCCcCcCCCCcc
Q psy6851 660 IVASAQTPKPAAA-KKAES----SSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKP 734 (948)
Q Consensus 660 ii~~i~~l~~~g~-Y~~~g----svyfdvssede~pa~k~~~k~~~~~~~~~~akk~eSSsd~~ssse~e~~a~~~~~k~ 734 (948)
|+++|++|+++|+ |+.++ |||||+++ +. .|+++
T Consensus 108 ~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~~-------------------------------~~-----------~YG~l 145 (384)
T PRK12418 108 VVELVEKLLASGAAYVVDDEEYPDVYFSVDA-------------------------------TP-----------QFGYE 145 (384)
T ss_pred HHHHHHHHHHCCCEEEeCCCCCccEEEecCc-------------------------------hh-----------hcccc
Confidence 9999999999999 98877 99999998 43 68888
Q ss_pred cccccChhhhhhcCCCCCCCCCCCCCcccccCCCCchhhcc--CCCCCCccccccCCCCCCcceeeccCCCCCcccCCCC
Q psy6851 735 VAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAA--KPGDLSSQEASEKRSPNDFALWKKSKAGEPWWSSPWG 812 (948)
Q Consensus 735 ~~~a~~~~~~k~~~ssSd~~Sssede~p~~k~~~~~~~~~~--~~~~~~~~~~~~K~~~~DfaLwk~~k~~ep~w~spwg 812 (948)
+..... .+.. +...... .+++||||.||||||++++|||.|+||||
T Consensus 146 s~~~~~-------------------------------~~~~~~~~~~~~~-~~~~K~~p~DFaLWK~~~~~~~~w~spwG 193 (384)
T PRK12418 146 SGYDRA-------------------------------TMLELFAERGGDP-DRPGKRDPLDALLWRAARPGEPSWPSPFG 193 (384)
T ss_pred cCCCHH-------------------------------HHHhhhcccccCc-ccccCCCcccceeeccCCCCCCcccCCCC
Confidence 642110 1111 1110011 13579999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHhhcCCCceeecCCCCCCCCCChhHHHHHhccCCC-C------------CCCccccchhhhH
Q psy6851 813 EGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLPTH-D------------QEGKELSKGLAKK 875 (948)
Q Consensus 813 ~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FPHH~ne~aq~e~~~~~-~------------~~g~kmsKsl~n~ 875 (948)
+|||||||||||||.++||.+||||+||+||+||||||||||++|++++ + ++|+|||||||||
T Consensus 194 ~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHeneiaq~~a~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~ 269 (384)
T PRK12418 194 PGRPGWHIECSAIALNRLGSGFDIQGGGSDLIFPHHEFSAAHAEAATGERRFARHYVHAGMIGLDGEKMSKSRGNL 269 (384)
T ss_pred CCCChhHHHHHHHHHHHcCCCcccccCccccccchhHhHHHHHHHhcCCCCcceEEEECCEECCCCCcccCcCCCc
Confidence 9999999999999999999999999999999999999999999999987 3 8999999999999
No 13
>PLN02946 cysteine-tRNA ligase
Probab=100.00 E-value=4.8e-68 Score=613.57 Aligned_cols=329 Identities=21% Similarity=0.277 Sum_probs=260.3
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeeeCCcEEEeeccCCCCC
Q psy6851 89 QEAKEAQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQP 166 (948)
Q Consensus 89 ~~~~a~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~f~~~g 166 (948)
-...|.+.|+++.++++++++.|.++|. ||.+|+++||||+||++|| +||++|++|||||+.+|+|||||++|++||
T Consensus 132 Ii~~A~~~g~~~~ela~~y~~~f~~d~~~LnI~~p~~~pratehi~~ii-~~i~~Li~kG~aY~~~g~VYFdv~~f~~YG 210 (557)
T PLN02946 132 IIARANELGEDPISLSRRYCEEFLSDMAYLHCLPPSVEPRVSDHIPQII-DMIKQILDNGCAYRVDGDVYFSVDKFPEYG 210 (557)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHCCCCCCCeecCcchhHHHHH-HHHHHHHHCCCEEEECCeEEEecCcchhhh
Confidence 3455667788888888888889999988 9999999999999999999 799999999999999999999999999986
Q ss_pred C----------------CCccccCCccccccccccCCCCcCCCCCCCcccCCCCCCCCCCcceeEe-------eccC-cc
Q psy6851 167 N----------------HYYAKLVPEAYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIFF-------YGTR-ET 222 (948)
Q Consensus 167 ~----------------~~YgKL~P~DFaLWK~ak~gEp~wespWg~~~~~m~~~~~GRPGWHIEc-------LG~~-di 222 (948)
. .+-.|.+|.||+|||++++|||.|+||||. ||||||||| ||.+ ||
T Consensus 211 ~Ls~~~l~~l~~g~rv~~~~~K~np~DFaLWK~~k~ge~~W~SPWG~----------GRPGWHIECSaMs~~~lG~~~DI 280 (557)
T PLN02946 211 KLSGRKLEDNRAGERVAVDSRKKNPADFALWKAAKEGEPFWDSPWGP----------GRPGWHIECSAMSAAYLGHSFDI 280 (557)
T ss_pred hcCCCChhHhhcCCCCCcccccCCccccceeccCCCCCCCccCCCCC----------CCCcHHHHHHHHHHHHcCCCeeE
Confidence 4 123678899999999999999999999995 999999999 9998 99
Q ss_pred ccccccccCCccccc----------------cccccEEEcccchhhcchhHHHHHHHH----------HHHHHHHhh-cC
Q psy6851 223 GICRQDELFPYTEFK----------------DKYGKVRVHLSQKQQSLKLVVIMKEFF----------LNVKDHIRN-LK 275 (948)
Q Consensus 223 h~GG~DL~FPHHEne----------------~h~G~l~i~geKMSKSLGN~vti~ef~----------l~ls~hyR~-l~ 275 (948)
|+||+||+||||||| +|+|+|+++|+|||||+||++++++++ .++++|||+ ++
T Consensus 281 H~GG~DL~FPHHENEiAQsea~~g~~~a~yW~H~G~v~~~G~KMSKSlGN~itl~dll~~y~~dalR~~lLs~hyr~~l~ 360 (557)
T PLN02946 281 HGGGMDLVFPHHENEIAQSCAACCDSNISYWIHNGFVTVDSEKMSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYRSPIN 360 (557)
T ss_pred eccccccCCCcccchHHHHHHHhCCCCCceeeEeeEEEeCCCCcCCcCCCcCCHHHHHHhcCccceeeeeeccCCCCCcE
Confidence 999999999999997 688999999999999999999999873 347899999 99
Q ss_pred CChhhhH----HHHhhHHHhH--------------------HHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHh
Q psy6851 276 FPATTVS----SFEKWTQADL--------------------ELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNI 331 (948)
Q Consensus 276 ~s~~~l~----~~~r~~~ad~--------------------eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~ 331 (948)
|+++.|. .+.++...-. .+...+..+.+.|.+||+||||||.||++||++++.+|.
T Consensus 361 fs~e~L~~a~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~Al~DDlntp~Al~~l~~~vk~~N~ 440 (557)
T PLN02946 361 YSDVQLESASERIFYIYQTLHDCEESLQQHDSTFEKDSVPPDTLNCINKFHDEFVTSMSDDLHTPVALAALSEPLKTIND 440 (557)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 9998765 2222221100 011234457789999999999999999999999999999
Q ss_pred hhcCCC------CHHHHHHHHHHHHHHHhHcccccccccCCCCCC--CCCCCCcchhhhhhHHHHHHHHHHHHHHHHHhh
Q psy6851 332 YLRGTP------NQLLLRDIGAYVTKILTVFGCIGDVKNIGFPLG--GTGVESTNLEELVLPYLTILSEFRDNIRTEARL 403 (948)
Q Consensus 332 yLd~~~------~~~lL~~i~~~V~~mL~VLGL~~~~~~ig~~~~--~~~~~~ss~eel~~~~Ld~Lv~~R~~iR~~AR~ 403 (948)
+++... ....+..+..++..|++||||....... +... ........+.+ ..|+.|++.|.++|+.
T Consensus 441 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vLGl~~~~~~~-~~~~~~~~~~~~~~~~~---~~i~~li~~R~~aR~~--- 513 (557)
T PLN02946 441 LLHTRKGKKQEKRLESLAALEKKIRDVLSVLGLMPTSYSE-ALQQLREKALRRAKLTE---EQVLQKIEERTVARKN--- 513 (557)
T ss_pred HhhhcccccccchHHHHHHHHHHHHHHHHHcCCCchhhhh-hhhhhhhhhhhcccCCH---HHHHHHHHHHHHHHhc---
Confidence 886431 1123555677899999999995421000 0000 00000000110 1267788876666666
Q ss_pred hhhhhhhhhhcccccccCCCCCCeeeecCCcceEEeh
Q psy6851 404 IKSTEILNQCDRLRDEVLPNVGVRLEDIEGKSYITFD 440 (948)
Q Consensus 404 ~~~LKLyNSldr~ReeflP~~G~~V~D~hARTyVsfD 440 (948)
|.|..+|++|+++ ...|+.|+|+..+|.|..-
T Consensus 514 ----Kdf~~AD~IR~~L-~~~Gi~l~Dt~~Gt~w~~~ 545 (557)
T PLN02946 514 ----KEYEKSDAIRKDL-AAVGIALMDSPDGTTWRPA 545 (557)
T ss_pred ----cCHHHHHHHHHHH-HHCCCEEEECCCCceEEEc
Confidence 9999999999998 6889999999777877643
No 14
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=100.00 E-value=2.3e-68 Score=610.10 Aligned_cols=246 Identities=41% Similarity=0.652 Sum_probs=216.2
Q ss_pred hhhhhhhcccccccCCCCCCeee---------ec----CCcceEEehhHHHHHhhhcCCeEEEecccccchHHHHHHHHh
Q psy6851 407 TEILNQCDRLRDEVLPNVGVRLE---------DI----EGKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQ 473 (948)
Q Consensus 407 LKLyNSldr~ReeflP~~G~~V~---------D~----hARTyVsfDilrR~l~~y~gy~v~~v~NiTDiDDKIi~ra~~ 473 (948)
|+||||++|.+++|.|..+.+|. +. |+|+||++||++|+|+ +.||+|+|||||||||||||.+|++
T Consensus 1 l~lyntlt~~~e~f~p~~~~~v~~yvcgptvy~~~HiGhar~~v~~Dvl~R~lr-~~G~~V~~v~n~tD~ddkIi~~A~~ 79 (465)
T TIGR00435 1 LKLYNTLTRQKEEFEPLVQGKVKMYVCGPTVYDYCHIGHARTAIVFDVLRRYLR-YLGYKVQYVQNITDIDDKIIKRARE 79 (465)
T ss_pred CeeEeCCCCCeeccccCCCCcceEEEecCccCCCcccccchHHHHHHHHHHHHH-HcCCcEEEEEeeCCccHHHHHHHHH
Confidence 57999999999999987755444 43 9999999999999999 8999999999999999999999998
Q ss_pred cchhhhhhhhhhhhhhhhHhhHHHHHHHHHhhhccCCChhhHHHHHHHhHhhHHhhhhcccCCCCccccccchhhhhhhh
Q psy6851 474 NYLFEKHVQENEIQTSKILKDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQPEGTINNIKNVTFQKLLT 553 (948)
Q Consensus 474 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (948)
+++ .+
T Consensus 80 ~g~-------~~-------------------------------------------------------------------- 84 (465)
T TIGR00435 80 NGE-------SV-------------------------------------------------------------------- 84 (465)
T ss_pred cCC-------CH--------------------------------------------------------------------
Confidence 753 00
Q ss_pred hccCCCccccccccCCCCccccccccCCcchhhhhhhhhhhHHHHhhhccCcchhhhhhccCCCccccccccccHHHHHH
Q psy6851 554 AVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLDSLHGSSITDNSIFATLPKHWEA 633 (948)
Q Consensus 554 a~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~ld~~~g~~~~~~~~f~~~~~~~~~ 633 (948)
.+++++|.+
T Consensus 85 -----------------------------------------------------------------------~e~a~~~~~ 93 (465)
T TIGR00435 85 -----------------------------------------------------------------------YEVSERFIE 93 (465)
T ss_pred -----------------------------------------------------------------------HHHHHHHHH
Confidence 135789999
Q ss_pred HHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cccC-CcccccCCCCCccccccCCCCCcccccchhhhhhc
Q psy6851 634 EFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KKAE-SSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKA 711 (948)
Q Consensus 634 ~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~~~-gsvyfdvssede~pa~k~~~k~~~~~~~~~~akk~ 711 (948)
.|++||++|||.+|+.++|+|+|++.|+++|++|+++|+ |..+ |+||||+++
T Consensus 94 ~f~~dl~~LgI~~d~~~~raT~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~-------------------------- 147 (465)
T TIGR00435 94 AYFEDMKALNVLPPDLEPRATEHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSK-------------------------- 147 (465)
T ss_pred HHHHHHHHhCCCCCcCCccccccHHHHHHHHHHHHHCCCEEEecCCcEEEeccc--------------------------
Confidence 999999999999999999999999999999999999999 9988 999999988
Q ss_pred CCCCCCCCCCCCCCcCcCCCCcccccccChhhhhhcCCCCCCCCCCCCCcccccCCCCchhhccCCCCCCccccccCCCC
Q psy6851 712 ESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRSP 791 (948)
Q Consensus 712 eSSsd~~ssse~e~~a~~~~~k~~~~a~~~~~~k~~~ssSd~~Sssede~p~~k~~~~~~~~~~~~~~~~~~~~~~K~~~ 791 (948)
+. .|++++..... .+..|.+. ..+..|+||
T Consensus 148 -----~~-----------~yG~ls~~~~~-------------------------------~~~~~~~~---~~~~~K~~p 177 (465)
T TIGR00435 148 -----FK-----------DYGKLSKQDLD-------------------------------QLEAGARV---DVDEAKRNK 177 (465)
T ss_pred -----cc-----------hhccCCCCCHH-------------------------------HHhccccc---CcccccCCC
Confidence 43 68998642110 12223221 113569999
Q ss_pred CCcceeeccCCCCCcccCCCCCCCCchhHHHHHHHHhhcCCCceeecCCCCCCCCCChhHHHHHhccCCCC---------
Q psy6851 792 NDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLPTHD--------- 862 (948)
Q Consensus 792 ~DfaLwk~~k~~ep~w~spwg~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~--------- 862 (948)
.||||||++++|||.|+||||.||||||||||||+.++||.++|||+||+||+||||+||+|||+|++|.+
T Consensus 178 ~DF~Lwk~~~~~~~~w~spwG~grpgWhiecsam~~~~lg~~~Dih~gG~Dl~fpHhene~aqs~a~~g~~~~~~~~h~g 257 (465)
T TIGR00435 178 LDFVLWKSSKEGEPKWDSPWGKGRPGWHIECSAMNDKYLGDQIDIHGGGVDLIFPHHENEIAQSEAAFGKQLAKYWMHNG 257 (465)
T ss_pred CCceeeCCCCCCCCCCcCCCCCCCCCcHhHHHHHHHHhcCCCceeeccccccccchHHHHHHHHHHhcCCCCCcEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred ---CCCccccchhhhH
Q psy6851 863 ---QEGKELSKGLAKK 875 (948)
Q Consensus 863 ---~~g~kmsKsl~n~ 875 (948)
++|+|||||+|||
T Consensus 258 ~v~~~g~KMSKS~GN~ 273 (465)
T TIGR00435 258 FLMIDNEKMSKSLGNF 273 (465)
T ss_pred EEEecCccccccCCCc
Confidence 7999999999999
No 15
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=100.00 E-value=2.5e-68 Score=609.70 Aligned_cols=248 Identities=42% Similarity=0.706 Sum_probs=217.6
Q ss_pred hhhhhhhhhcccccccCCCCCCeee---------ec----CCcceEEehhHHHHHhhhcCCeEEEecccccchHHHHHHH
Q psy6851 405 KSTEILNQCDRLRDEVLPNVGVRLE---------DI----EGKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRA 471 (948)
Q Consensus 405 ~~LKLyNSldr~ReeflP~~G~~V~---------D~----hARTyVsfDilrR~l~~y~gy~v~~v~NiTDiDDKIi~ra 471 (948)
++|+||||+++.+++|.|..+..|. +. |+|+||.+|||+|+|+ +.||+|.|||||||||||||++|
T Consensus 1 ~~l~~~ntl~~~~~~f~p~~~~~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr-~~G~~V~~v~~~tD~ddki~~~A 79 (463)
T PRK00260 1 MMLKIYNTLTRQKEEFKPLEPGKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLR-YLGYKVTYVRNITDIDDKIIKRA 79 (463)
T ss_pred CceEEEECCCCceeecccCCCCcceEEEeCCccCCCcccccchhHHHHHHHHHHHH-hcCCceEEeecCCCCcHHHHHHH
Confidence 4689999999999999987654443 33 9999999999999999 99999999999999999999999
Q ss_pred HhcchhhhhhhhhhhhhhhhHhhHHHHHHHHHhhhccCCChhhHHHHHHHhHhhHHhhhhcccCCCCccccccchhhhhh
Q psy6851 472 RQNYLFEKHVQENEIQTSKILKDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQPEGTINNIKNVTFQKL 551 (948)
Q Consensus 472 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (948)
++.+. .
T Consensus 80 ~~~g~----------~---------------------------------------------------------------- 85 (463)
T PRK00260 80 NEEGE----------S---------------------------------------------------------------- 85 (463)
T ss_pred HHcCC----------C----------------------------------------------------------------
Confidence 87631 0
Q ss_pred hhhccCCCccccccccCCCCccccccccCCcchhhhhhhhhhhHHHHhhhccCcchhhhhhccCCCccccccccccHHHH
Q psy6851 552 LTAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLDSLHGSSITDNSIFATLPKHW 631 (948)
Q Consensus 552 ~~a~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~ld~~~g~~~~~~~~f~~~~~~~ 631 (948)
..+++++|
T Consensus 86 ------------------------------------------------------------------------~~e~~~~~ 93 (463)
T PRK00260 86 ------------------------------------------------------------------------IKELTERY 93 (463)
T ss_pred ------------------------------------------------------------------------HHHHHHHH
Confidence 01467899
Q ss_pred HHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cccCCcccccCCCCCccccccCCCCCcccccchhhhhh
Q psy6851 632 EAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKK 710 (948)
Q Consensus 632 ~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvssede~pa~k~~~k~~~~~~~~~~akk 710 (948)
+++|.+||++|||.+|+.++|+|+|+++|+++|++|+++|+ |..+|+||||+++
T Consensus 94 ~~~f~~~~~~Lgi~~~d~~~r~t~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~------------------------- 148 (463)
T PRK00260 94 IAAFHEDMDALNVLPPDIEPRATEHIPEIIELIERLIDKGHAYEADGDVYFDVRK------------------------- 148 (463)
T ss_pred HHHHHHHHHHcCCCCCCccccccccHHHHHHHHHHHHHCCCEEEecCeEEEeccc-------------------------
Confidence 99999999999999999999999999999999999999999 9999999999998
Q ss_pred cCCCCCCCCCCCCCCcCcCCCCcccccccChhhhhhcCCCCCCCCCCCCCcccccCCCCchhhccCCCCCCccccccCCC
Q psy6851 711 AESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRS 790 (948)
Q Consensus 711 ~eSSsd~~ssse~e~~a~~~~~k~~~~a~~~~~~k~~~ssSd~~Sssede~p~~k~~~~~~~~~~~~~~~~~~~~~~K~~ 790 (948)
+. .|++++..... .+..|.. ...+..|+|
T Consensus 149 ------~~-----------~yg~ls~~~~~-------------------------------~~~~~~~---~~~~~~K~~ 177 (463)
T PRK00260 149 ------FP-----------DYGKLSGRNLD-------------------------------ELQAGAR---VEVAEEKRD 177 (463)
T ss_pred ------cc-----------ccccCCCCCHH-------------------------------HHhccCc---CCcccCCCC
Confidence 53 69998753211 1222211 112457999
Q ss_pred CCCcceeeccCCCCCcccCCCCCCCCchhHHHHHHHHhhcCCCceeecCCCCCCCCCChhHHHHHhccCCCC--------
Q psy6851 791 PNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLPTHD-------- 862 (948)
Q Consensus 791 ~~DfaLwk~~k~~ep~w~spwg~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~-------- 862 (948)
|.||||||++++|+|.|+||||+||||||||||||+.++||.+||||+||+||+||||+||||||+|++|.+
T Consensus 178 ~~DF~Lwk~~~~~~~~w~s~~g~grpgWhiecsam~~~~lg~~~Dih~gG~DlifpHh~neiaqs~a~~g~p~~~~w~H~ 257 (463)
T PRK00260 178 PLDFALWKAAKPGEPSWESPWGKGRPGWHIECSAMSTKYLGETFDIHGGGADLIFPHHENEIAQSEAATGKPFANYWMHN 257 (463)
T ss_pred ccccceecCCCCCCCCCCCCCCCCCCChhHHHHHHHHHhcCCCcceecCccccCCCchHhHHHHHHHhcCCCcceEEEEc
Confidence 999999999999999999999999999999999999999999999999999999999999999999998854
Q ss_pred ----CCCccccchhhhH
Q psy6851 863 ----QEGKELSKGLAKK 875 (948)
Q Consensus 863 ----~~g~kmsKsl~n~ 875 (948)
++|+|||||+||+
T Consensus 258 g~v~~~G~KMSKS~GN~ 274 (463)
T PRK00260 258 GFVTVNGEKMSKSLGNF 274 (463)
T ss_pred cEEccCCCcccCcCCCC
Confidence 8999999999998
No 16
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=100.00 E-value=6.5e-67 Score=617.05 Aligned_cols=332 Identities=35% Similarity=0.538 Sum_probs=268.7
Q ss_pred HHHHHhcCCC-hHHHHHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeeeCCcEEEeeccCCCCC
Q psy6851 90 EAKEAQKKIP-PSEMFKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQP 166 (948)
Q Consensus 90 ~~~a~e~g~~-~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~f~~~g 166 (948)
+..|.+.|++ +.++++++++.|.+||. ||++|+++||||+|||+|| +||++||+|||||+++|||||||++|++.
T Consensus 114 i~~A~~~g~~~~~el~~~~~~~f~~d~~~Lni~~p~~~~r~tehi~~ii-~~i~~Li~~G~aY~~~gsvyFd~~~f~~~- 191 (651)
T PTZ00399 114 IKRAREEKLSIFLELARKWEKEFFEDMKALNVRPPDVITRVSEYVPEIV-DFIQKIIDNGFAYESNGSVYFDVEAFRKA- 191 (651)
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHHHHcCCCCCccccCcCccHHHHH-HHHHHHHHCCCEEEECCeEEEEchhcccc-
Confidence 4445666777 77777778888988888 9999999999999999999 79999999999999999999999999832
Q ss_pred CCC--------------------------ccccCCccccccccccCCCCcCCCCCCCcccCCCCCCCCCCcceeEe----
Q psy6851 167 NHY--------------------------YAKLVPEAYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIFF---- 216 (948)
Q Consensus 167 ~~~--------------------------YgKL~P~DFaLWK~ak~gEp~wespWg~~~~~m~~~~~GRPGWHIEc---- 216 (948)
+|. +.|.+|.||+|||.++||||.|+||||. |||||||||
T Consensus 192 ~~~Yg~L~p~~~~~~~~~~~g~~~l~~~~~~Kr~~~DFaLWk~~kpgep~W~SpwG~----------GrPGWHiECsam~ 261 (651)
T PTZ00399 192 GHVYPKLEPESVADEDRIAEGEGALGKVSGEKRSPNDFALWKASKPGEPSWDSPWGK----------GRPGWHIECSAMA 261 (651)
T ss_pred hhhHHhhChhhcCCHHHHhcccCCccccCcCCCCCccHHhhCCCCCCCCCCCCCCCC----------CCCCchHHHHHHH
Confidence 222 3455678999999999999999999995 999999999
Q ss_pred ---eccC-ccccccccccCCccccc-----------------cccccEEEcccchhhcchhHHHHHHH----------HH
Q psy6851 217 ---YGTR-ETGICRQDELFPYTEFK-----------------DKYGKVRVHLSQKQQSLKLVVIMKEF----------FL 265 (948)
Q Consensus 217 ---LG~~-dih~GG~DL~FPHHEne-----------------~h~G~l~i~geKMSKSLGN~vti~ef----------~l 265 (948)
||.+ |||+||+||+||||||| +|+|||+++|+||||||||||++.++ |.
T Consensus 262 ~~~lg~~~DIh~gG~DL~FPHHeNEiAQseA~~~~~~~v~y~~H~G~L~i~G~KMSKSLGNfItp~dlLekygaDaLR~~ 341 (651)
T PTZ00399 262 SNILGDPIDIHSGGIDLKFPHHDNELAQSEAYFDKHQWVNYFLHSGHLHIKGLKMSKSLKNFITIRQALSKYTARQIRLL 341 (651)
T ss_pred HHHcCCcceeeccCCCCCCCcchhHHHHHHHhhCCCCCCcEEEEEEEEEeccchhhhcCCCcccHHHHHHHcChHHHHHH
Confidence 8998 99999999999999997 57899999999999999999999875 23
Q ss_pred HHHHHHhh-cCCChhhhHHH-----------HhhH---------------HHhHHHhHHHHHHHHHHHHHHhhcCChHHH
Q psy6851 266 NVKDHIRN-LKFPATTVSSF-----------EKWT---------------QADLELSTRFIQTKNNVHAALCDNMDTRSA 318 (948)
Q Consensus 266 ~ls~hyR~-l~~s~~~l~~~-----------~r~~---------------~ad~eL~~~l~el~e~F~aAL~DDFNTP~A 318 (948)
+|+.|||+ ++|+++.+... .++. ..+..+...+..+...|.+||+||||||.|
T Consensus 342 lLs~~~~~dldFS~e~l~~a~~~~~~l~n~~~rl~s~l~~~~~~~~~~~~~~d~~Ll~~l~~~~~~v~~Am~Ddfnt~~A 421 (651)
T PTZ00399 342 FLLHKWDKPMNYSDESMDEAIEKDKVFFNFFANVKIKLRESELTSPQKWTQHDFELNELFEETKSAVHAALLDNFDTPEA 421 (651)
T ss_pred HHhcCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 36789999 99998865411 1111 112223445667889999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCC--CCHHHHHHHHHHHHHHHhHcccccccccCCCCCCCCCCCCcchhhhhhHHHHHHHHHHHH
Q psy6851 319 LDSIRDCISQVNIYLRGT--PNQLLLRDIGAYVTKILTVFGCIGDVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDN 396 (948)
Q Consensus 319 LaaLfeLVraiN~yLd~~--~~~~lL~~i~~~V~~mL~VLGL~~~~~~ig~~~~~~~~~~ss~eel~~~~Ld~Lv~~R~~ 396 (948)
++.|++|++.+|.|++.. .+..++..+..+|+.|+.||||......+||.... ...+.+.++|+.|+++|++
T Consensus 422 l~~L~eLv~~~N~yi~~~~~~~~~ll~~v~~~l~~~l~ILGl~~~~~m~~~~~~~------~~~~~~~~~i~~l~~~R~~ 495 (651)
T PTZ00399 422 LQALQKLISATNTYLNSGEQPSAPLLRSVAQYVTKILSIFGLVEGSDGLGSQGQN------STSENFKPLLEALLRFRDE 495 (651)
T ss_pred HHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhcccCCcchhhccccccc------cchhhhHHHHHHHHHHHHH
Confidence 999999999999999632 34456778899999999999996544444442211 1122335789999999999
Q ss_pred HHHHHhh--------hhhhhhhhhhcccccccCCCCCCeeeecCCc-ceEEe
Q psy6851 397 IRTEARL--------IKSTEILNQCDRLRDEVLPNVGVRLEDIEGK-SYITF 439 (948)
Q Consensus 397 iR~~AR~--------~~~LKLyNSldr~ReeflP~~G~~V~D~hAR-TyVsf 439 (948)
+|+.|+. ....++|..||++|++-++..|+.|+|...+ |.|.+
T Consensus 496 ~R~~a~~~~~~~~~~~~~~~~~~~~D~iRd~~L~~~Gi~l~D~~~g~~~~~~ 547 (651)
T PTZ00399 496 VRDAAKAEMKLISLDKKKKQLLQLCDKLRDEWLPNLGIRIEDKPDGPSVWKL 547 (651)
T ss_pred HHHHHHhccccccchhhhhhHHHHHHHHHHHHHHHCCCEEEEcCCCceEEEE
Confidence 9988776 3345899999999995338999999999655 45544
No 17
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2e-65 Score=595.88 Aligned_cols=318 Identities=23% Similarity=0.298 Sum_probs=252.3
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeee-CCcEEEeeccCCC
Q psy6851 88 AQEAKEAQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYES-NGSVYFNVNAFDS 164 (948)
Q Consensus 88 ~~~~~a~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes-~GsVYFDv~~f~~ 164 (948)
+-...|.+.|+++.++++++++.|.++|. ||.+|+++||||+||++|| +||++|+++||||+. +|||||||++|++
T Consensus 299 KII~~A~e~G~sp~ela~~y~~~F~~d~~~LnI~~p~~~praTeHI~~ii-~lI~~LidkG~AYe~~~gsVYFdV~~f~~ 377 (699)
T PRK14535 299 KIIARAAENGETIGELTARFIQAMHEDADALGVLRPDIEPKATENIPQMI-AMIETLIQNGKAYPAANGDVYYAVREFAA 377 (699)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCcEeeCccchHHHHH-HHHHHHHHCCCEEEeCCCCEEEecccccc
Confidence 34555667788888888888889998888 9999999999999999999 799999999999986 7899999999999
Q ss_pred CCC----------------CCccccCCccccccccccCCCCcCCCCCCCcccCCCCCCCCCCcceeEe-------eccC-
Q psy6851 165 QPN----------------HYYAKLVPEAYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIFF-------YGTR- 220 (948)
Q Consensus 165 ~g~----------------~~YgKL~P~DFaLWK~ak~gEp~wespWg~~~~~m~~~~~GRPGWHIEc-------LG~~- 220 (948)
||. ..-+|.+|.||+|||++++|||.|+||||. ||||||||| ||.+
T Consensus 378 YG~LS~~~~~~l~~g~rve~d~~Krnp~DFaLWK~sk~Gep~W~SPWG~----------GRPGWHIECSAMs~~~LG~~~ 447 (699)
T PRK14535 378 YGQLSGKSLDDLRAGERVEVDGFKRDPLDFVLWKAAKAGEPAWESPWGN----------GRPGWHIECSAMSENLFGDTF 447 (699)
T ss_pred cccccCCChHHhcCCCccccccccCCccccceeccCCCCCCCccCCCCC----------CCCchHHHHHHHHHHHcCCcc
Confidence 874 112488899999999999999999999995 999999999 9998
Q ss_pred ccccccccccCCccccc--------------------------------cccccEEEcccchhhcchhHHHHHHH-----
Q psy6851 221 ETGICRQDELFPYTEFK--------------------------------DKYGKVRVHLSQKQQSLKLVVIMKEF----- 263 (948)
Q Consensus 221 dih~GG~DL~FPHHEne--------------------------------~h~G~l~i~geKMSKSLGN~vti~ef----- 263 (948)
|||+||+||+||||||| +|+|+|+++|+|||||+||+++++++
T Consensus 448 DIHgGG~DLiFPHHENEiAQseA~~g~~~~~~~~~~~~~~~~~~~aryWmHnG~V~vdGeKMSKSLGN~it~~dlLe~yg 527 (699)
T PRK14535 448 DIHGGGADLQFPHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIREVLKQYD 527 (699)
T ss_pred eeECCccccCCCCCccHHHHHHHhhCCCcccccccccccccccccccEEEECCeEeeCCCccCCCCCCcCCHHHHHHhCC
Confidence 99999999999999986 23467788899999999999999875
Q ss_pred -----HHHHHHHHhh-cCCChhhhH----HHHhhHHHhHHH-------hHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q psy6851 264 -----FLNVKDHIRN-LKFPATTVS----SFEKWTQADLEL-------STRFIQTKNNVHAALCDNMDTRSALDSIRDCI 326 (948)
Q Consensus 264 -----~l~ls~hyR~-l~~s~~~l~----~~~r~~~ad~eL-------~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLV 326 (948)
|.++++|||+ ++|+++.+. .++|+...-..+ ...+..+.+.|.+||+||||||.||++||+++
T Consensus 528 pdalRl~lLsshYRspL~fS~e~Le~Ak~~l~Rl~~~l~~~~~~~~~~~~~l~~~~~~f~~AL~DDlntp~Ala~L~~lv 607 (699)
T PRK14535 528 PEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAAEFMLSENVNDYTRRFYAAMNDDFGTVEAVAVLFELA 607 (699)
T ss_pred HHHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHhhhhccchhhhhHHHHHHHHHHHHhhccChHHHHHHHHHHH
Confidence 3447899999 999998876 344554432221 12345678899999999999999999999999
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHhHcccccccccCCCCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHhhhhh
Q psy6851 327 SQVNIYLRGTPNQLLLRDIGAYVTKILTVFGCIGDVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKS 406 (948)
Q Consensus 327 raiN~yLd~~~~~~lL~~i~~~V~~mL~VLGL~~~~~~ig~~~~~~~~~~ss~eel~~~~Ld~Lv~~R~~iR~~AR~~~~ 406 (948)
+.+|..+. ..+...+..++.||||....... |...+. ....... ..|+.|++.|.++|+.
T Consensus 608 k~iN~~~~--------~~~~~~l~~~~~vLGl~~~~~~~-~~~~~~--~~~~~~~---~~i~~Li~~R~~AR~~------ 667 (699)
T PRK14535 608 GEVNKTND--------AQLAGCLKALGGIIGLLQRDPTE-FLQGGA--ASDGLSN---EEIEDLIARRKQARAD------ 667 (699)
T ss_pred HHHHHHHH--------HHHHHHHHHHHhhcCCCccchhh-hhhccc--ccccCCH---HHHHHHHHHHHHHHHh------
Confidence 99998631 12344567788999995322111 111000 0001111 1377888887777766
Q ss_pred hhhhhhhcccccccCCCCCCeeeecCCcceEE
Q psy6851 407 TEILNQCDRLRDEVLPNVGVRLEDIEGKSYIT 438 (948)
Q Consensus 407 LKLyNSldr~ReeflP~~G~~V~D~hARTyVs 438 (948)
|.|..+|++|+++ ...|+.|+|+..+|.|.
T Consensus 668 -Kdfa~AD~IRd~L-~~~GI~veDt~~Gt~W~ 697 (699)
T PRK14535 668 -KNWAESDRIRDLL-NEHKIILEDNAGGTTWR 697 (699)
T ss_pred -CCHHHHHHHHHHH-HHCCCEEEEcCCCceEe
Confidence 9999999999998 68999999997777764
No 18
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5e-63 Score=566.35 Aligned_cols=311 Identities=18% Similarity=0.212 Sum_probs=245.3
Q ss_pred HHhcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeeeCCcEEEeeccCCCCCC---
Q psy6851 93 EAQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPN--- 167 (948)
Q Consensus 93 a~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~f~~~g~--- 167 (948)
|++.|+++.++++++++.|.++|. ||.+|+++||||+||++|| +||++|+++||||+++|||||||.+|++||.
T Consensus 89 A~~~g~~~~e~a~~~~~~f~~d~~~Lni~~~~~~~rat~hi~~ii-~~i~~L~~kG~aY~~~~~vyFdv~~~~~YG~Ls~ 167 (490)
T PRK14536 89 AQEHGKSVLEIAAHYTAAFFRDTARLNIERPSIVCNATEHIQDMI-ALIKRLEARGHTYCAGGNVYFDIRTFPSYGSLAS 167 (490)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCceecCcccHHHHHH-HHHHHHHHCCCEEEECCeEEEeCCcccchhhhcC
Confidence 345577777777777778888887 9999999999999999999 7999999999999999999999999999864
Q ss_pred -------------CCccccCCcccccccccc--CC-CCcCCCCCCCcccCCCCCCCCCCcceeEe-------eccC-ccc
Q psy6851 168 -------------HYYAKLVPEAYGDTKTLQ--EG-EVRGYPPWPARIEGLADETPNRLKYHIFF-------YGTR-ETG 223 (948)
Q Consensus 168 -------------~~YgKL~P~DFaLWK~ak--~g-Ep~wespWg~~~~~m~~~~~GRPGWHIEc-------LG~~-dih 223 (948)
...+|.+|.||+|||..+ ++ +|.|+||||. ||||||||| ||.+ |||
T Consensus 168 ~~~~~l~~g~~v~~~~~K~np~DFaLWK~~~~~~~~~~~W~SpWG~----------GRPGWHIECsaMs~~~lg~~~DIH 237 (490)
T PRK14536 168 AAVEDLQAGARIEHDTNKRNPHDFVLWFTRSKFENHALTWDSPWGR----------GYPGWHIECSAMSMKYLGEQCDIH 237 (490)
T ss_pred CCHHHhhcCCcCCCCCCCCCchhchhcccccCCCCCCCcccCCCCC----------CCCChHHHHHHHHHHHcCCceeEE
Confidence 124678899999999875 44 5789999995 999999999 8998 999
Q ss_pred cccccccCCccccc----------------cccccEEEcccchhhcchhHHHHHHH-----------HHHHHHHHhh-cC
Q psy6851 224 ICRQDELFPYTEFK----------------DKYGKVRVHLSQKQQSLKLVVIMKEF-----------FLNVKDHIRN-LK 275 (948)
Q Consensus 224 ~GG~DL~FPHHEne----------------~h~G~l~i~geKMSKSLGN~vti~ef-----------~l~ls~hyR~-l~ 275 (948)
+||.||+||||||| +|+|+|+++|+|||||+||+++++++ |.++++|||+ ++
T Consensus 238 ~GG~DliFPHHeneiAqs~a~~g~~~~~~w~h~g~l~~~g~KMSKSlGN~itl~dll~~g~~~~alR~~lls~~yr~~l~ 317 (490)
T PRK14536 238 IGGVDHIRVHHTNEIAQCEAATGKPWVRYWLHHEFLLMNKGKMSKSAGQFLTLSSLQEKGFQPLDYRFFLLGGHYRSQLA 317 (490)
T ss_pred eccccCCCcchhhHHHHHHHhcCCCcceEEEEcCEEeecCccccccCCCcccHHHHHhcCCCHHHHHHHHHhCCCCCCCC
Confidence 99999999999997 68899999999999999999999875 3458999999 99
Q ss_pred CChhhhH----HHHhhHHHhHH---------------------------HhHHHHHHHHHHHHHHhhcCChHHHHHHHHH
Q psy6851 276 FPATTVS----SFEKWTQADLE---------------------------LSTRFIQTKNNVHAALCDNMDTRSALDSIRD 324 (948)
Q Consensus 276 ~s~~~l~----~~~r~~~ad~e---------------------------L~~~l~el~e~F~aAL~DDFNTP~ALaaLfe 324 (948)
|+++.+. .+.|+...-.. +...+..+.++|.+||+||||||.||++||+
T Consensus 318 Fs~e~l~~a~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~al~dDlntp~Al~~l~~ 397 (490)
T PRK14536 318 FSWEALKTAKAARRSLVRRVARVVDAARATTGSVRGTLAECAAERVAESRASESELLLTDFRAALEDDFSTPKALSELQK 397 (490)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccccchhhhhHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 9998765 33443332111 1122345778999999999999999999999
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHHhHccccc-ccccCCCCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHhh
Q psy6851 325 CISQVNIYLRGTPNQLLLRDIGAYVTKILTVFGCIG-DVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARL 403 (948)
Q Consensus 325 LVraiN~yLd~~~~~~lL~~i~~~V~~mL~VLGL~~-~~~~ig~~~~~~~~~~ss~eel~~~~Ld~Lv~~R~~iR~~AR~ 403 (948)
+++.+|.. ...+...++.++.||||.. ........... ..... .+ .|+.|++.|.++|+.
T Consensus 398 ~~~~~n~~---------~~~~~~~~~~~~~vLGl~~~~~~~~~~~~~~--~~~~~-~~----~i~~li~~R~~aR~~--- 458 (490)
T PRK14536 398 LVKDTSVP---------PSLCLSVLQAMDTVLGLGLIQEATASLSAQV--PAGPS-EE----EIGQLIEARAHARQT--- 458 (490)
T ss_pred HHHHhhhh---------HHHHHHHHHHHHhhcCcccccchhhhhhhcc--cccCC-HH----HHHHHHHHHHHHHHh---
Confidence 99999962 1235667888999999952 11000000000 00000 11 277888877777766
Q ss_pred hhhhhhhhhhcccccccCCCCCCeeeecCCcceEE
Q psy6851 404 IKSTEILNQCDRLRDEVLPNVGVRLEDIEGKSYIT 438 (948)
Q Consensus 404 ~~~LKLyNSldr~ReeflP~~G~~V~D~hARTyVs 438 (948)
|.|..+|++|+.+ ...|+.|+|+..+|.|.
T Consensus 459 ----kdf~~AD~iR~~L-~~~Gi~l~Dt~~Gt~w~ 488 (490)
T PRK14536 459 ----KDFPLADEIRDKL-KAEGIELEDTHLGTIWK 488 (490)
T ss_pred ----CCHHHHHHHHHHH-HHCCCEEEEcCCCceEE
Confidence 9999999999998 67899999997667663
No 19
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.1e-62 Score=559.29 Aligned_cols=313 Identities=16% Similarity=0.219 Sum_probs=246.1
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeeeCCcEEEeeccCCCCCC
Q psy6851 90 EAKEAQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPN 167 (948)
Q Consensus 90 ~~~a~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~f~~~g~ 167 (948)
+..|++.|+++.++++++++.|.++|. ||.+|+++||||+||++|| +||++|+++||||+++|+|||||.+|++||.
T Consensus 84 i~~A~~~g~~~~e~a~~~~~~f~~d~~~Lni~~~~~~p~atehi~~~i-~~i~~L~~kG~aY~~~~~vyFdv~~~~~YG~ 162 (481)
T PRK14534 84 VKAARERGLTVYEISRFFTEAFFDDCKKLNIVYPDKVLVASEYIPIMI-EVVKVLEENGFTYFVNGNVYFDTSCFKSYGQ 162 (481)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCceecCccchHHHHH-HHHHHHHHCCCEEEECCeEEEecccccchhh
Confidence 334556677777777788888888888 9999999999999999999 7999999999999999999999999999864
Q ss_pred ------------------CCccccCCccccccccc---cCCCCcCCCCCCCcccCCCCCCCCCCcceeEe-------ecc
Q psy6851 168 ------------------HYYAKLVPEAYGDTKTL---QEGEVRGYPPWPARIEGLADETPNRLKYHIFF-------YGT 219 (948)
Q Consensus 168 ------------------~~YgKL~P~DFaLWK~a---k~gEp~wespWg~~~~~m~~~~~GRPGWHIEc-------LG~ 219 (948)
.+-.|.+|.||+|||.. ++++|.|+||||. ||||||||| ||.
T Consensus 163 ls~~~l~~l~~~~~~~v~~~~~K~np~DFaLWK~~~~~~~~~~~w~spWG~----------GrPgWHiECsam~~~~lg~ 232 (481)
T PRK14534 163 MAGINLNDFKDMSVSRVEIDKSKRNKSDFVLWFTNSKFKDQEMKWDSPWGF----------GYPSWHLECAAMNLEYFKS 232 (481)
T ss_pred hcCCCHHHHhhhccCcCCcccCCCCcccchhcCcCCcCCCCCCeecCCCCC----------cCCcHHHHHHHHHHHHcCC
Confidence 01357789999999975 8999999999995 999999999 899
Q ss_pred C-ccccccccccCCccccc----------------cccccEEEcccchhhcchhHHHHHHH-----------HHHHHHHH
Q psy6851 220 R-ETGICRQDELFPYTEFK----------------DKYGKVRVHLSQKQQSLKLVVIMKEF-----------FLNVKDHI 271 (948)
Q Consensus 220 ~-dih~GG~DL~FPHHEne----------------~h~G~l~i~geKMSKSLGN~vti~ef-----------~l~ls~hy 271 (948)
+ |||+||.||+||||||| +|+|+|+++|+|||||+||+++++++ |.++++||
T Consensus 233 ~~DIH~GG~DliFPHHene~Aqs~a~~g~~~~~~W~H~g~l~~~g~KMSKSlGN~i~l~dll~~~~~~~alR~~lls~~y 312 (481)
T PRK14534 233 TLDIHLGGVDHIGVHHINEIAIAECYLNKKWCDMFVHGEFLIMEYEKMSKSNNNFITIKDLEDQGFSPLDFRYFCLTAHY 312 (481)
T ss_pred cceEEecccccCCCcchhHHHHHhhhcCCCcceEEEEecEEEecCceecccCCCcccHHHHHhcCCChhHHHHHHHhCCC
Confidence 8 99999999999999997 68899999999999999999999876 34589999
Q ss_pred hh-cCCChhhhH----HHHhhHHHhHHH------------h--------HHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q psy6851 272 RN-LKFPATTVS----SFEKWTQADLEL------------S--------TRFIQTKNNVHAALCDNMDTRSALDSIRDCI 326 (948)
Q Consensus 272 R~-l~~s~~~l~----~~~r~~~ad~eL------------~--------~~l~el~e~F~aAL~DDFNTP~ALaaLfeLV 326 (948)
|+ ++|+.+.|. +++|+...-..+ . .....+.+.|.+||+||||||.|+++||+++
T Consensus 313 r~~l~Fs~e~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~Al~DDlNtp~Al~~l~~~~ 392 (481)
T PRK14534 313 RTQLKFTFNNLKACKIARENMLNKLTYFYSSLDQFDLNLLNKDLENIEFSLEKEYYDSFLEKIAFDLNIPQGLALLWDII 392 (481)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccchhhhHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 99 999998875 344444321110 0 1123466899999999999999999999999
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHhHcccccccccCCCCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHhhhhh
Q psy6851 327 SQVNIYLRGTPNQLLLRDIGAYVTKILTVFGCIGDVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKS 406 (948)
Q Consensus 327 raiN~yLd~~~~~~lL~~i~~~V~~mL~VLGL~~~~~~ig~~~~~~~~~~ss~eel~~~~Ld~Lv~~R~~iR~~AR~~~~ 406 (948)
+.+|... . ... .+...+..++. ||+...... .. .. .....++ .|+.|++.|.++|+.
T Consensus 393 k~~n~~~---~--~~~-~~~~~~~~~~~-lg~~~~~~~-~~--~~---~~~~~~~----~i~~li~~R~~aR~~------ 449 (481)
T PRK14534 393 KDDNLSF---L--SKL-RLAFKFDEVLS-LGLREEILR-EI--EN---HRIVIDD----NMKSLIEERRLAKCE------ 449 (481)
T ss_pred HHHHHhh---h--hHH-HHHHHHHHHHh-CCCCcccch-hh--cc---ccccCHH----HHHHHHHHHHHHHHh------
Confidence 9999751 1 111 13344566666 887321100 00 00 0000111 377888887777766
Q ss_pred hhhhhhhcccccccCCCCCCeeeecCCcceEE
Q psy6851 407 TEILNQCDRLRDEVLPNVGVRLEDIEGKSYIT 438 (948)
Q Consensus 407 LKLyNSldr~ReeflP~~G~~V~D~hARTyVs 438 (948)
|.|..+|++|+++ ...|+.|+|+..+|.|.
T Consensus 450 -Kd~~~AD~iR~~L-~~~Gi~l~Dt~~Gt~w~ 479 (481)
T PRK14534 450 -KDFKRADEIREYF-ASKGFVLIDTEEGTKVK 479 (481)
T ss_pred -CChHHHHHHHHHH-HHCCCEEEEcCCCCEEE
Confidence 9999999999998 67899999997777764
No 20
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=100.00 E-value=7.6e-61 Score=548.15 Aligned_cols=317 Identities=25% Similarity=0.355 Sum_probs=255.7
Q ss_pred HHhcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeeeCCcEEEeeccCCCCCC---
Q psy6851 93 EAQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPN--- 167 (948)
Q Consensus 93 a~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~f~~~g~--- 167 (948)
|.+.|+++.+++..+++.|.++|. ||.+|+++||+|+|+++|+ +||++|+++|+||+.+|+|||||++|++||.
