Query psy6851
Match_columns 948
No_of_seqs 608 out of 3066
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 20:02:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6851.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6851hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tqo_A Cysteinyl-tRNA syntheta 100.0 3E-71 1E-75 630.8 12.5 248 405-875 3-277 (462)
2 3sp1_A Cysteinyl-tRNA syntheta 100.0 1.2E-68 4E-73 613.3 6.3 257 397-875 14-307 (501)
3 3tqo_A Cysteinyl-tRNA syntheta 100.0 9.3E-64 3.2E-68 569.3 15.2 316 95-438 83-460 (462)
4 3sp1_A Cysteinyl-tRNA syntheta 100.0 4.1E-60 1.4E-64 542.8 13.6 309 93-437 108-498 (501)
5 1li5_A Cysrs, cysteinyl-tRNA s 100.0 3.6E-59 1.2E-63 532.4 11.1 246 407-875 2-274 (461)
6 1li5_A Cysrs, cysteinyl-tRNA s 100.0 2.9E-53 9.8E-58 483.9 14.8 316 95-437 80-458 (461)
7 3c8z_A Cysteinyl-tRNA syntheta 100.0 6.1E-53 2.1E-57 475.0 10.5 250 405-875 19-299 (414)
8 3c8z_A Cysteinyl-tRNA syntheta 100.0 3E-42 1E-46 388.1 15.1 250 94-359 96-413 (414)
9 1irx_A Lysyl-tRNA synthetase; 99.9 3.8E-28 1.3E-32 280.8 -2.6 151 624-875 100-287 (523)
10 2csx_A Methionyl-tRNA syntheta 99.9 3.6E-26 1.2E-30 261.8 0.9 190 627-875 72-303 (497)
11 2d5b_A Methionyl-tRNA syntheta 99.9 5.4E-26 1.9E-30 260.0 2.2 58 627-685 70-130 (500)
12 2csx_A Methionyl-tRNA syntheta 99.9 7.5E-24 2.6E-28 242.6 12.8 229 97-335 66-418 (497)
13 2d5b_A Methionyl-tRNA syntheta 99.9 8.7E-24 3E-28 241.8 9.1 235 97-335 64-420 (500)
14 2x1l_A Methionyl-tRNA syntheta 99.9 2.8E-24 9.5E-29 247.7 1.7 202 627-875 79-318 (524)
15 2x1l_A Methionyl-tRNA syntheta 99.8 1.1E-21 3.6E-26 226.2 11.2 233 97-335 73-438 (524)
16 1iq0_A Arginyl-tRNA synthetase 99.8 6.3E-22 2.2E-26 232.2 1.1 165 625-879 213-408 (592)
17 1iq0_A Arginyl-tRNA synthetase 99.8 2.7E-20 9.3E-25 218.4 14.1 246 94-360 207-588 (592)
18 3u1f_A Methionyl-tRNA syntheta 99.8 6.2E-20 2.1E-24 212.0 13.1 237 96-335 69-450 (542)
19 1qtq_A GLNRS, protein (glutami 99.8 1.1E-20 3.8E-25 218.7 5.5 175 630-875 76-275 (553)
20 3aii_A Glutamyl-tRNA synthetas 99.8 7.9E-21 2.7E-25 220.0 0.9 170 630-875 146-337 (553)
21 2hz7_A Glutaminyl-tRNA synthet 99.8 1.5E-20 5.2E-25 225.7 1.6 175 630-875 116-315 (851)
22 1rqg_A Methionyl-tRNA syntheta 99.7 5.4E-19 1.8E-23 211.7 7.4 59 627-686 70-131 (722)
23 1rqg_A Methionyl-tRNA syntheta 99.7 6.6E-18 2.2E-22 202.4 16.4 230 97-336 64-473 (722)
24 3u1f_A Methionyl-tRNA syntheta 99.7 2.5E-19 8.4E-24 207.0 3.2 59 627-686 76-137 (542)
25 1irx_A Lysyl-tRNA synthetase; 99.7 1.7E-19 5.8E-24 208.7 -1.4 157 101-282 101-324 (523)
26 2zue_A Arginyl-tRNA synthetase 99.7 4.2E-18 1.4E-22 201.2 2.5 63 622-685 240-310 (629)
27 2zue_A Arginyl-tRNA synthetase 99.6 1.8E-16 6.1E-21 187.4 10.5 247 95-360 236-625 (629)
28 1nzj_A Hypothetical protein YA 99.6 2.6E-16 9E-21 170.9 6.5 161 631-879 56-241 (298)
29 2cfo_A Glutamyl-tRNA synthetas 99.6 1.4E-16 4.7E-21 183.5 4.5 200 630-893 51-276 (492)
30 4dlp_A Aminoacyl-tRNA syntheta 99.6 1.3E-15 4.6E-20 176.3 12.7 237 94-335 83-449 (536)
31 4dlp_A Aminoacyl-tRNA syntheta 99.6 7.8E-16 2.7E-20 178.3 6.8 59 627-686 92-153 (536)
32 3aii_A Glutamyl-tRNA synthetas 99.6 3.7E-16 1.3E-20 181.2 2.0 133 104-256 144-336 (553)
33 3h99_A Methionyl-tRNA syntheta 99.6 1.7E-14 5.7E-19 168.1 14.9 111 222-334 303-469 (560)
34 3kfl_A Methionyl-tRNA syntheta 99.5 1.2E-14 4E-19 169.8 11.9 240 92-335 82-466 (564)
35 1f7u_A Arginyl-tRNA synthetase 99.5 4.5E-14 1.5E-18 166.4 12.7 231 100-360 266-603 (607)
36 1f7u_A Arginyl-tRNA synthetase 99.5 1.1E-15 3.7E-20 180.1 -2.0 61 624-685 266-328 (607)
37 3h99_A Methionyl-tRNA syntheta 99.5 7E-15 2.4E-19 171.2 4.7 59 627-686 85-146 (560)
38 1qtq_A GLNRS, protein (glutami 99.5 5.9E-15 2E-19 171.2 1.8 141 102-257 72-275 (553)
39 2hz7_A Glutaminyl-tRNA synthet 99.4 1.6E-14 5.6E-19 173.9 2.2 139 105-257 115-315 (851)
40 3kfl_A Methionyl-tRNA syntheta 99.4 7.5E-14 2.6E-18 163.0 5.4 59 627-686 93-154 (564)
41 1wkb_A Leucyl-tRNA synthetase; 99.3 2.6E-12 8.9E-17 155.7 8.7 114 221-335 605-770 (810)
42 1wz2_A Leucyl-tRNA synthetase; 99.3 9.2E-12 3.1E-16 153.7 13.5 114 221-335 605-770 (967)
43 1nzj_A Hypothetical protein YA 99.1 1.2E-11 4.1E-16 134.5 2.3 119 107-257 56-236 (298)
44 2cfo_A Glutamyl-tRNA synthetas 99.1 2.4E-11 8.2E-16 140.1 3.1 130 107-263 52-260 (492)
45 1ile_A Ilers, isoleucyl-tRNA s 98.8 5.2E-09 1.8E-13 127.3 8.1 113 221-334 546-721 (821)
46 1gax_A Valrs, valyl-tRNA synth 98.6 2.3E-08 8E-13 122.2 7.5 113 221-334 483-651 (862)
47 4arc_A Leucine--tRNA ligase; l 98.6 4E-08 1.4E-12 120.3 8.6 84 249-333 639-760 (880)
48 1ffy_A Isoleucyl-tRNA syntheta 98.5 9.2E-08 3.1E-12 117.8 7.0 112 221-334 550-722 (917)
49 3fnr_A Arginyl-tRNA synthetase 98.5 1.6E-07 5.3E-12 107.9 8.4 196 137-361 177-451 (464)
50 1wz2_A Leucyl-tRNA synthetase; 98.4 2E-07 6.9E-12 115.3 5.3 43 833-875 603-658 (967)
51 1wkb_A Leucyl-tRNA synthetase; 98.3 6.8E-08 2.3E-12 117.3 0.7 43 833-875 603-658 (810)
52 2v0c_A Aminoacyl-tRNA syntheta 98.3 1.9E-06 6.4E-11 105.8 12.0 144 248-400 636-830 (878)
53 2v0c_A Aminoacyl-tRNA syntheta 98.3 1.7E-07 5.9E-12 114.9 2.5 60 627-686 100-163 (878)
54 4arc_A Leucine--tRNA ligase; l 97.8 4E-06 1.4E-10 102.9 2.4 60 627-686 120-183 (880)
55 1ile_A Ilers, isoleucyl-tRNA s 97.8 3.7E-06 1.3E-10 102.4 1.8 43 833-875 544-599 (821)
56 1gax_A Valrs, valyl-tRNA synth 97.8 1.6E-05 5.4E-10 97.6 7.2 43 833-875 481-536 (862)
57 3al0_C Glutamyl-tRNA(Gln) amid 97.3 0.00042 1.5E-08 81.8 9.2 46 628-674 177-232 (592)
58 3al0_C Glutamyl-tRNA(Gln) amid 97.3 0.00024 8.3E-09 83.9 6.7 43 106-150 179-232 (592)
59 2o5r_A Glutamyl-tRNA synthetas 97.2 0.00014 4.8E-09 83.9 3.7 75 789-880 190-276 (481)
60 1j09_A Glutamyl-tRNA synthetas 97.1 0.00056 1.9E-08 78.7 7.7 46 628-674 49-104 (468)
61 3afh_A Glutamyl-tRNA synthetas 96.9 0.0017 5.7E-08 75.2 9.0 46 628-674 73-128 (488)
62 1ffy_A Isoleucyl-tRNA syntheta 96.9 0.00059 2E-08 84.3 5.4 44 832-875 547-603 (917)
63 3afh_A Glutamyl-tRNA synthetas 96.7 0.0009 3.1E-08 77.4 4.2 42 107-150 76-128 (488)
64 2o5r_A Glutamyl-tRNA synthetas 96.2 0.0032 1.1E-07 72.7 5.0 25 125-150 92-116 (481)
65 1j09_A Glutamyl-tRNA synthetas 96.0 0.0037 1.3E-07 72.0 4.3 42 107-150 52-104 (468)
66 4g6z_A Glutamate-tRNA ligase; 95.8 0.0015 5.3E-08 75.5 0.1 45 630-674 75-120 (490)
67 3fnr_A Arginyl-tRNA synthetase 94.6 0.089 3E-06 60.5 9.7 55 630-685 146-201 (464)
68 4g6z_A Glutamate-tRNA ligase; 87.5 0.44 1.5E-05 55.2 5.0 46 104-150 73-120 (490)
69 2cyb_A Tyrosyl-tRNA synthetase 77.3 0.5 1.7E-05 51.6 0.2 51 824-875 161-222 (323)
70 2yxn_A Tyrosyl-tRNA synthetase 68.7 0.8 2.7E-05 50.2 -0.8 41 833-875 191-243 (322)
71 3tzl_A Tryptophanyl-tRNA synth 61.9 2 7E-05 47.1 0.7 52 823-875 129-200 (322)
72 2jan_A Tyrosyl-tRNA synthetase 53.2 2.2 7.7E-05 48.7 -0.8 41 833-874 187-238 (432)
73 1jil_A Tyrrs, tyrosyl-tRNA syn 49.9 2.6 8.8E-05 47.9 -1.0 41 833-875 186-239 (420)
74 2pid_A Tyrosyl-tRNA synthetase 49.5 2.3 7.7E-05 47.3 -1.5 41 833-875 210-262 (356)
75 2zp1_A Tyrosyl-tRNA synthetase 48.7 1.5 5.1E-05 47.8 -3.1 51 824-875 154-212 (314)
76 1h3f_A Tyrosyl-tRNA synthetase 47.9 3.4 0.00012 47.1 -0.4 50 825-875 179-240 (432)
77 2ts1_A Tyrosyl-tRNA synthetase 46.9 2.7 9.1E-05 47.8 -1.5 41 833-875 185-238 (419)
78 1i6k_A TRPRS, tryptophanyl-tRN 44.8 6.2 0.00021 43.3 1.0 51 823-874 127-199 (328)
79 2dlc_X Tyrosyl-tRNA synthetase 43.4 4.6 0.00016 45.4 -0.3 51 824-875 173-235 (394)
80 2g36_A Tryptophanyl-tRNA synth 43.1 6.4 0.00022 43.5 0.8 52 823-875 143-213 (340)
81 1yi8_B Tryptophanyl-tRNA synth 42.9 1.1E+02 0.0039 33.6 10.8 16 245-260 210-226 (351)
82 1n3l_A Tyrosyl-tRNA synthetase 35.3 7.7 0.00026 43.2 -0.1 24 432-457 49-72 (372)
83 2el7_A Tryptophanyl-tRNA synth 33.9 12 0.0004 41.3 1.0 51 824-875 132-203 (337)
84 3vgj_A Tyrosyl-tRNA synthetase 33.8 11 0.00039 42.0 1.0 52 823-875 190-256 (373)
85 2cyb_A Tyrosyl-tRNA synthetase 32.3 4.8 0.00016 43.9 -2.3 15 244-258 209-223 (323)
86 2yy5_A Tryptophanyl-tRNA synth 31.7 13 0.00044 41.1 0.9 52 822-874 136-209 (348)
87 2cya_A Tyrosyl-tRNA synthetase 29.2 13 0.00045 41.3 0.5 26 823-849 167-192 (364)
88 2g36_A Tryptophanyl-tRNA synth 27.5 5.8 0.0002 43.8 -2.8 17 245-261 201-217 (340)
89 3n9i_A Tryptophanyl-tRNA synth 27.4 20 0.0007 39.7 1.5 53 821-874 140-214 (346)
90 2j5b_A Tyrosyl-tRNA synthetase 25.6 20 0.00068 39.6 1.1 42 833-875 186-241 (348)
91 3prh_A Tryptophanyl-tRNA synth 25.6 27 0.00091 39.4 2.1 52 823-875 161-237 (388)
92 1y42_X Tyrosyl-tRNA synthetase 25.6 16 0.00055 41.1 0.3 25 432-458 79-103 (392)
93 2pid_A Tyrosyl-tRNA synthetase 25.5 12 0.00041 41.6 -0.7 16 244-259 249-264 (356)
94 3hv0_A Tryptophanyl-tRNA synth 25.2 16 0.00055 41.2 0.2 29 432-463 89-117 (393)
95 3tzl_A Tryptophanyl-tRNA synth 24.3 13 0.00044 40.8 -0.8 16 245-260 188-203 (322)
96 2cyc_A Tyrosyl-tRNA synthetase 24.0 18 0.00062 40.4 0.4 32 823-855 170-203 (375)
97 2yxn_A Tyrosyl-tRNA synthetase 22.6 15 0.00052 40.1 -0.6 15 245-259 231-245 (322)
98 3jxe_A Tryptophanyl-tRNA synth 22.4 28 0.00094 39.3 1.4 50 823-874 196-260 (392)
99 1yi8_B Tryptophanyl-tRNA synth 20.2 25 0.00084 38.9 0.4 13 863-875 210-223 (351)
100 1y42_X Tyrosyl-tRNA synthetase 20.1 20 0.00068 40.4 -0.4 16 245-260 289-304 (392)
No 1
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=3e-71 Score=630.84 Aligned_cols=248 Identities=40% Similarity=0.646 Sum_probs=215.6
Q ss_pred hhhhhhhhhcccccccCCCCCCeee---------ec----CCcceEEehhHHHHHhhhcCCeEEEecccccchHHHHHHH
Q psy6851 405 KSTEILNQCDRLRDEVLPNVGVRLE---------DI----EGKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRA 471 (948)
Q Consensus 405 ~~LKLyNSldr~ReeflP~~G~~V~---------D~----hARTyVsfDilrR~l~~y~gy~v~~v~NiTDiDDKIi~ra 471 (948)
|+|+||||+||.+++|.|..+.+|. +. |+|+||++|+|+|+|+ +.||+|.||+|+||||||||++|
T Consensus 3 m~l~~yntlt~~ke~f~p~~~~~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr-~~Gy~V~~v~n~dD~ddKIi~~A 81 (462)
T 3tqo_A 3 MSVKIFNSLTKQKEIFKPIESGKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLR-MRGYEVTFVRNITDIDDKIIKRA 81 (462)
T ss_dssp CCCEEEETTTTEEEECCCSSTTEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHH-HTTCEEEEEECBBCCCHHHHHHH
T ss_pred ceEEEEEcCCCceeccccCCCCeEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHH-HcCCceEEecCcCCCCcHHHHHH
Confidence 5689999999999999998766655 33 9999999999999999 89999999999999999999999
Q ss_pred HhcchhhhhhhhhhhhhhhhHhhHHHHHHHHHhhhccCCChhhHHHHHHHhHhhHHhhhhcccCCCCccccccchhhhhh
Q psy6851 472 RQNYLFEKHVQENEIQTSKILKDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQPEGTINNIKNVTFQKL 551 (948)
Q Consensus 472 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (948)
++++. .
T Consensus 82 ~~~g~----------~---------------------------------------------------------------- 87 (462)
T 3tqo_A 82 GENKE----------S---------------------------------------------------------------- 87 (462)
T ss_dssp HHTTS----------C----------------------------------------------------------------
T ss_pred HHcCC----------C----------------------------------------------------------------
Confidence 88642 0
Q ss_pred hhhccCCCccccccccCCCCccccccccCCcchhhhhhhhhhhHHHHhhhccCcchhhhhhccCCCccccccccccHHHH
Q psy6851 552 LTAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLDSLHGSSITDNSIFATLPKHW 631 (948)
Q Consensus 552 ~~a~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~ld~~~g~~~~~~~~f~~~~~~~ 631 (948)
..+++.+|
T Consensus 88 ------------------------------------------------------------------------~~e~a~~~ 95 (462)
T 3tqo_A 88 ------------------------------------------------------------------------PAALAERF 95 (462)
T ss_dssp ------------------------------------------------------------------------HHHHHHHH
T ss_pred ------------------------------------------------------------------------HHHHHHHH
Confidence 01367899
Q ss_pred HHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-ccc-CCcccccCCCCCccccccCCCCCcccccchhhhh
Q psy6851 632 EAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KKA-ESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAK 709 (948)
Q Consensus 632 ~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~~-~gsvyfdvssede~pa~k~~~k~~~~~~~~~~ak 709 (948)
+++|++||++|||.+|+++||+|+||+.|+++|++|+++|+ |+. +|+||||+++
T Consensus 96 ~~~f~~d~~~LgI~~d~~~praTe~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~------------------------ 151 (462)
T 3tqo_A 96 IQILHEDEKALRVLSPDQEPRATQYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRR------------------------ 151 (462)
T ss_dssp HHHHHHHHHHHTCCCCSBCCBGGGCHHHHHHHHHHHHHHTSEEECTTSCEEECTTT------------------------
T ss_pred HHHHHHHHHHcCCCCCccccChhhHHHHHHHHHHHHHHCCCEEEecCCcEEecccc------------------------
Confidence 99999999999999999999999999999999999999999 988 7999999998
Q ss_pred hcCCCCCCCCCCCCCCcCcCCCCcccccccChhhhhhcCCCCCCCCCCCCCcccccCCCCchhhccCCCCCCccccccCC
Q psy6851 710 KAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKR 789 (948)
Q Consensus 710 k~eSSsd~~ssse~e~~a~~~~~k~~~~a~~~~~~k~~~ssSd~~Sssede~p~~k~~~~~~~~~~~~~~~~~~~~~~K~ 789 (948)
+. .|++++..... .+..|+. + ..+..|+
T Consensus 152 -------~~-----------~yg~Ls~~~~~-------------------------------~~~~g~r-~--~~~~~K~ 179 (462)
T 3tqo_A 152 -------FK-----------DYGKLSHRHLD-------------------------------ELQAGAR-V--EVSDSKR 179 (462)
T ss_dssp -------CT-----------TTTTTTTCSCC----------------------------------------------CCS
T ss_pred -------cc-----------ccccccCCChH-------------------------------HhhccCc-c--ccccccC
Confidence 43 68888653211 1222321 1 1245799
Q ss_pred CCCCcceeeccCCCCCcccCCCCCCCCchhHHHHHHHHhhcCCCceeecCCCCCCCCCChhHHHHHhccCCCC-------
Q psy6851 790 SPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLPTHD------- 862 (948)
Q Consensus 790 ~~~DfaLwk~~k~~ep~w~spwg~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~------- 862 (948)
||.||+|||++|+|||+|+||||+||||||||||||+.++||.+||||+||+||+||||+||||||+|++|++
T Consensus 180 ~p~DF~LWK~~k~~ep~W~spwG~GrPGWHiEcsam~~~~lG~~~dih~gG~Dl~FpHheneiaqs~a~~g~p~~~~w~H 259 (462)
T 3tqo_A 180 DPLDFVLWKKAKPGEPKWDSPWGEGRPGWHIECSAMSSSILGQPFDIHGGGLDLKFPHHENEIAQSEAGEEKPFVKLWMH 259 (462)
T ss_dssp STTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHHCSSEEEEEEEGGGTTTHHHHHHHHHHHHHSSCCEEEEEE
T ss_pred CccccceeeecCCCCCcccCCCCCCCCCCceehHHHHHHhcCCCeEEEccccccccHHHHhHHHHHHHHcCCCcceEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred -----CCCccccchhhhH
Q psy6851 863 -----QEGKELSKGLAKK 875 (948)
Q Consensus 863 -----~~g~kmsKsl~n~ 875 (948)
++|+|||||+|||
T Consensus 260 ~g~v~~~G~KMSKSlGN~ 277 (462)
T 3tqo_A 260 AGLLEINKEKMSKSLGNI 277 (462)
T ss_dssp ECCEEETTEECCTTTTCC
T ss_pred ccEEecCCcCccccCCCc
Confidence 7999999999998
No 2
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=100.00 E-value=1.2e-68 Score=613.25 Aligned_cols=257 Identities=28% Similarity=0.415 Sum_probs=188.7
Q ss_pred HHHHHhhhhhhhhhhhhcccccccCCCC-------CCeeeec----CCcceEEehhHHHHHhhhcCCeEEEecccccc--
Q psy6851 397 IRTEARLIKSTEILNQCDRLRDEVLPNV-------GVRLEDI----EGKSYITFDILRRILSEYFNYNITYAMNITDI-- 463 (948)
Q Consensus 397 iR~~AR~~~~LKLyNSldr~ReeflP~~-------G~~V~D~----hARTyVsfDilrR~l~~y~gy~v~~v~NiTDi-- 463 (948)
+|......++|+||||+||.+++|.|.. |++|+|. |+|+||+||||+|+|+ +.||+|.||||||||
T Consensus 14 ~~~~~~~~m~l~lyntltr~ke~f~p~~~v~~YvcgPTvYg~~HIGHar~~v~~Dvl~R~lr-~~Gy~V~~v~niTDvGh 92 (501)
T 3sp1_A 14 AQTQGPGSMILKLYNTRTKDFSELTNFENVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLR-FLGYKVNYAMNITDIGH 92 (501)
T ss_dssp --------CCEEEEETTTTEEEEECCCSCEEEEECCCBCSSCCCHHHHHHHHHHHHHHHHHH-HHTCCEEEEEEEBCSCC
T ss_pred ccccCCCCCeEEEEECCCCccccccccCcceEEeCCCcCCCCcchhhhHHHHHHHHHHHHHH-HcCCceeEEeeeccccc
Confidence 4566666778999999999999999964 4555554 9999999999999999 999999999999999
Q ss_pred --------hHHHHHHHHhcchhhhhhhhhhhhhhhhHhhHHHHHHHHHhhhccCCChhhHHHHHHHhHhhHHhhhhcccC
Q psy6851 464 --------DDKIIKRARQNYLFEKHVQENEIQTSKILKDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQ 535 (948)
Q Consensus 464 --------DDKIi~ra~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (948)
|||||++|+++++ . +
T Consensus 93 ltG~~DehddKI~~~A~~~g~--------~---------~---------------------------------------- 115 (501)
T 3sp1_A 93 LTGDLDDGEDKVAKTAREKGL--------T---------V---------------------------------------- 115 (501)
T ss_dssp C-------------------C--------C---------H----------------------------------------
T ss_pred ccCCCCCCCcHHHHHHHHcCC--------C---------H----------------------------------------
Confidence 9999999998642 0 0
Q ss_pred CCCccccccchhhhhhhhhccCCCccccccccCCCCccccccccCCcchhhhhhhhhhhHHHHhhhccCcchhhhhhccC
Q psy6851 536 PEGTINNIKNVTFQKLLTAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLDSLHG 615 (948)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~ld~~~g 615 (948)
T Consensus 116 -------------------------------------------------------------------------------- 115 (501)
T 3sp1_A 116 -------------------------------------------------------------------------------- 115 (501)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccccccHHHHHHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cccCCcccccCCCCCccccccC
Q psy6851 616 SSITDNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KKAESSSDDDSSSEDEKPAVKA 694 (948)
Q Consensus 616 ~~~~~~~~f~~~~~~~~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvssede~pa~k~ 694 (948)
.+++++|++.|++||++|||.+|+.+||+|+||++|+++|++|+++|+ |+.+|+||||+++
T Consensus 116 ---------~e~a~~~~~~f~~d~~~Lgi~~d~~~~~~t~hi~~v~~~i~~L~~kG~aY~~~g~Vyf~v~~--------- 177 (501)
T 3sp1_A 116 ---------YEISEFFTEAFFNDCRKLNIVYPDKVLVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSC--------- 177 (501)
T ss_dssp ---------HHHHHHHHHHHHHHHHHTTCCCCSEEEEGGGCHHHHHHHHHHHHHTTCEEEETTEEEECGGG---------
T ss_pred ---------HHHHHHHHHHHHHHHHHcCCCCCCcccCcchHHHHHHHHHHHHHHCCCEEEeCCcEEecCCc---------
Confidence 136789999999999999999999999999999999999999999999 9999999999988
Q ss_pred CCCCcccccchhhhhhcCCCCCCCCCCCCCCcCcCCCCcccccccChhhhhhcCCCCCCCCCCCCCcccccCCCCchhhc
Q psy6851 695 PAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQA 774 (948)
Q Consensus 695 ~~k~~~~~~~~~~akk~eSSsd~~ssse~e~~a~~~~~k~~~~a~~~~~~k~~~ssSd~~Sssede~p~~k~~~~~~~~~ 774 (948)
+. .|++++..... + .+.
T Consensus 178 ----------------------f~-----------~yG~ls~~~~~-----------~-------------------~~~ 194 (501)
T 3sp1_A 178 ----------------------FK-----------SYGEMAGIDLI-----------D-------------------KDM 194 (501)
T ss_dssp ----------------------CT-----------TTTTTTC--------------------------------------
T ss_pred ----------------------cC-----------CccccCCCChh-----------h-------------------hhc
Confidence 53 68887643220 0 112
Q ss_pred cCCCCCCccccccCCCCCCcceeec---cCCCCCcccCCCCCCCCchhHHHHHHHHhhcCCCceeecCCCCCCCCCChhH
Q psy6851 775 AKPGDLSSQEASEKRSPNDFALWKK---SKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNE 851 (948)
Q Consensus 775 ~~~~~~~~~~~~~K~~~~DfaLwk~---~k~~ep~w~spwg~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FPHH~ne 851 (948)
.|+. + +.+..|+||.||+|||+ +++++|+|+||||.||||||||||||+.++||.+||||+||.||+||||+||
T Consensus 195 ~g~r-~--~~~~~K~~p~Df~lWk~~p~~~~~~~~W~spwG~GrPGWhiEcsam~~~~lg~~~DIH~gG~DLifpHhene 271 (501)
T 3sp1_A 195 TLPR-V--DVDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKDALDIHLGGVDHIGVHHINE 271 (501)
T ss_dssp ------------CCSSTTCEEEEEECCC-----CCBCCTTCSEEECHHHHHHHHHHHHTTTCCCEEEEEGGGTTTHHHHH
T ss_pred cCCc-c--CcccccCCchhhHhcCCCCCCCCCCceecCCCCCCCCCchHHHHHHHHHHcCCCceEEeeccccccchHHHH
Confidence 2221 1 12357999999999998 4479999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCC------------CCCccccchhhhH
Q psy6851 852 LAQAEGLPTHD------------QEGKELSKGLAKK 875 (948)
Q Consensus 852 ~aq~e~~~~~~------------~~g~kmsKsl~n~ 875 (948)
+||++|+++.+ ++|+|||||+|||
T Consensus 272 iAqs~a~~g~~~~~~w~H~g~v~~~G~KMSKSlGN~ 307 (501)
T 3sp1_A 272 IAIAECFLNKKWCDVFVHGEFLIMDYNKMSKSRGNF 307 (501)
T ss_dssp HHHHHHHHTSCCCSEEEEECCEECC----------C
T ss_pred HHHHHHccCCCCCeEEEEeeeEeeCCeEccccCCCc
Confidence 99999998765 8999999999998
No 3
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=9.3e-64 Score=569.34 Aligned_cols=316 Identities=21% Similarity=0.335 Sum_probs=212.3
Q ss_pred hcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeee-CCcEEEeeccCCCCCC----
Q psy6851 95 QKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYES-NGSVYFNVNAFDSQPN---- 167 (948)
Q Consensus 95 e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes-~GsVYFDv~~f~~~g~---- 167 (948)
+.|+++.++++++++.|.++|. ||.+|+++||+|+||++|+ ++|++|+++||||++ +|+|||||++|++||.
T Consensus 83 ~~g~~~~e~a~~~~~~f~~d~~~LgI~~d~~~praTe~i~~i~-~~i~~L~ekG~aY~~~~g~Vyfdv~~~~~yg~Ls~~ 161 (462)
T 3tqo_A 83 ENKESPAALAERFIQILHEDEKALRVLSPDQEPRATQYVPEII-KLIQKLLDNQYAYTGQNGDVFFDVRRFKDYGKLSHR 161 (462)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHHHTCCCCSBCCBGGGCHHHHH-HHHHHHHHHTSEEECTTSCEEECTTTCTTTTTTTTC
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHcCCCCCccccChhhHHHHHH-HHHHHHHHCCCEEEecCCcEEeccccccccccccCC
Confidence 3344444445555556666666 9999999999999999999 799999999999998 8999999999999864
Q ss_pred ------------CCccccCCccccccccccCCCCcCCCCCCCcccCCCCCCCCCCcceeEe-------eccC-ccccccc
Q psy6851 168 ------------HYYAKLVPEAYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIFF-------YGTR-ETGICRQ 227 (948)
Q Consensus 168 ------------~~YgKL~P~DFaLWK~ak~gEp~wespWg~~~~~m~~~~~GRPGWHIEc-------LG~~-dih~GG~ 227 (948)
....|.+|.||+|||++++|||.|+||||. ||||||||| ||.+ |||+||+
T Consensus 162 ~~~~~~~g~r~~~~~~K~~p~DF~LWK~~k~~ep~W~spwG~----------GrPGWHiEcsam~~~~lG~~~dih~gG~ 231 (462)
T 3tqo_A 162 HLDELQAGARVEVSDSKRDPLDFVLWKKAKPGEPKWDSPWGE----------GRPGWHIECSAMSSSILGQPFDIHGGGL 231 (462)
T ss_dssp SCC------------CCSSTTCEEEEEECCTTSCCBCCTTCS----------EEECHHHHHHHHHHHHHCSSEEEEEEEG
T ss_pred ChHHhhccCccccccccCCccccceeeecCCCCCcccCCCCC----------CCCCCceehHHHHHHhcCCCeEEEcccc
Confidence 012477899999999999999999999995 999999999 8998 9999999
Q ss_pred cccCCccccc----------------cccccEEEcccchhhcchhHHHHHHH----------HHHHHHHHhh-cCCChhh
Q psy6851 228 DELFPYTEFK----------------DKYGKVRVHLSQKQQSLKLVVIMKEF----------FLNVKDHIRN-LKFPATT 280 (948)
Q Consensus 228 DL~FPHHEne----------------~h~G~l~i~geKMSKSLGN~vti~ef----------~l~ls~hyR~-l~~s~~~ 280 (948)
||+||||||| +|+|+|.++|+|||||+||+++++++ |.++++|||+ ++|+++.
T Consensus 232 Dl~FpHheneiaqs~a~~g~p~~~~w~H~g~v~~~G~KMSKSlGN~i~~~dll~~~g~dalR~~lls~~yr~~l~fs~~~ 311 (462)
T 3tqo_A 232 DLKFPHHENEIAQSEAGEEKPFVKLWMHAGLLEINKEKMSKSLGNIISIREALKESDVEVLRYFLLSGHYRNPLSYSKEN 311 (462)
T ss_dssp GGTTTHHHHHHHHHHHHHSSCCEEEEEEECCEEETTEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHSCTTSCEEECHHH
T ss_pred ccccHHHHhHHHHHHHHcCCCcceEEEEccEEecCCcCccccCCCcccHHHHHhhcChHHhhhhhccCCCCCCcCcCHHH
Confidence 9999999986 67899999999999999999998875 3447899999 9999988
Q ss_pred hH----HHHhhHHHhHHHh----HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q psy6851 281 VS----SFEKWTQADLELS----TRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGTPNQLLLRDIGAYVTKI 352 (948)
Q Consensus 281 l~----~~~r~~~ad~eL~----~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~~~~~~lL~~i~~~V~~m 352 (948)
+. .+.||...-..+. .....+.++|.+||+||||||.||++||++++.+|.+++... ...+..++..++.+
T Consensus 312 l~~a~~~l~rl~~~~~~~~~~~~~~~~~~~~~~~~a~~dD~nt~~a~~~l~~~~~~~n~~~~~~~-~~~~~~~~~~~~~~ 390 (462)
T 3tqo_A 312 LENGRLALERFYLALRGLPVVNHEKTSSYTDRFYEAMDDDFNTPIAFALLFEMVREINRFRDNNQ-IEKAAVLAAELKCL 390 (462)
T ss_dssp HHHHHHHHHHHHHHHTTCCC------CHHHHHHHHHHTBTCCHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhhhcccc-HHHHHHHHHHHHHH
Confidence 76 3555554422211 123457889999999999999999999999999999987653 34455667889999
Q ss_pred HhHcccccccccCCCCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCCCeeeecC
Q psy6851 353 LTVFGCIGDVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLRDEVLPNVGVRLEDIE 432 (948)
Q Consensus 353 L~VLGL~~~~~~ig~~~~~~~~~~ss~eel~~~~Ld~Lv~~R~~iR~~AR~~~~LKLyNSldr~ReeflP~~G~~V~D~h 432 (948)
+.||||....+.. |.... ...+. ...|+.|++.|.++|+. |.|.++|++|++| ...|+.|+|+.
T Consensus 391 ~~vlg~~~~~~~~-~~~~~----~~~~~---~~~i~~li~~R~~ar~~-------kd~~~aD~iR~~L-~~~Gi~l~D~~ 454 (462)
T 3tqo_A 391 GNIFGLLQYSPEQ-FLQGA----KKEAD---VQEIKKLIDQRNEARAK-------KDWKTADQIRDQL-TDLGVAIEDSS 454 (462)
T ss_dssp HGGGTCSCSCHHH-HC----------------------------------------------------------------
T ss_pred HHhcCCCccchhh-hhhcc----ccccC---HHHHHHHHHHHHHHHHh-------cCHHHHHHHHHHH-HHCCcEEEEcC
Confidence 9999997533211 21100 00011 12477788876666666 9999999999998 68999999997
Q ss_pred CcceEE
Q psy6851 433 GKSYIT 438 (948)
Q Consensus 433 ARTyVs 438 (948)
.+|.|.
T Consensus 455 ~g~~w~ 460 (462)
T 3tqo_A 455 DGTSWR 460 (462)
T ss_dssp ------
T ss_pred CCcEEE
Confidence 666553
No 4
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=100.00 E-value=4.1e-60 Score=542.76 Aligned_cols=309 Identities=15% Similarity=0.149 Sum_probs=222.0
Q ss_pred HHhcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeeeCCcEEEeeccCCCCCC---
Q psy6851 93 EAQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPN--- 167 (948)
Q Consensus 93 a~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~f~~~g~--- 167 (948)
|.+.|+++.++++++++.|.++|+ ||.+|+++||+|+||++|+ ++|++|+++||||+.+|+|||||++|++||.
