RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6851
(948 letters)
>gnl|CDD|234705 PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.
Length = 463
Score = 169 bits (430), Expect = 5e-45
Identities = 49/75 (65%), Positives = 56/75 (74%)
Query: 784 EASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDL 843
A EKR P DFALWK +K GEP W SPWG+GRPGWHIECS M++ LG DIH GG DL
Sbjct: 171 VAEEKRDPLDFALWKAAKPGEPSWESPWGKGRPGWHIECSAMSTKYLGETFDIHGGGADL 230
Query: 844 KFPHHDNELAQAEGL 858
FPHH+NE+AQ+E
Sbjct: 231 IFPHHENEIAQSEAA 245
Score = 77.1 bits (191), Expect = 1e-14
Identities = 24/42 (57%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQN 474
+S++ FD+LRR L Y Y +TY NITDIDDKIIKRA +
Sbjct: 42 ARSFVVFDVLRRYL-RYLGYKVTYVRNITDIDDKIIKRANEE 82
Score = 72.8 bits (180), Expect = 3e-13
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 21/95 (22%)
Query: 85 LAAAQEAKEAQKKIPPSEMFKMETDKY-SQFDET-----VLPPTVLTRVSEYIPEIVASY 138
+ A E E+ K++ T++Y + F E VLPP + R +E+IPEI+
Sbjct: 76 IKRANEEGESIKEL---------TERYIAAFHEDMDALNVLPPDIEPRATEHIPEIIE-L 125
Query: 139 IEKIIANGLAYESNGSVYFNVNAFDSQPNHYYAKL 173
IE++I G AYE++G VYF+V F Y KL
Sbjct: 126 IERLIDKGHAYEADGDVYFDVRKFPD-----YGKL 155
Score = 52.4 bits (127), Expect = 8e-07
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 627 LPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVA 662
L + + A FH+DM LNVLPP + R +E+IPEI+
Sbjct: 89 LTERYIAAFHEDMDALNVLPPDIEPRATEHIPEIIE 124
Score = 41.2 bits (98), Expect = 0.002
Identities = 32/166 (19%), Positives = 52/166 (31%), Gaps = 33/166 (19%)
Query: 269 DHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQ 328
+ + N E E RFI A+ D+ +T AL + + +
Sbjct: 317 ERLYNALAETALGEDDEALLAELEEFKERFI-------EAMDDDFNTPEALAVLFELARE 369
Query: 329 VNIYLRGTPNQLLLRDIGAYVTKILTVFGCIGDVKNIGFPLGGTGVESTNLEELVLPYLT 388
+N L + + V G + + F + +E L+
Sbjct: 370 INRALETKDKEAAAALAALLR-ALADVLG-LEQDEEALFEAAADELLDAEIEALI----- 422
Query: 389 ILSEFRDNIRTEARLIK----STEILNQCDRLRDEVLPNVGVRLED 430
R EAR K + D +RDE L +G+ LED
Sbjct: 423 -------EERQEARKAKDFALA-------DAIRDE-LAALGIVLED 453
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 171 bits (435), Expect = 2e-44
Identities = 59/86 (68%), Positives = 66/86 (76%), Gaps = 1/86 (1%)
Query: 778 GDLSSQEASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIH 837
G L + EKRSPNDFALWK SK GEP W SPWG+GRPGWHIECS MAS +LG +DIH
Sbjct: 214 GALGKV-SGEKRSPNDFALWKASKPGEPSWDSPWGKGRPGWHIECSAMASNILGDPIDIH 272
Query: 838 TGGVDLKFPHHDNELAQAEGLPTHDQ 863
+GG+DLKFPHHDNELAQ+E Q
Sbjct: 273 SGGIDLKFPHHDNELAQSEAYFDKHQ 298
Score = 149 bits (378), Expect = 3e-37
Identities = 70/186 (37%), Positives = 96/186 (51%), Gaps = 21/186 (11%)
Query: 262 EFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDS 321
FF NVK +R ++S +KWTQ D EL+ F +TK+ VHAAL DN DT AL +
Sbjct: 370 NFFANVKIKLRES-----ELTSPQKWTQHDFELNELFEETKSAVHAALLDNFDTPEALQA 424
Query: 322 IRDCISQVNIYLRG--TPNQLLLRDIGAYVTKILTVFGCIGDVKNIGFPLGGTGVESTNL 379
++ IS N YL P+ LLR + YVTKIL++FG + +G +
Sbjct: 425 LQKLISATNTYLNSGEQPSAPLLRSVAQYVTKILSIFGLVEGSDGLGSQ------GQNST 478
Query: 380 EELVLPYLTILSEFRDNIRTEARLI--------KSTEILNQCDRLRDEVLPNVGVRLEDI 431
E P L L FRD +R A+ K ++L CD+LRDE LPN+G+R+ED
Sbjct: 479 SENFKPLLEALLRFRDEVRDAAKAEMKLISLDKKKKQLLQLCDKLRDEWLPNLGIRIEDK 538
Query: 432 EGKSYI 437
+
Sbjct: 539 PDGPSV 544
Score = 107 bits (268), Expect = 1e-23
Identities = 43/71 (60%), Positives = 51/71 (71%), Gaps = 2/71 (2%)
Query: 118 VLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPNHYYAKLVPEA 177
V PP V+TRVSEY+PEIV +I+KII NG AYESNGSVYF+V AF + H Y KL PE+
Sbjct: 145 VRPPDVITRVSEYVPEIV-DFIQKIIDNGFAYESNGSVYFDVEAF-RKAGHVYPKLEPES 202
Query: 178 YGDTKTLQEGE 188
D + EGE
Sbjct: 203 VADEDRIAEGE 213
Score = 86.2 bits (214), Expect = 3e-17
Identities = 31/54 (57%), Positives = 42/54 (77%), Gaps = 2/54 (3%)
Query: 434 KSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYL--FEKHVQENE 485
++Y+TFDI+RRIL +YF Y++ Y MNITDIDDKIIKRAR+ L F + ++ E
Sbjct: 80 RTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREEKLSIFLELARKWE 133
Score = 78.1 bits (193), Expect = 9e-15
Identities = 34/72 (47%), Positives = 43/72 (59%)
Query: 49 PSAVKLVDKETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKKIPPSEMFKMET 108
PS KL DKE L +EKE K + +K K +K+ E + K + KIPP+E FK +
Sbjct: 542 PSVWKLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAKIPPAEFFKRQE 601
Query: 109 DKYSQFDETVLP 120
DKYS FDET LP
Sbjct: 602 DKYSAFDETGLP 613
Score = 69.3 bits (170), Expect = 5e-12
Identities = 27/45 (60%), Positives = 31/45 (68%)
Query: 622 SIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQT 666
SIF L + WE EF +DM LNV PP V+TRVSEY+PEIV Q
Sbjct: 123 SIFLELARKWEKEFFEDMKALNVRPPDVITRVSEYVPEIVDFIQK 167
Score = 44.2 bits (105), Expect = 3e-04
Identities = 32/103 (31%), Positives = 43/103 (41%), Gaps = 25/103 (24%)
Query: 851 ELAQAEGLPTHDQEGKELSKGLAKKLKKLQL-------TQEKKYNEYIASVQKATLHGLL 903
Q QE K+ K +KL+K ++ QE KY+
Sbjct: 563 LKEQKRLRKLKKQEEKK--KKELEKLEKAKIPPAEFFKRQEDKYSA-------------- 606
Query: 904 VCFCFQGLPTHDQEGKELSKGLAKKLKKLQLTQEKKYNEYIAS 946
F GLPTHD +G+E+SK KKL K Q K + EY+A
Sbjct: 607 --FDETGLPTHDADGEEISKKERKKLSKEYDKQAKLHEEYLAK 647
Score = 43.9 bits (104), Expect = 4e-04
Identities = 20/40 (50%), Positives = 25/40 (62%)
Query: 857 GLPTHDQEGKELSKGLAKKLKKLQLTQEKKYNEYIASVQK 896
GLPTHD +G+E+SK KKL K Q K + EY+A K
Sbjct: 611 GLPTHDADGEEISKKERKKLSKEYDKQAKLHEEYLAKGGK 650
>gnl|CDD|223293 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 464
Score = 163 bits (415), Expect = 4e-43
Identities = 47/76 (61%), Positives = 56/76 (73%)
Query: 783 QEASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVD 842
+ EKR+P DF LWK +K GEP W SPWG+GRPGWHIECS M++ LG DIH GG D
Sbjct: 171 EVDEEKRNPLDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMSTKYLGETFDIHGGGSD 230
Query: 843 LKFPHHDNELAQAEGL 858
L FPHH+NE+AQ+E
Sbjct: 231 LIFPHHENEIAQSEAA 246
Score = 77.7 bits (192), Expect = 8e-15
Identities = 28/55 (50%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQ 487
++Y+ FD+LRR L Y Y +TY NITDIDDKII RAR+ L + V E I
Sbjct: 41 ARTYVVFDVLRRYL-RYLGYKVTYVRNITDIDDKIINRAREEGLSIREVAERYIA 94
Score = 68.8 bits (169), Expect = 5e-12
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 23/102 (22%)
Query: 73 EKAAEKERKKAELAAAQEAKEAQKKIPPSEMFKMETDKYSQFDETVLPPTVLTRVSEYIP 132
+A E+ E+A A F+ D + VLPP + R +E+I
Sbjct: 76 NRAREEGLSIREVAERYIA----------AFFED-MDALN-----VLPPDIEPRATEHID 119
Query: 133 EIVASYIEKIIANGLAYES-NGSVYFNVNAFDSQPNHYYAKL 173
EI+ +IEK+I G AY + +G VYF+V+ F Y KL
Sbjct: 120 EIIE-FIEKLIEKGYAYVADDGDVYFDVSKFKD-----YGKL 155
Score = 56.5 bits (137), Expect = 4e-08
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 620 DNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVA 662
+ + + + A F +DM LNVLPP + R +E+I EI+
Sbjct: 81 EGLSIREVAERYIAAFFEDMDALNVLPPDIEPRATEHIDEIIE 123
Score = 51.1 bits (123), Expect = 2e-06
Identities = 27/133 (20%), Positives = 51/133 (38%), Gaps = 18/133 (13%)
Query: 298 FIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGTPNQLLLRDIGAYVTKILTVFG 357
+ + AL D+ +T AL + + ++N L + + + + + +L + G
Sbjct: 340 LKEFEARFREALDDDFNTPKALAVLFELAKEINRLLEEGKS--DAKAVLSALKALLAILG 397
Query: 358 CIGDVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLR 417
+K +G E + +E + L E R R + D +R
Sbjct: 398 ----LKVLGLFPQSGAQEDESDDEEIE----ALIEERLEARKA-------KNWALADEIR 442
Query: 418 DEVLPNVGVRLED 430
DE L +G+ LED
Sbjct: 443 DE-LLALGIILED 454
>gnl|CDD|216482 pfam01406, tRNA-synt_1e, tRNA synthetases class I (C) catalytic
domain. This family includes only cysteinyl tRNA
synthetases.
Length = 301
Score = 149 bits (377), Expect = 1e-39
Identities = 54/77 (70%), Positives = 60/77 (77%), Gaps = 2/77 (2%)
Query: 788 KRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPH 847
KR P DFALWK SK GEP W SPWG+GRPGWHIECS MA LG Q+DIH GGVDLKFPH
Sbjct: 162 KRDPLDFALWKASKEGEPSWDSPWGKGRPGWHIECSAMARKYLGSQIDIHGGGVDLKFPH 221
Query: 848 HDNELAQAEGLPTHDQE 864
H+NE+AQ+E DQ+
Sbjct: 222 HENEIAQSEAA--FDQQ 236
Score = 78.2 bits (193), Expect = 2e-15
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQ 487
+S + FD+LRR L + Y++ + N TDIDDKIIKRA+Q + + I
Sbjct: 28 ARSAVAFDVLRRYL-QALGYDVQFVQNFTDIDDKIIKRAQQQGESFRELAARFIT 81
Score = 67.7 bits (166), Expect = 4e-12
Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 12/107 (11%)
Query: 85 LAAAQEAKEAQKKIPPSEMFKMETDKYSQFDE-TVLPPTVLTRVSEYIPEIVASYIEKII 143
+ AQ+ E+ +++ + T D VLPP + RV+E+I EI+ +IE++I
Sbjct: 62 IKRAQQQGESFRELAA----RFITAYTKDMDALNVLPPDLEPRVTEHIDEII-EFIERLI 116
Query: 144 ANGLAYES-NGSVYFNVNAFDSQPNHYYAKLVPEAYGDTKTLQEGEV 189
G AY S NG VYF+V++F Y KL + + GEV
Sbjct: 117 KKGYAYVSDNGDVYFDVSSF-----PDYGKLSGQNLEQLEAGARGEV 158
Score = 57.0 bits (138), Expect = 2e-08
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 624 FATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIV 661
F L + + KDM LNVLPP + RV+E+I EI+
Sbjct: 72 FRELAARFITAYTKDMDALNVLPPDLEPRVTEHIDEII 109
>gnl|CDD|232974 TIGR00435, cysS, cysteinyl-tRNA synthetase. This model finds the
cysteinyl-tRNA synthetase from most but not from all
species. The enzyme from one archaeal species,
Archaeoglobus fulgidus, is found but the equivalent
enzymes from some other Archaea, including Methanococcus
jannaschii, are not found, although biochemical evidence
suggests that tRNA(Cys) in these species are charged
directly with Cys rather than through a misacylation and
correction pathway as for tRNA(Gln) [Protein synthesis,
tRNA aminoacylation].
Length = 464
Score = 139 bits (353), Expect = 4e-35
Identities = 48/77 (62%), Positives = 56/77 (72%), Gaps = 2/77 (2%)
Query: 788 KRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPH 847
KR+ DF LWK SK GEP W SPWG+GRPGWHIECS M LG Q+DIH GGVDL FPH
Sbjct: 174 KRNKLDFVLWKSSKEGEPKWDSPWGKGRPGWHIECSAMNDKYLGDQIDIHGGGVDLIFPH 233
Query: 848 HDNELAQAEGLPTHDQE 864
H+NE+AQ+E ++
Sbjct: 234 HENEIAQSEAA--FGKQ 248
Score = 77.0 bits (190), Expect = 1e-14
Identities = 28/55 (50%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQ 487
++ I FD+LRR L Y Y + Y NITDIDDKIIKRAR+N V E I+
Sbjct: 40 ARTAIVFDVLRRYL-RYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIE 93
Score = 68.2 bits (167), Expect = 1e-11
Identities = 84/391 (21%), Positives = 137/391 (35%), Gaps = 117/391 (29%)
Query: 118 VLPPTVLTRVSEYIPEIVASYIEKIIANGLAYES-NGSVYFNVNAFDSQPNHYYAKL--- 173
VLPP + R +E+I EI+ +IE++I G AY S NG VYF+V+ F Y KL
Sbjct: 104 VLPPDLEPRATEHIDEII-EFIEQLIEKGYAYVSDNGDVYFDVSKFKD-----YGKLSKQ 157
Query: 174 ------------VPEAYGDT------KTLQEGEV-------RGYPPWPARIEGLADETPN 208
V EA + K+ +EGE +G P W + D+
Sbjct: 158 DLDQLEAGARVDVDEAKRNKLDFVLWKSSKEGEPKWDSPWGKGRPGWHIECSAMNDKY-- 215
Query: 209 RLKYHIFFYGTRETGICRQDELFPYTE---------FKDKYGKVRVH----------LSQ 249
L I +G D +FP+ E F + K +H +S+
Sbjct: 216 -LGDQIDIHGG------GVDLIFPHHENEIAQSEAAFGKQLAKYWMHNGFLMIDNEKMSK 268
Query: 250 KQQSLKLVV---------IMKEFFLNVKDHIRN-LKFP--------------ATTVSSFE 285
+ V I++ F L+V H R+ L F + +
Sbjct: 269 SLGNFFTVRDVLKNYDPEILRYFLLSV--HYRSPLDFSEELLEAAKNALERLYKALRVLD 326
Query: 286 KWTQADLELSTRFIQTKNNVHA----ALCDNMDTRSALDSIRDCISQVNIYLRGTPNQLL 341
S + A A+ D+++T +AL + + +N+ + L
Sbjct: 327 TSLAYSGNQSLNKFPDEKEFEARFVEAMDDDLNTANALAVLFELAKSINLTFVSKADAAL 386
Query: 342 LRDIGAYVTKILTVFGCIGDVKNIGFPLGGTGV--ESTNLEELVLPYLTILSEFRDNIRT 399
L ++ + +G + + G + +E L+ R+
Sbjct: 387 LI------EHLIFLESRLGLLLGLPSKPVQAGSNDDLGEIEALIEE------------RS 428
Query: 400 EARLIKSTEILNQCDRLRDEVLPNVGVRLED 430
AR K + D +RDE L G+ LED
Sbjct: 429 IARKEKD---FAKADEIRDE-LAKKGIVLED 455
Score = 43.5 bits (103), Expect = 4e-04
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 633 AEFHKDMADLNVLPPTVLTRVSEYIPEIV 661
+ +DM LNVLPP + R +E+I EI+
Sbjct: 93 EAYFEDMKALNVLPPDLEPRATEHIDEII 121
>gnl|CDD|178532 PLN02946, PLN02946, cysteine-tRNA ligase.