T Consensus 79 A~~~g~~~~e~~~~~~~~f~~~~~~Lgi~~~d~~~r~t~~~~~~~-~~i~~L~~kG~aY~~~~~Vyfdv~~~~~yg~ls~ 157 (463)
T PRK00260 79 ANEEGESIKELTERYIAAFHEDMDALNVLPPDIEPRATEHIPEII-ELIERLIDKGHAYEADGDVYFDVRKFPDYGKLSG 157 (463)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCCccccccccHHHHH-HHHHHHHHCCCEEEecCeEEEecccccccccCCC
Confidence 344566666666666667777776 9999999999999999999 7999999999999999999999999999874
Q ss_pred -------------CCccccCCccccccccccCCCCcCCCCCCCcccCCCCCCCCCCcceeEe-------eccC-cccccc
Q psy6851 168 -------------HYYAKLVPEAYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIFF-------YGTR-ETGICR 226 (948)
Q Consensus 168 -------------~~YgKL~P~DFaLWK~ak~gEp~wespWg~~~~~m~~~~~GRPGWHIEc-------LG~~-dih~GG 226 (948)
...+|.+|.||+|||++++|||.|+||||. ||||||||| ||.+ |||+||
T Consensus 158 ~~~~~~~~~~~~~~~~~K~~~~DF~Lwk~~~~~~~~w~s~~g~----------grpgWhiecsam~~~~lg~~~Dih~gG 227 (463)
T PRK00260 158 RNLDELQAGARVEVAEEKRDPLDFALWKAAKPGEPSWESPWGK----------GRPGWHIECSAMSTKYLGETFDIHGGG 227 (463)
T ss_pred CCHHHHhccCcCCcccCCCCccccceecCCCCCCCCCCCCCCC----------CCCChhHHHHHHHHHhcCCCcceecCc
Confidence 124588899999999999999999999995 999999999 8998 999999
Q ss_pred ccccCCccccc----------------cccccEEEcccchhhcchhHHHHHHH----------HHHHHHHHhh-cCCChh
Q psy6851 227 QDELFPYTEFK----------------DKYGKVRVHLSQKQQSLKLVVIMKEF----------FLNVKDHIRN-LKFPAT 279 (948)
Q Consensus 227 ~DL~FPHHEne----------------~h~G~l~i~geKMSKSLGN~vti~ef----------~l~ls~hyR~-l~~s~~ 279 (948)
.||+||||||| +|+|+|.++|+|||||+||++++.++ |.++++|||+ ++|+.+
T Consensus 228 ~DlifpHh~neiaqs~a~~g~p~~~~w~H~g~v~~~G~KMSKS~GN~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~ 307 (463)
T PRK00260 228 ADLIFPHHENEIAQSEAATGKPFANYWMHNGFVTVNGEKMSKSLGNFFTIRDLLKKYDPEVLRFFLLSAHYRSPLNFSEE 307 (463)
T ss_pred cccCCCchHhHHHHHHHhcCCCcceEEEEccEEccCCCcccCcCCCCCCHHHHHHHcCchHhHHHHHhCCCCCCCccCHH
Confidence 99999999986 57788999999999999999999875 3447899999 999998
Q ss_pred hhH----HHHhhHHHh---------HHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHH
Q psy6851 280 TVS----SFEKWTQAD---------LELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGTPNQLLLRDIG 346 (948)
Q Consensus 280 ~l~----~~~r~~~ad---------~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~~~~~~lL~~i~ 346 (948)
.+. .+.|+...- ..+...+..+.++|.+||+||||||.|+++|+++++.+|.+++.. +...+..+.
T Consensus 308 ~l~~a~~~~~rl~~~~~~~~~~~~d~~~~~~l~~~~~~~~~al~ddln~~~Al~~l~~lv~~~n~~~~~~-~~~~~~~~~ 386 (463)
T PRK00260 308 ALEQAKKALERLYNALAETALGEDDEALLAELEEFKERFIEAMDDDFNTPEALAVLFELAREINRALETK-DKEAAAALA 386 (463)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcc-cHHHHHHHH
Confidence 765 234443321 223345567889999999999999999999999999999999765 344567788
Q ss_pred HHHHHHHhHcccccccccCCCCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCCC
Q psy6851 347 AYVTKILTVFGCIGDVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLRDEVLPNVGV 426 (948)
Q Consensus 347 ~~V~~mL~VLGL~~~~~~ig~~~~~~~~~~ss~eel~~~~Ld~Lv~~R~~iR~~AR~~~~LKLyNSldr~ReeflP~~G~ 426 (948)
.++..|+.||||....... +.... ....+ ..++.|++.|.++|+. |.|..+|++|++| ...|+
T Consensus 387 ~~~~~~~~ilG~~~~~~~~-~~~~~----~~~~~----~~~~~li~~R~~aR~~-------Kdf~~AD~IRd~L-~~~Gi 449 (463)
T PRK00260 387 ALLRALADVLGLEQDEEAL-FEAAA----DELLD----AEIEALIEERQEARKA-------KDFALADAIRDEL-AALGI 449 (463)
T ss_pred HHHHHHHHhcCCCchhhhh-hhccc----ccccH----HHHHHHHHHHHHHHHc-------cCHHHHHHHHHHH-HHCCc
Confidence 8999999999994321110 00000 00111 2377788877766665 8999999999997 78999
Q ss_pred eeeecCCcceEE
Q psy6851 427 RLEDIEGKSYIT 438 (948)
Q Consensus 427 ~V~D~hARTyVs 438 (948)
.|+|+..+|.|.
T Consensus 450 ~v~D~~~G~~w~ 461 (463)
T PRK00260 450 VLEDTPDGTTWR 461 (463)
T ss_pred EEEEcCCCceEE
Confidence 999996666664
No 21
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2e-61 Score=539.63 Aligned_cols=252 Identities=22% Similarity=0.271 Sum_probs=210.5
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeeeCC----cEEEeeccCCC
Q psy6851 91 AKEAQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNG----SVYFNVNAFDS 164 (948)
Q Consensus 91 ~~a~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes~G----sVYFDv~~f~~ 164 (948)
..|++.|++++++++++++.|.++|. ||++|+++||||+||++|| +||++|+++||||+++| ||||||++|++
T Consensus 63 ~~A~~~G~~~~e~a~~~~~~f~~d~~~Lni~~~~~~~raTe~i~~~~-~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~~~ 141 (384)
T PRK12418 63 ERAARDGVDWRDLAEREIALFREDMEALRVLPPRDYVGAVESIPEVV-ELVEKLLASGAAYVVDDEEYPDVYFSVDATPQ 141 (384)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCCCccccCCCCHHHHH-HHHHHHHHCCCEEEeCCCCCccEEEecCchhh
Confidence 34455677777777777777877777 9999999999999999999 79999999999999877 99999999999
Q ss_pred CCC--------------------CCccccCCccccccccccCCCCcCCCCCCCcccCCCCCCCCCCcceeEe-------e
Q psy6851 165 QPN--------------------HYYAKLVPEAYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIFF-------Y 217 (948)
Q Consensus 165 ~g~--------------------~~YgKL~P~DFaLWK~ak~gEp~wespWg~~~~~m~~~~~GRPGWHIEc-------L 217 (948)
||. +.|.|.+|.||+|||++++|||.|+||||. ||||||||| |
T Consensus 142 YG~ls~~~~~~~~~~~~~~~~~~~~~~K~~p~DFaLWK~~~~~~~~w~spwG~----------GRPGWHiECsam~~~~l 211 (384)
T PRK12418 142 FGYESGYDRATMLELFAERGGDPDRPGKRDPLDALLWRAARPGEPSWPSPFGP----------GRPGWHIECSAIALNRL 211 (384)
T ss_pred cccccCCCHHHHHhhhcccccCcccccCCCcccceeeccCCCCCCcccCCCCC----------CCChhHHHHHHHHHHHc
Confidence 973 147899999999999999999999999995 999999999 8
Q ss_pred ccC-ccccccccccCCccccc-----------------cccccEEEcccchhhcchhHHHHHHHH-----------HHHH
Q psy6851 218 GTR-ETGICRQDELFPYTEFK-----------------DKYGKVRVHLSQKQQSLKLVVIMKEFF-----------LNVK 268 (948)
Q Consensus 218 G~~-dih~GG~DL~FPHHEne-----------------~h~G~l~i~geKMSKSLGN~vti~ef~-----------l~ls 268 (948)
|.+ |||+||+||+||||||| +|+|+|.++|+|||||+||++++.+++ ++++
T Consensus 212 g~~~DIH~GG~DL~FPHHeneiaq~~a~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~ell~~G~d~~~lR~~lls 291 (384)
T PRK12418 212 GSGFDIQGGGSDLIFPHHEFSAAHAEAATGERRFARHYVHAGMIGLDGEKMSKSRGNLVFVSRLRAAGVDPAAIRLALLA 291 (384)
T ss_pred CCCcccccCccccccchhHhHHHHHHHhcCCCCcceEEEECCEECCCCCcccCcCCCcCCHHHHHhccCChhheeEEEec
Confidence 998 99999999999999997 577888999999999999999998863 2368
Q ss_pred HHHhh-cCCChhhhH----HHHhhHHHhHHH-hHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcCCCCHHHH
Q psy6851 269 DHIRN-LKFPATTVS----SFEKWTQADLEL-STRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGTPNQLLL 342 (948)
Q Consensus 269 ~hyR~-l~~s~~~l~----~~~r~~~ad~eL-~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~~~~~~lL 342 (948)
+|||+ ++|+++.|. .++||...-..+ ...+.++.+.|.+||+||||||.|+++|+++++.+|.|+......
T Consensus 292 ~~yr~~l~fs~e~l~~a~~~l~r~~~~~~~~~~~~~~~~~~~f~~al~dDlnt~~a~~~l~~~~~~~n~~~~~~~~~--- 368 (384)
T PRK12418 292 GHYRADREWTDAVLAEAEARLARWRAAAALPAGPDAADVVARVRAALADDLDTPGALAAVDGWATDALEGGGDDAAA--- 368 (384)
T ss_pred cCCCCCcccCHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhccCCCccc---
Confidence 99999 999998876 345555432221 113345778999999999999999999999999999998544321
Q ss_pred HHHHHHHHHHHhHccc
Q psy6851 343 RDIGAYVTKILTVFGC 358 (948)
Q Consensus 343 ~~i~~~V~~mL~VLGL 358 (948)
.+.+.+.|..+||+
T Consensus 369 --~~~~~~~~~~~~~~ 382 (384)
T PRK12418 369 --PALVATAVDALLGV 382 (384)
T ss_pred --hHHHHHHHHHHhCc
Confidence 23345666777776
No 22
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=100.00 E-value=2.3e-60 Score=533.87 Aligned_cols=237 Identities=21% Similarity=0.271 Sum_probs=205.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeeeCC----cEEEeec
Q psy6851 87 AAQEAKEAQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNG----SVYFNVN 160 (948)
Q Consensus 87 ~~~~~~a~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes~G----sVYFDv~ 160 (948)
-+-+..|.+.|+++++++++++..|.++|. ||.+|+++||||+||++|| +||++|++|||||+.+| ||||||+
T Consensus 86 DKIi~~A~~~g~t~~ela~~y~~~f~~d~~~Lni~~~d~~~RaTe~i~~ii-~~i~~L~~kG~aY~~~~~~~~~VYFdv~ 164 (411)
T TIGR03447 86 DPLFERAERDGVDWRELGTSQIDLFREDMEALRVLPPRDYIGAVESIDEVI-EMVEKLLAAGAAYEVEGPEYPDVYFSIE 164 (411)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCCcccCCCCCHHHHH-HHHHHHHHCCCEEecCCCCcCcEEEecc
Confidence 334555667788888888888889998888 9999999999999999999 79999999999999876 9999999
Q ss_pred cCCCCCC--------------------CCccccCCccccccccccCCCCcCCCCCCCcccCCCCCCCCCCcceeEe----
Q psy6851 161 AFDSQPN--------------------HYYAKLVPEAYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIFF---- 216 (948)
Q Consensus 161 ~f~~~g~--------------------~~YgKL~P~DFaLWK~ak~gEp~wespWg~~~~~m~~~~~GRPGWHIEc---- 216 (948)
+|++||. +.|+|.+|.||+|||++++|||.|+||||. |||||||||
T Consensus 165 ~~~~YG~Ls~~~~~~~~~~~~~~~~~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~----------GRPGWHiECsam~ 234 (411)
T TIGR03447 165 ATEQFGYESGYDRATMLELFAERGGDPDRPGKRDPLDALLWRAAREGEPSWDSPFGP----------GRPGWHIECSAIA 234 (411)
T ss_pred chhccccccCCCHHHHHhhhcccccCcccccCCCCcccceeCCCCCCCCCccCCCCC----------CCChhHHHHHHHH
Confidence 9999973 148899999999999999999999999995 999999999
Q ss_pred ---eccC-ccccccccccCCccccc-----------------cccccEEEcccchhhcchhHHHHHHHH-----------
Q psy6851 217 ---YGTR-ETGICRQDELFPYTEFK-----------------DKYGKVRVHLSQKQQSLKLVVIMKEFF----------- 264 (948)
Q Consensus 217 ---LG~~-dih~GG~DL~FPHHEne-----------------~h~G~l~i~geKMSKSLGN~vti~ef~----------- 264 (948)
||.+ |||+||.||+||||||| +|+|+|.++|+||||||||++++++++
T Consensus 235 ~~~lg~~~Dih~GG~DLifpHheneiaq~~A~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~dl~~~g~dp~~lRl 314 (411)
T TIGR03447 235 TNRLGAGFDIQGGGSDLIFPHHEFSAAHAEAATGVRRMARHYVHAGMIGLDGEKMSKSLGNLVFVSKLRAAGVDPAAIRL 314 (411)
T ss_pred HHHcCCceecccCcccccccchHhHHHHHHHhcCCCCcceEEEECCEECcCCCCccCcCCCCCCHHHHHhcCCCcccEEE
Confidence 8998 99999999999999986 678899999999999999999999863
Q ss_pred HHHHHHHhh-cCCChhhhH----HHHhhHHHhHHH-hHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhc
Q psy6851 265 LNVKDHIRN-LKFPATTVS----SFEKWTQADLEL-STRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLR 334 (948)
Q Consensus 265 l~ls~hyR~-l~~s~~~l~----~~~r~~~ad~eL-~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd 334 (948)
.++++|||+ ++|+++.|+ .+++|...-..+ ...+.++..+|.+||+||||||.|+++||++++.+|..-.
T Consensus 315 ~lls~~Yr~pl~fs~e~l~~a~~~l~rl~~~~~~~~~~~~~~~~~~~~~al~dDln~p~a~~~l~~~~~~~n~~~~ 390 (411)
T TIGR03447 315 GLLAGHYRQDRDWTDAVLAEAEARLARWRAALAATDAPDATDLIARLRQHLANDLDTPAALAAVDNWAAAALSSGG 390 (411)
T ss_pred EEecCCCCCCCccCHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCC
Confidence 236999999 999998876 455665443222 1123456788999999999999999999999999998643
No 23
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=100.00 E-value=2.2e-59 Score=536.26 Aligned_cols=316 Identities=23% Similarity=0.289 Sum_probs=249.0
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeeeC-CcEEEeeccCCCCCC-
Q psy6851 92 KEAQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESN-GSVYFNVNAFDSQPN- 167 (948)
Q Consensus 92 ~a~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes~-GsVYFDv~~f~~~g~- 167 (948)
.|.+.|+++.++++.+++.|.++|. ||.+|+++||+|+||++|+ ++|++|+++|+||+++ |+|||||.+|++||.
T Consensus 76 ~A~~~g~~~~e~a~~~~~~f~~dl~~LgI~~d~~~~raT~hi~~i~-~~i~~L~ekG~aY~~~~g~vyfdv~~~~~yG~l 154 (465)
T TIGR00435 76 RARENGESVYEVSERFIEAYFEDMKALNVLPPDLEPRATEHIDEII-EFIEQLIEKGYAYVSDNGDVYFDVSKFKDYGKL 154 (465)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCCcCCccccccHHHHH-HHHHHHHHCCCEEEecCCcEEEeccccchhccC
Confidence 3455566666677777777877777 9999999999999999999 7999999999999998 999999999999874
Q ss_pred ---------------CCccccCCccccccccccCCCCcCCCCCCCcccCCCCCCCCCCcceeEe-------eccC-cccc
Q psy6851 168 ---------------HYYAKLVPEAYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIFF-------YGTR-ETGI 224 (948)
Q Consensus 168 ---------------~~YgKL~P~DFaLWK~ak~gEp~wespWg~~~~~m~~~~~GRPGWHIEc-------LG~~-dih~ 224 (948)
.+-.|.+|.||+|||++++|||.|+||||. ||||||||| ||.+ |||+
T Consensus 155 s~~~~~~~~~~~~~~~~~~K~~p~DF~Lwk~~~~~~~~w~spwG~----------grpgWhiecsam~~~~lg~~~Dih~ 224 (465)
T TIGR00435 155 SKQDLDQLEAGARVDVDEAKRNKLDFVLWKSSKEGEPKWDSPWGK----------GRPGWHIECSAMNDKYLGDQIDIHG 224 (465)
T ss_pred CCCCHHHHhcccccCcccccCCCCCceeeCCCCCCCCCCcCCCCC----------CCCCcHhHHHHHHHHhcCCCceeec
Confidence 012388899999999999999999999995 999999999 8998 9999
Q ss_pred ccccccCCccccc----------------cccccEEEcccchhhcchhHHHHHHH----------HHHHHHHHhh-cCCC
Q psy6851 225 CRQDELFPYTEFK----------------DKYGKVRVHLSQKQQSLKLVVIMKEF----------FLNVKDHIRN-LKFP 277 (948)
Q Consensus 225 GG~DL~FPHHEne----------------~h~G~l~i~geKMSKSLGN~vti~ef----------~l~ls~hyR~-l~~s 277 (948)
||.||+||||||+ +|+|+|.++|+|||||+||+++++++ |.+++.|||+ ++|+
T Consensus 225 gG~Dl~fpHhene~aqs~a~~g~~~~~~~~h~g~v~~~g~KMSKS~GN~i~~~dll~~~~~dalR~~ll~~~~~~~l~fs 304 (465)
T TIGR00435 225 GGVDLIFPHHENEIAQSEAAFGKQLAKYWMHNGFLMIDNEKMSKSLGNFFTVRDVLKNYDPEILRYFLLSVHYRSPLDFS 304 (465)
T ss_pred cccccccchHHHHHHHHHHhcCCCCCcEEEEeeEEEecCccccccCCCcCCHHHHHHHCCHHHHHHHHHhCCCCCCCccC
Confidence 9999999999986 68899999999999999999999875 3447899999 9999
Q ss_pred hhhhH----HHHhhHHHhHHH--------------hHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH-hhhcCCCC
Q psy6851 278 ATTVS----SFEKWTQADLEL--------------STRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVN-IYLRGTPN 338 (948)
Q Consensus 278 ~~~l~----~~~r~~~ad~eL--------------~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN-~yLd~~~~ 338 (948)
.+.+. .+.++...-..+ ......+.+.|.+||+||||||.|+++||++++.+| ..++
T Consensus 305 ~~~l~~a~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~al~dDlnt~~a~~~l~~~~~~~n~~~~~---- 380 (465)
T TIGR00435 305 EELLEAAKNALERLYKALRVLDTTLAYSGNQSLNKFPDEKEFEARFVEAMDDDLNTANALAVLFELAKSINLTFVS---- 380 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhhhhcc----
Confidence 98765 234443321111 112345678999999999999999999999999999 4442
Q ss_pred HHHHHHHHHHHHHHHhHcccccccccCCCCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccc
Q psy6851 339 QLLLRDIGAYVTKILTVFGCIGDVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLRD 418 (948)
Q Consensus 339 ~~lL~~i~~~V~~mL~VLGL~~~~~~ig~~~~~~~~~~ss~eel~~~~Ld~Lv~~R~~iR~~AR~~~~LKLyNSldr~Re 418 (948)
...+..+...++.|+.|||+..... ..|...+ ...... ..|+.|++.|.++|+. |.|..+|++|+
T Consensus 381 ~~~~~~~~~~~~~l~~~lg~~~~~~-~~~~~~~--~~~~~~-----~~i~~l~~~R~~ar~~-------k~~~~aD~iR~ 445 (465)
T TIGR00435 381 KADAALLIEHLIFLESRLGLLLGLP-SKPVQAG--SNDDEL-----GEIEALIEERSIARKE-------KDFAKADEIRD 445 (465)
T ss_pred hHHHHHHHHHHHHHHHhcccCcccc-chhcccc--cccccH-----HHHHHHHHHHHHHHHh-------CCHHHHHHHHH
Confidence 1224456778889999999952111 0011100 000000 1367788877766666 89999999999
Q ss_pred ccCCCCCCeeeecCCcceEE
Q psy6851 419 EVLPNVGVRLEDIEGKSYIT 438 (948)
Q Consensus 419 eflP~~G~~V~D~hARTyVs 438 (948)
+| ...|+.|+|+..+|.|.
T Consensus 446 ~L-~~~Gi~~~D~~~gt~w~ 464 (465)
T TIGR00435 446 EL-LKKGIVLEDTPQGTTWR 464 (465)
T ss_pred HH-HHCCCEEEECCCCceee
Confidence 88 68899999997777663
No 24
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=100.00 E-value=8.3e-59 Score=500.79 Aligned_cols=180 Identities=29% Similarity=0.478 Sum_probs=139.6
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeeeC-CcEEEeeccCCCCCC-
Q psy6851 92 KEAQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESN-GSVYFNVNAFDSQPN- 167 (948)
Q Consensus 92 ~a~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes~-GsVYFDv~~f~~~g~- 167 (948)
+|.+.|+++.+|+++++++|.+||+ ||++|+++||||||||+|| +||++||+|||||+++ |||||||++|++||.
T Consensus 63 ~A~~~g~~~~ela~~y~~~f~~dm~~Lnv~~p~~~prate~i~~ii-~~i~~Li~~G~AY~~~~g~VYFdv~~~~~YG~L 141 (300)
T PF01406_consen 63 RAREEGVSPQELARRYEEEFFEDMKALNVLPPDHYPRATEHIPEII-ELIEKLIDKGHAYESEDGSVYFDVSKFPDYGKL 141 (300)
T ss_dssp HHHHTTS-HHHHHHHHHHHHHHHHHHTT----SEEEEGGGGHHHHH-HHHHHHHHTTSEEEETTSEEEE-CCGSTTTTTT
T ss_pred HHHhccCCHHHHHHHHHHHHHHHHHHcCCCCCccccchhccHHHHH-HHHHHHHHCCCeEEcCCCcEEEeeccccccccc
Confidence 3445566666666666668888888 9999999999999999999 7999999999999997 999999999999875
Q ss_pred ---------------CCccccCCccccccccccCCCCcCCCCCCCcccCCCCCCCCCCcceeEe-------eccC-cccc
Q psy6851 168 ---------------HYYAKLVPEAYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIFF-------YGTR-ETGI 224 (948)
Q Consensus 168 ---------------~~YgKL~P~DFaLWK~ak~gEp~wespWg~~~~~m~~~~~GRPGWHIEc-------LG~~-dih~ 224 (948)
..|.|.+|.||+|||++++|||.|+||||. ||||||||| ||.+ |||+
T Consensus 142 s~~~~~~l~~~~~~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~----------GRPGWHiECsam~~~~lG~~~DIH~ 211 (300)
T PF01406_consen 142 SNQDLEDLEAGARVEVDYEKRNPRDFALWKAAKPGEPSWDSPWGK----------GRPGWHIECSAMSMKYLGDTFDIHG 211 (300)
T ss_dssp TT-SHHHHHHCHHHTT-TTSSSTT-EEEEEE--TTS--B--TTSS----------EEE-HHHHHHHHHHHHHTTSEEEEE
T ss_pred cccchhhHHhhhhcccccccCCCcceeeeecccccCCcccCCCcc----------CcCceeeehHHHHHHHcCCCceEEc
Confidence 248899999999999999999999999995 999999999 8998 9999
Q ss_pred ccccccCCccccc----------------cccccEEEcccchhhcchhHHHHHHH----------HHHHHHHHhh-cCCC
Q psy6851 225 CRQDELFPYTEFK----------------DKYGKVRVHLSQKQQSLKLVVIMKEF----------FLNVKDHIRN-LKFP 277 (948)
Q Consensus 225 GG~DL~FPHHEne----------------~h~G~l~i~geKMSKSLGN~vti~ef----------~l~ls~hyR~-l~~s 277 (948)
||+||+||||||| +|+|||+++|+|||||||||++|+++ |+++++|||+ ++||
T Consensus 212 GG~DL~FPHHENEiAqs~a~~g~~~a~~W~H~g~l~~~g~KMSKSlgN~~~i~dll~~~~~~~lR~~~l~~hYr~~l~~s 291 (300)
T PF01406_consen 212 GGIDLIFPHHENEIAQSEAATGKPFANYWMHNGHLNVDGEKMSKSLGNFITIRDLLKKYSPDALRLFLLSTHYRKPLNFS 291 (300)
T ss_dssp EEGGGTTTHHHHHHHHHHHHHSS-SEEEEEEE--EEETTCE--TTTT---BHHHHHTTS-HHHHHHHHHTS-TTS-EEE-
T ss_pred cccccCCCCccchHHHHHHhhCchHHHHHHHHHHHhhcCccccccCCCEEEHHHHhhcCCHHHHHHHHhcCCCCCccccC
Confidence 9999999999997 78999999999999999999999986 3569999999 9999
Q ss_pred hhhhH
Q psy6851 278 ATTVS 282 (948)
Q Consensus 278 ~~~l~ 282 (948)
++.|+
T Consensus 292 ~~~l~ 296 (300)
T PF01406_consen 292 EENLE 296 (300)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88765
No 25
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=7.8e-38 Score=326.27 Aligned_cols=58 Identities=53% Similarity=0.932 Sum_probs=56.2
Q ss_pred hhHHHHHHHHhhcCCCceeecCCCCCCCCCChhHHHHHhccCCCC------------CCCccccchhhhH
Q psy6851 818 WHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLPTHD------------QEGKELSKGLAKK 875 (948)
Q Consensus 818 WHieCs~m~~~~lg~~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~------------~~g~kmsKsl~n~ 875 (948)
|||||||||.++||.++|||+||+||+||||+||+||++|+++.+ ++|+|||||+||+
T Consensus 113 Wh~ec~am~~~~lg~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~~~v~~~g~KMSKs~Gn~ 182 (213)
T cd00672 113 WHIECSAMAMKYLGETFDIHGGGVDLIFPHHENEIAQSEAATGKPFARYWLHTGHLTIDGEKMSKSLGNF 182 (213)
T ss_pred hhHHHHHHHHHHcCCCccEEeecCCCCcChHHHHHHHHHHHhCCCCCcEEEEEEEEeccCcchhhcCCCc
Confidence 999999999999999999999999999999999999999998865 7899999999999
No 26
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=99.95 E-value=1.3e-29 Score=276.74 Aligned_cols=165 Identities=15% Similarity=0.084 Sum_probs=119.9
Q ss_pred ccHHHHHHHHHHHHhhcCCCCC---CeeecccccHHHHHHHHhCcccCCC-cccCCcccccCCCCCccccccCCCCCccc
Q psy6851 626 TLPKHWEAEFHKDMADLNVLPP---TVLTRVSEYIPEIVASAQTPKPAAA-KKAESSSDDDSSSEDEKPAVKAPAKPVAH 701 (948)
Q Consensus 626 ~~~~~~~~~f~~dm~~L~v~~p---~~~~rvse~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvssede~pa~k~~~k~~~~ 701 (948)
+++++|.++|.+||++|||..+ ...|...+|++.|..++++|.++|+ |+..+.||++..-
T Consensus 79 ~~~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~~~~~---------------- 142 (312)
T cd00668 79 EFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPVRITEQW---------------- 142 (312)
T ss_pred HHHHHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeecceeEeeeeE----------------
Confidence 5789999999999999999887 3445555899999999999999999 9988888665543
Q ss_pred ccchhhhhhcCCCCCCCCCCCCCCcCcCCCCcccccccChhhhhhcCCCCCCCCCCCCCcccccCCCCchhhccCCCCCC
Q psy6851 702 AAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLS 781 (948)
Q Consensus 702 ~~~~~~akk~eSSsd~~ssse~e~~a~~~~~k~~~~a~~~~~~k~~~ssSd~~Sssede~p~~k~~~~~~~~~~~~~~~~ 781 (948)
+- ++.++...... .+..+. .
T Consensus 143 ---------------f~-----------~~~~l~~~~~~-------------------------------~~~~~~--~- 162 (312)
T cd00668 143 ---------------FF-----------DMPKFKEKLLK-------------------------------ALRRGK--I- 162 (312)
T ss_pred ---------------EE-----------EcHHHHHHHHH-------------------------------HHhcCC--c-
Confidence 11 11121110000 000000 0
Q ss_pred ccccccC-------CCCCCcceeeccCCCCCcccCCCCCCCCchhHHH----HH---HHHhhcCC--------CceeecC
Q psy6851 782 SQEASEK-------RSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIEC----SV---MASAVLGP--------QLDIHTG 839 (948)
Q Consensus 782 ~~~~~~K-------~~~~DfaLwk~~k~~ep~w~spwg~GrPgWHieC----s~---m~~~~lg~--------~~dih~G 839 (948)
.....| +++.||+|++ ++|||.|+|||||+| ++ |+..+++. ++|||+|
T Consensus 163 -~p~~~~~~~~~~l~~~~d~~isR---------~~~WG~~~P~~~i~~Wfds~~~~~~~~~~~~~~~~~~~~~~~di~~~ 232 (312)
T cd00668 163 -VPEHVKNRMEAWLESLLDWAISR---------QRYWGTPLPEDVFDVWFDSGIGPLGSLGYPEEKEWFKDSYPADWHLI 232 (312)
T ss_pred -CChHHHHHHHHHHhCCCCeEEec---------cCCCCCcCCcccccchhhccHHHHHHcCCCccchhhhhcCCceEEEE
Confidence 000112 3566999965 568999999999999 64 55555554 6899999
Q ss_pred CCCCCCCCChhHHHHHhccCCC-C-----------CCC-ccccchhhhHh
Q psy6851 840 GVDLKFPHHDNELAQAEGLPTH-D-----------QEG-KELSKGLAKKL 876 (948)
Q Consensus 840 G~Dl~FPHH~ne~aq~e~~~~~-~-----------~~g-~kmsKsl~n~l 876 (948)
|.|++||||.+++||++++.+. . .+| +|||||+||++
T Consensus 233 G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~KmSKS~gn~v 282 (312)
T cd00668 233 GKDILRGWANFWITMLVALFGEIPPKNLLVHGFVLDEGGQKMSKSKGNVI 282 (312)
T ss_pred ecchhhhHHHHHHHHHHHhcCCCCcceeEECcEEEcCCCccccccCCCcC
Confidence 9999999999999999998765 3 455 99999999994
No 27
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=99.93 E-value=3.2e-27 Score=272.68 Aligned_cols=205 Identities=14% Similarity=0.088 Sum_probs=124.6
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCeeecccc--cHHHHHHHHhCcccCCC-cccCCcccccCCCCCccc-cccCCCCCcccc
Q psy6851 627 LPKHWEAEFHKDMADLNVLPPTVLTRVSE--YIPEIVASAQTPKPAAA-KKAESSSDDDSSSEDEKP-AVKAPAKPVAHA 702 (948)
Q Consensus 627 ~~~~~~~~f~~dm~~L~v~~p~~~~rvse--~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvssede~p-a~k~~~k~~~~~ 702 (948)
++++|..+|.+||++|||. ++.++|+++ |+..|+.++++|.++|+ |+.+++|||+++++.=-+ ..-..+.+.
T Consensus 68 ~~~~~~~~~~~~l~~l~I~-~D~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~~~~p~--- 143 (511)
T PRK11893 68 LADRNSAAFKRLWEALNIS-YDDFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELIEDGYR--- 143 (511)
T ss_pred HHHHHHHHHHHHHHHhCCC-cCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhcCCCCC---
Confidence 5789999999999999998 688888888 99999999999999999 999999999998831000 000000000
Q ss_pred cchhhhhhcCCCCCCCCCCCCC-CcCcCCCCcccccccChhhhhhcCCCCCCCCCCCCCcccccCCCCchhhccCCCCCC
Q psy6851 703 AEPAAAKKAESSSDDDSSSEDE-KPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLS 781 (948)
Q Consensus 703 ~~~~~akk~eSSsd~~ssse~e-~~a~~~~~k~~~~a~~~~~~k~~~ssSd~~Sssede~p~~k~~~~~~~~~~~~~~~~ 781 (948)
|.-.. ++-+ .+..+-+.+++.-+.... ..- .+ . +.. ..|..... .+
T Consensus 144 -----------~~~~~--~~~~~~~~~~~f~~l~~~~~~l~--~~~---~~---~-----~~~---~~p~~~~~---~~- 190 (511)
T PRK11893 144 -----------CPPTG--APVEWVEEESYFFRLSKYQDKLL--ELY---EA---N-----PDF---IQPASRRN---EV- 190 (511)
T ss_pred -----------CCCCC--CcceEEecCeEEEEcHHHHHHHH--HHH---Hh---C-----CCc---cCCHHHHH---HH-
Confidence 00000 0000 000001222211000000 000 00 0 000 00000000 00
Q ss_pred ccccccCCCCCCcceee-ccC-----CCCC------cccCCCC----CCCCchhHHHHHH---HHhhcCCCceeecCCCC
Q psy6851 782 SQEASEKRSPNDFALWK-KSK-----AGEP------WWSSPWG----EGRPGWHIECSVM---ASAVLGPQLDIHTGGVD 842 (948)
Q Consensus 782 ~~~~~~K~~~~DfaLwk-~~k-----~~ep------~w~spwg----~GrPgWHieCs~m---~~~~lg~~~dih~GG~D 842 (948)
..--+++..||++|+ ... |+++ |+++.+| .|+|| ||++| ...++ +.|+|+||.|
T Consensus 191 --~~~l~~~~~D~~isR~~~~WGipiP~~~~~~~~vWfda~~~y~s~~~~p~---~~~~~~~~~~~~~--~~D~~~~G~D 263 (511)
T PRK11893 191 --ISFVKSGLKDLSISRTNFDWGIPVPGDPKHVIYVWFDALTNYLTALGYPD---DEELLAELFNKYW--PADVHLIGKD 263 (511)
T ss_pred --HHHHHCCCCCcccCCCCCCCCccCCCCCCceEEEEecCcHHHHhHhcccc---ccccchhHHHhcC--CCcceEeccc
Confidence 011256789999999 443 5553 4455544 36787 99998 34555 5899999999
Q ss_pred CCCCCChhHHHHHhccCCCC-----------CCCccccchhhhH
Q psy6851 843 LKFPHHDNELAQAEGLPTHD-----------QEGKELSKGLAKK 875 (948)
Q Consensus 843 l~FPHH~ne~aq~e~~~~~~-----------~~g~kmsKsl~n~ 875 (948)
++||||.+++||+.++.... .+|+|||||+||+
T Consensus 264 ~~~~h~~~~~a~~~a~~~~~p~~~~~~g~v~~~G~KMSKS~GN~ 307 (511)
T PRK11893 264 ILRFHAVYWPAFLMAAGLPLPKRVFAHGFLTLDGEKMSKSLGNV 307 (511)
T ss_pred ccccchhHHHHHHHhCCCCCCCEEEeeccEEECCeeecccCCcE
Confidence 99999999999999973221 7999999999999
No 28
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=99.86 E-value=3e-21 Score=223.32 Aligned_cols=230 Identities=17% Similarity=0.174 Sum_probs=161.7
Q ss_pred HHhcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccc--cHHHHHHHHHHHHHHcCCeeeeCCcEEEeecc--C----
Q psy6851 93 EAQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSE--YIPEIVASYIEKIIANGLAYESNGSVYFNVNA--F---- 162 (948)
Q Consensus 93 a~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe--~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~--f---- 162 (948)
|.+.|+++.++++.+...|.+++. ||. ++.++|.|+ |+..|+ +++++|+++|++|+..++|||++.. |
T Consensus 58 a~~~g~~~~~~~~~~~~~~~~~l~~l~I~-~D~~~~t~~~~~~~~v~-~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~ 135 (511)
T PRK11893 58 AEEAGISPQELADRNSAAFKRLWEALNIS-YDDFIRTTDPRHKEAVQ-EIFQRLLANGDIYLGKYEGWYCVRCEEFYTES 135 (511)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHhCCC-cCCceeCCCHHHHHHHH-HHHHHHHHCCCEEEeeeeeeccccccccCCHH
Confidence 344566666677777777877777 986 777888887 999999 7999999999999999999999986 4
Q ss_pred --CCC-------CC--------CCccccCC---------------------------------ccccccccccCCCCcCC
Q psy6851 163 --DSQ-------PN--------HYYAKLVP---------------------------------EAYGDTKTLQEGEVRGY 192 (948)
Q Consensus 163 --~~~-------g~--------~~YgKL~P---------------------------------~DFaLWK~ak~gEp~we 192 (948)
.+. |. +-|.+|+. .||++|+. .
T Consensus 136 ~l~~~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~D~~isR~--------~ 207 (511)
T PRK11893 136 ELIEDGYRCPPTGAPVEWVEEESYFFRLSKYQDKLLELYEANPDFIQPASRRNEVISFVKSGLKDLSISRT--------N 207 (511)
T ss_pred HhcCCCCCCCCCCCcceEEecCeEEEEcHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHCCCCCcccCCC--------C
Confidence 110 00 22444432 23333330 1
Q ss_pred CCCCCcccCCC--------C------CCCCCCcceeEeec------c---CccccccccccCCccccc------------
Q psy6851 193 PPWPARIEGLA--------D------ETPNRLKYHIFFYG------T---RETGICRQDELFPYTEFK------------ 237 (948)
Q Consensus 193 spWg~~~~~m~--------~------~~~GRPGWHIEcLG------~---~dih~GG~DL~FPHHEne------------ 237 (948)
..||.|+++.. + ...|+|| ||-+ . .|+|++|.|++||||.++
T Consensus 208 ~~WGipiP~~~~~~~~vWfda~~~y~s~~~~p~---~~~~~~~~~~~~~~~D~~~~G~D~~~~h~~~~~a~~~a~~~~~p 284 (511)
T PRK11893 208 FDWGIPVPGDPKHVIYVWFDALTNYLTALGYPD---DEELLAELFNKYWPADVHLIGKDILRFHAVYWPAFLMAAGLPLP 284 (511)
T ss_pred CCCCccCCCCCCceEEEEecCcHHHHhHhcccc---ccccchhHHHhcCCCcceEecccccccchhHHHHHHHhCCCCCC
Confidence 24666665432 0 1236665 5532 1 279999999999999975
Q ss_pred ---cccccEEEcccchhhcchhHHHHHHH-----------HHHHHHHHhh-cCCChhhhHH-------------HHhhHH
Q psy6851 238 ---DKYGKVRVHLSQKQQSLKLVVIMKEF-----------FLNVKDHIRN-LKFPATTVSS-------------FEKWTQ 289 (948)
Q Consensus 238 ---~h~G~l~i~geKMSKSLGN~vti~ef-----------~l~ls~hyR~-l~~s~~~l~~-------------~~r~~~ 289 (948)
+++|+|.++|+|||||+||+|++.++ |++..++|++ ++|+.+.+.. +.|+..
T Consensus 285 ~~~~~~g~v~~~G~KMSKS~GN~i~~~dll~~~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~~l~~~l~n~~~r~~~ 364 (511)
T PRK11893 285 KRVFAHGFLTLDGEKMSKSLGNVIDPFDLVDEYGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGNLAQRTLS 364 (511)
T ss_pred CEEEeeccEEECCeeecccCCcEEcHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999998875 3322347777 8998876521 222211
Q ss_pred H------------------hHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcCC
Q psy6851 290 A------------------DLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGT 336 (948)
Q Consensus 290 a------------------d~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~~ 336 (948)
. +..+...+..+...+.++| |+|+++.|+..|+++++.+|.|++..
T Consensus 365 ~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~-~~~~~~~a~~~l~~l~~~~n~y~~~~ 428 (511)
T PRK11893 365 MIAKNFDGKVPEPGALTEADEALLEAAAALLERVRAAM-DNLAFDKALEAILALVRAANKYIDEQ 428 (511)
T ss_pred HHHHhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHhhC
Confidence 0 1123345567889999999 99999999999999999999999753
No 29
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=99.81 E-value=4.6e-21 Score=210.68 Aligned_cols=198 Identities=17% Similarity=0.012 Sum_probs=124.7
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCeeecccc--cHHHHHHHHhCcccCCC-cccCCcccccCCCCCccccccCCCCCccccc
Q psy6851 627 LPKHWEAEFHKDMADLNVLPPTVLTRVSE--YIPEIVASAQTPKPAAA-KKAESSSDDDSSSEDEKPAVKAPAKPVAHAA 703 (948)
Q Consensus 627 ~~~~~~~~f~~dm~~L~v~~p~~~~rvse--~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvssede~pa~k~~~k~~~~~~ 703 (948)
+++.+.+.|.++|++|||. ++.++|+++ |++.|.+++++|.++|+ |+.+..+++++.++.-.+-
T Consensus 67 ~~~~~~~~~~~~l~~LgI~-~D~~~~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~e------------ 133 (319)
T cd00814 67 LCDKYHEIFKDLFKWLNIS-FDYFIRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLPE------------ 133 (319)
T ss_pred HHHHHHHHHHHHHHHcCCc-CCCCeeCCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEeeE------------
Confidence 5678999999999999996 689999887 99999999999999999 9988888999888421110
Q ss_pred chhhhhhcCCCCCCCCCCCCCCcCcCCCCcccccccChhhhhhcCCCCCCCCCCCCCcccc-cCCCCchhhccCCCCCCc
Q psy6851 704 EPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAV-KAPAKPVAQAAKPGDLSS 782 (948)
Q Consensus 704 ~~~~akk~eSSsd~~ssse~e~~a~~~~~k~~~~a~~~~~~k~~~ssSd~~Sssede~p~~-k~~~~~~~~~~~~~~~~~ 782 (948)
.- +++ +-+-++..-+... .+.- +. ..+.--|+. +.... .-+..+-.+..
T Consensus 134 -------------~~--~~~-----~~ff~l~~~~~~l--~~~~----~~--~~~~~~p~~~~~~~~-~~l~~~l~d~~- 183 (319)
T cd00814 134 -------------WR--EEE-----HYFFRLSKFQDRL--LEWL----EK--NPDFIWPENARNEVL-SWLKEGLKDLS- 183 (319)
T ss_pred -------------EE--eee-----eEEEEhHHHHHHH--HHHH----Hh--CCccCCCHHHHHHHH-HHHhCCCcccC-
Confidence 00 000 0111111000000 0000 00 000000000 00000 00111111221
Q ss_pred cccccCCCCCCcceeeccCCCCCc-----c-cCCCC----CCCCchhHHHHHHHHhhcCCCceeecCCCCCCCCCChhHH
Q psy6851 783 QEASEKRSPNDFALWKKSKAGEPW-----W-SSPWG----EGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNEL 852 (948)
Q Consensus 783 ~~~~~K~~~~DfaLwk~~k~~ep~-----w-~spwg----~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FPHH~ne~ 852 (948)
-.+|++.|.-.-|+.+. | +++|| -|+++|+.+|+.+- ..+...+||..|.|++|+|+....
T Consensus 184 -------isR~~~~WGipvp~~~~~~~yvWfda~~~y~~~~~~~~~~~~~~~~~--~~~~~~~v~~~G~D~~~fh~~~~p 254 (319)
T cd00814 184 -------ITRDLFDWGIPVPLDPGKVIYVWFDALIGYISATGYYNEEWGNSWWW--KDGWPELVHFIGKDIIRFHAIYWP 254 (319)
T ss_pred -------CCccCcccCeeCCCCCCcEEEEehhhHHHHHHHcccccccccchhhh--hcCCCceEEEEeechhhhhHHHHH
Confidence 23466678766666652 5 89998 89999999998333 346688999999999999999999
Q ss_pred HHHhccCCCC-----------CCCccccchhhhHh
Q psy6851 853 AQAEGLPTHD-----------QEGKELSKGLAKKL 876 (948)
Q Consensus 853 aq~e~~~~~~-----------~~g~kmsKsl~n~l 876 (948)
|+..+..-.. ++|+|||||+||++
T Consensus 255 a~l~~~~~~~~~~~~~~~~~~~~g~kmSkS~gn~i 289 (319)
T cd00814 255 AMLLGAGLPLPTRIVAHGYLTVEGKKMSKSRGNVV 289 (319)
T ss_pred HHHHhCCCCCCcEeeeeeeEEECCeeecccCCccc
Confidence 9977653221 79999999999993
No 30
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.78 E-value=8.9e-20 Score=190.98 Aligned_cols=112 Identities=21% Similarity=0.305 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeeeCCcEEEee
Q psy6851 82 KAELAAAQEAKEAQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNV 159 (948)
Q Consensus 82 ~~~~a~~~~~~a~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes~GsVYFDv 159 (948)
|.+.-.+-+.+|.+.|++++++++++++.|.++++ ||.+|+.++|+
T Consensus 65 ~dd~g~ki~~~A~~~g~~p~e~~~~~~~~f~~~~~~l~i~~~d~~~rt-------------------------------- 112 (213)
T cd00672 65 ITDIDDKIIKRAREEGLSWKEVADYYTKEFFEDMKALNVLPPDVVPRV-------------------------------- 112 (213)
T ss_pred cCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCCcceee--------------------------------
Confidence 44444444555666788888888888888988887 99999999998
Q ss_pred ccCCCCCCCCccccCCccccccccccCCCCcCCCCCCCcccCCCCCCCCCCcceeEe-------eccC-ccccccccccC
Q psy6851 160 NAFDSQPNHYYAKLVPEAYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIFF-------YGTR-ETGICRQDELF 231 (948)
Q Consensus 160 ~~f~~~g~~~YgKL~P~DFaLWK~ak~gEp~wespWg~~~~~m~~~~~GRPGWHIEc-------LG~~-dih~GG~DL~F 231 (948)
||||| ||.+ |||+||.||+|
T Consensus 113 ----------------------------------------------------Wh~ec~am~~~~lg~~~dih~~G~Dl~f 140 (213)
T cd00672 113 ----------------------------------------------------WHIECSAMAMKYLGETFDIHGGGVDLIF 140 (213)
T ss_pred ----------------------------------------------------hhHHHHHHHHHHcCCCccEEeecCCCCc
Confidence 89999 8998 99999999999
Q ss_pred Cccccc----------------cccccEEEcccchhhcchhHHHHHHHH----------HHHHHHHhh-cCCC
Q psy6851 232 PYTEFK----------------DKYGKVRVHLSQKQQSLKLVVIMKEFF----------LNVKDHIRN-LKFP 277 (948)
Q Consensus 232 PHHEne----------------~h~G~l~i~geKMSKSLGN~vti~ef~----------l~ls~hyR~-l~~s 277 (948)
|||+|+ +|.|+|.++|+|||||+||++++.+++ .+++.+||+ ++|+
T Consensus 141 pH~~~~~a~~~a~~g~~~~~~~~h~~~v~~~g~KMSKs~Gn~v~~~dll~~~~~da~R~~~l~~~~~~~l~f~ 213 (213)
T cd00672 141 PHHENEIAQSEAATGKPFARYWLHTGHLTIDGEKMSKSLGNFITVRDALKKYDPEVLRLALLSSHYRSPLDFS 213 (213)
T ss_pred ChHHHHHHHHHHHhCCCCCcEEEEEEEEeccCcchhhcCCCccCHHHHHHHcCHHHHHHHHHhCCcCCCCCCC
Confidence 999986 466788899999999999999988752 336777777 6653
No 31
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=99.75 E-value=5.9e-19 Score=193.15 Aligned_cols=142 Identities=13% Similarity=0.052 Sum_probs=110.3
Q ss_pred ChHHHHHHHHHHHHHHhc--CCCCC---CccccccccHHHHHHHHHHHHHHcCCeeeeCCcEEEeeccCCCCCCCCcccc
Q psy6851 99 PPSEMFKMETDKYSQFDE--TVLPP---TVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPNHYYAKL 173 (948)
Q Consensus 99 ~~~el~~~~~~~f~~dm~--nV~~P---~~~pRvTe~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~f~~~g~~~YgKL 173 (948)
+..++++++++.|.+++. ||..+ .+.|...+|++.|+ +++++|.++|++|+..+.||++...|.++ +++
T Consensus 76 ~~~~~~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~-~~f~~L~~~G~iY~~~~~v~~~~~~f~~~-----~~l 149 (312)
T cd00668 76 DPKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVE-LIFSRLYEKGLIYRGTHPVRITEQWFFDM-----PKF 149 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHH-HHHHHHHHCCCEEeecceeEeeeeEEEEc-----HHH
Confidence 456677777778877776 99776 35566678999999 79999999999999999999999988774 332
Q ss_pred C---------------------------CccccccccccCCCCcCCCCCCCcccCCCCCCCCCCcceeEe----------
Q psy6851 174 V---------------------------PEAYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIFF---------- 216 (948)
Q Consensus 174 ~---------------------------P~DFaLWK~ak~gEp~wespWg~~~~~m~~~~~GRPGWHIEc---------- 216 (948)
. +.||++ ++.++||. |+|||||||
T Consensus 150 ~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~d~~i---------sR~~~WG~----------~~P~~~i~~Wfds~~~~~~ 210 (312)
T cd00668 150 KEKLLKALRRGKIVPEHVKNRMEAWLESLLDWAI---------SRQRYWGT----------PLPEDVFDVWFDSGIGPLG 210 (312)
T ss_pred HHHHHHHHhcCCcCChHHHHHHHHHHhCCCCeEE---------eccCCCCC----------cCCcccccchhhccHHHHH
Confidence 2 123333 34568885 999999999
Q ss_pred ----ecc---------CccccccccccCCccccc----------------cccccEEEcc-cchhhcchhHHHHHHHHH
Q psy6851 217 ----YGT---------RETGICRQDELFPYTEFK----------------DKYGKVRVHL-SQKQQSLKLVVIMKEFFL 265 (948)
Q Consensus 217 ----LG~---------~dih~GG~DL~FPHHEne----------------~h~G~l~i~g-eKMSKSLGN~vti~ef~l 265 (948)
++. .|+|++|.|++||||+++ ..+|+|.+.| +|||||+||+|++.+++.