T Consensus 108 A~~~g~~~~e~a~~~~~~f~~d~~~Lgi~~d~~~~~~t~hi~~v~-~~i~~L~~kG~aY~~~g~Vyf~v~~f~~yG~ls~ 186 (501)
T 3sp1_A 108 AREKGLTVYEISEFFTEAFFNDCRKLNIVYPDKVLVASKHIPIMI-EVVKILEEKKITYFSNGNVYFDTSCFKSYGEMAG 186 (501)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHTTCCCCSEEEEGGGCHHHHH-HHHHHHHHTTCEEEETTEEEECGGGCTTTTTTTC
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCCcccCcchHHHHHH-HHHHHHHHCCCEEEeCCcEEecCCccCCccccCC
Confidence 344456666666666677877777 9999999999999999999 7999999999999999999999999999764
Q ss_pred C--------------CccccCCcccccccc--c-cCCCCcCCCCCCCcccCCCCCCCCCCcceeEe-------eccC-cc
Q psy6851 168 H--------------YYAKLVPEAYGDTKT--L-QEGEVRGYPPWPARIEGLADETPNRLKYHIFF-------YGTR-ET 222 (948)
Q Consensus 168 ~--------------~YgKL~P~DFaLWK~--a-k~gEp~wespWg~~~~~m~~~~~GRPGWHIEc-------LG~~-di 222 (948)
. +..|.+|.||+|||+ . +++||+|+||||. ||||||||| ||.+ ||
T Consensus 187 ~~~~~~~~~g~r~~~~~~K~~p~Df~lWk~~p~~~~~~~~W~spwG~----------GrPGWhiEcsam~~~~lg~~~DI 256 (501)
T 3sp1_A 187 IDLIDKDMTLPRVDVDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGF----------GYPSWHLECAAMNLEYFKDALDI 256 (501)
T ss_dssp -----------------CCSSTTCEEEEEECCC-----CCBCCTTCS----------EEECHHHHHHHHHHHHTTTCCCE
T ss_pred CChhhhhccCCccCcccccCCchhhHhcCCCCCCCCCCceecCCCCC----------CCCCchHHHHHHHHHHcCCCceE
Confidence 1 134677899999998 4 4799999999995 999999999 8988 99
Q ss_pred ccccccccCCccccc----------------cccccEEEcccchhhcchhHHHHHHH-----------HHHHHHHHhh-c
Q psy6851 223 GICRQDELFPYTEFK----------------DKYGKVRVHLSQKQQSLKLVVIMKEF-----------FLNVKDHIRN-L 274 (948)
Q Consensus 223 h~GG~DL~FPHHEne----------------~h~G~l~i~geKMSKSLGN~vti~ef-----------~l~ls~hyR~-l 274 (948)
|+||.||+||||||| +|+|+|+++|+|||||+|||+++.++ |.+++.|||+ +
T Consensus 257 H~gG~DLifpHheneiAqs~a~~g~~~~~~w~H~g~v~~~G~KMSKSlGN~it~~dll~~gyg~d~lR~~lls~~yr~~l 336 (501)
T 3sp1_A 257 HLGGVDHIGVHHINEIAIAECFLNKKWCDVFVHGEFLIMDYNKMSKSRGNFITVKDLEDQNFSPLDFRYLCLTSHYRNQL 336 (501)
T ss_dssp EEEEGGGTTTHHHHHHHHHHHHHTSCCCSEEEEECCEECC----------CCCHHHHHHTTCCHHHHHHHHHTSCTTSCE
T ss_pred EeeccccccchHHHHHHHHHHccCCCCCeEEEEeeeEeeCCeEccccCCCcCCHHHHHhcCCCHHHHHHHHHhccCCCCC
Confidence 999999999999986 67899999999999999999998865 2337789999 9
Q ss_pred CCChhhhH----H----HHhhHHHhHHH----------------hHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Q psy6851 275 KFPATTVS----S----FEKWTQADLEL----------------STRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVN 330 (948)
Q Consensus 275 ~~s~~~l~----~----~~r~~~ad~eL----------------~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN 330 (948)
+|+++.+. . ++||...-..+ ...+..+.++|.+||+||||||.||++||++++.+|
T Consensus 337 ~fs~~~l~~a~~~~~~ll~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~am~dDlnt~~al~~l~~~~~~~~ 416 (501)
T 3sp1_A 337 KFSLDNLQASKIARENLINKLSYFYESLDPVDLNTLNKDLKNFGFSVEKEYYDSFVEKISFDLNVAQGLALLWEIIKSDN 416 (501)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHSCTTSCSSHHHHHHHHHHHHHHHBTSCHHHHHHHHHHHHHCSS
T ss_pred ccCHHHHHHHHHhhHHHHHHHHHHHHHHHhhhcccccccccchhhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHhc
Confidence 99998775 4 55555432211 123456788999999999999999999999999986
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHhHcccccccccCCCCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhh
Q psy6851 331 IYLRGTPNQLLLRDIGAYVTKILTVFGCIGDVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEIL 410 (948)
Q Consensus 331 ~yLd~~~~~~lL~~i~~~V~~mL~VLGL~~~~~~ig~~~~~~~~~~ss~eel~~~~Ld~Lv~~R~~iR~~AR~~~~LKLy 410 (948)
. .... +...++.++.||||...... +.... ... +.+.+.|+.|++.|.++|+. |.|
T Consensus 417 ~------~~~~---~~~~~~~~~~vlGl~~~~~~--~~~~~--~~~----~~~~~~i~~li~~R~~ar~~-------kd~ 472 (501)
T 3sp1_A 417 L------SFVS---KLRLAFIFDEIMSLNLREEI--LKNLQ--NHD----VVIDENMKALIEERRIAKCE-------KNF 472 (501)
T ss_dssp S------CHHH---HHHHHHHHHHHHCCCHHHHH--HHHHT--TSC----CCCCHHHHHHHHHHHHHHHT-------TCH
T ss_pred c------CHHH---HHHHHHHHHHHcCCCcccch--hhccc--ccc----hhhHHHHHHHHHHHHHHHHc-------cCH
Confidence 2 1111 23678888999999643210 10000 000 01123588888887777666 899
Q ss_pred hhhcccccccCCCCCCeeeecCCcceE
Q psy6851 411 NQCDRLRDEVLPNVGVRLEDIEGKSYI 437 (948)
Q Consensus 411 NSldr~ReeflP~~G~~V~D~hARTyV 437 (948)
.++|++|++| ...|+.|+|+..+|-|
T Consensus 473 ~~aD~iRd~L-~~~Gi~l~D~~~g~~w 498 (501)
T 3sp1_A 473 KRADEIRDFF-AKKGFVLVDTKEGTKV 498 (501)
T ss_dssp HHHHHHHHHH-HHTTCCCC--------
T ss_pred HHHHHHHHHH-HHCCcEEEEcCCCcEE
Confidence 9999999997 6899999999666554
No 5
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=100.00 E-value=3.6e-59 Score=532.43 Aligned_cols=246 Identities=39% Similarity=0.669 Sum_probs=208.7
Q ss_pred hhhhhhhcccccccCCCCCCeee---------ec----CCcceEEehhHHHHHhhhcCCeEEEecccccchHHHHHHHHh
Q psy6851 407 TEILNQCDRLRDEVLPNVGVRLE---------DI----EGKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQ 473 (948)
Q Consensus 407 LKLyNSldr~ReeflP~~G~~V~---------D~----hARTyVsfDilrR~l~~y~gy~v~~v~NiTDiDDKIi~ra~~ 473 (948)
|+||||+||.+++|.|..+..|. +. |+|++|++|+|+|+|+ +.||+|+||+||||+|||||.||++
T Consensus 2 l~~ynt~t~~~~~f~p~~~~~v~~yv~gPt~y~~~HiGHar~~v~~D~l~R~lr-~~G~~V~~v~~~tD~d~ki~~~A~~ 80 (461)
T 1li5_A 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLR-FLGYKLKYVRNITDIDDKIIKRANE 80 (461)
T ss_dssp CEEEETTTTEEEECCCSSTTEEEEEECCCBSSSCCBHHHHHHHHHHHHHHHHHH-HHTCEEEEEECBBCCSHHHHHHHHH
T ss_pred cEEEeCCCCCccccccCCCCCeeEEEcCCcCCCCCcccccHHHHHHHHHHHHHH-HcCCCEEEeecCCCCcHHHHHHHHH
Confidence 78999999999999998776555 32 9999999999999999 9999999999999999999999998
Q ss_pred cchhhhhhhhhhhhhhhhHhhHHHHHHHHHhhhccCCChhhHHHHHHHhHhhHHhhhhcccCCCCccccccchhhhhhhh
Q psy6851 474 NYLFEKHVQENEIQTSKILKDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQPEGTINNIKNVTFQKLLT 553 (948)
Q Consensus 474 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (948)
++. .
T Consensus 81 ~g~----------~------------------------------------------------------------------ 84 (461)
T 1li5_A 81 NGE----------S------------------------------------------------------------------ 84 (461)
T ss_dssp TTC----------C------------------------------------------------------------------
T ss_pred cCC----------C------------------------------------------------------------------
Confidence 641 0
Q ss_pred hccCCCccccccccCCCCccccccccCCcchhhhhhhhhhhHHHHhhhccCcchhhhhhccCCCccccccccccHHHHHH
Q psy6851 554 AVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLDSLHGSSITDNSIFATLPKHWEA 633 (948)
Q Consensus 554 a~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~ld~~~g~~~~~~~~f~~~~~~~~~ 633 (948)
..+++++|++
T Consensus 85 ----------------------------------------------------------------------~~~~~~~~~~ 94 (461)
T 1li5_A 85 ----------------------------------------------------------------------FVAMVDRMIA 94 (461)
T ss_dssp ----------------------------------------------------------------------HHHHHHHHHH
T ss_pred ----------------------------------------------------------------------HHHHHHHHHH
Confidence 0136789999
Q ss_pred HHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-ccc-CCcccccCCCCCccccccCCCCCcccccchhhhhhc
Q psy6851 634 EFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KKA-ESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKA 711 (948)
Q Consensus 634 ~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~~-~gsvyfdvssede~pa~k~~~k~~~~~~~~~~akk~ 711 (948)
+|++||++|||.+|+.++|+|+|++.|+++|++|+++|+ |+. +|+|||++++
T Consensus 95 ~f~~~~~~LgI~~~d~~~r~t~~~~~~~~~i~~L~~~G~aY~~~~g~v~f~~~~-------------------------- 148 (461)
T 1li5_A 95 EMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPT-------------------------- 148 (461)
T ss_dssp HHHHHHHHTTCCCCSBCCBGGGCHHHHHHHHHHHHHTTSEEECTTSCEEECGGG--------------------------
T ss_pred HHHHHHHHcCCCCCcccccccchHHHHHHHHHHHHHCCCEEEecCCCEEEeccc--------------------------
Confidence 999999999999999999999999999999999999999 998 9999999987
Q ss_pred CCCCCCCCCCCCCCcCcCCCCcccccccChhhhhhcCCCCCCCCCCCCCcccccCCCCchhhccCCCCCCccccccCCCC
Q psy6851 712 ESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRSP 791 (948)
Q Consensus 712 eSSsd~~ssse~e~~a~~~~~k~~~~a~~~~~~k~~~ssSd~~Sssede~p~~k~~~~~~~~~~~~~~~~~~~~~~K~~~ 791 (948)
+. .|++++.... + .+..|+. +. ....|++|
T Consensus 149 -----~~-----------~yg~lsg~~~------------~-------------------~l~~g~r-v~--~~~~k~~p 178 (461)
T 1li5_A 149 -----DP-----------TYGVLSRQDL------------D-------------------QLQAGAR-VD--VVDDKRNP 178 (461)
T ss_dssp -----CT-----------TTTTTTTC--------------------------------------------------CCST
T ss_pred -----cc-----------ccccccCCCH------------H-------------------HhhcCCc-cc--chhcccCc
Confidence 32 3444432110 0 0111111 11 13469999
Q ss_pred CCcceeeccCCCCCcccCCCCCCCCchhHHHHHHHHhhcCCCceeecCCCCCCCCCChhHHHHHhccCCCC---------
Q psy6851 792 NDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLPTHD--------- 862 (948)
Q Consensus 792 ~DfaLwk~~k~~ep~w~spwg~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~--------- 862 (948)
.||+|||.+++|+|.|+||||.||||||||||+|+.++||.++|||+||.||+||||+||+||++|++|.+
T Consensus 179 ~Df~lwk~~~~g~~~w~s~WG~g~PgWhiecsam~~~~lg~~~dih~gG~Dl~fpH~~~~~aq~~a~~g~~~~~~~~h~g 258 (461)
T 1li5_A 179 MDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSG 258 (461)
T ss_dssp TCEEEEEECCTTSCCBCCTTCSEEECSSHHHHHHHHHHHCSSEEEEECBGGGTTTHHHHHHHHHHHHSSSCCEEEECCBC
T ss_pred cceEEEccCCCCCCcccCCCCCcCCCccchhHHHHHHHhCCCceEEeccCccCchHHHHHHHHHHHhcCCCCCcEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999987655
Q ss_pred ---CCCccccchhhhH
Q psy6851 863 ---QEGKELSKGLAKK 875 (948)
Q Consensus 863 ---~~g~kmsKsl~n~ 875 (948)
++|+|||||+|||
T Consensus 259 ~v~~~G~KMSKS~GN~ 274 (461)
T 1li5_A 259 MVMVDREKMSKSLGNF 274 (461)
T ss_dssp CEEETTBCCCGGGTCC
T ss_pred EEEECCeEccccCCCc
Confidence 7999999999998
No 6
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=100.00 E-value=2.9e-53 Score=483.90 Aligned_cols=316 Identities=22% Similarity=0.258 Sum_probs=208.3
Q ss_pred hcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeee-CCcEEEeeccCCCCCCC---
Q psy6851 95 QKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYES-NGSVYFNVNAFDSQPNH--- 168 (948)
Q Consensus 95 e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes-~GsVYFDv~~f~~~g~~--- 168 (948)
+.|++++++++++++.|.++|+ ||.+|+++||+|+|++.|+ ++|++|+++||||+. +|+|||+|++|++||.-
T Consensus 80 ~~g~~~~~~~~~~~~~f~~~~~~LgI~~~d~~~r~t~~~~~~~-~~i~~L~~~G~aY~~~~g~v~f~~~~~~~yg~lsg~ 158 (461)
T 1li5_A 80 ENGESFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEII-ELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQ 158 (461)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHTTCCCCSBCCBGGGCHHHHH-HHHHHHHHTTSEEECTTSCEEECGGGCTTTTTTTTC
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHcCCCCCcccccccchHHHHH-HHHHHHHHCCCEEEecCCCEEEecccccccccccCC
Confidence 3455555556666667777777 9999999999999999999 799999999999999 99999999999885421
Q ss_pred -------------CccccCCccccccccccCCCCcCCCCCCCcccCCCCCCCCCCcceeEe-------eccC-ccccccc
Q psy6851 169 -------------YYAKLVPEAYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIFF-------YGTR-ETGICRQ 227 (948)
Q Consensus 169 -------------~YgKL~P~DFaLWK~ak~gEp~wespWg~~~~~m~~~~~GRPGWHIEc-------LG~~-dih~GG~ 227 (948)
...|.+|.||++||..++|+|.|++|||. ||||||||| +|.+ |||+||.
T Consensus 159 ~~~~l~~g~rv~~~~~k~~p~Df~lwk~~~~g~~~w~s~WG~----------g~PgWhiecsam~~~~lg~~~dih~gG~ 228 (461)
T 1li5_A 159 DLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGA----------GRPGWHIECSAMNCKQLGNHFDIHGGGS 228 (461)
T ss_dssp ----------------CCSTTCEEEEEECCTTSCCBCCTTCS----------EEECSSHHHHHHHHHHHCSSEEEEECBG
T ss_pred CHHHhhcCCcccchhcccCccceEEEccCCCCCCcccCCCCC----------cCCCccchhHHHHHHHhCCCceEEeccC
Confidence 01244578999999999999999999995 999999999 5877 9999999
Q ss_pred cccCCccccc----------------cccccEEEcccchhhcchhHHHHHHH----------HHHHHHHHhh-cCCChhh
Q psy6851 228 DELFPYTEFK----------------DKYGKVRVHLSQKQQSLKLVVIMKEF----------FLNVKDHIRN-LKFPATT 280 (948)
Q Consensus 228 DL~FPHHEne----------------~h~G~l~i~geKMSKSLGN~vti~ef----------~l~ls~hyR~-l~~s~~~ 280 (948)
||+||||+|+ +|+|+|+++|+|||||+||+|++.++ |.+++.|||+ ++|+++.
T Consensus 229 Dl~fpH~~~~~aq~~a~~g~~~~~~~~h~g~v~~~G~KMSKS~GN~v~~~dll~~~g~dalR~~ll~~~~~~~~~fs~~~ 308 (461)
T 1li5_A 229 DLMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEEN 308 (461)
T ss_dssp GGTTTHHHHHHHHHHHHSSSCCEEEECCBCCEEETTBCCCGGGTCCCBHHHHHTTSCHHHHHHHHHSSCTTSCEEECHHH
T ss_pred ccCchHHHHHHHHHHHhcCCCCCcEEEEeeEEEECCeEccccCCCccChhHHhhhCCHHHHHHHHHcCCcCCCCCCCHHH
Confidence 9999999975 67899999999999999999999875 2336789999 9999987
Q ss_pred hH----HHHhhHHHhHHHh-----HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q psy6851 281 VS----SFEKWTQADLELS-----TRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGTPNQLLLRDIGAYVTK 351 (948)
Q Consensus 281 l~----~~~r~~~ad~eL~-----~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~~~~~~lL~~i~~~V~~ 351 (948)
+. .+.|+...-..+. ..+.++.+.|.+||+||||||.|+++|+++++.+|+|++. . ...+..++.+++.
T Consensus 309 l~~~~~~l~rl~n~~~~~~~~~~~d~l~~~~~~~~~am~dd~n~~~Al~~l~~l~~~~N~~~~~-~-~~~~~~~~~~~~~ 386 (461)
T 1li5_A 309 LKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAE-D-MAAANAMASHLRK 386 (461)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTSCCCSCHHHHHHHHHHHHBTSCHHHHHHHHHHHHHHHHHHHHH-C-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHhc-c-HHHHHHHHHHHHH
Confidence 65 3445443211110 0235678899999999999999999999999999999865 2 3455566788999
Q ss_pred HHhHcccccccccCCCCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCCCeeeec
Q psy6851 352 ILTVFGCIGDVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLRDEVLPNVGVRLEDI 431 (948)
Q Consensus 352 mL~VLGL~~~~~~ig~~~~~~~~~~ss~eel~~~~Ld~Lv~~R~~iR~~AR~~~~LKLyNSldr~ReeflP~~G~~V~D~ 431 (948)
++.||||....+. +|...+. .+..+. ...|+.|++.|.++|+. |.|..+|++|++| ...|+.|+|+
T Consensus 387 ~~~~lG~~~~~~~-~~~~~~~--~~~~~~---~~~~~~l~~~r~~ar~~-------k~~~~aD~iR~~l-~~~gi~~~d~ 452 (461)
T 1li5_A 387 LSAVLGLLEQEPE-AFLQSGA--QADDSE---VAEIEALIQQRLDARKA-------KDWAAADAARDRL-NEMGIVLEDG 452 (461)
T ss_dssp HHTTTTCSCSCHH-HHC---------------------------------------------------------------
T ss_pred HHHHcCCCccChh-hhhhccc--cccccc---HHHHHHHHHHHHHHHhc-------cCHHHHHHHHHHH-HHCCCEEEEc
Confidence 9999999532111 1211000 001100 01267788877666665 8999999999987 7899999999
Q ss_pred CCcceE
Q psy6851 432 EGKSYI 437 (948)
Q Consensus 432 hARTyV 437 (948)
..+|-|
T Consensus 453 ~~g~~w 458 (461)
T 1li5_A 453 PQGTTW 458 (461)
T ss_dssp ------
T ss_pred CCCcEE
Confidence 666655
No 7
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=100.00 E-value=6.1e-53 Score=474.97 Aligned_cols=250 Identities=31% Similarity=0.522 Sum_probs=196.2
Q ss_pred hhhhhhhhhcccccccCCCCCCeee---------ec----CCcceEEehhHHHHHhhhcCCeEEEecccccchHHHHHHH
Q psy6851 405 KSTEILNQCDRLRDEVLPNVGVRLE---------DI----EGKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRA 471 (948)
Q Consensus 405 ~~LKLyNSldr~ReeflP~~G~~V~---------D~----hARTyVsfDilrR~l~~y~gy~v~~v~NiTDiDDKIi~ra 471 (948)
+.++||||+++.+++|.| .| .|. +. |+|+||.+|+|+|+|+ +.||+|.||||+||+|||||.+|
T Consensus 19 ~~~~lynt~~~~~~~f~p-~~-~v~~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr-~~G~~V~~~~~~dd~g~ki~~~A 95 (414)
T 3c8z_A 19 PALRLFDSADRQVRPVTP-GP-TATMYVCGITPYDATHLGHAATYLTFDLVHRLWL-DAGHTVQYVQNVTDVDDPLFERA 95 (414)
T ss_dssp CCCEEEETTTTEEEECCC-CS-EEEEEECCCCTTSCCBHHHHHHHHHHHHHHHHHH-HTTCEEEEEEEECCSCHHHHHHH
T ss_pred CCcEEEeeccCCcccccC-CC-CceEEeCCCcCCCCcCccccHHHHHHHHHHHHHH-HcCCCEEeCCCCCCccHHHHHHH
Confidence 356999999999999998 33 322 32 8999999999999999 78999999999999999999999
Q ss_pred HhcchhhhhhhhhhhhhhhhHhhHHHHHHHHHhhhccCCChhhHHHHHHHhHhhHHhhhhcccCCCCccccccchhhhhh
Q psy6851 472 RQNYLFEKHVQENEIQTSKILKDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQPEGTINNIKNVTFQKL 551 (948)
Q Consensus 472 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (948)
++++. .
T Consensus 96 ~~~g~----------~---------------------------------------------------------------- 101 (414)
T 3c8z_A 96 ERDGI----------D---------------------------------------------------------------- 101 (414)
T ss_dssp HHHTC----------C----------------------------------------------------------------
T ss_pred HHcCC----------C----------------------------------------------------------------
Confidence 87531 0
Q ss_pred hhhccCCCccccccccCCCCccccccccCCcchhhhhhhhhhhHHHHhhhccCcchhhhhhccCCCccccccccccHHHH
Q psy6851 552 LTAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLDSLHGSSITDNSIFATLPKHW 631 (948)
Q Consensus 552 ~~a~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~ld~~~g~~~~~~~~f~~~~~~~ 631 (948)
+.+++++|
T Consensus 102 ------------------------------------------------------------------------~~~~~~~~ 109 (414)
T 3c8z_A 102 ------------------------------------------------------------------------WRTLGDRE 109 (414)
T ss_dssp ------------------------------------------------------------------------HHHHHHHH
T ss_pred ------------------------------------------------------------------------HHHHHHHH
Confidence 01356799
Q ss_pred HHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cccC----CcccccCCCCCccccccCCCCCcccccchh
Q psy6851 632 EAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KKAE----SSSDDDSSSEDEKPAVKAPAKPVAHAAEPA 706 (948)
Q Consensus 632 ~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~~~----gsvyfdvssede~pa~k~~~k~~~~~~~~~ 706 (948)
.+.|.+||++|||.+|+.++|+|+|++.|++++++|+++|+ |+.+ |++||++++
T Consensus 110 ~~~~~~~~~~Lgi~~~d~~~r~t~~~~~~~~~~~~L~~kG~~Y~~~~~~e~~~~f~~~~--------------------- 168 (414)
T 3c8z_A 110 TQLFREDMAALRVLPPHDYVAATDAIAEVVEMVEKLLASGAAYIVEDAEYPDVYFRADA--------------------- 168 (414)
T ss_dssp HHHHHHHHHHTTCCCCSEEEEGGGCHHHHHHHHHHHHHHTSEEECSCSSCCCEEECTTS---------------------
T ss_pred HHHHHHHHHHcCCCCCcceecccchHHHHHHHHHHHHHCCCEEeccCCcCCCEEEEchh---------------------
Confidence 99999999999999999999999999999999999999999 9988 999999988
Q ss_pred hhhhcCCCCCCCCCCCCCCcCcCCCCcccccccChhhhhhcCCCCCCCCCCCCCcccccCCCCchhhccCCCCCCccccc
Q psy6851 707 AAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEAS 786 (948)
Q Consensus 707 ~akk~eSSsd~~ssse~e~~a~~~~~k~~~~a~~~~~~k~~~ssSd~~Sssede~p~~k~~~~~~~~~~~~~~~~~~~~~ 786 (948)
+. .|++++.... ++ . ........++++ .+
T Consensus 169 ----------~~-----------~~g~l~~~~~------------~~--------~-------~~~~~~~~~~~~---~~ 197 (414)
T 3c8z_A 169 ----------TA-----------QFGYESGYDR------------DT--------M-------LTLFAERGGDPD---RP 197 (414)
T ss_dssp ----------ST-----------TTTTTTCCCH------------HH--------H-------HHHHHHTTCCTT---CT
T ss_pred ----------hh-----------hhHhhcCCCH------------HH--------H-------HHHHhhcccccc---cc
Confidence 43 3444332100 00 0 000001112221 35
Q ss_pred cCCCCCCcceeeccCCCCCcccCCCCCCCCchhHHHHHHHHhhcCCCceeecCCCCCCCCCChhHHHHHhccCCCC----
Q psy6851 787 EKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLPTHD---- 862 (948)
Q Consensus 787 ~K~~~~DfaLwk~~k~~ep~w~spwg~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~---- 862 (948)
.|++|.||+|||..++|+|.|+||||.||||||||||+|+.++||.++|||+||.|++||||+|++||++|+++..
T Consensus 198 ~k~~~~D~~lWk~~~pg~~~Wda~~g~g~pgWhiec~a~~~~~~g~~~di~~~G~D~~~~H~~~~~a~~~a~~g~~~~~~ 277 (414)
T 3c8z_A 198 GKSDQLDALLWRAERPGEPSWPSPFGRGRPGWHVECSAIALTRIGTGLDIQGGGSDLIFPHHEYSAAHAESVTGERRFAR 277 (414)
T ss_dssp TCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHTCSCEEEEEEEGGGTTTHHHHHHHHHHHHHCCSCSEE
T ss_pred ccCCcchhhhcCCCCCCCCCCCCCCCCCCCCccchhHHHHHHhcCCCceEEEeccccccHHHHHHHHHHHHhcCCCCcCe
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999987652
Q ss_pred ---------CCCccccchhhhH
Q psy6851 863 ---------QEGKELSKGLAKK 875 (948)
Q Consensus 863 ---------~~g~kmsKsl~n~ 875 (948)
++|+|||||+||+
T Consensus 278 ~~~h~g~v~~~G~KMSKS~GN~ 299 (414)
T 3c8z_A 278 HYVHTGMIGWDGHKMSKSRGNL 299 (414)
T ss_dssp EEEEECCBC-------------
T ss_pred EEEEcCEEecCCeEcccccCCc
Confidence 6999999999999
No 8
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=100.00 E-value=3e-42 Score=388.14 Aligned_cols=250 Identities=20% Similarity=0.217 Sum_probs=187.8
Q ss_pred HhcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeeeC----CcEEEeeccCCCCCC
Q psy6851 94 AQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESN----GSVYFNVNAFDSQPN 167 (948)
Q Consensus 94 ~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes~----GsVYFDv~~f~~~g~ 167 (948)
.+.|+++.+++.++.+.|.++|. ||.+|++++|+|+|++.|+ ++|++|+++|++|+.+ |+|||++++|++|+.
T Consensus 96 ~~~g~~~~~~~~~~~~~~~~~~~~Lgi~~~d~~~r~t~~~~~~~-~~~~~L~~kG~~Y~~~~~~e~~~~f~~~~~~~~g~ 174 (414)
T 3c8z_A 96 ERDGIDWRTLGDRETQLFREDMAALRVLPPHDYVAATDAIAEVV-EMVEKLLASGAAYIVEDAEYPDVYFRADATAQFGY 174 (414)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHTTCCCCSEEEEGGGCHHHHH-HHHHHHHHHTSEEECSCSSCCCEEECTTSSTTTTT
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHcCCCCCcceecccchHHHHH-HHHHHHHHCCCEEeccCCcCCCEEEEchhhhhhHh
Confidence 33466666666667777887777 9999999999999999999 7999999999999988 999999999988653
Q ss_pred --------------------CCccccCCccccccccccCCCCcCCCCCCCcccCCCCCCCCCCcceeEe-------eccC
Q psy6851 168 --------------------HYYAKLVPEAYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIFF-------YGTR 220 (948)
Q Consensus 168 --------------------~~YgKL~P~DFaLWK~ak~gEp~wespWg~~~~~m~~~~~GRPGWHIEc-------LG~~ 220 (948)
..|.|.+|.||++||...+|+|.|++|||. ||||||||| ||..
T Consensus 175 l~~~~~~~~~~~~~~~~~~~~~~~k~~~~D~~lWk~~~pg~~~Wda~~g~----------g~pgWhiec~a~~~~~~g~~ 244 (414)
T 3c8z_A 175 ESGYDRDTMLTLFAERGGDPDRPGKSDQLDALLWRAERPGEPSWPSPFGR----------GRPGWHVECSAIALTRIGTG 244 (414)
T ss_dssp TTCCCHHHHHHHHHHTTCCTTCTTCSSTTCEEEEEECCTTSCCBCCTTCS----------EEECHHHHHHHHHHHHTCSC
T ss_pred hcCCCHHHHHHHHhhccccccccccCCcchhhhcCCCCCCCCCCCCCCCC----------CCCCccchhHHHHHHhcCCC
Confidence 035677899999999999999999999995 999999999 7877
Q ss_pred -ccccccccccCCccccc-----------------cccccEEEcccchhhcchhHHHHHHH-----------HHHHHHHH
Q psy6851 221 -ETGICRQDELFPYTEFK-----------------DKYGKVRVHLSQKQQSLKLVVIMKEF-----------FLNVKDHI 271 (948)
Q Consensus 221 -dih~GG~DL~FPHHEne-----------------~h~G~l~i~geKMSKSLGN~vti~ef-----------~l~ls~hy 271 (948)
|+|+||.|++||||+|+ +|+|+|.++|+|||||+||+|++.++ |.+++.+|
T Consensus 245 ~di~~~G~D~~~~H~~~~~a~~~a~~g~~~~~~~~~h~g~v~~~G~KMSKS~GN~v~~~~ll~~g~g~D~lR~~ll~~~~ 324 (414)
T 3c8z_A 245 LDIQGGGSDLIFPHHEYSAAHAESVTGERRFARHYVHTGMIGWDGHKMSKSRGNLVLVSQLRAQGVDPSAIRLGLFSGHY 324 (414)
T ss_dssp EEEEEEEGGGTTTHHHHHHHHHHHHHCCSCSEEEEEEECCBC-------------CBHHHHHHTTCCHHHHHHHHHTSCT
T ss_pred ceEEEeccccccHHHHHHHHHHHHhcCCCCcCeEEEEcCEEecCCeEcccccCCcCCHHHHhhccCCcchheeEEEecCc
Confidence 99999999999999974 46789999999999999999988764 23356889
Q ss_pred hh-cCCChhhhHH----HHhhHHHhHHHh-HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcCCCCHHHHHHH
Q psy6851 272 RN-LKFPATTVSS----FEKWTQADLELS-TRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGTPNQLLLRDI 345 (948)
Q Consensus 272 R~-l~~s~~~l~~----~~r~~~ad~eL~-~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~~~~~~lL~~i 345 (948)
++ ++|+.+.+.. +.++...-..+. ..+.++.++|.++|+|||||+.|+++|+++++.+|. ..+......
T Consensus 325 ~~d~~fs~~~l~~~~~~l~~l~n~~~~~~~~~~~~~~~~v~~a~~d~~~~~~Al~~i~~~~~~~n~--~~~~~~~~~--- 399 (414)
T 3c8z_A 325 REDRFWSNEVLDEANARLARWRSATALPEAPDATDVIARVRQYLADDLDTPKALAALDGWCTDALS--YGGHDTESP--- 399 (414)
T ss_dssp TSCBCCCHHHHHHHHHHHHHHHHHHTSSCBSCCHHHHHHHHHHHHBTCCHHHHHHHHHHHHHHHHH--HCCSBSSHH---
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--ccCCChhhH---
Confidence 98 9999987652 344433211100 012467889999999999999999999999999999 333322222
Q ss_pred HHHHHHHHhHcccc
Q psy6851 346 GAYVTKILTVFGCI 359 (948)
Q Consensus 346 ~~~V~~mL~VLGL~ 359 (948)
...++.+..||||.
T Consensus 400 ~~~~~~~d~vLg~~ 413 (414)
T 3c8z_A 400 RLVATTVDALLGVD 413 (414)
T ss_dssp HHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhCCC
Confidence 24577788999984
No 9
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=99.93 E-value=3.8e-28 Score=280.81 Aligned_cols=151 Identities=13% Similarity=0.155 Sum_probs=107.2
Q ss_pred ccccHHHHHHHHHHHHhhcCCCCCCeeecccc-cHH-HHHHHHhCcccCC----------------C-cccCCcccccCC
Q psy6851 624 FATLPKHWEAEFHKDMADLNVLPPTVLTRVSE-YIP-EIVASAQTPKPAA----------------A-KKAESSSDDDSS 684 (948)
Q Consensus 624 f~~~~~~~~~~f~~dm~~L~v~~p~~~~rvse-~i~-~ii~~i~~l~~~g----------------~-Y~~~gsvyfdvs 684 (948)
+.+++++|++.|.+||+.||| .|+.+ |+|+ |++ .+.++|++|+++| + |.. + ||+++
T Consensus 100 ~~~~~~~~~~~~~~~l~~Lgi-~~D~~-~~se~~~~g~~~~~i~~L~~~G~~iy~~~~~~~g~~~~~~y~~--~-~~~~~ 174 (523)
T 1irx_A 100 HESYAEHFMRKFEEEVEKLGI-EVDLL-YASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPE--N-WWPAM 174 (523)
T ss_dssp SSSHHHHHHHHHHHHHHTTTC-CCEEE-EHHHHHHTTTTHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCCT--T-CCSEE
T ss_pred HHHHHHHHHHHHHHHHHHcCC-CceEE-echhhccchHHHHHHHHHHHchHHHHHHHHhhccccccccccC--C-ceecc
Confidence 567899999999999999999 68999 9999 999 9999999999999 4 443 1 55433
Q ss_pred CCCccccccCCCCCcccccchhhhhhcCCCCCCCCCCCCCCcCcCCCCcccccccChhhhhhcCCCCCCCCCCCCCcccc
Q psy6851 685 SEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAV 764 (948)
Q Consensus 685 sede~pa~k~~~k~~~~~~~~~~akk~eSSsd~~ssse~e~~a~~~~~k~~~~a~~~~~~k~~~ssSd~~Sssede~p~~ 764 (948)
. +. ..++++... .
T Consensus 175 ~-------------------------------~~----------~~~~~~~~~-~------------------------- 187 (523)
T 1irx_A 175 V-------------------------------YC----------PEHRREAEI-I------------------------- 187 (523)
T ss_dssp E-------------------------------EC----------TTTCCEECE-E-------------------------
T ss_pred c-------------------------------cc----------hhhCCcccc-c-------------------------
Confidence 2 11 011221100 0
Q ss_pred cCCCCchhhccCCCCCCccccccCCCCCCcceeeccCCCCCcccCCC-CCCCCchhHHHHHHHHhhcCCCceeecCCCCC
Q psy6851 765 KAPAKPVAQAAKPGDLSSQEASEKRSPNDFALWKKSKAGEPWWSSPW-GEGRPGWHIECSVMASAVLGPQLDIHTGGVDL 843 (948)
Q Consensus 765 k~~~~~~~~~~~~~~~~~~~~~~K~~~~DfaLwk~~k~~ep~w~spw-g~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl 843 (948)
. . .. +++.+|.+ +.|++.|.++| |.||||||||| +|...+||..+| .+|+|+
T Consensus 188 -------~---------~--~~--~~~~~f~~----~~g~~~~~d~~~G~g~~~w~~d~-~~~~~~l~~~vd--~~G~Dh 240 (523)
T 1irx_A 188 -------E---------W--DG--GWKVKYKC----PEGHEGWVDIRSGNVKLRWRVDW-PMRWSHFGVDFE--PAGKDH 240 (523)
T ss_dssp -------E---------E--CS--SSCEEECC----SSSCCCEECTTSSCEEECHHHHH-HHHHHHSCCCBC--CEEHHH
T ss_pred -------c---------c--CC--CCceeeee----cCCCccccCCcCCCCCCCCCcch-HhhHHHcCCCCc--CCCcCc
Confidence 0 0 01 14567877 57899999999 99999999999 899999997766 899999
Q ss_pred CCCC----ChhHHHHHhccCCC-C----------CC--CccccchhhhH
Q psy6851 844 KFPH----HDNELAQAEGLPTH-D----------QE--GKELSKGLAKK 875 (948)
Q Consensus 844 ~FPH----H~ne~aq~e~~~~~-~----------~~--g~kmsKsl~n~ 875 (948)
+||| |.|+|+| +++ |. . .+ |+|||||+||+
T Consensus 241 ~~~h~s~~~~~~i~~-~al-G~~~p~~~h~~~i~~~g~g~KmSKs~Gn~ 287 (523)
T 1irx_A 241 LVAGSSYDTGKEIIK-EVY-GKEAPLSLMYEFVGIKGQKGKMSGSKGNV 287 (523)
T ss_dssp HSTTSHHHHHHHHHH-HHH-CCCCCBCCEECCEEESCC---------CC
T ss_pred cCCCcchhhHHHHHH-HHh-CCCCCeEEEEEEEEeCCCCCCCCCcCCCC
Confidence 9999 8999998 343 32 1 44 99999999998
No 10
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=99.91 E-value=3.6e-26 Score=261.79 Aligned_cols=190 Identities=18% Similarity=0.111 Sum_probs=111.8
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCeeecccc--cHHHHHHHHhCcccCCC-cccCCcccccCCCCCccccccCCCCCccccc
Q psy6851 627 LPKHWEAEFHKDMADLNVLPPTVLTRVSE--YIPEIVASAQTPKPAAA-KKAESSSDDDSSSEDEKPAVKAPAKPVAHAA 703 (948)
Q Consensus 627 ~~~~~~~~f~~dm~~L~v~~p~~~~rvse--~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvssede~pa~k~~~k~~~~~~ 703 (948)
++++|.+.|.++|++||| .++.++|+++ |++.|+.++++|.++|+ |+....++++...+.