Length = 557
Score = 126 bits (319), Expect = 2e-30
Identities = 47/70 (67%), Positives = 57/70 (81%)
Query: 786 SEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKF 845
S K++P DFALWK +K GEP+W SPWG GRPGWHIECS M++A LG DIH GG+DL F
Sbjct: 230 SRKKNPADFALWKAAKEGEPFWDSPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVF 289
Query: 846 PHHDNELAQA 855
PHH+NE+AQ+
Sbjct: 290 PHHENEIAQS 299
Score = 49.9 bits (119), Expect = 5e-06
Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 15/98 (15%)
Query: 434 KSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQTSK--- 490
+ Y+TFD+L R L ++ Y + Y N TD+DDKII RA + + E+ I S+
Sbjct: 100 RVYVTFDVLYRYL-KHLGYEVRYVRNFTDVDDKIIARANE-------LGEDPISLSRRYC 151
Query: 491 --ILKDIGEVMGAFESKMKLVTD--PDKLTMMKNILSN 524
L D+ + S V+D P + M+K IL N
Sbjct: 152 EEFLSDMAYLHCLPPSVEPRVSDHIPQIIDMIKQILDN 189
Score = 48.8 bits (116), Expect = 1e-05
Identities = 22/44 (50%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 119 LPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAF 162
LPP+V RVS++IP+I+ I++I+ NG AY +G VYF+V+ F
Sbjct: 164 LPPSVEPRVSDHIPQII-DMIKQILDNGCAYRVDGDVYFSVDKF 206
Score = 43.4 bits (102), Expect = 6e-04
Identities = 17/36 (47%), Positives = 26/36 (72%)
Query: 626 TLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIV 661
+L + + EF DMA L+ LPP+V RVS++IP+I+
Sbjct: 145 SLSRRYCEEFLSDMAYLHCLPPSVEPRVSDHIPQII 180
>gnl|CDD|173001 PRK14535, cysS, cysteinyl-tRNA synthetase; Provisional.
Length = 699
Score = 116 bits (292), Expect = 1e-26
Identities = 51/87 (58%), Positives = 59/87 (67%), Gaps = 4/87 (4%)
Query: 779 DLSSQEASE----KRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQL 834
DL + E E KR P DF LWK +KAGEP W SPWG GRPGWHIECS M+ + G
Sbjct: 388 DLRAGERVEVDGFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTF 447
Query: 835 DIHTGGVDLKFPHHDNELAQAEGLPTH 861
DIH GG DL+FPHH+NE+AQ+ G H
Sbjct: 448 DIHGGGADLQFPHHENEIAQSVGATGH 474
Score = 41.2 bits (96), Expect = 0.002
Identities = 21/38 (55%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 437 ITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQN 474
+ FD++ R L E Y +TY NITDIDDKII RA +N
Sbjct: 271 VVFDMIARWLRE-CGYPLTYVRNITDIDDKIIARAAEN 307
>gnl|CDD|183518 PRK12418, PRK12418, cysteinyl-tRNA synthetase; Provisional.
Length = 384
Score = 101 bits (255), Expect = 5e-23
Identities = 39/71 (54%), Positives = 45/71 (63%)
Query: 788 KRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPH 847
KR P D LW+ ++ GEP W SP+G GRPGWHIECS +A LG DI GG DL FPH
Sbjct: 169 KRDPLDALLWRAARPGEPSWPSPFGPGRPGWHIECSAIALNRLGSGFDIQGGGSDLIFPH 228
Query: 848 HDNELAQAEGL 858
H+ A AE
Sbjct: 229 HEFSAAHAEAA 239
Score = 39.5 bits (93), Expect = 0.007
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 118 VLPPTVLTRVSEYIPEIVASYIEKIIANGLAYE----SNGSVYFNVNA 161
VLPP E IPE+V +EK++A+G AY VYF+V+A
Sbjct: 92 VLPPRDYVGAVESIPEVVEL-VEKLLASGAAYVVDDEEYPDVYFSVDA 138
Score = 38.8 bits (91), Expect = 0.011
Identities = 12/37 (32%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 435 SYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRA 471
+Y+ FD++ R+ + +++ Y N+TD+DD +++RA
Sbjct: 30 TYLAFDLVNRVWRDA-GHDVHYVQNVTDVDDPLLERA 65
Score = 36.1 bits (84), Expect = 0.087
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 635 FHKDMADLNVLPPTVLTRVSEYIPEIVA 662
F +DM L VLPP E IPE+V
Sbjct: 83 FREDMEALRVLPPRDYVGAVESIPEVVE 110
>gnl|CDD|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA
synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding.
Length = 213
Score = 97.3 bits (243), Expect = 7e-23
Identities = 27/41 (65%), Positives = 30/41 (73%)
Query: 818 WHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGL 858
WHIECS MA LG DIH GGVDL FPHH+NE+AQ+E
Sbjct: 113 WHIECSAMAMKYLGETFDIHGGGVDLIFPHHENEIAQSEAA 153
Score = 82.6 bits (205), Expect = 8e-18
Identities = 27/55 (49%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQ 487
++Y+ FD+LRR L E Y + Y NITDIDDKIIKRAR+ L K V + +
Sbjct: 39 ARTYVVFDVLRRYL-EDLGYKVRYVQNITDIDDKIIKRAREEGLSWKEVADYYTK 92
Score = 49.1 bits (118), Expect = 2e-06
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 620 DNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRV 653
+ + + ++ EF +DM LNVLPP V+ RV
Sbjct: 79 EGLSWKEVADYYTKEFFEDMKALNVLPPDVVPRV 112
Score = 32.6 bits (75), Expect = 0.73
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 573 DNSIFATLPKHWEAEFHKDMADLN 596
+ + + ++ EF +DM LN
Sbjct: 79 EGLSWKEVADYYTKEFFEDMKALN 102
>gnl|CDD|184731 PRK14536, cysS, cysteinyl-tRNA synthetase; Provisional.
Length = 490
Score = 96.9 bits (241), Expect = 7e-21
Identities = 41/75 (54%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 786 SEKRSPNDFALW-KKSKAGEP--WWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVD 842
+ KR+P+DF LW +SK W SPWG G PGWHIECS M+ LG Q DIH GGVD
Sbjct: 183 TNKRNPHDFVLWFTRSKFENHALTWDSPWGRGYPGWHIECSAMSMKYLGEQCDIHIGGVD 242
Query: 843 LKFPHHDNELAQAEG 857
HH NE+AQ E
Sbjct: 243 HIRVHHTNEIAQCEA 257
Score = 43.0 bits (101), Expect = 6e-04
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 18/80 (22%)
Query: 121 PTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPNHYYAKLVPEAYGD 180
P+++ +E+I +++A I+++ A G Y + G+VYF++ F S Y L A
Sbjct: 119 PSIVCNATEHIQDMIA-LIKRLEARGHTYCAGGNVYFDIRTFPS-----YGSL---ASAA 169
Query: 181 TKTLQEGEVRGYPPWPARIE 200
+ LQ G ARIE
Sbjct: 170 VEDLQAG---------ARIE 180
Score = 39.1 bits (91), Expect = 0.010
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 11/50 (22%)
Query: 434 KSYITFDILRRILSEYFNYNITYAMNITDI----------DDKIIKRARQ 473
++Y+ D LRR L + Y +T+ MNITD+ +DK++K A++
Sbjct: 43 RTYVFQDTLRRTL-HFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQE 91
Score = 31.4 bits (71), Expect = 2.4
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 629 KHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVA 662
H+ A F +D A LN+ P+++ +E+I +++A
Sbjct: 101 AHYTAAFFRDTARLNIERPSIVCNATEHIQDMIA 134
>gnl|CDD|132488 TIGR03447, mycothiol_MshC, cysteine--1-D-myo-inosityl
2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members
of this protein family are MshC,
l-cysteine:1-D-myo-inosityl
2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an
enzyme that uses ATP to ligate a Cys residue to a
mycothiol precursor molecule, in the second to last step
in mycothiol biosynthesis. This enzyme shows
considerable homology to Cys--tRNA ligases, and many
instances are misannotated as such. Mycothiol is found
in Mycobacterium tuberculosis, Corynebacterium
glutamicum, Streptomyces coelicolor, and various other
members of the Actinobacteria. Mycothiol is an analog to
glutathione [Biosynthesis of cofactors, prosthetic
groups, and carriers, Glutathione and analogs].
Length = 411
Score = 95.6 bits (238), Expect = 9e-21
Identities = 39/71 (54%), Positives = 45/71 (63%)
Query: 788 KRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPH 847
KR P D LW+ ++ GEP W SP+G GRPGWHIECS +A LG DI GG DL FPH
Sbjct: 196 KRDPLDALLWRAAREGEPSWDSPFGRGRPGWHIECSAIALNRLGAGFDIQGGGSDLIFPH 255
Query: 848 HDNELAQAEGL 858
H+ A AE
Sbjct: 256 HEFSAAHAEAA 266
Score = 38.9 bits (91), Expect = 0.011
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 118 VLPPTVLTRVSEYIPEIVASYIEKIIANGLAYE----SNGSVYFNVNA 161
VLPP E I E+V +EK++A+G AY VYF+++A
Sbjct: 119 VLPPRDYIGAVESIDEVVE-MVEKLLASGAAYIVEGPEYPDVYFSIDA 165
Score = 38.2 bits (89), Expect = 0.017
Identities = 13/37 (35%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 435 SYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRA 471
+Y+TFD++ R+ + + + Y N+TD+DD + +RA
Sbjct: 57 TYLTFDLVNRVWRDA-GHRVHYVQNVTDVDDPLFERA 92
Score = 34.7 bits (80), Expect = 0.20
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 635 FHKDMADLNVLPPTVLTRVSEYIPEIVASAQT 666
F +DM L VLPP E I E+V +
Sbjct: 110 FREDMEALRVLPPRDYIGAVESIDEVVEMVEK 141
>gnl|CDD|99895 cd05834, HDGF_related, The PWWP domain is an essential part of the
Hepatoma Derived Growth Factor (HDGF) family of
proteins, and is necessary for DNA binding by HDGF. This
family of endogenous nuclear-targeted mitogens includes
HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, HPR2,
HPR3, HPR4, respectively) and lens epithelium-derived
growth factor, LEDGF. Members of the HDGF family have
been linked to human diseases, and HDGF is a prognostic
factor in several types of cancer. The PWWP domain,
named for a conserved Pro-Trp-Trp-Pro motif, is a small
domain consisting of 100-150 amino acids. The PWWP
domain is found in numerous proteins that are involved
in cell division, growth and differentiation. Most
PWWP-domain proteins seem to be nuclear, often
DNA-binding, proteins that function as transcription
factors regulating a variety of developmental processes.
Length = 83
Score = 80.8 bits (200), Expect = 2e-18
Identities = 27/59 (45%), Positives = 39/59 (66%)
Query: 187 GEVRGYPPWPARIEGLADETPNRLKYHIFFYGTRETGICRQDELFPYTEFKDKYGKVRV 245
+V+GYP WPAR++ D P KY ++F+GT ET + ++LFPYTE K K+GK +
Sbjct: 11 AKVKGYPAWPARVDEPEDWKPPGKKYPVYFFGTHETAFLKPEDLFPYTENKKKFGKPKK 69
>gnl|CDD|173000 PRK14534, cysS, cysteinyl-tRNA synthetase; Provisional.
Length = 481
Score = 74.5 bits (183), Expect = 1e-13
Identities = 36/72 (50%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 788 KRSPNDFALW---KKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLK 844
KR+ +DF LW K K E W SPWG G P WH+EC+ M LDIH GGVD
Sbjct: 185 KRNKSDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKSTLDIHLGGVDHI 244
Query: 845 FPHHDNELAQAE 856
HH NE+A AE
Sbjct: 245 GVHHINEIAIAE 256
Score = 40.2 bits (94), Expect = 0.005
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 11/53 (20%)
Query: 434 KSYITFDILRRILSEYFNYNITYAMNITDI----------DDKIIKRARQNYL 476
++YI D+L + L YN+ YAMNITDI +DK++K AR+ L
Sbjct: 41 RTYIFEDLLIKSL-RLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGL 92
Score = 33.7 bits (77), Expect = 0.47
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 118 VLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDS 164
V P VL SEYIP ++ ++ + NG Y NG+VYF+ + F S
Sbjct: 115 VYPDKVLV-ASEYIPIMI-EVVKVLEENGFTYFVNGNVYFDTSCFKS 159
>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated.