T Consensus 211 ~~~~~~~~~~~~~~~~~di~~~G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~KmSKS~gn~v~~~d~~~ 289 (312)
T cd00668 211 SLGYPEEKEWFKDSYPADWHLIGKDILRGWANFWITMLVALFGEIPPKNLLVHGFVLDEGGQKMSKSKGNVIDPSDVVE 289 (312)
T ss_pred HcCCCccchhhhhcCCceEEEEecchhhhHHHHHHHHHHHhcCCCCcceeEECcEEEcCCCccccccCCCcCCHHHHHH
Confidence 222 279999999999999975 1137777777 999999999999988754
No 32
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.71 E-value=1.3e-18 Score=191.10 Aligned_cols=59 Identities=8% Similarity=-0.064 Sum_probs=50.5
Q ss_pred ccHHHHHHHHHHHHhhcCCCCCCeeecccccHHHHHHHHh----CcccCCC-cccCCcccccCCC
Q psy6851 626 TLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQ----TPKPAAA-KKAESSSDDDSSS 685 (948)
Q Consensus 626 ~~~~~~~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~----~l~~~g~-Y~~~gsvyfdvss 685 (948)
+++++|.+.|.++|++|||. ++..++++.+.|+++++|+ +|.++|+ |...+.||||+..
T Consensus 66 e~~~~~~~~~~~~~~~lgi~-~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~ 129 (314)
T cd00812 66 DWTEYNIKKMKEQLKRMGFS-YDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAPVNWCKLL 129 (314)
T ss_pred HHHHHHHHHHHHHHHHhccc-eecccccccCCHHHHHHHHHHHHHHHHCCCEEecCceeeeeCcc
Confidence 35789999999999999995 5766777778888888887 9999999 9999999999544
No 33
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=99.55 E-value=2.8e-15 Score=165.11 Aligned_cols=174 Identities=15% Similarity=0.161 Sum_probs=119.0
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccc--cHHHHHHHHHHHHHHcCCeeeeC-------------
Q psy6851 90 EAKEAQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSE--YIPEIVASYIEKIIANGLAYESN------------- 152 (948)
Q Consensus 90 ~~~a~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe--~IpeII~~~I~~LI~~G~AYes~------------- 152 (948)
+.+|.+.|++++++++.+.+.|.++++ || .++.++|.|+ |++.+. +++++|.++|++|+.+
T Consensus 54 ~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI-~~D~~~~tt~~~~~~~v~-~i~~~L~ekG~iY~~~~~~~yc~~~~~~l 131 (319)
T cd00814 54 EQKAEEEGVTPQELCDKYHEIFKDLFKWLNI-SFDYFIRTTSPRHKEIVQ-EFFKKLYENGYIYEGEYEGLYCVSCERFL 131 (319)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHcCC-cCCCCeeCCCHHHHHHHH-HHHHHHHHCCCEEeeeeeeeECCCCCcEe
Confidence 334445677778888888888888777 98 5788999887 999999 7999999999999865
Q ss_pred ------CcEEEeeccCCCCCCCCcccc----CCcccc-cccc-ccCCCC----cCCC-CCCCcccCCCC-----------
Q psy6851 153 ------GSVYFNVNAFDSQPNHYYAKL----VPEAYG-DTKT-LQEGEV----RGYP-PWPARIEGLAD----------- 204 (948)
Q Consensus 153 ------GsVYFDv~~f~~~g~~~YgKL----~P~DFa-LWK~-ak~gEp----~wes-pWg~~~~~m~~----------- 204 (948)
.++||++++|.++..+.+.+. -|..+. ..+. .+.|-+ +-.. .||.|.++-+.
T Consensus 132 ~e~~~~~~~ff~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~d~~isR~~~~WGipvp~~~~~~~yvWfda~~ 211 (319)
T cd00814 132 PEWREEEHYFFRLSKFQDRLLEWLEKNPDFIWPENARNEVLSWLKEGLKDLSITRDLFDWGIPVPLDPGKVIYVWFDALI 211 (319)
T ss_pred eEEEeeeeEEEEhHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHhCCCcccCCCccCcccCeeCCCCCCcEEEEehhhHH
Confidence 789999999876432212111 111100 0000 000101 1122 46655443221
Q ss_pred ---CCCCCCcceeEe-----eccC-ccccccccccCCccccc---------------cccccEEEcccchhhcchhHHHH
Q psy6851 205 ---ETPNRLKYHIFF-----YGTR-ETGICRQDELFPYTEFK---------------DKYGKVRVHLSQKQQSLKLVVIM 260 (948)
Q Consensus 205 ---~~~GRPGWHIEc-----LG~~-dih~GG~DL~FPHHEne---------------~h~G~l~i~geKMSKSLGN~vti 260 (948)
.+-|+++|+.+| .+.. ++|++|.|.+|+|+.++ .++|++.++|+|||||+||+|++
T Consensus 212 ~y~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~D~~~fh~~~~pa~l~~~~~~~~~~~~~~~~~~~~g~kmSkS~gn~i~~ 291 (319)
T cd00814 212 GYISATGYYNEEWGNSWWWKDGWPELVHFIGKDIIRFHAIYWPAMLLGAGLPLPTRIVAHGYLTVEGKKMSKSRGNVVDP 291 (319)
T ss_pred HHHHHcccccccccchhhhhcCCCceEEEEeechhhhhHHHHHHHHHhCCCCCCcEeeeeeeEEECCeeecccCCcccCH
Confidence 135788888765 3333 89999999999998864 45789999999999999999999
Q ss_pred HHHHH
Q psy6851 261 KEFFL 265 (948)
Q Consensus 261 ~ef~l 265 (948)
.+++.
T Consensus 292 ~~~l~ 296 (319)
T cd00814 292 DDLLE 296 (319)
T ss_pred HHHHH
Confidence 88864
No 34
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=99.52 E-value=2.9e-13 Score=158.38 Aligned_cols=238 Identities=15% Similarity=0.161 Sum_probs=146.2
Q ss_pred hcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccc--cHHHHHHHHHHHHHHcCCeeeeCCcEEEeeccCC---CC--
Q psy6851 95 QKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSE--YIPEIVASYIEKIIANGLAYESNGSVYFNVNAFD---SQ-- 165 (948)
Q Consensus 95 e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe--~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~f~---~~-- 165 (948)
+.|+++.++++.+.+.|.+++. ||. ++.++|.|+ |++.|. +++++|+++|++|+.++.|||++..=. +.
T Consensus 58 ~~g~~~~e~~~~~~~~~~~~l~~LgI~-~D~~~~t~~~~~~~~v~-~~~~~L~~kG~iY~~~~~v~~~~~~~~~l~~~~v 135 (530)
T TIGR00398 58 QEGLTPKELVDKYHEEFKDDWKWLNIS-FDRFIRTTDEEHKEIVQ-KIFQKLKENGYIYEKEIKQLYCPECEMFLPDRYV 135 (530)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHhCCC-CCCCccCCCHHHHHHHH-HHHHHHHHCCCEEEeeeEEEecCCCCcCCchhhh
Confidence 3455666666666667776666 986 788888888 999999 799999999999999999999985211 00
Q ss_pred -CCC-------Ccc-------------cc-------C--C-------------cc--------------ccccccc----
Q psy6851 166 -PNH-------YYA-------------KL-------V--P-------------EA--------------YGDTKTL---- 184 (948)
Q Consensus 166 -g~~-------~Yg-------------KL-------~--P-------------~D--------------FaLWK~a---- 184 (948)
|.- .|| +| . | .+ +..|...
T Consensus 136 ~g~cp~c~~~~~~g~~ce~cg~~~~~~~l~~p~~~~~~~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 215 (530)
T TIGR00398 136 EGTCPKCGSEDARGDHCEVCGRHLEPTELINPRCKICGAKPELRDSEHYFFRLSAFEKELEEWIRKNPESGSPASNVKNK 215 (530)
T ss_pred cCCCCCCCCcccccchhhhccccCCHHHhcCCccccCCCcceEEecceEEEEhHHHHHHHHHHHHhCCccCCCcHHHHHH
Confidence 000 000 00 0 0 00 1001000
Q ss_pred -----cCCCCcC----CCC-CCCcccCCCCC-----CCCCCcceeEee----cc---------Cc-----cccccccccC
Q psy6851 185 -----QEGEVRG----YPP-WPARIEGLADE-----TPNRLKYHIFFY----GT---------RE-----TGICRQDELF 231 (948)
Q Consensus 185 -----k~gEp~w----esp-Wg~~~~~m~~~-----~~GRPGWHIEcL----G~---------~d-----ih~GG~DL~F 231 (948)
..+-+.| ... ||-|++.+... ...-.|| +-++ |. .+ +|..|.|.+|
T Consensus 216 ~~~~l~~~l~d~~iSR~~~~WGipvP~~~~~~~yvW~da~~~y-~~~~~~~~~~~~~~~~~w~~~~~~~~v~~~G~Di~~ 294 (530)
T TIGR00398 216 AQNWLKGGLKDLAITRDLVYWGIPVPNDPNKVVYVWFDALIGY-ISSLGILSGDTEDWKKWWNNDEDAELIHFIGKDIVR 294 (530)
T ss_pred HHHHHhCCCCCccccCcCCCCCeeCCCCCCcEEEEeecchHHh-HhhhccccCChhhHHHhCCCCCCceEEEEEecccch
Confidence 0001112 233 77766544310 0000111 1011 10 12 7888999999
Q ss_pred Cccccc---------------cccccEEEcccchhhcchhHHHHHHHH----------HHHHHH-Hhh-cCCChhhhH--
Q psy6851 232 PYTEFK---------------DKYGKVRVHLSQKQQSLKLVVIMKEFF----------LNVKDH-IRN-LKFPATTVS-- 282 (948)
Q Consensus 232 PHHEne---------------~h~G~l~i~geKMSKSLGN~vti~ef~----------l~ls~h-yR~-l~~s~~~l~-- 282 (948)
.|.-.. ..+|+|.++|+|||||+||+|++.+++ .+++.. +.+ ++|+.+.+.
T Consensus 295 ~h~~~~~a~l~~~~~~~~~~~~~~g~v~~~g~KmSKS~Gn~i~~~d~i~~~g~D~lR~~l~~~~~~~~d~~f~~~~l~~~ 374 (530)
T TIGR00398 295 FHTIYWPAMLMGLGLPLPTQVFSHGYLTVEGGKMSKSLGNVVDPSDLLARFGADILRYYLLKERPLGKDGDFSWEDFVER 374 (530)
T ss_pred hHHHHHHHHHHhCCCCCCCEEEeeccEEECCceecccCCceecHHHHHHHcCchHHHHHHhhCCCCCCCCCCCHHHHHHH
Confidence 985531 457999999999999999999988753 113322 333 677765432
Q ss_pred -------H----HHhhH------------------HHhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhh
Q psy6851 283 -------S----FEKWT------------------QADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYL 333 (948)
Q Consensus 283 -------~----~~r~~------------------~ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yL 333 (948)
. +.|+. ..+..+...+..+...+..+| ++++++.|+..|+++++.+|.|+
T Consensus 375 ~n~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~a~-e~~~~~~a~~~l~~l~~~~n~Yi 453 (530)
T TIGR00398 375 VNADLANKLGNLLNRTLGFIKKYFNGVLPSEDITDEEDKKLLKLINEALEQIDEAI-ESFEFRKALREIMKLADRGNKYI 453 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCcccchhhHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHHH
Confidence 0 11110 012334556778889999999 89999999999999999999998
Q ss_pred cCC
Q psy6851 334 RGT 336 (948)
Q Consensus 334 d~~ 336 (948)
+..
T Consensus 454 ~~~ 456 (530)
T TIGR00398 454 DEN 456 (530)
T ss_pred hcC
Confidence 753
No 35
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=99.46 E-value=2.9e-14 Score=166.40 Aligned_cols=133 Identities=15% Similarity=0.064 Sum_probs=107.3
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCeeeccccc--HHHHHHHHhCcccCCC-c-ccCCcccccCCCCCccccccCCCCCcccc
Q psy6851 627 LPKHWEAEFHKDMADLNVLPPTVLTRVSEY--IPEIVASAQTPKPAAA-K-KAESSSDDDSSSEDEKPAVKAPAKPVAHA 702 (948)
Q Consensus 627 ~~~~~~~~f~~dm~~L~v~~p~~~~rvse~--i~~ii~~i~~l~~~g~-Y-~~~gsvyfdvssede~pa~k~~~k~~~~~ 702 (948)
++.++.+.|.+|+++|||.. +.+++.++. .+.+.+.+++|.++|+ | +.+|++||+++.
T Consensus 178 ~~~~~~~~~~~~l~~LgI~~-D~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~~Ga~~~~~~~----------------- 239 (507)
T PRK01611 178 AVDISLDEIKEDLDRLGVHF-DVWFSESELYYNGKVDEVVEDLKEKGLLYVESDGALWVRLTE----------------- 239 (507)
T ss_pred HHHHHHHHHHHHHHHcCCee-eEEeecCcchhcchHHHHHHHHHHCCCEEEeeCCcEEEEchh-----------------
Confidence 45689999999999999986 888888864 5689999999999999 9 889999998755
Q ss_pred cchhhhhhcCCCCCCCCCCCCCCcCcCCCCcccccccChhhhhhcCCCCCCCCCCCCCcccccCCCCchhhccCCCCCCc
Q psy6851 703 AEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSS 782 (948)
Q Consensus 703 ~~~~~akk~eSSsd~~ssse~e~~a~~~~~k~~~~a~~~~~~k~~~ssSd~~Sssede~p~~k~~~~~~~~~~~~~~~~~ 782 (948)
+. |
T Consensus 240 --------------~~---------------------------------~------------------------------ 242 (507)
T PRK01611 240 --------------FG---------------------------------D------------------------------ 242 (507)
T ss_pred --------------hC---------------------------------C------------------------------
Confidence 21 0
Q ss_pred cccccCCCCCCcceeeccCCCCCcccCCCCCCCCchhHHHHHHHHhhcCCCceeecCCCCCCCCCChhHHHHHhccCCC-
Q psy6851 783 QEASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLPTH- 861 (948)
Q Consensus 783 ~~~~~K~~~~DfaLwk~~k~~ep~w~spwg~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FPHH~ne~aq~e~~~~~- 861 (948)
+.|++|||. .|.+.|.++ .++||++|... ++.-|+|++++-++-|+++. +.++++...
T Consensus 243 --------~~~~vl~ks--dG~~~Y~t~----Dia~~~~k~~~----~d~~i~V~g~~q~~hf~~~~---~~~~~lg~~~ 301 (507)
T PRK01611 243 --------DKDRVLIKS--DGTYTYFTR----DIAYHLYKFER----FDRVIYVVGADHHGHFKRLK---AALKALGYDP 301 (507)
T ss_pred --------CCCeEEEEC--CCCccchHH----HHHHHHHHHhh----cCEEEEEECCChHHHHHHHH---HHHHHcCCCc
Confidence 016999997 688887766 89999999965 78889999999999999997 444443211
Q ss_pred ---C------------CCCccccchhhhH
Q psy6851 862 ---D------------QEGKELSKGLAKK 875 (948)
Q Consensus 862 ---~------------~~g~kmsKsl~n~ 875 (948)
. -+|+|||||+||+
T Consensus 302 ~~~~~~~h~~~glv~~~~g~KMSkR~Gn~ 330 (507)
T PRK01611 302 DALEVLLHQMVGLVRGGEGVKMSTRAGNV 330 (507)
T ss_pred ccceEEEEEEEEeeECCCCCcccCCCCce
Confidence 1 2678999999999
No 36
>PLN02224 methionine-tRNA ligase
Probab=99.46 E-value=1e-12 Score=156.53 Aligned_cols=250 Identities=13% Similarity=0.140 Sum_probs=159.8
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccc--cHHHHHHHHHHHHHHcCCeeeeCCcEEEe
Q psy6851 83 AELAAAQEAKEAQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSE--YIPEIVASYIEKIIANGLAYESNGSVYFN 158 (948)
Q Consensus 83 ~~~a~~~~~~a~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe--~IpeII~~~I~~LI~~G~AYes~GsVYFD 158 (948)
.+.-..-+.+|.+.|+++.++++++...|.+.++ || .++.++|.|+ |+..+. ++..+|.++|+.|..+..+||+
T Consensus 116 DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~~~~~l~I-~~D~f~rTt~~~h~~~vq-~~f~~L~~~G~Iy~~~~~~~yc 193 (616)
T PLN02224 116 DEHGEKIATSAAANGRNPPEHCDIISQSYRTLWKDLDI-AYDKFIRTTDPKHEAIVK-EFYARVFANGDIYRADYEGLYC 193 (616)
T ss_pred CCcchHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCC-CCCcCeeCCCHHHHHHHH-HHHHHHHHCCCEEEeeeeeeec
Confidence 3333333444566788888888888888887777 88 7899999999 999998 7999999999999998899998
Q ss_pred eccCCCCCCC------CccccC--C-------------ccc----cccccc------------------cCCCC----cC
Q psy6851 159 VNAFDSQPNH------YYAKLV--P-------------EAY----GDTKTL------------------QEGEV----RG 191 (948)
Q Consensus 159 v~~f~~~g~~------~YgKL~--P-------------~DF----aLWK~a------------------k~gEp----~w 191 (948)
++-=. +..+ ...++. | .+| ..|=.. +.|=+ .=
T Consensus 194 ~~ce~-f~~~~~l~~~~~~~~~~~~~~~~~e~~~ff~Ls~~~~~L~~~~~~~~~~~~p~~~~~~~~~~l~~gL~d~~ISR 272 (616)
T PLN02224 194 VNCEE-YKDEKELLENNCCPVHQMPCVARKEDNYFFALSKYQKPLEDILAQNPRFVQPSYRLNEVQSWIKSGLRDFSISR 272 (616)
T ss_pred CCCCC-CCCHHHHcCCCCCCCCCCcceEEecceEEEEhHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCCCccccC
Confidence 75321 1110 000110 0 001 001000 01100 11
Q ss_pred C-CCCCCcccCCCCC--------------CCCC----CcceeE-eec-cCccccccccccCCccccc-------------
Q psy6851 192 Y-PPWPARIEGLADE--------------TPNR----LKYHIF-FYG-TRETGICRQDELFPYTEFK------------- 237 (948)
Q Consensus 192 e-spWg~~~~~m~~~--------------~~GR----PGWHIE-cLG-~~dih~GG~DL~FPHHEne------------- 237 (948)
. ..||-|.++.+.. +-|. .||-.. .++ +.++|..|.|++|+|+-.+
T Consensus 273 ~~~~WGIpvP~~~~~viYVWfDAl~~Yls~~~~~~~~~~~~~~~~~~w~~~v~~iGKDii~fH~i~wpa~l~~~g~~~P~ 352 (616)
T PLN02224 273 ALVDWGIPVPDDDKQTIYVWFDALLGYISALTEDNKQQNLETAVSFGWPASLHLIGKDILRFHAVYWPAMLMSAGLELPK 352 (616)
T ss_pred CCCCCceECCCCCCcEEEEehhhHHHHHHHhcccccccccchhhccCCCcceEEEeecccccHHHHHHHHHHHCCCCCCc
Confidence 2 3698877544310 0111 222111 011 2378999999999998754
Q ss_pred --cccccEEEcccchhhcchhHHHHHHH-----------HHHHHHHHhh-cCCChhhhH---------H----HHhhHH-
Q psy6851 238 --DKYGKVRVHLSQKQQSLKLVVIMKEF-----------FLNVKDHIRN-LKFPATTVS---------S----FEKWTQ- 289 (948)
Q Consensus 238 --~h~G~l~i~geKMSKSLGN~vti~ef-----------~l~ls~hyR~-l~~s~~~l~---------~----~~r~~~- 289 (948)
..+|+|.++|+|||||+||+|...++ |++....+.+ .+|+++.+. . +.|...
T Consensus 353 ~i~~~g~l~~eG~KMSKS~GN~i~p~e~l~~ygaD~~R~yLl~~~p~~~d~~fs~~~~~~~~NseLan~lgNll~R~l~~ 432 (616)
T PLN02224 353 MVFGHGFLTKDGMKMGKSLGNTLEPFELVQKFGPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGL 432 (616)
T ss_pred EEEecccEecCCccccccCCccCCHHHHHHHcCcHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34789999999999999999987764 3322233444 678776321 1 122110
Q ss_pred -----------------HhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcCC
Q psy6851 290 -----------------ADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGT 336 (948)
Q Consensus 290 -----------------ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~~ 336 (948)
.+..+...+..+...+.++| +.+++..|+..|+++++.+|.|+...
T Consensus 433 ~~k~~~~~~~~~~~~~~~d~~l~~~l~~li~~v~~~m-e~~~~~~Al~~i~el~~~~N~Yi~~~ 495 (616)
T PLN02224 433 LKKNCESTLVEDSTVAAEGVPLKDTVEKLVEKAQTNY-ENLSLSSACEAVLEIGNAGNTYMDQR 495 (616)
T ss_pred HHHhcCCcCCCccccccccHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHhC
Confidence 12234456677888999999 89999999999999999999999753
No 37
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=99.44 E-value=3.2e-12 Score=154.07 Aligned_cols=243 Identities=17% Similarity=0.165 Sum_probs=149.6
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHhc--CCCCCCcccccc--ccHHHHHHHHHHHHHHcCCeeeeCCcEEEeeccCCCC
Q psy6851 90 EAKEAQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVS--EYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQ 165 (948)
Q Consensus 90 ~~~a~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvT--e~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~f~~~ 165 (948)
+.+|.+.|+++.++++++++.|.+++. ||. ++.++|.| +|+..++ +++++|+++|++|...+.|||++..=.-+
T Consensus 56 ~~~A~~~g~~p~e~~~~~~~~~~~~~~~l~i~-~d~f~rtt~~~h~~~v~-~~~~~L~~~G~iy~~~~~~~y~~~~~~~l 133 (673)
T PRK00133 56 MLKAEKEGITPEELIARYHAEHKRDFAGFGIS-FDNYGSTHSEENRELAQ-EIYLKLKENGYIYEKTIEQLYDPEKGMFL 133 (673)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCC-CCCCccCCcHHHHHHHH-HHHHHHHHCCCEEEeeeEEEEeCCCCCCc
Confidence 334445678888888888888887777 986 67888888 5999999 79999999999999999999997632100
Q ss_pred CC-------------CCccc--------cCC---------------------------ccccc-----------cccc--
Q psy6851 166 PN-------------HYYAK--------LVP---------------------------EAYGD-----------TKTL-- 184 (948)
Q Consensus 166 g~-------------~~YgK--------L~P---------------------------~DFaL-----------WK~a-- 184 (948)
.. +.||. +.| .+|.. |...
T Consensus 134 ~~~~v~g~cp~C~~~d~~g~~ce~cg~~~~~~~l~~~~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~ 213 (673)
T PRK00133 134 PDRFVKGTCPKCGAEDQYGDNCEVCGATYSPTELINPKSAISGATPVLKESEHFFFKLPRFEEFLKEWITRSGELQPNVA 213 (673)
T ss_pred cchheecccCCCCCcccCCchhhhccccCChHhhcCCccccCCCcceEEecceEEEEHHHHHHHHHHHHhcCCCCCHHHH
Confidence 00 01221 000 00100 1000
Q ss_pred -------cCCCCcC----CCCC-CCcccCCCCC-----C----------CC--CC----cceeEee-cc--C-ccccccc
Q psy6851 185 -------QEGEVRG----YPPW-PARIEGLADE-----T----------PN--RL----KYHIFFY-GT--R-ETGICRQ 227 (948)
Q Consensus 185 -------k~gEp~w----espW-g~~~~~m~~~-----~----------~G--RP----GWHIEcL-G~--~-dih~GG~ 227 (948)
+.|-+.| ...| |.|.++.+.. . .| .. .|-- .. .. . .+|.-|.
T Consensus 214 ~~~~~~l~~~l~d~~ISR~~~W~GipvP~~~~~~iyVW~dal~~Yl~~~~~~~~~~~~~~~~~-~w~~~~~~~~v~~iGk 292 (673)
T PRK00133 214 NKMKEWLEEGLQDWDISRDAPYFGFEIPGAPGKVFYVWLDAPIGYISSTKNLCDKRGGLDWDE-YWKKDSDTELYHFIGK 292 (673)
T ss_pred HHHHHHHhCCCcccceeeeCCccceECCCCCCeEEEEcccchhhhhHHHhhhcccccchhHHH-hcCCCCCceEEEEEee
Confidence 0111111 2347 7766533210 0 00 00 0000 00 00 1 2677788
Q ss_pred cccCCccccc---------------cccccEEEcccchhhcchhHHHHHHH-----------HHHHHHHHh-h-cCCChh
Q psy6851 228 DELFPYTEFK---------------DKYGKVRVHLSQKQQSLKLVVIMKEF-----------FLNVKDHIR-N-LKFPAT 279 (948)
Q Consensus 228 DL~FPHHEne---------------~h~G~l~i~geKMSKSLGN~vti~ef-----------~l~ls~hyR-~-l~~s~~ 279 (948)
|.++.|-=.+ ..+|||.++|+|||||+||+|+..++ |++...... + .+|+.+
T Consensus 293 Di~~fH~i~wpa~l~a~g~~lP~~v~~hg~v~~~G~KMSKS~GNvV~p~dlie~ygaDalR~~ll~~~~~~~~D~~Fs~~ 372 (673)
T PRK00133 293 DIIYFHTLFWPAMLEGAGYRLPTNVFAHGFLTVEGAKMSKSRGTFIWARTYLDHLDPDYLRYYLAAKLPETIDDLDFNWE 372 (673)
T ss_pred cchhHHHHHHHHHHHhCCCCCCCEEeeeccEEecCCcccccCCcccCHHHHHHHcCchHHHHHHHhcCCCCCCCCCCCHH
Confidence 9888663221 34799999999999999999988765 232222233 2 677765
Q ss_pred hhH---------H----HHhhH--------------HHhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhh
Q psy6851 280 TVS---------S----FEKWT--------------QADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIY 332 (948)
Q Consensus 280 ~l~---------~----~~r~~--------------~ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~y 332 (948)
.+. . +.|.. ..+..+...+.++...+..+| ++|++..|+..|+++++.+|.|
T Consensus 373 ~~~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~~~~~d~~ll~~l~~~~~~v~~a~-e~~~~~~a~~~l~~l~~~~N~y 451 (673)
T PRK00133 373 DFQQRVNSELVGKVVNFASRTAGFINKRFDGKLPDALADPELLEEFEAAAEKIAEAY-EAREFRKALREIMALADFANKY 451 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHH
Confidence 421 0 11111 113344566778889999999 7899999999999999999999
Q ss_pred hcCC
Q psy6851 333 LRGT 336 (948)
Q Consensus 333 Ld~~ 336 (948)
++..
T Consensus 452 i~~~ 455 (673)
T PRK00133 452 VDDN 455 (673)
T ss_pred HHhc
Confidence 8753
No 38
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=99.43 E-value=3.4e-12 Score=150.27 Aligned_cols=238 Identities=12% Similarity=0.109 Sum_probs=144.7
Q ss_pred HHhcCCChHHHHHHHHHHHHHHhc--CCCCCCcccccc--ccHHHHHHHHHHHHHHcCCeeeeCCcEEEeeccCC----C
Q psy6851 93 EAQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVS--EYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFD----S 164 (948)
Q Consensus 93 a~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvT--e~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~f~----~ 164 (948)
|.+.|+++.++++++++.|.+++. || .+++++|.| +|++.++ +++++|+++|++|..++.|||++.-=. .
T Consensus 61 a~~~g~~~~~~~~~~~~~~~~~~~~l~i-~~d~~~~t~~~~~~~~~~-~~~~~L~~~G~~y~~~~~~~~~~~~~~~l~~~ 138 (556)
T PRK12268 61 AKKEGVTPQELADKYHEEHKEDFKKLGI-SYDLFTRTTSPNHHEVVQ-EFFLKLYENGYIYKKTIEQAYCPSDGRFLPDR 138 (556)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHcCC-cCCCCcCCCCHHHHHHHH-HHHHHHHHCCCeEEeeeEEEecCCCCcCcCcc
Confidence 334566666777777777877777 99 579999999 9999999 799999999999999999999974210 0
Q ss_pred C--C-------CCCcccc--------------------C---C--cccccc-------c-----ccc-------------
Q psy6851 165 Q--P-------NHYYAKL--------------------V---P--EAYGDT-------K-----TLQ------------- 185 (948)
Q Consensus 165 ~--g-------~~~YgKL--------------------~---P--~DFaLW-------K-----~ak------------- 185 (948)
+ | ...||.. + | ..-..| + ..+
T Consensus 139 ~v~g~cp~c~~~~~~G~~ce~cg~~~~~~~l~~p~~~~~~~~~e~~~~~qwF~~l~~~~~~l~~~~~~~~~~p~~~~~~~ 218 (556)
T PRK12268 139 YVEGTCPYCGYEGARGDQCDNCGALLDPTDLINPRSKISGSTPEFRETEHFFLDLPAFAERLRAWIESSGDWPPNVLNFT 218 (556)
T ss_pred ceeccCCCCCCcccCCchhhhccccCChHHhcCCccccCCCcCeEEecceEEEEhHHHHHHHHHHHhhccCCCHHHHHHH
Confidence 0 0 0112321 0 0 000000 0 000
Q ss_pred ----C-CCCcC----CCCCCCccc--CCCCC--------------C-------CC-CCc---ceeEe-eccCcccccccc
Q psy6851 186 ----E-GEVRG----YPPWPARIE--GLADE--------------T-------PN-RLK---YHIFF-YGTRETGICRQD 228 (948)
Q Consensus 186 ----~-gEp~w----espWg~~~~--~m~~~--------------~-------~G-RPG---WHIEc-LG~~dih~GG~D 228 (948)
. +=+.| ...||-|++ +-.+. + .| .+. |. + -|..+.|.-|.|
T Consensus 219 ~~~l~~~l~Dw~ISR~~~WGipiP~~~~~~~~iyvW~da~~~y~~~~~~~~~~~g~~~~~~~~w--~ds~~~~~~~~G~D 296 (556)
T PRK12268 219 LNWLKEGLKPRAITRDLDWGIPVPWPGFEGKVFYVWFDAVIGYISASKEWAERTGDPEAWKEFW--LDPETKSYYFIGKD 296 (556)
T ss_pred HHHHhCCCCCcCceeeCCCCeeCCCCCCCCcEEEEeehHhhHHHHHHHHHHHhcCCchHHHHHh--CCCCCeEEEEEeec
Confidence 0 00112 234777765 22100 0 00 000 10 0 011135666788
Q ss_pred ccCCccc-----------------cccccccEEEcccchhhcchhHHHHHHH-----------HHHHHHHH-hhcCCChh
Q psy6851 229 ELFPYTE-----------------FKDKYGKVRVHLSQKQQSLKLVVIMKEF-----------FLNVKDHI-RNLKFPAT 279 (948)
Q Consensus 229 L~FPHHE-----------------ne~h~G~l~i~geKMSKSLGN~vti~ef-----------~l~ls~hy-R~l~~s~~ 279 (948)
.++-|.- +-..+|||.++|+|||||+||+|+..++ |++..+-. +.++|+.+
T Consensus 297 ~~~Fh~~~~p~~l~~~~~~~~~P~~v~~~G~v~~~G~KMSKS~GN~I~p~dli~~yGaDalR~~ll~~~~~~~d~~f~~~ 376 (556)
T PRK12268 297 NIPFHSIIWPAMLLGSGEPLKLPDEIVSSEYLTLEGGKFSKSRGWGIWVDDALERYPPDYLRYYLAANAPENSDTDFTWE 376 (556)
T ss_pred cCcchHHHHHHHHHhcCCCCCCCCEeeccCCEEECCeeeccCCCcccCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCHH
Confidence 8765532 1245799999999999999999988765 23112222 22677765
Q ss_pred hhH---------HH----HhhH-----------------HHhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHH
Q psy6851 280 TVS---------SF----EKWT-----------------QADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQV 329 (948)
Q Consensus 280 ~l~---------~~----~r~~-----------------~ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVrai 329 (948)
.+. .+ .|.. ..+..+...+..+...+..+| ++|++..|+..|+++++.+
T Consensus 377 ~~~~~~~~~~~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-~~~~~~~a~~~l~~~~~~~ 455 (556)
T PRK12268 377 EFVRRVNSELADKYGNLVNRVLSFIEKYFGGIVPPGELGDEDRELIAEAEALFKEVGELL-EAGEFKKALEEIMELAREA 455 (556)
T ss_pred HHHHHHhHHhhhhHHHHHHHHHHHHHHhcCCcCCCCcCCcccHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHH
Confidence 331 11 1110 112334456677889999999 8899999999999999999
Q ss_pred HhhhcC
Q psy6851 330 NIYLRG 335 (948)
Q Consensus 330 N~yLd~ 335 (948)
|.|++.
T Consensus 456 n~yi~~ 461 (556)
T PRK12268 456 NKYLDE 461 (556)
T ss_pred HHHHHc
Confidence 999874
No 39
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.43 E-value=1.1e-14 Score=161.88 Aligned_cols=56 Identities=11% Similarity=0.020 Sum_probs=52.3
Q ss_pred ccHHHHHHHHHHHHhhcCCCCC---CeeecccccHHHHHHHHhCcccCCC-cccCCcccc
Q psy6851 626 TLPKHWEAEFHKDMADLNVLPP---TVLTRVSEYIPEIVASAQTPKPAAA-KKAESSSDD 681 (948)
Q Consensus 626 ~~~~~~~~~f~~dm~~L~v~~p---~~~~rvse~i~~ii~~i~~l~~~g~-Y~~~gsvyf 681 (948)
+++++|+++|.++|++|||..+ ...|..++|++.|..++.+|.++|+ |..++.|||
T Consensus 84 ~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~ 143 (338)
T cd00818 84 EFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGYKVVPW 143 (338)
T ss_pred HHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccCCeeee
Confidence 5788999999999999999887 6778888999999999999999999 999999999
No 40
>cd07963 Anticodon_Ia_Cys Anticodon-binding domain of cysteinyl tRNA synthetases. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA.
Probab=99.40 E-value=2e-12 Score=128.77 Aligned_cols=124 Identities=21% Similarity=0.227 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhHcccccccccCCCCCCCCCCCCcc
Q psy6851 299 IQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGTPNQLLLRDIGAYVTKILTVFGCIGDVKNIGFPLGGTGVESTN 378 (948)
Q Consensus 299 ~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~~~~~~lL~~i~~~V~~mL~VLGL~~~~~~ig~~~~~~~~~~ss 378 (948)
..+...|.+||+||||||.||++||++++.+|.+++.. ...+..+...+..|+.||||...... .|.... +.....
T Consensus 32 ~~~~~~f~~Al~DDlNt~~Ala~l~~l~k~~n~~~~~~--~~~~~~~~~~l~~~~~vLGl~~~~~~-~~~~~~-~~~~~~ 107 (156)
T cd07963 32 EPFAERFIAAMDDDFNTPEALAVLFELAREINRLKKED--IEKAAALAALLKALGGVLGLLQQDPE-AFLQGG-TGEGGL 107 (156)
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHhccCCCCCCHH-HHHhcc-cccccc
Confidence 45678999999999999999999999999999988654 22355566778889999999431110 010000 000001
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCCCeeeecCCcceEE
Q psy6851 379 LEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLRDEVLPNVGVRLEDIEGKSYIT 438 (948)
Q Consensus 379 ~eel~~~~Ld~Lv~~R~~iR~~AR~~~~LKLyNSldr~ReeflP~~G~~V~D~hARTyVs 438 (948)
.. ..|+.|++.|.++|+. |.|..+|++|+.+ ...|+.|.|+..+|.|.
T Consensus 108 ~~----~~v~~Ll~~R~~aR~~-------Kdf~~AD~IRd~L-~~~Gi~i~Dt~~Gt~w~ 155 (156)
T cd07963 108 SV----AEIEALIAQRNQARKA-------KDWAEADRIRDEL-AAQGIILEDSPEGTTWR 155 (156)
T ss_pred CH----HHHHHHHHHHHHHHHh-------cCHHHHHHHHHHH-HHCCcEEEECCCCceee
Confidence 11 1378888887777766 9999999999997 78999999996667663
No 41
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=99.37 E-value=1.5e-11 Score=147.63 Aligned_cols=241 Identities=14% Similarity=0.138 Sum_probs=148.8
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccc--cHHHHHHHHHHHHHHcCCeeeeCCcEEEeec--cC-CC
Q psy6851 92 KEAQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSE--YIPEIVASYIEKIIANGLAYESNGSVYFNVN--AF-DS 164 (948)
Q Consensus 92 ~a~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe--~IpeII~~~I~~LI~~G~AYes~GsVYFDv~--~f-~~ 164 (948)
+|.+.|+++.++++.+.+.|.++++ || .++.+.|.|+ |+..+. +++++|.++|++|...-.++|++. .| ++
T Consensus 60 ~A~~~g~~~~e~~d~~~~~fk~~l~~lgI-~~D~f~rTt~~~h~~~v~-~~~~~L~~kG~IY~~~~~~~yc~~~~~~l~~ 137 (648)
T PRK12267 60 AAEKAGKTPQEYVDEISAGFKELWKKLDI-SYDKFIRTTDERHKKVVQ-KIFEKLYEQGDIYKGEYEGWYCVSCETFFTE 137 (648)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHcCC-CCCCCeeCCCHHHHHHHH-HHHHHHHHCCCEEEeeEEEeecCCCCccCCh
Confidence 3445566666777777777777776 99 5799999998 998888 799999999999998778888754 22 11
Q ss_pred C----CC---------------CCccccCC------------cccccccc----------ccCCCCcC----C-CCCCCc
Q psy6851 165 Q----PN---------------HYYAKLVP------------EAYGDTKT----------LQEGEVRG----Y-PPWPAR 198 (948)
Q Consensus 165 ~----g~---------------~~YgKL~P------------~DFaLWK~----------ak~gEp~w----e-spWg~~ 198 (948)
. ++ |-|=+|+. .+| .|.. .+.|-+.| . -+||-|
T Consensus 138 ~~l~~~~~c~~cg~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~-~~p~~~~~~~~~~~l~~~l~D~~ISR~~~~WGip 216 (648)
T PRK12267 138 SQLVDGGKCPDCGREVELVKEESYFFRMSKYQDRLLEYYEENPDF-IQPESRKNEMINNFIKPGLEDLSISRTSFDWGIP 216 (648)
T ss_pred HHhccCCcCCCCCCcCeEEecceEEEEcHHHHHHHHHHHhhCCcc-cCCHHHHHHHHHHHhhCCCCCcccCCCCCCcceE
Confidence 0 00 00111110 000 0100 01111112 1 258877
Q ss_pred ccCCCCC--------------CCCCCcceeE-e--eccCccccccccccCCccccc---------------cccccEEEc
Q psy6851 199 IEGLADE--------------TPNRLKYHIF-F--YGTRETGICRQDELFPYTEFK---------------DKYGKVRVH 246 (948)
Q Consensus 199 ~~~m~~~--------------~~GRPGWHIE-c--LG~~dih~GG~DL~FPHHEne---------------~h~G~l~i~ 246 (948)
.|+.+.. +-|.|...-+ + +=+.++|.-|.|.++-|--.. ..+|||.++
T Consensus 217 vP~~~~~v~yVWfDA~~~y~s~~~~~~~~~~~~~~~wp~~~~~~GkDii~fH~i~wpa~l~~~~~~~p~~v~~hg~l~~e 296 (648)
T PRK12267 217 VPFDPKHVVYVWIDALLNYITALGYGSDDDELFKKFWPADVHLVGKDILRFHAIYWPIMLMALGLPLPKKVFAHGWWLMK 296 (648)
T ss_pred CCCCCCCEEEEcccchHHHHHHcCCCCCCchHHHhhcccceEEEeeeecchhHHHHHHHHHhCCCCCCcEEEecceEEEC
Confidence 6543210 1122210000 0 002267888999987554321 347999999
Q ss_pred ccchhhcchhHHHHHHH-----------HHHHHHHHhh-cCCChhhhH-------------HHHhhH-------------
Q psy6851 247 LSQKQQSLKLVVIMKEF-----------FLNVKDHIRN-LKFPATTVS-------------SFEKWT------------- 288 (948)
Q Consensus 247 geKMSKSLGN~vti~ef-----------~l~ls~hyR~-l~~s~~~l~-------------~~~r~~------------- 288 (948)
|+|||||+||+|+..++ |++....+.+ .+|+.+.+. .+.|..
T Consensus 297 g~KMSKS~GN~i~p~d~l~~ygaD~lR~~L~~~~~~~~D~~fs~~~~~~~~n~~l~~~lgNl~~R~~~~~~~~~~~~~p~ 376 (648)
T PRK12267 297 DGKMSKSKGNVVDPEELVDRYGLDALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGNLLNRTVAMINKYFDGEIPA 376 (648)
T ss_pred CceecccCCcccCHHHHHHHcCCcHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcCCC
Confidence 99999999999987764 3322233444 778776531 012211
Q ss_pred -----HHhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcCC
Q psy6851 289 -----QADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGT 336 (948)
Q Consensus 289 -----~ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~~ 336 (948)
..+..+...+..+..++..+| ++|+++.|+..|+++++.+|.|++..
T Consensus 377 ~~~~~~~D~~ll~~l~~~~~~v~~~~-e~~~~~~al~~i~~~~~~~N~Yi~~~ 428 (648)
T PRK12267 377 PGNVTEFDEELIALAEETLKNYEELM-EELQFSRALEEVWKLISRANKYIDET 428 (648)
T ss_pred CCCCchhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 112334556778889999999 78999999999999999999999754
No 42
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.33 E-value=9.8e-13 Score=137.40 Aligned_cols=58 Identities=12% Similarity=-0.037 Sum_probs=54.8
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cccCCcccccCCC
Q psy6851 627 LPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KKAESSSDDDSSS 685 (948)
Q Consensus 627 ~~~~~~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvss 685 (948)
++..+.+.|.+++++|||. ++.++|.|++++.|+++|+.|+++|+ |+.+|.+||++++
T Consensus 66 ~~~~~~~~~~~~~~~L~i~-~d~~~~es~~~~~~~~~i~~L~~~g~~~~~~g~~~~~~~~ 124 (212)
T cd00671 66 LVEESIKADLETYGRLDVR-FDVWFGESSYLGLMGKVVELLEELGLLYEEDGALWLDLTE 124 (212)
T ss_pred HHHHHHHHHHHHHHHhCCc-CceecchhhhhhHHHHHHHHHHHCCCEEEeCCcEEEechh
Confidence 5678999999999999999 69999999999999999999999999 9999999999876
No 43
>PLN02224 methionine-tRNA ligase
Probab=99.32 E-value=1.8e-12 Score=154.37 Aligned_cols=59 Identities=8% Similarity=-0.033 Sum_probs=54.8
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCeeecccc--cHHHHHHHHhCcccCCC-cccCCcccccCCCC
Q psy6851 627 LPKHWEAEFHKDMADLNVLPPTVLTRVSE--YIPEIVASAQTPKPAAA-KKAESSSDDDSSSE 686 (948)
Q Consensus 627 ~~~~~~~~f~~dm~~L~v~~p~~~~rvse--~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvsse 686 (948)
+++.|.+.|.+.+++||| .+|.++|+|+ |...+..+..+|.++|+ |.....+||+++++
T Consensus 136 ~~~~~~~~~~~~~~~l~I-~~D~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce 197 (616)
T PLN02224 136 HCDIISQSYRTLWKDLDI-AYDKFIRTTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCE 197 (616)
T ss_pred HHHHHHHHHHHHHHHcCC-CCCcCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCC
Confidence 567899999999999999 5699999998 99999999999999999 99999999999885
No 44
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.27 E-value=3.1e-12 Score=141.08 Aligned_cols=152 Identities=14% Similarity=0.069 Sum_probs=105.4
Q ss_pred HHhcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHH----HHHHcCCeeeeCCcEEEeeccCCCCC
Q psy6851 93 EAQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIE----KIIANGLAYESNGSVYFNVNAFDSQP 166 (948)
Q Consensus 93 a~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~----~LI~~G~AYes~GsVYFDv~~f~~~g 166 (948)
|.+.|++..++++.+.+.|.+++. || .++..++++.++|+++ ++|+ +|.++|++|...+.|||++..-
T Consensus 57 a~~~g~~~~e~~~~~~~~~~~~~~~lgi-~~d~~~~~~t~~~~~~-~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~---- 130 (314)
T cd00812 57 AIKIGRDPEDWTEYNIKKMKEQLKRMGF-SYDWRREFTTCDPEYY-KFTQWLFLKLYEKGLAYKKEAPVNWCKLLD---- 130 (314)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHhcc-ceecccccccCCHHHH-HHHHHHHHHHHHCCCEEecCceeeeeCccc----
Confidence 344567777777777788887777 98 5677788888899999 6887 9999999999999999995431
Q ss_pred CCCccccC------------------C----ccccccccccCCCCcCCCCCCCcccCCCCCCCCCCcceeEee-------
Q psy6851 167 NHYYAKLV------------------P----EAYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIFFY------- 217 (948)
Q Consensus 167 ~~~YgKL~------------------P----~DFaLWK~ak~gEp~wespWg~~~~~m~~~~~GRPGWHIEcL------- 217 (948)
|-|=+|+ | ..+..|-. .+=...||.|.| + +|+|+|.
T Consensus 131 -~~f~~l~~~~~~~~l~~~l~~~~~~p~~~~~~~~~~l~-----isR~~~wGipvP-------~--~~~i~~w~ds~~y~ 195 (314)
T cd00812 131 -QWFLKYSETEWKEKLLKDLEKLDGWPEEVRAMQENWIG-----CSRQRYWGTPIP-------W--TDTMESLSDSTWYY 195 (314)
T ss_pred -eEEEEcCcHHHHHHHHHHHHhcCcCCHHHHHHHHHHhe-----eeeecCCcCCcC-------c--ccccccccccHHHH
Confidence 1122221 1 00111111 112346776542 1 5666650
Q ss_pred ---------------------------ccCccccccccccCCccccc---------------------cccccEEEcccc
Q psy6851 218 ---------------------------GTRETGICRQDELFPYTEFK---------------------DKYGKVRVHLSQ 249 (948)
Q Consensus 218 ---------------------------G~~dih~GG~DL~FPHHEne---------------------~h~G~l~i~geK 249 (948)
.+.|+|++|.|++++|+.+. .++|+|+++|+|
T Consensus 196 ~~y~~~~~~~~~~~~~~~~~~~~~~~w~p~di~v~G~D~i~~h~~~~~~~~~~l~~~g~~~~~~~~~~~~~g~v~~~g~K 275 (314)
T cd00812 196 ARYTDAHNLEQPYEGDLEFDREEFEYWYPVDIYIGGKEHAPNHLLYSRFNHKALFDEGLVTDEPPKGLIVQGMVLLEGEK 275 (314)
T ss_pred HHHHhcccccCcchhhhhhhHHHHHHhCCCeeeecchhHHHHHHHHHHHHHHHHcCcccccccCcHHheecceEecCccc
Confidence 01268899999999996321 257889999999
Q ss_pred hhhcchhHHHHHHHHH
Q psy6851 250 KQQSLKLVVIMKEFFL 265 (948)
Q Consensus 250 MSKSLGN~vti~ef~l 265 (948)
||||+||+|++.+++.