T Consensus 72 ~~~~~~~~~~~~~~~lgi-~~d~~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~---------------- 134 (497)
T 2csx_A 72 LVDRNAERFKKLWEFLKI-EYTKFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEE---------------- 134 (497)
T ss_dssp HHHHHHHHHHHHHHHTTC-CCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC--------------------------
T ss_pred HHHHHHHHHHHHHHHhCC-cCCCCccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCe----------------
Confidence 457899999999999999 5789999999 99999999999999999 987656666655421
Q ss_pred chhhhhhcCCCCCCCCCCCC-CCcCcCCCCcccccccChhhhhhcCCCCCC---CCCCCCCcccccCCCCchhhccCCCC
Q psy6851 704 EPAAAKKAESSSDDDSSSED-EKPAVKTPAKPVAQAAKPAAAKKAESSSDD---DSSSEDEKPAVKAPAKPVAQAAKPGD 779 (948)
Q Consensus 704 ~~~~akk~eSSsd~~ssse~-e~~a~~~~~k~~~~a~~~~~~k~~~ssSd~---~Sssede~p~~k~~~~~~~~~~~~~~ 779 (948)
+-+..+- +.+.-..++.+.-. . .++. ..+ +-.+.. ......+...
T Consensus 135 -------------~~~~~~~~~~~~c~~~~~~~~~--~---------~~~~wf~~l~-~~~~~l------~~~~~~~~~~ 183 (497)
T 2csx_A 135 -------------FKSEAELAEDHTCPIHQKKCEY--I---------KEPSYFFRLS-KYQDKL------LELYEKNPEF 183 (497)
T ss_dssp -----------------------------------------------CCEEEEECTT-SSHHHH------HHHHHHCTTS
T ss_pred -------------EccHHHhccCCCCCCCCCCCeE--E---------ecCceEEEcH-HHHHHH------HHHHHhCCCe
Confidence 0000000 00000000000000 0 0000 000 000000 0000000000
Q ss_pred CCccccccC--------CCCCCcceeeccCCCCCcccCCCCCCCC---chhHH---------HHHHHH---hhcCCCcee
Q psy6851 780 LSSQEASEK--------RSPNDFALWKKSKAGEPWWSSPWGEGRP---GWHIE---------CSVMAS---AVLGPQLDI 836 (948)
Q Consensus 780 ~~~~~~~~K--------~~~~DfaLwk~~k~~ep~w~spwg~GrP---gWHie---------Cs~m~~---~~lg~~~di 836 (948)
+ .....| .+-.|+++.+ |.|++|||.++| ||||+ ||+|.. .++ ++||
T Consensus 184 ~--~p~~~~~~~~~~l~~~~~Dw~isR------~~~~~~WG~~iP~~~~~~i~vW~ds~~~~~s~~~~~~~~~~--p~di 253 (497)
T 2csx_A 184 I--QPDYRRNEIISFVKQGLKDLSVTR------PRSRVKWGIPVPFDPEHTIYVWFDALFNYISALEDKVEIYW--PADL 253 (497)
T ss_dssp B--CSHHHHHHHHHHHHHCCCCEECEE------ETTTCCSSEEETTEEEEEECSHHHHHTHHHHTTTTTHHHHC--SCSC
T ss_pred e--CcHHHHHHHHHHHhcCCccccccc------cCCCCCCceecCCCCCceEEEecccchhhcccCCCcchhhC--CceE
Confidence 0 000011 1223444433 679999999999 89998 999976 677 7899
Q ss_pred ecCCCCCCCCCChhHHHHHhccCCCC------------CCCccccchhhhH
Q psy6851 837 HTGGVDLKFPHHDNELAQAEGLPTHD------------QEGKELSKGLAKK 875 (948)
Q Consensus 837 h~GG~Dl~FPHH~ne~aq~e~~~~~~------------~~g~kmsKsl~n~ 875 (948)
|+||.|++||||.|+.||++++ |.. ++|+|||||+||+
T Consensus 254 ~~~G~D~~~~H~~~~~a~l~~~-g~~~~~~~~~~G~v~~~G~KMSKS~GN~ 303 (497)
T 2csx_A 254 HLVGKDILRFHTVYWPAFLMSL-GYELPKKVFAHGWWTVEGKKMSKTLGNV 303 (497)
T ss_dssp EEEEGGGHHHHHTHHHHHHHHH-TCCCCSCEEEECCEESSSSBCCTTTTCC
T ss_pred EEeecchhHhHHHHHHHHHHHc-CCCCCcEEEECcEEEeCCceeCCcCCCC
Confidence 9999999999999999999875 322 6999999999999
No 11
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=99.91 E-value=5.4e-26 Score=260.05 Aligned_cols=58 Identities=12% Similarity=-0.005 Sum_probs=50.1
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCeeecccc--cHHHHHHHHhCcccCCC-cccCCcccccCCC
Q psy6851 627 LPKHWEAEFHKDMADLNVLPPTVLTRVSE--YIPEIVASAQTPKPAAA-KKAESSSDDDSSS 685 (948)
Q Consensus 627 ~~~~~~~~f~~dm~~L~v~~p~~~~rvse--~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvss 685 (948)
++++|.+.|.+||++||| .+|.++|+++ |++.+..++++|.++|+ |+....++++...
T Consensus 70 ~~~~~~~~~~~~~~~lgi-~~d~~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~ 130 (500)
T 2d5b_A 70 FVDRVSGRFKRAWDLLGI-AYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSC 130 (500)
T ss_dssp HHHHHHHHHHHHHHHTTC-CCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTT
T ss_pred HHHHHHHHHHHHHHHhCC-cCCCCcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCc
Confidence 467899999999999999 5789999999 99999999999999999 9876555555544
No 12
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=99.90 E-value=7.5e-24 Score=242.61 Aligned_cols=229 Identities=16% Similarity=0.233 Sum_probs=151.8
Q ss_pred CCChHHHHHHHHHHHHHHhc--CCCCCCccccccc--cHHHHHHHHHHHHHHcCCeeee--CCcEEEeeccCCCCCCC--
Q psy6851 97 KIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSE--YIPEIVASYIEKIIANGLAYES--NGSVYFNVNAFDSQPNH-- 168 (948)
Q Consensus 97 g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe--~IpeII~~~I~~LI~~G~AYes--~GsVYFDv~~f~~~g~~-- 168 (948)
|+++.+++.++.+.|.+++. || .++.++|.|+ |++.++ +++++|+++|++|+. .|.+|++...|-.++.-
T Consensus 66 g~~~~~~~~~~~~~~~~~~~~lgi-~~d~~~~t~~~~~~~~~~-~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~~ 143 (497)
T 2csx_A 66 GISPKELVDRNAERFKKLWEFLKI-EYTKFIRTTDPYHVKFVQ-KVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELAE 143 (497)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHTTC-CCSEEEETTSHHHHHHHH-HHHHHHHHTTCEEEEEC-------------------
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCC-cCCCCccCCCHHHHHHHH-HHHHHHHHCCCEEecceeeccCcccCeEccHHHhcc
Confidence 44455555566667776666 99 6889999999 999999 799999999999986 67778887777542110
Q ss_pred ------------------CccccCC------------cccccc---cc-----ccCC--C-----CcCCCCCCCcccCCC
Q psy6851 169 ------------------YYAKLVP------------EAYGDT---KT-----LQEG--E-----VRGYPPWPARIEGLA 203 (948)
Q Consensus 169 ------------------~YgKL~P------------~DFaLW---K~-----ak~g--E-----p~wespWg~~~~~m~ 203 (948)
-|-|++. .++... +. .++| + |.|..+||.|++
T Consensus 144 ~~~c~~~~~~~~~~~~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~Dw~isR~~~~~~WG~~iP--- 220 (497)
T 2csx_A 144 DHTCPIHQKKCEYIKEPSYFFRLSKYQDKLLELYEKNPEFIQPDYRRNEIISFVKQGLKDLSVTRPRSRVKWGIPVP--- 220 (497)
T ss_dssp --------------CCEEEEECTTSSHHHHHHHHHHCTTSBCSHHHHHHHHHHHHHCCCCEECEEETTTCCSSEEET---
T ss_pred CCCCCCCCCCCeEEecCceEEEcHHHHHHHHHHHHhCCCeeCcHHHHHHHHHHHhcCCccccccccCCCCCCceecC---
Confidence 0011110 001000 00 0122 3 557889997542
Q ss_pred CCCCCCCcceeE---------ee---c------cCccccccccccCCccccc---------------cccccEEEcccch
Q psy6851 204 DETPNRLKYHIF---------FY---G------TRETGICRQDELFPYTEFK---------------DKYGKVRVHLSQK 250 (948)
Q Consensus 204 ~~~~GRPGWHIE---------cL---G------~~dih~GG~DL~FPHHEne---------------~h~G~l~i~geKM 250 (948)
+.|||||+ |. . +.|+|++|.|++||||+++ .|+|+|.++|+||
T Consensus 221 ----~~~~~~i~vW~ds~~~~~s~~~~~~~~~~p~di~~~G~D~~~~H~~~~~a~l~~~g~~~~~~~~~~G~v~~~G~KM 296 (497)
T 2csx_A 221 ----FDPEHTIYVWFDALFNYISALEDKVEIYWPADLHLVGKDILRFHTVYWPAFLMSLGYELPKKVFAHGWWTVEGKKM 296 (497)
T ss_dssp ----TEEEEEECSHHHHHTHHHHTTTTTHHHHCSCSCEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCEESSSSBC
T ss_pred ----CCCCceEEEecccchhhcccCCCcchhhCCceEEEeecchhHhHHHHHHHHHHHcCCCCCcEEEECcEEEeCCcee
Confidence 34599998 41 1 2389999999999999974 4689999999999
Q ss_pred hhcchhHHHHHHH----------HHHHH-HHHhh-cCCChhhhHH-------------HHhhHH-------------HhH
Q psy6851 251 QQSLKLVVIMKEF----------FLNVK-DHIRN-LKFPATTVSS-------------FEKWTQ-------------ADL 292 (948)
Q Consensus 251 SKSLGN~vti~ef----------~l~ls-~hyR~-l~~s~~~l~~-------------~~r~~~-------------ad~ 292 (948)
|||+||+|++.++ |.+++ .+|++ ++|+.+.+.. +.|+.. .+.
T Consensus 297 SKS~GN~i~~~dli~~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~~~l~n~~~R~~~~~~~~~~~~~~~~~d~ 376 (497)
T 2csx_A 297 SKTLGNVVDPYEVVQEYGLDEVRYFLLREVPFGQDGDFSKKAILNRINGELANEIGNLYSRVVNMAHKFLGGEVSGARDE 376 (497)
T ss_dssp CTTTTCCCCHHHHHHHHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHSTTCBCCCCCT
T ss_pred CCcCCCCCCHHHHHHHCCcHHHHHHHHhcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHH
Confidence 9999999987764 22255 78888 9999876532 223221 122
Q ss_pred HHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcC
Q psy6851 293 ELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRG 335 (948)
Q Consensus 293 eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~ 335 (948)
.+...+.++...|.++| |+|+++.|++.|+++++.+|.|++.
T Consensus 377 ~l~~~l~~~~~~v~~~~-~~~~~~~a~~~l~~l~~~~n~y~~~ 418 (497)
T 2csx_A 377 EYAKIAQESIKNYENYM-EKVNFYKAIEEILKFTSYLNKYVDE 418 (497)
T ss_dssp THHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHHHHh
Confidence 34456778889999999 9999999999999999999999863
No 13
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=99.89 E-value=8.7e-24 Score=241.83 Aligned_cols=235 Identities=11% Similarity=0.088 Sum_probs=158.6
Q ss_pred CCChHHHHHHHHHHHHHHhc--CCCCCCccccccc--cHHHHHHHHHHHHHHcCCeeee--CCcEEEeeccCCCCCCCCc
Q psy6851 97 KIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSE--YIPEIVASYIEKIIANGLAYES--NGSVYFNVNAFDSQPNHYY 170 (948)
Q Consensus 97 g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe--~IpeII~~~I~~LI~~G~AYes--~GsVYFDv~~f~~~g~~~Y 170 (948)
|+++.++++++.+.|.+++. || .++.++|.|+ |++.++ +++++|+++|++|+. .|.+|+++.+|-.++.-..
T Consensus 64 g~~~~~~~~~~~~~~~~~~~~lgi-~~d~~~~t~~~~~~~~~~-~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l~~ 141 (500)
T 2d5b_A 64 GEDPKAFVDRVSGRFKRAWDLLGI-AYDDFIRTTEERHKKVVQ-LVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELVE 141 (500)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTTC-CCSEEEETTSHHHHHHHH-HHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTSBT
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCC-cCCCCcccCCHHHHHHHH-HHHHHHHHCCCEEecceEEecCCCcCcccCchhccC
Confidence 44444555556666666666 99 6888999999 999999 799999999999986 5777777777754221000
Q ss_pred ------c-------------ccCC------------ccccccccc--------cCC--C-----CcCCCCCCCcccCCCC
Q psy6851 171 ------A-------------KLVP------------EAYGDTKTL--------QEG--E-----VRGYPPWPARIEGLAD 204 (948)
Q Consensus 171 ------g-------------KL~P------------~DFaLWK~a--------k~g--E-----p~wespWg~~~~~m~~ 204 (948)
| |++. .+|..++.. ++| + |.|..+||.|+++.+.
T Consensus 142 g~c~~~~~~v~~~~~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~iSRp~~~~~WG~piP~~~~ 221 (500)
T 2d5b_A 142 GLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWDEN 221 (500)
T ss_dssp TBCTTTCSBCEEEEEEEEEECGGGGHHHHHHHHHTCTTSEESHHHHHHHHHHHTSCCCCEECEEETTTCCSSCEETTEEE
T ss_pred CcCCCCCCeeeEEecCceEEEcHHHHHHHHHHHHhCCCeeCCHHHHHHHHHHHhcCCCCeecccccccccCccccCCCCC
Confidence 0 1100 022222211 122 2 3367789974431000
Q ss_pred --------CC---CCCCcceeEe-----eccCccccccccccCCccccc---------------cccccEEE-cccchhh
Q psy6851 205 --------ET---PNRLKYHIFF-----YGTRETGICRQDELFPYTEFK---------------DKYGKVRV-HLSQKQQ 252 (948)
Q Consensus 205 --------~~---~GRPGWHIEc-----LG~~dih~GG~DL~FPHHEne---------------~h~G~l~i-~geKMSK 252 (948)
.+ -.--|||+|| ++. |+|++|.|++||||.++ .|+|+|.+ +|+||||
T Consensus 222 ~v~~vWfds~~~y~~~~g~~~~~~~~~~~p~-di~~~G~D~~~fh~~~~~a~~~~~g~~~~~~v~~~G~v~~~~G~KMSK 300 (500)
T 2d5b_A 222 HVTFVWFDALLNYVSALDYPEGEAYRTFWPH-AWHLIGKDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSK 300 (500)
T ss_dssp EEECHHHHHHTHHHHTTTTTTCHHHHHHGGG-EEEEEEGGGHHHHHTHHHHHHHHHTCCCCSEEEEECCEECTTSSCCCT
T ss_pred CeeEEccccchhhHHHcCCCCCchHHHcCCC-eEEEEeechhhhHHHHHHHHHHHcCCCCCcEEEECceEEeCCCCcccc
Confidence 00 0001799987 333 89999999999999974 56799999 9999999
Q ss_pred cchhHHHHHHH----------HHHHH-HHHhh-cCCChhhhHHH-------------HhhHHH-------------hHHH
Q psy6851 253 SLKLVVIMKEF----------FLNVK-DHIRN-LKFPATTVSSF-------------EKWTQA-------------DLEL 294 (948)
Q Consensus 253 SLGN~vti~ef----------~l~ls-~hyR~-l~~s~~~l~~~-------------~r~~~a-------------d~eL 294 (948)
|+||+|++.++ |.+++ .+|++ ++|+.+.+... .|.... +..+
T Consensus 301 S~GN~i~p~d~i~~~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~l 380 (500)
T 2d5b_A 301 TLGNVVDPFALLEKYGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQRTRAMLFRFAEGRIPEPVAGEE 380 (500)
T ss_dssp TTTCCCCHHHHHHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTBCCCCCCCGG
T ss_pred cCCCCCCHHHHHHhcCcHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHH
Confidence 99999987764 22254 68888 99998765321 121110 0123
Q ss_pred hHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcC
Q psy6851 295 STRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRG 335 (948)
Q Consensus 295 ~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~ 335 (948)
...+.++.+.|.++| |+|+++.|++.|+++++.+|.|++.
T Consensus 381 ~~~l~~~~~~v~~a~-~~~~~~~a~~~l~~l~~~~n~y~~~ 420 (500)
T 2d5b_A 381 LAEGTGLAGRLRPLV-RELKFHVALEEAMAYVKALNRYINE 420 (500)
T ss_dssp GGGGGGHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHHHHh
Confidence 334566788999999 9999999999999999999999874
No 14
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=99.88 E-value=2.8e-24 Score=247.66 Aligned_cols=202 Identities=16% Similarity=0.096 Sum_probs=123.3
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCeeecccc--cHHHHHHHHhCcccCCC-cccCCcccccCCCCCccccccCCCCCccccc
Q psy6851 627 LPKHWEAEFHKDMADLNVLPPTVLTRVSE--YIPEIVASAQTPKPAAA-KKAESSSDDDSSSEDEKPAVKAPAKPVAHAA 703 (948)
Q Consensus 627 ~~~~~~~~f~~dm~~L~v~~p~~~~rvse--~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvssede~pa~k~~~k~~~~~~ 703 (948)
++++|.++|.++|++|||. ++.+.|+++ |++.++.++++|.++|+ |+.++.|||+++++.
T Consensus 79 ~~~~~~~~~~~~~~~lgi~-~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t---------------- 141 (524)
T 2x1l_A 79 LARRNSDVFQRLQEKLNIS-FDRFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDER---------------- 141 (524)
T ss_dssp HHHHHHHHHHHHHHHTTCC-CSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTE----------------
T ss_pred HHHHHHHHHHHHHHHcCCc-CCCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCc----------------
Confidence 4568999999999999994 689999999 99999999999999999 999999999998731
Q ss_pred chhhhhhcCCCCCCCCCCCCCCcCcCCCCcccccccC-hhhhhhcCCC-CCCCCCCCCCcccccCCCCchhhccCCCCCC
Q psy6851 704 EPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAK-PAAAKKAESS-SDDDSSSEDEKPAVKAPAKPVAQAAKPGDLS 781 (948)
Q Consensus 704 ~~~~akk~eSSsd~~ssse~e~~a~~~~~k~~~~a~~-~~~~k~~~ss-Sd~~Sssede~p~~k~~~~~~~~~~~~~~~~ 781 (948)
+-+..+- . . ...++..+...+ +.-.....+= -.. + .-.+.. ......+...+.
T Consensus 142 -------------~l~~~ev-~-~-g~~G~~c~~~~g~~v~~~~~~qwF~~l--~-~~~~~l------~~~~~~~~~~i~ 196 (524)
T 2x1l_A 142 -------------FFTENET-T-E-QPDGTRIATETGAPVTWTEEQTYFFRL--S-AYTDRL------LALYEEHPEFIG 196 (524)
T ss_dssp -------------EECGGGE-E-E-CTTSCEEETTTCCBEEEEEEEEEEECG--G-GSHHHH------HHHHHHCGGGEE
T ss_pred -------------cccHHHh-c-c-CCCCCccccccCCcceEEecCCeEeeH--H-HHHHHH------HHHHHhCCCeeC
Confidence 0000000 0 0 000000000000 0000000000 000 0 000000 000000000000
Q ss_pred cc----c--cccCCCCCCcce------eeccCCCCCc-----c-cCCC----CCCCCchhHHHHHHHHhhcCCCceeecC
Q psy6851 782 SQ----E--ASEKRSPNDFAL------WKKSKAGEPW-----W-SSPW----GEGRPGWHIECSVMASAVLGPQLDIHTG 839 (948)
Q Consensus 782 ~~----~--~~~K~~~~DfaL------wk~~k~~ep~-----w-~spw----g~GrPgWHieCs~m~~~~lg~~~dih~G 839 (948)
.+ . +--+++..|+++ |....|+++. | +|+| |.|+|| ||++|...++ ++|||+|
T Consensus 197 p~~~~~~~~~~~~~~l~Dw~iSRqr~~WG~~iP~~~~~~~yvWfds~~~~~~~~g~p~---~~~~~~~~~~--p~di~~~ 271 (524)
T 2x1l_A 197 PDARRNEIVSFVSGGLKDLSISRTTFDWGVPVPDHPDHVMYVWVDALTNYLTGVGFPD---TESESFRRYW--PADLHMI 271 (524)
T ss_dssp SHHHHHHHHHHHTTCCCCEECEESSCCSSCEETTEEEEEECHHHHHHTHHHHTTTTTC---TTSHHHHHHC--SCSEEEE
T ss_pred CHHHHHHHHHHHHcCCcccceECCCCCcCccCCCCCCCEEEEecCCchHHHHHcCCCC---CchHHHHhhC--CCeEEEE
Confidence 00 0 011355678887 5444454432 4 8888 788888 8999999998 4899999
Q ss_pred CCCCCCCCChhHHHHHhccCCCC-----------CCCccccchhhhH
Q psy6851 840 GVDLKFPHHDNELAQAEGLPTHD-----------QEGKELSKGLAKK 875 (948)
Q Consensus 840 G~Dl~FPHH~ne~aq~e~~~~~~-----------~~g~kmsKsl~n~ 875 (948)
|.|++||||.+++||++++.... .+|+|||||+||+
T Consensus 272 G~D~~~fh~~~~~a~l~~~g~~~~~~v~~hG~v~~~G~KMSKS~GN~ 318 (524)
T 2x1l_A 272 GKDIIRFHTVYWPAFLMSAGLPLPKRIFAHGWLLNRGEKMSKSIGNV 318 (524)
T ss_dssp EGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCEEECSCSEETTTEES
T ss_pred eechhHhHHHHHHHHHHHCCCCCCcEEEECcEEEeCCcccCCcCCCC
Confidence 99999999999999998752211 6999999999999
No 15
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=99.85 E-value=1.1e-21 Score=226.19 Aligned_cols=233 Identities=12% Similarity=0.100 Sum_probs=154.9
Q ss_pred CCChHHHHHHHHHHHHHHhc--CCCCCCccccccc--cHHHHHHHHHHHHHHcCCeeeeCCcEEEeecc--CCCCCCCCc
Q psy6851 97 KIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSE--YIPEIVASYIEKIIANGLAYESNGSVYFNVNA--FDSQPNHYY 170 (948)
Q Consensus 97 g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe--~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~--f~~~g~~~Y 170 (948)
|+++.++++++...|.+++. || .++.+.|.|+ |++.++ +++++|.++|++|+.+|.|||++.. |..++.-.+
T Consensus 73 g~~~~~~~~~~~~~~~~~~~~lgi-~~d~~~~t~~~~~~~~v~-~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~ 150 (524)
T 2x1l_A 73 GIPAAELARRNSDVFQRLQEKLNI-SFDRFIRTSDADHYEASK-AIWKRMADAGDIYLDAYKGWYSIRDERFFTENETTE 150 (524)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTTC-CCSEEEETTSHHHHHHHH-HHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCC-cCCCCeecCCHHHHHHHH-HHHHHHHHCCCEEeeeeeeeccCccCccccHHHhcc
Confidence 44445555556666766666 99 6789999999 999999 7999999999999999999999875 533211001
Q ss_pred c---c----cCCccc------------cccc-----cc--------------------cCCCCcC-----CCCCCCcccC
Q psy6851 171 A---K----LVPEAY------------GDTK-----TL--------------------QEGEVRG-----YPPWPARIEG 201 (948)
Q Consensus 171 g---K----L~P~DF------------aLWK-----~a--------------------k~gEp~w-----espWg~~~~~ 201 (948)
| + ++.... ..|+ .. ..+-..| ..+||.++++
T Consensus 151 g~~G~~c~~~~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~~~i~p~~~~~~~~~~~~~~l~Dw~iSRqr~~WG~~iP~ 230 (524)
T 2x1l_A 151 QPDGTRIATETGAPVTWTEEQTYFFRLSAYTDRLLALYEEHPEFIGPDARRNEIVSFVSGGLKDLSISRTTFDWGVPVPD 230 (524)
T ss_dssp CTTSCEEETTTCCBEEEEEEEEEEECGGGSHHHHHHHHHHCGGGEESHHHHHHHHHHHTTCCCCEECEESSCCSSCEETT
T ss_pred CCCCCccccccCCcceEEecCCeEeeHHHHHHHHHHHHHhCCCeeCCHHHHHHHHHHHHcCCcccceECCCCCcCccCCC
Confidence 1 0 111000 0000 00 0111111 1258876542
Q ss_pred CCC--------------CCCCCCcceeEe---e---ccCccccccccccCCccccc---------------cccccEEEc
Q psy6851 202 LAD--------------ETPNRLKYHIFF---Y---GTRETGICRQDELFPYTEFK---------------DKYGKVRVH 246 (948)
Q Consensus 202 m~~--------------~~~GRPGWHIEc---L---G~~dih~GG~DL~FPHHEne---------------~h~G~l~i~ 246 (948)
-+. .+.|+|+ || + =+.|+|++|.|++||||.++ .++|+|.++
T Consensus 231 ~~~~~~yvWfds~~~~~~~~g~p~---~~~~~~~~~~p~di~~~G~D~~~fh~~~~~a~l~~~g~~~~~~v~~hG~v~~~ 307 (524)
T 2x1l_A 231 HPDHVMYVWVDALTNYLTGVGFPD---TESESFRRYWPADLHMIGKDIIRFHTVYWPAFLMSAGLPLPKRIFAHGWLLNR 307 (524)
T ss_dssp EEEEEECHHHHHHTHHHHTTTTTC---TTSHHHHHHCSCSEEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCEEEC
T ss_pred CCCCEEEEecCCchHHHHHcCCCC---CchHHHHhhCCCeEEEEeechhHhHHHHHHHHHHHCCCCCCcEEEECcEEEeC
Confidence 110 0345665 33 1 02389999999999999974 235999999
Q ss_pred ccchhhcchhHHHHHHH----------HHHHH-HHHhh-cCCChhhhHHH-------------HhhH-------------
Q psy6851 247 LSQKQQSLKLVVIMKEF----------FLNVK-DHIRN-LKFPATTVSSF-------------EKWT------------- 288 (948)
Q Consensus 247 geKMSKSLGN~vti~ef----------~l~ls-~hyR~-l~~s~~~l~~~-------------~r~~------------- 288 (948)
|+|||||+||+|++.++ |.+++ .+|++ ++|+.+.+... .|..
T Consensus 308 G~KMSKS~GN~v~p~d~i~~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~n~l~n~~~r~~~~~~~~~~~~~~~ 387 (524)
T 2x1l_A 308 GEKMSKSIGNVVDPVNLVDTFGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLANELGNLAQRSLSMVAKNLGAAVPD 387 (524)
T ss_dssp SCSEETTTEESSCHHHHHHHHCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHSTTBCCC
T ss_pred CcccCCcCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 99999999999987764 22254 78888 88988754311 1111
Q ss_pred -----HHhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcC
Q psy6851 289 -----QADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRG 335 (948)
Q Consensus 289 -----~ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~ 335 (948)
..+..+...+.++.+.|.++| |+|+++.|++.|+++++.+|.|++.
T Consensus 388 ~~~~~~~d~~l~~~l~~~~~~v~~a~-~~~~~~~a~~~l~~l~~~~n~y~~~ 438 (524)
T 2x1l_A 388 PGEFTDEDTALLAAADALLERVREHF-DVPAMHLALEAIWSVLGAANRYFSA 438 (524)
T ss_dssp CCCCCHHHHHHHHHHHTHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 012234455677889999999 9999999999999999999999863
No 16
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=99.82 E-value=6.3e-22 Score=232.18 Aligned_cols=165 Identities=12% Similarity=0.024 Sum_probs=111.8
Q ss_pred cccHHHHHHHHHHHHhhcCCCCCCeeeccccc--HHHHHHHHhCcccCCC-c-----ccCCcccccCCCCCccccccCCC
Q psy6851 625 ATLPKHWEAEFHKDMADLNVLPPTVLTRVSEY--IPEIVASAQTPKPAAA-K-----KAESSSDDDSSSEDEKPAVKAPA 696 (948)
Q Consensus 625 ~~~~~~~~~~f~~dm~~L~v~~p~~~~rvse~--i~~ii~~i~~l~~~g~-Y-----~~~gsvyfdvssede~pa~k~~~ 696 (948)
..+...+.+.|.+|+++|||.. |.++|.|+| .+.|.+++++|.++|+ | +.+|.+|+++++
T Consensus 213 ~~~~~~~~~~~~~~~~~LgI~~-D~~~~es~~~~~~~v~~~~~~L~~kG~~y~~~~g~~~G~~~~~~~~----------- 280 (592)
T 1iq0_A 213 REEVNRILLAQMATMHALNARY-DLLVWESDIVRAGLLQKALALLEQSPHVFRPREGKYAGALVMDASP----------- 280 (592)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCC-SEEEEHHHHHHTTHHHHHHHHHTTSTTEECCSSSTTTTCEEEECTT-----------
T ss_pred HHHHHHHHHHHHHHHHHcCCEe-EEeccCCcccccchHHHHHHHHHHCCCcccCcccCcCCCEEEechh-----------
Confidence 5678899999999999999986 999999998 8999999999999999 9 789999998766
Q ss_pred CCcccccchhhhhhcCCCCCCCCCCCCCCcCcCCCCcccccccChhhhhhcCCCCCCCCCCCCCcccccCCCCchhhccC
Q psy6851 697 KPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAK 776 (948)
Q Consensus 697 k~~~~~~~~~~akk~eSSsd~~ssse~e~~a~~~~~k~~~~a~~~~~~k~~~ssSd~~Sssede~p~~k~~~~~~~~~~~ 776 (948)
+.. +. .-+.... .+ ||
T Consensus 281 --------------------~g~--~~------~l~~~vi--~k----------sd------------------------ 296 (592)
T 1iq0_A 281 --------------------VIP--GL------EDPFFVL--LR----------SN------------------------ 296 (592)
T ss_dssp --------------------TSC--SC------SCCEEEE--EC----------TT------------------------
T ss_pred --------------------cCC--CC------CCCceEE--Ee----------cC------------------------
Confidence 320 00 0000000 00 01
Q ss_pred CCCCCccccccCCCCCCc--ceee-------ccCCCCCcccCCCCCCCCchhHHHHHHHHhhcCCCceeecCCCCCCCCC
Q psy6851 777 PGDLSSQEASEKRSPNDF--ALWK-------KSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPH 847 (948)
Q Consensus 777 ~~~~~~~~~~~K~~~~Df--aLwk-------~~k~~ep~w~spwg~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FPH 847 (948)
|.. .+ ...|+ ++|| ..+ ++|.+||| ||||||||++|....++..|+||+++-++.||+
T Consensus 297 -G~~----~Y---~~~D~a~~~~Kl~l~~~~~~~---~~~~~p~~--r~~w~~~g~~~~~~~~~~~iyV~g~~h~~~~~~ 363 (592)
T 1iq0_A 297 -GTA----TY---YAKDIAFQFWKMGILEGLRFR---PYENPYYP--GLRTSAPEGEAYTPKAEETINVVDVRQSHPQAL 363 (592)
T ss_dssp -SCB----CH---HHHHHHHHHHHTTSSCCCEEE---ECCCSSCT--TCEEEEEEEEECCCCCSEEEEEEESSSCCCHHH
T ss_pred -Cce----EE---ecchHHHHHHHhhhhhhhhhh---hhhcCcch--hhcccccCcccCCCCCCEEEEEEeccHHHHHHH
Confidence 000 00 12244 8886 333 47999997 999999999998888999999999976666665
Q ss_pred ChhHHHHHhcc---------CCC---CCCCccccchhhhH--hhhH
Q psy6851 848 HDNELAQAEGL---------PTH---DQEGKELSKGLAKK--LKKL 879 (948)
Q Consensus 848 H~ne~aq~e~~---------~~~---~~~g~kmsKsl~n~--l~~~ 879 (948)
+.+=+ ++-++ ..+ .++|+|||||+||+ |..+
T Consensus 364 ~~~~~-~alG~~~~~~~~~H~~~g~v~~~g~KMSKr~Gn~v~l~dl 408 (592)
T 1iq0_A 364 VRAAL-ALAGYPALAEKAHHLAYETVLLEGRQMSGRKGLAVSVDEV 408 (592)
T ss_dssp HHHHH-HHTTCHHHHTTEEEEEECCEEETTBCSCC----CCBHHHH
T ss_pred HHHHH-HHcCCCCCCCcEEEEEeeEEEcCCCcccCCCCCccCHHHH
Confidence 54322 11111 000 17899999999999 4554
No 17
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=99.82 E-value=2.7e-20 Score=218.39 Aligned_cols=246 Identities=11% Similarity=0.052 Sum_probs=173.3
Q ss_pred HhcCCChHHHHHHHHHHHHHHhc--CCCCCCcccccccc--HHHHHHHHHHHHHHcCCee-----eeCCcEEEeeccCCC
Q psy6851 94 AQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSEY--IPEIVASYIEKIIANGLAY-----ESNGSVYFNVNAFDS 164 (948)
Q Consensus 94 ~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~--IpeII~~~I~~LI~~G~AY-----es~GsVYFDv~~f~~ 164 (948)
.+.|.. +++...+.+.|.+++. ||.. +.++|.|+| ++.|. ++|++|.++|++| +.+|.+||++..|.+
T Consensus 207 ~e~g~~-~~~~~~~~~~~~~~~~~LgI~~-D~~~~es~~~~~~~v~-~~~~~L~~kG~~y~~~~g~~~G~~~~~~~~~g~ 283 (592)
T 1iq0_A 207 LERGEL-REEVNRILLAQMATMHALNARY-DLLVWESDIVRAGLLQ-KALALLEQSPHVFRPREGKYAGALVMDASPVIP 283 (592)
T ss_dssp HHTTTT-HHHHHHHHHHHHHHHHHTTCCC-SEEEEHHHHHHTTHHH-HHHHHHTTSTTEECCSSSTTTTCEEEECTTTSC
T ss_pred CCchHH-HHHHHHHHHHHHHHHHHcCCEe-EEeccCCcccccchHH-HHHHHHHHCCCcccCcccCcCCCEEEechhcCC
Confidence 444553 8888888889988887 9965 999999999 88999 7999999999999 889999999998853
Q ss_pred CCCCCcccc-----C------Cccc--cccc-------cccCCCCcCCCCCCCcccCCCCCCCCCCcceeEe----ecc-
Q psy6851 165 QPNHYYAKL-----V------PEAY--GDTK-------TLQEGEVRGYPPWPARIEGLADETPNRLKYHIFF----YGT- 219 (948)
Q Consensus 165 ~g~~~YgKL-----~------P~DF--aLWK-------~ak~gEp~wespWg~~~~~m~~~~~GRPGWHIEc----LG~- 219 (948)
... -+.+ + ..|+ .+|| ..+ +.|.+||| |||||+|| +|.