Length = 430
Score = 60.4 bits (146), Expect = 2e-09
Identities = 45/143 (31%), Positives = 62/143 (43%), Gaps = 11/143 (7%)
Query: 662 ASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAA----KKAESSSDD 717
A+A+ A AK+ +++ + E+E KA AK A A AAA K AE+
Sbjct: 133 AAAKAKAAALAKQKREGTEEVTEEEEETDKEKAKAKAAAAAKAKAAALAKQKAAEAGEGT 192
Query: 718 DSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAK- 776
+ +E+EK K A A+A A AK+ S + DS ED K A AK A AA
Sbjct: 193 EEVTEEEKAKAKAKAAAAAKAKAAALAKQKASQGNGDSGDEDAKAKAIAAAKAKAAAAAR 252
Query: 777 ------PGDLSSQEASEKRSPND 793
G + E+ S N
Sbjct: 253 AKTKGAEGKKEEEPKQEEPSVNQ 275
Score = 53.8 bits (129), Expect = 3e-07
Identities = 34/109 (31%), Positives = 48/109 (44%), Gaps = 5/109 (4%)
Query: 662 ASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSS 721
A A+ A K AE+ + +E+EK KA A A A A AK+ S + DS
Sbjct: 173 AKAKAAALAKQKAAEAGEGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKASQGNGDSGD 232
Query: 722 EDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKP 770
ED K AK AK AAA +A++ + E+ K + +P
Sbjct: 233 EDAKAKAIAAAK-----AKAAAAARAKTKGAEGKKEEEPKQEEPSVNQP 276
Score = 52.3 bits (125), Expect = 7e-07
Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 1/127 (0%)
Query: 662 ASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSS 721
A+A+ A AK+ +++ + E KA A A AA A K+ + +
Sbjct: 99 AAAKAKAAALAKQKREGTEEVTEEEKAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEEE 158
Query: 722 EDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQA-AKPGDL 780
E +K K A A+A A AK+ + + + + E+ KA AK A A AK L
Sbjct: 159 ETDKEKAKAKAAAAAKAKAAALAKQKAAEAGEGTEEVTEEEKAKAKAKAAAAAKAKAAAL 218
Query: 781 SSQEASE 787
+ Q+AS+
Sbjct: 219 AKQKASQ 225
Score = 52.3 bits (125), Expect = 9e-07
Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 10/140 (7%)
Query: 659 EIVASAQTPKPAAAKKAESSS-------DDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKA 711
++ + AAA KA++++ + +E+EK KA A A A A AK+
Sbjct: 53 DMTIEEAKRRAAAAAKAKAAALAKQKREGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQK 112
Query: 712 ESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPV 771
+++ +E+EK A K A A+A A AK+ +++ + E+E KA AK
Sbjct: 113 REGTEE--VTEEEKAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEEEETDKEKAKAKAA 170
Query: 772 AQA-AKPGDLSSQEASEKRS 790
A A AK L+ Q+A+E
Sbjct: 171 AAAKAKAAALAKQKAAEAGE 190
Score = 41.1 bits (96), Expect = 0.002
Identities = 36/142 (25%), Positives = 58/142 (40%), Gaps = 9/142 (6%)
Query: 664 AQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSED 723
++ + K+ +DD + E+ K A AK A AA A K+ + +E+
Sbjct: 35 SKLEEENREKEKALPKNDDMTIEEAKRRAAAAAK--AKAAALAKQKREGTEE----VTEE 88
Query: 724 EKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAA---KPGDL 780
EK K A A+A A AK+ +++ + E KA A A+AA K
Sbjct: 89 EKAKAKAKAAAAAKAKAAALAKQKREGTEEVTEEEKAAAKAKAAAAAKAKAAALAKQKRE 148
Query: 781 SSQEASEKRSPNDFALWKKSKA 802
++E +E+ D K A
Sbjct: 149 GTEEVTEEEEETDKEKAKAKAA 170
Score = 37.3 bits (86), Expect = 0.041
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 661 VASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSS 720
A+A+ A AK+ S + DS ED K A AK A AA A K AE +++
Sbjct: 208 AAAAKAKAAALAKQKASQGNGDSGDEDAKAKAIAAAKAKAAAAARAKTKGAEGKKEEE-- 265
Query: 721 SEDEKPAVKTP 731
+ E+P+V P
Sbjct: 266 PKQEEPSVNQP 276
Score = 31.9 bits (72), Expect = 1.6
Identities = 34/142 (23%), Positives = 55/142 (38%), Gaps = 17/142 (11%)
Query: 665 QTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDE 724
+ K AA++A+ E K V ++ E K+ +DD + E+
Sbjct: 8 EDLKKEAARRAKE--------EARKRLVAKHGAEISKLEEENREKEKALPKNDDMTIEEA 59
Query: 725 KPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQ- 783
K + A A AAA + + +E+EK KA A A+ AK L+ Q
Sbjct: 60 KR------RAAAAAKAKAAALAKQKREGTEEVTEEEKAKAKAKAAAAAK-AKAAALAKQK 112
Query: 784 -EASEKRSPNDFALWKKSKAGE 804
E +E+ + + A K A
Sbjct: 113 REGTEEVTEEEKAAAKAKAAAA 134
>gnl|CDD|216154 pfam00855, PWWP, PWWP domain. The PWWP domain is named after a
conserved Pro-Trp-Trp-Pro motif. The domain binds to
Histone-4 methylated at lysine-20, H4K20me, suggesting
that it is methyl-lysine recognition motif. Removal of
two conserved aromatic residues in a hydrophobic cavity
created by this domain within the full-lemgth protein,
Pdp1, abolishes the interaction o f the protein with
H4K20me3. In fission yeast, Set9 is the sole enzyme that
catalyzes all three states of H4K20me, and Set9-mediated
H4K20me is required for efficient recruitment of
checkpoint protein Crb2 to sites of DNA damage. The
methylation of H4K20 is involved in a diverse array of
cellular processes, such as organising higher-order
chromatin, maintaining genome stability, and regulating
cell-cycle progression.
Length = 74
Score = 53.9 bits (130), Expect = 3e-09
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 187 GEVRGYPPWPARIEGLADETPNRL----KYHIFFYGTRETGICRQDELFPYTEFKDKYGK 242
+++G+P WPARI ETP + + + F+G +T L P +K+ K
Sbjct: 10 AKMKGFPWWPARIVSQK-ETPTSIRKDNRVKVQFFGDHKTAWVSPKRLKPLDVDIEKFHK 68
>gnl|CDD|99894 cd05162, PWWP, The PWWP domain, named for a conserved
Pro-Trp-Trp-Pro motif, is a small domain consisting of
100-150 amino acids. The PWWP domain is found in
numerous proteins that are involved in cell division,
growth and differentiation. Most PWWP-domain proteins
seem to be nuclear, often DNA-binding, proteins that
function as transcription factors regulating a variety
of developmental processes. The function of the PWWP
domain is still not known precisely; however, based on
the fact that other regions of PWWP-domain proteins are
responsible for nuclear localization and DNA-binding, is
likely that the PWWP domain acts as a site for
protein-protein binding interactions, influencing
chromatin remodeling and thereby regulating
transcriptional processes. Some PWWP-domain proteins
have been linked to cancer or other diseases; some are
known to function as growth factors.
Length = 87
Score = 49.7 bits (119), Expect = 1e-07
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 187 GEVRGYPPWPARIEGLADETPNRL------KYHIFFYGTRETGICRQDELFPYTEFKDKY 240
+++GYP WPA + ++ K + F+G + + L P+TE K+
Sbjct: 9 AKMKGYPWWPALVVDPPKDSKKAKKKAKEGKVLVLFFGDKTFAWVGAERLKPFTEHKESE 68
Query: 241 GKVR 244
K
Sbjct: 69 AKQS 72
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC;
Provisional.
Length = 695
Score = 53.0 bits (128), Expect = 5e-07
Identities = 31/124 (25%), Positives = 45/124 (36%), Gaps = 6/124 (4%)
Query: 670 AAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVK 729
A AKKA + + + E+ P A A +A A AKKA + E
Sbjct: 557 AKAKKAAQQAANAEAEEEVDPKKAAVAAAIARAK----AKKAAQQAASAEPEEQVAEVDP 612
Query: 730 TPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKR 789
A A A+ A K + ++ + D + A A A A+A K Q +E
Sbjct: 613 KKAAVAAAIARAKAKKAEQQANAEPEEPVDPRKAAVAAAIARAKARKAAQ--QQANAEPE 670
Query: 790 SPND 793
D
Sbjct: 671 EAED 674
Score = 52.3 bits (126), Expect = 9e-07
Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 7/125 (5%)
Query: 664 AQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSED 723
A A +A + +++ D K A VA A A AKKA + + + E+
Sbjct: 521 AAREARKAQARARQAEKQAAAAADPKKAA------VAAAIARAKAKKAAQQAANAEAEEE 574
Query: 724 EKPAVKTPAKPVAQA-AKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSS 782
P A +A+A AK AA + A + ++ + D K A A A A+A K ++
Sbjct: 575 VDPKKAAVAAAIARAKAKKAAQQAASAEPEEQVAEVDPKKAAVAAAIARAKAKKAEQQAN 634
Query: 783 QEASE 787
E E
Sbjct: 635 AEPEE 639
Score = 49.9 bits (120), Expect = 5e-06
Identities = 34/110 (30%), Positives = 42/110 (38%), Gaps = 10/110 (9%)
Query: 670 AAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDD-DSSSEDEKPAV 728
A AKKA + E A VA A A AKKAE ++ D + A
Sbjct: 589 AKAKKAAQQAASAEPEEQVAEVDPKKAA-VAAAIARAKAKKAEQQANAEPEEPVDPRKAA 647
Query: 729 KTPAKPVAQAAKPAAAKKAESSSDDDS--SSEDEKPAVKAPAKPVAQAAK 776
VA A A A+KA + +ED K A A A A+A K
Sbjct: 648 ------VAAAIARAKARKAAQQQANAEPEEAEDPKKAAVAAAIARAKAKK 691
Score = 44.6 bits (106), Expect = 3e-04
Identities = 28/133 (21%), Positives = 49/133 (36%), Gaps = 9/133 (6%)
Query: 662 ASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKA-PAKPVAHAAEPAAAKKAESSSDDDSS 720
A + AA + ++ + K + + +A A +A + ++
Sbjct: 482 AKDKDAVAAALARVKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQARARQAEKQAAA 541
Query: 721 SEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSE--DEKPAVKAPAKPVAQAAKPG 778
+ D K A VA A A AKKA + + + E D K A A A A+A K
Sbjct: 542 AADPKKAA------VAAAIARAKAKKAAQQAANAEAEEEVDPKKAAVAAAIARAKAKKAA 595
Query: 779 DLSSQEASEKRSP 791
++ E++
Sbjct: 596 QQAASAEPEEQVA 608
Score = 39.9 bits (94), Expect = 0.007
Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 13/93 (13%)
Query: 658 PEIVASAQTPKPAAAKKAE--SSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSS 715
P+ A A A AKKAE ++++ + + K AV A A A A+KA
Sbjct: 612 PKKAAVAAAIARAKAKKAEQQANAEPEEPVDPRKAAVAA-------AIARAKARKAAQQQ 664
Query: 716 DDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAE 748
+ E E P A A A+ A AKKA
Sbjct: 665 ANAEPEEAEDPK---KAAVAAAIAR-AKAKKAA 693
Score = 38.0 bits (89), Expect = 0.028
Identities = 29/122 (23%), Positives = 44/122 (36%), Gaps = 24/122 (19%)
Query: 686 EDEKPAVKAPAK------------PVAHAAEPAAAKKA--ESSSDDDSSSEDEKPAVKTP 731
E EK A +A K VA A AKKA + + + AV
Sbjct: 463 EREKAAREARHKKAAEARAAKDKDAVAAALARVKAKKAAATQPIVIKAGARPDNSAVIAA 522
Query: 732 AKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAV-----KAPAKPVAQAAKPGDLSSQEAS 786
+ A+ A+K +++ D +K AV +A AK AQ A + +
Sbjct: 523 REARKAQARARQAEKQAAAAAD-----PKKAAVAAAIARAKAKKAAQQAANAEAEEEVDP 577
Query: 787 EK 788
+K
Sbjct: 578 KK 579
Score = 30.3 bits (69), Expect = 5.5
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 57 KETLAKEKEAKRLAEAEKAAEKERKKAE--LAAAQEAKEAQK 96
+ L +EK A R A +KAAE K + +AAA +A+K
Sbjct: 459 QARLEREKAA-REARHKKAAEARAAKDKDAVAAALARVKAKK 499
>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional.
Length = 333
Score = 51.4 bits (123), Expect = 1e-06
Identities = 42/139 (30%), Positives = 59/139 (42%), Gaps = 15/139 (10%)
Query: 667 PKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPA--AAKKAESSSDDDSSSEDE 724
K AA A S +S++ + A K K A A A AAK A ++ + +
Sbjct: 199 AKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAK--KAKKTA 256
Query: 725 KPAVKTPAKPVAQAAKPAA--AKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSS 782
K A+K AK V +AAK AA A KA + A K AK +A K S
Sbjct: 257 KKALKKAAKAVKKAAKKAAKAAAKAAKGA---------AKATKGKAKAKKKAGKKAAAGS 307
Query: 783 QEASEKRSPNDFALWKKSK 801
+ + ++P A KK+K
Sbjct: 308 KAKATAKAPKRGAKGKKAK 326
Score = 50.7 bits (121), Expect = 2e-06
Identities = 33/145 (22%), Positives = 54/145 (37%), Gaps = 6/145 (4%)
Query: 652 RVSEYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAH------AAEP 705
RV + A PAA A+ +S S+ + KA V+ AA+
Sbjct: 189 RVLAAVGAANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKA 248
Query: 706 AAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVK 765
A K + +++ K A K AK A+AAK AA + + + K
Sbjct: 249 AKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSK 308
Query: 766 APAKPVAQAAKPGDLSSQEASEKRS 790
A A A +++ ++KR+
Sbjct: 309 AKATAKAPKRGAKGKKAKKVTKKRA 333
Score = 48.0 bits (114), Expect = 1e-05
Identities = 34/121 (28%), Positives = 49/121 (40%), Gaps = 14/121 (11%)
Query: 687 DEKPAVKAPAKPVAH---AAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPA- 742
+ K A K PA +A+ +A K S ++ K A KT AK +A K A
Sbjct: 198 NAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAK 257
Query: 743 -AAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRSPNDFALWKKSK 801
A KKA + K A K AK A+AAK +++ ++ + SK
Sbjct: 258 KALKKAAKAV---------KKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSK 308
Query: 802 A 802
A
Sbjct: 309 A 309
Score = 43.0 bits (101), Expect = 5e-04
Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
Query: 702 AAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEK 761
A+ AA A S +S++ + A K K +AAK A + K + + ++ + +K
Sbjct: 198 NAKKAAKTPAAKSGAKKASAKAKSAAKKVSKK---KAAKTAVSAKKAAKTAAKAAKKAKK 254
Query: 762 PAVKAPAKPVAQAAKPGDLSSQEASEKRSPNDFALWKKSKAGEP 805
A KA K K +++ A++ A K+KA +
Sbjct: 255 TAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKK 298
Score = 29.9 bits (67), Expect = 6.0
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 44 PSIGRPSAVKLVDKETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKK 97
S + + K K ++ +K AK A+A K A+K KKA AA+ K+A KK
Sbjct: 220 KSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKK 273
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 52.2 bits (125), Expect = 1e-06
Identities = 45/182 (24%), Positives = 61/182 (33%), Gaps = 33/182 (18%)
Query: 646 PPTVLTRVSEYIPEIVASAQTPKPAAAKKAESSSDDDSSSED--EKPAV--------KAP 695
+ + +P A+A+ KP A+ S SDDD A K
Sbjct: 1281 QSAKMEETVKAVPARRAAAR-KKPLASVSVISDSDDDDDDFAVEVSLAERLKKKGGRKPA 1339
Query: 696 AKPVAHAAEPAAAKKAESSS--------------DDDSSSEDEKPAVKTPAKPVAQ---- 737
A A PAAAKK ++ + EK K A P +
Sbjct: 1340 AANKKAAKPPAAAKKRGPATVQSGQKLLTEMLKPAEAIGISPEKKVRKMRASPFNKKSGS 1399
Query: 738 -AAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLS---SQEASEKRSPND 793
+ A K+ ESS + SS EK + AKP Q A + S SE +D
Sbjct: 1400 VLGRAATNKETESSENVSGSSSSEKDEIDVSAKPRPQRANRKQTTYVLSDSESESADDSD 1459
Query: 794 FA 795
F
Sbjct: 1460 FD 1461
Score = 44.1 bits (104), Expect = 4e-04
Identities = 46/191 (24%), Positives = 64/191 (33%), Gaps = 36/191 (18%)
Query: 662 ASAQTPKPAAA----KKAESS-----SDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAE 712
S Q PK A KKA S + S+ E E A K A A + A A E
Sbjct: 1197 VSRQAPKKPAPKKTTKKASESETTEETYGSSAMETENVAEVVKPKGRAGAKKKAPAAAKE 1256
Query: 713 SSSDDD------------------SSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDD 754
+D+ S++ E+ PA+ A KP A+ S SDDD
Sbjct: 1257 KEEEDEILDLKDRLAAYNLDSAPAQSAKMEETVKAVPARRAAARKKPLASVSVISDSDDD 1316
Query: 755 ---------SSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRSPNDFALWKKSKAGEP 805
+ +K + PA +AAKP + + L + K E
Sbjct: 1317 DDDFAVEVSLAERLKKKGGRKPAAANKKAAKPPAAAKKRGPATVQSGQKLLTEMLKPAEA 1376
Query: 806 WWSSPWGEGRP 816
SP + R
Sbjct: 1377 IGISPEKKVRK 1387
Score = 35.6 bits (82), Expect = 0.17
Identities = 27/130 (20%), Positives = 43/130 (33%), Gaps = 6/130 (4%)
Query: 668 KPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESS-----SDDDSSSE 722
+ A A++A ++ + A K + A KKA S + S+ E
Sbjct: 1171 EDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASESETTEETYGSSAME 1230
Query: 723 DEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSS-EDEKPAVKAPAKPVAQAAKPGDLS 781
E A K A A K A A E +D+ +D A + P A +
Sbjct: 1231 TENVAEVVKPKGRAGAKKKAPAAAKEKEEEDEILDLKDRLAAYNLDSAPAQSAKMEETVK 1290
Query: 782 SQEASEKRSP 791
+ A +
Sbjct: 1291 AVPARRAAAR 1300
Score = 34.5 bits (79), Expect = 0.32
Identities = 33/152 (21%), Positives = 46/152 (30%), Gaps = 31/152 (20%)
Query: 671 AAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSED--EKPAV 728
AA +S+ + E+ AV PA+ A +P A+ S SDDD A
Sbjct: 1271 AAYNLDSAPAQSAKMEETVKAV--PARRAAARKKPLASVSVISDSDDDDDDFAVEVSLAE 1328
Query: 729 KTPAK---PVAQAAKPAAAKKA-------------------ESSSDDDSSSEDEKPAVKA 766
+ K A A K AA A + EK K
Sbjct: 1329 RLKKKGGRKPAAANKKAAKPPAAAKKRGPATVQSGQKLLTEMLKPAEAIGISPEKKVRKM 1388
Query: 767 PAKPVAQ-----AAKPGDLSSQEASEKRSPND 793
A P + + E+SE S +
Sbjct: 1389 RASPFNKKSGSVLGRAATNKETESSENVSGSS 1420
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau;
Validated.