T Consensus 276 mSkS~Gn~v~~~dll~ 291 (314)
T cd00812 276 MSKSKGNVVTPDEAIK 291 (314)
T ss_pred cCCcCCCCCCHHHHHH
Confidence 9999999999998864
No 45
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=99.26 E-value=3.7e-11 Score=140.60 Aligned_cols=233 Identities=14% Similarity=0.179 Sum_probs=159.0
Q ss_pred ChHHHHHHHHHHHHHHhc--CCCCCCcccccccc--HHHHHHHHHHHHHHcCCee-eeCCcEEEeeccCCCCCCCCcccc
Q psy6851 99 PPSEMFKMETDKYSQFDE--TVLPPTVLTRVSEY--IPEIVASYIEKIIANGLAY-ESNGSVYFNVNAFDSQPNHYYAKL 173 (948)
Q Consensus 99 ~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~--IpeII~~~I~~LI~~G~AY-es~GsVYFDv~~f~~~g~~~YgKL 173 (948)
.|+++.+.+.+.|.+++. ||.. +.+++.+++ .+.+. +++++|.++|++| +.+|+||||+..|.+
T Consensus 174 ~~~~~~~~~~~~~~~~l~~LgI~~-D~~~~es~~~~~~~~~-~~~~~L~~~G~~y~~~~Ga~~~~~~~~~~--------- 242 (507)
T PRK01611 174 LWRKAVDISLDEIKEDLDRLGVHF-DVWFSESELYYNGKVD-EVVEDLKEKGLLYVESDGALWVRLTEFGD--------- 242 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCee-eEEeecCcchhcchHH-HHHHHHHHCCCEEEeeCCcEEEEchhhCC---------
Confidence 566777777778887777 9865 777887865 46788 7999999999999 999999999988753
Q ss_pred CCccccccccccCCCCcCCCCCCCcccCCCCCCCCCCcceeEeec---cC-ccccccccccCCcccc-------------
Q psy6851 174 VPEAYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIFFYG---TR-ETGICRQDELFPYTEF------------- 236 (948)
Q Consensus 174 ~P~DFaLWK~ak~gEp~wespWg~~~~~m~~~~~GRPGWHIEcLG---~~-dih~GG~DL~FPHHEn------------- 236 (948)
+.|+.+||. +|. +-|.. -.++||++|+- .- ++.+.++++-|+++.-
T Consensus 243 -~~~~vl~ks--dG~----~~Y~t----------~Dia~~~~k~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~ 305 (507)
T PRK01611 243 -DKDRVLIKS--DGT----YTYFT----------RDIAYHLYKFERFDRVIYVVGADHHGHFKRLKAALKALGYDPDALE 305 (507)
T ss_pred -CCCeEEEEC--CCC----ccchH----------HHHHHHHHHHhhcCEEEEEECCChHHHHHHHHHHHHHcCCCcccce
Confidence 237999998 443 45554 35788888753 22 5677788888887651
Q ss_pred -ccc--cccEEE-cccchhhcchhHHHHHHHHHH-HHH--------------------------HHhh-cCCChhhhH--
Q psy6851 237 -KDK--YGKVRV-HLSQKQQSLKLVVIMKEFFLN-VKD--------------------------HIRN-LKFPATTVS-- 282 (948)
Q Consensus 237 -e~h--~G~l~i-~geKMSKSLGN~vti~ef~l~-ls~--------------------------hyR~-l~~s~~~l~-- 282 (948)
..| +|++.- +|.|||||.||++++.|++.. ... ...+ +.|+++.+.
T Consensus 306 ~~~h~~~glv~~~~g~KMSkR~Gn~i~l~dll~~a~g~~~~~~~~~~~a~~vgidAiR~~~L~~~~~~~~~Fd~~~~~~~ 385 (507)
T PRK01611 306 VLLHQMVGLVRGGEGVKMSTRAGNVVTLDDLLDEAVGRARELIEEKEIAEAVGIDAVRYFDLSRSRDKDLDFDLDLALSF 385 (507)
T ss_pred EEEEEEEEeeECCCCCcccCCCCceeEHHHHHHHHHHHHHHHHHhhhhhhhhccceeEehhhhcCCCCCCccCHHHHHhh
Confidence 122 233332 467999999999988877643 221 1222 556554321
Q ss_pred ----------HHHhhH--------------------HHhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhh
Q psy6851 283 ----------SFEKWT--------------------QADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIY 332 (948)
Q Consensus 283 ----------~~~r~~--------------------~ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~y 332 (948)
+..|.. ..+..|...+..+.+.+..|+ +++....+...|++|+...|.+
T Consensus 386 ~~~~~~yvqYa~aR~~sil~k~~~~~~~~~~~~l~~~~e~~Ll~~L~~~~~~v~~a~-~~~~p~~l~~yl~~la~~f~~f 464 (507)
T PRK01611 386 EGNNPPYVQYAHARICSILRKAAEAGIDLLLALLTEEEEKELIKKLAEFPEVVESAA-EELEPHRIANYLYELAGAFHSF 464 (507)
T ss_pred cCCCcHHHHHHHHHHHHHHHhhhccCccccccccCCHHHHHHHHHHHHHHHHHHHHH-HhCCcHHHHHHHHHHHHHHHHH
Confidence 111211 112334456677889999999 7899999999999999999886
Q ss_pred hcC-----CCC------HHHHHHHHHHHHHHHhHccccc
Q psy6851 333 LRG-----TPN------QLLLRDIGAYVTKILTVFGCIG 360 (948)
Q Consensus 333 Ld~-----~~~------~~lL~~i~~~V~~mL~VLGL~~ 360 (948)
-+. ... ..++..+...+..-|.+|||..
T Consensus 465 Y~~~~l~~~~~~~~~~Rl~L~~a~~~vl~~~l~lLgi~~ 503 (507)
T PRK01611 465 YNRVLLKDEEEELRNARLALVKATAQVLKNGLDLLGISA 503 (507)
T ss_pred HHHCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 541 111 1234455556777788999854
No 46
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.25 E-value=1.9e-12 Score=146.35 Aligned_cols=62 Identities=2% Similarity=-0.150 Sum_probs=50.0
Q ss_pred cccHHHHHHHHHHHHhhcCCCCC-Ceeecc--cccHHHHHHHHhCcccCCC-cccCCcccccCCCC
Q psy6851 625 ATLPKHWEAEFHKDMADLNVLPP-TVLTRV--SEYIPEIVASAQTPKPAAA-KKAESSSDDDSSSE 686 (948)
Q Consensus 625 ~~~~~~~~~~f~~dm~~L~v~~p-~~~~rv--se~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvsse 686 (948)
.+++++|.++|.++|++|||.-- +...++ .+|+..+..++.+|.++|+ |.....|||+..++
T Consensus 82 ~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~ 147 (382)
T cd00817 82 WEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLR 147 (382)
T ss_pred HHHHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEeeeeEEeecCCcC
Confidence 45788999999999999999741 122222 3477888888999999999 99999999999883
No 47
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.22 E-value=2.8e-12 Score=150.74 Aligned_cols=76 Identities=25% Similarity=0.269 Sum_probs=63.2
Q ss_pred cCCCC--CCcceeeccCCCCCcccCCCCCCCCchhHHHHHHHHhhcCCCceeecCCCCCCC---CCChhHHHHHhccC--
Q psy6851 787 EKRSP--NDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKF---PHHDNELAQAEGLP-- 859 (948)
Q Consensus 787 ~K~~~--~DfaLwk~~k~~ep~w~spwg~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~F---PHH~ne~aq~e~~~-- 859 (948)
...|| .||++|+..+...|. ||.|++||++ -.|+..+|.|..||++++ +|++|...|...+.
T Consensus 251 ~~~n~~~rD~v~~R~~~~~h~~----~Gd~~~i~Pt-------Y~fA~~VDD~l~GITHViRg~d~~~~t~~Q~~l~~~L 319 (567)
T PRK04156 251 EHPNPSVRDWVAFRIVKTPHPR----VGDKYRVWPT-------YNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYDYF 319 (567)
T ss_pred cCCCCCccccEEEEEcCCCccc----cCCCeEEEEE-------eccCceeeecCCCCCeEEcccccccChHHHHHHHHHc
Confidence 34555 899999986655554 9999999976 489999999999999999 99999999998653
Q ss_pred CCC-----------CCCccccchhh
Q psy6851 860 THD-----------QEGKELSKGLA 873 (948)
Q Consensus 860 ~~~-----------~~g~kmsKsl~ 873 (948)
|.. ++|.|||||..
T Consensus 320 g~~~P~~~H~~~L~~~g~kLSKR~~ 344 (567)
T PRK04156 320 GWEYPETIHYGRLKIEGFVLSTSKI 344 (567)
T ss_pred CCCCceEEEcceecCCCceeecccc
Confidence 322 78999999983
No 48
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=99.17 E-value=1.8e-11 Score=143.48 Aligned_cols=59 Identities=19% Similarity=0.097 Sum_probs=54.5
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCeeecccc--cHHHHHHHHhCcccCCC-cccCCcccccCCCC
Q psy6851 627 LPKHWEAEFHKDMADLNVLPPTVLTRVSE--YIPEIVASAQTPKPAAA-KKAESSSDDDSSSE 686 (948)
Q Consensus 627 ~~~~~~~~f~~dm~~L~v~~p~~~~rvse--~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvsse 686 (948)
+++.|.+.|.+++++|||. ++.++|+++ |++.|..++++|.++|+ |..++.|||++..+
T Consensus 66 ~~~~~~~~~~~~l~~LgI~-~D~~~~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~ 127 (530)
T TIGR00398 66 LVDKYHEEFKDDWKWLNIS-FDRFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECE 127 (530)
T ss_pred HHHHHHHHHHHHHHHhCCC-CCCCccCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCC
Confidence 5678999999999999997 688889888 99999999999999999 99999999999874
No 49
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.16 E-value=2.8e-11 Score=118.47 Aligned_cols=54 Identities=20% Similarity=0.179 Sum_probs=48.5
Q ss_pred hhHHHHHHHHhhcCCCceeecCCCCCCCCCChhHHHHHhccCCCC-----------C-CCccccchh
Q psy6851 818 WHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLPTHD-----------Q-EGKELSKGL 872 (948)
Q Consensus 818 WHieCs~m~~~~lg~~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~-----------~-~g~kmsKsl 872 (948)
||++|++|+..+++..+|||.||.|+.+ ||++..++++++.+.. . +|.|||||+
T Consensus 78 y~~~~~a~~~~~~~~~~~i~~~G~Dq~~-h~~~~~~i~~~~~~~~~p~~~~~~~l~~~~g~KmSks~ 143 (143)
T cd00802 78 YMFLQAADFLLLYETECDIHLGGSDQLG-HIELGLELLKKAGGPARPFGLTFGRVMGADGTKMSKSK 143 (143)
T ss_pred HHHHHHHHHHHHhhCCcEEEEechhHHH-HHHHHHHHHHHhCCCCCceEEEeCCeECCCCCcCCCCC
Confidence 9999999999999999999999999999 9999999999975432 2 569999995
No 50
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=99.14 E-value=3.5e-11 Score=141.81 Aligned_cols=59 Identities=14% Similarity=0.080 Sum_probs=55.3
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCeeeccc--ccHHHHHHHHhCcccCCC-cccCCcccccCCCC
Q psy6851 627 LPKHWEAEFHKDMADLNVLPPTVLTRVS--EYIPEIVASAQTPKPAAA-KKAESSSDDDSSSE 686 (948)
Q Consensus 627 ~~~~~~~~f~~dm~~L~v~~p~~~~rvs--e~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvsse 686 (948)
++++|.+.|.++|++|||. ++.++|++ +|++.+++++++|.++|+ |..++.|||++.++
T Consensus 71 ~~~~~~~~~~~~~~~l~i~-~d~~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~ 132 (556)
T PRK12268 71 LADKYHEEHKEDFKKLGIS-YDLFTRTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAYCPSDG 132 (556)
T ss_pred HHHHHHHHHHHHHHHcCCc-CCCCcCCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEecCCCC
Confidence 5789999999999999995 79999999 899999999999999999 99999999999874
No 51
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=99.07 E-value=3e-10 Score=141.62 Aligned_cols=114 Identities=18% Similarity=0.207 Sum_probs=87.3
Q ss_pred ccccccccccCCccccc-----------------cccccEEEcccchhhcchhHHHHHHH-----------HHHHHHHHh
Q psy6851 221 ETGICRQDELFPYTEFK-----------------DKYGKVRVHLSQKQQSLKLVVIMKEF-----------FLNVKDHIR 272 (948)
Q Consensus 221 dih~GG~DL~FPHHEne-----------------~h~G~l~i~geKMSKSLGN~vti~ef-----------~l~ls~hyR 272 (948)
|+|++|.|++|+||.++ .|+|||.++|+|||||+||++++.++ |++-.++|+
T Consensus 575 D~~~~GkDii~~H~~~~i~~~~a~~~~~~~Pk~i~~~G~vl~~G~KMSKSlGNvI~p~d~i~~yGaDalRl~Ll~~~~~~ 654 (938)
T TIGR00395 575 DWRISGKDLIPNHLTFYIFHHVAIFPEKFWPRGIVVNGYVMLEGKKMSKSKGNVLTLEQAVEKFGADVARLYIADAAETV 654 (938)
T ss_pred eEEEEeeccccchHHHHHHHHHHcCCccccCcEEEEeceEEeCCccccCcCCCCCCHHHHHHHcChHHHHHHHHhcCCCC
Confidence 79999999999999853 46899999999999999999987754 342334788
Q ss_pred h-cCCChhhhHH----HHhhHH-------------------HhHHHhHHHHHHHHHHHHHHhhcCChHHHH-HHHHHHHH
Q psy6851 273 N-LKFPATTVSS----FEKWTQ-------------------ADLELSTRFIQTKNNVHAALCDNMDTRSAL-DSIRDCIS 327 (948)
Q Consensus 273 ~-l~~s~~~l~~----~~r~~~-------------------ad~eL~~~l~el~e~F~aAL~DDFNTP~AL-aaLfeLVr 327 (948)
+ ++|+++.+.. +.++.. .+..+...+..+...+.++| ++|+++.|+ ..++++++
T Consensus 655 ~D~~fs~~~~~~~~~~l~~l~n~~~~~~~~~~~~~~~~~~~~D~wlls~l~~~i~~v~~a~-e~~~~~~Al~~~l~~~~~ 733 (938)
T TIGR00395 655 QDADWKESEVEGTILRLERLYEFAEEITKESNLETGEETSFIDRWLESRMNAAIKETYEAM-ENFQTRKAVKYALFDLQA 733 (938)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccCChHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHH
Confidence 8 9999876541 111111 11223345567789999999 699999999 88999999
Q ss_pred HHHhhhcC
Q psy6851 328 QVNIYLRG 335 (948)
Q Consensus 328 aiN~yLd~ 335 (948)
.+|-|+..
T Consensus 734 ~~n~Yl~~ 741 (938)
T TIGR00395 734 DVDWYRRR 741 (938)
T ss_pred HHHHHHHh
Confidence 99999874
No 52
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=2.5e-08 Score=117.84 Aligned_cols=237 Identities=17% Similarity=0.172 Sum_probs=147.1
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccc--cHHHHHHHHHHHHHHcCCeeeeCCcEEEeeccCC--
Q psy6851 90 EAKEAQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSE--YIPEIVASYIEKIIANGLAYESNGSVYFNVNAFD-- 163 (948)
Q Consensus 90 ~~~a~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe--~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~f~-- 163 (948)
+.+|.+.|++++++.+++.+.|.++.+ ||. =|.+.|-|+ |..-.- ++.++|.+||+-|...-.++|+++.=.
T Consensus 59 ~~~A~~~g~tP~el~d~~~~~~~~~~~~l~Is-fD~F~rTt~~~h~~~vq-~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl 136 (558)
T COG0143 59 ELKAEKEGITPQELVDKNHEEFKELFKALNIS-FDNFIRTTSPEHKELVQ-EFFLKLYENGDIYLREYEGLYCVSCERFL 136 (558)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCc-ccccccCCCHHHHHHHH-HHHHHHHHCCCEeccceeeeEcccccccc
Confidence 445567789999999888888887776 663 355655553 555454 789999999999998778899876422
Q ss_pred -CC---CCCCcc---------------ccCCccc---------------------------cc----ccccc--------
Q psy6851 164 -SQ---PNHYYA---------------KLVPEAY---------------------------GD----TKTLQ-------- 185 (948)
Q Consensus 164 -~~---g~~~Yg---------------KL~P~DF---------------------------aL----WK~ak-------- 185 (948)
+. |.-.|. .++|.+. .. |=...
T Consensus 137 ~dr~v~g~cp~cg~~~arGD~Ce~Cg~~~~P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~~~~~~~~~p~~ 216 (558)
T COG0143 137 PDRYVEGTCPKCGGEDARGDQCENCGRTLDPTELINPVCVISGATPEVREEEHYFFRLSKFQDKLLEWYESNPDFIWPAN 216 (558)
T ss_pred cchheeccCCCcCccccCcchhhhccCcCCchhcCCCeeEeeCCCcccccceeEEEEHHHhHHHHHHHHHhCccccCChH
Confidence 11 000111 1333221 00 10000
Q ss_pred ----------CCCC-----cCCCCCCCcccCCCCCCCCCCcceeEe-----------e------ccC---------c---
Q psy6851 186 ----------EGEV-----RGYPPWPARIEGLADETPNRLKYHIFF-----------Y------GTR---------E--- 221 (948)
Q Consensus 186 ----------~gEp-----~wespWg~~~~~m~~~~~GRPGWHIEc-----------L------G~~---------d--- 221 (948)
.|=- +-...||-|++ |-||=-|-. + |.. +
T Consensus 217 ~~ne~~~~i~~GL~d~~IsR~~~~WGipvP-------~~p~kv~YVWfDAligYisa~~~~~~~~~~~~~~~~W~~~~~e 289 (558)
T COG0143 217 RRNEVLNFLKEGLKDLSITRTDLDWGIPVP-------GDPGKVIYVWFDALIGYISALGELAEIGDDEDFKKFWPADDTE 289 (558)
T ss_pred HHHHHHHHHHccCcccceecCCCCCCccCC-------CCCCCEEEEeeccHHHHHHHhcchhccCChHHHHhhCCCCCce
Confidence 1100 12456887775 334422210 1 110 1
Q ss_pred -cccccccccCCccccc---------------cccccEEEcccchhhcchhHHHHHHHHHHH-HHHHh----------h-
Q psy6851 222 -TGICRQDELFPYTEFK---------------DKYGKVRVHLSQKQQSLKLVVIMKEFFLNV-KDHIR----------N- 273 (948)
Q Consensus 222 -ih~GG~DL~FPHHEne---------------~h~G~l~i~geKMSKSLGN~vti~ef~l~l-s~hyR----------~- 273 (948)
+|.-|-|-+..|-=.. ..+|+|+++|+|||||+||+|...+++..+ .+.+| +
T Consensus 290 ~vhfIGKDii~FHav~wPamL~~~~~~lP~~i~ahg~l~~~G~KmSKSrG~~V~~~~~~~~~~~D~lRYyL~~~~p~~~D 369 (558)
T COG0143 290 LVHFIGKDIIRFHAVYWPAMLMAAGLPLPTRIFAHGFLTLEGQKMSKSRGNVVDPDELLEQYGVDALRYYLARELPEGSD 369 (558)
T ss_pred EEEEeccccCcchhhHHHHHHHhCCCCCCCEEEeeeeEEECCccccccCCcEEeHHHHHHHcCchHhHHHHHHhCCCCCC
Confidence 6888899987775432 347899999999999999999877653210 11111 1
Q ss_pred cCCChhhhH---------H----HHhhH-------------------HHhHHHhHHHHHHHHHHHHHHhhcCChHHHHHH
Q psy6851 274 LKFPATTVS---------S----FEKWT-------------------QADLELSTRFIQTKNNVHAALCDNMDTRSALDS 321 (948)
Q Consensus 274 l~~s~~~l~---------~----~~r~~-------------------~ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaa 321 (948)
.+||.+.+. . +.|.- ..+.++...+.++...+.++| +.+.+.+|+..
T Consensus 370 ~dFs~~~f~~rvN~dL~n~lgNl~~R~~~fi~k~~~g~vp~~~~~~~~~d~~~~~~~~~~~~~~~~~~-e~~~~~~Al~~ 448 (558)
T COG0143 370 GDFSWEDFVERVNADLANKLGNLANRTLGFINKYFDGVVPAAGAPDLEEDEELLALAREALEAVAEAM-EKYEFRKALEE 448 (558)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccccccchhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHH
Confidence 566654321 0 01100 123445566677889999999 89999999999
Q ss_pred HHHHHHHHHhhhcCC
Q psy6851 322 IRDCISQVNIYLRGT 336 (948)
Q Consensus 322 LfeLVraiN~yLd~~ 336 (948)
|++|++.+|+|+++.
T Consensus 449 i~~l~~~~N~Yi~~~ 463 (558)
T COG0143 449 IMALASRANKYIDEQ 463 (558)
T ss_pred HHHHHHHHHHHhhcC
Confidence 999999999999875
No 53
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=98.93 E-value=6.8e-10 Score=134.12 Aligned_cols=59 Identities=14% Similarity=0.014 Sum_probs=54.6
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCeeeccc--ccHHHHHHHHhCcccCCC-cccCCcccccCCCC
Q psy6851 627 LPKHWEAEFHKDMADLNVLPPTVLTRVS--EYIPEIVASAQTPKPAAA-KKAESSSDDDSSSE 686 (948)
Q Consensus 627 ~~~~~~~~f~~dm~~L~v~~p~~~~rvs--e~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvsse 686 (948)
++++|.+.|.++|++|||. ++.++|++ +|+..|+.++++|.++|+ |...+.|||+++++
T Consensus 69 ~~~~~~~~~~~~~~~l~i~-~d~f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~ 130 (673)
T PRK00133 69 LIARYHAEHKRDFAGFGIS-FDNYGSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKG 130 (673)
T ss_pred HHHHHHHHHHHHHHHhCCC-CCCCccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCC
Confidence 5679999999999999998 57888998 599999999999999999 99999999999885
No 54
>PLN02610 probable methionyl-tRNA synthetase
Probab=98.87 E-value=5.6e-08 Score=119.58 Aligned_cols=72 Identities=14% Similarity=0.130 Sum_probs=55.2
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhc--CCCCCCcccccc--ccHHHHHHHHHHHHHHcCCeeeeCCcEEEeec
Q psy6851 87 AAQEAKEAQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVS--EYIPEIVASYIEKIIANGLAYESNGSVYFNVN 160 (948)
Q Consensus 87 ~~~~~~a~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvT--e~IpeII~~~I~~LI~~G~AYes~GsVYFDv~ 160 (948)
..-+.+|.+.|+++++++.++.+.|.+++. ||. .+.+.|-| +|..-+- .+..+|.++|+-|...-.++|++.
T Consensus 69 ~~i~~~A~~~g~~p~e~~d~~~~~~~~~~~~l~i~-~D~f~rT~~~~h~~~vq-~~f~~L~~~G~Iy~~~~~~~yc~~ 144 (801)
T PLN02610 69 TATETKALEENCTPKEICDKYHAIHKEVYDWFDIS-FDKFGRTSTPQQTEICQ-AIFKKLMENNWLSENTMQQLYCDT 144 (801)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCc-cccCccCCCHHHHHHHH-HHHHHHHHCCCEEEeeEEEeecCC
Confidence 334455667799999999999988887776 764 46665544 4666666 799999999999998888999865
No 55
>PF09190 DALR_2: DALR domain; InterPro: IPR015273 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This DALR domain is found in cysteinyl-tRNA-synthetases []. ; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1LI5_B 1LI7_B 1U0B_B 3TQO_A.
Probab=98.85 E-value=4.3e-09 Score=90.53 Aligned_cols=57 Identities=23% Similarity=0.381 Sum_probs=45.1
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhHcccccc
Q psy6851 304 NVHAALCDNMDTRSALDSIRDCISQVNIYLRGTPNQLLLRDIGAYVTKILTVFGCIGD 361 (948)
Q Consensus 304 ~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~~~~~~lL~~i~~~V~~mL~VLGL~~~ 361 (948)
+|.+||+||||||.||++||++++.+|+..... +...+..+...++.+..||||...
T Consensus 1 ~F~~AmdDDfNT~~Ala~lf~l~~~~N~~~~~~-~~~~~~~~~~~l~~~~~vLGl~~~ 57 (63)
T PF09190_consen 1 EFIEAMDDDFNTPEALAALFELVKEINRALESN-DKEDLEALAAALRKLLDVLGLLQE 57 (63)
T ss_dssp HHHHHHCBTS-HHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHCCT-S-S
T ss_pred ChHHHHhHhcCcHHHHHHHHHHHHHHHHhcccC-CHHHHHHHHHHHHHHHhcCcCCCC
Confidence 589999999999999999999999999944433 445566778899999999999643
No 56
>smart00840 DALR_2 This DALR domain is found in cysteinyl-tRNA-synthetases.
Probab=98.79 E-value=1e-08 Score=85.27 Aligned_cols=55 Identities=20% Similarity=0.245 Sum_probs=47.0
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhHccc
Q psy6851 304 NVHAALCDNMDTRSALDSIRDCISQVNIYLRGTPNQLLLRDIGAYVTKILTVFGC 358 (948)
Q Consensus 304 ~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~~~~~~lL~~i~~~V~~mL~VLGL 358 (948)
+|++||+||||||.|+++|+++++.+|+++........+..+..+++.|+++||+
T Consensus 1 ~f~~al~DD~NT~~Al~~l~~l~~~~N~~l~~~~~~~~~~~~~~~~~~~~~ilGl 55 (56)
T smart00840 1 RFEEAMDDDFNTPEALAVLFELAREINRLLLKAVDAEELAALAALLRALGGVLGL 55 (56)
T ss_pred ChHHHhhcccCcHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHhccCC
Confidence 3899999999999999999999999999986443334466788889999999997
No 57
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=98.77 E-value=6.2e-09 Score=125.36 Aligned_cols=59 Identities=14% Similarity=0.005 Sum_probs=53.6
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCeeecccc--cHHHHHHHHhCcccCCC-cccCCcccccCCCC
Q psy6851 627 LPKHWEAEFHKDMADLNVLPPTVLTRVSE--YIPEIVASAQTPKPAAA-KKAESSSDDDSSSE 686 (948)
Q Consensus 627 ~~~~~~~~f~~dm~~L~v~~p~~~~rvse--~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvsse 686 (948)
++++|.+.|.++|++|||. +|.+.|+|+ |+..+..++++|.++|+ |.....++|+.+.+
T Consensus 71 ~~d~~~~~fk~~l~~lgI~-~D~f~rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~ 132 (648)
T PRK12267 71 YVDEISAGFKELWKKLDIS-YDKFIRTTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCE 132 (648)
T ss_pred HHHHHHHHHHHHHHHcCCC-CCCCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCC
Confidence 4678999999999999995 699999998 99999999999999999 99888889998874
No 58
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=98.75 E-value=2.1e-08 Score=124.90 Aligned_cols=115 Identities=17% Similarity=0.221 Sum_probs=85.4
Q ss_pred ccccccccccCCccccc-----------------cccccEEEcccchhhcchhHHHHHHH-----------HHHHHHHHh
Q psy6851 221 ETGICRQDELFPYTEFK-----------------DKYGKVRVHLSQKQQSLKLVVIMKEF-----------FLNVKDHIR 272 (948)
Q Consensus 221 dih~GG~DL~FPHHEne-----------------~h~G~l~i~geKMSKSLGN~vti~ef-----------~l~ls~hyR 272 (948)
|+|++|.|++++|+-+. .++|||..+|+|||||+||+++..++ |+...+.+.
T Consensus 532 D~~~~GkDii~~Hl~~~~~~~~a~~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNvVdp~eii~~yGaDalRl~L~~~~~~~ 611 (897)
T PRK12300 532 DWRHSGKDLIPNHLTFFIFNHVAIFPEEKWPRGIVVNGFVLLEGKKMSKSKGNVIPLRKAIEEYGADVVRLYLTSSAELL 611 (897)
T ss_pred eEEEeeeccCccHHHHHHHHHHHhcCCCccCcEEEEcceEEECCccccCcCCCCCCHHHHHHHcChHHHHHHHHhCCCCC
Confidence 78899999999986642 45799999999999999999987654 342234566
Q ss_pred h-cCCChhhhHH----HHhhHH----------------HhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHH-HHHHHHH
Q psy6851 273 N-LKFPATTVSS----FEKWTQ----------------ADLELSTRFIQTKNNVHAALCDNMDTRSALDSIR-DCISQVN 330 (948)
Q Consensus 273 ~-l~~s~~~l~~----~~r~~~----------------ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLf-eLVraiN 330 (948)
+ ++|+++.+.. +.|+.. .+.-+...+..+...+..+| ++|++..|+.+++ .+++.+|
T Consensus 612 ~D~~fs~~~v~~~~~~l~r~~~~~~~~~~~~~~~~~~~~D~wils~l~~~i~~v~~~~-e~~~~~~A~~~i~~~l~~~~n 690 (897)
T PRK12300 612 QDADWREKEVESVRRQLERFYELAKELIEIGGEEELRFIDKWLLSRLNRIIKETTEAM-ESFQTRDAVQEAFYELLNDLR 690 (897)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHHHHhcCCCccccCHhHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHH
Confidence 6 8888876542 222221 12234455677889999999 7999999998775 7889999
Q ss_pred hhhcCC
Q psy6851 331 IYLRGT 336 (948)
Q Consensus 331 ~yLd~~ 336 (948)
.|++..
T Consensus 691 ~Yi~~~ 696 (897)
T PRK12300 691 WYLRRV 696 (897)
T ss_pred HHHHhc
Confidence 999754
No 59
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=98.73 E-value=5.6e-09 Score=116.64 Aligned_cols=60 Identities=17% Similarity=0.110 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHHHHhc--CCCCC---CccccccccHHHHHHHHHHHHHHcCCeeeeCCcEEEeec
Q psy6851 100 PSEMFKMETDKYSQFDE--TVLPP---TVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVN 160 (948)
Q Consensus 100 ~~el~~~~~~~f~~dm~--nV~~P---~~~pRvTe~IpeII~~~I~~LI~~G~AYes~GsVYFDv~ 160 (948)
..++++++++.|.+++. ||..+ .+.|+.++|++.+. +++.+|+++|++|..++.|||-+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~-~~f~~L~~~G~iY~~~~~v~~~v~ 146 (338)
T cd00818 82 CREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVW-WVFKQLHEKGLLYRGYKVVPWPLI 146 (338)
T ss_pred HHHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHH-HHHHHHHHCCCEeccCCeeeeEEE
Confidence 44555666666666665 99887 67788889999999 799999999999999999999543
No 60
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=98.58 E-value=2.2e-07 Score=110.15 Aligned_cols=129 Identities=12% Similarity=0.122 Sum_probs=90.5
Q ss_pred HHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeee--CCcEEEeeccCCCCC--C-CC----------
Q psy6851 107 ETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYES--NGSVYFNVNAFDSQP--N-HY---------- 169 (948)
Q Consensus 107 ~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes--~GsVYFDv~~f~~~g--~-~~---------- 169 (948)
+.+++.++++ |+ .|+..++.|+|++.+. +++++||++|+||.- ++.. | +.+..++ + ++
T Consensus 154 ~~~~I~edL~wLGl-~wD~~~~qSdr~~~y~-~~a~~Li~~G~AY~C~cs~ee-~--~~~r~~g~~~~~R~~~~ee~l~~ 228 (567)
T PRK04156 154 AYDMILEDLKWLGV-KWDEVVIQSDRLEIYY-EYARKLIEMGGAYVCTCDPEE-F--KELRDAGKPCPHRDKSPEENLEL 228 (567)
T ss_pred HHHHHHHHHHHcCC-CCCCccCcccCHHHHH-HHHHHHHHcCCCccCCCCHHH-H--HHHHhcCCCCCCcCCCHHHHHHH
Confidence 4567777777 98 6789999999999999 799999999999972 2222 1 1221111 0 00
Q ss_pred ---------------------ccccCC--ccccccccccCCCCcCCCCCCCcccCCCCCCCCCCcceeEeeccC-ccccc
Q psy6851 170 ---------------------YAKLVP--EAYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIFFYGTR-ETGIC 225 (948)
Q Consensus 170 ---------------------YgKL~P--~DFaLWK~ak~gEp~wespWg~~~~~m~~~~~GRPGWHIEcLG~~-dih~G 225 (948)
....+| +||++|+...... +-|| .++++|++-.|+.. |.|..
T Consensus 229 ~e~m~~G~~~~g~~vlR~k~d~~~~n~~~rD~v~~R~~~~~h----~~~G----------d~~~i~PtY~fA~~VDD~l~ 294 (567)
T PRK04156 229 WEKMLDGEYKEGEAVVRVKTDLEHPNPSVRDWVAFRIVKTPH----PRVG----------DKYRVWPTYNFAVAVDDHLL 294 (567)
T ss_pred HHHhhcCccccCCeEEEEECcccCCCCCccccEEEEEcCCCc----cccC----------CCeEEEEEeccCceeeecCC
Confidence 001112 4555555432222 2355 48899999778877 89999
Q ss_pred cccccC---Cccccc-----------------cccccEEEcccchhhcc
Q psy6851 226 RQDELF---PYTEFK-----------------DKYGKVRVHLSQKQQSL 254 (948)
Q Consensus 226 G~DL~F---PHHEne-----------------~h~G~l~i~geKMSKSL 254 (948)
|+++++ +|++|. .|+|.|+++|.|||||.
T Consensus 295 GITHViRg~d~~~~t~~Q~~l~~~Lg~~~P~~~H~~~L~~~g~kLSKR~ 343 (567)
T PRK04156 295 GVTHVLRGKDHIDNTEKQRYIYDYFGWEYPETIHYGRLKIEGFVLSTSK 343 (567)
T ss_pred CCCeEEcccccccChHHHHHHHHHcCCCCceEEEcceecCCCceeeccc
Confidence 999999 999974 57888999999999998
No 61
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=98.50 E-value=9.2e-08 Score=108.66 Aligned_cols=45 Identities=18% Similarity=0.047 Sum_probs=37.8
Q ss_pred ccccccccccCCccccc----------------cccccEE-EcccchhhcchhHHHHHHHHH
Q psy6851 221 ETGICRQDELFPYTEFK----------------DKYGKVR-VHLSQKQQSLKLVVIMKEFFL 265 (948)
Q Consensus 221 dih~GG~DL~FPHHEne----------------~h~G~l~-i~geKMSKSLGN~vti~ef~l 265 (948)
|+|++|.|++++||.+. ..+|+|. ++|+|||||+||+|++.+++.
T Consensus 298 d~~~~G~D~~~~h~~~~l~~~~~~~g~~p~~~v~~hg~v~~~~g~KMSKS~Gn~v~~~dll~ 359 (382)
T cd00817 298 SLLVTGHDIIFFWVARMIMRGLKLTGKLPFKEVYLHGLVRDEDGRKMSKSLGNVIDPLDVID 359 (382)
T ss_pred CeeeeecCcCchHHHHHHHHHHHhhCCCchHHeEeeeeEECCCCCCccccCCCCCCHHHHHH
Confidence 79999999999999874 1245666 689999999999999988764
No 62
>KOG0436|consensus
Probab=98.45 E-value=7e-06 Score=92.91 Aligned_cols=258 Identities=16% Similarity=0.163 Sum_probs=147.1
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccc--cHHHHHHHHHHHHHHcCCeeeeCCcEEEeec-------
Q psy6851 92 KEAQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSE--YIPEIVASYIEKIIANGLAYESNGSVYFNVN------- 160 (948)
Q Consensus 92 ~a~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe--~IpeII~~~I~~LI~~G~AYes~GsVYFDv~------- 160 (948)
+|+-.|.++.++..+....|.++.. || .=|...|-|+ |+..+. +|-..+..||+-|-.+-.=+|-|+
T Consensus 95 aaatnG~~P~e~cDr~s~~f~qL~k~~gi-~yt~FIRTTdpkH~a~Vq-efw~~~~knG~iy~g~~eGwYcvsdEtf~pE 172 (578)
T KOG0436|consen 95 AAATNGRNPPELCDRISQSFRQLWKDAGI-AYTKFIRTTDPKHEAIVQ-EFWARVFKNGDIYRGDYEGWYCVSDETFYPE 172 (578)
T ss_pred hHhhcCCChHHHHhhhhHHHHHHHHHhCc-chhheeecCCchHHHHHH-HHHHHHHhCCceeeecccceEeccccccCCH
Confidence 3456799999999999999987765 65 3366667665 777777 799999999999964321233332
Q ss_pred -cCCCCCCCCcccc--------------CCcccccccc---------------------------ccCCCC-------cC
Q psy6851 161 -AFDSQPNHYYAKL--------------VPEAYGDTKT---------------------------LQEGEV-------RG 191 (948)
Q Consensus 161 -~f~~~g~~~YgKL--------------~P~DFaLWK~---------------------------ak~gEp-------~w 191 (948)
+.-.... .-||. ...=|.|=|- .+.|=| +-
T Consensus 173 skv~k~p~-~~gk~vsmEsg~~vv~~kE~NY~FrLSkfqk~l~d~lrkNP~fvqPs~~~~qVl~~lktglpDlSISRpsa 251 (578)
T KOG0436|consen 173 SKVLKNPC-PPGKVVSMESGNPVVWRKEDNYFFRLSKFQKPLEDHLRKNPRFVQPSYFHNQVLSWLKTGLPDLSISRPSA 251 (578)
T ss_pred HHHhcCCC-CCCceeeeccCCceeEecccceeeeHHhhhhHHHHHHhcCCCccCchHHHHHHHHHHHcCCCcccccChhh
Confidence 1111000 01111 1111221111 111111 12
Q ss_pred CCCCCCcccCCCCCCCCCCcceeEe--------------------------eccC-ccccccccccCCccccc-------
Q psy6851 192 YPPWPARIEGLADETPNRLKYHIFF--------------------------YGTR-ETGICRQDELFPYTEFK------- 237 (948)
Q Consensus 192 espWg~~~~~m~~~~~GRPGWHIEc--------------------------LG~~-dih~GG~DL~FPHHEne------- 237 (948)
.-.||.|.++ -+.--|-. +|=. .+|+-|-|.+-=|.=+.
T Consensus 252 rl~WGIPvP~-------ddsQtIYVWfDAL~nYiSvig~~~~~~N~k~~ls~~wPat~HvIGKDIlrFHavYWPafLmaA 324 (578)
T KOG0436|consen 252 RLDWGIPVPG-------DDSQTIYVWFDALLNYISVIGYPNKQQNLKTALSFGWPATLHVIGKDILRFHAVYWPAFLMAA 324 (578)
T ss_pred hcccCCCCCC-------CCcceEEEeHHHHhhHHHhhcCCchhccccceeecCCCceeeehhhhhhhhhhhhhHHHHHhc
Confidence 2357776543 23333321 1211 46777888765565543
Q ss_pred --------cccccEEEcccchhhcchhHHH----HHHH-------HHHHHHHHhh-cCCChhhhH-------------HH
Q psy6851 238 --------DKYGKVRVHLSQKQQSLKLVVI----MKEF-------FLNVKDHIRN-LKFPATTVS-------------SF 284 (948)
Q Consensus 238 --------~h~G~l~i~geKMSKSLGN~vt----i~ef-------~l~ls~hyR~-l~~s~~~l~-------------~~ 284 (948)
.-+||++++|.||||||||++- ++.| |++=...+-+ -+|+++.+. -+
T Consensus 325 GlplP~~I~vHghwt~ngmKMsKSLGNvvdP~~l~~kygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La~~lG~Ll 404 (578)
T KOG0436|consen 325 GLPLPKMIFVHGHWTKNGMKMSKSLGNVVDPFELVQKYGVDAVRYFLLREGELGNDGDYSEEKLIKIVNAHLANTLGNLL 404 (578)
T ss_pred CCCCccEEEEeeeeeecceecchhhccccCHHHHHHHhCccceeeEeeeccccCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 1257899999999999999863 2211 1100000000 123322110 01
Q ss_pred HhhH---------------------HHhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcCC-------
Q psy6851 285 EKWT---------------------QADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGT------- 336 (948)
Q Consensus 285 ~r~~---------------------~ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~~------- 336 (948)
.|.. .....+...+.++++.+.+.. |+|..+.|+.++++.++++|.++...
T Consensus 405 nRc~gkkln~sn~e~~l~~~s~~v~ae~~~lv~~v~kl~ev~a~~~-d~f~~~~ale~V~si~n~~ntlvq~~aPWkl~~ 483 (578)
T KOG0436|consen 405 NRCLGKKLNISNCESTLVVDSPTVAAEGEPLVDTVEKLPEVAATNY-DNFSLYSALEAVLSIGNAGNTLVQQRAPWKLFK 483 (578)
T ss_pred HHHhhcccChhccccccccCCcchhhccchHHHHHHHhHHHHHhhc-ccccHHHHHHHHHHHHHhhhhhhhhcCCceecc
Confidence 1111 112345566778888888888 89999999999999999999998642
Q ss_pred ---CCHHHHHHHHHHHHHHHhHccccc
Q psy6851 337 ---PNQLLLRDIGAYVTKILTVFGCIG 360 (948)
Q Consensus 337 ---~~~~lL~~i~~~V~~mL~VLGL~~ 360 (948)
.+..-+..++..+...|.|+|+..
T Consensus 484 dsq~~~~~la~~~~~~le~lrv~~ill 510 (578)
T KOG0436|consen 484 DSQVSAEELAKVLHIILEVLRVIGILL 510 (578)
T ss_pred ccCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 233445555666677788888853
No 63
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=98.38 E-value=9.3e-07 Score=109.17 Aligned_cols=112 Identities=18% Similarity=0.144 Sum_probs=82.4
Q ss_pred ccccccccccCCccc----------------cccccccEE-EcccchhhcchhHHHHHHH-----------HHHHHHHHh
Q psy6851 221 ETGICRQDELFPYTE----------------FKDKYGKVR-VHLSQKQQSLKLVVIMKEF-----------FLNVKDHIR 272 (948)
Q Consensus 221 dih~GG~DL~FPHHE----------------ne~h~G~l~-i~geKMSKSLGN~vti~ef-----------~l~ls~hyR 272 (948)
|.+++|.|.+|.|-- +-..+|++. .+|+|||||+||+|++.++ |+ ++++|+
T Consensus 488 d~~~~G~Di~~~w~~~~l~~~~~~~~~~Pf~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~~yg~D~lR~~l-~~~~~~ 566 (800)
T PRK13208 488 DLRPQGHDIIRTWLFYTILRAYLLTGKLPWKNIMISGMVLDPDGKKMSKSKGNVVTPEELLEKYGADAVRYWA-ASARLG 566 (800)
T ss_pred eEEEeecchhhhHHHHHHHHHHHhcCCCCcceEEEeeEEECCCCCCCCCCCCCCCCHHHHHHHcCccHHHHHH-hcCCCC
Confidence 567789999886632 114567776 5999999999999987764 45 488888
Q ss_pred h-cCCChhhhHH----HHhhHH----------------------HhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Q psy6851 273 N-LKFPATTVSS----FEKWTQ----------------------ADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDC 325 (948)
Q Consensus 273 ~-l~~s~~~l~~----~~r~~~----------------------ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeL 325 (948)
+ ++|+.+.+.. +.++.. .+..+...+..+.+++.++| ++|+++.|+++|+++
T Consensus 567 ~d~~fs~~~~~~~~~~l~kl~N~~r~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~-e~~~f~~A~~~i~~f 645 (800)
T PRK13208 567 SDTPFDEKQVKIGRRLLTKLWNASRFVLHFSADPEPDKAEVLEPLDRWILAKLAKVVEKATEAL-ENYDFAKALEEIESF 645 (800)
T ss_pred CCceecHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHH
Confidence 8 8998876541 111111 12234455677889999999 699999999999999
Q ss_pred HHH--HHhhhc
Q psy6851 326 ISQ--VNIYLR 334 (948)
Q Consensus 326 Vra--iN~yLd 334 (948)
+.. +|.|++
T Consensus 646 ~~~~~~n~Yie 656 (800)
T PRK13208 646 FWHVFCDDYLE 656 (800)
T ss_pred HHHHhhHHHHH
Confidence 975 899986
No 64
>PLN02843 isoleucyl-tRNA synthetase
Probab=98.29 E-value=1.9e-06 Score=108.52 Aligned_cols=115 Identities=13% Similarity=0.048 Sum_probs=81.4
Q ss_pred CccccccccccCCccccc----------------cccccEEE-cccchhhcchhHHHHHHH-------------------
Q psy6851 220 RETGICRQDELFPYTEFK----------------DKYGKVRV-HLSQKQQSLKLVVIMKEF------------------- 263 (948)
Q Consensus 220 ~dih~GG~DL~FPHHEne----------------~h~G~l~i-~geKMSKSLGN~vti~ef------------------- 263 (948)
.|+|..|.|.+|.|+.+. ..+|++.. +|+||||||||+|+..++
T Consensus 565 aDl~~eG~Di~rgWf~s~l~~~~~~~g~~Pfk~v~~HG~vld~~G~KMSKSlGNvI~p~~vi~~~~~~~~~~~yGaD~lR 644 (974)
T PLN02843 565 ADLYLEGSDQHRGWFQSSLLTSVATKGKAPYKSVLTHGFVLDEKGFKMSKSLGNVVDPRLVIEGGKNQKQEPAYGADVLR 644 (974)
T ss_pred ceeeeeeccccchHHHHHHHHHHHhcCCCccceEEEeccEECCCCCCcCCCCCCcCCHHHHHhhccccccccccChHHHH
Confidence 378999999999887642 12355544 799999999999864432
Q ss_pred HHHHHHHHhh-cCCChhhhH----HHHhhHH-------------------------HhHHHhHHHHHHHHHHHHHHhhcC
Q psy6851 264 FLNVKDHIRN-LKFPATTVS----SFEKWTQ-------------------------ADLELSTRFIQTKNNVHAALCDNM 313 (948)
Q Consensus 264 ~l~ls~hyR~-l~~s~~~l~----~~~r~~~-------------------------ad~eL~~~l~el~e~F~aAL~DDF 313 (948)
|.+++.+|++ ++|+.+.+. .++++.. .|.-+...+.++...+.++| ++|
T Consensus 645 ~~l~~~~~~~d~~~s~~~l~~~~~~~~kl~n~~rf~lgnl~~~~~~~~~~~~~~~~~D~wiLskL~~li~~v~~ay-e~y 723 (974)
T PLN02843 645 LWVASVDYTGDVLIGPQILKQMSDIYRKLRGTLRYLLGNLHDWKPDNAVPYEDLPSIDKYALFQLENVVNEIEESY-DNY 723 (974)
T ss_pred HHHHhcccCCCceeCHHHHHHHHHHHHHHHHHHHHHHhCccCCCcccccCccccCHHHHHHHHHHHHHHHHHHHHH-Hcc
Confidence 2226788888 888876543 1222111 12223455677899999999 889
Q ss_pred ChHHHHHHHHHH--HHHHHhhhcC
Q psy6851 314 DTRSALDSIRDC--ISQVNIYLRG 335 (948)
Q Consensus 314 NTP~ALaaLfeL--VraiN~yLd~ 335 (948)
++..|+..|+++ ...+|.|++.