T Consensus 284 ~~~--l~~~vi~ksdG~~~Y~~~D~a~~~~Kl~l~~~~~~~---~~~~~p~~------------r~~w~~~g~~~~~~~~ 346 (592)
T 1iq0_A 284 GLE--DPFFVLLRSNGTATYYAKDIAFQFWKMGILEGLRFR---PYENPYYP------------GLRTSAPEGEAYTPKA 346 (592)
T ss_dssp SCS--CCEEEEECTTSCBCHHHHHHHHHHHHTTSSCCCEEE---ECCCSSCT------------TCEEEEEEEEECCCCC
T ss_pred CCC--CCceEEEecCCceEEecchHHHHHHHhhhhhhhhhh---hhhcCcch------------hhcccccCcccCCCCC
Confidence 110 0101 1 2344 6886 333 24677764 79999999 322
Q ss_pred C---ccccccccccCCcccc-------------cccc--ccEEEcccchhhcchhHHHHHHHH-----------------
Q psy6851 220 R---ETGICRQDELFPYTEF-------------KDKY--GKVRVHLSQKQQSLKLVVIMKEFF----------------- 264 (948)
Q Consensus 220 ~---dih~GG~DL~FPHHEn-------------e~h~--G~l~i~geKMSKSLGN~vti~ef~----------------- 264 (948)
. +++++++++-||++.+ ..|. |+|+++|+|||||+||+|++.+++
T Consensus 347 ~~~iyV~g~~h~~~~~~~~~~~~alG~~~~~~~~~H~~~g~v~~~g~KMSKr~Gn~v~l~dll~~~~~~~~~~~~~~~~~ 426 (592)
T 1iq0_A 347 EETINVVDVRQSHPQALVRAALALAGYPALAEKAHHLAYETVLLEGRQMSGRKGLAVSVDEVLEEATRRARAIVEEKNPD 426 (592)
T ss_dssp SEEEEEEESSSCCCHHHHHHHHHHTTCHHHHTTEEEEEECCEEETTBCSCC----CCBHHHHHHHHHHHHHHHHHHHCTT
T ss_pred CEEEEEEeccHHHHHHHHHHHHHHcCCCCCCCcEEEEEeeEEEcCCCcccCCCCCccCHHHHHHHHHHHHHHHHHhhCCC
Confidence 2 5788888888887653 1355 789999999999999998765433
Q ss_pred ------------------HHHHHHHhh-cCCChhhhH------------HHHhhHH------------------HhHHHh
Q psy6851 265 ------------------LNVKDHIRN-LKFPATTVS------------SFEKWTQ------------------ADLELS 295 (948)
Q Consensus 265 ------------------l~ls~hyR~-l~~s~~~l~------------~~~r~~~------------------ad~eL~ 295 (948)
..++.++++ ++|+.+.+. ++.|... .+.+|.
T Consensus 427 ~~~~e~~a~~vg~~aiRyf~L~~~~~~~~~Fd~d~~~~~~~~~~~ylqya~aR~~sil~k~~~~~~~~~~l~~~~e~~L~ 506 (592)
T 1iq0_A 427 HPDKEEAARMVALGAIRFSMVKTEPKKQIDFRYQEALSFEGDTGPYVQYAHARAHSILRKAGEWGAPDLSQATPYERALA 506 (592)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHSCTTSCEEECHHHHHCSSSSSHHHHHHHHHHHHHHHHHHCCCCCCCGGGCCHHHHHHH
T ss_pred CCcHHHHHHhhcHHHHHHHHHhcCCCCCCeecHHHHHHHhccchHHHHHHHHHHHHHHHhhcccCCCccCCCCHHHHHHH
Confidence 225666766 777765432 1122211 123344
Q ss_pred HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcCC-------C------C-----HHHHHHHHHHHHHHHhHcc
Q psy6851 296 TRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGT-------P------N-----QLLLRDIGAYVTKILTVFG 357 (948)
Q Consensus 296 ~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~~-------~------~-----~~lL~~i~~~V~~mL~VLG 357 (948)
..+.++.+.|..|+ ++++++.++..|++|++..|+|.+.. . . ..++..+...+...|.+||
T Consensus 507 ~~l~~~~~~v~~a~-~~~~p~~~~~yl~~La~~fn~fy~~~~~~~~~~~vl~~~~~~~~~RL~L~~a~~~vl~~~l~lLG 585 (592)
T 1iq0_A 507 LDLLDFEEAVLEAA-EERTPHVLAQYLLDLAASWNAYYNARENGQPATPVLTAPEGLRELRLSLVQSLQRTLATGLDLLG 585 (592)
T ss_dssp HHHTTHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHHHCEETTEESSCSTTSCTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHHhccccccCCceeCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 55667889999999 89999999999999999999988764 1 1 1234556667788899999
Q ss_pred ccc
Q psy6851 358 CIG 360 (948)
Q Consensus 358 L~~ 360 (948)
|..
T Consensus 586 i~~ 588 (592)
T 1iq0_A 586 IPA 588 (592)
T ss_dssp CCC
T ss_pred CCc
Confidence 864
No 18
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=99.81 E-value=6.2e-20 Score=212.02 Aligned_cols=237 Identities=14% Similarity=0.127 Sum_probs=155.0
Q ss_pred cCCChHHHHHHHHHHHHHHhc--CCCCCCcccccc--ccHHHHHHHHHHHHHHcCCeeeeCCcEEEeecc--C-------
Q psy6851 96 KKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVS--EYIPEIVASYIEKIIANGLAYESNGSVYFNVNA--F------- 162 (948)
Q Consensus 96 ~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvT--e~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~--f------- 162 (948)
.|+++.++++++.+.|.+++. ||. ++.+.|.+ +|+..++ +++.+|.++|++|...+.|||+++. |
T Consensus 69 ~g~~~~e~~~~~~~~~~~~~~~lgi~-~D~~~~T~~~~~~~~v~-~~f~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~ 146 (542)
T 3u1f_A 69 KQVSPYDFTTAVAGEFKKCFEQMDYS-IDYFIRTTNEQHKAVVK-ELWTKLEQKGDIYLGRYEGWYSISDESFLTPQNIT 146 (542)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTCC-CSEEEETTCHHHHHHHH-HHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEE
T ss_pred cCCCHHHHHHHHHHHHHHHHHHhCCc-cCcCccCCCHHHHHHHH-HHHHHHhhcCcEEecceeEEeeccCcccchhhhhh
Confidence 345555555555556665555 984 57777766 6999999 7999999999999999999999853 1
Q ss_pred ---CCCCCC------------------CccccCC------------ccccccccc--------cCCCC--------cCCC
Q psy6851 163 ---DSQPNH------------------YYAKLVP------------EAYGDTKTL--------QEGEV--------RGYP 193 (948)
Q Consensus 163 ---~~~g~~------------------~YgKL~P------------~DFaLWK~a--------k~gEp--------~wes 193 (948)
+.+|.. .|-+++. .++..++.. +.+-+ .|..
T Consensus 147 ~~~~~~g~~~~~~~~sg~~ve~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~l~Dw~ISRq~~~~~ 226 (542)
T 3u1f_A 147 DGVDKDGNPCKVSLESGHVVTWVSEENYMFRLSAFRERLLEWYHANPGCIVPEFRRREVIRAVEKGLPDLSVSRARATLH 226 (542)
T ss_dssp EEECTTSCEEEEETTTCCBEEEEEEEEEEECGGGGHHHHHHHHHHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGT
T ss_pred ccccccCccccccCCCCCcceeeccccceecchhHHHHHHHHHhhcccccCCchhhHhHhhhhhccccccCccccccCcC
Confidence 111110 0011110 001000000 01111 2556
Q ss_pred CCCCcccCCCC------------------CCCCCCcceeEee--------ccCccccccccccCCccccc----------
Q psy6851 194 PWPARIEGLAD------------------ETPNRLKYHIFFY--------GTRETGICRQDELFPYTEFK---------- 237 (948)
Q Consensus 194 pWg~~~~~m~~------------------~~~GRPGWHIEcL--------G~~dih~GG~DL~FPHHEne---------- 237 (948)
.||.|+++.+. ....+.|++.++. -+.|+|++|.|++|+|+.++
T Consensus 227 ~WGipiP~~~~~~~~vw~da~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~~p~d~~~~G~D~~~fh~~~~~a~l~~~g~~ 306 (542)
T 3u1f_A 227 NWAIPVPGNPDHXVYVWLDALTNYLTGSRLRVDESGKEVSLVDDFNELERFPADVHVIGKDILKFHAIYWPAFLLSAGLP 306 (542)
T ss_dssp TCSCEETTEEEEEECHHHHHHTHHHHHHTEEECTTSCEEEECSSGGGTTCCSCSEEEEEGGGHHHHHTHHHHHHHHHTCC
T ss_pred CCCCccCCCcCeeeeeeeccchhhhhhhhccccccCCcccccchhhhhcCCcceEEEecccccccccchhHHHHHhhccc
Confidence 78887765321 0123455665542 12379999999999998864
Q ss_pred -----cccccEEEcccchhhcchhHHHHHHH-----------HHHHHHHHhh-cCCChhhhHH-------------HHhh
Q psy6851 238 -----DKYGKVRVHLSQKQQSLKLVVIMKEF-----------FLNVKDHIRN-LKFPATTVSS-------------FEKW 287 (948)
Q Consensus 238 -----~h~G~l~i~geKMSKSLGN~vti~ef-----------~l~ls~hyR~-l~~s~~~l~~-------------~~r~ 287 (948)
.++|+|.++|+|||||+||+|...++ |++...+|++ ++|+.+.+.. +.|.
T Consensus 307 ~~~~v~~hg~l~~~G~KMSKSlGNvi~p~~~i~~ygaD~lR~~l~~~~~~~~d~~fs~~~~~~~~n~~l~n~l~N~~~r~ 386 (542)
T 3u1f_A 307 LPKKIVAHGWWTKDRKKISKSLGNVFDPVEKAEEFGYDALKYFLLRESGFSDDGDYSDKNMIARLNGELADTLGNLVMRC 386 (542)
T ss_dssp CCSCEEEECCCEETTBCCBTTTTBCCCHHHHHHHHCHHHHHHHHHHHCCTTSCCEECHHHHHHHHHHTTTTTHHHHHHHH
T ss_pred ccceeccccceecCCceeccccCCCCChhHHHhhcCchHHHHHHHhcCcccccccccHHHHHHHhhhHHHHHHHHHHHHH
Confidence 46799999999999999999876653 4422355777 8888765431 1121
Q ss_pred H-----------------HHhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcC
Q psy6851 288 T-----------------QADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRG 335 (948)
Q Consensus 288 ~-----------------~ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~ 335 (948)
. ..+..+...+.++...+.++| |+|+++.|+++|+++++.+|.|++.
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~~~~~~-~~~~~~~a~~~i~~~~~~~n~Y~~~ 450 (542)
T 3u1f_A 387 TSAKINVNGEWPSPAAYTEEDESLIQLIKDLPGTADHYY-LIPDIQKAIIAVFDVLRAINAYVTD 450 (542)
T ss_dssp HCTTTSTTSBCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcccCCCCccchhhHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 123445567788899999999 8999999999999999999999964
No 19
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=99.80 E-value=1.1e-20 Score=218.69 Aligned_cols=175 Identities=14% Similarity=0.048 Sum_probs=119.3
Q ss_pred HHHHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cccCCcccccCCCCCccccccCCCCCcccccchhhh
Q psy6851 630 HWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAA 708 (948)
Q Consensus 630 ~~~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvssede~pa~k~~~k~~~~~~~~~~a 708 (948)
.|++.+++||+.||+.+++..+++|+|++.+.+++++|+++|+ |. +|++..+=+ .....+. ..|
T Consensus 76 e~~~~I~edL~wLGl~wde~~~~qSer~~~~~~~a~~Li~~G~AY~-----c~ct~eel~-~~r~~~~-----~~g---- 140 (553)
T 1qtq_A 76 EYVESIKNDVEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYV-----DELTPEQIR-EYRGTLT-----QPG---- 140 (553)
T ss_dssp HHHHHHHHHHHHTTCCCSSSCEEGGGGHHHHHHHHHHHHHTTSEEE-----ECCCHHHHH-HHHCCSS-----SCC----
T ss_pred HHHHHHHHHHHHcCCCCCCCCeehcccHHHHHHHHHHHHHCCCcee-----cCCCHHHHH-HHhcccc-----cCC----
Confidence 5889999999999999999999999999999999999999999 95 444432100 0000000 000
Q ss_pred hhcCCCCCCCCCCCCCCcCcCCCCcccccccChhhhhhcCCCCCCCCCCCCCcccccCCCCchhhccCC---C--CCC--
Q psy6851 709 KKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKP---G--DLS-- 781 (948)
Q Consensus 709 kk~eSSsd~~ssse~e~~a~~~~~k~~~~a~~~~~~k~~~ssSd~~Sssede~p~~k~~~~~~~~~~~~---~--~~~-- 781 (948)
.++ .+-..++......-. .+..|+ | .++
T Consensus 141 --------~~~----------~~R~~s~ee~~~~fe---------------------------~m~~G~~~~g~~~lR~k 175 (553)
T 1qtq_A 141 --------KNS----------PYRDRSVEENLALFE---------------------------KMRAGGFEEGKACLRAK 175 (553)
T ss_dssp --------CCC----------TTTTCCHHHHHHHHH---------------------------HHHTTCSCTTSCEEEEC
T ss_pred --------CCC----------ccccCchhhhHhHHH---------------------------HHhCCCccCCceEEEEe
Confidence 000 011110000000000 011110 0 011
Q ss_pred ccccccCCCCCCcceeeccCCCCCcccCCCCCCCCchhHHHHHHHHhhcCCCceeecCCCCCCC---CCChhHHHHH---
Q psy6851 782 SQEASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKF---PHHDNELAQA--- 855 (948)
Q Consensus 782 ~~~~~~K~~~~DfaLwk~~k~~ep~w~spwg~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~F---PHH~ne~aq~--- 855 (948)
......+.++.||+|||..++++|.|.++| .|+|+||+.|+ +|+|.+||+++| |||+|+++|+
T Consensus 176 id~~~~~~~~~D~Vl~R~~~~~h~~~~d~w-~g~PtY~la~v----------vDDh~~GITHviRg~e~~~n~~~q~~l~ 244 (553)
T 1qtq_A 176 IDMASPFIVMRDPVLYRIKFAEHHQTGNKW-CIYPMYDFTHC----------ISDALEGITHSLCTLEFQDNRRLYDWVL 244 (553)
T ss_dssp SCTTCSSGGGSSCEEEEECCCCBTTTBTSC-SEEECHHHHHH----------HHHHHTTCSEEEEEGGGTTTHHHHHHHH
T ss_pred cccccCCCCCCCcEEEEecCCCCCccCCCC-ccccccccccE----------EEeccCCcceEeeccchhhhHHHHHHHH
Confidence 111345788999999999999999999999 79999999886 999999999999 9999999999
Q ss_pred hccCCC--C---------CCCccccchhhhH
Q psy6851 856 EGLPTH--D---------QEGKELSKGLAKK 875 (948)
Q Consensus 856 e~~~~~--~---------~~g~kmsKsl~n~ 875 (948)
+|+.-. + ++|.|||||++|.
T Consensus 245 ~alg~~~~P~~~~f~hLn~~g~KLSKR~~~~ 275 (553)
T 1qtq_A 245 DNITIPVHPRQYEFSRLNLEYTVMSKRKLNL 275 (553)
T ss_dssp HTSCCSCCCEEEEECCCCBTTSCCCHHHHHH
T ss_pred HHcCCCCCCCeEEEEeecCCCcccccccccc
Confidence 555211 1 7999999999984
No 20
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.79 E-value=7.9e-21 Score=219.97 Aligned_cols=170 Identities=12% Similarity=-0.003 Sum_probs=104.4
Q ss_pred HHHHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cccCCcccccCCCCCccccccCCCCCcccccchhhh
Q psy6851 630 HWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAA 708 (948)
Q Consensus 630 ~~~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvssede~pa~k~~~k~~~~~~~~~~a 708 (948)
.|++.|++||+.||+.+ +..+++|+|++.+++++++|+++|+ |. +|++..+ ..+ .
T Consensus 146 e~~~~I~edL~wLGl~w-d~~~~qSdr~~~y~~~~~~Li~~G~AY~-----c~cs~ee--i~~----------------~ 201 (553)
T 3aii_A 146 EAYDMIPADLEWLGVEW-DETVIQSDRMETYYEYTEKLIERGGAYV-----CTCRPEE--FRE----------------L 201 (553)
T ss_dssp THHHHHHHHHHHHTCCC-SEEEEGGGGHHHHHHHHHHHHHTTSEEE-----ECSCHHH--HHH----------------H
T ss_pred HHHHHHHHHHHHcCCCC-CCCcccccCHHHHHHHHHHHHHcCCcee-----CCCCHHH--HHH----------------H
Confidence 47889999999999997 7899999999999999999999999 95 4544331 000 0
Q ss_pred hhcCCCCCCCCCCCCCCcCcCCCCcccccccChhhhhhcCCCCCCCCCCCCCcccccCCCCchhhccCC-C--CCC--cc
Q psy6851 709 KKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKP-G--DLS--SQ 783 (948)
Q Consensus 709 kk~eSSsd~~ssse~e~~a~~~~~k~~~~a~~~~~~k~~~ssSd~~Sssede~p~~k~~~~~~~~~~~~-~--~~~--~~ 783 (948)
.... ..+ .|..++..... .. .+ .+..|. | .++ ..
T Consensus 202 r~~g----~~~----------~cR~~s~ee~l---~~-------------f~-----------~m~~G~~g~~~lR~k~d 240 (553)
T 3aii_A 202 KNRG----EAC----------HCRSLGFRENL---QR-------------WR-----------EMFEMKEGSAVVRVKTD 240 (553)
T ss_dssp HHTT----CCC----------GGGGCCHHHHH---HH-------------HH-----------HGGGSCTTSCEEEECCC
T ss_pred hhcC----CCC----------ccccCCHHHHH---HH-------------HH-----------HHhcCCcCceEEEEEcc
Confidence 0000 000 11111110000 00 00 011110 0 000 11
Q ss_pred ccccCCCCCCcceeeccCCCCCcccCCCCCCCCchhHHHHHHHHhhcCCCceeecCCCCCCCC---CChhHHHHH--hcc
Q psy6851 784 EASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFP---HHDNELAQA--EGL 858 (948)
Q Consensus 784 ~~~~K~~~~DfaLwk~~k~~ep~w~spwg~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FP---HH~ne~aq~--e~~ 858 (948)
....+.++.||+|||..++++|.|-..|. |+||||++|+ +|+|.+||+++|+ ||+|+.+|. .++
T Consensus 241 ~~~~n~~~~Dfvl~R~~~~~hp~~Gd~~~-g~PtYhfa~~----------vDD~~~GIThviRG~D~~~nt~~Q~~l~~a 309 (553)
T 3aii_A 241 LNHPNPAIRDWVSMRIVEAEHPRTGTRYR-VYPMMNFSVA----------VDDHLLGVTHVLRGKDHLANREKQEYLYRH 309 (553)
T ss_dssp TTCSSGGGTTCEEEEECCSCBTTTBTSCC-EEECHHHHHH----------HHHHHTTCCEEEC-----CHHHHHHHHHHH
T ss_pred cccCCCCCCCcEEEEecCCCCCccCCCce-eeeeeeeeee----------eeeccCCCceEeccHhhhhCHHHHHHHHHH
Confidence 12345678999999998888888555554 8999999994 8999999999999 999999999 333
Q ss_pred CCCC-----------CCCccccchhhhH
Q psy6851 859 PTHD-----------QEGKELSKGLAKK 875 (948)
Q Consensus 859 ~~~~-----------~~g~kmsKsl~n~ 875 (948)
.|.. ++|.|||||++|.
T Consensus 310 lG~~~P~y~H~~~L~~~g~KLSKR~~~~ 337 (553)
T 3aii_A 310 LGWEPPEFIHYGRLKMDDVALSTSGARE 337 (553)
T ss_dssp HTCCCCEEECCCCBC-------CHHHHH
T ss_pred cCCCCCeEEEeeEEecCCceechhhhhh
Confidence 3332 7899999999984
No 21
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=99.78 E-value=1.5e-20 Score=225.70 Aligned_cols=175 Identities=16% Similarity=0.064 Sum_probs=119.8
Q ss_pred HHHHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cccCCcccccCCCCCccccccCCCCCcccccchhhh
Q psy6851 630 HWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAA 708 (948)
Q Consensus 630 ~~~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvssede~pa~k~~~k~~~~~~~~~~a 708 (948)
.|++.|++||+.||+.+++..+++|+|++.+++++++||++|+ |. +|++..+=. .....+. ..|
T Consensus 116 e~~~~IledL~wLGl~wde~~~~qSer~d~y~e~a~~LI~~G~AY~-----c~ct~eel~-~~r~~~~-----~~G---- 180 (851)
T 2hz7_A 116 EYVDSIADDLKWLGLDWGEHFYYASDYFDRYYAYAEQLIRQGDAYV-----ESVSPEELS-RLRGNAT-----TPG---- 180 (851)
T ss_dssp HHHHHHHHHHHHHTCCCTTCEEEGGGGHHHHHHHHHHHHHTTSEEE-----ECSCHHHHH-HHHCBTT-----BCC----
T ss_pred HHHHHHHHHHHHcCCCCCCCcccHhhhHHHHHHHHHHHHHCCCcEe-----ecCCHHHHH-HHhcchh-----ccC----
Confidence 5889999999999999999999999999999999999999999 95 454432100 0000000 000
Q ss_pred hhcCCCCCCCCCCCCCCcCcCCCCcccccccChhhhhhcCCCCCCCCCCCCCcccccCCCCchhhccCC---C--CCC--
Q psy6851 709 KKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKP---G--DLS-- 781 (948)
Q Consensus 709 kk~eSSsd~~ssse~e~~a~~~~~k~~~~a~~~~~~k~~~ssSd~~Sssede~p~~k~~~~~~~~~~~~---~--~~~-- 781 (948)
..+ .|..+++...-..-. .+..|+ | .++
T Consensus 181 --------~~s----------~~R~ls~ee~l~~fe---------------------------~m~~G~~~~g~~vlR~K 215 (851)
T 2hz7_A 181 --------TPS----------PYRDRSVEENLDLLR---------------------------RMKAGEFADGEHVLRAK 215 (851)
T ss_dssp --------CCC----------TTTTCCHHHHHHHHH---------------------------HHHTTCSCTTSCEEEEC
T ss_pred --------CCc----------ccccCCHHHHhhHHH---------------------------HHhcCCcccCCeeEEEe
Confidence 000 011111100000000 011111 0 001
Q ss_pred ccccccCCCCCCcceeeccCCCCCcccCCCCCCCCchhHHHHHHHHhhcCCCceeecCCCCCCCC---CChhHHHHH---
Q psy6851 782 SQEASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFP---HHDNELAQA--- 855 (948)
Q Consensus 782 ~~~~~~K~~~~DfaLwk~~k~~ep~w~spwg~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FP---HH~ne~aq~--- 855 (948)
......+.++.||+|||..++++|.|.+|| .|+|+||++|+ +|.|.+||+++++ ||+|+.+|.
T Consensus 216 id~~~~~~~~~DfVl~R~~~~~h~~~gd~w-~g~PtYhfA~v----------VDD~~~GITHViRG~D~~~n~~~q~~l~ 284 (851)
T 2hz7_A 216 IDLTAPNMKLRDPVLYRIVNKPHFRTSDEW-HIYPAYDFEHP----------LQDAIEGVTHSMCSLEFVDNRAIYDWLM 284 (851)
T ss_dssp CCTTCSSGGGSSCEEEEECCCCBTTTBTSC-SEEECHHHHHH----------HHHHHHTCSEEEEEGGGTTTHHHHHHHH
T ss_pred ccccccCCCCCCcEEEEecCCCCCccCCCC-ccccccceeeE----------eeeccCCcceeecchhhhhChHHHHHHH
Confidence 111346788999999999999999999999 89999999998 7999999999999 999999998
Q ss_pred hccCCC--C---------CCCccccchhhhH
Q psy6851 856 EGLPTH--D---------QEGKELSKGLAKK 875 (948)
Q Consensus 856 e~~~~~--~---------~~g~kmsKsl~n~ 875 (948)
+++.-. + ++|.|||||++|.
T Consensus 285 ~alG~~~~P~~~~fahLn~~g~KLSKR~g~~ 315 (851)
T 2hz7_A 285 EKLNFDPRPHQYEFGRRGLEYTITSKRKLRE 315 (851)
T ss_dssp HHTTCSSCCEEEEECCEEETTCCCCHHHHHH
T ss_pred HHcCCCCCCCceEEEEecCCCcccccccccc
Confidence 555211 2 7999999999985
No 22
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=99.75 E-value=5.4e-19 Score=211.71 Aligned_cols=59 Identities=3% Similarity=-0.080 Sum_probs=54.6
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCeeecccc--cHHHHHHHHhCcccCCC-cccCCcccccCCCC
Q psy6851 627 LPKHWEAEFHKDMADLNVLPPTVLTRVSE--YIPEIVASAQTPKPAAA-KKAESSSDDDSSSE 686 (948)
Q Consensus 627 ~~~~~~~~f~~dm~~L~v~~p~~~~rvse--~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvsse 686 (948)
++.+|.+.|.++|++|||. +|.+.|+++ |+..+..++++|.++|+ |+....||||++++
T Consensus 70 ~~~~~~~~~~~~~~~lgis-~D~~~rT~d~~~~~~v~~~f~~L~~kG~iY~~~~~v~y~~~~~ 131 (722)
T 1rqg_A 70 IVDEFHEQIKITFQRAKIS-FDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDK 131 (722)
T ss_dssp HHHHHHHHHHHHHHHHTCC-CSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTT
T ss_pred HHHHHHHHHHHHHHHhCCC-CCCCeeCCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCC
Confidence 5678999999999999995 799999997 99999999999999999 99999999999884
No 23
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=99.75 E-value=6.6e-18 Score=202.36 Aligned_cols=230 Identities=13% Similarity=0.045 Sum_probs=154.5
Q ss_pred CCChHHHHHHHHHHHHHHhc--CCCCCCccccccc--cHHHHHHHHHHHHHHcCCeeeeCCcEEEeeccCCCC-------
Q psy6851 97 KIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSE--YIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQ------- 165 (948)
Q Consensus 97 g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe--~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~f~~~------- 165 (948)
|+++++++.++.+.|.+++. || .++.+.|.|+ |+..+. +++++|.++|++|...+.|||++....-.
T Consensus 64 G~~p~e~~~~~~~~~~~~~~~lgi-s~D~~~rT~d~~~~~~v~-~~f~~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~g 141 (722)
T 1rqg_A 64 GRSPREIVDEFHEQIKITFQRAKI-SFDFFGRTELPIHYKLSQ-EFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFVIG 141 (722)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHTC-CCSEEEETTSHHHHHHHH-HHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCCS
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCC-CCCCCeeCCCHHHHHHHH-HHHHHHHHCCCEEecceeeeecCCCCcCcchhhccc
Confidence 55555555555556665555 99 6898999886 999999 79999999999999999999998764100
Q ss_pred -----CC-CCcccc--------CCcc----------------------------------cc---ccccc---------c
Q psy6851 166 -----PN-HYYAKL--------VPEA----------------------------------YG---DTKTL---------Q 185 (948)
Q Consensus 166 -----g~-~~YgKL--------~P~D----------------------------------Fa---LWK~a---------k 185 (948)
+. +.||.+ +|.+ +. .|... +
T Consensus 142 tcP~c~~~~~~Gd~c~~~G~~l~~~~l~~p~~~r~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~wp~~~~~~~~~wl~ 221 (722)
T 1rqg_A 142 TCPYCGAEDQKGDQCEVCGRPLTPEILINPRCAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQPWKPNVKNMVLSWIE 221 (722)
T ss_dssp BCSSSCCSCCCTTTCSSSCCCCCTTSSBSCBCTTTCCBCEEEEEEEEEECGGGTHHHHHHHHHSSCCCHHHHHHHHHHHT
T ss_pred ccCccCCccCCcchhhhcccccChhhccCCcccCCCcEeEEEEeccEEEEhHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 00 123322 1100 00 24333 3
Q ss_pred CCCCcC----CCCCCCcccCCCCCCCCCCcce-----------eEe--------------------ec--cC---ccccc
Q psy6851 186 EGEVRG----YPPWPARIEGLADETPNRLKYH-----------IFF--------------------YG--TR---ETGIC 225 (948)
Q Consensus 186 ~gEp~w----espWg~~~~~m~~~~~GRPGWH-----------IEc--------------------LG--~~---dih~G 225 (948)
+|.+.| ..+||.++|.+ +.||| |+| .+ +. ++|++
T Consensus 222 ~gl~dw~ISR~~~WG~piP~~------~~g~~~~~iyvW~da~i~y~~~~~~~~~~~g~~~~~~~~w~~pd~~~~~~h~~ 295 (722)
T 1rqg_A 222 EGLEERAITRDLNWGIPVPLD------EEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFI 295 (722)
T ss_dssp TCCCCEECEECCSSSCBCSCC------CSSSTTCEECHHHHGGGHHHHHHHHHHHHTTCTTTTHHHHBCSSCCEEEEEEE
T ss_pred CCCcccceeccccCccccCcc------ccCCCCCEEEEEeccccchhhhHHHHHhhcCCchHHHhccCCCCCCCeeEEEc
Confidence 555566 77888644321 01565 433 11 21 27899
Q ss_pred cccccCCcccc-------------------------ccccccEEEcccchhhcchhHHHHHHH-----------HHHHHH
Q psy6851 226 RQDELFPYTEF-------------------------KDKYGKVRVHLSQKQQSLKLVVIMKEF-----------FLNVKD 269 (948)
Q Consensus 226 G~DL~FPHHEn-------------------------e~h~G~l~i~geKMSKSLGN~vti~ef-----------~l~ls~ 269 (948)
|.|++|+|.-. -.++|+|+++|+|||||+||+|+..++ |+ ++.
T Consensus 296 GkDii~fH~~~wpA~l~~~~~~l~~d~~rg~~~Pk~v~~hG~v~~~G~KMSKS~GNvV~p~d~i~~ygaDalR~~l-l~~ 374 (722)
T 1rqg_A 296 GKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWVHEFLDVFPADYLRYYL-TTI 374 (722)
T ss_dssp EGGGHHHHHTHHHHHHHTTCCBCSSSCCBCBCCCSBCCEECCEEETTEECBTTTTBSCBHHHHTTTSCHHHHHHHH-HHT
T ss_pred cccccccchhhhHHHHhccCCCcccccccCCCCCCEEEEeeeEEeCCeeeeeeCCCcCCHHHHHHhcCchHHHHHH-Hhc
Confidence 99999876431 135789999999999999999987764 44 444
Q ss_pred -HHhh-cCCChhhhHH---------H----HhhH------------------HHhHHHhHHHHHHHHHHHHHHhhcCChH
Q psy6851 270 -HIRN-LKFPATTVSS---------F----EKWT------------------QADLELSTRFIQTKNNVHAALCDNMDTR 316 (948)
Q Consensus 270 -hyR~-l~~s~~~l~~---------~----~r~~------------------~ad~eL~~~l~el~e~F~aAL~DDFNTP 316 (948)
+|++ ++|+++.+.. + .|.. ..+..+...+.++...+.++| ++|+++
T Consensus 375 ~~~~~D~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-e~~~f~ 453 (722)
T 1rqg_A 375 MPETRDSDFSFSDFKVRINEELVNNLGNFVHRALTFVNRYFDGVVPERGELDELDREALEEIEKAFKEVGELI-MNYRFK 453 (722)
T ss_dssp CCSSSCEEECHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHSTTBCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHH
T ss_pred CCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHH-HhcCHH
Confidence 7877 8888764311 1 1110 113334556677889999999 899999
Q ss_pred HHHHHHHHHHHHHHhhhcCC
Q psy6851 317 SALDSIRDCISQVNIYLRGT 336 (948)
Q Consensus 317 ~ALaaLfeLVraiN~yLd~~ 336 (948)
.|+.+|++|++.+|.|++..
T Consensus 454 ~A~~~i~~~~~~~n~Yi~~~ 473 (722)
T 1rqg_A 454 DALKRVMSLASFGNRYFDHK 473 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999753
No 24
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=99.74 E-value=2.5e-19 Score=207.01 Aligned_cols=59 Identities=10% Similarity=0.009 Sum_probs=53.5
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCeeeccc--ccHHHHHHHHhCcccCCC-cccCCcccccCCCC
Q psy6851 627 LPKHWEAEFHKDMADLNVLPPTVLTRVS--EYIPEIVASAQTPKPAAA-KKAESSSDDDSSSE 686 (948)
Q Consensus 627 ~~~~~~~~f~~dm~~L~v~~p~~~~rvs--e~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvsse 686 (948)
++++|.+.|.++|++|||.. |.+.|++ +|+..++.++++|.++|+ |+....|||+++++
T Consensus 76 ~~~~~~~~~~~~~~~lgi~~-D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~ 137 (542)
T 3u1f_A 76 FTTAVAGEFKKCFEQMDYSI-DYFIRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSISDE 137 (542)
T ss_dssp HHHHHHHHHHHHHHHHTCCC-SEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHHhCCcc-CcCccCCCHHHHHHHHHHHHHHhhcCcEEecceeEEeeccCc
Confidence 56789999999999999974 8888888 499999999999999999 99999999999873
No 25
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=99.73 E-value=1.7e-19 Score=208.68 Aligned_cols=157 Identities=13% Similarity=0.142 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHHhc--CCCCCCccccccc-cHH-HHHHHHHHHHHHcC----------------CeeeeCCcEEEeec
Q psy6851 101 SEMFKMETDKYSQFDE--TVLPPTVLTRVSE-YIP-EIVASYIEKIIANG----------------LAYESNGSVYFNVN 160 (948)
Q Consensus 101 ~el~~~~~~~f~~dm~--nV~~P~~~pRvTe-~Ip-eII~~~I~~LI~~G----------------~AYes~GsVYFDv~ 160 (948)
.++++.+.+.|.++|. || .|+++ |.|+ |++ .+. ++|++|+++| +||.. + ||++.
T Consensus 101 ~~~~~~~~~~~~~~l~~Lgi-~~D~~-~~se~~~~g~~~-~~i~~L~~~G~~iy~~~~~~~g~~~~~~y~~--~-~~~~~ 174 (523)
T 1irx_A 101 ESYAEHFMRKFEEEVEKLGI-EVDLL-YASELYKRGEYS-EEIRLAFEKRDKIMEILNKYREIAKQPPLPE--N-WWPAM 174 (523)
T ss_dssp SSHHHHHHHHHHHHHHTTTC-CCEEE-EHHHHHHTTTTH-HHHHHHHHTHHHHHHHHHHHHHHTTCCCCCT--T-CCSEE
T ss_pred HHHHHHHHHHHHHHHHHcCC-CceEE-echhhccchHHH-HHHHHHHHchHHHHHHHHhhccccccccccC--C-ceecc
Confidence 5566667778888887 99 78999 9999 999 899 7999999999 88865 3 99988
Q ss_pred cCCCCCCCCcccc---------CCccccccccccCCCCcCCCCC-CCcccCCCCCCCCCCcceeEe------eccCcccc
Q psy6851 161 AFDSQPNHYYAKL---------VPEAYGDTKTLQEGEVRGYPPW-PARIEGLADETPNRLKYHIFF------YGTRETGI 224 (948)
Q Consensus 161 ~f~~~g~~~YgKL---------~P~DFaLWK~ak~gEp~wespW-g~~~~~m~~~~~GRPGWHIEc------LG~~dih~ 224 (948)
.|.. .|+++ .|.+|.+ ++|++.|.++| | .||||||||| ||. ++++
T Consensus 175 ~~~~----~~~~~~~~~~~~~~~~~~f~~----~~g~~~~~d~~~G----------~g~~~w~~d~~~~~~~l~~-~vd~ 235 (523)
T 1irx_A 175 VYCP----EHRREAEIIEWDGGWKVKYKC----PEGHEGWVDIRSG----------NVKLRWRVDWPMRWSHFGV-DFEP 235 (523)
T ss_dssp EECT----TTCCEECEEEECSSSCEEECC----SSSCCCEECTTSS----------CEEECHHHHHHHHHHHSCC-CBCC
T ss_pred ccch----hhCCcccccccCCCCceeeee----cCCCccccCCcCC----------CCCCCCCcchHhhHHHcCC-CCcC
Confidence 8743 23432 3455655 57888999999 5 4999999998 444 3678
Q ss_pred ccccccCCc----cccc-------------cccccEEEc--ccchhhcchhHHHHHHHH----------HHHHHHHhh-c
Q psy6851 225 CRQDELFPY----TEFK-------------DKYGKVRVH--LSQKQQSLKLVVIMKEFF----------LNVKDHIRN-L 274 (948)
Q Consensus 225 GG~DL~FPH----HEne-------------~h~G~l~i~--geKMSKSLGN~vti~ef~----------l~ls~hyR~-l 274 (948)
+|.|++||| |.++ +|+|+|+++ |+|||||+||++++.+++ .+++.+|++ +
T Consensus 236 ~G~Dh~~~h~s~~~~~~i~~~alG~~~p~~~h~~~i~~~g~g~KmSKs~Gn~i~~~~~~~~~~pdalR~~l~~~~~~~~~ 315 (523)
T 1irx_A 236 AGKDHLVAGSSYDTGKEIIKEVYGKEAPLSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEVLEPGLVRFIYARHRPNKEI 315 (523)
T ss_dssp EEHHHHSTTSHHHHHHHHHHHHHCCCCCBCCEECCEEESCC---------CCCCHHHHHTTSCHHHHHHHHHSSCTTSCE
T ss_pred CCcCccCCCcchhhHHHHHHHHhCCCCCeEEEEEEEEeCCCCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHhcCCCCCc
Confidence 999999999 6653 678899998 899999999999888752 225567777 7
Q ss_pred CCChh-hhH
Q psy6851 275 KFPAT-TVS 282 (948)
Q Consensus 275 ~~s~~-~l~ 282 (948)
+|+.+ .+.