Length = 824
Score = 49.6 bits (119), Expect = 7e-06
Identities = 39/156 (25%), Positives = 48/156 (30%), Gaps = 16/156 (10%)
Query: 662 ASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSS 721
A A PAA A +++ +S P V AP H A P A S D +
Sbjct: 617 APAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDA-----SDGGDGWPA 671
Query: 722 EDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLS 781
+ A P A AA A A A + A P QA P
Sbjct: 672 KAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAP----------AATPPAGQADDPAAQP 721
Query: 782 SQEASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPG 817
Q A +P+ A EP P G P
Sbjct: 722 PQAAQGASAPSPAADDPVPLPPEP-DDPPDPAGAPA 756
Score = 43.1 bits (102), Expect = 7e-04
Identities = 28/130 (21%), Positives = 49/130 (37%), Gaps = 2/130 (1%)
Query: 649 VLTRVSEYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAA 708
+L R+ + + PAAA + +++ ++ A A A P AA A
Sbjct: 374 LLARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAP 433
Query: 709 KKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPA 768
A + + + +P A +A+PA A ++ + ++ PA APA
Sbjct: 434 APAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPA--PAAAPEPTAAPAPAPPAAPAPA 491
Query: 769 KPVAQAAKPG 778
A A P
Sbjct: 492 AAPAAPAAPA 501
Score = 38.8 bits (91), Expect = 0.015
Identities = 29/158 (18%), Positives = 40/158 (25%), Gaps = 18/158 (11%)
Query: 660 IVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDS 719
P A + + + E +PA APA P A AA A A +
Sbjct: 585 EAVVGPAPGAAGGEGPPAPASSGPPEEAARPA--APAAPAAPAAPAPAGAAAAPA----- 637
Query: 720 SSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGD 779
E A P + A S D ++ A AP A AA
Sbjct: 638 ----EASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAP 693
Query: 780 LSSQEASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPG 817
+ A +P P +
Sbjct: 694 AGAAPAQPAPAPA----ATPPAGQ---ADDPAAQPPQA 724
Score = 37.3 bits (87), Expect = 0.040
Identities = 23/121 (19%), Positives = 38/121 (31%), Gaps = 4/121 (3%)
Query: 677 SSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVA 736
S+SDD+ ++ A PAAA + +++ ++ A A P
Sbjct: 366 SASDDERGLLARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAP 425
Query: 737 QAAKPAA----AKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRSPN 792
AA A A S ++ + A A A P A+ +P
Sbjct: 426 AAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPP 485
Query: 793 D 793
Sbjct: 486 A 486
Score = 35.7 bits (83), Expect = 0.13
Identities = 28/109 (25%), Positives = 42/109 (38%), Gaps = 7/109 (6%)
Query: 658 PEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDD 717
A A P+PA A + S PA AP+ P A A A ++ +
Sbjct: 420 AAAPAPAAAPQPAPAPAPAPAP---PSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEP 476
Query: 718 DSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKA 766
++ PA PA A A PA A + +DD ++ + P + A
Sbjct: 477 TAAPAPAPPAAPAPAAAPAAPAAPA----APAGADDAATLRERWPEILA 521
Score = 33.8 bits (78), Expect = 0.47
Identities = 27/103 (26%), Positives = 38/103 (36%), Gaps = 1/103 (0%)
Query: 690 PAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKT-PAKPVAQAAKPAAAKKAE 748
A A A AA PA A A +++ + + +PA PA A A A A
Sbjct: 395 AAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAP 454
Query: 749 SSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRSP 791
S + S PA A +P A A + A+ +P
Sbjct: 455 SPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAP 497
>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase;
Reviewed.
Length = 460
Score = 48.8 bits (116), Expect = 1e-05
Identities = 23/132 (17%), Positives = 43/132 (32%), Gaps = 9/132 (6%)
Query: 662 ASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEP----AAAKKAESSSDD 717
A+ + AES + PAV+ ++ +P A A +
Sbjct: 333 VKAEVAEVTDEVAAESVVQVADRDGESTPAVEETSEADIEREQPGDLAGQAPAAHQVDAE 392
Query: 718 DSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKP 777
+S+ E+PA +P +KA D ++ ++ AV P A+
Sbjct: 393 AASAAPEEPAALASEAH--DETEPEVPEKAAPIPD---PAKPDELAVAGPGDDPAEPDGI 447
Query: 778 GDLSSQEASEKR 789
+ +R
Sbjct: 448 RRQDDFSSRRRR 459
Score = 48.8 bits (116), Expect = 1e-05
Identities = 34/162 (20%), Positives = 59/162 (36%), Gaps = 26/162 (16%)
Query: 652 RVSEYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKA-PAKP-------VAHAA 703
R SEY+ + A +PA +++ S++ P P +P A A
Sbjct: 286 RGSEYVVD---EALEREPAEL----AAAAVASAASAVGPVGPGEPNQPDDVAEAVKAEVA 338
Query: 704 EPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPA 763
E AES + PAV+ ++ + +P ++ + +E A
Sbjct: 339 EVTDEVAAESVVQVADRDGESTPAVEETSEADIEREQPGDLA-GQAPAAHQVDAEA---A 394
Query: 764 VKAPAKPVAQAAKPGDLSSQEASEKRSPNDFALWKKSKAGEP 805
AP +P A A++ D + E EK +P +P
Sbjct: 395 SAAPEEPAALASEAHDETEPEVPEKAAP-------IPDPAKP 429
Score = 42.7 bits (100), Expect = 8e-04
Identities = 24/133 (18%), Positives = 43/133 (32%), Gaps = 7/133 (5%)
Query: 662 ASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSS 721
A+ K A+ + + + ++ PA V +E ++ + +
Sbjct: 328 DVAEAVKAEVAEVTDEVAAESVVQVADRDGESTPA--VEETSEADIEREQPGDLAGQAPA 385
Query: 722 EDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLS 781
+ A A P AA + A + ++ PA P + A PGD
Sbjct: 386 AHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPA--KPDELAV--AGPGD-D 440
Query: 782 SQEASEKRSPNDF 794
E R +DF
Sbjct: 441 PAEPDGIRRQDDF 453
Score = 41.5 bits (97), Expect = 0.002
Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 5/96 (5%)
Query: 658 PEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDD 717
+I A A + +S+ E+PA A EP +KA D
Sbjct: 369 ADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAH--DETEPEVPEKAAPIPD- 425
Query: 718 DSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDD 753
++ ++ AV P A+ S
Sbjct: 426 --PAKPDELAVAGPGDDPAEPDGIRRQDDFSSRRRR 459
Score = 30.7 bits (69), Expect = 4.4
Identities = 9/50 (18%), Positives = 14/50 (28%)
Query: 61 AKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKKIPPSEMFKMETDK 110
E+E + A + +AA E A E +K
Sbjct: 370 DIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEK 419
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau;
Validated.
Length = 830
Score = 49.1 bits (117), Expect = 1e-05
Identities = 28/121 (23%), Positives = 45/121 (37%), Gaps = 4/121 (3%)
Query: 661 VASAQTPKPAAAKKAESSSDDDSSSEDEKPAVK---APAKPVAHAAEPAAAKKAESSSDD 717
A+ PAA ++ D +++ + P A A + E A A+S S
Sbjct: 419 AATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSAS 478
Query: 718 DSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKP 777
+S+ A PA A + A ++ + +S ED A PA P A+ P
Sbjct: 479 APASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPA-PEARPPTP 537
Query: 778 G 778
Sbjct: 538 A 538
Score = 49.1 bits (117), Expect = 1e-05
Identities = 26/138 (18%), Positives = 44/138 (31%), Gaps = 8/138 (5%)
Query: 661 VASAQTPKPAAAKKAE-------SSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAES 713
+A PK AAA A + + ++ + A P A A+A
Sbjct: 406 AGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAK-ANARASADSRCD 464
Query: 714 SSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQ 773
D ++ + P A +PA A S++ + + PA + A
Sbjct: 465 ERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAA 524
Query: 774 AAKPGDLSSQEASEKRSP 791
AA P + +P
Sbjct: 525 AAPPAPEARPPTPAAAAP 542
Score = 47.9 bits (114), Expect = 2e-05
Identities = 18/123 (14%), Positives = 37/123 (30%), Gaps = 9/123 (7%)
Query: 689 KPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAE 748
P +A A A A A ++ P A A PAA
Sbjct: 382 APGARAAAAVGASAVPAVTAVTG-------AAGAALAPKAAAAAAATRAEAPPAAPAPPA 434
Query: 749 SSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRSPNDFALWKKSKAGEPWWS 808
++ D +++ + P + ++ + +Q ++ S A + +
Sbjct: 435 TADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGS--ASAPASDAPPDAAFEP 492
Query: 809 SPW 811
+P
Sbjct: 493 APR 495
Score = 47.5 bits (113), Expect = 3e-05
Identities = 21/144 (14%), Positives = 40/144 (27%), Gaps = 5/144 (3%)
Query: 662 ASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSS 721
+ A+ ++ ++ P A A A PAA ++ D ++
Sbjct: 384 GARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAA 443
Query: 722 EDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLS 781
+ + P + ++ + S PA AP + A
Sbjct: 444 DGDAPVPAKANARASADSRCDERDAQPPA----DSGSASAPASDAPPDAAFEPAPRAAAP 499
Query: 782 SQEASEKRSPNDFALWKKSKAGEP 805
S P+ A S+ P
Sbjct: 500 SAATP-AAVPDARAPAAASREDAP 522
Score = 47.2 bits (112), Expect = 5e-05
Identities = 30/137 (21%), Positives = 44/137 (32%), Gaps = 12/137 (8%)
Query: 653 VSEYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAE 712
V ++ A+ S + + D P P A A A
Sbjct: 449 VPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVP 508
Query: 713 SSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSS-----------SEDEK 761
+ ++S ++ PA P P A+ PAAA A + ++ S D
Sbjct: 509 DARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDRG 568
Query: 762 PAVKAPAKPVA-QAAKP 777
A AKP A AA P
Sbjct: 569 ARAAAAAKPAAAPAAAP 585
Score = 44.5 bits (105), Expect = 3e-04
Identities = 21/135 (15%), Positives = 42/135 (31%), Gaps = 10/135 (7%)
Query: 658 PEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDD 717
A+ P AA A +++ E P A + AA A +
Sbjct: 401 AVTGAAGAALAPKAAAAA-------AATRAEAPPAAPAPPATADRGDDAADGDAPVPAKA 453
Query: 718 DSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKP 777
++ + + + A+P A + +A S + D++ E A A A
Sbjct: 454 NARASADSRCDERDAQPPADSGSASAPA---SDAPPDAAFEPAPRAAAPSAATPAAVPDA 510
Query: 778 GDLSSQEASEKRSPN 792
++ + +
Sbjct: 511 RAPAAASREDAPAAA 525
Score = 39.1 bits (91), Expect = 0.014
Identities = 30/138 (21%), Positives = 43/138 (31%), Gaps = 20/138 (14%)
Query: 659 EIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESS---- 714
E A P A + ++S ++ PA AP P A PAAA A +
Sbjct: 491 EPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAA 550
Query: 715 -------------SDDDSSSED--EKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSED 759
S D + KPA A P AA A + + +
Sbjct: 551 AALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAP-KPAAPRVAVQVPTPRARAATGDAP 609
Query: 760 EKPAVKAPAKPVAQAAKP 777
A +A ++ A P
Sbjct: 610 PNGAARAEQAAESRGAPP 627
Score = 33.7 bits (77), Expect = 0.53
Identities = 33/136 (24%), Positives = 46/136 (33%), Gaps = 32/136 (23%)
Query: 646 PPTVLTRVSEYIP--EIVASAQTPKPAAAKKAESSSDDDSS-----------SEDEKPAV 692
P +R A+ P PAAA A + ++ S D
Sbjct: 512 APAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARA 571
Query: 693 KAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTP---AKPVAQAAKPAAAKKAES 749
A AKP A A AA K A + AV+ P A+ A P A +AE
Sbjct: 572 AAAAKPAA--APAAAPKPAAP-----------RVAVQVPTPRARAATGDAPPNGAARAEQ 618
Query: 750 SSDDDSSS---EDEKP 762
+++ + ED P
Sbjct: 619 AAESRGAPPPWEDIPP 634
>gnl|CDD|237081 PRK12372, PRK12372, ribonuclease III; Reviewed.
Length = 413
Score = 46.8 bits (111), Expect = 4e-05
Identities = 37/140 (26%), Positives = 53/140 (37%), Gaps = 17/140 (12%)
Query: 663 SAQTPKPAAAKKAESS-SDDDSSSEDEKPAVKAPAKPVA---------------HAAEPA 706
S + + AAA++A ++ + +++ PA + P+A AA+PA
Sbjct: 262 SPERKERAAAREARAAAAAPAATAAAAAPAEEPAVAPMAAIRAAHVETAADKGERAAKPA 321
Query: 707 AAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKA 766
AA KA D EK A K A KPA +SS D A +
Sbjct: 322 AADKAADKPAD-RPDAAEKAAEKPAEAAPRAADKPAGQAADPASSSADKPGASADAAART 380
Query: 767 PAKPVAQAAKPGDLSSQEAS 786
PA+ AA D AS
Sbjct: 381 PARARDAAAPDADTPPGGAS 400
Score = 39.5 bits (92), Expect = 0.008
Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 671 AAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKT 730
AAK A + D ++ A KA KP A AA AA K A ++D SSS D+ A
Sbjct: 317 AAKPAAADKAADKPADRPDAAEKAAEKP-AEAAPRAADKPAGQAADPASSSADKPGASAD 375
Query: 731 PAKPVAQAAKPAAAKKAESSSDDDSSS 757
A A+ AAA A++ S +
Sbjct: 376 AAARTPARARDAAAPDADTPPGGASLA 402
Score = 39.5 bits (92), Expect = 0.008
Identities = 48/166 (28%), Positives = 69/166 (41%), Gaps = 33/166 (19%)
Query: 659 EIVASAQTPKPAAAKKAESSSDDDSSSEDEK---PAVK---------APAKPVAHAAEPA 706
E++A+A P A K + S + +S E P VK +P + AA A
Sbjct: 219 EVMAAA----PMLAAKPKRSKNARASKHVEPEIVPGVKGVQEALDLRSPERKERAAAREA 274
Query: 707 AAKKAESSSDDDSSSEDEKPA-----------VKTPAKPVAQAAKPAAAKKA-ESSSD-- 752
A A ++ +++ E+PA V+T A +AAKPAAA KA + +D
Sbjct: 275 RAAAAAPAATAAAAAPAEEPAVAPMAAIRAAHVETAADKGERAAKPAAADKAADKPADRP 334
Query: 753 DDSSSEDEKPAVKAPA---KPVAQAAKPGDLSSQEASEKRSPNDFA 795
D + EKPA AP KP QAA P S+ +
Sbjct: 335 DAAEKAAEKPAEAAPRAADKPAGQAADPASSSADKPGASADAAART 380
>gnl|CDD|146273 pfam03546, Treacle, Treacher Collins syndrome protein Treacle.