T Consensus 724 ~f~~A~~~i~~f~~~dlsn~Yie~ 747 (974)
T PLN02843 724 QFFKIFQILQRFTIVDLSNFYLDV 747 (974)
T ss_pred CHHHHHHHHHHHHHHHHhHHHHHh
Confidence 999999999887 5689999874
No 65
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=98.20 E-value=2.3e-06 Score=107.11 Aligned_cols=114 Identities=11% Similarity=0.111 Sum_probs=80.2
Q ss_pred CccccccccccCCcccc----------------ccccccEEE-cccchhhcchhHHHHHHH-----------HHHHHHHH
Q psy6851 220 RETGICRQDELFPYTEF----------------KDKYGKVRV-HLSQKQQSLKLVVIMKEF-----------FLNVKDHI 271 (948)
Q Consensus 220 ~dih~GG~DL~FPHHEn----------------e~h~G~l~i-~geKMSKSLGN~vti~ef-----------~l~ls~hy 271 (948)
.|++++|.|.++-|.-. -..+|++.. +|+|||||+||+|...++ |+ ++..|
T Consensus 546 ~Dl~~~G~Di~r~Wf~~~l~~~~~~~g~~P~k~vl~HG~vld~~G~KMSKSlGNvIdP~~ii~~yGaDalR~~l-l~~~~ 624 (912)
T PRK05743 546 ADLYLEGSDQHRGWFQSSLLTSVATRGKAPYKQVLTHGFTVDGKGRKMSKSLGNVIDPQDVIKKYGADILRLWV-ASTDY 624 (912)
T ss_pred ceEEEecccccchHHHHHHHHHHHhcCCCccceeEEeeeEECCCCCCCCCCCCCcCCHHHHHHhcChHHHHHHH-HhcCC
Confidence 37888999998744221 134688775 899999999999876543 44 45667
Q ss_pred hh-cCCChhhhHH----HHhhHH--------------------------HhHHHhHHHHHHHHHHHHHHhhcCChHHHHH
Q psy6851 272 RN-LKFPATTVSS----FEKWTQ--------------------------ADLELSTRFIQTKNNVHAALCDNMDTRSALD 320 (948)
Q Consensus 272 R~-l~~s~~~l~~----~~r~~~--------------------------ad~eL~~~l~el~e~F~aAL~DDFNTP~ALa 320 (948)
.+ ++|+++.+.. ++++.. .|..+...+.++...+.++| ++|+++.|+.
T Consensus 625 ~~D~~~s~~~l~~~~~~~~kl~N~~rf~~~nl~~~~~~~~~~~~~~l~~~D~~il~~l~~~~~~v~~~~-e~~~f~~a~~ 703 (912)
T PRK05743 625 SGDVRISDEILKQVAEAYRRIRNTLRFLLGNLNDFDPAKDAVPYEELLELDRWALHRLAELQEEILEAY-ENYDFHKVYQ 703 (912)
T ss_pred CCCeeecHHHHHHHHHHHHHHHHHHHHHHhCccCCCcccccCCchhCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 66 7888765431 222111 12233455677889999999 8999999999
Q ss_pred HHHHHH--HHHHhhhcC
Q psy6851 321 SIRDCI--SQVNIYLRG 335 (948)
Q Consensus 321 aLfeLV--raiN~yLd~ 335 (948)
+|++++ ..+|.|++.
T Consensus 704 ~l~~f~~~~ls~~Yie~ 720 (912)
T PRK05743 704 KLHNFCSVDLSAFYLDI 720 (912)
T ss_pred HHHHHhhhhhceeehee
Confidence 999999 466888763
No 66
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=98.20 E-value=4.9e-05 Score=90.92 Aligned_cols=237 Identities=12% Similarity=0.124 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHHHHhc--CCCCCCccc--cccccHHHHHHHHHHHHHHcCCeeeeCCcEEEeeccCCCCCCCCccccCCc
Q psy6851 101 SEMFKMETDKYSQFDE--TVLPPTVLT--RVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPNHYYAKLVPE 176 (948)
Q Consensus 101 ~el~~~~~~~f~~dm~--nV~~P~~~p--RvTe~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~f~~~g~~~YgKL~P~ 176 (948)
+.+.....+.|.+++. ||.- +.+. .-+-+-+.+- ..|+.|.++|++|+. |.+++++..|.+ . |.
T Consensus 231 ~~~~~~~l~~~~~~~~~l~V~f-D~~~~E~e~~~~~~~~-~v~~~L~~~g~~~~~-Ga~~~~~~~~~d--------~-~~ 298 (566)
T TIGR00456 231 KRLVEYSLEGIKETLARLNIHF-DSFVWEGESVKNGMVP-KVLEDLKEKGLVVED-GALWLDLTLFGD--------K-DK 298 (566)
T ss_pred HHHHHHHHHHHHHHHHHcCCce-eeeeccccccccccHH-HHHHHHHHCCCEEEc-CCEEEEcccccC--------C-CC
Confidence 3344445556665555 7744 4333 3223334444 567899999999988 999999866542 0 12
Q ss_pred cccccccccCCCCcCCCCCCCcccCCCCCCCC-CCcceeEeeccC-cccc---------ccccccCCccccccccccEEE
Q psy6851 177 AYGDTKTLQEGEVRGYPPWPARIEGLADETPN-RLKYHIFFYGTR-ETGI---------CRQDELFPYTEFKDKYGKVRV 245 (948)
Q Consensus 177 DFaLWK~ak~gEp~wespWg~~~~~m~~~~~G-RPGWHIEcLG~~-dih~---------GG~DL~FPHHEne~h~G~l~i 245 (948)
|..+-|. +|.+-..+. -+ +-+....- .+-+=|-+.|.. ..|. -|.. -| ..-.|.|+..|
T Consensus 299 ~~vl~ks--DGt~~Y~t~---Di-A~~~~k~~~~~d~iI~V~g~~q~~h~~~v~~~l~~lG~~--~~--~~l~h~~~~~V 368 (566)
T TIGR00456 299 DRVLQKS--DGTYLYLTR---DI-AYHLDKLERGFDKMIYVWGSDHHLHIAQFFAILEKLGFY--KK--KELIHLNFGMV 368 (566)
T ss_pred CeEEEEC--CCCceechh---hH-HHHHHHHhcCCCEEEEEecCcHHHHHHHHHHHHHHcCCC--CC--CceEEEEEEEE
Confidence 4444332 232200000 00 00000000 123334445543 3332 1211 11 12345667778
Q ss_pred cccchhhcchhHHHHHHHHHH---------------------------------HHHHHhh-cCCChhhhH---------
Q psy6851 246 HLSQKQQSLKLVVIMKEFFLN---------------------------------VKDHIRN-LKFPATTVS--------- 282 (948)
Q Consensus 246 ~geKMSKSLGN~vti~ef~l~---------------------------------ls~hyR~-l~~s~~~l~--------- 282 (948)
+|.|||||.||+|++.+++.. ++.--.+ .+|+.+.+.
T Consensus 369 ~~~kmSkr~Gn~V~~~dll~~~~~ra~~~i~~~~~~~~~~~~~~vg~dAvRy~~L~~~~~~d~~Fd~d~~~~~~~n~~~y 448 (566)
T TIGR00456 369 PLGSMKTRRGNVISLDNLLDEASKRAGNVITIKNDLEEEDVADAVGIGAVRYFDLSQNRETHYVFDWDAMLSFEGNTAPY 448 (566)
T ss_pred ECCCCCccCCceeeHHHHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceeeHHhhcCCCCCceecHHHHhccCCCCchh
Confidence 889999999999987743211 2221111 445443210
Q ss_pred ---HH-------HhhH---------------HHhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcCC-
Q psy6851 283 ---SF-------EKWT---------------QADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGT- 336 (948)
Q Consensus 283 ---~~-------~r~~---------------~ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~~- 336 (948)
.+ ++.. ..+..|...+..+.+.+..+| ++++.+.++..++++++.+|+|++..
T Consensus 449 iqYa~aR~~SIlrK~~~~~~~~~~~~~~~~~~~e~~Ll~~l~~~~~~v~~a~-~~~~p~~~~~~l~~La~~~N~yy~~~~ 527 (566)
T TIGR00456 449 IQYAHARICSILRKADIDGEKLIADDFSLLEEKEKELLKLLLQFPDVLEEAA-EELEPHVLTNYLYELASLFSSFYKACP 527 (566)
T ss_pred HHHHHHHHHHHHHhcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHH-HhCCcHHHHHHHHHHHHHHHHHHhcCc
Confidence 11 1111 112344556678889999999 89999999999999999999999653
Q ss_pred ----CCH-------HHHHHHHHHHHHHHhHccccc
Q psy6851 337 ----PNQ-------LLLRDIGAYVTKILTVFGCIG 360 (948)
Q Consensus 337 ----~~~-------~lL~~i~~~V~~mL~VLGL~~ 360 (948)
.+. .++..+...+..-|.+|||..
T Consensus 528 Vl~~~~~~~~~~RL~L~~a~~~vl~~gL~lLGI~~ 562 (566)
T TIGR00456 528 VLDAENENLAAARLALLKATRQTLKNGLQLLGIEP 562 (566)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 111 234455566777789999854
No 67
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=98.19 E-value=3.1e-06 Score=104.71 Aligned_cols=90 Identities=16% Similarity=0.194 Sum_probs=68.3
Q ss_pred cccccEEEcccchhhcchhHHHHHHH-----------HHHHHHHHhh-cCCChhhhHH----HHhhHH------------
Q psy6851 238 DKYGKVRVHLSQKQQSLKLVVIMKEF-----------FLNVKDHIRN-LKFPATTVSS----FEKWTQ------------ 289 (948)
Q Consensus 238 ~h~G~l~i~geKMSKSLGN~vti~ef-----------~l~ls~hyR~-l~~s~~~l~~----~~r~~~------------ 289 (948)
+|+|+| |||||+||+++..++ |++..++|++ ++|+++.+.. +.|+..
T Consensus 564 ~~~G~v-----KMSKS~GN~i~p~~~i~~ygaD~lRl~l~~~~~~~~d~~~s~~~l~~~~~~l~kl~~~~~~~~~~~~~~ 638 (805)
T PRK00390 564 LTQGMV-----KMSKSKGNVVDPDDIIEKYGADTARLFEMFAGPPEKDLEWSDSGVEGAYRFLQRVWRLVVDAKGEAGAL 638 (805)
T ss_pred eecCcE-----EeCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCccCCcccCHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 677888 999999999987764 3423468999 9999876652 233221
Q ss_pred ------HhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhh
Q psy6851 290 ------ADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYL 333 (948)
Q Consensus 290 ------ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yL 333 (948)
.+..+...+.++...+.++| ++|++..|++.|++++..++++.
T Consensus 639 ~~~~~~~D~~il~~l~~~i~~v~~~~-e~~~f~~ai~~l~~f~n~lsk~~ 687 (805)
T PRK00390 639 DVAALSEDKELRRKLHKTIKKVTEDI-ERLRFNTAIAALMELVNALYKAE 687 (805)
T ss_pred CcccChhhHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHH
Confidence 12234556778889999999 57999999999999999998876
No 68
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=98.09 E-value=5.9e-06 Score=102.95 Aligned_cols=113 Identities=19% Similarity=0.143 Sum_probs=80.0
Q ss_pred ccccccccccCCccccc----------------cccccEEE-cccchhhcchhHHHHHHHH----------HHHHHHH-h
Q psy6851 221 ETGICRQDELFPYTEFK----------------DKYGKVRV-HLSQKQQSLKLVVIMKEFF----------LNVKDHI-R 272 (948)
Q Consensus 221 dih~GG~DL~FPHHEne----------------~h~G~l~i-~geKMSKSLGN~vti~ef~----------l~ls~hy-R 272 (948)
|+|..|.|.+|.|.... .-+|+|.. +|+|||||+||+++..+++ .+++... .
T Consensus 480 d~~~~G~Dii~fw~~~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~KMSKS~GN~i~p~~~i~~ygaDalR~~l~~~~~~~ 559 (861)
T TIGR00422 480 DLLVTGYDIIFFWVARMIFRSLALTGQVPFKEVYIHGLVRDEQGRKMSKSLGNVIDPLDVIEKYGADALRFTLASLVTPG 559 (861)
T ss_pred ceeecchhhhhHHHHHHHHHHHHhcCCCchheEEEeeEEECCCCCCCCcCCCCCCCHHHHHHHhChHHHHHHHHhCCCCC
Confidence 68899999999998742 23577875 8999999999999876642 2233333 2
Q ss_pred h-cCCChhhhHHH----HhhH------------------------HHhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHH
Q psy6851 273 N-LKFPATTVSSF----EKWT------------------------QADLELSTRFIQTKNNVHAALCDNMDTRSALDSIR 323 (948)
Q Consensus 273 ~-l~~s~~~l~~~----~r~~------------------------~ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLf 323 (948)
+ ++|+.+.+... .++. ..|.-+...+..+...+.++| +++++..|+.+|+
T Consensus 560 ~d~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~-e~~~f~~A~~~l~ 638 (861)
T TIGR00422 560 DDINFDWKRVESARNFLNKLWNASRFVLMNLSDDLELSGGEEKLSLADRWILSKLNRTIKEVRKAL-DKYRFAEAAKALY 638 (861)
T ss_pred CCceecHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHH
Confidence 3 66776544311 1110 112234455677889999999 8999999999999
Q ss_pred HHH--HHHHhhhc
Q psy6851 324 DCI--SQVNIYLR 334 (948)
Q Consensus 324 eLV--raiN~yLd 334 (948)
+++ ..+|.|++
T Consensus 639 ~f~~~~~~n~Yie 651 (861)
T TIGR00422 639 EFIWNDFCDWYIE 651 (861)
T ss_pred HHHHHHHHHHHHH
Confidence 997 78999986
No 69
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=98.06 E-value=7.5e-06 Score=102.22 Aligned_cols=113 Identities=19% Similarity=0.179 Sum_probs=79.8
Q ss_pred ccccccccccCCccccc----------------cccccEE-EcccchhhcchhHHHHHHH-----------HHHHHH-HH
Q psy6851 221 ETGICRQDELFPYTEFK----------------DKYGKVR-VHLSQKQQSLKLVVIMKEF-----------FLNVKD-HI 271 (948)
Q Consensus 221 dih~GG~DL~FPHHEne----------------~h~G~l~-i~geKMSKSLGN~vti~ef-----------~l~ls~-hy 271 (948)
|++..|.|.+|.|...- .-+|+|. .+|+|||||+||+|...++ ++ ++. .+
T Consensus 475 d~~~~G~Dii~~W~a~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~KMSKSlGNvIdP~dvi~~yGaDalR~~l-l~~~~~ 553 (874)
T PRK05729 475 SVLVTGFDIIFFWVARMIMMGLHFTGQVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDLIDKYGADALRFTL-AALASP 553 (874)
T ss_pred ccccccccccchHHHHHHHHHHHhcCCCchhheEEeeeEECCCCCCcccCCCCCCCHHHHHHHhChHHHHHHH-HhCCCC
Confidence 68899999999987531 2257777 6999999999999977654 23 332 34
Q ss_pred hh-cCCChhhhHHH----H------hhH-------------------HHhHHHhHHHHHHHHHHHHHHhhcCChHHHHHH
Q psy6851 272 RN-LKFPATTVSSF----E------KWT-------------------QADLELSTRFIQTKNNVHAALCDNMDTRSALDS 321 (948)
Q Consensus 272 R~-l~~s~~~l~~~----~------r~~-------------------~ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaa 321 (948)
.+ ++|+.+.+... . |+. ..+.-+...+..+...+.++| +++++..|+..
T Consensus 554 ~~Di~fs~~~l~~~~~~~nkl~N~~Rf~~~~~~~~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~-e~y~f~~a~~~ 632 (874)
T PRK05729 554 GRDIRFDEERVEGYRNFANKLWNASRFVLMNLEGADVGELPDPEELSLADRWILSRLNRTVAEVTEAL-DKYRFDEAARA 632 (874)
T ss_pred CCCceeCHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHH
Confidence 44 77877655311 1 110 012223455677889999999 79999999999
Q ss_pred HHHHH--HHHHhhhcC
Q psy6851 322 IRDCI--SQVNIYLRG 335 (948)
Q Consensus 322 LfeLV--raiN~yLd~ 335 (948)
|++++ ..+|.|++.
T Consensus 633 l~~f~~~~~~~~Yle~ 648 (874)
T PRK05729 633 LYEFIWNEFCDWYLEL 648 (874)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 99998 588888874
No 70
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=98.06 E-value=1.4e-05 Score=100.73 Aligned_cols=113 Identities=11% Similarity=0.085 Sum_probs=77.4
Q ss_pred ccccccccccC-Cccccc---------------cccccEEE-cccchhhcchhHHHHHHH-----------HHHHHHHHh
Q psy6851 221 ETGICRQDELF-PYTEFK---------------DKYGKVRV-HLSQKQQSLKLVVIMKEF-----------FLNVKDHIR 272 (948)
Q Consensus 221 dih~GG~DL~F-PHHEne---------------~h~G~l~i-~geKMSKSLGN~vti~ef-----------~l~ls~hyR 272 (948)
|+|..|.|.++ -.|... .-+|++.. +|+|||||+||+|...++ |+ ++..|.
T Consensus 585 D~~~eG~Di~rgWF~s~ll~s~~~~~~~P~k~V~~HG~vld~~G~KMSKSlGNvIdP~~ii~~yGaD~lRl~l-ls~~~~ 663 (961)
T PRK13804 585 DLYLEGSDQHRGWFNSSLLESCGTRGRAPYKAVLTHGFTLDEKGEKMSKSLGNTVSPQDVIKQSGADILRLWV-ASVDYS 663 (961)
T ss_pred eEEEEEcccccHHHHHHHHHHHHhcCCCChhhEEEeccEECCCCCCccCCCCCcCCHHHHHHhcCHHHHHHHH-HhCCCC
Confidence 67777888875 222211 22577775 999999999999866543 44 466777
Q ss_pred h-cCCChhhhH----HHHhhHH--------------------------HhHHHhHHHHHHHHHHHHHHhhcCChHHHHHH
Q psy6851 273 N-LKFPATTVS----SFEKWTQ--------------------------ADLELSTRFIQTKNNVHAALCDNMDTRSALDS 321 (948)
Q Consensus 273 ~-l~~s~~~l~----~~~r~~~--------------------------ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaa 321 (948)
+ ++|+++.+. .++++.. .+.-+...+.++...+.++| ++|++..|+.+
T Consensus 664 ~D~~fs~~~l~~~~~~~~kL~N~~rf~l~nl~~~~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~-e~y~f~~a~~~ 742 (961)
T PRK13804 664 DDQRIGKEILKQVSETYRKLRNTLRWLLGNLAHFDPGEDVVAYADLPELERYMLHRLNELDGLVREAY-DAYDFKRIYKA 742 (961)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHhccccCCcccccCChhhcCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 7 888876542 1122111 12223445677889999999 89999999999
Q ss_pred HHHHH-H-HHHhhhcC
Q psy6851 322 IRDCI-S-QVNIYLRG 335 (948)
Q Consensus 322 LfeLV-r-aiN~yLd~ 335 (948)
|++++ . .+|.|++.
T Consensus 743 l~~f~~~~lsn~Yle~ 758 (961)
T PRK13804 743 LVNFVNVDLSAFYFDI 758 (961)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 99999 3 47999874
No 71
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=98.05 E-value=5.7e-06 Score=103.96 Aligned_cols=43 Identities=26% Similarity=0.241 Sum_probs=39.5
Q ss_pred CceeecCCCCCCCCCChhHHHHHhccCCCC-------------CCCccccchhhhH
Q psy6851 833 QLDIHTGGVDLKFPHHDNELAQAEGLPTHD-------------QEGKELSKGLAKK 875 (948)
Q Consensus 833 ~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~-------------~~g~kmsKsl~n~ 875 (948)
+.|+|++|.|++|+||.+.++++.|.++.. .+|+|||||+||+
T Consensus 573 P~D~~~~GkDii~~H~~~~i~~~~a~~~~~~~Pk~i~~~G~vl~~G~KMSKSlGNv 628 (938)
T TIGR00395 573 PLDWRISGKDLIPNHLTFYIFHHVAIFPEKFWPRGIVVNGYVMLEGKKMSKSKGNV 628 (938)
T ss_pred CceEEEEeeccccchHHHHHHHHHHcCCccccCcEEEEeceEEeCCccccCcCCCC
Confidence 689999999999999999999999987632 7999999999999
No 72
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=98.02 E-value=8.4e-06 Score=85.63 Aligned_cols=61 Identities=18% Similarity=0.262 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeeeCCcEEEeeccCC
Q psy6851 101 SEMFKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFD 163 (948)
Q Consensus 101 ~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~f~ 163 (948)
.+++..+.+.|.++++ ||. ++.++|.|+|++.|+ ++|+.|+++|++|+.+|.|||++.+|.
T Consensus 64 ~~~~~~~~~~~~~~~~~L~i~-~d~~~~es~~~~~~~-~~i~~L~~~g~~~~~~g~~~~~~~~~~ 126 (212)
T cd00671 64 RKLVEESIKADLETYGRLDVR-FDVWFGESSYLGLMG-KVVELLEELGLLYEEDGALWLDLTEFG 126 (212)
T ss_pred HHHHHHHHHHHHHHHHHhCCc-CceecchhhhhhHHH-HHHHHHHHCCCEEEeCCcEEEechhhC
Confidence 3334444445555554 998 799999999999999 799999999999999999999998874
No 73
>cd07955 Anticodon_Ia_Cys_like Anticodon-binding domain of cysteinyl tRNA synthetases and domain found in MshC. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA. The family also includes a domain of MshC, the rate-determining enzyme in the mycothiol biosynthetic pathway, which is specific to actinomycetes. The anticodon-binding site of CysRS lies C-terminal to this model's footprint and is not shared by MshC.
Probab=97.99 E-value=2.1e-05 Score=71.38 Aligned_cols=54 Identities=19% Similarity=0.212 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHHH-HhhhcCCCCHHHHHHHHHHHHHHHhHccc
Q psy6851 299 IQTKNNVHAALCDNMDTRSALDSIRDCISQV-NIYLRGTPNQLLLRDIGAYVTKILTVFGC 358 (948)
Q Consensus 299 ~el~e~F~aAL~DDFNTP~ALaaLfeLVrai-N~yLd~~~~~~lL~~i~~~V~~mL~VLGL 358 (948)
..+.++|.+||+||||||.||++||++++.+ |..-.. +. ......+.+..+||+
T Consensus 27 ~~~~~~F~~AL~DDLNTp~Ala~L~~l~k~i~~~~~~~-~~-----~~~~~~~~~~~~~~~ 81 (81)
T cd07955 27 EALVARLREALADDLDTPKALAALDAWAREALSRGGTD-PD-----APALVRTAVDALLGV 81 (81)
T ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHhcCCCC-cc-----cHHHHHHHHHHHcCC
Confidence 3567899999999999999999999999988 764333 21 123346778888885
No 74
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.97 E-value=1.7e-06 Score=93.00 Aligned_cols=43 Identities=14% Similarity=-0.072 Sum_probs=39.2
Q ss_pred HHHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cc
Q psy6851 631 WEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KK 674 (948)
Q Consensus 631 ~~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~ 674 (948)
+++.|++||+.||+ .|+..++.|++++.+.+++++|+++|. |.
T Consensus 54 ~~~~i~~dL~wLGl-~~d~~~~qS~r~~~y~~~~~~Li~~G~aY~ 97 (240)
T cd09287 54 AYDMIPEDLEWLGV-KWDEVVIASDRIELYYEYARKLIEMGGAYV 97 (240)
T ss_pred HHHHHHHHHHHcCC-CCCCccchhccHHHHHHHHHHHHHcCCccc
Confidence 44558999999999 779999999999999999999999999 96
No 75
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=97.90 E-value=2.2e-05 Score=97.98 Aligned_cols=114 Identities=17% Similarity=0.115 Sum_probs=76.2
Q ss_pred ccccccccccCCcccc----------------ccccccEEE-cccchhhcchhHHHHHHHH----------HHHHHHHhh
Q psy6851 221 ETGICRQDELFPYTEF----------------KDKYGKVRV-HLSQKQQSLKLVVIMKEFF----------LNVKDHIRN 273 (948)
Q Consensus 221 dih~GG~DL~FPHHEn----------------e~h~G~l~i-~geKMSKSLGN~vti~ef~----------l~ls~hyR~ 273 (948)
|++++|.|.++-|.-. -..+|+|.. +|+|||||+||+|+..+++ .+++..+.+
T Consensus 566 d~~i~G~Di~r~Wf~~~~~~~~~~~~~~P~k~v~~hG~vl~~~G~KMSKSkGNvI~p~d~i~~yGaDalR~~ll~~~~~~ 645 (861)
T TIGR00392 566 DFILEGSDQTRGWFYSSLAIGTALFGQAPYKNVITHGFTLDEKGRKMSKSLGNVVDPLKVINKYGADILRLYVASSDPWE 645 (861)
T ss_pred eEEEEecchhccHHHHHHHHHHHHcCCCChHhhEecceEECCCCCCcCCCCCCCCCHHHHHHHcCHHHHHHHHHhCCCCC
Confidence 6788888887633221 023678774 8999999999999877642 113334444
Q ss_pred -cCCChhhhHHH------------HhhH---------------------HHhHHHhHHHHHHHHHHHHHHhhcCChHHHH
Q psy6851 274 -LKFPATTVSSF------------EKWT---------------------QADLELSTRFIQTKNNVHAALCDNMDTRSAL 319 (948)
Q Consensus 274 -l~~s~~~l~~~------------~r~~---------------------~ad~eL~~~l~el~e~F~aAL~DDFNTP~AL 319 (948)
++|+.+.+... +... ..+..+...+..+...+.++| ++|++..|+
T Consensus 646 D~~fs~~~l~~~~~~~~n~l~N~~~~~~~~~~l~~~~~~~~~~~~~~l~~~d~~ll~~l~~~~~~v~~~~-e~~~~~~a~ 724 (861)
T TIGR00392 646 DLRFSDEILKQVVEKYRKIRWNTYRFLLTYANLDKFDPLFNSVAVEKFPEEDRWILSRLNSLVEEVNEAL-EKYNFHKVL 724 (861)
T ss_pred CceECHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccccccCCHHHHHHHHHHHHHHHHHHHHH-HhccHHHHH
Confidence 67776654311 1110 012223445667888999999 689999999
Q ss_pred HHHHHHHHH--HHhhhcC
Q psy6851 320 DSIRDCISQ--VNIYLRG 335 (948)
Q Consensus 320 aaLfeLVra--iN~yLd~ 335 (948)
..|++++.. +|.|++.
T Consensus 725 ~~l~~f~~~~l~n~Yi~~ 742 (861)
T TIGR00392 725 RALQDFIVEELSNWYIRI 742 (861)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999986 8999863
No 76
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=97.88 E-value=9.8e-06 Score=92.80 Aligned_cols=71 Identities=14% Similarity=0.238 Sum_probs=53.9
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhc--CCCCCCcccccc--ccHHHHHHHHHHHHHHcCCeeeeCCcEEEeec
Q psy6851 88 AQEAKEAQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVS--EYIPEIVASYIEKIIANGLAYESNGSVYFNVN 160 (948)
Q Consensus 88 ~~~~~a~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvT--e~IpeII~~~I~~LI~~G~AYes~GsVYFDv~ 160 (948)
.-+.+|.+.|+++.+++.++.+.|.++++ ||. .+.+.|-| +|..-.- ++.++|.++|+.|..+-..+|++.
T Consensus 51 ~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~~~I~-~D~F~rTt~~~h~~~v~-~i~~~L~~~G~I~~~~~~~~Yc~~ 125 (391)
T PF09334_consen 51 KIETAAEKQGIDPEEFCDKYSAKFKELLEALNIS-YDRFIRTTDDRHKEFVQ-EIFKRLYDNGYIYKREYEGWYCPS 125 (391)
T ss_dssp HHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT----SEEEETTSHHHHHHHH-HHHHHHHHTTSEEEEEEEEEEETT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCC-CcceeCCCCHHHHHHHH-HHHHHHHhcCceeecccceeEecC
Confidence 34556677899999999999999998877 774 46777755 6766666 799999999999998777888764
No 77
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=97.79 E-value=4.4e-05 Score=95.15 Aligned_cols=83 Identities=12% Similarity=0.134 Sum_probs=58.5
Q ss_pred chhhcchhHHHHHHH-----------HHHHHHHHhh-cCCChhhhHH----HHhhHH----------------------H
Q psy6851 249 QKQQSLKLVVIMKEF-----------FLNVKDHIRN-LKFPATTVSS----FEKWTQ----------------------A 290 (948)
Q Consensus 249 KMSKSLGN~vti~ef-----------~l~ls~hyR~-l~~s~~~l~~----~~r~~~----------------------a 290 (948)
|||||+||+|++.++ |++..++|++ ++|+++.+.. +.|+.. .
T Consensus 604 KMSKS~GN~v~p~~ii~~ygaDalRl~~l~~~~~~~d~~~~~~~l~~~~~~l~kl~~~~~~~~~~~~~~~~~~~~~l~~~ 683 (842)
T TIGR00396 604 KMSKSKGNGIDPQEIVKKHGADALRLYIMFMGPIAASLEWNDSGLEGARRFLDRVWNLFYNILGELDGKTYLTPTILEEA 683 (842)
T ss_pred hhhhcCCCcCCHHHHHHHcCchHHHHHHHhcCCcCCCCccCHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccCCHH
Confidence 999999999988764 3423568998 9999887642 222221 1
Q ss_pred hHHHhHHHHHHHHHHHHHHhhcCC-hHHHHHHHHHHHHHHHhh
Q psy6851 291 DLELSTRFIQTKNNVHAALCDNMD-TRSALDSIRDCISQVNIY 332 (948)
Q Consensus 291 d~eL~~~l~el~e~F~aAL~DDFN-TP~ALaaLfeLVraiN~y 332 (948)
+..+...+..+...+.++|+ ++. +..|+++|++|++....+
T Consensus 684 d~~il~~l~~~i~~v~~~~e-~y~~fn~ai~~l~~f~n~L~~~ 725 (842)
T TIGR00396 684 QKELRRDVHKFLKKVTEDLE-KLESFNTAISAMMILLNALYKA 725 (842)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHhh
Confidence 22234456678899999995 555 777999999999876664
No 78
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=97.74 E-value=6.9e-05 Score=95.40 Aligned_cols=95 Identities=15% Similarity=0.139 Sum_probs=64.8
Q ss_pred cccEEE-cccchhhcchhHHHHHHH-----------HHHHHHHHhh-cCCChhhhHHH----Hhh------H--------
Q psy6851 240 YGKVRV-HLSQKQQSLKLVVIMKEF-----------FLNVKDHIRN-LKFPATTVSSF----EKW------T-------- 288 (948)
Q Consensus 240 ~G~l~i-~geKMSKSLGN~vti~ef-----------~l~ls~hyR~-l~~s~~~l~~~----~r~------~-------- 288 (948)
+|+|.. +|+|||||+||+|...++ |++....+.+ ++|+.+.+... .++ .
T Consensus 528 hG~v~d~~G~KMSKSkGNvIdP~dvIe~yGaDalR~~L~~~~~~g~D~~fs~~~l~~~~~f~nkl~N~~R~~~~~~~~~~ 607 (1052)
T PRK14900 528 HPMVRDEKGQKMSKTKGNVIDPLVITEQYGADALRFTLAALTAQGRDIKLAKERIEGYRAFANKLWNASRFALMNLSGYQ 607 (1052)
T ss_pred cccEECCCCCCccCCCCCCCCHHHHHHHhCcHHHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 578876 899999999999876553 3321222333 67776544321 110 0
Q ss_pred ------------HHhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH--HHHHhhhcC
Q psy6851 289 ------------QADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCI--SQVNIYLRG 335 (948)
Q Consensus 289 ------------~ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLV--raiN~yLd~ 335 (948)
..|..+...+..+...+..+| +++++..|+..|++++ ..+|.||+.
T Consensus 608 ~~~~~~~~~~~~~~D~wils~l~~~i~~v~~~~-e~y~f~~A~~~i~~f~~~~~~n~Yie~ 667 (1052)
T PRK14900 608 ERGEDPARLARTPADRWILARLQRAVNETVEAL-EAFRFNDAANAVYAFVWHELCDWYIEL 667 (1052)
T ss_pred cccccccccccCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHhhhHHHHHh
Confidence 112223445667889999999 8999999999999998 588999974
No 79
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=97.74 E-value=6.4e-05 Score=95.06 Aligned_cols=96 Identities=25% Similarity=0.238 Sum_probs=65.6
Q ss_pred cccccEEE-cccchhhcchhHHHHHHHH----------HHHHHHH-hh-cCCChhh-hHH----HHhhH-----------
Q psy6851 238 DKYGKVRV-HLSQKQQSLKLVVIMKEFF----------LNVKDHI-RN-LKFPATT-VSS----FEKWT----------- 288 (948)
Q Consensus 238 ~h~G~l~i-~geKMSKSLGN~vti~ef~----------l~ls~hy-R~-l~~s~~~-l~~----~~r~~----------- 288 (948)
..+|+|.. +|+|||||+||+|...+++ .+++..+ ++ ++|+.+. +.. +.++.
T Consensus 580 ~~hG~Vld~~G~KMSKSlGNvIdP~dli~~yGaDalR~~lls~~~~~~D~~fs~~~~~~~~~~~l~kl~N~~~f~~~y~~ 659 (975)
T PRK06039 580 LVHGHVLDEDGQKMSKSLGNYVDPFEVFDKYGADALRWYLLSSSAPWEDLRFSEDGVREVVRKFLLTLWNVYSFFVLYAN 659 (975)
T ss_pred EEeeeEECCCCCCcCCCCCCcCCHHHHHHHhChHHHHHHHHhCCCCCCCceechhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34677764 8999999999999876642 2244444 33 7788766 321 11110
Q ss_pred -----------------HHhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHH-Hhhhc
Q psy6851 289 -----------------QADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQV-NIYLR 334 (948)
Q Consensus 289 -----------------~ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVrai-N~yLd 334 (948)
..+.-+...+..+...+.++| +++++..|+..|++++... |-|+.
T Consensus 660 ~~~~~~~~~~~~~~~~~~~D~wils~l~~li~~v~~a~-e~y~~~~A~~~l~~f~~~lsn~Yi~ 722 (975)
T PRK06039 660 LDGFDYPPAEDEVDSLNELDRWILSRLNSLVKEVTEAL-DNYDITKAARAIRDFVDDLSNWYIR 722 (975)
T ss_pred hccCCccccccccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHHHHH
Confidence 012223445677889999999 7899999999999999765 77875
No 80
>PLN02959 aminoacyl-tRNA ligase
Probab=97.74 E-value=5.2e-05 Score=96.71 Aligned_cols=107 Identities=15% Similarity=0.092 Sum_probs=71.7
Q ss_pred CccccccccccCCccccc-----------------cccccEEEcccchhhcchhHHHHHHH-----------HHHHHHHH
Q psy6851 220 RETGICRQDELFPYTEFK-----------------DKYGKVRVHLSQKQQSLKLVVIMKEF-----------FLNVKDHI 271 (948)
Q Consensus 220 ~dih~GG~DL~FPHHEne-----------------~h~G~l~i~geKMSKSLGN~vti~ef-----------~l~ls~hy 271 (948)
.|+..+|.|++|.|..+. ..+|+|.++|+|||||+||+|+..++ ++...+.+
T Consensus 672 ~Dl~~sG~Dii~~wl~~~l~~~~al~~~~P~p~~v~v~G~V~~~G~KMSKSkGNvI~p~diI~kyGADalRl~la~~~~~ 751 (1084)
T PLN02959 672 FDLRVSGKDLIQNHLTFAIYNHTAIWAEEHWPRGFRCNGHLMLNSEKMSKSTGNFLTLRQAIEEFSADATRFALADAGDG 751 (1084)
T ss_pred CeEEEecccHHHHHHHHHHHHHHHhcCCCCCCceEEEccEEecCCcCccccCCCcCCHHHHHHHhCchHHHHHHhhcCCc
Confidence 377889999999996531 34689999999999999999987654 33222234
Q ss_pred hh-cCCChhhhHH-HHhhH-----------------------HHhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHH-HHH
Q psy6851 272 RN-LKFPATTVSS-FEKWT-----------------------QADLELSTRFIQTKNNVHAALCDNMDTRSALDSI-RDC 325 (948)
Q Consensus 272 R~-l~~s~~~l~~-~~r~~-----------------------~ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaL-feL 325 (948)
.+ .+|+.+..+. ..++. ..|.-+...+..+...+.++| +++++..|+... ++|
T Consensus 752 ~~D~nF~~k~~n~~~~~l~n~~~~~~~~~~~~~~~~~~~~~~~~D~wils~l~~~i~~v~~a~-e~y~f~~A~~~~~Yel 830 (1084)
T PLN02959 752 VDDANFVFETANAAILRLTKEIAWMEEVLAAESSLRTGPPSTYADRVFENEINIAIAETEKNY-EAMMFREALKSGFYDL 830 (1084)
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHHHHhhhhhcccCCcccCCHHHHHHHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHH
Confidence 44 7777754321 11111 012223455677888999999 789999999984 334
Q ss_pred HH
Q psy6851 326 IS 327 (948)
Q Consensus 326 Vr 327 (948)
..
T Consensus 831 ~~ 832 (1084)
T PLN02959 831 QA 832 (1084)
T ss_pred HH
Confidence 43
No 81
>PLN02943 aminoacyl-tRNA ligase
Probab=97.73 E-value=4.6e-05 Score=96.11 Aligned_cols=94 Identities=14% Similarity=0.142 Sum_probs=67.8
Q ss_pred ccEE-EcccchhhcchhHHHHHHH----------HHHHHHHHhh-cCCChhhhHH----HHhhHH---------------
Q psy6851 241 GKVR-VHLSQKQQSLKLVVIMKEF----------FLNVKDHIRN-LKFPATTVSS----FEKWTQ--------------- 289 (948)
Q Consensus 241 G~l~-i~geKMSKSLGN~vti~ef----------~l~ls~hyR~-l~~s~~~l~~----~~r~~~--------------- 289 (948)
|++. .+|+|||||+||+|...++ |.+++.+|++ ++|+++.+.. +.++..
T Consensus 574 g~v~~~~G~KMSKS~GN~i~p~~~i~~ygaDalR~~l~~~~~~~d~~fs~~~l~~~~~~~~kl~N~~rf~~~~l~~~~~~ 653 (958)
T PLN02943 574 GLIRDSQGRKMSKTLGNVIDPLDTIKEFGTDALRFTLALGTAGQDLNLSTERLTSNKAFTNKLWNAGKFVLQNLPSQSDT 653 (958)
T ss_pred ccEECCCCCcccCcCCCCCCHHHHHHhcCChHHHHHHHhCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 4444 5889999999999987764 2336678877 9999876531 112111
Q ss_pred ----------------------HhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH--HHHHhhhcC
Q psy6851 290 ----------------------ADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCI--SQVNIYLRG 335 (948)
Q Consensus 290 ----------------------ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLV--raiN~yLd~ 335 (948)
.|.-+...+..+...+.++| +++++..|+..|++++ ..+|.|++.
T Consensus 654 ~~~~~~~~~~~~~~~~~~~l~~~D~wilskl~~~i~~v~~~~-e~y~f~~A~~~i~~f~~~~~~d~YiE~ 722 (958)
T PLN02943 654 SAWEHILACKFDKEESLLSLPLPECWVVSKLHELIDSVTTSY-DKYFFGDVGREIYDFFWSDFADWYIEA 722 (958)
T ss_pred ccccccccccCCccccccccCHHHHHHHHHHHHHHHHHHHHH-HhcChhHHHHHHHHHHHHHHHHHHHHh
Confidence 01112345667888999999 8899999999999995 889999974
No 82
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=97.62 E-value=0.0012 Score=79.10 Aligned_cols=230 Identities=12% Similarity=0.113 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeeeCCcEEEeeccCCCCCCCCccccCCccc
Q psy6851 101 SEMFKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPNHYYAKLVPEAY 178 (948)
Q Consensus 101 ~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~f~~~g~~~YgKL~P~DF 178 (948)
+.+.....+.|.+.+. ||.= +.+--=+-|-+.+= +.|++|.++|++|+++|.++++++.|.+ .|+
T Consensus 230 ~~~~~~~l~~~~~~~~~l~V~f-D~~~~es~~~~~~~-~v~~~L~~~g~~~e~dGa~~~~~~~~g~-----------~~~ 296 (562)
T PRK12451 230 NWFRHESLKEFSRIYELLGVEF-TNFQGEAFYNDLME-DFIGILEEHDLLEESEGALVVNLEEEGM-----------PPC 296 (562)
T ss_pred HHHHHHHHHHHHHHHHHcCCCc-eeecchHhhhhhHH-HHHHHHHHCCCEEecCCeEEEEecccCC-----------Cce
Confidence 3334444556665555 8854 34444455555554 6889999999999999999998755421 123
Q ss_pred cccccccCCCCcCCC------CCCCcccCCCCCCCCC--CcceeEeeccC-cccc---------ccccccCCccccc--c
Q psy6851 179 GDTKTLQEGEVRGYP------PWPARIEGLADETPNR--LKYHIFFYGTR-ETGI---------CRQDELFPYTEFK--D 238 (948)
Q Consensus 179 aLWK~ak~gEp~wes------pWg~~~~~m~~~~~GR--PGWHIEcLG~~-dih~---------GG~DL~FPHHEne--~ 238 (948)
.+-|. +|.+-..+ -|- ..| +-+=|-+.|.. ..|. -|.+ + -++- .
T Consensus 297 vl~ks--DGt~~Y~t~DiA~~~~k----------~~~~~~d~~IyV~g~dq~~h~~~l~~~~~~lg~~---~-~~~l~h~ 360 (562)
T PRK12451 297 LIRKS--DGATIYATRDLTAALYR----------QNTFGFDKALYVVGPEQSLHFNQFFTVLKKLGYT---W-VDGMEHV 360 (562)
T ss_pred EEEeC--CCccccchhHHHHHHHH----------hhccCCCEEEEEeCCcHHHHHHHHHHHHHHcCCC---c-ccCeEEE
Confidence 33222 22110000 000 011 23345455553 3332 1211 0 1122 3
Q ss_pred ccccEEEcccchhhcchhHHHHHHHHHHHHH-----------------------------------HHhh-cCCChhh-h
Q psy6851 239 KYGKVRVHLSQKQQSLKLVVIMKEFFLNVKD-----------------------------------HIRN-LKFPATT-V 281 (948)
Q Consensus 239 h~G~l~i~geKMSKSLGN~vti~ef~l~ls~-----------------------------------hyR~-l~~s~~~-l 281 (948)
.+|+|...|.|||+=.||++++.|++-.... ...+ +.|..+. +
T Consensus 361 ~~g~V~~~g~kmStR~G~~v~l~dLldea~~~a~~~~~~~~~~l~~~~~~a~~vg~~Airy~~l~~~~~~~~~Fd~d~~l 440 (562)
T PRK12451 361 PFGLILKDGKKMSTRKGRVVLLEEVLEEAIELAKQNIEEKNPNLKQKEEVAKQVGVGAVIFHDLKNERMHNIEFSLENML 440 (562)
T ss_pred eeeeEecCCCCCcCCCCCeeEHHHHHHHHHHHHHHHHHhhccccccHHHHHHHhccceeeeHHhhcCCCCCceECHHHHh
Confidence 3678888999999999999999987642111 0001 3343332 1
Q ss_pred H-----------HHHhhH-------------------HHhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHh
Q psy6851 282 S-----------SFEKWT-------------------QADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNI 331 (948)
Q Consensus 282 ~-----------~~~r~~-------------------~ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~ 331 (948)
+ +..|.. ..+..+...+..+.+.+..+| ++++.+.++..|+++++..|+
T Consensus 441 ~~~g~t~pYiQYa~AR~~SIlrka~~~~~~~~~~l~~~~E~~Ll~~L~~~~~~v~~a~-e~~ep~~~~~yl~~LA~~fN~ 519 (562)
T PRK12451 441 KFEGETGPYVQYTHARACSILRKESVEFETCTFALKDDYSWSVVKLLNKFPQVIEAAF-NKNEPSVISKYVLDVAQSFNK 519 (562)
T ss_pred CcCCCccHHHHHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHH
Confidence 0 111111 122345556777889999999 899999999999999999999
Q ss_pred hhcCCC---C-------HHHHHHHHHHHHHHHhHccccc
Q psy6851 332 YLRGTP---N-------QLLLRDIGAYVTKILTVFGCIG 360 (948)
Q Consensus 332 yLd~~~---~-------~~lL~~i~~~V~~mL~VLGL~~ 360 (948)
|++... . ..++..+...+..-|.+|||..
T Consensus 520 fy~~~~Vl~~~~~~~~RL~L~~a~~~vL~~gL~LLGI~~ 558 (562)
T PRK12451 520 YYGNVRILEESAEKDSRLALVYAVTVVLKEGLRLLGVEA 558 (562)
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 987521 1 1234455566777788999854
No 83
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=97.54 E-value=0.00012 Score=91.98 Aligned_cols=43 Identities=23% Similarity=0.230 Sum_probs=39.3
Q ss_pred CceeecCCCCCCCCCChhHHHHHhccCCCC-------------CCCccccchhhhH
Q psy6851 833 QLDIHTGGVDLKFPHHDNELAQAEGLPTHD-------------QEGKELSKGLAKK 875 (948)
Q Consensus 833 ~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~-------------~~g~kmsKsl~n~ 875 (948)
+.|+|++|.|+++.|+-.-+.++.++++.. .+|+|||||+||+
T Consensus 530 P~D~~~~GkDii~~Hl~~~~~~~~a~~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNv 585 (897)
T PRK12300 530 PVDWRHSGKDLIPNHLTFFIFNHVAIFPEEKWPRGIVVNGFVLLEGKKMSKSKGNV 585 (897)
T ss_pred CceEEEeeeccCccHHHHHHHHHHHhcCCCccCcEEEEcceEEECCccccCcCCCC
Confidence 689999999999999999999999987642 6899999999999
No 84
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.51 E-value=0.00025 Score=87.52 Aligned_cols=115 Identities=14% Similarity=0.054 Sum_probs=73.7
Q ss_pred ccccccccccCCccccc----------------------cccccEEE-cccchhhcchhHHHHHHH-----------HHH
Q psy6851 221 ETGICRQDELFPYTEFK----------------------DKYGKVRV-HLSQKQQSLKLVVIMKEF-----------FLN 266 (948)
Q Consensus 221 dih~GG~DL~FPHHEne----------------------~h~G~l~i-~geKMSKSLGN~vti~ef-----------~l~ 266 (948)
|+-+||.||+=-|--+. ...|||.. +|+|||||.||+|+..+. |.+
T Consensus 528 D~yigG~ehavlHLly~rF~Hkal~d~g~~p~~epf~~L~~qGmVl~~~g~KMSKSKgN~v~p~~~i~~yGADt~Rl~~m 607 (814)
T COG0495 528 DLYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDEPFKKLITQGMVLGEEGEKMSKSKGNVVDPEEAVEKYGADTVRLYIM 607 (814)
T ss_pred heeecchhHHHHHHHHHHHHHHHhcccCcCCCccchhhhhccceEEecCCCccccccCCCCCHHHHHHHhCchHHHHHHH
Confidence 56689999975553321 34689999 799999999999987764 333
Q ss_pred HHHHHhh-cCCChhhhHHH----HhhHHHh----------------HHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Q psy6851 267 VKDHIRN-LKFPATTVSSF----EKWTQAD----------------LELSTRFIQTKNNVHAALCDNMDTRSALDSIRDC 325 (948)
Q Consensus 267 ls~hyR~-l~~s~~~l~~~----~r~~~ad----------------~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeL 325 (948)
..+-.-+ ++|++..+.+. +|+...- ..+.-.+..+...+.+.+...+-.-.|++.+++|
T Consensus 608 ~~ap~~~d~~W~e~gv~g~~rfL~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~v~~~~e~~~~~nt~i~~~m~l 687 (814)
T COG0495 608 FAAPPEQDLEWSESGVEGARRFLQRVWNLVKEHLEKLVEELTKEQGKEDRWLLHRTIKKVTEDFEARQTFNTAIAALMEL 687 (814)
T ss_pred hhCChhhCCCCChhhhHHHHHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333 88888776632 2222210 1111223344555555554436667899999999
Q ss_pred HHHHHhhhcC
Q psy6851 326 ISQVNIYLRG 335 (948)
Q Consensus 326 VraiN~yLd~ 335 (948)
++....|...