T Consensus 316 ~fs~~~~l~ 324 (523)
T 1irx_A 316 KIDLGLGIL 324 (523)
T ss_dssp EECCSTTHH
T ss_pred eeCcchhHH
Confidence 77766 443
No 26
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=99.68 E-value=4.2e-18 Score=201.21 Aligned_cols=63 Identities=11% Similarity=-0.116 Sum_probs=57.6
Q ss_pred ccccccHHHHHHHHHHHHhhcCCCCCCeeeccccc--HHHHHHHHhCcccCCC-c-----ccCCcccccCCC
Q psy6851 622 SIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEY--IPEIVASAQTPKPAAA-K-----KAESSSDDDSSS 685 (948)
Q Consensus 622 ~~f~~~~~~~~~~f~~dm~~L~v~~p~~~~rvse~--i~~ii~~i~~l~~~g~-Y-----~~~gsvyfdvss 685 (948)
.+...+...+.+.|.+++++|||.. |.++|.|+| ++.|.++|++|.++|+ | +.+|.+|+++++
T Consensus 240 ~~~~~~~~~~~~~f~~~~~~L~I~~-D~~~~es~~~~~~~v~~vi~~L~~kG~~y~~~~ge~~Ga~~v~~~~ 310 (629)
T 2zue_A 240 LYGRKLAEEVVRAQMVTTYKLGVKY-DLLVWESDIVRRKLFEIALELLSKNENFYIPSDGKYRGAFVMDLRK 310 (629)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHTCCC-SEEEEHHHHHHTTHHHHHHHHHHTSTTEECCSSSTTTTCEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcc-ccccCcCccccchhHHHHHHHHHHCCCccccccCCcCCcEEEECcc
Confidence 4556788999999999999999976 999999998 8999999999999999 9 789999998876
No 27
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=99.65 E-value=1.8e-16 Score=187.38 Aligned_cols=247 Identities=11% Similarity=-0.010 Sum_probs=175.0
Q ss_pred hcC-CChHHHHHHHHHHHHHHhc--CCCCCCcccccccc--HHHHHHHHHHHHHHcCCee-----eeCCcEEEeeccCCC
Q psy6851 95 QKK-IPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSEY--IPEIVASYIEKIIANGLAY-----ESNGSVYFNVNAFDS 164 (948)
Q Consensus 95 e~g-~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~--IpeII~~~I~~LI~~G~AY-----es~GsVYFDv~~f~~ 164 (948)
+.| ..|+++...+.+.|.+++. ||.. ++++|.|+| ++.|. ++|++|.++|++| +.+|.+||++..|.+
T Consensus 236 e~gd~~~~~~~~~~~~~f~~~~~~L~I~~-D~~~~es~~~~~~~v~-~vi~~L~~kG~~y~~~~ge~~Ga~~v~~~~~g~ 313 (629)
T 2zue_A 236 ESGELYGRKLAEEVVRAQMVTTYKLGVKY-DLLVWESDIVRRKLFE-IALELLSKNENFYIPSDGKYRGAFVMDLRKLFP 313 (629)
T ss_dssp HHSSSCCHHHHHHHHHHHHHHHHHHTCCC-SEEEEHHHHHHTTHHH-HHHHHHHTSTTEECCSSSTTTTCEEEECTTTCS
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHcCCcc-ccccCcCccccchhHH-HHHHHHHHCCCccccccCCcCCcEEEECcccCC
Confidence 345 7888888888899988887 9965 999999999 88999 7999999999999 889999999999853
Q ss_pred CCCCCcccc-----C------Cccc--cccc--------cccCC-CCcC-CCCCCCcccCCCCCCCCCCcceeEee---c
Q psy6851 165 QPNHYYAKL-----V------PEAY--GDTK--------TLQEG-EVRG-YPPWPARIEGLADETPNRLKYHIFFY---G 218 (948)
Q Consensus 165 ~g~~~YgKL-----~------P~DF--aLWK--------~ak~g-Ep~w-espWg~~~~~m~~~~~GRPGWHIEcL---G 218 (948)
.. + .|.+ + +.|+ .+|| ..++. ++.| .+|||. |||| .+ +
T Consensus 314 ~~-~-~~~~v~~ksdG~~~Y~~~Diay~~~K~~ll~~~fr~~~~~~~~~~~~~wG~----------~~Pg----~~~~~d 377 (629)
T 2zue_A 314 DM-K-NPILVLRRSDGTATYTGKDIAYHLWKFGKIDVDLLYKEWDSTTWTTAPDGK----------SMPN----KFGNAN 377 (629)
T ss_dssp SS-S-CCEEEEECTTSCBCHHHHHHHHHHHHTTCSCCCCEEEECSSSCEEEEEEEE----------ECTT----SSCCCS
T ss_pred cc-c-cCceEEEecCCccccchhhHHHHHHHhhcccccccCCcccccccccCCCCC----------CCCC----ccCCCC
Confidence 11 0 0111 1 3455 6887 55443 3334 478885 7776 22 1
Q ss_pred cC-ccccccccccCCcccc-------------cccc--ccEEEcccchhhcch--hHHHHHHHH----------------
Q psy6851 219 TR-ETGICRQDELFPYTEF-------------KDKY--GKVRVHLSQKQQSLK--LVVIMKEFF---------------- 264 (948)
Q Consensus 219 ~~-dih~GG~DL~FPHHEn-------------e~h~--G~l~i~geKMSKSLG--N~vti~ef~---------------- 264 (948)
.. +++++|+|+-|++..+ ..|. |+|++.|.|||||+| |+|++.+++
T Consensus 378 ~~IyV~g~~q~~~~~~l~~~l~~lG~~~~~~~~~h~~~g~V~~~~~KMSkr~G~~n~v~l~dLl~e~~~~a~~~~~~~~~ 457 (629)
T 2zue_A 378 IVINVIGAEQKHPQLAIKYALQLLGFEDAAANLYHLAYEHVERPEGKFSGRKGTWVGFTVDEVIQEAVKRARELIEEKNP 457 (629)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHTTCHHHHHTEEEEEECCEEBTTBCCCTTTTTTTTCBHHHHHHHHHHHHHHHHHHHCT
T ss_pred cEEEEEeCcHhhHHHHHHHHHHHcCCCCCCCeEEEEEeeeEEcCCCcccCCCCCCCeeeHHHHHHHHHHHHHHHHHhcCc
Confidence 12 5788888888776542 2354 899999999999999 998765543
Q ss_pred ---------------------HHHHHHHhh-cCCChhhhH------------H-------HHhhH---------------
Q psy6851 265 ---------------------LNVKDHIRN-LKFPATTVS------------S-------FEKWT--------------- 288 (948)
Q Consensus 265 ---------------------l~ls~hyR~-l~~s~~~l~------------~-------~~r~~--------------- 288 (948)
..|+.++++ ++|+.+.+. + +++..
T Consensus 458 ~~~~~~~~~~a~~vg~~AvRy~~L~~~~~~~~~Fd~d~~~~~~~~t~~ylqYa~aRi~Silrka~~~~~~~~~~~~~~~~ 537 (629)
T 2zue_A 458 ALSDEEKAEVAEKVGIGAIRYNLIKYSPDKKIIFRWEDVLNFEGESAPYIQYAHARCSSILRKAEEEGIKVDPETLFKNA 537 (629)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHSSCTTSCEECCHHHHSCCSSSSHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHC
T ss_pred ccchhhHHHHHHhcChhHhhHHHHhcCCCCCCeecHHHHHHHhcCchHHHHHHHHHHHHHHHhhhccccccccccccccc
Confidence 225566766 778765321 1 11211
Q ss_pred ------HHhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcCC------CC-----HHHHHHHHHHHHH
Q psy6851 289 ------QADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGT------PN-----QLLLRDIGAYVTK 351 (948)
Q Consensus 289 ------~ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~~------~~-----~~lL~~i~~~V~~ 351 (948)
..+.+|...+..+.+.+..|+ ++++.+.++..|++|++..|++.+.. .. ..++..+...+..
T Consensus 538 ~~~l~~~~e~~L~~~l~~fp~~v~~a~-~~~~p~~l~~yl~~La~~fn~fy~~~~vl~~~~~~~~~RL~L~~a~~~vL~~ 616 (629)
T 2zue_A 538 DFTKLSERERELVIMLSKFPRIVEQAG-KDVKPHLIAWFANELASLFNKFYMDHPVLKAEEGVREARLLLVMAVEQVLKN 616 (629)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHH-HTTCTHHHHHHHHHHHHHHHHHHHHCCSTTSCTTHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHH
Confidence 012234455678889999999 79999999999999999999987632 11 1234556667777
Q ss_pred HHhHccccc
Q psy6851 352 ILTVFGCIG 360 (948)
Q Consensus 352 mL~VLGL~~ 360 (948)
-|.+|||..
T Consensus 617 gL~lLGI~a 625 (629)
T 2zue_A 617 ALYLMGIEA 625 (629)
T ss_dssp HHHHTTCCC
T ss_pred HHHHcCCCc
Confidence 899999864
No 28
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=99.61 E-value=2.6e-16 Score=170.90 Aligned_cols=161 Identities=15% Similarity=0.090 Sum_probs=100.7
Q ss_pred HHHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-ccc---------CCcccccCCCCCccccccCCCCCcc
Q psy6851 631 WEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KKA---------ESSSDDDSSSEDEKPAVKAPAKPVA 700 (948)
Q Consensus 631 ~~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~~---------~gsvyfdvssede~pa~k~~~k~~~ 700 (948)
|++.+++||+.|||.++..+++.|++++.+.+++++|+++|+ |.- .|.+|+.+...
T Consensus 56 ~~~~I~~dL~~LGl~~D~~~~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~~l~~~~~~Y~g~cr~-------------- 121 (298)
T 1nzj_A 56 AAETILRQLEHYGLHWDGDVLWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRV-------------- 121 (298)
T ss_dssp HHHHHHHHHHHTTCCCSSCCEEGGGCHHHHHHHHHHHHHTTCEEEECCCHHHHHHTTSSCCCTTTT--------------
T ss_pred HHHHHHHHHHHcCCCCCCCCeeeeCCHHHHHHHHHHHHHcCCcccCcCCHHHHHHcCCCCCCcccc--------------
Confidence 678889999999999988899999999999999999999999 963 35577776551
Q ss_pred cccchhhhhhcCCCCCCCCCCCCCCcCcCCCCcccccccChhhhhhcCCCCCCCCCCCCCcccccCCCCchhhccCCCCC
Q psy6851 701 HAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDL 780 (948)
Q Consensus 701 ~~~~~~~akk~eSSsd~~ssse~e~~a~~~~~k~~~~a~~~~~~k~~~ssSd~~Sssede~p~~k~~~~~~~~~~~~~~~ 780 (948)
-+ .++++.+.--+.+. ..-..+ .+.. |.+
T Consensus 122 -----------------~~----------~~g~~~~~R~r~~~---~~~~f~-------------------D~~~--G~~ 150 (298)
T 1nzj_A 122 -----------------LH----------HGPDNAAVRIRQQH---PVTQFT-------------------DQLR--GII 150 (298)
T ss_dssp -----------------TC----------CCSTTCEEEECCSS---CCCEEE-------------------ETTT--EEE
T ss_pred -----------------CC----------cCCCCCcEEEecCC---ccccee-------------------hhhC--ccc
Confidence 00 01111110000000 000000 1111 111
Q ss_pred CccccccCCCCCCcceeeccCCCCCcccCCCCCCCCchhHHHHHHHHhhcCCCceeecCCCCCCCCCChhHHHHHh--cc
Q psy6851 781 SSQEASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAE--GL 858 (948)
Q Consensus 781 ~~~~~~~K~~~~DfaLwk~~k~~ep~w~spwg~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FPHH~ne~aq~e--~~ 858 (948)
. ...+.+..||+|||+ .|+|+||++|++ .....|.+.+|| |.||+ +|+.+|.+ .+
T Consensus 151 ~---~~~~~~~~D~VL~R~-------------dG~PtY~la~vv-dD~~~giThvIr--G~D~l----~~t~~q~~l~~a 207 (298)
T 1nzj_A 151 H---ADEKLAREDFIIHRR-------------DGLFAYNLAVVV-DDHFQGVTEIVR--GADLI----EPTVRQISLYQL 207 (298)
T ss_dssp E---CCHHHHHSCCEEECT-------------TSCBCHHHHHHH-HHHHTTCCEEEE--EGGGH----HHHHHHHHHHHH
T ss_pred c---cCcccCCCCEEEECC-------------CCCEeeeeeeee-EHHhcCCCEEEe--Ccccc----ccHHHHHHHHHH
Confidence 1 123456789999995 689999999999 888999999999 99985 99999998 44
Q ss_pred CCCC------------CCCccccchhhhH-hhhH
Q psy6851 859 PTHD------------QEGKELSKGLAKK-LKKL 879 (948)
Q Consensus 859 ~~~~------------~~g~kmsKsl~n~-l~~~ 879 (948)
.|.+ .+|+||||+.||+ |..+
T Consensus 208 lG~~~p~~~H~pll~~~~g~KLSKR~g~~~v~~~ 241 (298)
T 1nzj_A 208 FGWKVPDYIHLPLALNPQGAKLSKQNHAPALPKG 241 (298)
T ss_dssp HTCCCCEEEEECBCCC-------------CCCSS
T ss_pred cCCCCCeEEEeeeeECCCCCcccccCCccChhcC
Confidence 4433 6899999999999 6666
No 29
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=99.61 E-value=1.4e-16 Score=183.47 Aligned_cols=200 Identities=14% Similarity=0.070 Sum_probs=121.5
Q ss_pred HHHHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cccCCcccccCCCCCccccccCCCCCcccccchhhh
Q psy6851 630 HWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAA 708 (948)
Q Consensus 630 ~~~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvssede~pa~k~~~k~~~~~~~~~~a 708 (948)
.|++.+++||+.||+.++...++.|++++.+.+++++|+++|+ |. +|++..|=+.-.. ...+
T Consensus 51 ~~~~~i~~dL~wLGl~wde~~~~QS~r~~~y~~~~~~Li~~G~AY~-----c~ct~~el~~~r~------------~~~~ 113 (492)
T 2cfo_A 51 EYTENILEGLQWLGLTWDEGPYFQSDRLDLYRQAIQTLLDKGLAYY-----CYCTPEELEALRA------------EQKA 113 (492)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEEGGGCHHHHHHHHHHHHHTTSEEE-----ECCCHHHHHHHHH------------HHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCCccccCCHHHHHHHHHHHHHCCCceE-----ecCCHHHHHHHHH------------HHHh
Confidence 5889999999999999888899999999999999999999999 95 5665542000000 0000
Q ss_pred hhcCCCCCCCCCCCCCCcCcCCCCcccccccChhhhhhcCCCCCCCCCCCCCcccc--cCCCC-chhhcc-CCCCCCccc
Q psy6851 709 KKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAV--KAPAK-PVAQAA-KPGDLSSQE 784 (948)
Q Consensus 709 kk~eSSsd~~ssse~e~~a~~~~~k~~~~a~~~~~~k~~~ssSd~~Sssede~p~~--k~~~~-~~~~~~-~~~~~~~~~ 784 (948)
.+. ....++ .|..++..... .+... . ..+.- +.+.. .....+ -.|.+
T Consensus 114 ~g~--~~~y~~----------~cr~ls~~e~~---~~~~~---g-------~~~~iR~k~~~~~~~~~~D~v~G~~---- 164 (492)
T 2cfo_A 114 KGQ--APRYDN----------RHRHLTPEEQA---AFEAA---G-------RTPVIRFKIEDDRQIEWQDLVRGRV---- 164 (492)
T ss_dssp HTC--CSSCCC----------TTTTCCHHHHH---HHHHT---T-------CCCEEEECCCTTCEEEEEETTTEEE----
T ss_pred cCC--CCCCCc----------ccccCCHHHHH---HHHhC---C-------CCceEEEEcCCCCceEEEecceeee----
Confidence 000 000110 12222211000 00000 0 00000 00000 000000 01111
Q ss_pred cccCCCC-CCcceeeccCCCCCcccCCCCCCCCchhHHHHHHHHhhcCCCceeecCCCCCCCC---CChhHHHHHh--cc
Q psy6851 785 ASEKRSP-NDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFP---HHDNELAQAE--GL 858 (948)
Q Consensus 785 ~~~K~~~-~DfaLwk~~k~~ep~w~spwg~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FP---HH~ne~aq~e--~~ 858 (948)
...+.+. .||+|||+.+ || |.|+|+||++|+ +|.|.+||+++++ ||+|...|.. .+
T Consensus 165 ~~~~~~~~~D~Vl~R~d~-------~p-~~G~PtY~la~v----------vDD~~~gIthviRG~D~~~~t~~q~~l~~a 226 (492)
T 2cfo_A 165 SWQGADLGGDMVIARAAP-------RG-EIGYPLYNLVVV----------VDDIAMGITDVIRGEDHIGNTPKQILLYEA 226 (492)
T ss_dssp EEEGGGGCSSEEEECSCC-------TT-SCCCBCHHHHHH----------HHHHHTTCSEEEEEGGGTTHHHHHHHHHHH
T ss_pred eecccccCCCeEEEEecC-------CC-CCCceeehhhhh----------hhhhcCCCCeEEEchhhhhCHHHHHHHHHH
Confidence 2346677 8999999864 56 799999999999 9999999999999 9999999996 33
Q ss_pred CCCC------------CCCccccchhhhH-hhhHHHH--HHHHHHHHHHH
Q psy6851 859 PTHD------------QEGKELSKGLAKK-LKKLQLT--QEKKYNEYIAS 893 (948)
Q Consensus 859 ~~~~------------~~g~kmsKsl~n~-l~~~~~~--~~~~~~~~~~~ 893 (948)
.|.+ .+|+||||+.||+ |..|+.. .-..+.+|+..
T Consensus 227 lg~~~P~~~H~plil~~~g~KLSKr~g~~~l~~~r~~G~~peal~~~l~~ 276 (492)
T 2cfo_A 227 LGATPPNFAHTPLILNSTGQKLSKRDGVTSISDFRAMGYLAPALANYMTL 276 (492)
T ss_dssp TTCCCCEEEEECCEECSSSSBCCTTSSCCBHHHHHHTTCCHHHHHHHHHH
T ss_pred cCCCCceEEEeeeEECCCCCEecccCCcccHHHHHHCCCCHHHHHHHHHH
Confidence 3332 6899999999999 5665421 12346666664
No 30
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=99.61 E-value=1.3e-15 Score=176.32 Aligned_cols=237 Identities=16% Similarity=0.129 Sum_probs=140.5
Q ss_pred HhcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccc--cHHHHHHHHHHHHHHcCCeeeeCCcEEEeeccCCCCCCCC
Q psy6851 94 AQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSE--YIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPNHY 169 (948)
Q Consensus 94 ~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe--~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~f~~~g~~~ 169 (948)
.+.|+++.++++++.+.|.++++ ||.. +.+.|.|+ |++.|+ +++++|+++|++|+.++.|||++....-++...
T Consensus 83 ~~~g~~~~~~~~~~~~~~~~~l~~lgi~~-d~~~~t~~~~~~~~v~-~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~ 160 (536)
T 4dlp_A 83 RKEGITPRDLADRNTSAFRRMAEVLNSSN-DDYIRTSEERHYKASQ-AIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEE 160 (536)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHHHHTTCCC-SEEEETTSHHHHHHHH-HHHHHHHHTTCEEEEEEEEEEETTTTEEECGGG
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHcCCCC-CcceeCCCHHHHHHHH-HHHHHHHHCCCEEEeceeeeecCCcCcccCHHH
Confidence 34467777777777888887777 9975 57788887 999999 799999999999999999999986543111100
Q ss_pred -----cccc---C--C-------------ccccc----ccc------------------ccCCCCcC-----CCCCCCcc
Q psy6851 170 -----YAKL---V--P-------------EAYGD----TKT------------------LQEGEVRG-----YPPWPARI 199 (948)
Q Consensus 170 -----YgKL---~--P-------------~DFaL----WK~------------------ak~gEp~w-----espWg~~~ 199 (948)
.|+. . | .+|.. |-. .+.|-..| ...||-|+
T Consensus 161 ~~~~~~g~~c~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~i~P~~~~~~~~~~l~~~l~D~~ISR~~~~WGipi 240 (536)
T 4dlp_A 161 TEVRADGVRYGPQGTPVEWVEEESYFFRLSAYQDKLLDLYENNPGFIMPAERRNEIVSFVKSGLKDLSISRTTFDWGIPV 240 (536)
T ss_dssp CEECTTSCEECTTSSBCEEEEEEEEEECGGGGHHHHHHHHHHCTTSEESHHHHHHHHHHHHTCCCCEECEEC--CCSCBC
T ss_pred hhcCCCCCcccCCCCcceEEeccceEEecHHHHHHHHHHHHhCCCccCcHHHHHHHHHHHhcCCCccCCccCCCcCCeeC
Confidence 0110 0 0 00100 000 00111122 24589888
Q ss_pred cCCCCC--------------CCCCCcceeEeec---cCccccccccccCCccccc---------------cccccEEEcc
Q psy6851 200 EGLADE--------------TPNRLKYHIFFYG---TRETGICRQDELFPYTEFK---------------DKYGKVRVHL 247 (948)
Q Consensus 200 ~~m~~~--------------~~GRPGWHIEcLG---~~dih~GG~DL~FPHHEne---------------~h~G~l~i~g 247 (948)
|+.+.. .-|.|. +-+-+. +.|+|..|.|.++.|.-+. ..+|+|.++|
T Consensus 241 P~~~~~v~yvWfda~~~y~s~~~~~~-~~~~~~~~~p~dv~~~G~D~~~fh~~~~~a~l~a~g~~~~~~v~~hg~v~~~G 319 (536)
T 4dlp_A 241 PGDEKHVMYVWVDALTNYITALGYPD-TTDERWAYWPANAHIIGKDISRFHAVYWPAFLMSAQLPLPKRVFAHGFLFNRG 319 (536)
T ss_dssp TTCTTSEECHHHHHHHHHHHTTTTTC-TTSGGGGGCSCSEEEEEGGGHHHHHTHHHHHHHHTTCCCCSCEEEECCEEC--
T ss_pred CCCCCCceEEeeCCcHHHHHhcCCCC-CchHHHhhCCcceEEeechHHHHHHHHHHHHHHHCCCCCCcEEEeeeeEeeCC
Confidence 643210 112211 000011 2368899999999887652 2458999999
Q ss_pred cchhhcchhHHHHHHH-----------HHHHH-HHHhh-cCCChhhhHH-------------HHhhH-------------
Q psy6851 248 SQKQQSLKLVVIMKEF-----------FLNVK-DHIRN-LKFPATTVSS-------------FEKWT------------- 288 (948)
Q Consensus 248 eKMSKSLGN~vti~ef-----------~l~ls-~hyR~-l~~s~~~l~~-------------~~r~~------------- 288 (948)
+|||||+||+|+..++ |+ ++ ..+.+ ++|+.+.+.. +.|..
T Consensus 320 ~KMSKS~GNvi~p~d~i~~~GaDalR~~l-l~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~~~~~~~p~ 398 (536)
T 4dlp_A 320 EKMSKSVGNVIDPFELVERYGLDQLRYFL-MREVPFGQDGSYSHEAIVNRTNADLANDLGNLAQRSLSMIAKNCEGKVPQ 398 (536)
T ss_dssp ----------CCHHHHHHHHCHHHHHHHH-HHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTBCCC
T ss_pred ceecccCCCCCCHHHHHHHcCcHHHHHHH-HhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Confidence 9999999999987664 33 33 33444 7787654321 11111
Q ss_pred -----HHhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcC
Q psy6851 289 -----QADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRG 335 (948)
Q Consensus 289 -----~ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~ 335 (948)
..+..+...+.++.+.+.++| +++++..|+..|+++++.+|.|++.
T Consensus 399 ~~~~~~~d~~ll~~l~~~~~~v~~a~-~~~~~~~a~~~l~~l~~~~n~Y~~~ 449 (536)
T 4dlp_A 399 PGAFSEADKAILDQADAALETARKAM-DDQALHLALGAIFAVVAEANRYFAG 449 (536)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHHHHh
Confidence 123445567778899999999 7899999999999999999999874
No 31
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=99.58 E-value=7.8e-16 Score=178.29 Aligned_cols=59 Identities=19% Similarity=0.018 Sum_probs=54.1
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCeeecccc--cHHHHHHHHhCcccCCC-cccCCcccccCCCC
Q psy6851 627 LPKHWEAEFHKDMADLNVLPPTVLTRVSE--YIPEIVASAQTPKPAAA-KKAESSSDDDSSSE 686 (948)
Q Consensus 627 ~~~~~~~~f~~dm~~L~v~~p~~~~rvse--~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvsse 686 (948)
++++|.+.|.+||++|||.. +.+.|+++ |++.|.+++++|.++|+ |+.++.+||+++++
T Consensus 92 ~~~~~~~~~~~~l~~lgi~~-d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~ 153 (536)
T 4dlp_A 92 LADRNTSAFRRMAEVLNSSN-DDYIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDE 153 (536)
T ss_dssp HHHHHHHHHHHHHHHTTCCC-SEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHHcCCCC-CcceeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcC
Confidence 46789999999999999986 57889997 99999999999999999 99999999999884
No 32
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.57 E-value=3.7e-16 Score=181.21 Aligned_cols=133 Identities=12% Similarity=0.007 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeeeCCcEEEeecc----CCCCC--C--------
Q psy6851 104 FKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNA----FDSQP--N-------- 167 (948)
Q Consensus 104 ~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~----f~~~g--~-------- 167 (948)
...+.+++.++++ |+.+ +..+|+|+|++.++ +++++||++|+||+ +|.+.. ++.++ +
T Consensus 144 ~~e~~~~I~edL~wLGl~w-d~~~~qSdr~~~y~-~~~~~Li~~G~AY~-----c~cs~eei~~~r~~g~~~~cR~~s~e 216 (553)
T 3aii_A 144 DPEAYDMIPADLEWLGVEW-DETVIQSDRMETYY-EYTEKLIERGGAYV-----CTCRPEEFRELKNRGEACHCRSLGFR 216 (553)
T ss_dssp CTTHHHHHHHHHHHHTCCC-SEEEEGGGGHHHHH-HHHHHHHHTTSEEE-----ECSCHHHHHHHHHTTCCCGGGGCCHH
T ss_pred cHHHHHHHHHHHHHcCCCC-CCCcccccCHHHHH-HHHHHHHHcCCcee-----CCCCHHHHHHHhhcCCCCccccCCHH
Confidence 3356777887777 9977 68999999999999 79999999999995 443332 21111 0
Q ss_pred ------------C------------CccccCCccccccccccCCCCcCCCCCCCcccCCCCCCCCCCcceeEeeccCccc
Q psy6851 168 ------------H------------YYAKLVPEAYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIFFYGTRETG 223 (948)
Q Consensus 168 ------------~------------~YgKL~P~DFaLWK~ak~gEp~wespWg~~~~~m~~~~~GRPGWHIEcLG~~dih 223 (948)
. ...+.++.||++|+...+++|. ||..| .|+|+||++|- -|.|
T Consensus 217 e~l~~f~~m~~G~~g~~~lR~k~d~~~~n~~~~Dfvl~R~~~~~hp~----~Gd~~-------~g~PtYhfa~~--vDD~ 283 (553)
T 3aii_A 217 ENLQRWREMFEMKEGSAVVRVKTDLNHPNPAIRDWVSMRIVEAEHPR----TGTRY-------RVYPMMNFSVA--VDDH 283 (553)
T ss_dssp HHHHHHHHGGGSCTTSCEEEECCCTTCSSGGGTTCEEEEECCSCBTT----TBTSC-------CEEECHHHHHH--HHHH
T ss_pred HHHHHHHHHhcCCcCceEEEEEcccccCCCCCCCcEEEEecCCCCCc----cCCCc-------eeeeeeeeeee--eeec
Confidence 0 0112246899999988777765 66433 28999999981 2788
Q ss_pred cccccccCC---ccccc-----------------cccccEEEcccchhhcchh
Q psy6851 224 ICRQDELFP---YTEFK-----------------DKYGKVRVHLSQKQQSLKL 256 (948)
Q Consensus 224 ~GG~DL~FP---HHEne-----------------~h~G~l~i~geKMSKSLGN 256 (948)
++|++++|+ ||+|+ .|+|+|+++|+|||||+||
T Consensus 284 ~~GIThviRG~D~~~nt~~Q~~l~~alG~~~P~y~H~~~L~~~g~KLSKR~~~ 336 (553)
T 3aii_A 284 LLGVTHVLRGKDHLANREKQEYLYRHLGWEPPEFIHYGRLKMDDVALSTSGAR 336 (553)
T ss_dssp HTTCCEEEC-----CHHHHHHHHHHHHTCCCCEEECCCCBC-------CHHHH
T ss_pred cCCCceEeccHhhhhCHHHHHHHHHHcCCCCCeEEEeeEEecCCceechhhhh
Confidence 999999999 99874 5788899999999999998
No 33
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=99.56 E-value=1.7e-14 Score=168.05 Aligned_cols=111 Identities=14% Similarity=0.147 Sum_probs=82.8
Q ss_pred cccccccccCCccccc---------------cccccEEEcccchhhcchhHHHHHHH-----------HHHHHH-HHh--
Q psy6851 222 TGICRQDELFPYTEFK---------------DKYGKVRVHLSQKQQSLKLVVIMKEF-----------FLNVKD-HIR-- 272 (948)
Q Consensus 222 ih~GG~DL~FPHHEne---------------~h~G~l~i~geKMSKSLGN~vti~ef-----------~l~ls~-hyR-- 272 (948)
+|..|.|++|+|+-+. ..+|+|.++|+|||||+||+|+..++ |+ ++. ...
T Consensus 303 ~~~~G~D~~~fh~~~~~a~l~~~g~~~p~~v~~hg~v~~~G~KMSKS~GNvv~p~d~i~~~GaDalR~~l-l~~~~~~~~ 381 (560)
T 3h99_A 303 YHFIGKDIVYFLSLFWPAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNHFDADSLRYYY-TAKLSSRID 381 (560)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHHTTBCCCSEEEEECCEEETTEECCTTTTCCCBHHHHHHHSCHHHHHHHH-HHHCCSSCC
T ss_pred EEEeccccchhHHHHHHHHHHhCCCCCCcEEEEEeEEEeCCeeccccCCCcCCHHHHHHHcCcHHHHHHH-HHhCCCCCC
Confidence 7889999999998754 23689999999999999999987764 33 332 222
Q ss_pred hcCCChhhhH-------------HHHhhHH--------------HhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Q psy6851 273 NLKFPATTVS-------------SFEKWTQ--------------ADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDC 325 (948)
Q Consensus 273 ~l~~s~~~l~-------------~~~r~~~--------------ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeL 325 (948)
.++|+.+.+. .+.|... .+..+...+..+...+.++| +++++..|+..|++|
T Consensus 382 d~~f~~~~~~~~~~~~l~~~l~n~~~R~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-e~~~~~~a~~~l~~l 460 (560)
T 3h99_A 382 DIDLNLEDFVQRVNADIVNKVVNLASRNAGFINKRFDGVLASELADPQLYKTFTDAAEVIGEAW-ESREFGKAVREIMAL 460 (560)
T ss_dssp CEEECHHHHHHHHHHHCCCCCTHHHHTTHHHHHHHSTTBCCSSCSCHHHHHHHHHTHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHH
Confidence 2667765431 1122111 13445667788899999999 799999999999999
Q ss_pred HHHHHhhhc
Q psy6851 326 ISQVNIYLR 334 (948)
Q Consensus 326 VraiN~yLd 334 (948)
++.+|.|++
T Consensus 461 ~~~~n~Yi~ 469 (560)
T 3h99_A 461 ADLANRYVD 469 (560)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999976
No 34
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=99.54 E-value=1.2e-14 Score=169.80 Aligned_cols=240 Identities=14% Similarity=0.104 Sum_probs=152.8
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHhc--CCCCCCcccccc--ccHHHHHHHHHHHHHHcCCeeeeCCcEEEeeccCCCCCC
Q psy6851 92 KEAQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVS--EYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPN 167 (948)
Q Consensus 92 ~a~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvT--e~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~f~~~g~ 167 (948)
+|.+.|++++++++++.+.|.++++ ||. ++.+.|.| +|+..|. +++++|.++|++|+..+.|||++..-.-+..
T Consensus 82 ~a~~~g~~p~~~~~~~~~~~~~~~~~lgi~-~D~~~~t~~~~~~~~v~-~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~ 159 (564)
T 3kfl_A 82 AAAKQGVSPMDFTTSVSSEFKQCFQEMNYD-MNYFIRTTNPTHEKLVQ-DIWKKLAAKGDIYLGKYEGWYSVSDESFLTA 159 (564)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHTTCC-CSEEEETTSHHHHHHHH-HHHHHHHHHTCEEEEEEEEEEETTTTEEECG
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHcCCC-CCccccCCCHHHHHHHH-HHHHHHHHCCCEEEeeeeEEecCCcCCCCCH
Confidence 3445677777888888888887777 996 45688888 5999999 7999999999999999999999754211100
Q ss_pred C-------CccccC----C-----------------ccccc----cccc------------------cCCCCcC------
Q psy6851 168 H-------YYAKLV----P-----------------EAYGD----TKTL------------------QEGEVRG------ 191 (948)
Q Consensus 168 ~-------~YgKL~----P-----------------~DFaL----WK~a------------------k~gEp~w------ 191 (948)
. .+|+.. | ..|.. |-.. +.|-..|
T Consensus 160 ~~~~~~~~~~g~~c~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~i~P~~~~~~~~~wl~~gl~D~~ISR~~ 239 (564)
T 3kfl_A 160 QNVADGVDRDGKPCKVSLESGHVVTWVEEENYMFRLSAFRERLLKYFHDHPNCIVPEFRRREVIKTVEKGLFDLSISRKR 239 (564)
T ss_dssp GGEEEEECTTSCEEEEETTTSCBCEEEEEEEEEECGGGGHHHHHHHHHHCTTSEESHHHHHHHHHHHHHCCCCEECEEEG
T ss_pred HHhccCcCCCCCEeccccCCCCccEEEecceeEEEHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCCCccccCcC
Confidence 0 011100 0 00100 0000 0111122
Q ss_pred --CCCCCCcccCCCCC--------CCC---CCcceeEe---------e--c---cCccccccccccCCccccc-------
Q psy6851 192 --YPPWPARIEGLADE--------TPN---RLKYHIFF---------Y--G---TRETGICRQDELFPYTEFK------- 237 (948)
Q Consensus 192 --espWg~~~~~m~~~--------~~G---RPGWHIEc---------L--G---~~dih~GG~DL~FPHHEne------- 237 (948)
...||-|+|+.+.. ..| --|||-+. + . +.|+|..|.|.++.|.-..
T Consensus 240 ~~~~~WGipiP~~~~~v~yVWfDa~~~y~s~~~~~~~~~~~~~~~~~~~~~~~wp~dv~~~GkDii~FH~~~wpa~L~a~ 319 (564)
T 3kfl_A 240 ESVMNWSIPVPGDERHCIYVWLDALFNYYTGALTRVATDGTETLDEDHHALNRWPADVHVVGKDILKFHAIYWPAFLMSA 319 (564)
T ss_dssp GGGTTCSCEETTEEEEEECHHHHHHTHHHHHHHEEECTTSCEEECSSSTTTTCCSCSEEEEEGGGHHHHHTHHHHHHHHT
T ss_pred CCCCCCCeecCCCCCCEEEEeccCcHHHHHHhCccccccccccchhcchhhhcCccceEEEeecccchHHHHHHHHHHhC
Confidence 34688777542100 000 01121110 0 0 1268888999998665432
Q ss_pred --------cccccEEEcccchhhcchhHHHHHHH-----------HHHHH-HHHhh-cCCChhhhHH-------------
Q psy6851 238 --------DKYGKVRVHLSQKQQSLKLVVIMKEF-----------FLNVK-DHIRN-LKFPATTVSS------------- 283 (948)
Q Consensus 238 --------~h~G~l~i~geKMSKSLGN~vti~ef-----------~l~ls-~hyR~-l~~s~~~l~~------------- 283 (948)
..+|+|.++|+|||||+||+|+..++ |+ ++ ..+.+ ++|+.+.+..