Length = 519
Score = 46.8 bits (110), Expect = 4e-05
Identities = 38/122 (31%), Positives = 53/122 (43%), Gaps = 10/122 (8%)
Query: 662 ASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSS 721
A+ KP ++ SS +DS SE+E PA K P + P KA S+ +S
Sbjct: 13 TQAKAEKP---EEDSESSSEDSDSEEEMPAAKNPPQAKPSGKSPQV--KAASAPAKESPQ 67
Query: 722 EDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLS 781
+ P A P A A ++ SS+++S SE E P AQ AKP +
Sbjct: 68 KGAPPVTPGKAGPAA----AQAGEEEAKSSEEESDSEGETPTAATLTTSPAQ-AKPLGKN 122
Query: 782 SQ 783
SQ
Sbjct: 123 SQ 124
Score = 43.0 bits (100), Expect = 7e-04
Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Query: 690 PAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAES 749
PA P A A+ ++ SS +DS SE+E PA K P + P KA S
Sbjct: 2 PAPPGKTGPAATQAKAEKPEEDSESSSEDSDSEEEMPAAKNPPQAKPSGKSPQV--KAAS 59
Query: 750 SSDDDSSSEDEKPAVKAPAKPVA-QAAKPGDLSSQEASE 787
+ +S + P A P A QA + SS+E S+
Sbjct: 60 APAKESPQKGAPPVTPGKAGPAAAQAGEEEAKSSEEESD 98
Score = 39.9 bits (92), Expect = 0.006
Identities = 38/135 (28%), Positives = 53/135 (39%), Gaps = 27/135 (20%)
Query: 662 ASAQTPKPAAAKKAESSSDDDSSSEDEK-PAVKAPAKPVAHAAEPAAAK-----KAESSS 715
A+ T PA AK +S +S P+ K P A AA + +ESSS
Sbjct: 106 AATLTTSPAQAKPLGKNSQVRPASTVTPGPSGKGANLPCPQKAGSAAVQVGKQEDSESSS 165
Query: 716 DDDSSSEDE-------------------KPAVKTP--AKPVAQAAKPAAAKKAESSSDDD 754
+++S S+ PA P A PVA K K+ SS++
Sbjct: 166 EEESDSDGPGAPAQAKSSGKLLQARPASGPAKGPPQKAGPVATQVKAERGKEDSESSEES 225
Query: 755 SSSEDEKPAVKAPAK 769
S SE+E PA A+
Sbjct: 226 SDSEEEAPAAMTAAQ 240
Score = 38.7 bits (89), Expect = 0.015
Identities = 25/123 (20%), Positives = 48/123 (39%)
Query: 669 PAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAV 728
A ++ SS+++S SE E P A A + +S + +
Sbjct: 83 AQAGEEEAKSSEEESDSEGETPTAATLTTSPAQAKPLGKNSQVRPASTVTPGPSGKGANL 142
Query: 729 KTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEK 788
P K + A + + +ESSS+++S S+ +A + A+P ++ +K
Sbjct: 143 PCPQKAGSAAVQVGKQEDSESSSEEESDSDGPGAPAQAKSSGKLLQARPASGPAKGPPQK 202
Query: 789 RSP 791
P
Sbjct: 203 AGP 205
Score = 35.6 bits (81), Expect = 0.11
Identities = 28/108 (25%), Positives = 40/108 (37%), Gaps = 13/108 (12%)
Query: 671 AAKKAESSSDDDSSSEDEKPAVKA--------PAKPVAHAAEPAAAK-KAESSSDDDSSS 721
++ + ES SD + K + K PAK A P A + KAE +D SS
Sbjct: 163 SSSEEESDSDGPGAPAQAKSSGKLLQARPASGPAKGPPQKAGPVATQVKAERGKEDSESS 222
Query: 722 EDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAK 769
E+ + + A A AK A + +S P AK
Sbjct: 223 EESSDS----EEEAPAAMTAAQAKPALKTPQTKASPRKGTPITPTSAK 266
Score = 35.6 bits (81), Expect = 0.14
Identities = 41/136 (30%), Positives = 53/136 (38%), Gaps = 27/136 (19%)
Query: 665 QTPKPAAAK-KAESSSDD-DSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSE 722
Q P A + KAE +D +SS E +APA A A AK A + +S
Sbjct: 201 QKAGPVATQVKAERGKEDSESSEESSDSEEEAPA-----AMTAAQAKPALKTPQTKASPR 255
Query: 723 DEKPAVKTPAK--PV----------------AQAAKPAAAKKAESSSDDDSSSE--DEKP 762
P T AK PV A A+ PA A+ + +D SSSE + +
Sbjct: 256 KGTPITPTSAKVPPVRVGTPAPRKAGAVTSPACASSPALARGTQRPDEDSSSSEESESEE 315
Query: 763 AVKAPAKPVAQAAKPG 778
APA QA G
Sbjct: 316 EGTAPATARGQAKSVG 331
Score = 34.1 bits (77), Expect = 0.40
Identities = 31/137 (22%), Positives = 49/137 (35%), Gaps = 14/137 (10%)
Query: 658 PEIVASAQTPKPAAAKKAESSSDDDSSSEDE-------KPAVKAPAKPVAHAAEPAAAKK 710
P A A ++ SS+++S SE+ K +VK P A A K
Sbjct: 356 PGKTGPAVAQVKAEVQEDSESSEEESDSEEAAATPAQVKTSVKTPQAKANPAPTRAPPAK 415
Query: 711 AESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKP 770
+S+ + + ++PAK KP + +S + PAV
Sbjct: 416 GAASAPGKVVAAAAQAKQRSPAK-----VKPPV--RTLQNSTVSVRGQRSVPAVGKAVAA 468
Query: 771 VAQAAKPGDLSSQEASE 787
AQA ++E SE
Sbjct: 469 AAQAQPGPVKGTEEDSE 485
Score = 32.6 bits (73), Expect = 1.1
Identities = 27/115 (23%), Positives = 42/115 (36%), Gaps = 6/115 (5%)
Query: 660 IVASAQTPKPAAAKKAESSSDDDSSSE----DEKPAVKAPAKPVAHAAEPAAAKKAESSS 715
+ + A PA A+ + +D SSSE +E+ A A+ A + KA S
Sbjct: 283 VTSPACASSPALARGTQRPDEDSSSSEESESEEEGTAPATARGQAKSVGKGLQVKAASVP 342
Query: 716 DDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKP 770
+ P P K + +ESS ++ S +E A A K
Sbjct: 343 TKGPLGQGTAPVPPGKTGPAVAQVKAEVQEDSESSEEE--SDSEEAAATPAQVKT 395
Score = 31.0 bits (69), Expect = 3.8
Identities = 22/102 (21%), Positives = 35/102 (34%), Gaps = 6/102 (5%)
Query: 674 KAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDE------KPA 727
KA S + P P + + +ESS ++ S E K +
Sbjct: 337 KAASVPTKGPLGQGTAPVPPGKTGPAVAQVKAEVQEDSESSEEESDSEEAAATPAQVKTS 396
Query: 728 VKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAK 769
VKTP A A K +S+ + + ++PAK
Sbjct: 397 VKTPQAKANPAPTRAPPAKGAASAPGKVVAAAAQAKQRSPAK 438
Score = 30.6 bits (68), Expect = 4.4
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 661 VASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAE----PAAAKKAES-SS 715
A A+ PA K + + + S + +V A K VA AA+ P + +S SS
Sbjct: 428 AAQAKQRSPAKVKPPVRTLQNSTVSVRGQRSVPAVGKAVAAAAQAQPGPVKGTEEDSESS 487
Query: 716 DDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKA 747
+++S SE+E PA P+ Q +A K
Sbjct: 488 EEESDSEEETPAQIKPSGKTPQVRAASAPAKE 519
>gnl|CDD|234818 PRK00708, PRK00708, sec-independent translocase; Provisional.
Length = 209
Score = 44.0 bits (104), Expect = 1e-04
Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 5/95 (5%)
Query: 661 VASAQTPKPAAAKKAESSSDDDSSSEDEKPAV-KAPAKPVAHAAEPAAAKKAESSSDDDS 719
V P+ A + + +++ + A KAPAKP A + PAA + + +
Sbjct: 118 VEPMGLPETPPAVPVPAPAPAVAAAAAQAAAAPKAPAKPRAKSPRPAAKAAPKPTETITA 177
Query: 720 SSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDD 754
+K A AKK
Sbjct: 178 ----KKAKKTAAAPKPTADKTATPAKKTTKKKKTK 208
Score = 42.9 bits (101), Expect = 3e-04
Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 2/112 (1%)
Query: 676 ESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPV 735
+++S + ++E++ V P +P+ P A + +++ A K PAKP
Sbjct: 98 KATSMSEPATENKPAEVTTPVEPMGLPETPPAVPVPAPAPAVAAAAAQAAAAPKAPAKPR 157
Query: 736 AQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKP--VAQAAKPGDLSSQEA 785
A++ +PAA + + + + A P A K +A
Sbjct: 158 AKSPRPAAKAAPKPTETITAKKAKKTAAAPKPTADKTATPAKKTTKKKKTKA 209
Score = 41.0 bits (96), Expect = 0.001
Identities = 25/117 (21%), Positives = 35/117 (29%), Gaps = 12/117 (10%)
Query: 663 SAQTPKPAAA--KKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSS 720
A + A K AE ++ + E P P A AA A +
Sbjct: 98 KATSMSEPATENKPAEVTTPVEPMGLPETPPAVPVPAPAPAVAAAAAQAAAAPKAPAKPR 157
Query: 721 SEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKP 777
++ +PA K KP A K A + KP A P + K
Sbjct: 158 AKSPRPAAKAAPKPTETITAKKAKKTAAA----------PKPTADKTATPAKKTTKK 204
Score = 35.9 bits (83), Expect = 0.048
Identities = 18/77 (23%), Positives = 39/77 (50%)
Query: 712 ESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPV 771
+++S + ++E++ V TP +P+ P A + +++ A KAPAKP
Sbjct: 98 KATSMSEPATENKPAEVTTPVEPMGLPETPPAVPVPAPAPAVAAAAAQAAAAPKAPAKPR 157
Query: 772 AQAAKPGDLSSQEASEK 788
A++ +P ++ + +E
Sbjct: 158 AKSPRPAAKAAPKPTET 174
Score = 34.8 bits (80), Expect = 0.12
Identities = 23/101 (22%), Positives = 28/101 (27%), Gaps = 18/101 (17%)
Query: 642 LNVLPPTVLTRVSEYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAH 701
L PP V A+ P A K + S +PA KA KP
Sbjct: 123 LPETPPAVPVPAPAPAVAAAAAQAAAAPKAPAKPRAKS--------PRPAAKAAPKPTET 174
Query: 702 AAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPA 742
A K A + KP A P + K
Sbjct: 175 ITAKKAKKTAAA----------PKPTADKTATPAKKTTKKK 205
Score = 30.9 bits (70), Expect = 2.6
Identities = 20/98 (20%), Positives = 32/98 (32%), Gaps = 14/98 (14%)
Query: 694 APAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDD 753
+ ++P E ++ P A AA+ AAA KA
Sbjct: 101 SMSEPATENKPAEVTTPVEPMGLPETPPA--VPVPAPAPAVAAAAAQAAAAPKAP----- 153
Query: 754 DSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRSP 791
KP K+P +P A+AA + K++
Sbjct: 154 ------AKPRAKSP-RPAAKAAPKPTETITAKKAKKTA 184
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 618
Score = 44.7 bits (106), Expect = 2e-04
Identities = 31/149 (20%), Positives = 50/149 (33%), Gaps = 8/149 (5%)
Query: 649 VLTRVSEYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAA 708
VL R+ + P A A P ++ ++ + A APA A AA AA
Sbjct: 357 VLLRLLAFKPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAA 416
Query: 709 KKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPA 768
A + A A P A A AA + ++ E V+
Sbjct: 417 PPAAAPP--------APVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAP 468
Query: 769 KPVAQAAKPGDLSSQEASEKRSPNDFALW 797
+P +A P ++ A+ + +W
Sbjct: 469 EPAVASAAPAPAAAPAAARLTPTEEGDVW 497
Score = 41.2 bits (97), Expect = 0.003
Identities = 27/105 (25%), Positives = 32/105 (30%), Gaps = 12/105 (11%)
Query: 646 PPTVLTRVSEYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEP 705
P ASA PAAA A ++ PA APA A A
Sbjct: 395 AQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAA----------PAAAAPAAAPAAAPAA 444
Query: 706 AAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESS 750
A A + + P P VA AA AA A +
Sbjct: 445 VAL--APAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAAR 487
Score = 32.0 bits (73), Expect = 1.6
Identities = 27/116 (23%), Positives = 38/116 (32%), Gaps = 7/116 (6%)
Query: 697 KPVAHAAEPAAAKKAESSSDDDSSSE--DEKPAVKTPAKPVAQAAKPAAAKKAESSSDDD 754
KP A A A AE + + P + A P AA AAA +
Sbjct: 365 KPAAAAEAAAP---AEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAA 421
Query: 755 SSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRSPNDFALWKKSKAGEPWWSSP 810
+ PA APA A A ++ A ++ + A EP +S
Sbjct: 422 PPAPVAAPAAAAPAAAPAAAPAA--VALAPAPPAQAAPETVAIPVRVAPEPAVASA 475
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional.