T Consensus 688 ~N~l~~~~~~ 697 (814)
T COG0495 688 LNALRKYLRR 697 (814)
T ss_pred HHHHHHHHhc
Confidence 9999988764
No 85
>PLN02882 aminoacyl-tRNA ligase
Probab=97.47 E-value=0.00038 Score=89.44 Aligned_cols=96 Identities=20% Similarity=0.203 Sum_probs=65.9
Q ss_pred cccccEEE-cccchhhcchhHHHHHHH-----------HHHHHHHHh--h-cCCChhhhHH-----HHhhHH--------
Q psy6851 238 DKYGKVRV-HLSQKQQSLKLVVIMKEF-----------FLNVKDHIR--N-LKFPATTVSS-----FEKWTQ-------- 289 (948)
Q Consensus 238 ~h~G~l~i-~geKMSKSLGN~vti~ef-----------~l~ls~hyR--~-l~~s~~~l~~-----~~r~~~-------- 289 (948)
..+|++.. +|+|||||+||++...++ |+ +++.+. . +.|+.+.+.. +.++..
T Consensus 602 ivhG~vlde~G~KMSKSlGNvIdP~evi~~YGADaLR~~L-l~s~~~~~~d~~fs~~~v~~~~~~~l~kl~Na~rfl~~~ 680 (1159)
T PLN02882 602 ICNGLVLAEDGKKMSKSLKNYPDPNEVIDKYGADALRLYL-INSPVVRAEPLRFKEEGVFGVVKDVFLPWYNAYRFLVQN 680 (1159)
T ss_pred EEccEEECCCCCCcccCCCCCCCHHHHHHHhCcHHHHHHH-HhCCcccCcCcccCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45788887 799999999998864432 34 455542 3 5676554321 111110
Q ss_pred --------------------------HhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH-HHHhhhcC
Q psy6851 290 --------------------------ADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCIS-QVNIYLRG 335 (948)
Q Consensus 290 --------------------------ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVr-aiN~yLd~ 335 (948)
.|.-+...+..+...+.++| +++++..|+..|++++. .+|.|++.
T Consensus 681 ~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wIls~l~~li~~v~~~m-e~y~f~~A~~~I~~Fv~~lsN~YIe~ 752 (1159)
T PLN02882 681 AKRLEVEGGAPFVPLDLAKLQNSANVLDRWINSATQSLVKFVREEM-GAYRLYTVVPYLVKFIDNLTNIYVRF 752 (1159)
T ss_pred hhhhhhccccCCCccccccccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHhHHHHHh
Confidence 12223445677889999999 88999999999999997 58999974
No 86
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=97.46 E-value=8e-05 Score=88.15 Aligned_cols=83 Identities=20% Similarity=0.245 Sum_probs=52.7
Q ss_pred CCcCCCCCCCcccCCCCCCCCCCcceeEeeccC-ccccccccc-------cC----CccccccccccEEE--cccchhhc
Q psy6851 188 EVRGYPPWPARIEGLADETPNRLKYHIFFYGTR-ETGICRQDE-------LF----PYTEFKDKYGKVRV--HLSQKQQS 253 (948)
Q Consensus 188 Ep~wespWg~~~~~m~~~~~GRPGWHIEcLG~~-dih~GG~DL-------~F----PHHEne~h~G~l~i--~geKMSKS 253 (948)
...|..-|+.+|. --|=..|-+|.. .+.+||-|. +| |.+ ..++++++ +|+|||||
T Consensus 210 KL~WkvdW~~RW~--------~lgV~~Ep~GkDH~~~ggsy~~~~~ia~~~l~~~~P~~---~~ye~v~L~~~g~KMSKS 278 (515)
T TIGR00467 210 KLPWRVDWPARWK--------IEKVTFEPAGKDHAAAGGSYDTGVNIAKEIFQYSPPVT---VQYEWISLKGKGGKMSSS 278 (515)
T ss_pred ccCCCCCcHhhHh--------hhCcccccCCCCccCccCCchhHHHHHHHHhCCCCCcC---cEEEEEEEcCCCccccCC
Confidence 4578888887662 222233446654 333444454 34 322 23455555 46799999
Q ss_pred chhHHHHHHH----------HHHHHHHHhh-cCCChhhh
Q psy6851 254 LKLVVIMKEF----------FLNVKDHIRN-LKFPATTV 281 (948)
Q Consensus 254 LGN~vti~ef----------~l~ls~hyR~-l~~s~~~l 281 (948)
+||+++++++ |+.++.+|++ ++|+.+.+
T Consensus 279 ~Gn~itl~dll~~~~pdalR~~~l~~~~~~~ldFd~~~l 317 (515)
T TIGR00467 279 KGDVISVKDVLEVYTPEITRFLFARTKPEFHISFDLDVI 317 (515)
T ss_pred CCCCccHHHHHHHcCHHHHHHHHhccCCCCCCcCCHHHH
Confidence 9999999875 3447889988 88987654
No 87
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=97.17 E-value=0.00096 Score=84.85 Aligned_cols=40 Identities=15% Similarity=0.250 Sum_probs=33.3
Q ss_pred HhHHHHHHHHHHHHHHhhcCChHHHHHHHHHH--HHHHHhhhc
Q psy6851 294 LSTRFIQTKNNVHAALCDNMDTRSALDSIRDC--ISQVNIYLR 334 (948)
Q Consensus 294 L~~~l~el~e~F~aAL~DDFNTP~ALaaLfeL--VraiN~yLd 334 (948)
+...+..+...+.++| ++|++..|+.+|+++ ...+|.|++
T Consensus 714 Ils~L~~~i~~v~~~~-e~y~f~~A~~~i~~F~~~~~~n~Yie 755 (995)
T PTZ00419 714 ILHRLNVAIKEVTEGF-KEYDFSEATQATYNFWLYELCDVYLE 755 (995)
T ss_pred HHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHhhHHHHHH
Confidence 3445667889999999 789999999999996 467888886
No 88
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.16 E-value=0.00048 Score=82.24 Aligned_cols=60 Identities=15% Similarity=-0.027 Sum_probs=54.3
Q ss_pred ccHHHHHHHHHHHHhhcCCCCCCeeecccc--cHHHHHHHHhCcccCCC-cccCCcccccCCCC
Q psy6851 626 TLPKHWEAEFHKDMADLNVLPPTVLTRVSE--YIPEIVASAQTPKPAAA-KKAESSSDDDSSSE 686 (948)
Q Consensus 626 ~~~~~~~~~f~~dm~~L~v~~p~~~~rvse--~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvsse 686 (948)
+|+++|-+.|.++.+.|||.- |.+.|+|+ |..-+-++.++|.++|+ |...-..+|+++.+
T Consensus 71 el~d~~~~~~~~~~~~l~Isf-D~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e 133 (558)
T COG0143 71 ELVDKNHEEFKELFKALNISF-DNFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCE 133 (558)
T ss_pred HHHHHHHHHHHHHHHHhCCcc-cccccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEccccc
Confidence 467789999999999999987 99999985 88889999999999999 99988899999886
No 89
>PLN02843 isoleucyl-tRNA synthetase
Probab=96.98 E-value=0.0013 Score=83.58 Aligned_cols=45 Identities=18% Similarity=0.181 Sum_probs=40.7
Q ss_pred CCCceeecCCCCCCCCCChhHHHHHhccCCCC-------------CCCccccchhhhH
Q psy6851 831 GPQLDIHTGGVDLKFPHHDNELAQAEGLPTHD-------------QEGKELSKGLAKK 875 (948)
Q Consensus 831 g~~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~-------------~~g~kmsKsl~n~ 875 (948)
.-+.|+|..|.|++|.|+...+..+.++.+.. .+|+||||||||+
T Consensus 562 ~~PaDl~~eG~Di~rgWf~s~l~~~~~~~g~~Pfk~v~~HG~vld~~G~KMSKSlGNv 619 (974)
T PLN02843 562 SYPADLYLEGSDQHRGWFQSSLLTSVATKGKAPYKSVLTHGFVLDEKGFKMSKSLGNV 619 (974)
T ss_pred CCCceeeeeeccccchHHHHHHHHHHHhcCCCccceEEEeccEECCCCCCcCCCCCCc
Confidence 35789999999999999999999999988763 3799999999999
No 90
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=96.95 E-value=0.0019 Score=83.41 Aligned_cols=40 Identities=18% Similarity=0.297 Sum_probs=33.9
Q ss_pred HhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH-HHHhhhc
Q psy6851 294 LSTRFIQTKNNVHAALCDNMDTRSALDSIRDCIS-QVNIYLR 334 (948)
Q Consensus 294 L~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVr-aiN~yLd 334 (948)
+...+..+.+.+.++| +++++..|+.+|++++. .+|-|+.
T Consensus 816 ILs~l~~li~~v~~~m-e~Y~f~~A~~~i~~Fi~~lsnwYIe 856 (1205)
T PTZ00427 816 IFSSVQSLTKSVHTEM-KAYKLYNVLPKLLQFIENLTNWYIR 856 (1205)
T ss_pred HHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHhccHHHH
Confidence 3456678899999999 89999999999999997 5577776
No 91
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.85 E-value=0.0024 Score=79.87 Aligned_cols=39 Identities=21% Similarity=0.367 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH-HHH-Hhhhc
Q psy6851 295 STRFIQTKNNVHAALCDNMDTRSALDSIRDCI-SQV-NIYLR 334 (948)
Q Consensus 295 ~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLV-rai-N~yLd 334 (948)
...+..+...+.+|| +++++.+++..|.+++ ... |=|++
T Consensus 689 l~rl~~l~~~v~eay-e~y~f~~v~~~l~~F~~~dLS~~Yld 729 (933)
T COG0060 689 LSRLNSLVKEVREAY-ENYDFHKVVRALMNFVSEDLSNWYLD 729 (933)
T ss_pred HHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhhhhHHHHH
Confidence 456778899999999 8999999999999999 333 44553
No 92
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=96.82 E-value=0.00077 Score=77.50 Aligned_cols=59 Identities=15% Similarity=0.046 Sum_probs=51.0
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCeeeccc--ccHHHHHHHHhCcccCCC-cccCCcccccCCCC
Q psy6851 627 LPKHWEAEFHKDMADLNVLPPTVLTRVS--EYIPEIVASAQTPKPAAA-KKAESSSDDDSSSE 686 (948)
Q Consensus 627 ~~~~~~~~f~~dm~~L~v~~p~~~~rvs--e~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvsse 686 (948)
++..|.+.|.+.+++|||.. |.+.|+| +|...+.++.++|.++|+ |+.+...+|+++.+
T Consensus 66 ~~~~~~~~~~~~~~~~~I~~-D~F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e 127 (391)
T PF09334_consen 66 FCDKYSAKFKELLEALNISY-DRFIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCE 127 (391)
T ss_dssp HHHHHHHHHHHHHHHTT----SEEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHHcCCCC-cceeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcC
Confidence 56789999999999999986 8999988 588889999999999999 99988999999885
No 93
>PLN02563 aminoacyl-tRNA ligase
Probab=96.65 E-value=0.0038 Score=79.18 Aligned_cols=37 Identities=5% Similarity=0.070 Sum_probs=31.1
Q ss_pred HhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHh
Q psy6851 294 LSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNI 331 (948)
Q Consensus 294 L~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~ 331 (948)
+...+..+...+.++| +++++..|+++|++++...+.
T Consensus 806 ll~kl~~~ikkVte~~-e~y~FntAi~~lmef~n~l~~ 842 (963)
T PLN02563 806 QLRLLHKCIAKVTEEI-ESTRFNTAISAMMEFTNAAYK 842 (963)
T ss_pred HHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhC
Confidence 3445667888999999 799999999999999988764
No 94
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.64 E-value=0.0077 Score=74.93 Aligned_cols=115 Identities=20% Similarity=0.238 Sum_probs=70.2
Q ss_pred cCccccccccccCCc----------cccccccccEEE-------cccchhhcchhHHHHHH-----------HHHH-HHH
Q psy6851 219 TRETGICRQDELFPY----------TEFKDKYGKVRV-------HLSQKQQSLKLVVIMKE-----------FFLN-VKD 269 (948)
Q Consensus 219 ~~dih~GG~DL~FPH----------HEne~h~G~l~i-------~geKMSKSLGN~vti~e-----------f~l~-ls~ 269 (948)
+++.-..|.|-+|=- +.++.-+..|.| +|+|||||+||+|-.-+ |++. +.+
T Consensus 478 Pt~llvtG~DIIffWvarmi~~~~~~~~~~PFk~V~ihGLVrDe~G~KMSKS~GNvIDP~d~I~~yGaDAlRf~la~~~~ 557 (877)
T COG0525 478 PTDLLVTGHDIIFFWVARMIMRGLHLTGEVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDVIDKYGADALRFTLASLAS 557 (877)
T ss_pred CCccccccchhhHHHHHHHHHHHHHhcCCCCccEEEEeeeEEcCCCCCCcccCCCcCCHHHHHHHhChHHHHHHHHhccC
Confidence 345566778888753 333333444554 46999999999974332 2221 222
Q ss_pred HHhhcCCChhhhHHHHhhH----------------------------HHhHHHhHHHHHHHHHHHHHHhhcCChHHHHHH
Q psy6851 270 HIRNLKFPATTVSSFEKWT----------------------------QADLELSTRFIQTKNNVHAALCDNMDTRSALDS 321 (948)
Q Consensus 270 hyR~l~~s~~~l~~~~r~~----------------------------~ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaa 321 (948)
+=|.++|+.+.+.+..++. ..+.=+...+.++...+.++| |++++..|..+
T Consensus 558 ~G~Di~~~~~~~~~~rnF~nKlWNa~Rfv~~~~~~~~~~~~~~~~~~~~drWIls~l~~~v~~v~~~l-d~y~f~~a~~~ 636 (877)
T COG0525 558 PGRDINFDEKRVEGYRNFLNKLWNATRFVLMNLDDLGPDDLDLLALSLADRWILSRLNETVKEVTEAL-DNYRFDEAARA 636 (877)
T ss_pred CCcccCcCHHHHHHHHHHHHHHHhHHHHHHhcccccCcccccccccchHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHH
Confidence 2233566655443221111 112223456778889999999 78999999999
Q ss_pred HHHHHH--HHHhhhc
Q psy6851 322 IRDCIS--QVNIYLR 334 (948)
Q Consensus 322 LfeLVr--aiN~yLd 334 (948)
|.+++= .++-||+
T Consensus 637 ly~F~W~~fcD~YlE 651 (877)
T COG0525 637 LYEFIWNDFCDWYLE 651 (877)
T ss_pred HHHHhHHHHHHHHHH
Confidence 999884 4556765
No 95
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=96.58 E-value=0.0016 Score=77.30 Aligned_cols=27 Identities=11% Similarity=0.065 Sum_probs=24.0
Q ss_pred cccccEEEc-ccchhhcchhHHHHHHHH
Q psy6851 238 DKYGKVRVH-LSQKQQSLKLVVIMKEFF 264 (948)
Q Consensus 238 ~h~G~l~i~-geKMSKSLGN~vti~ef~ 264 (948)
+++|++.+. |+|||||+||++++.+++
T Consensus 268 ~~y~~v~~~~G~KMSKSkGN~i~~~d~l 295 (510)
T PRK00750 268 FVYELFLDKKGEKISKSKGNVITIEDWL 295 (510)
T ss_pred eeeeeEEeCCCCcccccCCCccCHHHHH
Confidence 678999998 999999999999998854
No 96
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=96.51 E-value=0.002 Score=80.40 Aligned_cols=59 Identities=14% Similarity=-0.055 Sum_probs=49.3
Q ss_pred cHHHHHHHHHHHHhhcCCCCCC----eeecccccHHHHHHHHhCcccCCC-cccCCcccccCCCC
Q psy6851 627 LPKHWEAEFHKDMADLNVLPPT----VLTRVSEYIPEIVASAQTPKPAAA-KKAESSSDDDSSSE 686 (948)
Q Consensus 627 ~~~~~~~~f~~dm~~L~v~~p~----~~~rvse~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvsse 686 (948)
++.+|.+.|.++|++||+.. | +.|---+|...+..+..+|.++|+ |.....|++|..++
T Consensus 99 ~~~~~~~~~~~~~~~lGi~~-Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~ 162 (805)
T PRK00390 99 WTYENIANMKKQLKSLGFSY-DWSREIATCDPEYYKWTQWIFLKLYEKGLAYRKESPVNWCPVDG 162 (805)
T ss_pred HHHHHHHHHHHHHHHhCCcc-cCCCCeecCCHHHHHHHHHHHHHHHHCCCEEEecCEEEecCCcC
Confidence 46789999999999999973 4 333444799999999999999999 99999999997664
No 97
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=96.44 E-value=0.0042 Score=78.07 Aligned_cols=43 Identities=21% Similarity=0.315 Sum_probs=38.7
Q ss_pred CceeecCCCCCCCCCChhHHHHHhccCCCC-------------CCCccccchhhhH
Q psy6851 833 QLDIHTGGVDLKFPHHDNELAQAEGLPTHD-------------QEGKELSKGLAKK 875 (948)
Q Consensus 833 ~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~-------------~~g~kmsKsl~n~ 875 (948)
+.|+|+.|.|++|.|.-.-++.+-++++.. .+|+|||||+||+
T Consensus 478 P~d~~~~G~Dii~fw~~~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~KMSKS~GN~ 533 (861)
T TIGR00422 478 PTDLLVTGYDIIFFWVARMIFRSLALTGQVPFKEVYIHGLVRDEQGRKMSKSLGNV 533 (861)
T ss_pred CcceeecchhhhhHHHHHHHHHHHHhcCCCchheEEEeeEEECCCCCCCCcCCCCC
Confidence 579999999999999999999998887653 3799999999999
No 98
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=96.42 E-value=0.0029 Score=72.03 Aligned_cols=66 Identities=14% Similarity=0.113 Sum_probs=42.6
Q ss_pred CCcCCCCCCCcccCCCCCCCCCCcceeEeeccC-ccccccc-------c-c---cCCccccccccccEEEccc-chhhcc
Q psy6851 188 EVRGYPPWPARIEGLADETPNRLKYHIFFYGTR-ETGICRQ-------D-E---LFPYTEFKDKYGKVRVHLS-QKQQSL 254 (948)
Q Consensus 188 Ep~wespWg~~~~~m~~~~~GRPGWHIEcLG~~-dih~GG~-------D-L---~FPHHEne~h~G~l~i~ge-KMSKSL 254 (948)
...|..-|+.+|. --|=.+|.+|.. ..+||.. + . .-|+| ..+|++.+.|. |||||+
T Consensus 212 KL~Wr~dW~~rW~--------~l~Vd~E~~GkDh~~~ggs~~~~~~i~~~ilg~~~P~~---~~ye~V~l~gg~KMSKSk 280 (353)
T cd00674 212 KLTWRVDWPMRWA--------ILGVDFEPFGKDHASAGGSYDTGKEIAREIFGGEPPVP---VMYEFIGLKGGGKMSSSK 280 (353)
T ss_pred ccCCCCCchhhhh--------hcCCCEEeeCccccccccHHHHHHHHHHHHhCCCCCeE---EEeeeEEeCCCCccCCCC
Confidence 4578888887662 234445666654 2232211 1 1 11544 55689999876 999999
Q ss_pred hhHHHHHHHH
Q psy6851 255 KLVVIMKEFF 264 (948)
Q Consensus 255 GN~vti~ef~ 264 (948)
||+|++.+++
T Consensus 281 GnvI~~~dll 290 (353)
T cd00674 281 GNVITPSDWL 290 (353)
T ss_pred CCcCCHHHHH
Confidence 9999999875
No 99
>PLN02959 aminoacyl-tRNA ligase
Probab=96.41 E-value=0.0018 Score=82.96 Aligned_cols=44 Identities=16% Similarity=0.199 Sum_probs=39.5
Q ss_pred CCceeecCCCCCCCCCChhHHHHHhccCCCC-------------CCCccccchhhhH
Q psy6851 832 PQLDIHTGGVDLKFPHHDNELAQAEGLPTHD-------------QEGKELSKGLAKK 875 (948)
Q Consensus 832 ~~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~-------------~~g~kmsKsl~n~ 875 (948)
-++|++++|.|++|-|.-.-+..+-++++.. .+|+|||||+||+
T Consensus 670 yP~Dl~~sG~Dii~~wl~~~l~~~~al~~~~P~p~~v~v~G~V~~~G~KMSKSkGNv 726 (1084)
T PLN02959 670 YPFDLRVSGKDLIQNHLTFAIYNHTAIWAEEHWPRGFRCNGHLMLNSEKMSKSTGNF 726 (1084)
T ss_pred CCCeEEEecccHHHHHHHHHHHHHHHhcCCCCCCceEEEccEEecCCcCccccCCCc
Confidence 3799999999999999999999998877653 4899999999999
No 100
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=96.37 E-value=0.0035 Score=78.59 Aligned_cols=42 Identities=19% Similarity=0.212 Sum_probs=38.3
Q ss_pred CCcceEEehhHHHHHhhhcCCeEEEecccccchHHHHHHHHhc
Q psy6851 432 EGKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQN 474 (948)
Q Consensus 432 hARTyVsfDilrR~l~~y~gy~v~~v~NiTDiDDKIi~ra~~~ 474 (948)
|+++|+..||+.|+++ ..||+|.|+|...+-.-+|..+|.++
T Consensus 48 H~~~~~~~Dvi~Ry~r-m~G~~V~~~~G~D~~Glpie~~a~~~ 89 (842)
T TIGR00396 48 HVRNYTITDVLSRYYR-MKGYNVLHPMGWDAFGLPAENAAIKR 89 (842)
T ss_pred hhHHHHHHHHHHHHHH-hcCCceeccCCcCCCChHHHHHHHHc
Confidence 9999999999999999 89999999999999988888777554
No 101
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=96.26 E-value=0.007 Score=76.23 Aligned_cols=43 Identities=14% Similarity=0.206 Sum_probs=38.5
Q ss_pred CceeecCCCCCCCCCChhHHHHHhccCCCC-------------CCCccccchhhhH
Q psy6851 833 QLDIHTGGVDLKFPHHDNELAQAEGLPTHD-------------QEGKELSKGLAKK 875 (948)
Q Consensus 833 ~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~-------------~~g~kmsKsl~n~ 875 (948)
+.|+|..|.|++|.|.-.-++++.++++.. .+|+|||||+||+
T Consensus 473 P~d~~~~G~Dii~~W~a~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~KMSKSlGNv 528 (874)
T PRK05729 473 PTSVLVTGFDIIFFWVARMIMMGLHFTGQVPFKDVYIHGLVRDEQGRKMSKSKGNV 528 (874)
T ss_pred CcccccccccccchHHHHHHHHHHHhcCCCchhheEEeeeEECCCCCCcccCCCCC
Confidence 679999999999999999999998876542 5899999999999
No 102
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=96.25 E-value=0.0084 Score=75.89 Aligned_cols=44 Identities=18% Similarity=0.204 Sum_probs=38.1
Q ss_pred CCceeecCCCCCCCCCChhHHHHHhccCCCC-------------CCCccccchhhhH
Q psy6851 832 PQLDIHTGGVDLKFPHHDNELAQAEGLPTHD-------------QEGKELSKGLAKK 875 (948)
Q Consensus 832 ~~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~-------------~~g~kmsKsl~n~ 875 (948)
-+.|+|.+|.|.++-|.-.-+..+.++++.. .+|+|||||+||+
T Consensus 544 ~P~Dl~~~G~Di~r~Wf~~~l~~~~~~~g~~P~k~vl~HG~vld~~G~KMSKSlGNv 600 (912)
T PRK05743 544 YPADLYLEGSDQHRGWFQSSLLTSVATRGKAPYKQVLTHGFTVDGKGRKMSKSLGNV 600 (912)
T ss_pred CCceEEEecccccchHHHHHHHHHHHhcCCCccceeEEeeeEECCCCCCCCCCCCCc
Confidence 4689999999999988888888888877654 4899999999999
No 103
>PLN02610 probable methionyl-tRNA synthetase
Probab=96.24 E-value=0.0052 Score=76.64 Aligned_cols=60 Identities=7% Similarity=-0.084 Sum_probs=53.2
Q ss_pred ccHHHHHHHHHHHHhhcCCCCCCeeeccc--ccHHHHHHHHhCcccCCC-cccCCcccccCCCC
Q psy6851 626 TLPKHWEAEFHKDMADLNVLPPTVLTRVS--EYIPEIVASAQTPKPAAA-KKAESSSDDDSSSE 686 (948)
Q Consensus 626 ~~~~~~~~~f~~dm~~L~v~~p~~~~rvs--e~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvsse 686 (948)
+++.+|.+.|.+++++|||.. |.+.|++ +|..-+..+..+|.++|+ |.....++|+.+++
T Consensus 84 e~~d~~~~~~~~~~~~l~i~~-D~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e 146 (801)
T PLN02610 84 EICDKYHAIHKEVYDWFDISF-DKFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQ 146 (801)
T ss_pred HHHHHHHHHHHHHHHHcCCcc-ccCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCC
Confidence 467789999999999999985 8888888 388999999999999999 99988999999885
No 104
>KOG0437|consensus
Probab=96.08 E-value=0.016 Score=70.21 Aligned_cols=42 Identities=10% Similarity=0.128 Sum_probs=34.6
Q ss_pred ccccccccccCCccccc-----------------cccccEEEcccchhhcchhHHHHHH
Q psy6851 221 ETGICRQDELFPYTEFK-----------------DKYGKVRVHLSQKQQSLKLVVIMKE 262 (948)
Q Consensus 221 dih~GG~DL~FPHHEne-----------------~h~G~l~i~geKMSKSLGN~vti~e 262 (948)
|+-++|-||+=-|-.+. ..+|||.++++|||||.|||.|+.+
T Consensus 665 DlrvsGKDLi~NHLtfflynHvAl~~~k~WPkgiraNGHLmLNsEKMSKSTGNfmTL~q 723 (1080)
T KOG0437|consen 665 DLRVSGKDLIPNHLTFFLYNHVALFPEKKWPKGIRANGHLMLNSEKMSKSTGNFMTLEQ 723 (1080)
T ss_pred eeeeccccccccceeEeeeehhhhcccccCccceeeCceEEecchhhccccCCeeeHHH
Confidence 56679999997675532 3479999999999999999998875
No 105
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=95.94 E-value=0.0027 Score=79.10 Aligned_cols=43 Identities=21% Similarity=0.200 Sum_probs=39.0
Q ss_pred CceeecCCCCCCCCCChhHHHHHhccCCCC-------------CCCccccchhhhH
Q psy6851 833 QLDIHTGGVDLKFPHHDNELAQAEGLPTHD-------------QEGKELSKGLAKK 875 (948)
Q Consensus 833 ~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~-------------~~g~kmsKsl~n~ 875 (948)
+.|+|++|.|++|.|----++|+.++++.. .+|+|||||+||+
T Consensus 486 P~d~~~~G~Di~~~w~~~~l~~~~~~~~~~Pf~~v~~hg~v~~~~G~KMSKS~GN~ 541 (800)
T PRK13208 486 PMDLRPQGHDIIRTWLFYTILRAYLLTGKLPWKNIMISGMVLDPDGKKMSKSKGNV 541 (800)
T ss_pred CceEEEeecchhhhHHHHHHHHHHHhcCCCCcceEEEeeEEECCCCCCCCCCCCCC
Confidence 689999999999999888999999887763 4899999999999
No 106
>PLN02381 valyl-tRNA synthetase
Probab=95.50 E-value=0.026 Score=72.59 Aligned_cols=39 Identities=8% Similarity=0.190 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHHhhcCChHHHHHHHHHH--HHHHHhhhc
Q psy6851 295 STRFIQTKNNVHAALCDNMDTRSALDSIRDC--ISQVNIYLR 334 (948)
Q Consensus 295 ~~~l~el~e~F~aAL~DDFNTP~ALaaLfeL--VraiN~yLd 334 (948)
...+..+...+.++| +++++..|+.+|+++ ...+|.|++
T Consensus 780 LskL~~~i~~v~~~~-e~y~F~~A~~~l~~F~~~dl~d~Yie 820 (1066)
T PLN02381 780 LSVLNKAISKTVSSL-DAYEFSDAASTVYSWWQYQFCDVFIE 820 (1066)
T ss_pred HHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 345667889999999 799999999999998 456677775
No 107
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=94.94 E-value=0.05 Score=69.48 Aligned_cols=42 Identities=21% Similarity=0.259 Sum_probs=33.9
Q ss_pred CCceeecCCCCCCC--CCChhHHHHHhccCCCC-------------CCCccccchhhhH
Q psy6851 832 PQLDIHTGGVDLKF--PHHDNELAQAEGLPTHD-------------QEGKELSKGLAKK 875 (948)
Q Consensus 832 ~~~dih~GG~Dl~F--PHH~ne~aq~e~~~~~~-------------~~g~kmsKsl~n~ 875 (948)
-+.|+|..|.|.++ -|. -+.++-++++.. .+|+|||||+||+
T Consensus 582 ~PaD~~~eG~Di~rgWF~s--~ll~s~~~~~~~P~k~V~~HG~vld~~G~KMSKSlGNv 638 (961)
T PRK13804 582 WPADLYLEGSDQHRGWFNS--SLLESCGTRGRAPYKAVLTHGFTLDEKGEKMSKSLGNT 638 (961)
T ss_pred CCceEEEEEcccccHHHHH--HHHHHHHhcCCCChhhEEEeccEECCCCCCccCCCCCc
Confidence 46899999999996 444 477888776652 4899999999999
No 108
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=94.88 E-value=0.0077 Score=72.88 Aligned_cols=44 Identities=14% Similarity=0.000 Sum_probs=29.4
Q ss_pred ccccccccccCCccccc----------------cccccEEE-cccchhhcchhHHHHHHHH
Q psy6851 221 ETGICRQDELFPYTEFK----------------DKYGKVRV-HLSQKQQSLKLVVIMKEFF 264 (948)
Q Consensus 221 dih~GG~DL~FPHHEne----------------~h~G~l~i-~geKMSKSLGN~vti~ef~ 264 (948)
|.-++|.|+++.|...- ..+|+|.. +|+|||||+||+++..++.
T Consensus 516 D~~~~G~D~~~~W~~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii 576 (601)
T PF00133_consen 516 DLYIEGKDQIRGWFQSSLFLSVALFGKEPFKKVITHGFVLDEDGRKMSKSKGNVIDPEDII 576 (601)
T ss_dssp SEEEEEGGGTTTHHHHHHHHHHHHSSSTSBSEEEEE--EEETTSSB-BTTTTB--BHHHHH
T ss_pred ccccCCccchhhHHHHhHhhccccccCCchheeeecccccccceeecccCCCcccCHHHHH
Confidence 44467899999887531 34688775 7999999999999887764
No 109
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=94.69 E-value=0.013 Score=70.96 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=37.3
Q ss_pred CCceeecCCCCCCCCCChhHHHHHhccCCCC-------------CCCccccchhhhHh
Q psy6851 832 PQLDIHTGGVDLKFPHHDNELAQAEGLPTHD-------------QEGKELSKGLAKKL 876 (948)
Q Consensus 832 ~~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~-------------~~g~kmsKsl~n~l 876 (948)
-++|+-++|.|+++-|.--=+..+-++++.. -+|+|||||+||++
T Consensus 513 ~P~D~~~~G~D~~~~W~~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi 570 (601)
T PF00133_consen 513 YPVDLYIEGKDQIRGWFQSSLFLSVALFGKEPFKKVITHGFVLDEDGRKMSKSKGNVI 570 (601)
T ss_dssp SSBSEEEEEGGGTTTHHHHHHHHHHHHSSSTSBSEEEEE--EEETTSSB-BTTTTB--
T ss_pred CCcccccCCccchhhHHHHhHhhccccccCCchheeeecccccccceeecccCCCccc
Confidence 3799999999999999998888888887764 47999999999994
No 110
>KOG0436|consensus
Probab=94.32 E-value=0.44 Score=55.35 Aligned_cols=61 Identities=11% Similarity=-0.019 Sum_probs=52.5
Q ss_pred ccHHHHHHHHHHHHhhcCCCCCCeeecccc--cHHHHHHHHhCcccCCC-cccCCcccccCCCCC
Q psy6851 626 TLPKHWEAEFHKDMADLNVLPPTVLTRVSE--YIPEIVASAQTPKPAAA-KKAESSSDDDSSSED 687 (948)
Q Consensus 626 ~~~~~~~~~f~~dm~~L~v~~p~~~~rvse--~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvssed 687 (948)
++..+--.+|..-...+||.- |.+.|+|+ |+..+.+|-..+..+|+ |..+-.-+|++|.|.
T Consensus 105 e~cDr~s~~f~qL~k~~gi~y-t~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEt 168 (578)
T KOG0436|consen 105 ELCDRISQSFRQLWKDAGIAY-TKFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDET 168 (578)
T ss_pred HHHhhhhHHHHHHHHHhCcch-hheeecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccc
Confidence 456667778888888999986 89999997 99999999999999999 998777789999864
No 111
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=94.04 E-value=0.0066 Score=59.72 Aligned_cols=42 Identities=17% Similarity=0.144 Sum_probs=32.5
Q ss_pred ceeEe------ecc-C-ccccccccccCCccccc---------------cccccEEEc-ccchhhcc
Q psy6851 212 YHIFF------YGT-R-ETGICRQDELFPYTEFK---------------DKYGKVRVH-LSQKQQSL 254 (948)
Q Consensus 212 WHIEc------LG~-~-dih~GG~DL~FPHHEne---------------~h~G~l~i~-geKMSKSL 254 (948)
||++| ++. . ++++||.|+.+ ||++. +|+|+|... |.|||||+
T Consensus 78 y~~~~~a~~~~~~~~~~~i~~~G~Dq~~-h~~~~~~i~~~~~~~~~p~~~~~~~l~~~~g~KmSks~ 143 (143)
T cd00802 78 YMFLQAADFLLLYETECDIHLGGSDQLG-HIELGLELLKKAGGPARPFGLTFGRVMGADGTKMSKSK 143 (143)
T ss_pred HHHHHHHHHHHHhhCCcEEEEechhHHH-HHHHHHHHHHHhCCCCCceEEEeCCeECCCCCcCCCCC
Confidence 88987 333 2 78999999999 88853 467788874 48999985
No 112
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=94.02 E-value=0.085 Score=67.54 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=27.8
Q ss_pred ccccccccHHHHHHHHHHHHHHcCCeeeeCCcEEEeec
Q psy6851 123 VLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVN 160 (948)
Q Consensus 123 ~~pRvTe~IpeII~~~I~~LI~~G~AYes~GsVYFDv~ 160 (948)
+.|-=-+|+..+. ....+|.++|+.|....-|+++..
T Consensus 150 y~T~d~~y~~~v~-~~F~~l~~kGliyr~~~~v~wcp~ 186 (975)
T PRK06039 150 YKTLDNEYMESVW-WALKQLYDKGLLYKGYRVVPYCPR 186 (975)
T ss_pred cCcCCHHHHHHHH-HHHHHHHHCCCEEecceeeeecCC
Confidence 4444466777777 577889999999988777888765
No 113
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.67 E-value=1 Score=54.86 Aligned_cols=67 Identities=13% Similarity=0.247 Sum_probs=48.2
Q ss_pred HHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcCC-----CC-------HHHHHHHHHHHHHHHhHccccc
Q psy6851 293 ELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGT-----PN-------QLLLRDIGAYVTKILTVFGCIG 360 (948)
Q Consensus 293 eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~~-----~~-------~~lL~~i~~~V~~mL~VLGL~~ 360 (948)
+|...+..++.-+..|. +++..+.-..-|.+|+...|++-+.. .+ ..++..+...+..-|.+|||..
T Consensus 495 ~L~~~L~~fp~vl~~aa-~~~~Ph~la~YL~~LA~~Fn~fY~~~~Vl~~~~~~~~~aRL~L~~a~~~vL~ngL~LLGI~~ 573 (577)
T COG0018 495 ELVKKLLEFPEVLEEAA-EELEPHRLANYLYDLAGSFNSFYNACPVLGAENEELRAARLALVKATRQVLKNGLDLLGIEA 573 (577)
T ss_pred HHHHHHHHhHHHHHHHH-HhcCchHHHHHHHHHHHHHHHHHhhCCcCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34455667777777887 88999999999999999999865432 11 2244455566777899999854
No 114
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=93.54 E-value=0.047 Score=62.44 Aligned_cols=46 Identities=17% Similarity=0.271 Sum_probs=38.3
Q ss_pred ccCCCCCCeeeec----CCcceEEehhHHHHHhhhcCCeEEEecccccchH
Q psy6851 419 EVLPNVGVRLEDI----EGKSYITFDILRRILSEYFNYNITYAMNITDIDD 465 (948)
Q Consensus 419 eflP~~G~~V~D~----hARTyVsfDilrR~l~~y~gy~v~~v~NiTDiDD 465 (948)
.++-..|+.+... |+|.++.+|+++|+|+ ..||+|.||....|.|+
T Consensus 20 ~~~v~tgi~psG~~HIG~~~e~i~~D~i~R~lr-~~G~~v~~v~~~Dd~d~ 69 (353)
T cd00674 20 KYVVASGISPSGHIHIGNFREVITADLVARALR-DLGFEVRLIYSWDDYDR 69 (353)
T ss_pred eEEEecCCCCCCCcccCccHHHHHHHHHHHHHH-HcCCCEEEEEEEcCCCc
Confidence 3444556665543 8999999999999999 78999999999999987
No 115
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=93.26 E-value=0.037 Score=69.78 Aligned_cols=38 Identities=18% Similarity=0.196 Sum_probs=30.1
Q ss_pred CccccccccHHHHHHHHHHHHHHcCCeeeeCCcEEEeec
Q psy6851 122 TVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVN 160 (948)
Q Consensus 122 ~~~pRvTe~IpeII~~~I~~LI~~G~AYes~GsVYFDv~ 160 (948)
.+.|---+|...+. ....+|.++|+.|...--||++..
T Consensus 144 ~y~T~~p~y~~~~~-~~f~~l~~~gliyr~~~~v~w~p~ 181 (861)
T TIGR00392 144 PYKTMDPSYEESQW-WLFKEAHEKGLLYRGLKPVYWSPR 181 (861)
T ss_pred CcCcCCHHHHHHHH-HHHHHHHHCCCEeecceeeecCCC
Confidence 34444466777777 688899999999998888999875
No 116
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=93.10 E-value=0.11 Score=67.05 Aligned_cols=43 Identities=14% Similarity=0.143 Sum_probs=30.5
Q ss_pred CceeecCCCCCCCCCChhHHHHHhccCCCC-------------CCCccccchhhhH
Q psy6851 833 QLDIHTGGVDLKFPHHDNELAQAEGLPTHD-------------QEGKELSKGLAKK 875 (948)
Q Consensus 833 ~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~-------------~~g~kmsKsl~n~ 875 (948)
+.|+|.+|.|.+|=|---=++.+-.+++.- -+|+|||||+||+
T Consensus 491 P~d~~~~G~Dii~~W~a~~l~~~~~~~~~~Pfk~V~~hG~v~d~~G~KMSKSkGNv 546 (1052)
T PRK14900 491 PTSVMETGHDIIFFWVARMMMMGLHFMGEVPFRTVYLHPMVRDEKGQKMSKTKGNV 546 (1052)
T ss_pred CchhhcccccHHhHHHHHHHHHHHHhcCCCccceeEecccEECCCCCCccCCCCCC
Confidence 468899999988765555555554333221 3899999999999
No 117
>PLN02286 arginine-tRNA ligase
Probab=93.07 E-value=1.1 Score=54.44 Aligned_cols=67 Identities=12% Similarity=0.157 Sum_probs=47.5
Q ss_pred HHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcCC-----C----CHHHHHHHHHHHHHHHhHccccc
Q psy6851 293 ELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGT-----P----NQLLLRDIGAYVTKILTVFGCIG 360 (948)
Q Consensus 293 eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~~-----~----~~~lL~~i~~~V~~mL~VLGL~~ 360 (948)
.|...+..+++.+..|. +++..+.-..-|++|++..|++-+.. . ...++..+...+..-|.+|||..
T Consensus 497 ~L~~~l~~fp~vv~~a~-~~~~P~~l~~Yl~~LA~~F~~fY~~~~Vl~~~~~~aRL~L~~a~~~vL~~gL~LLGI~~ 572 (576)
T PLN02286 497 ALGLHLLQFPEVVEEAC-TDLLPNRLCEYLYNLSEKFTKFYSNCKVNGSEEETSRLLLCEATAIVMRKCFHLLGITP 572 (576)
T ss_pred HHHHHHHHHHHHHHHHH-HhcCchHHHHHHHHHHHHHHHHHhcCccCCCCchhHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 34455667777777777 88999999999999999999866421 1 12244455566777788999854
No 118
>KOG0432|consensus
Probab=92.40 E-value=0.5 Score=58.96 Aligned_cols=39 Identities=15% Similarity=0.268 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH--HHHhhhc
Q psy6851 295 STRFIQTKNNVHAALCDNMDTRSALDSIRDCIS--QVNIYLR 334 (948)
Q Consensus 295 ~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVr--aiN~yLd 334 (948)
...+..+.+.+...| +.+|+..|..+++.+.- -+..|++
T Consensus 719 lsrL~~av~~~~~~~-~~~~f~~at~a~~~Fwl~~lCDVYlE 759 (995)
T KOG0432|consen 719 LSRLAEAVEEVNESL-EARNFHLATSALYAFWLYDLCDVYLE 759 (995)
T ss_pred HHHHHHHHHHHHhhh-hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788899999 88999999999988762 3455665
No 119
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=92.29 E-value=0.18 Score=55.02 Aligned_cols=41 Identities=27% Similarity=0.165 Sum_probs=35.8
Q ss_pred HHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeee
Q psy6851 108 TDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYE 150 (948)
Q Consensus 108 ~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYe 150 (948)
.+.+.++|+ |+ +|+..++.|+|++.+. +++++|+++|+||.
T Consensus 55 ~~~i~~dL~wLGl-~~d~~~~qS~r~~~y~-~~~~~Li~~G~aY~ 97 (240)
T cd09287 55 YDMIPEDLEWLGV-KWDEVVIASDRIELYY-EYARKLIEMGGAYV 97 (240)
T ss_pred HHHHHHHHHHcCC-CCCCccchhccHHHHH-HHHHHHHHcCCccc
Confidence 334666666 99 8899999999999999 79999999999997
No 120
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=91.85 E-value=0.25 Score=61.93 Aligned_cols=43 Identities=21% Similarity=0.217 Sum_probs=29.8
Q ss_pred CceeecCCCCCCCCCChhHHHHHhccCCCC------------------C-CCccccchhhhH
Q psy6851 833 QLDIHTGGVDLKFPHHDNELAQAEGLPTHD------------------Q-EGKELSKGLAKK 875 (948)
Q Consensus 833 ~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~------------------~-~g~kmsKsl~n~ 875 (948)
++|+-.||+||+==|---=+=-..+++... . +|+|||||+||+
T Consensus 526 PVD~yigG~ehavlHLly~rF~Hkal~d~g~~p~~epf~~L~~qGmVl~~~g~KMSKSKgN~ 587 (814)
T COG0495 526 PVDLYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDEPFKKLITQGMVLGEEGEKMSKSKGNV 587 (814)
T ss_pred ChheeecchhHHHHHHHHHHHHHHHhcccCcCCCccchhhhhccceEEecCCCccccccCCC
Confidence 699999999987665443333333333221 3 689999999999
No 121
>PLN02882 aminoacyl-tRNA ligase
Probab=91.60 E-value=0.27 Score=64.07 Aligned_cols=59 Identities=7% Similarity=0.142 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHhc--CCC---CCCccccccccHHHHHHHHHHHHHHcCCeeeeCCcEEEeecc
Q psy6851 102 EMFKMETDKYSQFDE--TVL---PPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNA 161 (948)
Q Consensus 102 el~~~~~~~f~~dm~--nV~---~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~ 161 (948)
++..++.+.+.+.+. |+. ...+.|---+|+.-+. ....+|.++|+.|....-|+|+..-
T Consensus 121 ~~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~-~~f~~l~~kGliyr~~~~v~wcp~~ 184 (1159)
T PLN02882 121 SIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVW-WVFKQLFEKGLVYKGFKVMPYSTAC 184 (1159)
T ss_pred HHHHHHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHH-HHHHHHHHCCCEEecceeEeecCCC
Confidence 344455555554443 421 2345566678888888 7999999999999988889998753
No 122
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=91.35 E-value=0.16 Score=61.20 Aligned_cols=45 Identities=13% Similarity=-0.048 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cc
Q psy6851 629 KHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KK 674 (948)
Q Consensus 629 ~~~~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~ 674 (948)
..|++.+++||+.|||. |+.++++|+|++.+.+++++|+++|+ |.
T Consensus 142 ~e~~~~I~edL~wLGi~-~d~~~~qSd~~~~y~~~a~~Li~~G~AY~ 187 (560)
T TIGR00463 142 PEAYDMILEDLDWLGVK-GDEVVYQSDRIEEYYDYCRKLIEMGKAYV 187 (560)
T ss_pred HHHHHHHHHHHHHcCCC-CCccccccccHHHHHHHHHHHHHcCCcee
Confidence 46999999999999999 69999999999999999999999999 85
No 123
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=90.77 E-value=0.3 Score=59.06 Aligned_cols=44 Identities=25% Similarity=0.181 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeee
Q psy6851 105 KMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYE 150 (948)
Q Consensus 105 ~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYe 150 (948)
..+.+++.+++. |+. |+.++++|+|++.+. +++++||++|+||.
T Consensus 142 ~e~~~~I~edL~wLGi~-~d~~~~qSd~~~~y~-~~a~~Li~~G~AY~ 187 (560)
T TIGR00463 142 PEAYDMILEDLDWLGVK-GDEVVYQSDRIEEYY-DYCRKLIEMGKAYV 187 (560)
T ss_pred HHHHHHHHHHHHHcCCC-CCccccccccHHHHH-HHHHHHHHcCCcee
Confidence 346777777777 997 799999999999999 79999999999996
No 124
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=90.46 E-value=0.18 Score=60.46 Aligned_cols=44 Identities=16% Similarity=0.114 Sum_probs=31.7
Q ss_pred cCCCCCCeeeec----CCcceEEehhHHHHHhhhcCCeEEEecccccch
Q psy6851 420 VLPNVGVRLEDI----EGKSYITFDILRRILSEYFNYNITYAMNITDID 464 (948)
Q Consensus 420 flP~~G~~V~D~----hARTyVsfDilrR~l~~y~gy~v~~v~NiTDiD 464 (948)
++-..|+.+... |.|.++..|+++|.|+ ..|++|.||----|-|
T Consensus 20 ~~~~tg~~psG~~HiG~~~e~~~~d~v~r~~r-~~g~~~~~i~~~Dd~D 67 (515)
T TIGR00467 20 YTVASGITPSGHIHIGNFREVITADAIARALR-DSGSEARFIYIADNYD 67 (515)
T ss_pred EEEecCCCCCCCccccchhhhhHHHHHHHHHH-HcCCCEEEEEEEcCCc
Confidence 333455554432 8999999999999999 6899999975443333
No 125
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=90.07 E-value=0.5 Score=61.87 Aligned_cols=43 Identities=23% Similarity=0.199 Sum_probs=37.8
Q ss_pred CceeecCCCCCCCCCChhHHHHHhccCCCC-------------CCCccccchhhhH
Q psy6851 833 QLDIHTGGVDLKFPHHDNELAQAEGLPTHD-------------QEGKELSKGLAKK 875 (948)
Q Consensus 833 ~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~-------------~~g~kmsKsl~n~ 875 (948)
+.|+-+=|.|.+|=|=--=+..+-++++.. -+|+|||||+||+
T Consensus 673 PaD~i~eG~Dq~rgWf~s~l~~s~~l~~~~PfK~VlvHG~Vld~dG~KMSKSlGNv 728 (1205)
T PTZ00427 673 PADFIAEGLDQTRGWFYTLLVISTLLFDKAPFKNLICNGLVLASDGKKMSKRLKNY 728 (1205)
T ss_pred CceEEEEecchhccHHHHHHHHHHHhcCCCCcceeEEccEEEcCCCCCcccCCCCC
Confidence 689999999999999888888888888765 3899999999998
No 126
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=89.85 E-value=0.19 Score=59.64 Aligned_cols=72 Identities=18% Similarity=0.244 Sum_probs=41.9
Q ss_pred CCCCcCCCCCCCcccCCCCCCCCCCcceeEeeccCcccccc--------ccccCCccccc-cccccEEEcc-cchhhcch
Q psy6851 186 EGEVRGYPPWPARIEGLADETPNRLKYHIFFYGTRETGICR--------QDELFPYTEFK-DKYGKVRVHL-SQKQQSLK 255 (948)
Q Consensus 186 ~gEp~wespWg~~~~~m~~~~~GRPGWHIEcLG~~dih~GG--------~DL~FPHHEne-~h~G~l~i~g-eKMSKSLG 255 (948)
.|...|..-|+.+|... |=-.|-+|..+..-|| ...+|=+---+ ..+-++.+.| .|||||.|
T Consensus 212 ~~KL~WRvdWp~RW~~l--------gVd~EPfGKDH~a~ggSydtg~~I~~ei~g~~pP~~~~YE~i~lkg~~~mSsSkG 283 (521)
T COG1384 212 EGKLPWRVDWPMRWAAL--------GVDFEPFGKDHAAAGGSYDTGKRIAREIFGYEPPVPFVYEWILLKGGGKMSSSKG 283 (521)
T ss_pred CcccccCcCccchhhcc--------CcccccCCcccccccCchHHHHHHHHHhcCCCCCCCCceEEEEecCCcccccCCC
Confidence 45567999999776322 2223446654221111 12222211111 2345778887 99999999
Q ss_pred hHHHHHHHHH
Q psy6851 256 LVVIMKEFFL 265 (948)
Q Consensus 256 N~vti~ef~l 265 (948)
|+|+++|.+.