T Consensus 320 g~~~~~~v~~hg~v~~~G~KMSKS~GNvV~p~d~i~~~G~DalR~~l-l~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~ 398 (564)
T 3kfl_A 320 ELPLPERLVSHGWWTKDHKKISKSLGNAFDPVEKAKEFGIDALKYFL-MRESNFQDDGDYSDKNMVARLNGELADTLGNL 398 (564)
T ss_dssp TCCCCSCEEEECCEEETTEECCTTTTCCCCHHHHHHHHCHHHHHHHH-HHHCCSSCCEECCHHHHHHHHHHTTTTTHHHH
T ss_pred CCCCCcEEEEcccEeeCCccccccCCCCCCHHHHHHHcCcHHHHHHH-HHcCCcccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34689999999999999999987664 33 33 34444 7787764421
Q ss_pred HHhh-----------------HHHhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcC
Q psy6851 284 FEKW-----------------TQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRG 335 (948)
Q Consensus 284 ~~r~-----------------~~ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~ 335 (948)
+.|. ...+..+...+..+.+.+.++| +++++..|+..|+++++.+|.|++.
T Consensus 399 ~~R~~~~~~~~~g~~p~~~~~~~~d~~ll~~l~~~~~~v~~a~-e~~~~~~a~~~i~~l~~~~n~Y~~~ 466 (564)
T 3kfl_A 399 VSRCVAPKINVNGMWPEPAEYSESDKTLIASLNNLAGTVDHYY-CLPDIQHALIAIFDVLRSLNAYVTE 466 (564)
T ss_dssp HHHHHCTTTSTTSBCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHHHHHHHh
Confidence 1111 1124455667788899999999 7999999999999999999999864
No 35
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=99.50 E-value=4.5e-14 Score=166.36 Aligned_cols=231 Identities=13% Similarity=0.079 Sum_probs=151.8
Q ss_pred hHHHHHHHHHHHHHHhc--CCCCCCccccccccH-HHHHHHHHHHHHHcCCeeeeCCcEEEeeccCCCCCCCCccccCCc
Q psy6851 100 PSEMFKMETDKYSQFDE--TVLPPTVLTRVSEYI-PEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPNHYYAKLVPE 176 (948)
Q Consensus 100 ~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~I-peII~~~I~~LI~~G~AYes~GsVYFDv~~f~~~g~~~YgKL~P~ 176 (948)
|+.+.....+.|.+++. ||.. +++++.|+|+ +.|. ++|+.|.++|++|+++|.||||+++|.+ ++.
T Consensus 266 w~~~~~~~~~~~~~~~~~L~V~f-D~~~~ES~~~~~~~~-~vi~~L~~kG~~ye~dGa~~~~~~~~g~-------~~d-- 334 (607)
T 1f7u_A 266 WKRFREFSIEKYIDTYARLNIKY-DVYSGESQVSKESML-KAIDLFKEKGLTHEDKGAVLIDLTKFNK-------KLG-- 334 (607)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCC-SEEEEGGGCCHHHHH-HHHHHHHHTTCEEEETTEEEEEGGGTCT-------TTC--
T ss_pred HHHHHHHHHHHHHHHHHHcCCcc-eeecCcchhhhhHHH-HHHHHHHhCCCEEEECCcEEEEecccCC-------CCC--
Confidence 66666777777777776 9966 9999999999 8998 7999999999999999999999998821 111
Q ss_pred cccccccccCCCCcCCCCCCCcccCCCCCCCCCCcceeE-----eeccC-ccccccccccCCcccc------------cc
Q psy6851 177 AYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIF-----FYGTR-ETGICRQDELFPYTEF------------KD 238 (948)
Q Consensus 177 DFaLWK~ak~gEp~wespWg~~~~~m~~~~~GRPGWHIE-----cLG~~-dih~GG~DL~FPHHEn------------e~ 238 (948)
+..+-| +.|.+-+.+. + -+||+. .++.. ++|++|+|+.||++.. ..
T Consensus 335 ~~v~~K--sDG~~~Y~t~-----D---------ia~~~~k~~~~~~d~~IyV~g~~q~~~f~q~~~~~~~lG~~~~~~~~ 398 (607)
T 1f7u_A 335 KAIVQK--SDGTTLYLTR-----D---------VGAAMDRYEKYHFDKMIYVIASQQDLHAAQFFEILKQMGFEWAKDLQ 398 (607)
T ss_dssp EEEEEC--TTSCCCHHHH-----H---------HHHHHHHHHHHCCSEEEEECCGGGHHHHHHHHHHHHHTTCGGGGGEE
T ss_pred ceeEec--cCCCcCCCCC-----c---------HHHHHHHHhhcCCCcEEEEEcChHhhHHHHHHHHHHHcCCCcCcEEE
Confidence 122211 1222211110 0 011211 12222 6899999999998762 13
Q ss_pred ccccEEEcccchhhcchhHHHHHHHHH--------------------------------------HHHHHHhh-cCCChh
Q psy6851 239 KYGKVRVHLSQKQQSLKLVVIMKEFFL--------------------------------------NVKDHIRN-LKFPAT 279 (948)
Q Consensus 239 h~G~l~i~geKMSKSLGN~vti~ef~l--------------------------------------~ls~hyR~-l~~s~~ 279 (948)
|.++..+. ||||++||++++++++- .|+.|||+ +.|+.+
T Consensus 399 Hv~fg~v~--kMSkR~G~~v~L~dLlde~~~~a~~~~~~~~~~~~~~~e~~~~a~~vgi~avry~~Ls~~~~s~~~Fd~d 476 (607)
T 1f7u_A 399 HVNFGMVQ--GMSTRKGTVVFLDNILEETKEKMHEVMKKNENKYAQIEHPEEVADLVGISAVMIQDMQGKRINNYEFKWE 476 (607)
T ss_dssp EECCCCEE--SCCGGGTCCCBHHHHHHHHHHHHHHHHHTCHHHHTTCSCHHHHHHHHHHHHHHHHHHSSCTTCCEECCHH
T ss_pred Eecccccc--cccCCCCCcccHHHHHHHHHHHHHHHHHhCcccccchhhHHHHHHHHHHHHHHHHHhccCCCCCcccCHH
Confidence 44333333 79999999998776542 24557777 788775
Q ss_pred hhH------------HHHhhHH------------------------HhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHH
Q psy6851 280 TVS------------SFEKWTQ------------------------ADLELSTRFIQTKNNVHAALCDNMDTRSALDSIR 323 (948)
Q Consensus 280 ~l~------------~~~r~~~------------------------ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLf 323 (948)
.+. +..|+.. .+..|...+.++++.+..|+ +++..+....-|+
T Consensus 477 ~~~~~~g~t~pylqYa~aRi~SIlrka~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~vv~~a~-~~~~P~~l~~Yl~ 555 (607)
T 1f7u_A 477 RMLSFEGDTGPYLQYAHSRLRSVERNASGITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAI-KTHEPTTVVTYLF 555 (607)
T ss_dssp HHHCCSSSSHHHHHHHHHHHHHHHHHTTTSCHHHHTTSCGGGCCSHHHHHHHHHHTTHHHHHHHHH-HHCCHHHHHHHHH
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHhcCCCcccccccchhhcCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHH
Confidence 432 1112110 11223345567788888888 6899999999999
Q ss_pred HHHHHHHhhhcCC-----C------CHHHHHHHHHHHHHHHhHccccc
Q psy6851 324 DCISQVNIYLRGT-----P------NQLLLRDIGAYVTKILTVFGCIG 360 (948)
Q Consensus 324 eLVraiN~yLd~~-----~------~~~lL~~i~~~V~~mL~VLGL~~ 360 (948)
+|++..|++-+.. . ...++..+...+..-|.+|||..
T Consensus 556 ~La~~fn~fY~~~~Vl~~~~~~~~aRL~L~~a~~~vL~~gL~LLGI~~ 603 (607)
T 1f7u_A 556 KLTHQVSSCYDVLWVAGQTEELATARLALYGAARQVLYNGMRLLGLTP 603 (607)
T ss_dssp HHHHHHHHHHHHCCSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 9999999965432 1 11244455566777799999864
No 36
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=99.49 E-value=1.1e-15 Score=180.05 Aligned_cols=61 Identities=11% Similarity=0.086 Sum_probs=56.6
Q ss_pred ccccHHHHHHHHHHHHhhcCCCCCCeeecccccH-HHHHHHHhCcccCCC-cccCCcccccCCC
Q psy6851 624 FATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYI-PEIVASAQTPKPAAA-KKAESSSDDDSSS 685 (948)
Q Consensus 624 f~~~~~~~~~~f~~dm~~L~v~~p~~~~rvse~i-~~ii~~i~~l~~~g~-Y~~~gsvyfdvss 685 (948)
+..+...+.+.|.+|+++|||.. |.+++.|+|+ +.|.+.|+.|.++|+ |+.+|.+||++++
T Consensus 266 w~~~~~~~~~~~~~~~~~L~V~f-D~~~~ES~~~~~~~~~vi~~L~~kG~~ye~dGa~~~~~~~ 328 (607)
T 1f7u_A 266 WKRFREFSIEKYIDTYARLNIKY-DVYSGESQVSKESMLKAIDLFKEKGLTHEDKGAVLIDLTK 328 (607)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCC-SEEEEGGGCCHHHHHHHHHHHHHTTCEEEETTEEEEEGGG
T ss_pred HHHHHHHHHHHHHHHHHHcCCcc-eeecCcchhhhhHHHHHHHHHHhCCCEEEECCcEEEEecc
Confidence 45678899999999999999987 9999999999 899999999999999 9999999999876
No 37
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=99.49 E-value=7e-15 Score=171.20 Aligned_cols=59 Identities=15% Similarity=0.007 Sum_probs=52.4
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCeeeccc--ccHHHHHHHHhCcccCCC-cccCCcccccCCCC
Q psy6851 627 LPKHWEAEFHKDMADLNVLPPTVLTRVS--EYIPEIVASAQTPKPAAA-KKAESSSDDDSSSE 686 (948)
Q Consensus 627 ~~~~~~~~f~~dm~~L~v~~p~~~~rvs--e~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvsse 686 (948)
++++|.+.|.+||++|||.. +.+.|++ +|...|.+++++|.++|+ |+.++.+||+++.+
T Consensus 85 ~~~~~~~~~~~~~~~lgi~~-d~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~ 146 (560)
T 3h99_A 85 MIGEMSQEHQTDFAGFNISY-DNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKG 146 (560)
T ss_dssp HHHHHHHHHHHHHHHTTCCC-SEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHHcCCCC-CCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccC
Confidence 45689999999999999975 6677777 689999999999999999 99999999999884
No 38
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=99.47 E-value=5.9e-15 Score=171.21 Aligned_cols=141 Identities=9% Similarity=0.034 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeeeCCcE-----EEeeccCCCCCC-C-----
Q psy6851 102 EMFKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSV-----YFNVNAFDSQPN-H----- 168 (948)
Q Consensus 102 el~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes~GsV-----YFDv~~f~~~g~-~----- 168 (948)
-....+.+++.++|+ |+.+++..+|+|+|+++++ +++++||++|+||.-..+. |..+...+.+.+ .
T Consensus 72 R~~~e~~~~I~edL~wLGl~wde~~~~qSer~~~~~-~~a~~Li~~G~AY~c~ct~eel~~~r~~~~~~g~~~~~R~~s~ 150 (553)
T 1qtq_A 72 KEDIEYVESIKNDVEWLGFHWSGNVRYSSDYFDQLH-AYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSV 150 (553)
T ss_dssp GCCHHHHHHHHHHHHHTTCCCSSSCEEGGGGHHHHH-HHHHHHHHTTSEEEECCCHHHHHHHHCCSSSCCCCCTTTTCCH
T ss_pred hcCHHHHHHHHHHHHHcCCCCCCCCeehcccHHHHH-HHHHHHHHCCCceecCCCHHHHHHHhcccccCCCCCccccCch
Confidence 345567888888888 9999999999999999999 7999999999999632111 111111222211 0
Q ss_pred ----------------------------CccccCCccccccccccCCCCcCCCCCCCcccCCCCCCCCCCcceeEeeccC
Q psy6851 169 ----------------------------YYAKLVPEAYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIFFYGTR 220 (948)
Q Consensus 169 ----------------------------~YgKL~P~DFaLWK~ak~gEp~wespWg~~~~~m~~~~~GRPGWHIEcLG~~ 220 (948)
.-.+.++.||++||...++++.|.++|. |+|+||+.| .
T Consensus 151 ee~~~~fe~m~~G~~~~g~~~lR~kid~~~~~~~~~D~Vl~R~~~~~h~~~~d~w~-----------g~PtY~la~---v 216 (553)
T 1qtq_A 151 EENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWC-----------IYPMYDFTH---C 216 (553)
T ss_dssp HHHHHHHHHHHTTCSCTTSCEEEECSCTTCSSGGGSSCEEEEECCCCBTTTBTSCS-----------EEECHHHHH---H
T ss_pred hhhHhHHHHHhCCCccCCceEEEEecccccCCCCCCCcEEEEecCCCCCccCCCCc-----------ccccccccc---E
Confidence 0112345799999999888888888884 899999754 3
Q ss_pred -ccccccccccC---Cccccc---------------c---ccccEEEcccchhhcchhH
Q psy6851 221 -ETGICRQDELF---PYTEFK---------------D---KYGKVRVHLSQKQQSLKLV 257 (948)
Q Consensus 221 -dih~GG~DL~F---PHHEne---------------~---h~G~l~i~geKMSKSLGN~ 257 (948)
|.|++|++++| |||+|. . |+|||.++|+|||||.||.
T Consensus 217 vDDh~~GITHviRg~e~~~n~~~q~~l~~alg~~~~P~~~~f~hLn~~g~KLSKR~~~~ 275 (553)
T 1qtq_A 217 ISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRLNLEYTVMSKRKLNL 275 (553)
T ss_dssp HHHHHTTCSEEEEEGGGTTTHHHHHHHHHTSCCSCCCEEEEECCCCBTTSCCCHHHHHH
T ss_pred EEeccCCcceEeeccchhhhHHHHHHHHHHcCCCCCCCeEEEEeecCCCcccccccccc
Confidence 88999999999 999973 1 6888999999999999994
No 39
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=99.44 E-value=1.6e-14 Score=173.86 Aligned_cols=139 Identities=12% Similarity=0.076 Sum_probs=104.0
Q ss_pred HHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeeeCCcE-----EEeeccCCCCCC----------
Q psy6851 105 KMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSV-----YFNVNAFDSQPN---------- 167 (948)
Q Consensus 105 ~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes~GsV-----YFDv~~f~~~g~---------- 167 (948)
..+.+++.++|+ |+.+++..+|+|+|++.++ +++++||++|+||.-..+. |..+..++.+..
T Consensus 115 ~e~~~~IledL~wLGl~wde~~~~qSer~d~y~-e~a~~LI~~G~AY~c~ct~eel~~~r~~~~~~G~~s~~R~ls~ee~ 193 (851)
T 2hz7_A 115 QEYVDSIADDLKWLGLDWGEHFYYASDYFDRYY-AYAEQLIRQGDAYVESVSPEELSRLRGNATTPGTPSPYRDRSVEEN 193 (851)
T ss_dssp HHHHHHHHHHHHHHTCCCTTCEEEGGGGHHHHH-HHHHHHHHTTSEEEECSCHHHHHHHHCBTTBCCCCCTTTTCCHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCcccHhhhHHHHH-HHHHHHHHCCCcEeecCCHHHHHHHhcchhccCCCcccccCCHHHH
Confidence 346777888877 9999999999999999999 7999999999999632111 111111111100
Q ss_pred ----------C--------------CccccCCccccccccccCCCCcCCCCCCCcccCCCCCCCCCCcceeEeeccCccc
Q psy6851 168 ----------H--------------YYAKLVPEAYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIFFYGTRETG 223 (948)
Q Consensus 168 ----------~--------------~YgKL~P~DFaLWK~ak~gEp~wespWg~~~~~m~~~~~GRPGWHIEcLG~~dih 223 (948)
. ...+.++.||++||...++++.|.++|. |+|+||++|- -|.|
T Consensus 194 l~~fe~m~~G~~~~g~~vlR~Kid~~~~~~~~~DfVl~R~~~~~h~~~gd~w~-----------g~PtYhfA~v--VDD~ 260 (851)
T 2hz7_A 194 LDLLRRMKAGEFADGEHVLRAKIDLTAPNMKLRDPVLYRIVNKPHFRTSDEWH-----------IYPAYDFEHP--LQDA 260 (851)
T ss_dssp HHHHHHHHTTCSCTTSCEEEECCCTTCSSGGGSSCEEEEECCCCBTTTBTSCS-----------EEECHHHHHH--HHHH
T ss_pred hhHHHHHhcCCcccCCeeEEEeccccccCCCCCCcEEEEecCCCCCccCCCCc-----------cccccceeeE--eeec
Confidence 0 0122345799999999888888888884 8999999982 2678
Q ss_pred cccccccCC---ccccc-------------c-----ccccEEEcccchhhcchhH
Q psy6851 224 ICRQDELFP---YTEFK-------------D-----KYGKVRVHLSQKQQSLKLV 257 (948)
Q Consensus 224 ~GG~DL~FP---HHEne-------------~-----h~G~l~i~geKMSKSLGN~ 257 (948)
.+|++++++ ||+|. . |+|||.++|+|||||.||.
T Consensus 261 ~~GITHViRG~D~~~n~~~q~~l~~alG~~~~P~~~~fahLn~~g~KLSKR~g~~ 315 (851)
T 2hz7_A 261 IEGVTHSMCSLEFVDNRAIYDWLMEKLNFDPRPHQYEFGRRGLEYTITSKRKLRE 315 (851)
T ss_dssp HHTCSEEEEEGGGTTTHHHHHHHHHHTTCSSCCEEEEECCEEETTCCCCHHHHHH
T ss_pred cCCcceeecchhhhhChHHHHHHHHHcCCCCCCCceEEEEecCCCcccccccccc
Confidence 888888888 87762 1 6899999999999999984
No 40
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=99.41 E-value=7.5e-14 Score=163.02 Aligned_cols=59 Identities=10% Similarity=0.008 Sum_probs=53.9
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCeeeccc--ccHHHHHHHHhCcccCCC-cccCCcccccCCCC
Q psy6851 627 LPKHWEAEFHKDMADLNVLPPTVLTRVS--EYIPEIVASAQTPKPAAA-KKAESSSDDDSSSE 686 (948)
Q Consensus 627 ~~~~~~~~f~~dm~~L~v~~p~~~~rvs--e~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvsse 686 (948)
++++|.+.|.+||++|||.. +.+.|++ +|+..|.+++++|.++|+ |+..+.+||+++++
T Consensus 93 ~~~~~~~~~~~~~~~lgi~~-D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~ 154 (564)
T 3kfl_A 93 FTTSVSSEFKQCFQEMNYDM-NYFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDE 154 (564)
T ss_dssp HHHHHHHHHHHHHHHTTCCC-SEEEETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHHcCCCC-CccccCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEEecCCcC
Confidence 46789999999999999985 6788998 599999999999999999 99999999999884
No 41
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=99.29 E-value=2.6e-12 Score=155.69 Aligned_cols=114 Identities=15% Similarity=0.165 Sum_probs=89.7
Q ss_pred ccccccccccCCccccc-----------------cccccEEEcccchhhcchhHHHHHHH-----------HHHHHHHHh
Q psy6851 221 ETGICRQDELFPYTEFK-----------------DKYGKVRVHLSQKQQSLKLVVIMKEF-----------FLNVKDHIR 272 (948)
Q Consensus 221 dih~GG~DL~FPHHEne-----------------~h~G~l~i~geKMSKSLGN~vti~ef-----------~l~ls~hyR 272 (948)
|+|+||.|++||||.|+ +|+|+|.++|+|||||+||+|+..++ |++.+.+|+
T Consensus 605 Di~~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~~G~KMSKS~GNvv~p~dli~~yGaDalR~~ll~~~~~~ 684 (810)
T 1wkb_A 605 DWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHD 684 (810)
T ss_dssp SEEEEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEETTBCCCTTTTCCCBHHHHHHHHCHHHHHHHHHHHCCTT
T ss_pred eEEeecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEeCCeehhhcCCCcCCHHHHHHHcChHHHHHHHHhcCCCC
Confidence 79999999999998864 46799999999999999999987754 443478898
Q ss_pred h-cCCChhhhHH----HHhhHH------------------HhHHHhHHHHHHHHHHHHHHhhcCChHHHHHH-HHHHHHH
Q psy6851 273 N-LKFPATTVSS----FEKWTQ------------------ADLELSTRFIQTKNNVHAALCDNMDTRSALDS-IRDCISQ 328 (948)
Q Consensus 273 ~-l~~s~~~l~~----~~r~~~------------------ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaa-LfeLVra 328 (948)
+ ++|+.+.+.. +.|+.. .+..+...+..+...|.++| |+|+++.|+.. ++.+++.
T Consensus 685 ~d~~fs~~~~~~~~~~l~rl~n~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-~~~~~~~a~~~~~~~l~~~ 763 (810)
T 1wkb_A 685 SDFDWRRKEVGKLRKQIERFYELISQFAEYEVKGNVELKDIDRWMLHRLNKAIKETTNAL-EEFRTRTAVQWAFYSIMND 763 (810)
T ss_dssp CCEEECHHHHHHHHHHHHHHHHHHHHHHTCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHTHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHhccCcccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHH
Confidence 8 9999887652 222221 12234455677889999999 99999999985 5799999
Q ss_pred HHhhhcC
Q psy6851 329 VNIYLRG 335 (948)
Q Consensus 329 iN~yLd~ 335 (948)
+|.|++.
T Consensus 764 ~n~yi~~ 770 (810)
T 1wkb_A 764 LRWYLRR 770 (810)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999874
No 42
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=99.29 E-value=9.2e-12 Score=153.72 Aligned_cols=114 Identities=15% Similarity=0.160 Sum_probs=89.3
Q ss_pred ccccccccccCCccccc-----------------cccccEEEcccchhhcchhHHHHHHH-----------HHHHHHHHh
Q psy6851 221 ETGICRQDELFPYTEFK-----------------DKYGKVRVHLSQKQQSLKLVVIMKEF-----------FLNVKDHIR 272 (948)
Q Consensus 221 dih~GG~DL~FPHHEne-----------------~h~G~l~i~geKMSKSLGN~vti~ef-----------~l~ls~hyR 272 (948)
|+|+||.|++||||.++ +|+|+|.++|+|||||+||+|+..++ |++.+++|+
T Consensus 605 Di~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~~G~KMSKS~GNvv~p~d~i~~yGaDalR~~ll~~~~~~ 684 (967)
T 1wz2_A 605 DWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHD 684 (967)
T ss_dssp SEEEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEESSSCCCTTTCCCCBHHHHHHTTCHHHHHHHHHHHCCTT
T ss_pred eEEeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEeeCCEEccccccCCCCHHHHHHHhChHHHHHHHHhCCCCC
Confidence 78999999999998864 46789999999999999999987753 454478898
Q ss_pred h-cCCChhhhHH----HHhhHH------------------HhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHH-HHHHHH
Q psy6851 273 N-LKFPATTVSS----FEKWTQ------------------ADLELSTRFIQTKNNVHAALCDNMDTRSALDSI-RDCISQ 328 (948)
Q Consensus 273 ~-l~~s~~~l~~----~~r~~~------------------ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaL-feLVra 328 (948)
+ ++|+.+.+.. +.|+.. .+..+...+..+...|.++| |+|+++.|+.++ +.+++.
T Consensus 685 ~d~~fs~~~~~~~~~~l~rl~n~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~~~-e~~~f~~A~~~~~~~l~~~ 763 (967)
T 1wz2_A 685 SDFDWRRKEVGKLRKQIERFYELISQFAEYEVKGNVELKDIDRWMLHRLNKAIKETTNAL-EEFRTRTAVQWAFYSIMND 763 (967)
T ss_dssp CCEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHTHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHH
Confidence 8 9999887652 222221 12233445677889999999 999999999865 799999
Q ss_pred HHhhhcC
Q psy6851 329 VNIYLRG 335 (948)
Q Consensus 329 iN~yLd~ 335 (948)
+|.|++.
T Consensus 764 ~n~Yi~~ 770 (967)
T 1wz2_A 764 LRWYLRR 770 (967)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999874
No 43
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=99.12 E-value=1.2e-11 Score=134.48 Aligned_cols=119 Identities=10% Similarity=-0.028 Sum_probs=74.3
Q ss_pred HHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeee---------CCcEEEeeccC-CCCCCCCccccC
Q psy6851 107 ETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYES---------NGSVYFNVNAF-DSQPNHYYAKLV 174 (948)
Q Consensus 107 ~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes---------~GsVYFDv~~f-~~~g~~~YgKL~ 174 (948)
+++.+.++++ ||.++...++.|++++.+. ++|++|+++|+||.- .|.|||.+-++ +. ||++.
T Consensus 56 ~~~~I~~dL~~LGl~~D~~~~~qSer~~~y~-~~~~~L~~~G~aY~c~ct~~~l~~~~~~Y~g~cr~~~~-----~g~~~ 129 (298)
T 1nzj_A 56 AAETILRQLEHYGLHWDGDVLWQSQRHDAYR-EALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHH-----GPDNA 129 (298)
T ss_dssp HHHHHHHHHHHTTCCCSSCCEEGGGCHHHHH-HHHHHHHHTTCEEEECCCHHHHHHTTSSCCCTTTTTCC-----CSTTC
T ss_pred HHHHHHHHHHHcCCCCCCCCeeeeCCHHHHH-HHHHHHHHcCCcccCcCCHHHHHHcCCCCCCccccCCc-----CCCCC
Confidence 4556666666 9998888999999999999 799999999999973 56799988776 32 33321
Q ss_pred ----------------------------CccccccccccCCCCcCCCCCCCcccCCCCCCCCCCcceeEe------eccC
Q psy6851 175 ----------------------------PEAYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIFF------YGTR 220 (948)
Q Consensus 175 ----------------------------P~DFaLWK~ak~gEp~wespWg~~~~~m~~~~~GRPGWHIEc------LG~~ 220 (948)
+.||++|| ..|+|+||++| .|-+
T Consensus 130 ~~R~r~~~~~~~f~D~~~G~~~~~~~~~~~D~VL~R-----------------------~dG~PtY~la~vvdD~~~giT 186 (298)
T 1nzj_A 130 AVRIRQQHPVTQFTDQLRGIIHADEKLAREDFIIHR-----------------------RDGLFAYNLAVVVDDHFQGVT 186 (298)
T ss_dssp EEEECCSSCCCEEEETTTEEEECCHHHHHSCCEEEC-----------------------TTSCBCHHHHHHHHHHHTTCC
T ss_pred cEEEecCCcccceehhhCcccccCcccCCCCEEEEC-----------------------CCCCEeeeeeeeeEHHhcCCC
Confidence 23344433 24999999998 5655
Q ss_pred -ccccccccccCCccc--------------cccccccE-EEcccchhhcchhH
Q psy6851 221 -ETGICRQDELFPYTE--------------FKDKYGKV-RVHLSQKQQSLKLV 257 (948)
Q Consensus 221 -dih~GG~DL~FPHHE--------------ne~h~G~l-~i~geKMSKSLGN~ 257 (948)
.|+ |.||+ ++.. ...|.+.| ..+|+||||+.||+
T Consensus 187 hvIr--G~D~l-~~t~~q~~l~~alG~~~p~~~H~pll~~~~g~KLSKR~g~~ 236 (298)
T 1nzj_A 187 EIVR--GADLI-EPTVRQISLYQLFGWKVPDYIHLPLALNPQGAKLSKQNHAP 236 (298)
T ss_dssp EEEE--EGGGH-HHHHHHHHHHHHHTCCCCEEEEECBCCC-------------
T ss_pred EEEe--Ccccc-ccHHHHHHHHHHcCCCCCeEEEeeeeECCCCCcccccCCcc
Confidence 566 78885 2211 11566665 78999999999997
No 44
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=99.09 E-value=2.4e-11 Score=140.10 Aligned_cols=130 Identities=8% Similarity=-0.008 Sum_probs=92.4
Q ss_pred HHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeeeCCcEEEeec-----------------cCCCCCC
Q psy6851 107 ETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVN-----------------AFDSQPN 167 (948)
Q Consensus 107 ~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes~GsVYFDv~-----------------~f~~~g~ 167 (948)
+++.+.++|. |+.++...+|.|++++.+. +++++||++|+||. +|.+. .|++...
T Consensus 52 ~~~~i~~dL~wLGl~wde~~~~QS~r~~~y~-~~~~~Li~~G~AY~-----c~ct~~el~~~r~~~~~~g~~~~y~~~cr 125 (492)
T 2cfo_A 52 YTENILEGLQWLGLTWDEGPYFQSDRLDLYR-QAIQTLLDKGLAYY-----CYCTPEELEALRAEQKAKGQAPRYDNRHR 125 (492)
T ss_dssp HHHHHHHHHHHTTCCCSEEEEEGGGCHHHHH-HHHHHHHHTTSEEE-----ECCCHHHHHHHHHHHHHHTCCSSCCCTTT
T ss_pred HHHHHHHHHHHcCCCCCCCCccccCCHHHHH-HHHHHHHHCCCceE-----ecCCHHHHHHHHHHHHhcCCCCCCCcccc
Confidence 4566666666 9988888999999999999 79999999999994 55443 2322100
Q ss_pred C--------------------------------------CccccCC-ccccccccccCCCCcCCCCCCCcccCCCCCCCC
Q psy6851 168 H--------------------------------------YYAKLVP-EAYGDTKTLQEGEVRGYPPWPARIEGLADETPN 208 (948)
Q Consensus 168 ~--------------------------------------~YgKL~P-~DFaLWK~ak~gEp~wespWg~~~~~m~~~~~G 208 (948)
+ .+.+.++ .||++||..+ +|| .|
T Consensus 126 ~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G~~~~~~~~~~~D~Vl~R~d~-------~p~-----------~G 187 (492)
T 2cfo_A 126 HLTPEEQAAFEAAGRTPVIRFKIEDDRQIEWQDLVRGRVSWQGADLGGDMVIARAAP-------RGE-----------IG 187 (492)
T ss_dssp TCCHHHHHHHHHTTCCCEEEECCCTTCEEEEEETTTEEEEEEGGGGCSSEEEECSCC-------TTS-----------CC
T ss_pred cCCHHHHHHHHhCCCCceEEEEcCCCCceEEEecceeeeeecccccCCCeEEEEecC-------CCC-----------CC
Confidence 0 0011234 6777777643 343 29
Q ss_pred CCcceeEeeccCccccccccccCC---ccccc-----------------ccccc-EEEcccchhhcchhHHHHHHH
Q psy6851 209 RLKYHIFFYGTRETGICRQDELFP---YTEFK-----------------DKYGK-VRVHLSQKQQSLKLVVIMKEF 263 (948)
Q Consensus 209 RPGWHIEcLG~~dih~GG~DL~FP---HHEne-----------------~h~G~-l~i~geKMSKSLGN~vti~ef 263 (948)
+|+||++|- -|.|.+|++++++ ||+|. .|.++ +..+|+||||+.||+ +|.++
T Consensus 188 ~PtY~la~v--vDD~~~gIthviRG~D~~~~t~~q~~l~~alg~~~P~~~H~plil~~~g~KLSKr~g~~-~l~~~ 260 (492)
T 2cfo_A 188 YPLYNLVVV--VDDIAMGITDVIRGEDHIGNTPKQILLYEALGATPPNFAHTPLILNSTGQKLSKRDGVT-SISDF 260 (492)
T ss_dssp CBCHHHHHH--HHHHHTTCSEEEEEGGGTTHHHHHHHHHHHTTCCCCEEEEECCEECSSSSBCCTTSSCC-BHHHH
T ss_pred ceeehhhhh--hhhhcCCCCeEEEchhhhhCHHHHHHHHHHcCCCCceEEEeeeEECCCCCEecccCCcc-cHHHH
Confidence 999999883 3778899999999 98874 33444 467899999999996 55554
No 45
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=98.79 E-value=5.2e-09 Score=127.31 Aligned_cols=113 Identities=17% Similarity=0.088 Sum_probs=82.8
Q ss_pred ccccccccccCCccccc----------------cccccEE-EcccchhhcchhHHHHHHH----------HHHHHHH-Hh
Q psy6851 221 ETGICRQDELFPYTEFK----------------DKYGKVR-VHLSQKQQSLKLVVIMKEF----------FLNVKDH-IR 272 (948)
Q Consensus 221 dih~GG~DL~FPHHEne----------------~h~G~l~-i~geKMSKSLGN~vti~ef----------~l~ls~h-yR 272 (948)
|+|++|.|++|+||.+. ..+|++. .+|+|||||+||+|+..++ |.+++.+ |+
T Consensus 546 dl~~~G~D~~r~w~~~~~~~~~~~~~~~pf~~v~~hg~vl~~~G~KMSKS~GNvV~p~dli~~yGaDalR~~ll~~~~~~ 625 (821)
T 1ile_A 546 DFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPE 625 (821)
T ss_dssp SBEEEEGGGGGTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSSCCCTTTTCCCCHHHHHTTTCHHHHHHHHHHHSCSS
T ss_pred ccccchhhhhccHHHHHHHHHHHhcCCCCcceEEEEeeEECCCCCCCCccCCCCCCHHHHHHHhCHHHHHHHHHhCCCCC
Confidence 68999999999998753 1245655 4899999999999988764 2336665 88
Q ss_pred h-cCCChhhhHH-----HHhhHH---------------------------HhHHHhHHHHHHHHHHHHHHhhcCChHHHH
Q psy6851 273 N-LKFPATTVSS-----FEKWTQ---------------------------ADLELSTRFIQTKNNVHAALCDNMDTRSAL 319 (948)
Q Consensus 273 ~-l~~s~~~l~~-----~~r~~~---------------------------ad~eL~~~l~el~e~F~aAL~DDFNTP~AL 319 (948)
+ ++|+.+.+.. +.++.. .+..+...+..+...|.++| ++|+++.|+
T Consensus 626 ~d~~fs~~~l~~~~~~~~~kl~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~a~-e~~~f~~A~ 704 (821)
T 1ile_A 626 ADRRFGPNLVRETVRDYFLTLWNVYSFFVTYANLDRPDLKNPPPPEKRPEMDRWLLARMQDLIQRVTEAL-EAYDPTTSA 704 (821)
T ss_dssp SCEECCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTTSCCCSTTSCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHH
T ss_pred CCcEecHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHH
Confidence 8 9999876542 112111 01123345667889999999 699999999
Q ss_pred HHHHHHH--HHHHhhhc
Q psy6851 320 DSIRDCI--SQVNIYLR 334 (948)
Q Consensus 320 aaLfeLV--raiN~yLd 334 (948)
++|++++ ..+|.|++
T Consensus 705 ~~l~~f~~~~~~n~Yl~ 721 (821)
T 1ile_A 705 RALRDFVVEDLSQWYVR 721 (821)
T ss_dssp HHHHHHHHHHSSTTTHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 9999999 67888774
No 46
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=98.64 E-value=2.3e-08 Score=122.23 Aligned_cols=113 Identities=16% Similarity=0.122 Sum_probs=83.2
Q ss_pred ccccccccccCCcccccc----------------ccccEE-EcccchhhcchhHHHHHHH-----------HHHHHHHHh
Q psy6851 221 ETGICRQDELFPYTEFKD----------------KYGKVR-VHLSQKQQSLKLVVIMKEF-----------FLNVKDHIR 272 (948)
Q Consensus 221 dih~GG~DL~FPHHEne~----------------h~G~l~-i~geKMSKSLGN~vti~ef-----------~l~ls~hyR 272 (948)
|++++|.|.+|+||.+.+ .+|+|. .+|+|||||+||+|+..++ |++..++|+
T Consensus 483 d~~v~G~Dii~~W~a~~~~~~~~~~g~~Pfk~v~~hG~vld~~G~KMSKSlGNvIdP~dli~~yGaDalR~~ll~~~~~~ 562 (862)
T 1gax_A 483 DVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIYLATGG 562 (862)
T ss_dssp SCEEEEGGGTTTTHHHHHHHHHHHSSSCSBSEEEEECCEECTTSCBCCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCCTT
T ss_pred eEEecCccccccHHHHHHHHHHHhcCCCcccEEEEeeeEEcCCCCCccccCCCCCCHHHHHHHcChHHHHHHHHhcCCCC
Confidence 688899999999998641 135665 5889999999999876653 442334787
Q ss_pred h-cCCChhhhHHH----HhhHH---------------------HhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q psy6851 273 N-LKFPATTVSSF----EKWTQ---------------------ADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCI 326 (948)
Q Consensus 273 ~-l~~s~~~l~~~----~r~~~---------------------ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLV 326 (948)
+ ++|+.+.+... .++.. .+..+...+..+...+.++| ++|++..|+.+|++++
T Consensus 563 ~D~~fs~~~l~~~~~f~nkl~N~~rf~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~-e~~~f~~A~~~l~~f~ 641 (862)
T 1gax_A 563 QDIRLDLRWLEMARNFANKLYNAARFVLLSREGFQAKEDTPTLADRFMRSRLSRGVEEITALY-EALDLAQAAREVYELV 641 (862)
T ss_dssp CCEECCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCBCCCCHHHHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHH
Confidence 7 89998766421 22111 12234456778899999999 8999999999999999
Q ss_pred --HHHHhhhc
Q psy6851 327 --SQVNIYLR 334 (948)
Q Consensus 327 --raiN~yLd 334 (948)
..+|.|++
T Consensus 642 ~~~~~n~Yie 651 (862)
T 1gax_A 642 WSEFCDWYLE 651 (862)
T ss_dssp HHHTTTTHHH
T ss_pred HHHhhHHHHH
Confidence 45788875
No 47
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=98.62 E-value=4e-08 Score=120.26 Aligned_cols=84 Identities=11% Similarity=0.086 Sum_probs=64.3
Q ss_pred chhhcchhHHHHHHH-----------HHHHHH-HHhh-cCCChhhhHHH----HhhHH---------------------H
Q psy6851 249 QKQQSLKLVVIMKEF-----------FLNVKD-HIRN-LKFPATTVSSF----EKWTQ---------------------A 290 (948)
Q Consensus 249 KMSKSLGN~vti~ef-----------~l~ls~-hyR~-l~~s~~~l~~~----~r~~~---------------------a 290 (948)
|||||+||+|+..++ |+ ++. +|++ ++|+++.+... +|+.. .