Length = 1052
Score = 45.0 bits (106), Expect = 2e-04
Identities = 35/146 (23%), Positives = 50/146 (34%), Gaps = 10/146 (6%)
Query: 647 PTVLTRVSEYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPA 706
R + I Q PAA + + S+E AV A A A
Sbjct: 908 ANSARRDTMEIQNEQKPTQD-GPAAEAQPAQENTVVESAEKAVAAVSE----AAQQAATA 962
Query: 707 AAKKAESSSDDDSSSEDEKPAVKTPAKPVA---QAAKPAAAKKAESSSDDDSSSEDEK-P 762
A E + + + K A A + AK A AKKA + + +K
Sbjct: 963 VASGIEKVA-EAVRKTVRRSVKKAAATRAAMKKKVAKKAPAKKAAAKKAAAKKAAAKKKV 1021
Query: 763 AVKAPAKPVAQAAKPGDLSSQEASEK 788
A KAPAK VA+ + + A +
Sbjct: 1022 AKKAPAKKVARKPAAKKAAKKPARKA 1047
Score = 39.6 bits (92), Expect = 0.009
Identities = 34/132 (25%), Positives = 45/132 (34%), Gaps = 25/132 (18%)
Query: 647 PTVLTRVSEYIPEIVASAQTPKPAAAKKAESSSD---DDSSSEDEKPAVKAPAKPVAHA- 702
P V E + VA+ AA S + + + KA A A
Sbjct: 935 PAQENTVVESAEKAVAAVSEAAQQAATAVASGIEKVAEAVRKTVRRSVKKAAATRAAMKK 994
Query: 703 --AEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVA---QAAKPAAAKKAESSSDDDSSS 757
A+ A AKKA A K AK A + AK A AKK ++
Sbjct: 995 KVAKKAPAKKA--------------AAKKAAAKKAAAKKKVAKKAPAKKVARKPAAKKAA 1040
Query: 758 EDEKPAVKAPAK 769
+KPA KA +
Sbjct: 1041 --KKPARKAAGR 1050
Score = 38.4 bits (89), Expect = 0.020
Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 7/115 (6%)
Query: 634 EFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDEK-PAV 692
K +A ++ T V+ I ++ + + + KKA ++ +K PA
Sbjct: 944 SAEKAVAAVSEAAQQAATAVASGIEKVAEAVRKTVRRSVKKAAATRAAMKKKVAKKAPAK 1003
Query: 693 KAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKA 747
KA AK A A+ AAAKK + + KPA K AK + A+ AA +KA
Sbjct: 1004 KAAAKKAA--AKKAAAKKK-VAKKAPAKKVARKPAAKKAAK---KPARKAAGRKA 1052
Score = 33.8 bits (77), Expect = 0.50
Identities = 28/132 (21%), Positives = 44/132 (33%), Gaps = 18/132 (13%)
Query: 671 AAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKT 730
+ +A S+ D ++E KP A + S+E AV
Sbjct: 904 SGSEANSARRDTMEIQNE-------QKPTQDGPAAEAQ--PAQENTVVESAEKAVAAVSE 954
Query: 731 PAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRS 790
AQ A A A E ++ + KA A A K +++A K++
Sbjct: 955 ----AAQQAATAVASGIEKVAEA-VRKTVRRSVKKAAATRAAMKKK----VAKKAPAKKA 1005
Query: 791 PNDFALWKKSKA 802
A KK+ A
Sbjct: 1006 AAKKAAAKKAAA 1017
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 44.0 bits (104), Expect = 3e-04
Identities = 31/136 (22%), Positives = 52/136 (38%), Gaps = 3/136 (2%)
Query: 662 ASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHA---AEPAAAKKAESSSDDD 718
A+ + + A +++ + + K A A K A A AE AAKKA + +
Sbjct: 127 AALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKK 186
Query: 719 SSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPG 778
+ +E A K AK AA +A+ + ++ + K A +A A AA
Sbjct: 187 AEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKA 246
Query: 779 DLSSQEASEKRSPNDF 794
+ A +D
Sbjct: 247 AEKAAAAKAAAEVDDL 262
Score = 39.8 bits (93), Expect = 0.005
Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 7/120 (5%)
Query: 664 AQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAE---PAAAKKAESSSDDDSS 720
AQ K A + A+ ++ +E+ A AK A A AAAKKA + + +
Sbjct: 113 AQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAE 172
Query: 721 SE-DEKPAVKTPAKPVAQAAKPAAA---KKAESSSDDDSSSEDEKPAVKAPAKPVAQAAK 776
+E +K A + K A+AA AAA KKAE+ + +++E +K A A+AA
Sbjct: 173 AEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAA 232
Score = 38.2 bits (89), Expect = 0.017
Identities = 34/127 (26%), Positives = 50/127 (39%), Gaps = 16/127 (12%)
Query: 670 AAAKKAESSSDDDSSSEDEKPAV-----KAPAKPVAHAAEPAAAKKAESSSDDDSSSEDE 724
AAAKKA + + + +E K A KA A+ A AA A K + +
Sbjct: 158 AAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEA--------KK 209
Query: 725 KPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQE 784
K A + K A+A AA AE+ + + ++ A AA+ DL
Sbjct: 210 KAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAA---KAAEKAAAAKAAAEVDDLFGGL 266
Query: 785 ASEKRSP 791
S K +P
Sbjct: 267 DSGKNAP 273
Score = 37.5 bits (87), Expect = 0.033
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 57 KETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKK 97
K+ A+E AK A A+ AE E K+A AA + A EA+KK
Sbjct: 130 KQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKK 170
Score = 36.3 bits (84), Expect = 0.071
Identities = 19/46 (41%), Positives = 31/46 (67%)
Query: 52 VKLVDKETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKK 97
+K ++KE LA +++ K+ EA K A ++K+AE AAA+ A A+ K
Sbjct: 103 LKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAK 148
Score = 35.6 bits (82), Expect = 0.13
Identities = 18/47 (38%), Positives = 20/47 (42%)
Query: 51 AVKLVDKETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKK 97
A K E EAKR A A K A E KK A A + A+ K
Sbjct: 138 AAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAK 184
Score = 33.6 bits (77), Expect = 0.46
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 58 ETLAKEK---EAKRLAEAEKAAEKERKKAELAAAQEAKEAQKKIPPSEMFKMETD 109
E AK+K EAK+ A AE A + AE AA E A K + K +
Sbjct: 204 EAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAAAAKAAAE 258
Score = 33.2 bits (76), Expect = 0.55
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 686 EDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAA- 744
E E+ A + K AA+ AA K+ ++ ++ K + AK A AAK AAA
Sbjct: 107 EKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAE 166
Query: 745 --KKAESSSDDDSSSEDEKPAVKAPAKPVAQAAK 776
KKAE+ + +++E +K A A A AK
Sbjct: 167 AKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAK 200
Score = 33.2 bits (76), Expect = 0.70
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 57 KETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKK 97
K+ A E + K AEA+ AA K +A+ AA + A +
Sbjct: 208 KKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAE 248
Score = 33.2 bits (76), Expect = 0.72
Identities = 23/46 (50%), Positives = 28/46 (60%), Gaps = 6/46 (13%)
Query: 58 ETLAK--EKEAKRLAEAE---KAAEKERKKAELAAAQEAK-EAQKK 97
AK EAK+ AEAE KAA + +KKAE AA +A EA+KK
Sbjct: 157 AAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKK 202
Score = 32.9 bits (75), Expect = 0.73
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 62 KEKEAKRLAEAE---KAAEKERKKAELAAAQEAKEAQKK 97
EAK+ AEAE KAA + +KKAE A ++A KK
Sbjct: 179 AAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKK 217
Score = 32.9 bits (75), Expect = 0.90
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 57 KETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKK 97
K+ E + K AEA+K A E K A AA EAK A +K
Sbjct: 200 KKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEK 240
Score = 32.1 bits (73), Expect = 1.3
Identities = 27/93 (29%), Positives = 37/93 (39%), Gaps = 20/93 (21%)
Query: 661 VASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSS 720
+A A KKAE+ + +++E +K A A AK A A A AE
Sbjct: 189 AEAAAKAAAEAKKKAEAEAKKKAAAEAKKKA-AAEAKAAAAKAAAEAKAAAE-------- 239
Query: 721 SEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDD 753
A+AA+ AAA KA + DD
Sbjct: 240 -----------KAAAAKAAEKAAAAKAAAEVDD 261
Score = 31.3 bits (71), Expect = 2.2
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 57 KETLAKEKEAKRLAEAEKAAEKERKK--AELAAAQEAKEAQKK 97
K+ E AK AEA+K AE E KK A A + A EA+
Sbjct: 184 KKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAA 226
Score = 30.9 bits (70), Expect = 3.4
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 57 KETLAKEKEAKRLAEAEKAAEKERKK---AELAAAQEAKEAQKK 97
A E + K AEA+K A E KK AE AA A+ K
Sbjct: 192 AAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAK 235
Score = 30.5 bits (69), Expect = 4.6
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 57 KETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKK 97
++ A E+E + E E+ A +E+KK AA++A QK+
Sbjct: 93 QQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQ 133
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed.
Length = 1228
Score = 44.1 bits (105), Expect = 4e-04
Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 5/97 (5%)
Query: 677 SSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVA 736
S ++ A A A A AA+ AA + ++ KPA A A
Sbjct: 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAA-PPKPA----AAAAA 92
Query: 737 QAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQ 773
AA A A +++ ++ EDE ++ A VA+
Sbjct: 93 AAAPAAPPAAAAAAAPAAAAVEDEVTPLRGAAAAVAK 129
Score = 41.0 bits (97), Expect = 0.003
Identities = 21/98 (21%), Positives = 28/98 (28%), Gaps = 13/98 (13%)
Query: 686 EDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAK 745
D P A A AA AA+ A + + ++ P + A AAA
Sbjct: 34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAA 93
Query: 746 KAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQ 783
A A A A A AA +
Sbjct: 94 AA-------------PAAPPAAAAAAAPAAAAVEDEVT 118
Score = 39.9 bits (94), Expect = 0.008
Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 1/96 (1%)
Query: 654 SEYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPV-AHAAEPAAAKKAE 712
++Y P A+ AAA A + + ++ PA PA A +PAAA A
Sbjct: 34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAA 93
Query: 713 SSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAE 748
++ ++ + + AAA A+
Sbjct: 94 AAPAAPPAAAAAAAPAAAAVEDEVTPLRGAAAAVAK 129
Score = 37.9 bits (89), Expect = 0.030
Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 5/104 (4%)
Query: 634 EFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVK 693
EF D + PT + A+A K AA + ++ KPA
Sbjct: 31 EFFADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAA-PPKPAAA 89
Query: 694 APAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQ 737
A A A A A +++ ++ EDE ++ A VA+
Sbjct: 90 AAAAA----APAAPPAAAAAAAPAAAAVEDEVTPLRGAAAAVAK 129
Score = 37.9 bits (89), Expect = 0.030
Identities = 23/97 (23%), Positives = 29/97 (29%), Gaps = 11/97 (11%)
Query: 695 PAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDD 754
P A A AAA A S+ +++ P A AA P A A +
Sbjct: 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAA----- 92
Query: 755 SSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRSP 791
A AP A AA E + R
Sbjct: 93 ------AAAPAAPPAAAAAAAPAAAAVEDEVTPLRGA 123
>gnl|CDD|99897 cd05836, N_Pac_NP60, The PWWP domain is an essential part of the
cytokine-like nuclear factor n-pac protein, or NP60,
which enhances the activity of MAP2K4 and MAP2K6 kinases
to phosphorylate p38-alpha. In a variety of cell lines,
NP60 has been shown to localize to the nucleus. In
addition to the PWWP domain, NP60 also contains an
AT-hook and a C-terminal NAD-binding domain. The PWWP
domain, named for a conserved Pro-Trp-Trp-Pro motif, is
a small domain consisting of 100-150 amino acids. The
PWWP domain is found in numerous proteins that are
involved in cell division, growth and differentiation.
Most PWWP-domain proteins seem to be nuclear, often
DNA-binding proteins, that function as transcription
factors regulating a variety of developmental processes.
Length = 86
Score = 39.7 bits (93), Expect = 4e-04
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 187 GEVRGYPPWPARI--EGLADETPNRLK--YHIFFYGTRETGICRQDELFPYTEFKDKYGK 242
+++G+PPWP RI + P + +FF+G+ +++ + PY E K++ K
Sbjct: 9 AKMKGFPPWPGRIVKPPKDLKKPRGKAKCFFVFFFGSENHAWIKEENIKPYHEHKEEMIK 68
Query: 243 V 243
+
Sbjct: 69 L 69
>gnl|CDD|214603 smart00293, PWWP, domain with conserved PWWP motif. conservation
of Pro-Trp-Trp-Pro residues.
Length = 63
Score = 39.3 bits (92), Expect = 4e-04
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 187 GEVRGYPPWPARIEGLADETPNRLK-------YHIFFYGTRETGICRQDELFPYT 234
+++G+P WPA + N +K Y + F+G ++T +LFP T
Sbjct: 9 AKMKGFPWWPALVISPKMTPDNIMKRKSDENLYPVLFFGDKDTAWIPSSKLFPLT 63
>gnl|CDD|237082 PRK12373, PRK12373, NADH dehydrogenase subunit E; Provisional.
Length = 400
Score = 43.3 bits (102), Expect = 5e-04
Identities = 33/111 (29%), Positives = 44/111 (39%), Gaps = 8/111 (7%)
Query: 667 PKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKP 726
A KA + D+ + V A AA ++ A S D +
Sbjct: 203 KARYNASKALAEDIGDTVKRIDGTEVPLLAPWQGDAAPVPPSEAARPKSADAET----NA 258
Query: 727 AVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKP 777
A+KTPA AAK A A +A+ S ++ PA K AK A AAKP
Sbjct: 259 ALKTPATAPKAAAKNAKAPEAQPVSGTAAAE----PAPKEAAKAAAAAAKP 305
Score = 37.5 bits (87), Expect = 0.034
Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 7/95 (7%)
Query: 687 DEKPAVKA-PAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAK 745
D P + A+P + AE AA K + ++ A + AA+PA +
Sbjct: 237 DAAPVPPSEAARPKSADAETNAALKT--PATAPKAAAKNAKAPEAQPVSGTAAAEPAPKE 294
Query: 746 KAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDL 780
A++++ + ++KP A+P DL
Sbjct: 295 AAKAAAAAAKPALEDKPRPLGIARP----GGADDL 325
Score = 31.3 bits (71), Expect = 2.3
Identities = 27/103 (26%), Positives = 34/103 (33%), Gaps = 18/103 (17%)
Query: 658 PEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDD 717
P + A PK A A+ A+K PA A KA +
Sbjct: 240 PVPPSEAARPKSADAE--------------TNAALKTPATA---PKAAAKNAKA-PEAQP 281
Query: 718 DSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDE 760
S + +PA K AK A AAKPA K D+
Sbjct: 282 VSGTAAAEPAPKEAAKAAAAAAKPALEDKPRPLGIARPGGADD 324
Score = 30.5 bits (69), Expect = 4.0
Identities = 21/102 (20%), Positives = 33/102 (32%), Gaps = 4/102 (3%)
Query: 704 EPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPA 763
A KA + D+ + V A AA ++ A S D + A
Sbjct: 204 ARYNASKALAEDIGDTVKRIDGTEVPLLAPWQGDAAPVPPSEAARPKSADAET----NAA 259
Query: 764 VKAPAKPVAQAAKPGDLSSQEASEKRSPNDFALWKKSKAGEP 805
+K PA AAK + + + A + +KA
Sbjct: 260 LKTPATAPKAAAKNAKAPEAQPVSGTAAAEPAPKEAAKAAAA 301
>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau;
Validated.
Length = 647
Score = 43.7 bits (104), Expect = 5e-04
Identities = 28/149 (18%), Positives = 52/149 (34%), Gaps = 3/149 (2%)
Query: 661 VASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSS 720
ASAQ A A + P ++ AA++ + +
Sbjct: 378 AASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATK 437
Query: 721 SEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQA---AKP 777
++ +PA + A+PV A + A+ + S+ + + ++ E KA + A P
Sbjct: 438 AKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATP 497
Query: 778 GDLSSQEASEKRSPNDFALWKKSKAGEPW 806
L EK L ++ +PW
Sbjct: 498 KALKKALEHEKTPELAAKLAAEAIERDPW 526
>gnl|CDD|220684 pfam10310, DUF2413, Protein of unknown function (DUF2413). This is
a family of proteins conserved in fungi. The function is
not known.