T Consensus 284 ~~i~~~dwle 293 (521)
T COG1384 284 NVISLSDWLE 293 (521)
T ss_pred cEEcHHHHHH
Confidence 9999999863
No 127
>PLN02563 aminoacyl-tRNA ligase
Probab=88.76 E-value=0.36 Score=61.84 Aligned_cols=59 Identities=14% Similarity=-0.050 Sum_probs=47.8
Q ss_pred cHHHHHHHHHHHHhhcCCCCC---CeeecccccHHHHHHHHhCcccCCC-cccCCcccccCCC
Q psy6851 627 LPKHWEAEFHKDMADLNVLPP---TVLTRVSEYIPEIVASAQTPKPAAA-KKAESSSDDDSSS 685 (948)
Q Consensus 627 ~~~~~~~~f~~dm~~L~v~~p---~~~~rvse~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvss 685 (948)
.+..+.+.|.+.|++||+.-- .+.|--.+|..-+..+..+|.++|+ |+....|++|..+
T Consensus 178 ~~~~~i~~~~~q~~~lG~s~DW~r~~~T~dp~y~~~~q~~F~~L~~~GliY~~~~~v~wcp~~ 240 (963)
T PLN02563 178 TTLKNIARFRSQLKSLGFSYDWDREISTTEPEYYKWTQWIFLQLLKRGLAYQAEVPVNWCPAL 240 (963)
T ss_pred hHHHHHHHHHHHHHHhCcEeeCCCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeecCCc
Confidence 356899999999999998653 2344344688889999999999999 9999899998665
No 128
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=88.27 E-value=0.65 Score=59.02 Aligned_cols=40 Identities=15% Similarity=0.146 Sum_probs=33.9
Q ss_pred CccccccccHHHHHHHHHHHHHHcCCeeeeCCcEEEeeccC
Q psy6851 122 TVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAF 162 (948)
Q Consensus 122 ~~~pRvTe~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~f 162 (948)
.+.|-=-+|+..++ ....++.++|+.|...--||+..+.=
T Consensus 156 pY~Tmd~~ye~~~~-~~f~~~~~kGllyrg~Kpv~wsp~c~ 195 (933)
T COG0060 156 PYKTMDPSYEESVW-WAFKELYEKGLLYRGYKPVPWSPRCE 195 (933)
T ss_pred CeecCCHHHHHHHH-HHHHHHHHCCCeecCCeeeeecCCCC
Confidence 45666678999999 79999999999999877899987643
No 129
>KOG0433|consensus
Probab=88.14 E-value=2.6 Score=52.18 Aligned_cols=50 Identities=20% Similarity=0.420 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCCCC---CCccccccccHHHHHHHHHHHHHHcCCeeeeCCcEEEee
Q psy6851 107 ETDKYSQFDETVLP---PTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNV 159 (948)
Q Consensus 107 ~~~~f~~dm~nV~~---P~~~pRvTe~IpeII~~~I~~LI~~G~AYes~GsVYFDv 159 (948)
...+|..+ ||.. --++|---+|+-..+ +...+|.++|+-|.+.-=||...
T Consensus 144 Q~e~F~r~--gv~aDW~n~Y~T~~~~ye~aQL-~iF~~lyekgLvyR~~KPVyWSp 196 (937)
T KOG0433|consen 144 QMEAFRRW--GVTADWENPYVTKSPSYEAAQL-DIFAKLYEKGLVYRSFKPVYWSP 196 (937)
T ss_pred HHHHHHHh--eeeccCCCceeecChHHHHHHH-HHHHHHHhccceeccCCcceecC
Confidence 34466655 6544 235666678888888 69999999999996544455443
No 130
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=87.54 E-value=3 Score=38.64 Aligned_cols=45 Identities=16% Similarity=0.329 Sum_probs=38.8
Q ss_pred hHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcCC
Q psy6851 291 DLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGT 336 (948)
Q Consensus 291 d~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~~ 336 (948)
+..+...+.++..++..+| +++++..|+..|+++++.+|+|+...
T Consensus 40 d~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~i~~~~~~~n~~~~~~ 84 (117)
T cd07958 40 DKELRRKLHKTIKKVTEDI-ERLRFNTAIAALMELVNALYKYKKKD 84 (117)
T ss_pred hHHHHHHHHHHHHHHHHHH-hCCcchHHHHHHHHHHHHHHHhhccc
Confidence 4455666778889999999 78999999999999999999998754
No 131
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=85.35 E-value=3.7 Score=38.68 Aligned_cols=45 Identities=27% Similarity=0.355 Sum_probs=38.5
Q ss_pred hHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcCC
Q psy6851 291 DLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGT 336 (948)
Q Consensus 291 d~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~~ 336 (948)
+..+...+.++..++..+| ++|++..|+..++++++.+|.|++..
T Consensus 38 d~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~n~y~~~~ 82 (129)
T cd07957 38 DEELLEEAEELLEEVAEAM-EELEFRKALEEIMELARAANKYIDET 82 (129)
T ss_pred cHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHhhhccC
Confidence 4445566777889999999 79999999999999999999999743
No 132
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=85.26 E-value=0.51 Score=56.55 Aligned_cols=49 Identities=27% Similarity=0.248 Sum_probs=35.1
Q ss_pred HHHhhcCCCceeecCCCCCCCCCChhHHHHHh-ccCCCC----------CC-CccccchhhhH
Q psy6851 825 MASAVLGPQLDIHTGGVDLKFPHHDNELAQAE-GLPTHD----------QE-GKELSKGLAKK 875 (948)
Q Consensus 825 m~~~~lg~~~dih~GG~Dl~FPHH~ne~aq~e-~~~~~~----------~~-g~kmsKsl~n~ 875 (948)
|=-.+|| +|+=-+|.|+.-|++.-=.+.++ .+.... .+ |+|||||+||+
T Consensus 228 ~rW~~l~--Vd~e~~GkDh~~~s~~~~~~i~~~ilg~~~P~~~~y~~v~~~~G~KMSKSkGN~ 288 (510)
T PRK00750 228 MRWAALG--VDFEPFGKDHASASYDTSKKIAREILGGEPPEPFVYELFLDKKGEKISKSKGNV 288 (510)
T ss_pred HHHHHcC--CCEEeeCcccCcchHHHHHHHHHHHcCCCCCeeeeeeeEEeCCCCcccccCCCc
Confidence 5556675 66777899999987776666666 433222 44 99999999998
No 133
>KOG0437|consensus
Probab=84.97 E-value=0.28 Score=60.08 Aligned_cols=43 Identities=23% Similarity=0.238 Sum_probs=31.5
Q ss_pred CceeecCCCCCCCCCCh----hHHHHHhc-c-------CCCC-CCCccccchhhhH
Q psy6851 833 QLDIHTGGVDLKFPHHD----NELAQAEG-L-------PTHD-QEGKELSKGLAKK 875 (948)
Q Consensus 833 ~~dih~GG~Dl~FPHH~----ne~aq~e~-~-------~~~~-~~g~kmsKsl~n~ 875 (948)
+||+-.+|-||+=-|-. |-.|-... . .||- .+++|||||.|||
T Consensus 663 PiDlrvsGKDLi~NHLtfflynHvAl~~~k~WPkgiraNGHLmLNsEKMSKSTGNf 718 (1080)
T KOG0437|consen 663 PIDLRVSGKDLIPNHLTFFLYNHVALFPEKKWPKGIRANGHLMLNSEKMSKSTGNF 718 (1080)
T ss_pred ceeeeeccccccccceeEeeeehhhhcccccCccceeeCceEEecchhhccccCCe
Confidence 69999999999977765 44444331 1 1221 7999999999999
No 134
>KOG0435|consensus
Probab=83.17 E-value=3.1 Score=51.18 Aligned_cols=87 Identities=10% Similarity=0.138 Sum_probs=54.0
Q ss_pred ccchhhcchhHHHHHHH-----------HHHHHHHHhh-cCCChhhhHHHHhhHHHh-----------------------
Q psy6851 247 LSQKQQSLKLVVIMKEF-----------FLNVKDHIRN-LKFPATTVSSFEKWTQAD----------------------- 291 (948)
Q Consensus 247 geKMSKSLGN~vti~ef-----------~l~ls~hyR~-l~~s~~~l~~~~r~~~ad----------------------- 291 (948)
-+|||||.+|.+--.+. +.+..+..|. ++|++..+.+..||.+.-
T Consensus 615 ~eKMSKSK~NGVdP~~~v~~yG~D~tRl~ilf~ap~~~~~nW~es~i~Gi~rwl~riw~l~~~~~~ar~~g~~~d~~~~t 694 (876)
T KOG0435|consen 615 YEKMSKSKHNGVDPADVVLEYGVDTTRLYILFAAPPRDPINWNESAIPGIKRWLQRIWALVSQILQARDDGKAKDLKKLT 694 (876)
T ss_pred HHHhhhcccCCCCHHHHHHHhCchHHHHHHHhhCCcccccccccccchhHHHHHHHHHHHHHHHHHHHhcCCcccccccc
Confidence 47999999998754443 3334555666 788877666555554321
Q ss_pred -------HHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhh
Q psy6851 292 -------LELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYL 333 (948)
Q Consensus 292 -------~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yL 333 (948)
..+......+...+.+.+..+|..-.||+.++.|.+..-+..
T Consensus 695 d~~dae~~kl~~~~n~fi~~vt~~~e~~~slNtaIS~~m~ltN~l~~a~ 743 (876)
T KOG0435|consen 695 DGFDAETRKLKETYNFFIKQVTEHYEVLFSLNTAISDMMGLTNALKKAL 743 (876)
T ss_pred cccchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 011222334455666777777777788888888877554443
No 135
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=81.57 E-value=4.6 Score=36.94 Aligned_cols=44 Identities=25% Similarity=0.381 Sum_probs=38.7
Q ss_pred hHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcC
Q psy6851 291 DLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRG 335 (948)
Q Consensus 291 d~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~ 335 (948)
+..+...+..+...+..+| +++.+..|+..+++++..+|.|++.
T Consensus 41 d~~l~~~~~~~~~~~~~~~-e~~~~~~a~~~i~~~~~~~n~y~~~ 84 (117)
T cd07375 41 DRELLARLQEFIKRTTNAL-EALDPTTAVQELFKFTNELNWYLDE 84 (117)
T ss_pred hHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhccHHHHH
Confidence 4556677778899999999 7999999999999999999999873
No 136
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=81.20 E-value=3.4 Score=50.18 Aligned_cols=59 Identities=12% Similarity=-0.067 Sum_probs=43.1
Q ss_pred cccHHHHHHHHHHHHhhcCCCCCCeee--cccccHHHHHHHHhCcccCCC-cccCCcccccCCC
Q psy6851 625 ATLPKHWEAEFHKDMADLNVLPPTVLT--RVSEYIPEIVASAQTPKPAAA-KKAESSSDDDSSS 685 (948)
Q Consensus 625 ~~~~~~~~~~f~~dm~~L~v~~p~~~~--rvse~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvss 685 (948)
+.+.....+.|.+++++|||.- |.+. .-+-+-+.+-..++.|.++|+ |.. |.++++++.
T Consensus 231 ~~~~~~~l~~~~~~~~~l~V~f-D~~~~E~e~~~~~~~~~v~~~L~~~g~~~~~-Ga~~~~~~~ 292 (566)
T TIGR00456 231 KRLVEYSLEGIKETLARLNIHF-DSFVWEGESVKNGMVPKVLEDLKEKGLVVED-GALWLDLTL 292 (566)
T ss_pred HHHHHHHHHHHHHHHHHcCCce-eeeeccccccccccHHHHHHHHHHCCCEEEc-CCEEEEccc
Confidence 4556677899999999999986 6555 323344445566677889999 876 888887754
No 137
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=80.62 E-value=3 Score=52.90 Aligned_cols=62 Identities=19% Similarity=0.294 Sum_probs=39.3
Q ss_pred CCCCCCchhHHHHHHHHhhcCCCceeecCCCCCCCCCChhHHHHHhccCCCC-------------CCCccccchhhhH
Q psy6851 811 WGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLPTHD-------------QEGKELSKGLAKK 875 (948)
Q Consensus 811 wg~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~-------------~~g~kmsKsl~n~ 875 (948)
|...--||.=+ +....+++ +.|.=.-|-|.+|==---=|.++-.+++.. -+|+|||||+||+
T Consensus 459 wPfstlgWp~~-t~~l~~fy--Pt~llvtG~DIIffWvarmi~~~~~~~~~~PFk~V~ihGLVrDe~G~KMSKS~GNv 533 (877)
T COG0525 459 WPFSTLGWPEE-TPDLKKFY--PTDLLVTGHDIIFFWVARMIMRGLHLTGEVPFKDVYIHGLVRDEQGRKMSKSKGNV 533 (877)
T ss_pred ccccccCCCCc-chHHHhcC--CCccccccchhhHHHHHHHHHHHHHhcCCCCccEEEEeeeEEcCCCCCCcccCCCc
Confidence 55555666655 33333333 445555677777765555555666555532 5899999999999
No 138
>KOG0432|consensus
Probab=80.31 E-value=0.8 Score=57.30 Aligned_cols=56 Identities=20% Similarity=0.475 Sum_probs=38.8
Q ss_pred hhhhhhcccccccCCCCCCeee--ecCCcceEEehhHHHHHhhhcCCeEEEecccccchHHHH
Q psy6851 408 EILNQCDRLRDEVLPNVGVRLE--DIEGKSYITFDILRRILSEYFNYNITYAMNITDIDDKII 468 (948)
Q Consensus 408 KLyNSldr~ReeflP~~G~~V~--D~hARTyVsfDilrR~l~~y~gy~v~~v~NiTDiDDKIi 468 (948)
++-|=|...+.-+ ..+.|. |.+.||+++.+...+-.+ ||.=..|.-++.+=|+.|+
T Consensus 213 rlVNW~~~L~sai---SdiEVe~~ei~~~t~l~vpGyd~~Ve--FG~L~~faY~v~gs~~~i~ 270 (995)
T KOG0432|consen 213 RLVNWCPALRSAI---SDIEVESVEIPGRTLLSVPGYDTKVE--FGVLYSFAYPVEGSDEEIV 270 (995)
T ss_pred ceeeechhHHhhh---hhheecceecCCCceEecCCCCccee--eeeeeEEEEeccCCCCeEE
Confidence 5566676666543 344444 448999999997666665 7877778888888888443
No 139
>PLN02381 valyl-tRNA synthetase
Probab=79.58 E-value=2.2 Score=55.52 Aligned_cols=60 Identities=5% Similarity=-0.036 Sum_probs=48.2
Q ss_pred ccHHHHHHHHHHHHhhcCCCCC---CeeecccccHHHHHHHHhCcccCCC-cccCCcccccCCC
Q psy6851 626 TLPKHWEAEFHKDMADLNVLPP---TVLTRVSEYIPEIVASAQTPKPAAA-KKAESSSDDDSSS 685 (948)
Q Consensus 626 ~~~~~~~~~f~~dm~~L~v~~p---~~~~rvse~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvss 685 (948)
+++..|...+.+.|.+||+.-- ..+|---+|...+.....+|.++|+ |....-|++|..+
T Consensus 211 ~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~VnWcP~~ 274 (1066)
T PLN02381 211 KWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEAFVRLYKEGLIYRDIRLVNWDCTL 274 (1066)
T ss_pred HHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHHHHHHHHHHCCCEEeccccccCCCCC
Confidence 4677899999999999998642 2444445688888899999999999 9998888888655
No 140
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=75.91 E-value=8.8 Score=46.78 Aligned_cols=60 Identities=12% Similarity=-0.061 Sum_probs=47.1
Q ss_pred cccHHHHHHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cccCCcccccCCC
Q psy6851 625 ATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KKAESSSDDDSSS 685 (948)
Q Consensus 625 ~~~~~~~~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvss 685 (948)
..+...-.+.|.+++.+|||.- |.+.-=|-|-+.+-..|+.|.++|+ |+.+|.++++.+.
T Consensus 230 ~~~~~~~l~~~~~~~~~l~V~f-D~~~~es~~~~~~~~v~~~L~~~g~~~e~dGa~~~~~~~ 290 (562)
T PRK12451 230 NWFRHESLKEFSRIYELLGVEF-TNFQGEAFYNDLMEDFIGILEEHDLLEESEGALVVNLEE 290 (562)
T ss_pred HHHHHHHHHHHHHHHHHcCCCc-eeecchHhhhhhHHHHHHHHHHCCCEEecCCeEEEEecc
Confidence 4455667789999999999987 5555555566777777888999999 9999999877654
No 141
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=75.36 E-value=12 Score=34.89 Aligned_cols=45 Identities=22% Similarity=0.225 Sum_probs=37.8
Q ss_pred HhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHH-HHHHHHHHhhhcC
Q psy6851 290 ADLELSTRFIQTKNNVHAALCDNMDTRSALDSI-RDCISQVNIYLRG 335 (948)
Q Consensus 290 ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaL-feLVraiN~yLd~ 335 (948)
.|..+...+..+..++..+| +++++..|++.+ +++++.+|.|++.
T Consensus 36 ~d~~~~~~~~~~i~~v~~~~-~~~~f~~a~~~~~~~~~~~~~~Y~~~ 81 (117)
T cd07959 36 IDRWLLSRLNRLIKETTEAY-ENMQFREALKEGLYELQNDLDWYRER 81 (117)
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777889999999 799999999997 9999999999874
No 142
>KOG0433|consensus
Probab=71.27 E-value=6.8 Score=48.74 Aligned_cols=13 Identities=31% Similarity=0.601 Sum_probs=12.3
Q ss_pred CCCccccchhhhH
Q psy6851 863 QEGKELSKGLAKK 875 (948)
Q Consensus 863 ~~g~kmsKsl~n~ 875 (948)
=+|.||||||||+
T Consensus 609 E~G~KMSKSlGNV 621 (937)
T KOG0433|consen 609 ENGNKMSKSLGNV 621 (937)
T ss_pred CCccchhhcccCc
Confidence 5899999999999
No 143
>KOG1147|consensus
Probab=71.14 E-value=3.9 Score=49.17 Aligned_cols=48 Identities=19% Similarity=0.258 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cccC
Q psy6851 628 PKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KKAE 676 (948)
Q Consensus 628 ~~~~~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~~~ 676 (948)
..+|++-..+|+.-|||. |+.++-.|+|.++|+.+..+||..|- |..+
T Consensus 248 ~~eFe~~IleDl~~LgIk-pd~~TyTSDyF~~i~dycv~likeGKAYvDD 296 (712)
T KOG1147|consen 248 NEEFEDVILEDLSLLGIK-PDRVTYTSDYFDEIMDYCVKLIKEGKAYVDD 296 (712)
T ss_pred hHHHHHHHHHHHHHhCcC-cceeeechhhHHHHHHHHHHHHhcCcccccC
Confidence 568999999999999997 59999999999999999999999999 9754
No 144
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=67.72 E-value=2.8 Score=48.45 Aligned_cols=26 Identities=12% Similarity=-0.018 Sum_probs=8.4
Q ss_pred ccccEEEccc-chhhcchhHHHHHHHH
Q psy6851 239 KYGKVRVHLS-QKQQSLKLVVIMKEFF 264 (948)
Q Consensus 239 h~G~l~i~ge-KMSKSLGN~vti~ef~ 264 (948)
.+.++.++|. |||||.||++|+++.+
T Consensus 271 ~YE~~~~~g~~kmSsSkG~~~t~~e~L 297 (360)
T PF01921_consen 271 PYEFFLDKGGGKMSSSKGNGITPEEWL 297 (360)
T ss_dssp EE--EEES--------------HHHHH
T ss_pred CeeEEEeCCCcccccCCCCccCHHHHH
Confidence 3567888876 9999999999999975
No 145
>PLN02943 aminoacyl-tRNA ligase
Probab=66.75 E-value=7 Score=50.54 Aligned_cols=60 Identities=5% Similarity=-0.018 Sum_probs=46.0
Q ss_pred ccHHHHHHHHHHHHhhcCCCCC---CeeecccccHHHHHHHHhCcccCCC-cccCCcccccCCC
Q psy6851 626 TLPKHWEAEFHKDMADLNVLPP---TVLTRVSEYIPEIVASAQTPKPAAA-KKAESSSDDDSSS 685 (948)
Q Consensus 626 ~~~~~~~~~f~~dm~~L~v~~p---~~~~rvse~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvss 685 (948)
+++.+|...+.+.|.+||+.-- ...|---+|...+.....+|.++|+ |....-|++|...
T Consensus 170 ~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~ 233 (958)
T PLN02943 170 EWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFVRLHEKGLIYQGSYMVNWSPNL 233 (958)
T ss_pred HHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEEecCceeccCCCC
Confidence 4567899999999999999532 2333334577788888889999999 9988888888654
No 146
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=66.60 E-value=24 Score=34.36 Aligned_cols=45 Identities=24% Similarity=0.243 Sum_probs=38.5
Q ss_pred HhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH--HHHhhhcC
Q psy6851 290 ADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCIS--QVNIYLRG 335 (948)
Q Consensus 290 ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVr--aiN~yLd~ 335 (948)
.+..+...+.++...+..+| +.+.+..|+..+++++. .+|.|++.
T Consensus 43 ~d~~l~~~~~~~~~~~~~~~-e~~~~~~al~~i~~~~~~~~~N~Yi~~ 89 (135)
T cd07962 43 ADRWILSRLNKTVEEVTEAL-ENYRFSEAATALYEFFWNDFCDWYLEL 89 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34556667778889999999 89999999999999998 69999974
No 147
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=64.98 E-value=7.2 Score=50.60 Aligned_cols=60 Identities=5% Similarity=-0.105 Sum_probs=47.9
Q ss_pred ccHHHHHHHHHHHHhhcCCCCC---CeeecccccHHHHHHHHhCcccCCC-cccCCcccccCCC
Q psy6851 626 TLPKHWEAEFHKDMADLNVLPP---TVLTRVSEYIPEIVASAQTPKPAAA-KKAESSSDDDSSS 685 (948)
Q Consensus 626 ~~~~~~~~~f~~dm~~L~v~~p---~~~~rvse~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvss 685 (948)
+.+.+|...+.++|.+||+.-- ...|---+|...+.....+|.++|+ |....-|++|..+
T Consensus 143 ~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~ 206 (995)
T PTZ00419 143 EWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVKEAFVRLYEDGLIYRDTRLVNWCCYL 206 (995)
T ss_pred HHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeecCCCC
Confidence 4578999999999999998642 2344444577788888889999999 9998889998655
No 148
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=64.37 E-value=14 Score=42.33 Aligned_cols=61 Identities=15% Similarity=0.033 Sum_probs=43.3
Q ss_pred ccccHHH-HHHHHHHHHhhcCCCCCCeeecccc--cHHHHHHHHhCcccCCC-cccCCcccccCCC
Q psy6851 624 FATLPKH-WEAEFHKDMADLNVLPPTVLTRVSE--YIPEIVASAQTPKPAAA-KKAESSSDDDSSS 685 (948)
Q Consensus 624 f~~~~~~-~~~~f~~dm~~L~v~~p~~~~rvse--~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvss 685 (948)
|.++... ..+...+++.+|+|.- +++..=+| +-+.+-..|+.|.++|+ |+.+|.++++++.
T Consensus 139 ~~~~~~~~~~~~~k~~l~~l~i~f-Dv~~~E~Es~~~~~v~~vl~~L~e~g~~~~~dGa~~i~~~~ 203 (354)
T PF00750_consen 139 FRELWQKYILEWSKETLQRLYIRF-DVWFDESESFYSGKVDEVLERLKEKGLLYESDGALWIDLTK 203 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT----SEEEEHCHHHHTTHHHHHHHHHHCTTTEEEETTEEEEEGCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CcCcccchhhhhhHHHHHHHHHHhCCcEEecCCcEEEechh
Confidence 4445555 6667788899999976 66653344 44556677788999999 9999999999876
No 149
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A.
Probab=63.87 E-value=19 Score=34.01 Aligned_cols=71 Identities=13% Similarity=0.218 Sum_probs=51.7
Q ss_pred HHhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcCC------CC------HHHHHHHHHHHHHHHhHc
Q psy6851 289 QADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGT------PN------QLLLRDIGAYVTKILTVF 356 (948)
Q Consensus 289 ~ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~~------~~------~~lL~~i~~~V~~mL~VL 356 (948)
+.+..|...+..+...+..+. .+++.+..+..+++|+...|.+.+.. .. ..++..+...+...+++|
T Consensus 33 ~~e~~L~~~l~~~~~~l~~a~-~~~~p~~l~~yL~~La~~f~~fy~~~~I~~~~~~~~~~~RL~Ll~~v~~vl~~~l~ll 111 (119)
T PF05746_consen 33 EEERELLKQLARFPDVLEKAA-KDLEPHKLCDYLYELAQAFNSFYDNVRILDEDEEIRKNNRLALLKAVRQVLKNGLDLL 111 (119)
T ss_dssp HHHHHHHHHHCTHHHHHHHHH-HHT-CHHHHHHHHHHHHHHHHHHHHS-STTSTTCHH-HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345566677777788888888 77999999999999999999987532 11 235666777888899999
Q ss_pred cccc
Q psy6851 357 GCIG 360 (948)
Q Consensus 357 GL~~ 360 (948)
||.+
T Consensus 112 gi~~ 115 (119)
T PF05746_consen 112 GIEP 115 (119)
T ss_dssp T---
T ss_pred CCCc
Confidence 9964
No 150
>PLN02286 arginine-tRNA ligase
Probab=62.40 E-value=30 Score=42.45 Aligned_cols=59 Identities=17% Similarity=0.035 Sum_probs=42.6
Q ss_pred cccHHHHHHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cccCCcccccCCC
Q psy6851 625 ATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KKAESSSDDDSSS 685 (948)
Q Consensus 625 ~~~~~~~~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvss 685 (948)
..+.......|.+.+..|||.- +.. -=|-|-+.+-..|+.|.++|+ |+.+|.++++.+.
T Consensus 235 ~~~~~~~~~~~~~~y~~l~V~f-d~~-ges~y~~~~~~vi~~L~~~g~~~e~dGa~~v~l~~ 294 (576)
T PLN02286 235 AKICEISRREFEKVYQRLRVEL-EEK-GESFYNPYIPGVIEELESKGLVVESDGARVIFVEG 294 (576)
T ss_pred HHHHHHHHHHHHHHHHHhCCee-eec-CchhhhhhHHHHHHHHHHCCCEEeeCCceEeeccC
Confidence 3456677889999999999984 332 222344556666778999999 9999998876643
No 151
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=62.40 E-value=4.9 Score=45.94 Aligned_cols=52 Identities=21% Similarity=0.210 Sum_probs=36.1
Q ss_pred HHHHHhhcCCCceeecCCCCCCCCCCh--hHHHHHhc------------cC--CCC----CCCccccchhhhH
Q psy6851 823 SVMASAVLGPQLDIHTGGVDLKFPHHD--NELAQAEG------------LP--THD----QEGKELSKGLAKK 875 (948)
Q Consensus 823 s~m~~~~lg~~~dih~GG~Dl~FPHH~--ne~aq~e~------------~~--~~~----~~g~kmsKsl~n~ 875 (948)
.-||..+|=-.-|+=-+|+|=. |||+ -++|+.-. .. .+. .+|.|||||.+|.
T Consensus 139 vLqAADIl~~~~d~VpvG~DQ~-qhleLtRdiA~rfn~~yg~~f~~P~~~~~~~~~~l~gLdg~KMSKS~~n~ 210 (332)
T PRK12556 139 ILMAADILLFQATHVPVGKDQI-QHIEIARDIATYFNHTFGDTFTLPEYVIQEEGAILPGLDGRKMSKSYGNV 210 (332)
T ss_pred HHHhhhhhhccCCEEEeccccH-HHHHHHHHHHHHHHHhccccCCCceeccccccccccCCCCCCCCCCCCCc
Confidence 4577777766678888899965 7887 47776522 10 111 5789999999987
No 152
>KOG1147|consensus
Probab=61.22 E-value=11 Score=45.54 Aligned_cols=48 Identities=27% Similarity=0.326 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeeeC
Q psy6851 103 MFKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESN 152 (948)
Q Consensus 103 l~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes~ 152 (948)
-..+|.+...+|+. || .|+.++--|+|.++|+ +|+.+||..|-||+.|
T Consensus 247 E~~eFe~~IleDl~~LgI-kpd~~TyTSDyF~~i~-dycv~likeGKAYvDD 296 (712)
T KOG1147|consen 247 ENEEFEDVILEDLSLLGI-KPDRVTYTSDYFDEIM-DYCVKLIKEGKAYVDD 296 (712)
T ss_pred hhHHHHHHHHHHHHHhCc-CcceeeechhhHHHHH-HHHHHHHhcCcccccC
Confidence 34456777777776 87 5799999999999999 7999999999999864
No 153
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=58.17 E-value=3.2 Score=48.55 Aligned_cols=43 Identities=21% Similarity=0.190 Sum_probs=31.4
Q ss_pred CCceeecCCCCCCCCCCh--hHHHHHhcc---CC--CC----CCCccccchhhhH
Q psy6851 832 PQLDIHTGGVDLKFPHHD--NELAQAEGL---PT--HD----QEGKELSKGLAKK 875 (948)
Q Consensus 832 ~~~dih~GG~Dl~FPHH~--ne~aq~e~~---~~--~~----~~g~kmsKsl~n~ 875 (948)
...||-.||.|=. ||++ -|+|.--.. ++ .+ .+|+|||||.+|.
T Consensus 187 ~~~~i~~gG~DQ~-~ni~~grdla~r~~~~~~~~l~~plL~~~~G~KMsKS~~na 240 (408)
T PRK05912 187 YGCDLQLGGSDQW-GNILSGRDLQRRYGGKPQFGLTMPLLTGLDGKKMGKSEGNA 240 (408)
T ss_pred CCCCEEeccHHHH-HHHHHHHHHHHHhCCCCeEEEecCCcCCCCCCcccCCCCCc
Confidence 3688999999988 5888 577766421 11 11 6889999999887
No 154
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=57.03 E-value=6.2 Score=44.98 Aligned_cols=66 Identities=24% Similarity=0.228 Sum_probs=43.1
Q ss_pred HHHHHhhcCCCceeecCCCCCCCCCCh--hHHHHHhcc-----CCCC-------------CCCccccchhhh-H--hhhH
Q psy6851 823 SVMASAVLGPQLDIHTGGVDLKFPHHD--NELAQAEGL-----PTHD-------------QEGKELSKGLAK-K--LKKL 879 (948)
Q Consensus 823 s~m~~~~lg~~~dih~GG~Dl~FPHH~--ne~aq~e~~-----~~~~-------------~~g~kmsKsl~n-~--l~~~ 879 (948)
+-||..+|=...|+--+|+|- -|||+ -|+|+--.. +..+ .+|+|||||.+| . |..-
T Consensus 129 ~lqaaDil~~~~d~vpvG~DQ-~~h~elaRdia~r~n~~~~~~f~~P~~l~~~~~~~l~gl~~~KMSKS~~~s~I~L~D~ 207 (328)
T TIGR00233 129 VLQAADILLYQADLVPVGIDQ-DQHLELTRDLAERFNKKFKNFFPKPESLISKFFPRLMGLSGKKMSKSDPNSAIFLTDT 207 (328)
T ss_pred HHHHhhhhhcCCCeeeccccc-HHHHHHHHHHHHHhhhhcCcccCCChhhhccccCCCCCCCCCcCCCCCCCCeEeecCC
Confidence 467888887788999999998 48888 466655441 1111 345799999998 3 3333
Q ss_pred HHHHHHHHHH
Q psy6851 880 QLTQEKKYNE 889 (948)
Q Consensus 880 ~~~~~~~~~~ 889 (948)
..+.+++++.
T Consensus 208 ~e~I~~KI~~ 217 (328)
T TIGR00233 208 PKQIKKKIRK 217 (328)
T ss_pred HHHHHHHHHh
Confidence 4455555544
No 155
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=53.37 E-value=41 Score=41.45 Aligned_cols=63 Identities=10% Similarity=0.052 Sum_probs=47.3
Q ss_pred ccccccHHHHHHHHHHHHhhcCCCCCCeeecccc--cHHHHHHHHhCcccCCC-cccCCcccccCCC
Q psy6851 622 SIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSE--YIPEIVASAQTPKPAAA-KKAESSSDDDSSS 685 (948)
Q Consensus 622 ~~f~~~~~~~~~~f~~dm~~L~v~~p~~~~rvse--~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvss 685 (948)
.+++.+.......|.+++++|||.- |.+.--+| +-+.|-..|+.|.++|+ |+.+|-.+.+.++
T Consensus 232 ~lw~~~v~~~l~~~k~~l~~l~V~f-D~~~~E~e~~~~~~~~~vv~~L~~~~~~~e~~GA~~vdl~~ 297 (577)
T COG0018 232 ELWRKFVDLSLEGIKETLDRLGVKF-DVYDSEGESFYNGKVEKVVEDLEEKGLLYEDDGALVVDLLK 297 (577)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccc-ceeeccchhhhcccHHHHHHHHHhcCCEeeeCCeEEEehhh
Confidence 3566778888999999999999986 66643344 22235566777999999 9989988777654
No 156
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=51.66 E-value=14 Score=44.81 Aligned_cols=48 Identities=13% Similarity=0.057 Sum_probs=42.9
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cc
Q psy6851 627 LPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KK 674 (948)
Q Consensus 627 ~~~~~~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~ 674 (948)
-...|++...+|++.||+.+-+-..+.|+|.+.+-+++++|+++|. |.
T Consensus 47 ~~~e~~~~I~~dL~wLG~~~d~~~~~qS~~~~~~~~~a~~Li~~G~AY~ 95 (522)
T TIGR00440 47 EDPEYVESIKRDVEWLGFKWEGKIRYSSDYFDELYRYAEELIKKGLAYV 95 (522)
T ss_pred CChHHHHHHHHHHHHcCCCCCCCceEccccHHHHHHHHHHHHHcCCEEe
Confidence 3458999999999999998756677899999999999999999999 85
No 157
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=51.44 E-value=6.9 Score=45.62 Aligned_cols=52 Identities=17% Similarity=0.250 Sum_probs=34.0
Q ss_pred HHHHHhhcCCCceeecCCCCCCCCCCh--hHHHHHhccCCC------C----C-CC-ccccchhhhH
Q psy6851 823 SVMASAVLGPQLDIHTGGVDLKFPHHD--NELAQAEGLPTH------D----Q-EG-KELSKGLAKK 875 (948)
Q Consensus 823 s~m~~~~lg~~~dih~GG~Dl~FPHH~--ne~aq~e~~~~~------~----~-~g-~kmsKsl~n~ 875 (948)
.-|+..+|--..||-.||+|=. |||+ -|+|+.-.+... + . +| .|||||.+|-
T Consensus 200 ~LQaaDil~l~adivpvG~DQ~-~~~~LaRdia~~~~~~~~~~~~~~~~lpgL~dg~~KMSKS~~ns 265 (383)
T PTZ00126 200 CMQCADIFYLKADICQLGMDQR-KVNMLAREYCDKKKIKKKPIILSHHMLPGLLEGQEKMSKSDPNS 265 (383)
T ss_pred HHHhhhhhccCCCEEEeCccHH-HHHHHHHHHHHHhCCCCCceeecccccccCCCCCCCCCcCCCCC
Confidence 4566777777888888999986 6665 344444332111 1 3 44 7999999873
No 158
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=50.90 E-value=4.7 Score=44.52 Aligned_cols=41 Identities=22% Similarity=0.405 Sum_probs=29.9
Q ss_pred eeecCCCCCCCCCCh--hHHHHHhccCC-----CC----CCCccccchhhhHh
Q psy6851 835 DIHTGGVDLKFPHHD--NELAQAEGLPT-----HD----QEGKELSKGLAKKL 876 (948)
Q Consensus 835 dih~GG~Dl~FPHH~--ne~aq~e~~~~-----~~----~~g~kmsKsl~n~l 876 (948)
|+--||+|-. ||++ -|+|+--.+.. ++ .+|.|||||.+|.+
T Consensus 153 ~l~~~G~DQ~-~~i~~~rd~a~r~~~~~~~~l~~~ll~~l~G~KMSKS~~~~~ 204 (269)
T cd00805 153 DLQLGGSDQR-GNITLGRDLIRKLGYKKVVGLTTPLLTGLDGGKMSKSEGNAI 204 (269)
T ss_pred CeeEecHHHH-HHHHHHHHHHHHhCCCCcEEEeeccccCCCCCcccCCCCCcc
Confidence 7888999987 8887 36666553311 01 78999999999885
No 159
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=50.43 E-value=15 Score=44.77 Aligned_cols=53 Identities=13% Similarity=0.046 Sum_probs=45.6
Q ss_pred cccccccccHHHHHHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cc
Q psy6851 619 TDNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KK 674 (948)
Q Consensus 619 ~~~~~f~~~~~~~~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~ 674 (948)
||++. -...|++...+|++.||+.+-+-....|+|++.+-+++++|+++|. |.
T Consensus 71 Td~~r---~~~e~~~~I~~dL~wLGi~~d~~~~~qS~r~~~~y~~a~~Li~~G~AY~ 124 (554)
T PRK05347 71 TNPEK---EDQEYVDSIKEDVRWLGFDWSGELRYASDYFDQLYEYAVELIKKGKAYV 124 (554)
T ss_pred CCCCc---CChHHHHHHHHHHHHcCCCCCCCceeeecCHHHHHHHHHHHHHcCCEee
Confidence 55543 3468999999999999998756778899999999999999999999 85
No 160
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=50.26 E-value=14 Score=44.81 Aligned_cols=52 Identities=17% Similarity=0.220 Sum_probs=45.2
Q ss_pred cccccccccHHHHHHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cc
Q psy6851 619 TDNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KK 674 (948)
Q Consensus 619 ~~~~~f~~~~~~~~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~ 674 (948)
||+. .-...|++...+|++.||+. ++...+.|+|.+..-+++++|+++|. |.
T Consensus 53 TDp~---R~~~e~~~~I~~dL~WLGl~-wD~~~~qSdr~~~y~~~a~~Li~~G~AY~ 105 (523)
T PLN03233 53 TNPS---KEKAEFEESIIEDLGKIEIK-PDSVSFTSDYFEPIRCYAIILIEEGLAYM 105 (523)
T ss_pred CCCC---ccchHHHHHHHHHHHHhCCC-CCCCccccccHHHHHHHHHHHHHcCCeEe
Confidence 5553 34468999999999999998 48888999999999999999999999 85
No 161
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=49.92 E-value=15 Score=46.53 Aligned_cols=53 Identities=15% Similarity=0.045 Sum_probs=45.8
Q ss_pred cccccccccHHHHHHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cc
Q psy6851 619 TDNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KK 674 (948)
Q Consensus 619 ~~~~~f~~~~~~~~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~ 674 (948)
||++. -...|++...+|++.||+..+....+.|+|.+.+-+++++|+++|. |.
T Consensus 73 Td~~r---~~~e~~~~I~~dl~wLG~~wd~~~~~qS~~~~~y~~~a~~Li~~G~aY~ 126 (771)
T PRK14703 73 TNPET---EDTEYVEAIKDDVRWLGFDWGEHLYYASDYFERMYAYAEQLIKMGLAYV 126 (771)
T ss_pred CCCCc---CChHHHHHHHHHHHHcCCCCCCCceEeecCHHHHHHHHHHHHHcCCccc
Confidence 55543 3358999999999999999876678999999999999999999999 85
No 162
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=49.39 E-value=7.7 Score=45.90 Aligned_cols=52 Identities=21% Similarity=0.204 Sum_probs=32.3
Q ss_pred HHHHHhhcCCCceeecCCCCCCCCCCh--hHHHHHhcc-CC-----CC-------------CCCccccchhhhH
Q psy6851 823 SVMASAVLGPQLDIHTGGVDLKFPHHD--NELAQAEGL-PT-----HD-------------QEGKELSKGLAKK 875 (948)
Q Consensus 823 s~m~~~~lg~~~dih~GG~Dl~FPHH~--ne~aq~e~~-~~-----~~-------------~~g~kmsKsl~n~ 875 (948)
.-||..+|=-+-|+=-.|.|=+ ||+| .|||+.-.. ++ .+ .+|.|||||.+|.
T Consensus 138 vLqAADILly~ad~VPVG~DQ~-qHlELaRdIA~rFN~~yg~~~F~~Pe~~i~~~~~~I~gLdg~KMSKS~~n~ 210 (431)
T PRK12284 138 VLMAADILMFNAHKVPVGRDQI-QHIEMARDIAQRFNHLYGGEFFVLPEAVIEESVATLPGLDGRKMSKSYDNT 210 (431)
T ss_pred HHHHhhhhhcCCCEEEEcchhH-HHHHHHHHHHHHHhhhcCCcccCCCccccccccccccCCCCccccCCCCCE
Confidence 3566666655666666667754 5665 466665321 11 01 5689999999987
No 163
>smart00836 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505.
Probab=48.86 E-value=1e+02 Score=29.26 Aligned_cols=70 Identities=16% Similarity=0.233 Sum_probs=51.1
Q ss_pred HhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcCC-----CC-------HHHHHHHHHHHHHHHhHcc
Q psy6851 290 ADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGT-----PN-------QLLLRDIGAYVTKILTVFG 357 (948)
Q Consensus 290 ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~~-----~~-------~~lL~~i~~~V~~mL~VLG 357 (948)
.+..|...+..+.+.+..++ .+.+....+..+++|+..+|.+.+.. .+ ..++..+...+..++.+||
T Consensus 37 ~E~~L~~~i~~~~~~i~~~~-~~~~~~~l~~~l~~L~~~~~~fy~~v~V~~~~~~~~~~~RL~Ll~~~~~~l~~~~~llg 115 (122)
T smart00836 37 EELALLRLLARFPEVLEAAA-ETLEPHRLANYLYDLASAFHSFYNKCRVLGEENPELRAARLALLKAVRQVLANGLRLLG 115 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHCCcHHHHHHHHHHHHHHHHHHccCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34556666666777777776 67899999999999999999987531 11 2345566677788889999
Q ss_pred ccc
Q psy6851 358 CIG 360 (948)
Q Consensus 358 L~~ 360 (948)
|.+
T Consensus 116 i~~ 118 (122)
T smart00836 116 ISA 118 (122)
T ss_pred CCc
Confidence 864
No 164
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=47.93 E-value=92 Score=31.26 Aligned_cols=70 Identities=10% Similarity=0.135 Sum_probs=52.5
Q ss_pred HhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcCC----CC-------HHHHHHHHHHHHHHHhHccc
Q psy6851 290 ADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGT----PN-------QLLLRDIGAYVTKILTVFGC 358 (948)
Q Consensus 290 ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~~----~~-------~~lL~~i~~~V~~mL~VLGL 358 (948)
.+..|...+..+++.+..++ .+.+...++..+.+|...+|.+.+.. .+ ..++..+...+...+.+|||
T Consensus 72 ~E~~L~~~l~~~~~~i~~~~-~~~~~~~l~~~l~~L~~~~~~ffd~v~V~~~~~~i~~nRL~Ll~~v~~vl~~~l~llgi 150 (156)
T cd07956 72 DERDLILLLAKFPEVVKNAA-ETLEPHTIATYLFDLAHAFSKFYNACPVLGAEEELRNARLALVAAARQVLANGLDLLGI 150 (156)
T ss_pred HHHHHHHHHHHhHHHHHHHH-HHcCcHHHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 35556666777777778777 56899999999999999999987632 11 23566666778888999998
Q ss_pred cc
Q psy6851 359 IG 360 (948)
Q Consensus 359 ~~ 360 (948)
.+
T Consensus 151 ~~ 152 (156)
T cd07956 151 EA 152 (156)
T ss_pred Cc
Confidence 64
No 165
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=47.73 E-value=19 Score=36.26 Aligned_cols=31 Identities=35% Similarity=0.563 Sum_probs=26.2
Q ss_pred HHHHHhhhcCCeEEEecccccchHHHHHHHHhcc
Q psy6851 442 LRRILSEYFNYNITYAMNITDIDDKIIKRARQNY 475 (948)
Q Consensus 442 lrR~l~~y~gy~v~~v~NiTDiDDKIi~ra~~~~ 475 (948)
|-|.|+ .+|||+.|+.++ -|+.|+..|++++
T Consensus 12 Lar~LR-~lG~Dt~~~~~~--~D~~il~~A~~e~ 42 (147)
T PF01927_consen 12 LARWLR-LLGYDTLYSRDI--DDDEILELAREEG 42 (147)
T ss_pred HHHHHH-HCCCcEEEeCCC--ChHHHHHHhhhCC
Confidence 679998 899999999977 4667999998874
No 166
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=47.73 E-value=5.8 Score=44.00 Aligned_cols=66 Identities=20% Similarity=0.037 Sum_probs=37.9
Q ss_pred CceeecCCCCCCCCCCh--hHHHHHhccCCC------C----CCCccccchhhhHh--hhH----HHHHHHHHHHHHHHH
Q psy6851 833 QLDIHTGGVDLKFPHHD--NELAQAEGLPTH------D----QEGKELSKGLAKKL--KKL----QLTQEKKYNEYIASV 894 (948)
Q Consensus 833 ~~dih~GG~Dl~FPHH~--ne~aq~e~~~~~------~----~~g~kmsKsl~n~l--~~~----~~~~~~~~~~~~~~~ 894 (948)
..||--||+|=. ||++ -|+|+--..+.. + .+|.|||||.+|-+ -.. ..-+.|..+-+-.+|
T Consensus 153 ~~~~vp~G~DQ~-~~i~l~rdla~r~n~~~~p~~l~~p~l~~l~G~KMSKS~~~~i~l~~~~dsp~~i~~ki~~a~d~~v 231 (273)
T cd00395 153 GCDIQPGGSDQW-GNITLGRELARRFNGFTIAEGLTIPLVTKLDGPKFGKSESGPKWLDTEKTSPYEFYQFWINAVDSDV 231 (273)
T ss_pred CCcEEEecHHHH-HHHHHHHHHHHHhCCCCCCeEEeeccccCCCCCcCCCCCCCCccccccCCCHHHHHHHHHcccHhHH
Confidence 458888888854 6776 466665321111 1 68999999999882 111 233444444444455
Q ss_pred HHHhh
Q psy6851 895 QKATL 899 (948)
Q Consensus 895 ~~~~~ 899 (948)
-.+++
T Consensus 232 ~~~~~ 236 (273)
T cd00395 232 INILK 236 (273)
T ss_pred HHHHH
Confidence 44443
No 167
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=46.93 E-value=20 Score=40.00 Aligned_cols=47 Identities=6% Similarity=-0.121 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cc
Q psy6851 628 PKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KK 674 (948)
Q Consensus 628 ~~~~~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~ 674 (948)
...|++...+|++.||+..-.-..+.|++++..-+++++|+++|. |.
T Consensus 48 ~~~~~~~I~~dL~wLGl~wDe~~~~QS~r~~~Y~~~~~~L~~~G~aY~ 95 (272)
T TIGR03838 48 VPGAADDILRTLEAYGLHWDGEVVYQSQRHALYQAALDRLLAAGLAYP 95 (272)
T ss_pred ChHHHHHHHHHHHHcCCCCCCCeeeeeCCHHHHHHHHHHHHHcCCEEe
Confidence 457889999999999998644445899999999999999999998 74
No 168
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=45.09 E-value=30 Score=42.32 Aligned_cols=44 Identities=20% Similarity=0.203 Sum_probs=36.4
Q ss_pred HHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeee
Q psy6851 106 METDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYE 150 (948)
Q Consensus 106 ~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYe 150 (948)
.+.+++.++++ |+.+-.-..+.|+|++.+- +++++||++|+||.