T Consensus 639 KMSKSkGNvVdP~diIekYGADalRl~l-l~~~~~~~dl~~s~~~ie~a~rfl~rlwn~~~~~~~~~~~~~~~~~~l~~~ 717 (880)
T 4arc_A 639 KMSKSKNNGIDPQVMVERYGADTVRLFM-MFASPADMTLEWQESGVEGANRFLKRVWKLVYEHTAKGDVAALNVDALTEN 717 (880)
T ss_dssp ECCTTTTCCCCHHHHHHHHCHHHHHHHH-HHSSCTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCSTTCCHH
T ss_pred cccCcCCCCCCHHHHHHHcCchHHHHHH-HhcCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCHH
Confidence 999999999987764 44 444 8998 99999876532 22211 1
Q ss_pred hHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhh
Q psy6851 291 DLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYL 333 (948)
Q Consensus 291 d~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yL 333 (948)
+..+...+.++...|.++|+|+|++..|+++|++|++.+|++.
T Consensus 718 D~~ll~~l~~~i~~V~~a~ed~~~fntAi~~l~efvn~l~k~~ 760 (880)
T 4arc_A 718 QKALRRDVHKTIAKVTDDIGRRQTFNTAIAAIMELMNKLAKAP 760 (880)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHhhh
Confidence 2234456778889999999888999999999999999999874
No 48
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=98.49 E-value=9.2e-08 Score=117.77 Aligned_cols=112 Identities=14% Similarity=0.177 Sum_probs=81.7
Q ss_pred ccccccccccCCccccc----------------cccccEEE-cccchhhcchhHHHHHHH-----------HHHHHHHHh
Q psy6851 221 ETGICRQDELFPYTEFK----------------DKYGKVRV-HLSQKQQSLKLVVIMKEF-----------FLNVKDHIR 272 (948)
Q Consensus 221 dih~GG~DL~FPHHEne----------------~h~G~l~i-~geKMSKSLGN~vti~ef-----------~l~ls~hyR 272 (948)
|++++|.|.+|.|.... ..+|+|.. +|+|||||+||+|+..++ |+ ++++|+
T Consensus 550 Dl~~~G~D~~r~wf~~~l~~s~~~~g~~Pfk~v~~hG~V~d~~G~KMSKSlGNvV~P~dvi~~yGaDalR~~l-ls~~~~ 628 (917)
T 1ffy_A 550 DMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVKQKGADIARLWV-SSTDYL 628 (917)
T ss_dssp SEEEEEGGGGTTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSCCCCSSSSCCCCHHHHHHHTCHHHHHHHH-HTSCTT
T ss_pred eEEEEEecccccHHHHHHHHHHHhhCCCcccceeEeeeEEcCCCcCcccccCCcCChHHHHHhCCHHHHHHHH-hccCCC
Confidence 67889999998764321 23588885 899999999999987754 34 567888
Q ss_pred h-cCCChhhhHH----HHhhHH--------------------------HhHHHhHHHHHHHHHHHHHHhhcCChHHHHHH
Q psy6851 273 N-LKFPATTVSS----FEKWTQ--------------------------ADLELSTRFIQTKNNVHAALCDNMDTRSALDS 321 (948)
Q Consensus 273 ~-l~~s~~~l~~----~~r~~~--------------------------ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaa 321 (948)
+ ++|+++.+.. +.++.. .+..+...+.++...+.++| ++|+++.|++.
T Consensus 629 ~D~~fs~~~l~~~~~~~~kl~n~~r~~l~nl~~~~~~~~~v~~~~l~~~D~~il~~l~~~~~~v~~a~-e~~~f~~a~~~ 707 (917)
T 1ffy_A 629 ADVRISDEILKQTSDDYRKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLLNRLREFTASTINNY-ENFDYLNIYQE 707 (917)
T ss_dssp SCEECCHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHCCCGGGSCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHhhhhccCcccccCCccccCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHH
Confidence 8 8999876541 222211 01223345667889999999 89999999999
Q ss_pred HHHHHH--HHHhhhc
Q psy6851 322 IRDCIS--QVNIYLR 334 (948)
Q Consensus 322 LfeLVr--aiN~yLd 334 (948)
|++++. .+|.|++
T Consensus 708 l~~f~~~~l~~~Yl~ 722 (917)
T 1ffy_A 708 VQNFINVELSNFYLD 722 (917)
T ss_dssp HHHHHHCCCCCCHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998 5677764
No 49
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=98.49 E-value=1.6e-07 Score=107.88 Aligned_cols=196 Identities=11% Similarity=0.130 Sum_probs=113.2
Q ss_pred HHHHHHHHcCCeeeeCCcEEEeeccCCCCCCCCccccCCccccccccccCCCCcCCC--------CCCCcccCCCCCCCC
Q psy6851 137 SYIEKIIANGLAYESNGSVYFNVNAFDSQPNHYYAKLVPEAYGDTKTLQEGEVRGYP--------PWPARIEGLADETPN 208 (948)
Q Consensus 137 ~~I~~LI~~G~AYes~GsVYFDv~~f~~~g~~~YgKL~P~DFaLWK~ak~gEp~wes--------pWg~~~~~m~~~~~G 208 (948)
+.|+.|.++|++|+++|.++|+++.|.+ +.|+.+-|. +|.+-..+ -+. .|
T Consensus 177 ~vv~~L~~~g~~~e~dGa~~~~~~~~g~----------~~~~vl~ks--DG~~~Y~t~DiA~~~~r~~----------~~ 234 (464)
T 3fnr_A 177 ATLESLKEHKGIYEQEGKIWLASSQKGD----------EKDRVIIRE--DGRGTYLAADIVYHKDKMS----------RG 234 (464)
T ss_dssp HHHHHHHHTTCEEEETTEEEECGGGGTC----------SSCEEEECT--TSCBCHHHHHHHHHHHHHT----------SS
T ss_pred HHHHHHHHCCCEEEeCCeEEEEecccCC----------CCceEEEeC--CCceehhhHHHHHHHHHHH----------cC
Confidence 4567999999999999999999987643 113333221 23220000 000 01
Q ss_pred CCcceeEeeccC-cccc---------ccccccCCccc-cccccccEEE--ccc--chhhcchhHHHHHHHH---------
Q psy6851 209 RLKYHIFFYGTR-ETGI---------CRQDELFPYTE-FKDKYGKVRV--HLS--QKQQSLKLVVIMKEFF--------- 264 (948)
Q Consensus 209 RPGWHIEcLG~~-dih~---------GG~DL~FPHHE-ne~h~G~l~i--~ge--KMSKSLGN~vti~ef~--------- 264 (948)
+.|-|-..|.. ..|. -|.+ |- . ...++|+|++ +|+ |||||+||+|++.+++
T Consensus 235 -~d~~Iyv~G~dq~~~f~~l~~~l~~lG~~---~~-~~~h~~~g~V~l~~dG~~~KMSKr~Gn~v~l~dll~~~g~dalR 309 (464)
T 3fnr_A 235 -YGKCINIWGADHHGYIPRMKAAMEFLGFD---SN-NLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVDEIGSDALR 309 (464)
T ss_dssp -CSEEEEEEEGGGGGGHHHHHHHHHTTTCC---GG-GEEEEEECCEEEEETTEECCC---CCSSCBHHHHHHHHCHHHHH
T ss_pred -CCeEEEEecCcHHHHHHHHHHHHHHcCCC---cc-ceEEEEeeeEEecCCCcccCCcCcCCCCCCHHHHHhhccHHHHH
Confidence 23333334432 2221 1222 11 1 1145789877 775 9999999999888753
Q ss_pred -HHHHHHHhh-cCCChhhhH-------------HHHhhHH----------------------HhHHHhHHHHHHHHHHHH
Q psy6851 265 -LNVKDHIRN-LKFPATTVS-------------SFEKWTQ----------------------ADLELSTRFIQTKNNVHA 307 (948)
Q Consensus 265 -l~ls~hyR~-l~~s~~~l~-------------~~~r~~~----------------------ad~eL~~~l~el~e~F~a 307 (948)
..++.++++ ++|+.+.+. ++.|+.. .+..+...+.++.+.+..
T Consensus 310 y~~l~~~~~~d~~Fd~~~~~~~~n~npv~YlqYa~aRi~silrk~~~~~~~~~~~~~~~L~~~e~~Ll~~L~~~~~~v~~ 389 (464)
T 3fnr_A 310 YIFLSKKCDTHLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAGKKIDDVMKADLQSLNQDGVNLLFEALNLKAVLND 389 (464)
T ss_dssp HHTTSSCTTSCEEEEGGGGGCCSTTSHHHHHHHHHHHHHHHHHHTTCCTTTSTTCCCTTCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHhcCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhccCCCccccChhhCChHHHHHHHHHHHHHHHHHH
Confidence 225556665 555544321 1122211 123344566777888888
Q ss_pred HHhhcCChHHHHHHHHHHHHHHHhhhcCC-----CCH-----HHHHHHHHHHHHHHhHcccccc
Q psy6851 308 ALCDNMDTRSALDSIRDCISQVNIYLRGT-----PNQ-----LLLRDIGAYVTKILTVFGCIGD 361 (948)
Q Consensus 308 AL~DDFNTP~ALaaLfeLVraiN~yLd~~-----~~~-----~lL~~i~~~V~~mL~VLGL~~~ 361 (948)
|+ ++++...++..|++|++..|++.+.. ... ..+..+. .+..-|.+|||...
T Consensus 390 a~-~~~ep~~i~~yL~~La~~~n~fY~~~~vl~~~~~~~~aRL~L~~a~-vL~~gL~lLGi~ap 451 (464)
T 3fnr_A 390 AF-EARALQKIPDYLKNLAANFHKFYNENKVVGSANENDLLKLFSLVAL-SIKTAFSLMGIEAK 451 (464)
T ss_dssp HH-HHTCTTHHHHHHHHHHHHHHHHHHHCCCTTSTTHHHHHHHHHHHHH-HHHHHHHHTTCCCC
T ss_pred HH-HcCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCHHHHHHHHHHHHHH-HHHHHHHhcCCCch
Confidence 98 89999999999999999999987642 111 1122223 67777999999653
No 50
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=98.36 E-value=2e-07 Score=115.34 Aligned_cols=43 Identities=23% Similarity=0.230 Sum_probs=39.5
Q ss_pred CceeecCCCCCCCCCChhHHHHHhccCCCC-------------CCCccccchhhhH
Q psy6851 833 QLDIHTGGVDLKFPHHDNELAQAEGLPTHD-------------QEGKELSKGLAKK 875 (948)
Q Consensus 833 ~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~-------------~~g~kmsKsl~n~ 875 (948)
++|+|+||.|++||||.++++|+.++++.. .+|+|||||+||+
T Consensus 603 P~Di~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~~G~KMSKS~GNv 658 (967)
T 1wz2_A 603 PLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNV 658 (967)
T ss_dssp SCSEEEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEESSSCCCTTTCCC
T ss_pred CCeEEeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEeeCCEEccccccCC
Confidence 689999999999999999999999987641 5999999999999
No 51
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=98.34 E-value=6.8e-08 Score=117.27 Aligned_cols=43 Identities=23% Similarity=0.213 Sum_probs=39.5
Q ss_pred CceeecCCCCCCCCCChhHHHHHhccCCC----C---------CCCccccchhhhH
Q psy6851 833 QLDIHTGGVDLKFPHHDNELAQAEGLPTH----D---------QEGKELSKGLAKK 875 (948)
Q Consensus 833 ~~dih~GG~Dl~FPHH~ne~aq~e~~~~~----~---------~~g~kmsKsl~n~ 875 (948)
++|||+||.|++||||.++++|+.++++. . .+|+|||||+||+
T Consensus 603 p~Di~~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~~G~KMSKS~GNv 658 (810)
T 1wkb_A 603 PLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNV 658 (810)
T ss_dssp SCSEEEEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEETTBCCCTTTTCC
T ss_pred CceEEeecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEeCCeehhhcCCCc
Confidence 68999999999999999999999998764 1 6999999999999
No 52
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=98.30 E-value=1.9e-06 Score=105.81 Aligned_cols=144 Identities=15% Similarity=0.202 Sum_probs=78.0
Q ss_pred cchhhcchhHHHHHHH-----------HHHHHHHHhh-cCCChhhhHH----HHhhHH----------------------
Q psy6851 248 SQKQQSLKLVVIMKEF-----------FLNVKDHIRN-LKFPATTVSS----FEKWTQ---------------------- 289 (948)
Q Consensus 248 eKMSKSLGN~vti~ef-----------~l~ls~hyR~-l~~s~~~l~~----~~r~~~---------------------- 289 (948)
+|||||+||+|+..++ |++..+.|.+ ++|+.+.+.. +.|+..
T Consensus 636 ~KMSKSkGNvVdP~diI~~yGADalRl~ll~~~~~~~D~~fs~~~v~~~~~~l~Rl~n~~~~~~~~~~~~~~~~~~~~l~ 715 (878)
T 2v0c_A 636 AVMSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAWRFLNRIYRRVAEDREALLETSGVFQAEALE 715 (878)
T ss_dssp EECSGGGTCCCBHHHHHHHSCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCGGGCC
T ss_pred HHhhccCCCcccHHHHHHHcCccHHHHHHhccCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcccCC
Confidence 8999999999987654 4423367777 8898876542 122110
Q ss_pred -HhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHH------------hHc
Q psy6851 290 -ADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGTPNQLLLRDIGAYVTKIL------------TVF 356 (948)
Q Consensus 290 -ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~~~~~~lL~~i~~~V~~mL------------~VL 356 (948)
.+..+...+..+...+.++| ++|++..|++.|++|++..|++.+.......+..++..+..|| ..|
T Consensus 716 ~~D~~ll~~l~~~i~~v~~~~-e~~~f~~Ai~~l~~f~~~l~k~~~~~~~~~~l~~~l~~l~~LLaPf~P~~aEElw~~L 794 (878)
T 2v0c_A 716 GKDRELYGKLHETLKKVTEDL-EALRFNTAIAALMEFLNALYEYRKDRPVTPVYRTAIRYYLQMLFPFAPHLAEELWHWF 794 (878)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHTTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHcccchHHHHHHHHHc
Confidence 12234456778899999999 9999999999999999999998653211133444444444443 456
Q ss_pred ccccccccCCCCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHH
Q psy6851 357 GCIGDVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTE 400 (948)
Q Consensus 357 GL~~~~~~ig~~~~~~~~~~ss~eel~~~~Ld~Lv~~R~~iR~~ 400 (948)
| ........|+... . ..++...++.++++|.++|..
T Consensus 795 g-~~sv~~~~wP~~d----~---~~l~~~~~~~~vqvngkvR~~ 830 (878)
T 2v0c_A 795 W-PDSLFEAGWPELD----E---KALEKDVVEVAVQVNGAVAGT 830 (878)
T ss_dssp C-SSCGGGSCCCCCC----G---GGGC-----------------
T ss_pred C-CCceeecCCCCCC----H---HHHHHHHHHHHHhhHHHHHHH
Confidence 6 2111112354321 1 111223467788888777765
No 53
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=98.29 E-value=1.7e-07 Score=114.90 Aligned_cols=60 Identities=10% Similarity=-0.114 Sum_probs=53.9
Q ss_pred cHHHHHHHHHHHHhhcCCCCC---CeeecccccHHHHHHHHhCcccCCC-cccCCcccccCCCC
Q psy6851 627 LPKHWEAEFHKDMADLNVLPP---TVLTRVSEYIPEIVASAQTPKPAAA-KKAESSSDDDSSSE 686 (948)
Q Consensus 627 ~~~~~~~~f~~dm~~L~v~~p---~~~~rvse~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvsse 686 (948)
++.+|.+.|.++|++|||... .+.|...+|+..+..++.+|.++|+ |+..+.|||+.+++
T Consensus 100 ~~~~~~~~~~~~~~~LGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliY~~~~~v~w~p~~~ 163 (878)
T 2v0c_A 100 WTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQ 163 (878)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHHhCCccCcCCCeecCCHHHHHHHHHHHHHHHHCCCEEEcceeEEEeCCCC
Confidence 457899999999999999987 5567788899999999999999999 99999999998775
No 54
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=97.85 E-value=4e-06 Score=102.86 Aligned_cols=60 Identities=12% Similarity=-0.099 Sum_probs=45.8
Q ss_pred cHHHHHHHHHHHHhhcCCCCC---CeeecccccHHHHHHHHhCcccCCC-cccCCcccccCCCC
Q psy6851 627 LPKHWEAEFHKDMADLNVLPP---TVLTRVSEYIPEIVASAQTPKPAAA-KKAESSSDDDSSSE 686 (948)
Q Consensus 627 ~~~~~~~~f~~dm~~L~v~~p---~~~~rvse~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvsse 686 (948)
++..+.+.|.++|++|||... .+.|.-.+|...+..++.+|.++|+ |+.++.||||.+++
T Consensus 120 ~~~~~i~~~~~~l~~LGis~Dw~~~~~T~d~~~~~~v~~~f~~L~ekGliY~~~~~v~wcp~~~ 183 (880)
T 4arc_A 120 WTYDNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCPNDQ 183 (880)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHHTTCEEEEEECC-------
T ss_pred HHHHHHHHHHHHHHHhCCCcCCCCCEEcCCHHHHHHHHHHHHHHHHCCCEEEeceeEeecCCcC
Confidence 356788999999999999875 3455556799999999999999999 99999999997664
No 55
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=97.83 E-value=3.7e-06 Score=102.42 Aligned_cols=43 Identities=16% Similarity=0.112 Sum_probs=39.7
Q ss_pred CceeecCCCCCCCCCChhHHHHHhccCCCC-------------CCCccccchhhhH
Q psy6851 833 QLDIHTGGVDLKFPHHDNELAQAEGLPTHD-------------QEGKELSKGLAKK 875 (948)
Q Consensus 833 ~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~-------------~~g~kmsKsl~n~ 875 (948)
+.|+|+||.|++|+||.+.++++.++++.. .+|+|||||+||+
T Consensus 544 P~dl~~~G~D~~r~w~~~~~~~~~~~~~~~pf~~v~~hg~vl~~~G~KMSKS~GNv 599 (821)
T 1ile_A 544 PADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNV 599 (821)
T ss_dssp SBSBEEEEGGGGGTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSSCCCTTTTCC
T ss_pred CcccccchhhhhccHHHHHHHHHHHhcCCCCcceEEEEeeEECCCCCCCCccCCCC
Confidence 789999999999999999999999987653 5999999999999
No 56
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=97.83 E-value=1.6e-05 Score=97.56 Aligned_cols=43 Identities=16% Similarity=0.177 Sum_probs=39.4
Q ss_pred CceeecCCCCCCCCCChhHHHHHhccCCCC-------------CCCccccchhhhH
Q psy6851 833 QLDIHTGGVDLKFPHHDNELAQAEGLPTHD-------------QEGKELSKGLAKK 875 (948)
Q Consensus 833 ~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~-------------~~g~kmsKsl~n~ 875 (948)
+.|+|.+|.|++|+||.+.++++.+++|.. .+|+|||||+||+
T Consensus 481 P~d~~v~G~Dii~~W~a~~~~~~~~~~g~~Pfk~v~~hG~vld~~G~KMSKSlGNv 536 (862)
T 1gax_A 481 PGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQKMSKSKGNV 536 (862)
T ss_dssp SBSCEEEEGGGTTTTHHHHHHHHHHHSSSCSBSEEEEECCEECTTSCBCCTTTTCC
T ss_pred CceEEecCccccccHHHHHHHHHHHhcCCCcccEEEEeeeEEcCCCCCccccCCCC
Confidence 579999999999999999999999887652 5899999999999
No 57
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=97.31 E-value=0.00042 Score=81.81 Aligned_cols=46 Identities=11% Similarity=-0.067 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCCee---------ecccccHHHHHHHHhCcccCCC-cc
Q psy6851 628 PKHWEAEFHKDMADLNVLPPTVL---------TRVSEYIPEIVASAQTPKPAAA-KK 674 (948)
Q Consensus 628 ~~~~~~~f~~dm~~L~v~~p~~~---------~rvse~i~~ii~~i~~l~~~g~-Y~ 674 (948)
...|++...+||+.|||. ++.- .+.|++.+...+++++|+++|+ |.
T Consensus 177 ~~~~~~~I~~dL~wlGl~-~D~~~~~gG~~gp~~qSer~~~y~~~~~~L~~~G~aY~ 232 (592)
T 3al0_C 177 SREYEQQILESLRWCGLD-WDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYY 232 (592)
T ss_dssp CHHHHHHHHHHHHHTTCC-CSBBTTTBCTTCCCBSTTCHHHHHHHHHHHHHTTTEEE
T ss_pred cHHHHHHHHHHHHHcCCC-CCCCCCcCCCCCCeeeeCCHHHHHHHHHHHHHcCCceE
Confidence 468999999999999997 4664 4999999999999999999999 85
No 58
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=97.28 E-value=0.00024 Score=83.86 Aligned_cols=43 Identities=19% Similarity=0.049 Sum_probs=33.5
Q ss_pred HHHHHHHHHhc--CCCCCCccc---------cccccHHHHHHHHHHHHHHcCCeee
Q psy6851 106 METDKYSQFDE--TVLPPTVLT---------RVSEYIPEIVASYIEKIIANGLAYE 150 (948)
Q Consensus 106 ~~~~~f~~dm~--nV~~P~~~p---------RvTe~IpeII~~~I~~LI~~G~AYe 150 (948)
.+.+.+.+++. |+. ++--| +.|++.+..- +++++|+++|+||.
T Consensus 179 ~~~~~I~~dL~wlGl~-~D~~~~~gG~~gp~~qSer~~~y~-~~~~~L~~~G~aY~ 232 (592)
T 3al0_C 179 EYEQQILESLRWCGLD-WDEGPDIGGDFGPYRQSERLEIYR-EYAEKLVEDKRAYY 232 (592)
T ss_dssp HHHHHHHHHHHHTTCC-CSBBTTTBCTTCCCBSTTCHHHHH-HHHHHHHHTTTEEE
T ss_pred HHHHHHHHHHHHcCCC-CCCCCCcCCCCCCeeeeCCHHHHH-HHHHHHHHcCCceE
Confidence 34555555555 875 55543 9999999998 79999999999996
No 59
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=97.21 E-value=0.00014 Score=83.93 Aligned_cols=75 Identities=21% Similarity=0.358 Sum_probs=54.1
Q ss_pred CCCCCcceeeccCCCCCcccCCCCCCCCchhHHHHHHHHhhcCCCceeecCCCCCCCCCChhHHHHHhccCCCC------
Q psy6851 789 RSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLPTHD------ 862 (948)
Q Consensus 789 ~~~~DfaLwk~~k~~ep~w~spwg~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~------ 862 (948)
.+..||+|||.. |.|.||+.|. +.-...|.+-.| .|.|+. +|...-++..+++.-..
T Consensus 190 ~~~~D~Vl~RsD-------------G~ptY~~a~v-vDD~~~githvi--rG~D~~-~~t~~q~~l~~aLG~~~p~~~H~ 252 (481)
T 2o5r_A 190 GAIGDFVIMRSN-------------GLPTYNFACV-VDDMLMEITHVI--RGDDHL-SNTLRQLALYEAFEKAPPVFAHV 252 (481)
T ss_dssp TSSCBEEEECTT-------------SCBCHHHHHH-HHHHHTTCSEEE--EEGGGH-HHHHHHHHHHHHTTCCCCEEEEE
T ss_pred ccCCCeEEEccC-------------CCcchhhHHH-HHHHhCCCCeEE--EChhHH-HhHHHHHHHHHHcCCCCCeEEEE
Confidence 455699999973 9999999998 455566776666 788965 55555555566653211
Q ss_pred -----CCCccccchhhhH-hhhHH
Q psy6851 863 -----QEGKELSKGLAKK-LKKLQ 880 (948)
Q Consensus 863 -----~~g~kmsKsl~n~-l~~~~ 880 (948)
.+|+||||+.|++ |..+.
T Consensus 253 plil~~~G~KLSKR~g~~~l~~~~ 276 (481)
T 2o5r_A 253 STILGPDGKKLSKRHGATSVEAFR 276 (481)
T ss_dssp CCEECTTSSBCCGGGSCCBHHHHH
T ss_pred eeEECCCCCcccCcCCcccHHHHH
Confidence 5899999999999 55553
No 60
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=97.14 E-value=0.00056 Score=78.70 Aligned_cols=46 Identities=15% Similarity=-0.061 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCCee---------ecccccHHHHHHHHhCcccCCC-cc
Q psy6851 628 PKHWEAEFHKDMADLNVLPPTVL---------TRVSEYIPEIVASAQTPKPAAA-KK 674 (948)
Q Consensus 628 ~~~~~~~f~~dm~~L~v~~p~~~---------~rvse~i~~ii~~i~~l~~~g~-Y~ 674 (948)
...|++...+||..||+.+ +-. .+.|++.+...+++++|+++|. |.
T Consensus 49 ~~~~~~~I~~dl~wlGl~w-d~~~~~gG~~gp~~QS~r~~~y~~~~~~L~~~G~aY~ 104 (468)
T 1j09_A 49 VPGAEERILAALKWLGLSY-DEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYR 104 (468)
T ss_dssp CTTHHHHHHHHHHHTTCCC-SBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHHTSEEE
T ss_pred ChHHHHHHHHHHHHcCCCC-CCCCCCCCCCCCeeccCCHHHHHHHHHHHHHcCCeEE
Confidence 3479999999999999985 554 6999999999999999999999 85
No 61
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=96.92 E-value=0.0017 Score=75.19 Aligned_cols=46 Identities=11% Similarity=-0.067 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCCee---------ecccccHHHHHHHHhCcccCCC-cc
Q psy6851 628 PKHWEAEFHKDMADLNVLPPTVL---------TRVSEYIPEIVASAQTPKPAAA-KK 674 (948)
Q Consensus 628 ~~~~~~~f~~dm~~L~v~~p~~~---------~rvse~i~~ii~~i~~l~~~g~-Y~ 674 (948)
...+++...+||+.|||. ++.- .+.|++.+...+++++|+++|+ |.
T Consensus 73 ~~~~~~~I~~dL~wlGl~-wDe~~~~gG~~gp~~QSer~~~y~~~~~~L~~~G~aY~ 128 (488)
T 3afh_A 73 SREYEQQILESLRWCGLD-WDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYY 128 (488)
T ss_dssp CHHHHHHHHHHHHHTTCC-CSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEE
T ss_pred cHHHHHHHHHHHHHcCCC-CCcCCCCCCCCCCeeeeCCHHHHHHHHHHHHHcCCeEe
Confidence 468999999999999998 4664 4999999999999999999999 85
No 62
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=96.90 E-value=0.00059 Score=84.30 Aligned_cols=44 Identities=20% Similarity=0.199 Sum_probs=39.6
Q ss_pred CCceeecCCCCCCCCCChhHHHHHhccCCCC-------------CCCccccchhhhH
Q psy6851 832 PQLDIHTGGVDLKFPHHDNELAQAEGLPTHD-------------QEGKELSKGLAKK 875 (948)
Q Consensus 832 ~~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~-------------~~g~kmsKsl~n~ 875 (948)
-+.|+|.+|.|++|.|+..-++++.+++|.. .+|+|||||+||+
T Consensus 547 ~P~Dl~~~G~D~~r~wf~~~l~~s~~~~g~~Pfk~v~~hG~V~d~~G~KMSKSlGNv 603 (917)
T 1ffy_A 547 FPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNV 603 (917)
T ss_dssp SSBSEEEEEGGGGTTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSCCCCSSSSCC
T ss_pred CCceEEEEEecccccHHHHHHHHHHHhhCCCcccceeEeeeEEcCCCcCcccccCCc
Confidence 4689999999999999999999999987653 3899999999999
No 63
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=96.67 E-value=0.0009 Score=77.41 Aligned_cols=42 Identities=19% Similarity=0.050 Sum_probs=33.2
Q ss_pred HHHHHHHHhc--CCCCCCcc---------ccccccHHHHHHHHHHHHHHcCCeee
Q psy6851 107 ETDKYSQFDE--TVLPPTVL---------TRVSEYIPEIVASYIEKIIANGLAYE 150 (948)
Q Consensus 107 ~~~~f~~dm~--nV~~P~~~---------pRvTe~IpeII~~~I~~LI~~G~AYe 150 (948)
+.+.+.+++. |+. ++-- -+.|++.+..- +++++|+++|+||.
T Consensus 76 ~~~~I~~dL~wlGl~-wDe~~~~gG~~gp~~QSer~~~y~-~~~~~L~~~G~aY~ 128 (488)
T 3afh_A 76 YEQQILESLRWCGLD-WDEGPDIGGDFGPYRQSERLEIYR-EYAEKLVEDKRAYY 128 (488)
T ss_dssp HHHHHHHHHHHTTCC-CSBBTTTBCTTCCCBGGGCHHHHH-HHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCCC-CCcCCCCCCCCCCeeeeCCHHHHH-HHHHHHHHcCCeEe
Confidence 4455555665 885 5554 49999999998 79999999999996
No 64
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=96.20 E-value=0.0032 Score=72.72 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=23.3
Q ss_pred ccccccHHHHHHHHHHHHHHcCCeee
Q psy6851 125 TRVSEYIPEIVASYIEKIIANGLAYE 150 (948)
Q Consensus 125 pRvTe~IpeII~~~I~~LI~~G~AYe 150 (948)
.|.|++++.+. +++++|+++|+||.
T Consensus 92 y~QS~r~~~y~-~~a~~L~~~G~aY~ 116 (481)
T 2o5r_A 92 YRQSERVEIYR-EHAERLVKEGKAYY 116 (481)
T ss_dssp CBGGGGHHHHH-HHHHHHHHTTSEEE
T ss_pred eeeeccHHHHH-HHHHHHHHCCCeeE
Confidence 47999999999 79999999999995
No 65
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=96.00 E-value=0.0037 Score=71.96 Aligned_cols=42 Identities=21% Similarity=0.248 Sum_probs=32.6
Q ss_pred HHHHHHHHhc--CCCCCCcc---------ccccccHHHHHHHHHHHHHHcCCeee
Q psy6851 107 ETDKYSQFDE--TVLPPTVL---------TRVSEYIPEIVASYIEKIIANGLAYE 150 (948)
Q Consensus 107 ~~~~f~~dm~--nV~~P~~~---------pRvTe~IpeII~~~I~~LI~~G~AYe 150 (948)
+.+.+.+++. |+. |+-. .+.|++.+... +++++|+++|+||.
T Consensus 52 ~~~~I~~dl~wlGl~-wd~~~~~gG~~gp~~QS~r~~~y~-~~~~~L~~~G~aY~ 104 (468)
T 1j09_A 52 AEERILAALKWLGLS-YDEGPDVGGPHGPYRQSERLPLYQ-KYAEELLKRGWAYR 104 (468)
T ss_dssp HHHHHHHHHHHTTCC-CSBBTTTBCTTCCCBGGGCHHHHH-HHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHcCCC-CCCCCCCCCCCCCeeccCCHHHHH-HHHHHHHHcCCeEE
Confidence 3445555555 876 4444 59999999999 79999999999995
No 66
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=95.82 E-value=0.0015 Score=75.46 Aligned_cols=45 Identities=7% Similarity=-0.186 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cc
Q psy6851 630 HWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KK 674 (948)
Q Consensus 630 ~~~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~ 674 (948)
.|++.+++||+.|||.++....+.|+|++.+.+++++|+++|+ |.
T Consensus 75 ~~~~~i~~dl~wlGl~~d~~~~~qS~r~~~y~~~~~~Li~~G~aY~ 120 (490)
T 4g6z_A 75 EAVDAILEGMAWLGLDYDEGPYYQMQRMDRYREVLAQMQEKGLVYP 120 (490)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEEGGGCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHcCCCCCCCCcccccCHHHHHHHHHHHHHCCCEEe
Confidence 5788999999999999877778999999999999999999999 84
No 67
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=94.62 E-value=0.089 Score=60.52 Aligned_cols=55 Identities=11% Similarity=0.044 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cccCCcccccCCC
Q psy6851 630 HWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KKAESSSDDDSSS 685 (948)
Q Consensus 630 ~~~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvss 685 (948)
.-.+.|.+++++|||.- |.+..=|...+.|-+.|+.|.++|. |+.+|.++++++.
T Consensus 146 ~~l~~~~~~~~~l~V~f-D~~~~Ess~~~~~~~vv~~L~~~g~~~e~dGa~~~~~~~ 201 (464)
T 3fnr_A 146 KMLVLIKQNLEQAKIKI-DSYVSERSYYDALNATLESLKEHKGIYEQEGKIWLASSQ 201 (464)
T ss_dssp HHHHHHHHHHHHTTCCC-SCEEEGGGGSTTHHHHHHHHHHTTCEEEETTEEEECGGG
T ss_pred HHHHHHHHHHHHhCCCc-eeecCHHHHHHHHHHHHHHHHHCCCEEEeCCeEEEEecc
Confidence 34678999999999986 6554333332355556667999999 9999999988765
No 68
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=87.54 E-value=0.44 Score=55.25 Aligned_cols=46 Identities=9% Similarity=-0.037 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeee
Q psy6851 104 FKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYE 150 (948)
Q Consensus 104 ~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYe 150 (948)
...+++.+.++|. ||.++....+.|+|++.+. +++++|+++|+||.
T Consensus 73 ~~~~~~~i~~dl~wlGl~~d~~~~~qS~r~~~y~-~~~~~Li~~G~aY~ 120 (490)
T 4g6z_A 73 SQEAVDAILEGMAWLGLDYDEGPYYQMQRMDRYR-EVLAQMQEKGLVYP 120 (490)
T ss_dssp CHHHHHHHHHHHHHTTCCCSEEEEEGGGCHHHHH-HHHHHHHHTTSEEE
T ss_pred cHHHHHHHHHHHHHcCCCCCCCCcccccCHHHHH-HHHHHHHHCCCEEe
Confidence 3456777777777 9987777789999999999 79999999999995
No 69
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=77.29 E-value=0.5 Score=51.58 Aligned_cols=51 Identities=20% Similarity=0.258 Sum_probs=33.3
Q ss_pred HHHHhhcCCCceeecCCCCCCCCCChh--HHHHHhccCC-----CC----CCCccccchhhhH
Q psy6851 824 VMASAVLGPQLDIHTGGVDLKFPHHDN--ELAQAEGLPT-----HD----QEGKELSKGLAKK 875 (948)
Q Consensus 824 ~m~~~~lg~~~dih~GG~Dl~FPHH~n--e~aq~e~~~~-----~~----~~g~kmsKsl~n~ 875 (948)
.|+..++--..|+--||.|..+ |++- ++|+.-.+.. .+ .+|+|||||.+|.