Length = 436
Score = 43.2 bits (102), Expect = 6e-04
Identities = 19/114 (16%), Positives = 39/114 (34%)
Query: 657 IPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSD 716
+P+ A + PK A K + D+D ++ AKP E + +
Sbjct: 8 LPDEKAPTKKPKKGDASKDSTEDDEDILEFLDELEQSEKAKPPKKPKEASRPGTPRNPKK 67
Query: 717 DDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKP 770
+E + + ++A+ + +S + S E+E+P
Sbjct: 68 SSKPTESSAASSEEKPAKPRKSAESTRSSHPKSKAPSTESEEEEEPEETPDPIA 121
Score = 38.2 bits (89), Expect = 0.018
Identities = 30/133 (22%), Positives = 44/133 (33%), Gaps = 14/133 (10%)
Query: 687 DEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDS---SSEDEKPAVKTPAKPVAQAAKPAA 743
D P KAP K + A K + D+D E E+ P K +A++P
Sbjct: 6 DSLPDEKAPTKK----PKKGDASKDSTEDDEDILEFLDELEQSEKAKPPKKPKEASRPGT 61
Query: 744 AKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRSPNDF----ALWKK 799
+ + SS SS + PAKP A + + +
Sbjct: 62 PRNPKKSSKPTESSAASSE--EKPAKPRKSAESTRSSHPKSKAPSTESEEEEEPEETPDP 119
Query: 800 SKAGEPWWSSPWG 812
+ WWS WG
Sbjct: 120 IASIGGWWSL-WG 131
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 700
Score = 43.3 bits (102), Expect = 7e-04
Identities = 53/263 (20%), Positives = 78/263 (29%), Gaps = 34/263 (12%)
Query: 644 VLPPTVLTRVSEYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHA- 702
P + P A A PAA A PA A A+ VA A
Sbjct: 378 AAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAA--------------PAAAAAARAVAAAP 423
Query: 703 --AEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDE 760
PA A + PA A AA+PAAA ++ ++
Sbjct: 424 ARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARA 483
Query: 761 KPAVKAPAKPVAQAAKP-GDLSSQEASEKRSPND--FALWKKSKAGEPWWSSPWGEGRPG 817
PA A P P +L + AS + D A W +P + P
Sbjct: 484 APA--AAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETL 541
Query: 818 WHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLPTHDQEGKELSKGLAKKLK 877
+ +A P+ T V P + + D + L+ L +
Sbjct: 542 -----APAPAAAPAPRAAAATEPVVAPRP---PRASASGLPDMFDGDWPALAARLPVR-- 591
Query: 878 KLQLTQEKKYNEYIASVQKATLH 900
L Q+ +A V+ T+
Sbjct: 592 --GLAQQLARQSELAGVEGDTVR 612
Score = 34.5 bits (79), Expect = 0.28
Identities = 34/134 (25%), Positives = 45/134 (33%), Gaps = 15/134 (11%)
Query: 690 PAVKAP-AKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQA---AKPAAAK 745
A AP A+P AA PAAA A + ++ PA A+ VA A PA
Sbjct: 376 TAAAAPVAQPAPAAAAPAAAAPAPA---APPAAPAAAPAAAAAARAVAAAPARRSPAPEA 432
Query: 746 KAESSSDDDSSSEDEK-PAVKAPAKPVAQAAKPGDLSSQEASEKRSPNDFALWKKSKAGE 804
A + PA A P A A A+ R A ++A
Sbjct: 433 LAAARQASARGPGGAPAPAPAPAAAPAAAARPA-------AAGPRPVAAAAAAAPARAAP 485
Query: 805 PWWSSPWGEGRPGW 818
+P + P W
Sbjct: 486 AAAPAPADDDPPPW 499
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 42.6 bits (100), Expect = 7e-04
Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 6/126 (4%)
Query: 665 QTPKPAAAKKAESSSDDDSSSED-EKPAVKAPAKPVAHA---AEPAAAKKAESSSDDDSS 720
Q K AA +K ++ + ++ + K A AK A A A KAE+++ +
Sbjct: 137 QARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKA 196
Query: 721 SEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDL 780
+ K A + AK A KKAE+++++ +++E +K A KA A A AAK +
Sbjct: 197 EAEAKAAAEKAKA--EAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADKAAAAAKAAER 254
Query: 781 SSQEAS 786
+ A+
Sbjct: 255 KAAAAA 260
Score = 41.5 bits (97), Expect = 0.002
Identities = 33/134 (24%), Positives = 53/134 (39%), Gaps = 3/134 (2%)
Query: 662 ASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSS 721
A+ K AA +A + + + A KA + A A AA KKAE+ + +
Sbjct: 147 KKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEK 206
Query: 722 EDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKP---G 778
+ K A+ A+AA A + + + ++ A KA + A AA G
Sbjct: 207 AKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADKAAAAAKAAERKAAAAALDDIFG 266
Query: 779 DLSSQEASEKRSPN 792
LSS + + K
Sbjct: 267 GLSSGKNAPKTGGG 280
Score = 35.3 bits (81), Expect = 0.13
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 52 VKLVDKETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKK 97
+K ++KE L +++ K+ EAEK A+ E+K+ E A + A E +KK
Sbjct: 103 LKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKK 148
Score = 34.9 bits (80), Expect = 0.21
Identities = 13/47 (27%), Positives = 20/47 (42%)
Query: 48 RPSAVKLVDKETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEA 94
+ K ++ E K AE +KAA K + AAA+ A+
Sbjct: 209 AEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADKAAAAAKAAERK 255
Score = 34.5 bits (79), Expect = 0.23
Identities = 33/128 (25%), Positives = 52/128 (40%), Gaps = 10/128 (7%)
Query: 659 EIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDD 718
A+ + A A A+ ++ ++ + EK +A AK A AAA++
Sbjct: 176 AAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEE-------K 228
Query: 719 SSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDD---DSSSEDEKPAVKAPAKPVAQAA 775
+++E +K A K A A AAK A K A ++ DD SS P AK +
Sbjct: 229 AAAEKKKAAAKAKADKAAAAAKAAERKAAAAALDDIFGGLSSGKNAPKTGGGAKNASSQG 288
Query: 776 KPGDLSSQ 783
+S
Sbjct: 289 SGAAKNSG 296
Score = 33.0 bits (75), Expect = 0.72
Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 2/117 (1%)
Query: 686 EDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAK 745
+ E+ A KA A+ A A AE++ ++ + K + AK +A A A
Sbjct: 133 QQEEQARKAAAEQKKKAEAAKAKAAAEAAK--LKAAAEAKKKAEEAAKAAEEAKAKAEAA 190
Query: 746 KAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRSPNDFALWKKSKA 802
A+ ++ ++ + EK +A AK A+ + A+EK+ A K+ A
Sbjct: 191 AAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADKAAA 247
Score = 31.5 bits (71), Expect = 2.6
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 58 ETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKK 97
E AK K AEAE A+ E+K A + A E +K
Sbjct: 197 EAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKA 236
Score = 31.1 bits (70), Expect = 2.9
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 57 KETLAKEKEAKRLAEAEKAAEKERKKAEL---AAAQEAKEAQKK 97
+ EK+A+ AE + AAEK++ A+ AA AK A++K
Sbjct: 212 EAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADKAAAAAKAAERK 255
Score = 30.7 bits (69), Expect = 3.7
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Query: 56 DKETLAKEKEAKRLAEAE--KAAEKERKKAELAAAQEAKEAQKK 97
+++ A+ +AK AEA KAA + +KKAE AA+ A+EA+ K
Sbjct: 144 EQKKKAEAAKAKAAAEAAKLKAAAEAKKKAE-EAAKAAEEAKAK 186
Score = 30.3 bits (68), Expect = 5.3
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 51 AVKLVDKETLAKEKEAKRLAEAEKAAEKE-RKKAELAAAQEAKEAQKK 97
A + L EAK+ AE A +E + KAE AAA++ EA+ K
Sbjct: 154 AKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAK 201
Score = 30.3 bits (68), Expect = 5.6
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 61 AKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEA 94
A + K AEA+ AAEK + +AE A E K
Sbjct: 189 AAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAE 222
Score = 29.9 bits (67), Expect = 7.2
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 61 AKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKK 97
A+ AK+ AEAE A E+ KAE A +A++ +
Sbjct: 187 AEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEA 223
>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein;
Provisional.
Length = 357
Score = 42.6 bits (99), Expect = 8e-04
Identities = 46/144 (31%), Positives = 59/144 (40%), Gaps = 4/144 (2%)
Query: 662 ASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSS 721
A+A + AAAKKA + S S++ PA KA A P AA PA A A + + +
Sbjct: 195 AAAAAKQKAAAKKAAAPSGK-KSAKAAAPA-KAAAAPAKAAAPPAKAAAAPAKAAAAPAK 252
Query: 722 EDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLS 781
PA K A P AA PA A + + + PA KA A P AA P +
Sbjct: 253 AAAPPA-KAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPA-KAAAAPAKAAAAPAKAA 310
Query: 782 SQEASEKRSPNDFALWKKSKAGEP 805
+ A P A A P
Sbjct: 311 AAPAKAAAPPAKAAAPPAKAATPP 334
Score = 39.9 bits (92), Expect = 0.006
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 2/125 (1%)
Query: 662 ASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSS 721
A A P AAA A++++ ++ A APAK A A+ AAA A++++ ++
Sbjct: 217 AKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAK-AAAPPAKAAAPPAKAA 275
Query: 722 EDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLS 781
A PAK A AK AAA +++ +++ K A PAK A AK
Sbjct: 276 APPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAA-PPAKAAAPPAKAATPP 334
Query: 782 SQEAS 786
++ A+
Sbjct: 335 AKAAA 339
Score = 38.0 bits (87), Expect = 0.021
Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
Query: 663 SAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSE 722
+A P AAA A++++ ++ A PAK A A+ AAA A++++ ++
Sbjct: 232 AAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAK-AAAPPAKAAAPPAKAAA 290
Query: 723 DEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEK---PAVKAPAKPVAQAAKP 777
A PAK A AK AAA ++ +++ K P KA A P AA P
Sbjct: 291 PPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPPAKAAAAP 348
Score = 37.2 bits (85), Expect = 0.038
Identities = 37/124 (29%), Positives = 52/124 (41%), Gaps = 4/124 (3%)
Query: 686 EDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSS-SEDEKPAVKTPAKPVAQAAKPAAA 744
+D + A + A A A + AAAKKA + S S+ + A PAK A AK AAA
Sbjct: 183 KDRERARREDAAAAAAAKQKAAAKKAAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAA 242
Query: 745 KKAESSSDDDSSSEDEK---PAVKAPAKPVAQAAKPGDLSSQEASEKRSPNDFALWKKSK 801
+++ +++ K P KA A P AA P ++ A P A
Sbjct: 243 PAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKA 302
Query: 802 AGEP 805
A P
Sbjct: 303 AAAP 306
Score = 36.9 bits (84), Expect = 0.046
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 5/113 (4%)
Query: 663 SAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSE 722
+A P AAA A++++ ++ A PAK A A+ AA +++ +++
Sbjct: 246 AAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAA 305
Query: 723 DEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAA 775
K A PAK A AK AA ++ +++ P KA A PV + A
Sbjct: 306 PAK-AAAAPAKAAAPPAKAAAPPAKAATPPAKAAA----PPAKAAAAPVGKKA 353
>gnl|CDD|235571 PRK05704, PRK05704, dihydrolipoamide succinyltransferase;
Validated.
Length = 407
Score = 42.1 bits (100), Expect = 0.001
Identities = 30/122 (24%), Positives = 45/122 (36%), Gaps = 20/122 (16%)
Query: 648 TVLTRVSEYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAA 707
TV V + + I A AAA A +++ ++ + A A+ A PAA
Sbjct: 66 TVT--VGQVLGRIDEGAAAGAAAAAAAAAAAA----AAAPAQAQAAAAAEQSNDALSPAA 119
Query: 708 AKKAESSSDDDSS-----------SEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSS 756
K A + D S+ ED + A A A PAAA A + + +
Sbjct: 120 RKLAAENGLDASAVKGTGKGGRVTKED---VLAALAAAAAAPAAPAAAAPAAAPAPLGAR 176
Query: 757 SE 758
E
Sbjct: 177 PE 178
Score = 37.1 bits (87), Expect = 0.045
Identities = 29/111 (26%), Positives = 36/111 (32%), Gaps = 23/111 (20%)
Query: 696 AKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDS 755
A A AA AAA A ++ + A+ A PAA K A + D S
Sbjct: 80 AAAGAAAAAAAAAAAAAAAPA--------QAQAAAAAEQSNDALSPAARKLAAENGLDAS 131
Query: 756 S-----------SED----EKPAVKAPAKPVAQAAKPGDLSSQEASEKRSP 791
+ ED A APA P A A E+R P
Sbjct: 132 AVKGTGKGGRVTKEDVLAALAAAAAAPAAPAAAAPAAAPAPLGARPEERVP 182
>gnl|CDD|237182 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 559
Score = 42.3 bits (99), Expect = 0.001
Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 4/129 (3%)
Query: 652 RVSEYIPEIVASAQTPKPAAAKKAESS-SDDDSSSEDEKPAVKAPAKPVA--HAAEPAAA 708
R +E I EIVA++ + + E++ SD +++ PA +AP KP A HA +A
Sbjct: 33 RTAEGI-EIVAASNYDEELVQRALETARSDTPATAAAPAPAPQAPTKPAAPVHAPLKLSA 91
Query: 709 KKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPA 768
S +S+ ++ A +PV+ + AA ++S +++ A
Sbjct: 92 NANMSQRQRVASAAEDMIAAMALRQPVSVPRQAPAAAPVRAASIPSPAAQALAHAAAVRT 151
Query: 769 KPVAQAAKP 777
P + A
Sbjct: 152 APRQEHALS 160
Score = 34.6 bits (79), Expect = 0.29
Identities = 33/132 (25%), Positives = 46/132 (34%), Gaps = 24/132 (18%)
Query: 658 PEIVASAQTPKPAAAKKAESSSDDDSSSEDEK-PAVKAP--AKPVAHAAEPAAAKKAESS 714
V +A P PAA A +++ + ++ AV A + A P A +A
Sbjct: 127 AAPVRAASIPSPAAQALAHAAAVRTAPRQEHALSAVPEQLFADFLTTAPVPRAPVQAPVV 186
Query: 715 SDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPA----------- 763
+ PA A AA A A+ + DDD D+
Sbjct: 187 A----------APAPVPAIAAALAAHAAYAQDDDEQLDDDGFDLDDALPQILPPAALPPI 236
Query: 764 VKAPAKPVAQAA 775
V APA P A AA
Sbjct: 237 VVAPAAPAALAA 248
Score = 30.7 bits (69), Expect = 4.8
Identities = 30/143 (20%), Positives = 43/143 (30%), Gaps = 17/143 (11%)
Query: 661 VASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSS 720
VASA AA + S + + P A A AAA + + S
Sbjct: 101 VASAAEDMIAAMALRQPVSVPRQAPAAAPVRAASIPSPAAQALAHAAAVRTAPRQEHALS 160
Query: 721 SEDE--------KPAVKTPAK---------PVAQAAKPAAAKKAESSSDDDSSSEDEKPA 763
+ E V PV A AA A + DD+ +D
Sbjct: 161 AVPEQLFADFLTTAPVPRAPVQAPVVAAPAPVPAIAAALAAHAAYAQDDDEQLDDDGFDL 220
Query: 764 VKAPAKPVAQAAKPGDLSSQEAS 786
A + + AA P + + A
Sbjct: 221 DDALPQILPPAALPPIVVAPAAP 243
>gnl|CDD|236333 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau;
Validated.