T Consensus 79 e~~~~I~~dL~wLGi~~d~~~~~qS~r~~~~y-~~a~~Li~~G~AY~ 124 (554)
T PRK05347 79 EYVDSIKEDVRWLGFDWSGELRYASDYFDQLY-EYAVELIKKGKAYV 124 (554)
T ss_pred HHHHHHHHHHHHcCCCCCCCceeeecCHHHHH-HHHHHHHHcCCEee
Confidence 45666777777 8866466678999999999 79999999999996
No 169
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=45.00 E-value=31 Score=42.00 Aligned_cols=43 Identities=26% Similarity=0.324 Sum_probs=35.5
Q ss_pred HHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeee
Q psy6851 107 ETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYE 150 (948)
Q Consensus 107 ~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYe 150 (948)
+.+++.++++ |+.+-.-..+.|+|++.+- +++++||++|.||.
T Consensus 51 ~~~~I~~dL~wLG~~~d~~~~~qS~~~~~~~-~~a~~Li~~G~AY~ 95 (522)
T TIGR00440 51 YVESIKRDVEWLGFKWEGKIRYSSDYFDELY-RYAEELIKKGLAYV 95 (522)
T ss_pred HHHHHHHHHHHcCCCCCCCceEccccHHHHH-HHHHHHHHcCCEEe
Confidence 5566666776 8866456678999999999 79999999999996
No 170
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=44.68 E-value=66 Score=37.00 Aligned_cols=31 Identities=26% Similarity=0.651 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHcCCeeeeCCcEEEeeccCC
Q psy6851 132 PEIVASYIEKIIANGLAYESNGSVYFNVNAFD 163 (948)
Q Consensus 132 peII~~~I~~LI~~G~AYes~GsVYFDv~~f~ 163 (948)
+.+- +.|++|.++|++|+.+|.++|+++.|.
T Consensus 175 ~~v~-~vl~~L~e~g~~~~~dGa~~i~~~~~g 205 (354)
T PF00750_consen 175 GKVD-EVLERLKEKGLLYESDGALWIDLTKFG 205 (354)
T ss_dssp THHH-HHHHHHHCTTTEEEETTEEEEEGCCTS
T ss_pred hHHH-HHHHHHHhCCcEEecCCcEEEechhcC
Confidence 3444 577899999999999999999998774
No 171
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=44.57 E-value=19 Score=44.12 Aligned_cols=47 Identities=11% Similarity=-0.002 Sum_probs=42.3
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cc
Q psy6851 627 LPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KK 674 (948)
Q Consensus 627 ~~~~~~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~ 674 (948)
-...|.+...+|++.||+.+ +..+..|+|++.+-+++++|+++|. |.
T Consensus 98 ~~~e~~~~I~~dL~wLGi~~-D~~~~qS~y~~~~ye~A~~Li~~G~AY~ 145 (574)
T PTZ00437 98 EEQVYIDAIMEMVKWMGWKP-DWVTFSSDYFDQLHEFAVQLIKDGKAYV 145 (574)
T ss_pred cChHHHHHHHHHHHHcCCCC-CCCCcCchhHHHHHHHHHHHHHcCCEEE
Confidence 44689999999999999985 7778999999999999999999999 85
No 172
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A ....
Probab=44.27 E-value=62 Score=31.66 Aligned_cols=41 Identities=22% Similarity=0.319 Sum_probs=32.2
Q ss_pred HhHHHHHHHHHHHHHHhhcCChHHHHHHHHHH-HHHH-HhhhcC
Q psy6851 294 LSTRFIQTKNNVHAALCDNMDTRSALDSIRDC-ISQV-NIYLRG 335 (948)
Q Consensus 294 L~~~l~el~e~F~aAL~DDFNTP~ALaaLfeL-Vrai-N~yLd~ 335 (948)
+...+..+...+..+| ++|++..|+..|+.+ ++.. |.|++.
T Consensus 4 il~~~~~~~~~~~~~~-e~~~f~~a~~~i~~f~~~~~~n~Yl~~ 46 (153)
T PF08264_consen 4 ILSKLNELIKKVTEAY-ENYEFNKALKEIMNFIWNDLSNWYLEL 46 (153)
T ss_dssp HHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456677888899999 679999999999997 4555 999863
No 173
>PLN02907 glutamate-tRNA ligase
Probab=43.81 E-value=20 Score=45.12 Aligned_cols=52 Identities=19% Similarity=0.278 Sum_probs=45.6
Q ss_pred cccccccccHHHHHHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cc
Q psy6851 619 TDNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KK 674 (948)
Q Consensus 619 ~~~~~f~~~~~~~~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~ 674 (948)
||++ .-...|++...+|++.||+.+ +-..+.|+|.+.+-+++++||++|. |.
T Consensus 255 Tdp~---r~~~e~~~~I~~dl~wLG~~~-d~~~~qS~r~~~y~~~a~~Li~~G~aY~ 307 (722)
T PLN02907 255 TNPS---KESDEFVENILKDIETLGIKY-DAVTYTSDYFPQLMEMAEKLIKEGKAYV 307 (722)
T ss_pred CCCC---cCChHHHHHHHHHHHHcCCCC-CCcccccccHHHHHHHHHHHHHcCCeee
Confidence 5553 344689999999999999985 7788999999999999999999999 96
No 174
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=43.30 E-value=24 Score=43.52 Aligned_cols=52 Identities=23% Similarity=0.177 Sum_probs=43.9
Q ss_pred cccccccccHHHHHHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-c
Q psy6851 619 TDNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-K 673 (948)
Q Consensus 619 ~~~~~f~~~~~~~~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y 673 (948)
||+.- -...|++...+|++.||+..-.-..+.|+|.+..-+++++|+++|. |
T Consensus 94 TDp~R---~~~e~~d~IleDL~WLGl~wDe~~~~QSdr~d~y~e~a~~Li~~G~AY 146 (601)
T PTZ00402 94 TNPSK---EKEHFEQAILDDLATLGVSWDVGPTYSSDYMDLMYEKAEELIKKGLAY 146 (601)
T ss_pred CCCcc---cCHHHHHHHHHHHHHCCCCCCCceeeccccHHHHHHHHHHHHHcCCEE
Confidence 56543 3468999999999999997533377899999999999999999999 9
No 175
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=43.20 E-value=34 Score=41.63 Aligned_cols=42 Identities=24% Similarity=0.317 Sum_probs=35.5
Q ss_pred HHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeee
Q psy6851 107 ETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYE 150 (948)
Q Consensus 107 ~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYe 150 (948)
+.+++.++++ |+. ++-..+.|+|.+.+- ++.++||++|.||.
T Consensus 62 ~~~~I~~dL~WLGl~-wD~~~~qSdr~~~y~-~~a~~Li~~G~AY~ 105 (523)
T PLN03233 62 FEESIIEDLGKIEIK-PDSVSFTSDYFEPIR-CYAIILIEEGLAYM 105 (523)
T ss_pred HHHHHHHHHHHhCCC-CCCCccccccHHHHH-HHHHHHHHcCCeEe
Confidence 5556666666 885 577889999999999 79999999999996
No 176
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=42.26 E-value=33 Score=42.14 Aligned_cols=45 Identities=20% Similarity=0.298 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeee
Q psy6851 104 FKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYE 150 (948)
Q Consensus 104 ~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYe 150 (948)
...+.+++.++++ |+. ++-.+..|+|++.+- +++++||++|.||.
T Consensus 99 ~~e~~~~I~~dL~wLGi~-~D~~~~qS~y~~~~y-e~A~~Li~~G~AY~ 145 (574)
T PTZ00437 99 EQVYIDAIMEMVKWMGWK-PDWVTFSSDYFDQLH-EFAVQLIKDGKAYV 145 (574)
T ss_pred ChHHHHHHHHHHHHcCCC-CCCCCcCchhHHHHH-HHHHHHHHcCCEEE
Confidence 3345666666666 885 477778999999999 79999999999996
No 177
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=40.97 E-value=15 Score=40.67 Aligned_cols=12 Identities=25% Similarity=0.448 Sum_probs=11.1
Q ss_pred CCCc-cccchhhh
Q psy6851 863 QEGK-ELSKGLAK 874 (948)
Q Consensus 863 ~~g~-kmsKsl~n 874 (948)
.+|. |||||.+|
T Consensus 193 l~G~~KMSKS~~n 205 (292)
T PF00579_consen 193 LDGQKKMSKSDPN 205 (292)
T ss_dssp TTSSSBTTTTTTG
T ss_pred cCCccccCccCCc
Confidence 6788 99999999
No 178
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=39.89 E-value=35 Score=43.36 Aligned_cols=44 Identities=23% Similarity=0.221 Sum_probs=37.5
Q ss_pred HHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeee
Q psy6851 106 METDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYE 150 (948)
Q Consensus 106 ~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYe 150 (948)
.+.+++.+++. |+..+....+.|+|.+.+- ++.++||++|.||.
T Consensus 81 e~~~~I~~dl~wLG~~wd~~~~~qS~~~~~y~-~~a~~Li~~G~aY~ 126 (771)
T PRK14703 81 EYVEAIKDDVRWLGFDWGEHLYYASDYFERMY-AYAEQLIKMGLAYV 126 (771)
T ss_pred HHHHHHHHHHHHcCCCCCCCceEeecCHHHHH-HHHHHHHHcCCccc
Confidence 46667777777 9977666788999999999 79999999999996
No 179
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=39.30 E-value=1.5e+02 Score=30.32 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=37.8
Q ss_pred HhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH--HHHhhhcC
Q psy6851 290 ADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCIS--QVNIYLRG 335 (948)
Q Consensus 290 ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVr--aiN~yLd~ 335 (948)
.|.-+...+..+...+.++| +++++..|+..|++++. .+|.|++.
T Consensus 45 ~D~~il~~l~~~i~~~~~~~-e~~~f~~a~~~i~~f~~~~l~n~Yi~~ 91 (180)
T cd07960 45 LDRYALHRLNELIKEVREAY-ENYEFHKVYQALNNFCTVDLSAFYLDI 91 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556667778889999999 78999999999999996 67999874
No 180
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=38.88 E-value=23 Score=42.20 Aligned_cols=47 Identities=15% Similarity=0.072 Sum_probs=42.1
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cc
Q psy6851 627 LPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KK 674 (948)
Q Consensus 627 ~~~~~~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~ 674 (948)
-...+.+.+.+||+.|||. +|...+-|+.++.+-+++++|+++|+ |.
T Consensus 49 s~~~~~~~I~e~L~wLGI~-~De~y~QSer~~~y~~~~e~L~e~G~AY~ 96 (445)
T PRK12558 49 SKQEYADAIAEDLKWLGIN-WDRTFRQSDRFDRYDEAAEKLKAAGRLYP 96 (445)
T ss_pred chHHHHHHHHHHHHHcCCC-CCccccHHHHHHHHHHHHHHHHHCCCEEE
Confidence 3478999999999999998 58889999999989999999999998 74
No 181
>PLN02907 glutamate-tRNA ligase
Probab=38.82 E-value=41 Score=42.52 Aligned_cols=46 Identities=24% Similarity=0.293 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeee
Q psy6851 103 MFKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYE 150 (948)
Q Consensus 103 l~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYe 150 (948)
-...+.+++.++++ |+. ++-.++.|+|.+.+- +++++||++|.||.
T Consensus 260 ~~~e~~~~I~~dl~wLG~~-~d~~~~qS~r~~~y~-~~a~~Li~~G~aY~ 307 (722)
T PLN02907 260 ESDEFVENILKDIETLGIK-YDAVTYTSDYFPQLM-EMAEKLIKEGKAYV 307 (722)
T ss_pred CChHHHHHHHHHHHHcCCC-CCCcccccccHHHHH-HHHHHHHHcCCeee
Confidence 33456677777777 885 477789999999999 79999999999996
No 182
>PLN02859 glutamine-tRNA ligase
Probab=36.61 E-value=46 Score=42.35 Aligned_cols=46 Identities=26% Similarity=0.281 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeee
Q psy6851 103 MFKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYE 150 (948)
Q Consensus 103 l~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYe 150 (948)
-...+.++..++++ |+. |+-..+.|+|.+++- ++..+||++|+||.
T Consensus 311 ~~~e~~~~I~edL~WLG~~-~d~~~~qSd~f~~~Y-~~A~~Li~~G~AY~ 358 (788)
T PLN02859 311 EKKEYIDHIEEIVEWMGWE-PFKITYTSDYFQELY-ELAVELIRRGHAYV 358 (788)
T ss_pred cchHHHHHHHHHHHHcCCC-CCCcccccHhHHHHH-HHHHHHHHcCCeEe
Confidence 34456677777777 864 577789999999999 79999999999996
No 183
>KOG1247|consensus
Probab=36.33 E-value=97 Score=36.97 Aligned_cols=45 Identities=22% Similarity=0.251 Sum_probs=37.8
Q ss_pred hHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcCC
Q psy6851 291 DLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGT 336 (948)
Q Consensus 291 d~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~~ 336 (948)
+..+...+.++...+.++| +-.-...||..++++.+.+|.|+.++
T Consensus 428 ~~~~~~dv~~~~~~y~~~m-e~vklr~~l~~~m~is~~GNqylQ~~ 472 (567)
T KOG1247|consen 428 DKKLLEDVNELLAKYVAAM-EKVKLREALKTAMEISRRGNQYLQEN 472 (567)
T ss_pred hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHHHhcc
Confidence 3445566677788899999 78899999999999999999999765
No 184
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=35.66 E-value=17 Score=41.61 Aligned_cols=67 Identities=19% Similarity=0.146 Sum_probs=38.3
Q ss_pred HHHHhhcCCCceeecCCCCCCCCCCh--hHHHHHhcc-CCC--------------C---CCC-ccccchhhhH--hhhHH
Q psy6851 824 VMASAVLGPQLDIHTGGVDLKFPHHD--NELAQAEGL-PTH--------------D---QEG-KELSKGLAKK--LKKLQ 880 (948)
Q Consensus 824 ~m~~~~lg~~~dih~GG~Dl~FPHH~--ne~aq~e~~-~~~--------------~---~~g-~kmsKsl~n~--l~~~~ 880 (948)
-||..+|=-.-||--||+|-. |||+ .++|+.-.. ++. . .+| .|||||.+|. |..-.
T Consensus 133 lqaaDIl~~~~d~vpvG~DQ~-~h~~laRdiA~~~n~~~~~~~~~~p~~~~~~~~~i~~L~g~~KMSKS~~~~I~L~D~p 211 (333)
T PRK12282 133 SQAADITAFKATLVPVGDDQL-PMIEQTREIVRRFNSLYGTDVLVEPEALLPEAGRLPGLDGKAKMSKSLGNAIYLSDDA 211 (333)
T ss_pred HHHHHHHhhCCCEEEeccccH-HHHHHHHHHHHHHhhhcCCccccCchhcccCCCcccCCCCCCcCCCCCCCeeeeeCCH
Confidence 455553333568888999974 6666 566654331 111 1 345 8999999886 22223
Q ss_pred HHHHHHHHHHH
Q psy6851 881 LTQEKKYNEYI 891 (948)
Q Consensus 881 ~~~~~~~~~~~ 891 (948)
.++.++++.-|
T Consensus 212 e~I~kKI~~A~ 222 (333)
T PRK12282 212 DTIKKKVMSMY 222 (333)
T ss_pred HHHHHHHHhCc
Confidence 45555555444
No 185
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=35.11 E-value=15 Score=42.59 Aligned_cols=71 Identities=20% Similarity=0.301 Sum_probs=33.5
Q ss_pred CCCCcccCCC-CCCCCchhHHHHHHHHhhcCCCceeecCCCCCCCCCChhHHHHHhc--cCCCC-----------CCCc-
Q psy6851 802 AGEPWWSSPW-GEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEG--LPTHD-----------QEGK- 866 (948)
Q Consensus 802 ~~ep~w~spw-g~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FPHH~ne~aq~e~--~~~~~-----------~~g~- 866 (948)
-|.-.+-+.. |.|-..|.++=. |=-.+|| +|+=-+|-||.=|=-.-..+.--| .+|.. ++|.
T Consensus 205 cG~~g~~~i~~g~gKL~WkvDW~-mRW~~lg--VdfEp~GKDH~~~GGS~d~~~~I~~~i~g~~pP~~~~YE~~~~~g~~ 281 (360)
T PF01921_consen 205 CGHEGEVDITGGNGKLQWKVDWP-MRWAALG--VDFEPFGKDHASPGGSYDTSKRIAREILGYEPPVPFPYEFFLDKGGG 281 (360)
T ss_dssp TS---EEETTTT-EEE-HHHHHH-HHHHHTT---SEEEEEHHHHCTTSHHHHHHHHHHHCC-----EEEEE--EEES---
T ss_pred CCCEEEEecCCCcccccCCCcCh-hhhhhcC--ceeccCCCccCCCCCChhhHHHHHHHHhCCCCCCCCCeeEEEeCCCc
Confidence 3444444443 357788888864 6667775 666678899887777767665544 44443 5555
Q ss_pred cccchhhhH
Q psy6851 867 ELSKGLAKK 875 (948)
Q Consensus 867 kmsKsl~n~ 875 (948)
|||||.||.
T Consensus 282 kmSsSkG~~ 290 (360)
T PF01921_consen 282 KMSSSKGNG 290 (360)
T ss_dssp ---------
T ss_pred ccccCCCCc
Confidence 999999999
No 186
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=34.70 E-value=12 Score=43.96 Aligned_cols=43 Identities=16% Similarity=0.192 Sum_probs=28.2
Q ss_pred CCceeecCCCCCCCCCCh--hHHHHHhcc---CC--CC----CCCccccchhhhH
Q psy6851 832 PQLDIHTGGVDLKFPHHD--NELAQAEGL---PT--HD----QEGKELSKGLAKK 875 (948)
Q Consensus 832 ~~~dih~GG~Dl~FPHH~--ne~aq~e~~---~~--~~----~~g~kmsKsl~n~ 875 (948)
...||-.||.|=. ||+. -|+|.--.. ++ .+ .+|.|||||.+|.
T Consensus 185 ~~~~iq~gG~DQ~-~ni~~grdl~~r~~~~~~~~lt~PlL~g~dG~KMsKS~~na 238 (410)
T PRK13354 185 EDVDLQIGGTDQW-GNILMGRDLQRKLEGEEQFGLTMPLLEGADGTKMGKSAGGA 238 (410)
T ss_pred CCCCEEEecHHHH-HHHHHHHHHHHHhCCCCceEeccCCccCCCCCccCCCCCCc
Confidence 3678888999865 4555 355554321 11 11 6889999999987
No 187
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=34.05 E-value=57 Score=40.41 Aligned_cols=44 Identities=23% Similarity=0.105 Sum_probs=34.8
Q ss_pred HHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeee
Q psy6851 106 METDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYE 150 (948)
Q Consensus 106 ~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYe 150 (948)
.+.+++.++++ |+..-.-..+.|+|.+.+- +++++||++|+||.
T Consensus 102 e~~d~IleDL~WLGl~wDe~~~~QSdr~d~y~-e~a~~Li~~G~AY~ 147 (601)
T PTZ00402 102 HFEQAILDDLATLGVSWDVGPTYSSDYMDLMY-EKAEELIKKGLAYC 147 (601)
T ss_pred HHHHHHHHHHHHCCCCCCCceeeccccHHHHH-HHHHHHHHcCCEEE
Confidence 35666777777 8844323668999999999 79999999999994
No 188
>PLN02859 glutamine-tRNA ligase
Probab=33.96 E-value=34 Score=43.49 Aligned_cols=52 Identities=15% Similarity=0.083 Sum_probs=44.5
Q ss_pred cccccccccHHHHHHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cc
Q psy6851 619 TDNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KK 674 (948)
Q Consensus 619 ~~~~~f~~~~~~~~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~ 674 (948)
||++- -...|++...+|++.||+. |+...+.|+|.+.+-+++.+||++|. |.
T Consensus 306 Tdp~r---~~~e~~~~I~edL~WLG~~-~d~~~~qSd~f~~~Y~~A~~Li~~G~AY~ 358 (788)
T PLN02859 306 TNPEA---EKKEYIDHIEEIVEWMGWE-PFKITYTSDYFQELYELAVELIRRGHAYV 358 (788)
T ss_pred CCCCc---cchHHHHHHHHHHHHcCCC-CCCcccccHhHHHHHHHHHHHHHcCCeEe
Confidence 56543 4468999999999999986 57788999999999999999999999 85
No 189
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=33.21 E-value=39 Score=38.37 Aligned_cols=47 Identities=9% Similarity=-0.109 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cc
Q psy6851 628 PKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KK 674 (948)
Q Consensus 628 ~~~~~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~ 674 (948)
...|.+...+|+..||+....-..+-|++.....+++++|+++|. |.
T Consensus 49 ~~~~~~~i~~~L~wlGl~~D~~~~~QS~r~~~Y~~~~~~L~~~g~aY~ 96 (314)
T PF00749_consen 49 RPEFYDAILEDLRWLGLEWDYGPYYQSDRLEIYQEAAEKLIDKGKAYP 96 (314)
T ss_dssp HHHHHHHHHHHHHHHT---STCEEEGGGGHHHHHHHHHHHHHTTSEEE
T ss_pred hhhHHHHHHhheeEEEEecCCeEEeHHHHHHHHHHHHHHHhhcCCCcc
Confidence 468889999999999999865788899999999999999999988 74
No 190
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=32.62 E-value=45 Score=36.74 Aligned_cols=46 Identities=15% Similarity=0.206 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cc
Q psy6851 628 PKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KK 674 (948)
Q Consensus 628 ~~~~~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~ 674 (948)
...|++...+|++.||+.. |-..+-|++++..-+++++|+++|. |.
T Consensus 49 ~~~~~~~I~~dL~wlGl~w-D~~~~QS~r~~~Y~~~~~~L~~~g~aY~ 95 (238)
T cd00807 49 EEEYVDSIKEDVKWLGIKP-YKVTYASDYFDQLYEYAEQLIKKGKAYV 95 (238)
T ss_pred chHHHHHHHHHHHHcCCCC-CCceecccCHHHHHHHHHHHHHcCCeec
Confidence 4578999999999999975 5677899999999999999999999 87
No 191
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=32.41 E-value=37 Score=40.83 Aligned_cols=49 Identities=12% Similarity=-0.147 Sum_probs=42.6
Q ss_pred ccHHHHHHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cc
Q psy6851 626 TLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KK 674 (948)
Q Consensus 626 ~~~~~~~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~ 674 (948)
.-...|++.-++||+.||+..-.-..+.|++.+..-+++++|+++|. |.
T Consensus 55 R~~~e~~~~I~~~L~WLGl~wde~~~~QS~r~~~Y~~~~~~Li~~G~AY~ 104 (472)
T COG0008 55 RETPEAEDAILEDLEWLGLDWDEGPYYQSERFDIYYEYAEKLIEKGKAYV 104 (472)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCceeehhhhHHHHHHHHHHHHHCCCeEE
Confidence 34467889999999999998644489999999999999999999999 84
No 192
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=32.26 E-value=71 Score=35.82 Aligned_cols=43 Identities=19% Similarity=0.163 Sum_probs=32.3
Q ss_pred HHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeee
Q psy6851 107 ETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYE 150 (948)
Q Consensus 107 ~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYe 150 (948)
+.+.+.++++ |+..-...-+-|++++..- +++++|+++|.||.
T Consensus 51 ~~~~I~~dL~wLGl~wDe~~~~QS~r~~~Y~-~~~~~L~~~G~aY~ 95 (272)
T TIGR03838 51 AADDILRTLEAYGLHWDGEVVYQSQRHALYQ-AALDRLLAAGLAYP 95 (272)
T ss_pred HHHHHHHHHHHcCCCCCCCeeeeeCCHHHHH-HHHHHHHHcCCEEe
Confidence 3445555555 7754333348999999998 79999999999994
No 193
>KOG0434|consensus
Probab=32.21 E-value=24 Score=43.99 Aligned_cols=42 Identities=29% Similarity=0.569 Sum_probs=32.0
Q ss_pred CchhHHHHHHHHhhcCCC--ceeecCCCCCCCCCChhHHHHHhccCCCCCCCccccchhhhH
Q psy6851 816 PGWHIECSVMASAVLGPQ--LDIHTGGVDLKFPHHDNELAQAEGLPTHDQEGKELSKGLAKK 875 (948)
Q Consensus 816 PgWHieCs~m~~~~lg~~--~dih~GG~Dl~FPHH~ne~aq~e~~~~~~~~g~kmsKsl~n~ 875 (948)
-||----.+++...||.+ --+-|-|+=|. -+|+||||+|+|.
T Consensus 566 RGWFYTL~VlsT~LF~kppfkNvIvnGlVLA------------------eDG~KMSKrlkNY 609 (1070)
T KOG0434|consen 566 RGWFYTLLVLSTALFGKPPFKNVIVNGLVLA------------------EDGKKMSKRLKNY 609 (1070)
T ss_pred cchhhHHHHHHHHHcCCCcchheeEeeeEEe------------------cccHHHhhhhhcC
Confidence 589999999999999965 23334444321 4799999999998
No 194
>TIGR03272 methan_mark_6 putative methanogenesis marker protein 6. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=31.96 E-value=21 Score=35.96 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=16.1
Q ss_pred cCCCCCCCcccCCCCCCCC-CCccee
Q psy6851 190 RGYPPWPARIEGLADETPN-RLKYHI 214 (948)
Q Consensus 190 ~wespWg~~~~~m~~~~~G-RPGWHI 214 (948)
+|+|||..++ |-+.-|.| |||+|=
T Consensus 63 RGfp~gD~RR-CRa~RGGgPRpGFhq 87 (132)
T TIGR03272 63 RGFPPGDPRR-CRANRGGGPRPGFHQ 87 (132)
T ss_pred CCCCCCchHH-HhhccCCCCCCChHH
Confidence 4788888654 44444556 999883
No 195
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=31.76 E-value=76 Score=35.18 Aligned_cols=15 Identities=7% Similarity=-0.029 Sum_probs=11.7
Q ss_pred Eccc-chhhcchh-HHH
Q psy6851 245 VHLS-QKQQSLKL-VVI 259 (948)
Q Consensus 245 i~ge-KMSKSLGN-~vt 259 (948)
++|. |||||.+| .|.
T Consensus 193 l~G~~KMSKS~~ns~I~ 209 (292)
T PF00579_consen 193 LDGQKKMSKSDPNSAIF 209 (292)
T ss_dssp TTSSSBTTTTTTGGS-B
T ss_pred cCCccccCccCCccEEE
Confidence 5788 99999999 443
No 196
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=30.46 E-value=12 Score=42.80 Aligned_cols=16 Identities=13% Similarity=0.090 Sum_probs=12.8
Q ss_pred EcccchhhcchhHHHH
Q psy6851 245 VHLSQKQQSLKLVVIM 260 (948)
Q Consensus 245 i~geKMSKSLGN~vti 260 (948)
++|.|||||.+|.|.+
T Consensus 198 Ldg~KMSKS~~n~I~L 213 (332)
T PRK12556 198 LDGRKMSKSYGNVIPL 213 (332)
T ss_pred CCCCCCCCCCCCcccc
Confidence 4678999999987644
No 197
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=30.24 E-value=51 Score=37.42 Aligned_cols=48 Identities=8% Similarity=-0.136 Sum_probs=41.3
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cc
Q psy6851 627 LPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KK 674 (948)
Q Consensus 627 ~~~~~~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~ 674 (948)
-...|++...+|++.||+..-.-..+-|++++...+++++|+++|. |.
T Consensus 52 ~~~~~~~~I~~dL~wlGl~wDe~~~~QS~r~~~Y~~~~~~L~~~G~aY~ 100 (299)
T PRK05710 52 EVPGAADAILADLEWLGLHWDGPVLYQSQRHDAYRAALDRLRAQGLVYP 100 (299)
T ss_pred cchHHHHHHHHHHHHCCCCCCCCceEeeccHHHHHHHHHHHHHCCCcee
Confidence 4468899999999999998643466789999999999999999998 74
No 198
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=29.87 E-value=27 Score=39.89 Aligned_cols=36 Identities=14% Similarity=0.127 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCCeeecccccHHHHHHH
Q psy6851 628 PKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVAS 663 (948)
Q Consensus 628 ~~~~~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~ 663 (948)
.+.+..+...|.-++|+.|--...-+--++|++-++
T Consensus 61 l~~~~~e~~a~~LA~GiDP~k~~if~QS~v~e~~eL 96 (314)
T COG0180 61 LRQATREVAADYLAVGLDPEKSTIFLQSEVPEHAEL 96 (314)
T ss_pred HHHHHHHHHHHHHHhccCccccEEEEccCchHHHHH
Confidence 466777888888899988744344444566665554
No 199
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=28.40 E-value=78 Score=38.20 Aligned_cols=43 Identities=26% Similarity=0.099 Sum_probs=34.4
Q ss_pred HHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeee
Q psy6851 107 ETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYE 150 (948)
Q Consensus 107 ~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYe 150 (948)
+.++..++++ |+..=.-..+.|++.+..- +++++||++|.||.
T Consensus 60 ~~~~I~~~L~WLGl~wde~~~~QS~r~~~Y~-~~~~~Li~~G~AY~ 104 (472)
T COG0008 60 AEDAILEDLEWLGLDWDEGPYYQSERFDIYY-EYAEKLIEKGKAYV 104 (472)
T ss_pred HHHHHHHHHHhcCCCCCCceeehhhhHHHHH-HHHHHHHHCCCeEE
Confidence 4455666666 8855443789999999999 79999999999995
No 200
>PF03546 Treacle: Treacher Collins syndrome protein Treacle; InterPro: IPR003993 Treacher Collins Syndrome (TCS) is an autosomal dominant disorder of craniofacial development, the features of which include conductive hearing loss and cleft palate [, ]; it is the most common of the human mandibulo-facial dysostosis disorders []. The TCS locus has been mapped to human chromosome 5q31.3-32 and the mutated gene identified (TCOF1) []. To date, 35 mutations have been reported in TCOF1, all but one of which result in the introduction of a premature-termination codon into the predicted protein, Treacle. The observed mutational spectrum supports the hypothesis that TCS results from haploinsufficiency. Treacle is a low complexity protein of 1,411 amino acids whose predicted protein structure contains a set of highly polar repeated motifs []. These motifs are common to nucleolar trafficking proteins in other species and are predicted to be phosphorylated by casein kinase. In concert with this observation, the full-length TCOF1 protein sequence also contains putative nuclear and nucleolar localisation signals []. Throughout the open reading frame are found mutations in TCS families and several polymorphisms. It has thus been suggested that TCS results from defects in a nucleolar trafficking protein that is critically required during human craniofacial development.
Probab=27.31 E-value=62 Score=39.05 Aligned_cols=22 Identities=55% Similarity=0.755 Sum_probs=12.9
Q ss_pred CCCCCCCCCCCCcccc--cCCCCc
Q psy6851 749 SSSDDDSSSEDEKPAV--KAPAKP 770 (948)
Q Consensus 749 ssSd~~Sssede~p~~--k~~~~~ 770 (948)
+||+++|+||||.|+. .+.+|+
T Consensus 220 eSSEesS~SeeEa~aa~t~aqaKp 243 (519)
T PF03546_consen 220 ESSEESSDSEEEAPAAATPAQAKP 243 (519)
T ss_pred ccccccccccccccccccchhccc
Confidence 3556667778886653 344444
No 201
>KOG1148|consensus
Probab=26.92 E-value=95 Score=38.44 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeee
Q psy6851 100 PSEMFKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYE 150 (948)
Q Consensus 100 ~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYe 150 (948)
+..--.+|..+..++.+ |- .|.-+|-.|+|.+++- ++...||.+|.||+
T Consensus 292 PEkEee~yf~sI~e~V~WLG~-~P~kvTysSDyFdqLy-~~av~LIrkG~AYV 342 (764)
T KOG1148|consen 292 PEKEEEEYFESIKEMVAWLGF-EPYKVTYSSDYFDQLY-ELAVELIRKGKAYV 342 (764)
T ss_pred cchhhHHHHHHHHHHHHHhCC-CceeeecchhHHHHHH-HHHHHHHhcCceeE
Confidence 33334455666666555 65 5788899999999999 79999999999997
No 202
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=26.74 E-value=13 Score=44.09 Aligned_cols=16 Identities=6% Similarity=0.052 Sum_probs=13.0
Q ss_pred EcccchhhcchhHHHH
Q psy6851 245 VHLSQKQQSLKLVVIM 260 (948)
Q Consensus 245 i~geKMSKSLGN~vti 260 (948)
++|.|||||.+|.|.|
T Consensus 198 Ldg~KMSKS~~n~I~L 213 (431)
T PRK12284 198 LDGRKMSKSYDNTIPL 213 (431)
T ss_pred CCCccccCCCCCEeee
Confidence 4678999999997744
No 203
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=26.64 E-value=79 Score=37.88 Aligned_cols=43 Identities=19% Similarity=0.035 Sum_probs=34.2
Q ss_pred HHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeee
Q psy6851 106 METDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYE 150 (948)
Q Consensus 106 ~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYe 150 (948)
.+.+.+.++|+ ||. ++...+-|+.++.+- +++++|+++|+||.
T Consensus 52 ~~~~~I~e~L~wLGI~-~De~y~QSer~~~y~-~~~e~L~e~G~AY~ 96 (445)
T PRK12558 52 EYADAIAEDLKWLGIN-WDRTFRQSDRFDRYD-EAAEKLKAAGRLYP 96 (445)
T ss_pred HHHHHHHHHHHHcCCC-CCccccHHHHHHHHH-HHHHHHHHCCCEEE
Confidence 34555555555 885 688899999998777 79999999999995
No 204
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=26.62 E-value=41 Score=36.97 Aligned_cols=58 Identities=26% Similarity=0.394 Sum_probs=0.0
Q ss_pred CCCCCchhHHHHHHHHhhcCCCceeecCCCCCCC------CCChhHHHHHhccCCCC-----------CCCccccchhhh
Q psy6851 812 GEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKF------PHHDNELAQAEGLPTHD-----------QEGKELSKGLAK 874 (948)
Q Consensus 812 g~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~F------PHH~ne~aq~e~~~~~~-----------~~g~kmsKsl~n 874 (948)
|.|.|..|+-|++ |.|.=||+++. +|-.--++-.+++.-.. .+|.||||+.++
T Consensus 100 gdg~ptY~~a~~v----------DD~~~~ithViRG~D~~~~t~~q~~l~~aLg~~~p~~~h~pll~~~~g~KLSKR~~~ 169 (239)
T cd00808 100 GDGFPTYHLANVV----------DDHLMGITHVIRGEEHLSSTPKQILLYEALGWEPPKFAHLPLILNPDGKKLSKRKGD 169 (239)
T ss_pred CCCCcccccHHHH----------hHHhcCCCEEEEChhhhhChHHHHHHHHHcCCCCCceEeeccccCCCCCcccCCCCC
Q ss_pred H-hhhH
Q psy6851 875 K-LKKL 879 (948)
Q Consensus 875 ~-l~~~ 879 (948)
. |..+
T Consensus 170 ~~l~~l 175 (239)
T cd00808 170 TSISDY 175 (239)
T ss_pred ccHHHH
No 205
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=25.96 E-value=67 Score=38.60 Aligned_cols=48 Identities=8% Similarity=-0.150 Sum_probs=41.5
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cc
Q psy6851 627 LPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KK 674 (948)
Q Consensus 627 ~~~~~~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~ 674 (948)
-...|++...+|++.||+..-.-..+-|++++...+++++|+++|. |.
T Consensus 48 ~~~~~~~~i~~~L~wlGl~~de~~~~QS~r~~~y~~~~~~L~~~g~aY~ 96 (470)
T TIGR00464 48 NIEEAEEAILEGLKWLGISWDEGPYYQSQRLDIYKKYAKELLEEGLAYR 96 (470)
T ss_pred CChHHHHHHHHHHHHCCCCCCCCeeehhCCHHHHHHHHHHHHHcCCEEe
Confidence 3457999999999999998643567889999999999999999998 74
No 206
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=24.59 E-value=40 Score=38.48 Aligned_cols=67 Identities=19% Similarity=0.265 Sum_probs=40.6
Q ss_pred HHHHHHhhcCCCceeecCCCCCCCCCCh--hHHHHHhccC------CC---CCCCc--cccchh-hhH--hhhHHHHHHH
Q psy6851 822 CSVMASAVLGPQLDIHTGGVDLKFPHHD--NELAQAEGLP------TH---DQEGK--ELSKGL-AKK--LKKLQLTQEK 885 (948)
Q Consensus 822 Cs~m~~~~lg~~~dih~GG~Dl~FPHH~--ne~aq~e~~~------~~---~~~g~--kmsKsl-~n~--l~~~~~~~~~ 885 (948)
-.-||..+|--..|+--||+|=. ||++ -|+|+.-.+. .. ...|. |||||. +|. |..--.+..+
T Consensus 157 P~lqaaDil~~~ad~vpvG~DQ~-~h~~l~Rdia~~~n~~~p~~l~~~~l~~L~g~~~KMSKS~p~~~I~L~D~~~~I~~ 235 (329)
T PRK08560 157 PLMQVADIFYLDVDIAVGGMDQR-KIHMLAREVLPKLGYKKPVCIHTPLLTGLDGGGIKMSKSKPGSAIFVHDSPEEIRR 235 (329)
T ss_pred HHHHHHHHHHhCCCEEEechhHH-HHHHHHHHhhHhcCCCCceEEEcCccCCCCCCCCCCcCCCCCCeecccCCHHHHHH
Confidence 34577777777888888999976 6665 3555442211 00 05666 999999 777 3333344444
Q ss_pred HHHH
Q psy6851 886 KYNE 889 (948)
Q Consensus 886 ~~~~ 889 (948)
+++.
T Consensus 236 KI~k 239 (329)
T PRK08560 236 KIKK 239 (329)
T ss_pred HHHh
Confidence 4443
No 207
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=24.24 E-value=71 Score=38.16 Aligned_cols=47 Identities=11% Similarity=-0.127 Sum_probs=42.0
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cc
Q psy6851 627 LPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KK 674 (948)
Q Consensus 627 ~~~~~~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~ 674 (948)
-...|++...+||+.||+.. |-..+-|++++..-+++++|+++|. |.
T Consensus 46 ~~~e~~~~I~~~L~WlGl~w-De~y~QSeR~~~Y~~~a~~Li~~G~AY~ 93 (433)
T PRK12410 46 NIEGKDKEILEILNLFGISW-DKLVYQSENLKFHRQMAEKLLSEKKAFA 93 (433)
T ss_pred CChHHHHHHHHHHHHcCCCC-CCCeehhccHHHHHHHHHHHHHcCCeee
Confidence 45689999999999999975 7778999999999999999999998 74
No 208
>PF09875 DUF2102: Uncharacterized protein conserved in archaea (DUF2102); InterPro: IPR012025 The exact functionof this protein unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=23.80 E-value=38 Score=32.96 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=15.6
Q ss_pred cCCCCCCCcccCCCCCCCC-CCccee
Q psy6851 190 RGYPPWPARIEGLADETPN-RLKYHI 214 (948)
Q Consensus 190 ~wespWg~~~~~m~~~~~G-RPGWHI 214 (948)
+|+|||..++ |-+.-+.| |||+|-
T Consensus 64 RGFppgD~RR-CRa~rgGgpRpGfh~ 88 (104)
T PF09875_consen 64 RGFPPGDPRR-CRATRGGGPRPGFHQ 88 (104)
T ss_pred CCCCCCccHH-hhhccCCCCCCChHH
Confidence 4778888654 33444456 999983
No 209
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=23.79 E-value=38 Score=39.96 Aligned_cols=13 Identities=23% Similarity=0.524 Sum_probs=11.5
Q ss_pred CCCccccchhhhH
Q psy6851 863 QEGKELSKGLAKK 875 (948)
Q Consensus 863 ~~g~kmsKsl~n~ 875 (948)
.+|+|||||.+|.
T Consensus 260 Ldg~KMSKS~~n~ 272 (398)
T PRK12283 260 LDGQKMSKSYGNT 272 (398)
T ss_pred CCCCcCCCCCCCe
Confidence 5789999999987
No 210
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=23.51 E-value=1.2e+02 Score=33.64 Aligned_cols=43 Identities=26% Similarity=0.390 Sum_probs=34.4
Q ss_pred HHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeee
Q psy6851 106 METDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYE 150 (948)
Q Consensus 106 ~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYe 150 (948)
.+.+.+.++++ |+. ++-..+-|++++..- +++++|+++|.||.
T Consensus 51 ~~~~~I~~dL~wlGl~-wD~~~~QS~r~~~Y~-~~~~~L~~~g~aY~ 95 (238)
T cd00807 51 EYVDSIKEDVKWLGIK-PYKVTYASDYFDQLY-EYAEQLIKKGKAYV 95 (238)
T ss_pred HHHHHHHHHHHHcCCC-CCCceecccCHHHHH-HHHHHHHHcCCeec
Confidence 35556666666 774 455678999999999 79999999999998
No 211
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=23.37 E-value=1.2e+02 Score=34.51 Aligned_cols=43 Identities=19% Similarity=-0.038 Sum_probs=31.2
Q ss_pred HHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeee
Q psy6851 107 ETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYE 150 (948)
Q Consensus 107 ~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYe 150 (948)
+.+.+.++++ |+....-..+-|++....- +++++|+++|.||.
T Consensus 52 ~~~~i~~~L~wlGl~~D~~~~~QS~r~~~Y~-~~~~~L~~~g~aY~ 96 (314)
T PF00749_consen 52 FYDAILEDLRWLGLEWDYGPYYQSDRLEIYQ-EAAEKLIDKGKAYP 96 (314)
T ss_dssp HHHHHHHHHHHHT---STCEEEGGGGHHHHH-HHHHHHHHTTSEEE
T ss_pred HHHHHHhheeEEEEecCCeEEeHHHHHHHHH-HHHHHHhhcCCCcc
Confidence 3444445555 8866546677899999999 79999999999995
No 212
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=22.84 E-value=18 Score=42.61 Aligned_cols=16 Identities=6% Similarity=-0.012 Sum_probs=13.1
Q ss_pred EcccchhhcchhHHHH
Q psy6851 245 VHLSQKQQSLKLVVIM 260 (948)
Q Consensus 245 i~geKMSKSLGN~vti 260 (948)
++|.|||||.+|.|.+
T Consensus 260 Ldg~KMSKS~~n~I~L 275 (398)
T PRK12283 260 LDGQKMSKSYGNTIGL 275 (398)
T ss_pred CCCCcCCCCCCCeeeC
Confidence 5788999999987654
No 213
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=22.74 E-value=81 Score=38.47 Aligned_cols=48 Identities=8% Similarity=-0.206 Sum_probs=41.2
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cc
Q psy6851 627 LPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KK 674 (948)
Q Consensus 627 ~~~~~~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~ 674 (948)
-...|++..++||+.||+..-.-.-+-|+.++..-+++++|+++|. |.
T Consensus 51 ~~~~~~~~i~~~L~WLGl~wDe~py~QSeR~~~Y~~~a~~Li~~G~AY~ 99 (513)
T PRK14895 51 STKEAVEAIFSGLKWLGLDWNGEVIFQSKRNNLYKEAALKLLQNGKAYY 99 (513)
T ss_pred cChHHHHHHHHHHHHcCCCCCCCceeEeCcHHHHHHHHHHHHHcCCeEE
Confidence 4568999999999999998643456889999999999999999998 74
No 214
>PLN02886 aminoacyl-tRNA ligase
Probab=21.99 E-value=40 Score=39.61 Aligned_cols=32 Identities=34% Similarity=0.415 Sum_probs=24.3
Q ss_pred HHHHHhhcCCCceeecCCCCCCCCCCh--hHHHHH
Q psy6851 823 SVMASAVLGPQLDIHTGGVDLKFPHHD--NELAQA 855 (948)
Q Consensus 823 s~m~~~~lg~~~dih~GG~Dl~FPHH~--ne~aq~ 855 (948)
.-||..+|=.+.||=-+|+|=+ |||+ .|||+.
T Consensus 174 vLqAADILl~~a~~VPVG~DQ~-qH~eLtRdiA~r 207 (389)
T PLN02886 174 VLMASDILLYQADLVPVGEDQK-QHLELTRDIAER 207 (389)
T ss_pred HHHHhhhhhcCCCeEEEccchH-HHHHHHHHHHHH
Confidence 4688888877888888888876 7777 566665
No 215
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=21.23 E-value=22 Score=41.95 Aligned_cols=19 Identities=5% Similarity=-0.052 Sum_probs=14.8
Q ss_pred EEcccchhhcchhHHHHHH
Q psy6851 244 RVHLSQKQQSLKLVVIMKE 262 (948)
Q Consensus 244 ~i~geKMSKSLGN~vti~e 262 (948)
..+|.|||||.||.|.+.+
T Consensus 225 g~dG~KMsKS~~naI~L~d 243 (410)
T PRK13354 225 GADGTKMGKSAGGAIWLDP 243 (410)
T ss_pred CCCCCccCCCCCCceeccC
Confidence 3578999999999875543
No 216
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=20.35 E-value=55 Score=36.52 Aligned_cols=66 Identities=21% Similarity=0.205 Sum_probs=40.3
Q ss_pred HHHHHhhcCCCceeecCCCCCCCCCCh--hHHHHHhcc-----CCCC------------CCC--ccccchhh-hH--hhh
Q psy6851 823 SVMASAVLGPQLDIHTGGVDLKFPHHD--NELAQAEGL-----PTHD------------QEG--KELSKGLA-KK--LKK 878 (948)
Q Consensus 823 s~m~~~~lg~~~dih~GG~Dl~FPHH~--ne~aq~e~~-----~~~~------------~~g--~kmsKsl~-n~--l~~ 878 (948)
.-|+..+|=...|+--+|.|- -||++ -|+|+.-.. +..+ ..| .|||||.+ |. |..
T Consensus 127 ~lqaaDil~~~~~~vpvG~DQ-~~h~~l~Rdia~r~n~~~~~~~~~P~~l~~~~~~i~~l~g~~~KMSKS~~~~~I~L~d 205 (280)
T cd00806 127 VLQAADILLYKACLVPVGIDQ-DPHLELTRDIARRFNKLYGEIFPKPAALLSKGAFLPGLQGPSKKMSKSDPNNAIFLTD 205 (280)
T ss_pred HHHHhhhhhccCCEEeecccc-HHHHHHHHHHHHHhccccccccCCCeeeccCCCccccCCCCCCcccCCCCCCeEEeeC
Confidence 456666665566777779997 47877 577776541 1122 334 59999998 66 433
Q ss_pred HHHHHHHHHHH
Q psy6851 879 LQLTQEKKYNE 889 (948)
Q Consensus 879 ~~~~~~~~~~~ 889 (948)
--.+.++++++
T Consensus 206 ~~~~i~~KI~~ 216 (280)
T cd00806 206 SPKEIKKKIMK 216 (280)
T ss_pred CHHHHHHHHHh
Confidence 33445554443
No 217
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=20.23 E-value=65 Score=37.56 Aligned_cols=52 Identities=25% Similarity=0.397 Sum_probs=34.2
Q ss_pred HHHHHHHhhcCCCc------eeecCCCCCCCCCCh--hHHHHHh----ccCCCC----------CCCccccchhhh
Q psy6851 821 ECSVMASAVLGPQL------DIHTGGVDLKFPHHD--NELAQAE----GLPTHD----------QEGKELSKGLAK 874 (948)
Q Consensus 821 eCs~m~~~~lg~~~------dih~GG~Dl~FPHH~--ne~aq~e----~~~~~~----------~~g~kmsKsl~n 874 (948)
=.+.||..+|=+++ ++--+|+|=. ||++ -++|+.- ++. .+ .+|.|||||..|
T Consensus 185 YP~lQaADil~~~~~~~~~~~lvPvG~DQ~-~h~~ltRdiA~r~n~~~gf~-~P~~l~~~~lpgL~G~KMSkS~~~ 258 (368)
T PRK12285 185 YPATQAADILHPQLEEGPKPTLVPVGIDQD-PHIRLTRDIAERLHGGYGFI-KPSSTYHKFMPGLTGGKMSSSKPE 258 (368)
T ss_pred hhHHHHHHHHhhcccccCCceEEEeccchH-HHHHHHHHHHHHHhhhcCCC-CchhHhhhcccCCCCCcCCCCCCC
Confidence 34567777765444 4777899974 7877 4666655 322 12 678999999854
Done!