T Consensus 161 lqaaD~l~~~~~~v~~G~DQ~~-~~~l~rdla~~~~~~~p~~l~~pll~~l~G~KMSKS~~n~ 222 (323)
T 2cyb_A 161 MQALDIAHLGVDLAVGGIDQRK-IHMLARENLPRLGYSSPVCLHTPILVGLDGQKMSSSKGNY 222 (323)
T ss_dssp HHHHHHHHTTCSEEEEEGGGHH-HHHHHHHHGGGGTCCCCEEEEECCCBCTTSSBCCTTTTCS
T ss_pred HHHHHHHhcCCCEEEechhhHH-HHHHHHHHHHhcCCCCceEEecCcccCCCCCcccCCcCce
Confidence 3555555557888899999876 6663 4444322110 01 6899999999997
No 70
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=68.67 E-value=0.8 Score=50.17 Aligned_cols=41 Identities=15% Similarity=0.144 Sum_probs=29.2
Q ss_pred CceeecCCCCCCCCCCh--hHHHHHhccCCCC----------CCCccccchhhhH
Q psy6851 833 QLDIHTGGVDLKFPHHD--NELAQAEGLPTHD----------QEGKELSKGLAKK 875 (948)
Q Consensus 833 ~~dih~GG~Dl~FPHH~--ne~aq~e~~~~~~----------~~g~kmsKsl~n~ 875 (948)
..||..||.|=. ||.+ -|+|+--.. +.. .+|.|||||.+|.
T Consensus 191 ~~~v~~gG~DQ~-~~i~l~rdla~r~n~-~~~~~l~~pll~gldG~KMSKS~~n~ 243 (322)
T 2yxn_A 191 GVVLCIGGSDQW-GNITSGIDLTRRLHQ-NQVFGLTVPLITKADGTKFGKTEGGA 243 (322)
T ss_dssp CEEEEEECTTCH-HHHHHHHHHHHHHHC-CCCEEEECCCCBCTTSCBTTEETTEE
T ss_pred CceEEecCchhH-HHHHHHHHHHHHhCC-CCceeeccCccCCCCcccccCCCCCe
Confidence 678999999965 6776 455654332 111 5899999999996
No 71
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=61.92 E-value=2 Score=47.05 Aligned_cols=52 Identities=21% Similarity=0.233 Sum_probs=37.0
Q ss_pred HHHHHhhcCCCceeecCCCCCCCCCCh--hHHHHHh------------ccCC--CC----CCCccccchhhhH
Q psy6851 823 SVMASAVLGPQLDIHTGGVDLKFPHHD--NELAQAE------------GLPT--HD----QEGKELSKGLAKK 875 (948)
Q Consensus 823 s~m~~~~lg~~~dih~GG~Dl~FPHH~--ne~aq~e------------~~~~--~~----~~g~kmsKsl~n~ 875 (948)
.-||..+|--..|+--||.|=. ||++ -|+|+-- +..+ .+ .+|.|||||.+|.
T Consensus 129 ~LQAaDil~~~~~~vpvG~DQ~-~hi~l~Rdia~r~n~~~g~~f~~P~~~~~~~~~~l~~l~G~KMSKS~~n~ 200 (322)
T 3tzl_A 129 VLMAADILLFDTRIVPVGKDQI-QHVEIARDIALKVNNEWGEIFTLPEARVNEEVAVVVGTDGAKMSKSYQNT 200 (322)
T ss_dssp HHHHHHHHHTTCSEEECCGGGH-HHHHHHHHHHHHHHHHHCSCSCCCEEECCCSSCCCBCTTSSBCCGGGTCC
T ss_pred HHHHHHHHHhCCcEEEeccchH-HHHHHHHHHHHHhcccccCCCCCchhhhccccccccCCCCCcCCCCCCCc
Confidence 4566666666788888999965 5776 4777653 2232 11 7899999999997
No 72
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=53.18 E-value=2.2 Score=48.66 Aligned_cols=41 Identities=17% Similarity=0.149 Sum_probs=27.3
Q ss_pred CceeecCCCCCCCCCCh--hHHHHHhccCC-----CC----CCCccccchhhh
Q psy6851 833 QLDIHTGGVDLKFPHHD--NELAQAEGLPT-----HD----QEGKELSKGLAK 874 (948)
Q Consensus 833 ~~dih~GG~Dl~FPHH~--ne~aq~e~~~~-----~~----~~g~kmsKsl~n 874 (948)
..||-.||.|=. ||.+ -|+|+--.... .+ .+|.|||||.+|
T Consensus 187 ~~~i~~gG~DQ~-~ni~lgrdlarr~~~~~~~~l~~plL~~ldG~KMSKS~~n 238 (432)
T 2jan_A 187 GCTLQIGGADQW-GNIIAGVRLVRQKLGATVHALTVPLVTAADGTKFGKSTGG 238 (432)
T ss_dssp CCCEEEECSTTH-HHHHHHHHHHHHHHCCCCEEEECCCCBCTTSCBTTBCSSS
T ss_pred CCcEEeccHHHH-HHHHHHHHHHHHhCCCCccccccccccCCCcCcCCCCCCC
Confidence 678888888865 4655 35554432110 01 689999999999
No 73
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=49.89 E-value=2.6 Score=47.94 Aligned_cols=41 Identities=27% Similarity=0.338 Sum_probs=28.2
Q ss_pred CceeecCCCCCCCCCCh--hHHHHHh-ccCCCC----------CCCccccchhhhH
Q psy6851 833 QLDIHTGGVDLKFPHHD--NELAQAE-GLPTHD----------QEGKELSKGLAKK 875 (948)
Q Consensus 833 ~~dih~GG~Dl~FPHH~--ne~aq~e-~~~~~~----------~~g~kmsKsl~n~ 875 (948)
..||-.||.|=. ||.+ -|+|.-- .. +.. .+|.|||||.+|.
T Consensus 186 ~~~i~~gG~DQ~-~ni~~grdla~r~~~~-~~~~~l~~pll~~ldG~KMSKS~~na 239 (420)
T 1jil_A 186 NCKIQVGGSDQW-GNITSGIELMRRMYGQ-TDAYGLTIPLVTKSDGKKFGKSESGA 239 (420)
T ss_dssp CEEEEEEEGGGH-HHHHHHHHHHHHHHCC-CCCEEEEECCCBCTTSCBTTBCSSSB
T ss_pred CCcEEeccHHHH-HHHHHHHHHHHHhcCC-CCeeEeecccccCCccccccCCCCCe
Confidence 688888999865 4666 3555443 21 111 6899999999996
No 74
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=49.48 E-value=2.3 Score=47.34 Aligned_cols=41 Identities=17% Similarity=0.129 Sum_probs=16.0
Q ss_pred CceeecCCCCCCCCCCh--hHHHHHhccCCCC----------CCCccccchhhhH
Q psy6851 833 QLDIHTGGVDLKFPHHD--NELAQAEGLPTHD----------QEGKELSKGLAKK 875 (948)
Q Consensus 833 ~~dih~GG~Dl~FPHH~--ne~aq~e~~~~~~----------~~g~kmsKsl~n~ 875 (948)
..||--||.|=. ||.+ -|+|+--.. +.. .+|.|||||.+|.
T Consensus 210 ~~~i~p~G~DQ~-~~i~l~rdla~r~n~-~~~~~l~~pll~~ldG~KMSKS~~na 262 (356)
T 2pid_A 210 GCRVQLGGSDQL-GNIMSGYEFINKLTG-EDVFGITVPLITSTTGAKLGKSAGNA 262 (356)
T ss_dssp CCCEEEEEGGGH-HHHHHHHHHHHHHSS-CCCEEEEECCCC-------------C
T ss_pred CCcEEeccHHHH-HHHHHHHHHHHHhCC-CCccccccccccCCCcccccCCCCCe
Confidence 677777888864 5666 355544321 111 6899999999997
No 75
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=48.68 E-value=1.5 Score=47.85 Aligned_cols=51 Identities=16% Similarity=0.190 Sum_probs=29.7
Q ss_pred HHHHhhcCCCceeecCCCCCCCCCCh--hHHHHHhccCC-CC----CCC-ccccchhhhH
Q psy6851 824 VMASAVLGPQLDIHTGGVDLKFPHHD--NELAQAEGLPT-HD----QEG-KELSKGLAKK 875 (948)
Q Consensus 824 ~m~~~~lg~~~dih~GG~Dl~FPHH~--ne~aq~e~~~~-~~----~~g-~kmsKsl~n~ 875 (948)
-||..+|-...|+-.||.|-.+ |.+ -++|+-+.+.. .+ .+| .|||||.+|.
T Consensus 154 LQaaDil~~~~~~v~~G~DQ~~-~~~l~R~i~~~~~~~~~~~~l~~l~G~~KMSKS~~~~ 212 (314)
T 2zp1_A 154 MQVNTSHYLGVDVAVGGMEQRK-IHMLARELLPKKVVCIHNPVLTGLDGEGKMSSSKGNF 212 (314)
T ss_dssp HHHHHHHHHTCSEEEEEGGGHH-HHHHHHHHSSSCCEEEEECCCBCTTSSSBCCTTTTCS
T ss_pred HHHHhHHhhCCCEEEcChhHHH-HHHHHHHhcCCCcEEeeccccccCCcccccCCCCcce
Confidence 3444444446778889999876 432 22332121110 01 568 8999999886
No 76
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=47.89 E-value=3.4 Score=47.11 Aligned_cols=50 Identities=24% Similarity=0.320 Sum_probs=31.9
Q ss_pred HHHhhcCCCceeecCCCCCCCCCCh--hHHHHHhccC-----CCC----CCCc-cccchhhhH
Q psy6851 825 MASAVLGPQLDIHTGGVDLKFPHHD--NELAQAEGLP-----THD----QEGK-ELSKGLAKK 875 (948)
Q Consensus 825 m~~~~lg~~~dih~GG~Dl~FPHH~--ne~aq~e~~~-----~~~----~~g~-kmsKsl~n~ 875 (948)
|+..+|--..|+--||.|=. ||.+ -|+|..-... ..+ .+|. |||||.+|.
T Consensus 179 QaaDil~l~~~l~~gG~DQ~-~ni~l~rdlarr~~~~~~~~lt~pll~gldG~~KMSKS~~n~ 240 (432)
T 1h3f_A 179 QAYDSVAIRADVEMGGTDQR-FNLLVGREVQRAYGQSPQVCFLMPLLVGLDGREKMSKSLDNY 240 (432)
T ss_dssp HHHHHHHHTCSEEEEEGGGH-HHHHHHHHHHHHTTCCCCEEEEECCCBCTTSSSBCCGGGTCC
T ss_pred HhhhhhhcCccEEEechHHH-HHHHHHHHHHHHhCCCCceEeecccccCCCCccccCcCCCCe
Confidence 34443333578888999987 6877 4566543210 011 6885 999999996
No 77
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=46.94 E-value=2.7 Score=47.84 Aligned_cols=41 Identities=20% Similarity=0.258 Sum_probs=28.0
Q ss_pred CceeecCCCCCCCCCCh--hHHHHHh-ccCCCC----------CCCccccchhhhH
Q psy6851 833 QLDIHTGGVDLKFPHHD--NELAQAE-GLPTHD----------QEGKELSKGLAKK 875 (948)
Q Consensus 833 ~~dih~GG~Dl~FPHH~--ne~aq~e-~~~~~~----------~~g~kmsKsl~n~ 875 (948)
..||-.||.|=. ||.+ -|+|.-- .. +.. .+|.|||||.+|.
T Consensus 185 ~~~i~~gG~DQ~-~ni~lgrdlarr~~~~-~~~~~lt~pll~~ldG~KMSKS~~na 238 (419)
T 2ts1_A 185 GCRLQIGGSDQW-GNITAGLELIRKTKGE-ARAFGLTIPLVTKADGTKFGKTESGT 238 (419)
T ss_dssp CEEEEEEEGGGH-HHHHHHHHHHHHHHC---CCEEEEECCCCCTTSCCTTCCSSCC
T ss_pred CCcEEeccHHHH-HHHHHHHHHHHHhcCC-CCeeecccccccCCCcccccCCCCCe
Confidence 688888999965 4666 3555443 21 111 6899999999997
No 78
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=44.80 E-value=6.2 Score=43.30 Aligned_cols=51 Identities=27% Similarity=0.232 Sum_probs=34.6
Q ss_pred HHHHHhhcCCCceeecCCCCCCCCCCh--hHHHHHhc------------cCC--C----CCCC--ccccchhhh
Q psy6851 823 SVMASAVLGPQLDIHTGGVDLKFPHHD--NELAQAEG------------LPT--H----DQEG--KELSKGLAK 874 (948)
Q Consensus 823 s~m~~~~lg~~~dih~GG~Dl~FPHH~--ne~aq~e~------------~~~--~----~~~g--~kmsKsl~n 874 (948)
.-||..+|=-..|+--||.|-.+ |.+ -|||+.-. +.. . ..+| +|||||.+|
T Consensus 127 vLQaaDil~~~~~~vpvG~DQ~~-~iel~Rdia~r~n~~yg~~f~~P~~li~~~~~~l~gl~G~~~KMSKS~~n 199 (328)
T 1i6k_A 127 PLMAADILLYNTDIVPVGEDQKQ-HIELTRDLAERFNKRYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPN 199 (328)
T ss_dssp HHHHHHHHTTTCSEEECCGGGHH-HHHHHHHHHHHHHHHHCSCCCCCEEECCSSSSSCBCSSCTTSBCCTTCSC
T ss_pred HHHHHHHHHhCCCEEecccchHH-HHHHHHHHHHHhCcccccccCCCeeeeccccccccCCCCCccCCCCCCCC
Confidence 45666666677888889999774 776 45665522 111 1 1567 899999999
No 79
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=43.38 E-value=4.6 Score=45.39 Aligned_cols=51 Identities=18% Similarity=0.071 Sum_probs=21.3
Q ss_pred HHHHhhcCCCceeecCCCCCCCCCChhHHHHHhccCC-CC----------CC-CccccchhhhH
Q psy6851 824 VMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLPT-HD----------QE-GKELSKGLAKK 875 (948)
Q Consensus 824 ~m~~~~lg~~~dih~GG~Dl~FPHH~ne~aq~e~~~~-~~----------~~-g~kmsKsl~n~ 875 (948)
.|+..++=-.+|+--||.|..+ |++--+--++.+.. .+ .+ |.|||||.+|.
T Consensus 173 lQaaD~l~~~~~~v~~G~DQ~~-~~~l~rdl~~r~~~~~p~~l~~pll~gl~~G~KMSKS~~ns 235 (394)
T 2dlc_X 173 MQALDEQFLDVDCQFGGVDQRK-IFVLAEENLPSLGYKKRAHLMNPMVPGLAQGGKMSASDPNS 235 (394)
T ss_dssp HHHHHHHHTTCSEEEEEGGGHH-HHHHHHHHGGGGTCCCCEEEEECCCCCCC----------CC
T ss_pred HhhccHhhhCCCEEecCccHHH-HHHHHHHHHHHcCCCCCEEEecccccCCCCCCcCCCCCCCC
Confidence 3444444456777778888753 55532222222211 11 56 99999999995
No 80
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=43.07 E-value=6.4 Score=43.45 Aligned_cols=52 Identities=19% Similarity=0.260 Sum_probs=34.7
Q ss_pred HHHHHhhcCCCceeecCCCCCCCCCCh--hHHHHHhc------------cCC-CC----CCCccccchhhhH
Q psy6851 823 SVMASAVLGPQLDIHTGGVDLKFPHHD--NELAQAEG------------LPT-HD----QEGKELSKGLAKK 875 (948)
Q Consensus 823 s~m~~~~lg~~~dih~GG~Dl~FPHH~--ne~aq~e~------------~~~-~~----~~g~kmsKsl~n~ 875 (948)
.-||..+|=-..|+--||.|=.. |.+ -|+|+.-. +.. .+ .+|.|||||.+|.
T Consensus 143 vLQAaDil~~~~~~vpvG~DQ~~-hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~gldG~KMSKS~~n~ 213 (340)
T 2g36_A 143 VLQAADILIYKAEGVPVGEDQVY-HIELTREIARRFNYLYDEVFPEPEAILSRVPKLPGTDGRKMSKSYGNI 213 (340)
T ss_dssp HHHHHHHHTTTCSEEEECGGGHH-HHHHHHHHHHHHHHHSCCCCCCCEEEECCSCCCCCTTSSCCCGGGTCC
T ss_pred HHHHhhHHHhCCCEEEcccchHH-HHHHHHHHHHHhhhhcccccCCchhhhccccccCCCCccccCCCCCCe
Confidence 34566666567788888999764 766 56666421 111 11 6799999999997
No 81
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=42.95 E-value=1.1e+02 Score=33.63 Aligned_cols=16 Identities=13% Similarity=0.150 Sum_probs=12.7
Q ss_pred Eccc-chhhcchhHHHH
Q psy6851 245 VHLS-QKQQSLKLVVIM 260 (948)
Q Consensus 245 i~ge-KMSKSLGN~vti 260 (948)
++|. |||||.+|.|.+
T Consensus 210 ldG~~KMSKS~~n~I~L 226 (351)
T 1yi8_B 210 LDGQAKMSKSLGNAIAL 226 (351)
T ss_dssp TTSSSCCCTTTTCCCBT
T ss_pred CCCccccCCCCCCeecC
Confidence 4787 999999996543
No 82
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=35.29 E-value=7.7 Score=43.24 Aligned_cols=24 Identities=8% Similarity=0.173 Sum_probs=18.3
Q ss_pred CCcceEEehhHHHHHhhhcCCeEEEe
Q psy6851 432 EGKSYITFDILRRILSEYFNYNITYA 457 (948)
Q Consensus 432 hARTyVsfDilrR~l~~y~gy~v~~v 457 (948)
|-+.|+.+-.+++.++ .|+++.+.
T Consensus 49 HlG~~~~~l~~~~~~q--~g~~~i~~ 72 (372)
T 1n3l_A 49 HVAYFVPMSKIADFLK--AGCEVTIL 72 (372)
T ss_dssp BGGGHHHHHHHHHHHH--TTCEEEEE
T ss_pred cHHHHHHHHHHHHHHH--CCCCEEEE
Confidence 8888888877777776 58887665
No 83
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=33.88 E-value=12 Score=41.29 Aligned_cols=51 Identities=25% Similarity=0.302 Sum_probs=32.8
Q ss_pred HHHHhhcCCCceeecCCCCCCCCCCh--hHHHHHh----c--c------CCC--C----CCC-ccccchhhhH
Q psy6851 824 VMASAVLGPQLDIHTGGVDLKFPHHD--NELAQAE----G--L------PTH--D----QEG-KELSKGLAKK 875 (948)
Q Consensus 824 ~m~~~~lg~~~dih~GG~Dl~FPHH~--ne~aq~e----~--~------~~~--~----~~g-~kmsKsl~n~ 875 (948)
-||..+|=-..|+--||.|=.+ |.+ -|+|+.- + + ... + .+| +|||||.+|.
T Consensus 132 LQaaDil~~~~~lvp~G~DQ~~-~i~l~rdla~r~n~~~g~~f~~P~~~~~~~~p~l~gldG~~KMSKS~~n~ 203 (337)
T 2el7_A 132 LQAADILIYKADTVPVGEDQVQ-HIELTREIARRFNHLFGETFPEPQALLNPEAPRVPGIDGKAKMSKSLGNT 203 (337)
T ss_dssp HHHHHHHHTTCCEEECCGGGCH-HHHHHHHHHHHHHHHHSSCCCCCEEECCTTSCCCBCTTSSSBCCTTTTCC
T ss_pred HHHhhHHhhCCcEEEcccchHH-HHHHHHHHHHHHHhhcCcccCCCeeecccccccccCCCCccccCCCCCCe
Confidence 3444544456788888999764 776 4666531 1 1 111 2 678 9999999996
No 84
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=33.84 E-value=11 Score=42.00 Aligned_cols=52 Identities=17% Similarity=0.252 Sum_probs=33.0
Q ss_pred HHHHHhhcCCCceeecCCCCCCCCCCh--hHHHHHhccCCC------C----C-CC-ccccchhh-hH
Q psy6851 823 SVMASAVLGPQLDIHTGGVDLKFPHHD--NELAQAEGLPTH------D----Q-EG-KELSKGLA-KK 875 (948)
Q Consensus 823 s~m~~~~lg~~~dih~GG~Dl~FPHH~--ne~aq~e~~~~~------~----~-~g-~kmsKsl~-n~ 875 (948)
.-||..+|--..|+--||.|=. ||++ -|+|+.-...-. + . +| .|||||.+ |.
T Consensus 190 lLQaaDil~l~ad~vpgG~DQ~-~~l~l~Rdla~r~~~~~~~~~l~~p~l~gL~dG~~KMSKS~~~~~ 256 (373)
T 3vgj_A 190 CMQCADIFFLNVDICQLGIDQR-KVNMLAREYCDIKKIKKKPVILSHGMLPGLLEGQEKMSKSDENSA 256 (373)
T ss_dssp HHHHHHHHHTTCSEECCBGGGH-HHHHHHHHHHHHHTCSCCCEEEEBCCCCCSSTTCCSCCSSSTTCC
T ss_pred HHHHhcccccCCcEEEcchhhH-HHHHHHHHHHHHhCCCCCceEEeCCeeecCCCCCCCCcCCCCCCe
Confidence 3456565555678888999966 5665 466665432211 1 3 77 49999995 44
No 85
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=32.31 E-value=4.8 Score=43.86 Aligned_cols=15 Identities=7% Similarity=-0.097 Sum_probs=12.7
Q ss_pred EEcccchhhcchhHH
Q psy6851 244 RVHLSQKQQSLKLVV 258 (948)
Q Consensus 244 ~i~geKMSKSLGN~v 258 (948)
.++|.|||||.||.|
T Consensus 209 ~l~G~KMSKS~~n~I 223 (323)
T 2cyb_A 209 GLDGQKMSSSKGNYI 223 (323)
T ss_dssp CTTSSBCCTTTTCSC
T ss_pred CCCCCcccCCcCcee
Confidence 357999999999975
No 86
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=31.66 E-value=13 Score=41.13 Aligned_cols=52 Identities=31% Similarity=0.230 Sum_probs=36.2
Q ss_pred HHHHHHhhcCCCceeecCCCCCCCCCCh--hHHHHHhc--c---CCCC-------------CCC--ccccchhhh
Q psy6851 822 CSVMASAVLGPQLDIHTGGVDLKFPHHD--NELAQAEG--L---PTHD-------------QEG--KELSKGLAK 874 (948)
Q Consensus 822 Cs~m~~~~lg~~~dih~GG~Dl~FPHH~--ne~aq~e~--~---~~~~-------------~~g--~kmsKsl~n 874 (948)
-.-||..+|=-..|+--||.|-.+ |++ -|+|+.-. | +..+ .+| +|||||.+|
T Consensus 136 PvLQaaDil~~~a~~vpvG~DQ~~-~lel~Rdia~r~n~~yg~~f~~P~~l~~~~~~~l~gL~g~~~KMSKS~~n 209 (348)
T 2yy5_A 136 PALMAGDILLYQPDIVPVGNDQKQ-HLELTRDLAQRIQKKFKLKLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKN 209 (348)
T ss_dssp HHHHHHHHHTTCCSEEECCGGGHH-HHHHHHHHHHHHHHHHCCCCCCCEEECCTTTTTCBCSSCTTSBCCSSCSC
T ss_pred HHHHHHHHHHhCccEEEecccHHH-HHHHHHHHHHHhhhhcccccCCCeeecccccccccCCCCcchhcCCCCCC
Confidence 346777777778899999999875 776 45665531 0 1111 467 899999999
No 87
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=29.24 E-value=13 Score=41.29 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=17.7
Q ss_pred HHHHHhhcCCCceeecCCCCCCCCCCh
Q psy6851 823 SVMASAVLGPQLDIHTGGVDLKFPHHD 849 (948)
Q Consensus 823 s~m~~~~lg~~~dih~GG~Dl~FPHH~ 849 (948)
.-||..+|=-..|+-.||.|-. ||++
T Consensus 167 ~LQaaDil~~~~~~v~~G~DQ~-~~~~ 192 (364)
T 2cya_A 167 LMQVSDIFYMDLDIALGGMDQR-KAHM 192 (364)
T ss_dssp HHHHHHHHHTTCSEEEEEGGGH-HHHH
T ss_pred HHHHhhHHhcCCCEEeccchHH-HHHH
Confidence 3455566556788888999976 4555
No 88
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=27.45 E-value=5.8 Score=43.79 Aligned_cols=17 Identities=6% Similarity=0.063 Sum_probs=13.6
Q ss_pred EcccchhhcchhHHHHH
Q psy6851 245 VHLSQKQQSLKLVVIMK 261 (948)
Q Consensus 245 i~geKMSKSLGN~vti~ 261 (948)
++|.|||||.+|.|.+.
T Consensus 201 ldG~KMSKS~~n~I~L~ 217 (340)
T 2g36_A 201 TDGRKMSKSYGNIINLE 217 (340)
T ss_dssp TTSSCCCGGGTCCCBTT
T ss_pred CCccccCCCCCCeEeee
Confidence 47899999999976443
No 89
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=27.36 E-value=20 Score=39.69 Aligned_cols=53 Identities=23% Similarity=0.177 Sum_probs=37.3
Q ss_pred HHHHHHHhhcCCCceeecCCCCCCCCCCh--hHHHHHhc------------cCC---CC---C-CC-ccccchhhh
Q psy6851 821 ECSVMASAVLGPQLDIHTGGVDLKFPHHD--NELAQAEG------------LPT---HD---Q-EG-KELSKGLAK 874 (948)
Q Consensus 821 eCs~m~~~~lg~~~dih~GG~Dl~FPHH~--ne~aq~e~------------~~~---~~---~-~g-~kmsKsl~n 874 (948)
=..-||..+|--.-|+--||.|=. ||++ .|+|+.-. +.. .. . +| .|||||.+|
T Consensus 140 YP~lQAaDil~~~ad~vpvG~DQ~-~hleltRdia~rfn~~yg~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~ 214 (346)
T 3n9i_A 140 YPVLMAADILLYQTNQVPVGEDQK-QHLELSRDIASRFNNLYGDIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDN 214 (346)
T ss_dssp HHHHHHHHHHTTTCSEECCCGGGH-HHHHHHHHHHHHHHHHHSSCSCCCEECCCCCCCCCBCSSCTTSBCCTTCSC
T ss_pred hHHHHHHHHHHhCceEEEeccchH-HHHHHHHHHHHHhccccCCcccccchhccCCcccCccCCCCccccCCCCCC
Confidence 345678888877889999999977 6887 58887543 111 01 2 67 599999974
No 90
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=25.65 E-value=20 Score=39.62 Aligned_cols=42 Identities=29% Similarity=0.332 Sum_probs=26.0
Q ss_pred CceeecCCCCCCCCCCh--hHHHHHhccC-----CCC----C-CC-ccccchhh-hH
Q psy6851 833 QLDIHTGGVDLKFPHHD--NELAQAEGLP-----THD----Q-EG-KELSKGLA-KK 875 (948)
Q Consensus 833 ~~dih~GG~Dl~FPHH~--ne~aq~e~~~-----~~~----~-~g-~kmsKsl~-n~ 875 (948)
..|+--||.|=. ||++ -|+|+.-.+. ..+ . +| .|||||.+ |.
T Consensus 186 ~~~~~~~G~DQ~-~~i~l~Rdia~r~~~~~p~~~~~~~l~gL~dg~~KMSKS~~~~~ 241 (348)
T 2j5b_A 186 GIDICQLGIDQR-KVNMLAIEYANDRGLKIPISLSHHMLMSLSGPKKKMSKSDPQGA 241 (348)
T ss_dssp CCSEECCBGGGH-HHHHHHHHHHHHTTCCCCEEEEBCCCCCTTCSSCCCSTTCGGGS
T ss_pred CCcEEEeccChH-HHHHHHHHHHHHhCCCCceeecCccccCCCCcccccccCCCCCe
Confidence 677788888876 6665 4555442211 001 3 67 79999994 54
No 91
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=25.63 E-value=27 Score=39.40 Aligned_cols=52 Identities=25% Similarity=0.206 Sum_probs=36.2
Q ss_pred HHHHHhhcCCCceeecCCCCCCCCCCh--hHHHHHhcc-CC----CC-------------C-CC-ccccchh---hhH
Q psy6851 823 SVMASAVLGPQLDIHTGGVDLKFPHHD--NELAQAEGL-PT----HD-------------Q-EG-KELSKGL---AKK 875 (948)
Q Consensus 823 s~m~~~~lg~~~dih~GG~Dl~FPHH~--ne~aq~e~~-~~----~~-------------~-~g-~kmsKsl---~n~ 875 (948)
.-||..+|=-.-|+--||.|=. ||++ .|||+.-.. ++ .+ . +| .|||||. +|.
T Consensus 161 vLQAADIl~~~ad~vPvG~DQ~-~hleltRdia~rfn~~y~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~ 237 (388)
T 3prh_A 161 PLMAADILLYGTDLVPPGEDQK-QHLELTRNLAERFNKKYNDIFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAY 237 (388)
T ss_dssp HHHHHHHHTTTCCEECCCSSCH-HHHHHHHHHHHHHHHHTCSCCCCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSC
T ss_pred HHHHHHHHHhCCCEEEechhHH-HHHHHHHHHHHHhCcccCCCcccchhhhcccccccccCCCCCCccCCCCCCCCCe
Confidence 4677787777889999999976 6776 577775431 11 01 2 44 7999999 776
No 92
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=25.60 E-value=16 Score=41.09 Aligned_cols=25 Identities=8% Similarity=-0.083 Sum_probs=16.6
Q ss_pred CCcceEEehhHHHHHhhhcCCeEEEec
Q psy6851 432 EGKSYITFDILRRILSEYFNYNITYAM 458 (948)
Q Consensus 432 hARTyVsfDilrR~l~~y~gy~v~~v~ 458 (948)
|-+.||.+-.+++. ++ .||++.+++
T Consensus 79 HlGhlv~l~~l~~l-Q~-~G~~~~~lI 103 (392)
T 1y42_X 79 HVGHLLPLMPLFWM-YL-EGYKAFTLI 103 (392)
T ss_dssp BGGGHHHHHHHHHH-HH-HTCEEEEEE
T ss_pred cHHHHHHHHHHHHH-HH-cCCcEEEEE
Confidence 87888876666544 43 488876653
No 93
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=25.53 E-value=12 Score=41.58 Aligned_cols=16 Identities=13% Similarity=-0.108 Sum_probs=1.7
Q ss_pred EEcccchhhcchhHHH
Q psy6851 244 RVHLSQKQQSLKLVVI 259 (948)
Q Consensus 244 ~i~geKMSKSLGN~vt 259 (948)
.++|.|||||.||.|.
T Consensus 249 ~ldG~KMSKS~~naI~ 264 (356)
T 2pid_A 249 STTGAKLGKSAGNAVW 264 (356)
T ss_dssp -------------CCB
T ss_pred CCCcccccCCCCCeee
Confidence 3589999999999763
No 94
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=25.16 E-value=16 Score=41.15 Aligned_cols=29 Identities=17% Similarity=0.259 Sum_probs=21.6
Q ss_pred CCcceEEehhHHHHHhhhcCCeEEEecccccc
Q psy6851 432 EGKSYITFDILRRILSEYFNYNITYAMNITDI 463 (948)
Q Consensus 432 hARTyVsfDilrR~l~~y~gy~v~~v~NiTDi 463 (948)
|-+.||.+-.+++ |++.+|..|.+ =|+|.
T Consensus 89 HlGh~v~~~~~~~-lQ~~~~~~v~i--~I~D~ 117 (393)
T 3hv0_A 89 HVGHLVPFLFTKY-LQDTFKVPLVI--QLTDD 117 (393)
T ss_dssp BSTTHHHHHHHHH-HHHHHCCCEEE--EECHH
T ss_pred cHHHHHHHHHHHH-HHHhcCCCeEe--eccCh
Confidence 8888988887766 88888877666 35654
No 95
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=24.32 E-value=13 Score=40.75 Aligned_cols=16 Identities=6% Similarity=0.031 Sum_probs=13.3
Q ss_pred EcccchhhcchhHHHH
Q psy6851 245 VHLSQKQQSLKLVVIM 260 (948)
Q Consensus 245 i~geKMSKSLGN~vti 260 (948)
++|.|||||.+|.|.+
T Consensus 188 l~G~KMSKS~~n~I~L 203 (322)
T 3tzl_A 188 TDGAKMSKSYQNTIDI 203 (322)
T ss_dssp TTSSBCCGGGTCCCBS
T ss_pred CCCCcCCCCCCCceec
Confidence 5789999999997644
No 96
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=23.96 E-value=18 Score=40.35 Aligned_cols=32 Identities=22% Similarity=0.295 Sum_probs=21.6
Q ss_pred HHHHHhhcCCCceeecCCCCCCCCCCh--hHHHHH
Q psy6851 823 SVMASAVLGPQLDIHTGGVDLKFPHHD--NELAQA 855 (948)
Q Consensus 823 s~m~~~~lg~~~dih~GG~Dl~FPHH~--ne~aq~ 855 (948)
.-||..+|=-..|+-.||.|=. ||++ -|+|+-
T Consensus 170 ~LQaaDil~~~~~~vp~G~DQ~-~~i~l~rdla~r 203 (375)
T 2cyc_A 170 MMQVADIFYQGVTIAHAGMDQR-KAHVIAIEVAQK 203 (375)
T ss_dssp HHHHHHHHHTTCSEEEEEGGGH-HHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCCeecccchHH-HHHHHHHHHHHH
Confidence 3466666656778888999977 7777 355543
No 97
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=22.57 E-value=15 Score=40.06 Aligned_cols=15 Identities=7% Similarity=-0.192 Sum_probs=12.6
Q ss_pred EcccchhhcchhHHH
Q psy6851 245 VHLSQKQQSLKLVVI 259 (948)
Q Consensus 245 i~geKMSKSLGN~vt 259 (948)
++|.|||||.+|.|.
T Consensus 231 ldG~KMSKS~~n~I~ 245 (322)
T 2yxn_A 231 ADGTKFGKTEGGAVW 245 (322)
T ss_dssp TTSCBTTEETTEECB
T ss_pred CCcccccCCCCCeee
Confidence 478999999999663
No 98
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=22.44 E-value=28 Score=39.28 Aligned_cols=50 Identities=10% Similarity=0.159 Sum_probs=30.8
Q ss_pred HHHHHhhcCC-CceeecCCCCCCCCCCh--hHHHHHhccCCCC----------CCC--ccccchhhh
Q psy6851 823 SVMASAVLGP-QLDIHTGGVDLKFPHHD--NELAQAEGLPTHD----------QEG--KELSKGLAK 874 (948)
Q Consensus 823 s~m~~~~lg~-~~dih~GG~Dl~FPHH~--ne~aq~e~~~~~~----------~~g--~kmsKsl~n 874 (948)
..||..+|-- .-|+=-||.|=. ||++ -|+|+--.+. .+ .+| .|||||.+|
T Consensus 196 ~LQaaDil~~~~a~~vpvG~DQ~-~hl~l~Rdla~r~n~~-~p~~l~~~~l~gLdG~~~KMSKS~~n 260 (392)
T 3jxe_A 196 AIQIAPTFFERKRCLIPAAIDQD-PYWRLQRDFAESLGYY-KTAALHSKFVPSLTSLSGKMSASKPE 260 (392)
T ss_dssp HHHHGGGGSSSSCEEEEEEGGGH-HHHHHHHHHTGGGTSC-CCEEEEECCCCCSSCSSSCCCTTSGG
T ss_pred HHHHhhHHhhcCCceeecccchH-HHHHHHHHHHHHcCCC-CCeeeecccccCCCCCccccccCCCC
Confidence 4456665544 245556888866 6776 3555543321 11 567 699999999
No 99
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=20.20 E-value=25 Score=38.94 Aligned_cols=13 Identities=31% Similarity=0.613 Sum_probs=11.4
Q ss_pred CCCc-cccchhhhH
Q psy6851 863 QEGK-ELSKGLAKK 875 (948)
Q Consensus 863 ~~g~-kmsKsl~n~ 875 (948)
.+|. |||||.+|.
T Consensus 210 ldG~~KMSKS~~n~ 223 (351)
T 1yi8_B 210 LDGQAKMSKSLGNA 223 (351)
T ss_dssp TTSSSCCCTTTTCC
T ss_pred CCCccccCCCCCCe
Confidence 5786 999999996
No 100
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=20.06 E-value=20 Score=40.37 Aligned_cols=16 Identities=6% Similarity=-0.095 Sum_probs=13.2
Q ss_pred EcccchhhcchhHHHH
Q psy6851 245 VHLSQKQQSLKLVVIM 260 (948)
Q Consensus 245 i~geKMSKSLGN~vti 260 (948)
++|.|||||.||.|.+
T Consensus 289 ldG~KMSKS~~naI~L 304 (392)
T 1y42_X 289 SSGAKFGKSAGNAIWL 304 (392)
T ss_dssp TTCCBTTBCSSSBCBS
T ss_pred CchhhccCCCCCeeec
Confidence 5899999999997643
Done!