Length = 709
Score = 42.0 bits (98), Expect = 0.001
Identities = 28/156 (17%), Positives = 47/156 (30%), Gaps = 29/156 (18%)
Query: 661 VASAQTPK----PAAAKKAESSS-----------DDDSSSEDEKPAVKAPAKPVAHAAEP 705
QT P+ K A S D ++ + AK + A+E
Sbjct: 404 QTPVQTASAAAMPSEGKTAGPVSNQENNDVPPWEDAPDEAQTAAGTAQTSAKSIQTASEA 463
Query: 706 AAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAA--------------KPAAAKKAESSS 751
+ + S + + +E + P + P++ QA PA
Sbjct: 464 ETPPENQVSKNKAADNETDAPLSEVPSENPIQATPNDEAVETETFAHEAPAEPFYGYGFP 523
Query: 752 DDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASE 787
D+D ED + A A G + +EA
Sbjct: 524 DNDCPPEDGAEIPPPDWEHAAPADTAGGGADEEAEA 559
Score = 41.6 bits (97), Expect = 0.002
Identities = 41/158 (25%), Positives = 61/158 (38%), Gaps = 19/158 (12%)
Query: 663 SAQTP-KPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSS 721
SAQT K AAKK + E + P + + AA P+ K A S+ +++
Sbjct: 381 SAQTAEKETAAKKPQPRP--------EAETAQTPVQTASAAAMPSEGKTAGPVSNQENN- 431
Query: 722 EDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVA---QAAKPG 778
D P P AA A S+ ++SE E P +K A + P
Sbjct: 432 -DVPPWEDAPD-EAQTAAGTAQT----SAKSIQTASEAETPPENQVSKNKAADNETDAPL 485
Query: 779 DLSSQEASEKRSPNDFALWKKSKAGEPWWSSPWGEGRP 816
E + +PND A+ ++ A E +G G P
Sbjct: 486 SEVPSENPIQATPNDEAVETETFAHEAPAEPFYGYGFP 523
Score = 37.0 bits (85), Expect = 0.055
Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 24/131 (18%)
Query: 664 AQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSED 723
A P AA+ A + ++ +E + P+ + K AAKK +
Sbjct: 357 AFAPLAAASCDANAVIEN---TELQSPSAQTAEKE-------TAAKKPQPRP-------- 398
Query: 724 EKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSS- 782
E +TP + + AA P+ K A S+ +++ D P AP AA S+
Sbjct: 399 EAETAQTPVQTASAAAMPSEGKTAGPVSNQENN--DVPPWEDAPD-EAQTAAGTAQTSAK 455
Query: 783 --QEASEKRSP 791
Q ASE +P
Sbjct: 456 SIQTASEAETP 466
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 42.1 bits (99), Expect = 0.001
Identities = 35/164 (21%), Positives = 50/164 (30%), Gaps = 15/164 (9%)
Query: 658 PEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDD 717
P ++ + A + ++ SS E+ A +P + PAAA
Sbjct: 152 PPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSS 211
Query: 718 DSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSE----DEKPAVKAPAKPVAQ 773
S+ PA PA +AA A +SS D SSSE P + P A
Sbjct: 212 PISASASSPA---PAPG------RSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAP 262
Query: 774 AAKPGDLSSQEASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPG 817
P + S S + S PG
Sbjct: 263 ITLPTRIWEASGWNGPSSR--PGPASSSSSPRERSPSPSPSSPG 304
Score = 40.9 bits (96), Expect = 0.003
Identities = 25/132 (18%), Positives = 41/132 (31%), Gaps = 9/132 (6%)
Query: 658 PEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDD 717
P + A +++ +SS P+ P+ P + A + + SSS
Sbjct: 266 PTRIWEASGWNGPSSRPGPASSSSSPRERSPSPS---PSSPGSGPAPSSPRASSSSSSSR 322
Query: 718 DSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAK---PVAQA 774
+SSS + A P + S D K P P + A
Sbjct: 323 ESSSSSTSS---SSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPA 379
Query: 775 AKPGDLSSQEAS 786
A G + + A
Sbjct: 380 ASAGRPTRRRAR 391
Score = 39.8 bits (93), Expect = 0.009
Identities = 37/190 (19%), Positives = 53/190 (27%), Gaps = 40/190 (21%)
Query: 666 TPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKP--------------------VAHAAEP 705
T PA+ + S + SS D P PA P A+ P
Sbjct: 94 TLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPP 153
Query: 706 AA-AKKAESSSDDDSSS---------EDEKPAVKTPAKPVAQAAKPAAAKKAE------- 748
AA A A +SD SS E+ A +P + PAAA
Sbjct: 154 AAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPI 213
Query: 749 -SSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRSPNDFALWKKSKAGEPWW 807
+S+ + + A A A + ++ E P W
Sbjct: 214 SASASSPAPAPGRSAADDAGASS-SDSSSSESSGCGWGPENECPLPRPAPITLP-TRIWE 271
Query: 808 SSPWGEGRPG 817
+S W
Sbjct: 272 ASGWNGPSSR 281
Score = 39.4 bits (92), Expect = 0.012
Identities = 36/169 (21%), Positives = 49/169 (28%), Gaps = 19/169 (11%)
Query: 658 PEIVASAQTPKPAAAKKAE----SSSDDDSSSEDE------------KPAVKAPAKPVAH 701
I ASA +P PA + A +SS D SSSE
Sbjct: 211 SPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIW 270
Query: 702 AAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEK 761
A + SSS E+ +P+ P + A + + SSS S
Sbjct: 271 EASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSS---SRESSSS 327
Query: 762 PAVKAPAKPVAQAAKPGDLSSQEASEKRSPNDFALWKKSKAGEPWWSSP 810
+ A PG S+ S R P K P +
Sbjct: 328 STSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPS 376
Score = 38.6 bits (90), Expect = 0.017
Identities = 28/168 (16%), Positives = 52/168 (30%), Gaps = 24/168 (14%)
Query: 662 ASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPA-AAKKAESSSDDDSS 720
+ +P+ +++ + S S+S + + A P P+ + + D S
Sbjct: 307 PAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSP---GPSPSRSPSPSRPPPPADPS 363
Query: 721 SEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDL 780
S ++P A +A ++A ++ + D A +
Sbjct: 364 SPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPLDAGAAS 423
Query: 781 SSQEASEKRSPNDFALWKKSKAGEPWWSSP-------W----GEGRPG 817
+ A P GEPW SP G+ RPG
Sbjct: 424 GAFYARY---PLLTPS------GEPWPGSPPPPPGRVRYGGLGDSRPG 462
Score = 38.6 bits (90), Expect = 0.018
Identities = 31/154 (20%), Positives = 48/154 (31%), Gaps = 13/154 (8%)
Query: 650 LTRVSEYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAH--AAEPAA 707
+T P +V + A + AE SS A + A AA
Sbjct: 753 ITDALFSNPSLVPAKLAEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAA 812
Query: 708 AKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDD--------SSSED 759
++ A S + D PA+P AA+P A+ +ESS +
Sbjct: 813 SRTASKRKSR-SHTPDGGSESSGPARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGR 871
Query: 760 EKPAVKAPAKPVAQAAKPGDLSSQ--EASEKRSP 791
+P P AA P ++ + P
Sbjct: 872 RRPRPPEPRARPGAAAPPKAAAAAPPAGAPAPRP 905
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 41.9 bits (98), Expect = 0.002
Identities = 25/120 (20%), Positives = 42/120 (35%), Gaps = 8/120 (6%)
Query: 676 ESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPV 735
S+S +D ++K + + PAKP E + + E + ++ S+ K K
Sbjct: 290 SSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKG----KKLKKLK 345
Query: 736 AQAAKPAAAKKAESSSDDDSSSEDEK--PAVKAPAKPVAQAAKPGD--LSSQEASEKRSP 791
+ DDS + E V A + + +P D SS S P
Sbjct: 346 GKKNGLDKDDSDSGDDSDDSDIDGEDSVSLVTAKKQKEPKKEEPVDSNPSSPGNSGPARP 405
Score = 34.2 bits (78), Expect = 0.36
Identities = 26/147 (17%), Positives = 39/147 (26%), Gaps = 22/147 (14%)
Query: 659 EIVASAQTPKPAAAKKAESSSDDDSSSEDE-----KPAVKAPAKPVAHAAEPAAAKKAES 713
E S + P ++ E S + + +E K K K
Sbjct: 301 EDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLK-KLKGKKNGLDKDDSDSG 359
Query: 714 SSDDDSSSEDE---------KPAVKTPAKPVAQA-AKPAAAKKAESSSDDDSSS------ 757
DDS + E K +PV + P + A S +
Sbjct: 360 DDSDDSDIDGEDSVSLVTAKKQKEPKKEEPVDSNPSSPGNSGPARPSPESKDKGKRKAAN 419
Query: 758 EDEKPAVKAPAKPVAQAAKPGDLSSQE 784
E K PAK + P S +
Sbjct: 420 EVSKSPASVPAKKLKTENAPKSSSGKS 446
>gnl|CDD|235665 PRK05996, motB, flagellar motor protein MotB; Validated.
Length = 423
Score = 40.8 bits (96), Expect = 0.003
Identities = 22/126 (17%), Positives = 33/126 (26%), Gaps = 9/126 (7%)
Query: 663 SAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSE 722
S Q A + + + A APA A P A K ++
Sbjct: 187 SKQVEVTTAGDLLPPGQAREQAQGAKS-ATAAPATVPQAAPLPQAQPKK--------AAT 237
Query: 723 DEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSS 782
+E+ + A AA DD E E+ A K + +
Sbjct: 238 EEELIADAKKAATGEPAANAAKAAKPEPMPDDQQKEAEQLQAAIAQAIGGVAGKLAEGVT 297
Query: 783 QEASEK 788
E
Sbjct: 298 VTPVEG 303
Score = 38.1 bits (89), Expect = 0.020
Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 4/98 (4%)
Query: 693 KAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSD 752
+ P A++ + +++ PA A P+ QA AA + E +D
Sbjct: 189 QVEVTTAGDLLPPGQAREQAQGAKSATAA----PATVPQAAPLPQAQPKKAATEEELIAD 244
Query: 753 DDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRS 790
++ E A A A +++ +
Sbjct: 245 AKKAATGEPAANAAKAAKPEPMPDDQQKEAEQLQAAIA 282
Score = 35.8 bits (83), Expect = 0.10
Identities = 12/94 (12%), Positives = 31/94 (32%), Gaps = 1/94 (1%)
Query: 660 IVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSD-DD 718
P A + + S + + + A A+P A E A+ ++ +
Sbjct: 194 TAGDLLPPGQAREQAQGAKSATAAPATVPQAAPLPQAQPKKAATEEELIADAKKAATGEP 253
Query: 719 SSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSD 752
+++ + + + A+ A A++
Sbjct: 254 AANAAKAAKPEPMPDDQQKEAEQLQAAIAQAIGG 287
>gnl|CDD|183756 PRK12799, motB, flagellar motor protein MotB; Reviewed.
Length = 421
Score = 40.9 bits (95), Expect = 0.003
Identities = 27/113 (23%), Positives = 43/113 (38%), Gaps = 6/113 (5%)
Query: 668 KPAAAKKAESSSDDDSSSEDEKPAVKAPAK-PVAHAAEPAAAKKAE----SSSDDDSSSE 722
P AA S+ S+ A+ +PA P + + A +A SS+ S
Sbjct: 299 VPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGVLPSDV 358
Query: 723 DEKPAVKTPA-KPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQA 774
V PA +PV +P + + + SS + +S P PA P +
Sbjct: 359 TLPGTVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPTTSLPAAPASNI 411
Score = 29.7 bits (66), Expect = 8.0
Identities = 24/117 (20%), Positives = 40/117 (34%), Gaps = 14/117 (11%)
Query: 646 PPTVLTRVSEYIPE----IVASAQTPKPAAAKKA---ESSSDDDSSSEDEKPAVKAPAKP 698
P+ S I I + A P + A ++S+ SS+ V P
Sbjct: 305 TPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGVLPSDVTLPGTV 364
Query: 699 VAHAAE-------PAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAE 748
AAE P + + + SS + +S P PA P + ++ A+
Sbjct: 365 ALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPTTSLPAAPASNIPVSPTSRDAQ 421
>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase;
Provisional.
Length = 418
Score = 40.4 bits (95), Expect = 0.004
Identities = 15/68 (22%), Positives = 22/68 (32%)
Query: 685 SEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAA 744
P APA A AE +K ++++ KP AKP A
Sbjct: 119 DTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPP 178
Query: 745 KKAESSSD 752
+ +D
Sbjct: 179 PTPVARAD 186
Score = 38.9 bits (91), Expect = 0.013
Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 8/94 (8%)
Query: 684 SSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAA 743
+ E + V AP + P AA A +++ + EKP P A+KP
Sbjct: 103 AEEGDTVEVGAPLSEIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTP 162
Query: 744 AKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKP 777
A+ + PA K P PVA+A
Sbjct: 163 PAAAK--------PPEPAPAAKPPPTPVARADPR 188
Score = 36.2 bits (84), Expect = 0.072
Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 8/76 (10%)
Query: 666 TPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEK 725
P AA A +++ + EKP AP A++P A+ +
Sbjct: 121 GGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAK--------PPEPA 172
Query: 726 PAVKTPAKPVAQAAKP 741
PA K P PVA+A
Sbjct: 173 PAAKPPPTPVARADPR 188
>gnl|CDD|99896 cd05835, Dnmt3b_related, The PWWP domain is an essential component
of DNA methyltransferase 3 B (Dnmt3b) which is
responsible for establishing DNA methylation patterns
during embryogenesis and gametogenesis. In
tumorigenesis, DNA methylation by Dnmt3b is known to
play a role in the inactivation of tumor suppressor
genes. In addition, a point mutation in the PWWP domain
of Dnmt3b has been identified in patients with ICF
syndrome (immunodeficiency, centromeric instability, and
facial anomalies), a rare autosomal recessive disorder
characterized by hypomethylation of classical satellite
DNA. The PWWP domain, named for a conserved
Pro-Trp-Trp-Pro motif, is a small domain consisting of
100-150 amino acids. The PWWP domain is found in
numerous proteins that are involved in cell division,
growth and differentiation. Most PWWP-domain proteins
seem to be nuclear, often DNA-binding, proteins that
function as transcription factors regulating a variety
of developmental processes.
Length = 87
Score = 36.6 bits (85), Expect = 0.005
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 187 GEVRGYPPWPAR---IEGLADETPNRLKYHIFFYGTRETGICRQDELFPYTEFKDKY 240
G+++G+P WP R I + P + ++G+ D+L P++EF +
Sbjct: 9 GKIKGFPWWPGRVVSITVTSKRPPVVGMRWVTWFGSGTFSEVSVDKLSPFSEFFKAF 65
>gnl|CDD|216860 pfam02063, MARCKS, MARCKS family.
Length = 296
Score = 39.4 bits (91), Expect = 0.005
Identities = 38/142 (26%), Positives = 53/142 (37%), Gaps = 11/142 (7%)
Query: 664 AQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSED 723
A+ AA K+ ++ E A A AA E ++D + +
Sbjct: 164 AEAEGAAAEKEGAKEEAAAAAPEAGSGEEAAAPGEEAGAAGAEGEAGEEPAADAEPEQPE 223
Query: 724 EKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQ 783
KP P KP A+ AK A +KAE EKPA +A A AQ A + +
Sbjct: 224 AKPEEAAPEKPQAEEAKAAEEQKAE-----------EKPAEEAGASSAAQEAPAAEQEAA 272
Query: 784 EASEKRSPNDFALWKKSKAGEP 805
A E +P A + S P
Sbjct: 273 PAEEPAAPPQEACSESSPEAPP 294
Score = 34.4 bits (78), Expect = 0.21
Identities = 26/119 (21%), Positives = 55/119 (46%), Gaps = 14/119 (11%)
Query: 662 ASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPA---KPVAHAAEPAAAKKAESSSDDD 718
A+A P+ + ++A + ++ ++ E A + PA +P A+P A + +++
Sbjct: 180 AAAAAPEAGSGEEAAAPGEEAGAAGAEGEAGEEPAADAEPEQPEAKPEEAAPEKPQAEEA 239
Query: 719 SSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKP 777
++E++K KP +A +AA++A ++E E + PA P +A
Sbjct: 240 KAAEEQKAE----EKPAEEAGASSAAQEA-------PAAEQEAAPAEEPAAPPQEACSE 287
Score = 34.4 bits (78), Expect = 0.24
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 672 AKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDD---SSSEDEKPAV 728
E ++D + + KP AP KP A A+ A +KAE ++ SS+ E PA
Sbjct: 208 EAGEEPAADAEPEQPEAKPEEAAPEKPQAEEAKAAEEQKAEEKPAEEAGASSAAQEAPAA 267
Query: 729 KTPAKPVAQAAKPAAAKKAESSSDDDSS 756
+ A P + A P +ESS + +
Sbjct: 268 EQEAAPAEEPAAPPQEACSESSPEAPPA 295
Score = 32.9 bits (74), Expect = 0.68
Identities = 33/144 (22%), Positives = 53/144 (36%), Gaps = 4/144 (2%)
Query: 663 SAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSE 722
A + A K+A +S++ D + +PA PA P E A ++ S
Sbjct: 73 EAASAAAAEEKEAAASTEPDKEPAEAEPA--EPASPAEAEGEA-ATSTEKAEDGATPSPS 129
Query: 723 DEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAP-AKPVAQAAKPGDLS 781
E P K ++ K + ++ + +E E A + AK A AA P S
Sbjct: 130 SETPKKKKKRFSFKKSFKLSGFSFKKNKKEAGEGAEAEGAAAEKEGAKEEAAAAAPEAGS 189
Query: 782 SQEASEKRSPNDFALWKKSKAGEP 805
+EA+ A + EP
Sbjct: 190 GEEAAAPGEEAGAAGAEGEAGEEP 213
Score = 32.1 bits (72), Expect = 1.4
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Query: 670 AAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVK 729
A+ AE+ + ++ + PA + K A +A A K+A +S++ D + +PA
Sbjct: 45 ASPAAAEAGAKEELQANGSAPA-EETGKEEAASAAAAEEKEAAASTEPDKEPAEAEPA-- 101
Query: 730 TPAKPVAQAAKPA-AAKKAESSSDDDSSSEDEKPAVK 765
PA P + A + +KAE + SSE K K
Sbjct: 102 EPASPAEAEGEAATSTEKAEDGATPSPSSETPKKKKK 138
>gnl|CDD|237034 PRK12278, PRK12278, 50S ribosomal protein L21/unknown domain fusion
protein; Provisional.
Length = 221
Score = 39.1 bits (91), Expect = 0.006
Identities = 30/125 (24%), Positives = 45/125 (36%), Gaps = 8/125 (6%)
Query: 657 IPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSD 716
I EI+AS A + + + K A K A A A AAA A +++
Sbjct: 98 ITEILASGADASGVKAATGAGKVEVAAEAAPAK-AKKEAAPKAAPAPAAAAAPPAAAAAG 156
Query: 717 DDSSSED----EKPAVKTPAKPVAQAAKPAAAKKAESSSDDDS---SSEDEKPAVKAPAK 769
D ++ A K V A+ AA A+ + D+ EK AK
Sbjct: 157 ADDLTKITGVGPALAKKLNEAGVTTFAQIAALTDADIAKIDEKLSFKGRIEKDGWIEQAK 216
Query: 770 PVAQA 774
+A+
Sbjct: 217 ELAKG 221
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 39.8 bits (94), Expect = 0.007
Identities = 25/153 (16%), Positives = 54/153 (35%)
Query: 651 TRVSEYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKK 710
RV E E+ S++ + S+ E+E+ + + A+ A +
Sbjct: 4 VRVYELAKELGVSSKELLEKLKELGIEVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEA 63
Query: 711 AESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKP 770
A + +++++ +E A A A AA+ AA + ++ ++ A KA K
Sbjct: 64 AAAEAEEEAKAEAAAAAPAEEAAEAAAAAEAAARPAEDEAARPAEAAARRPKAKKAAKKK 123
Query: 771 VAQAAKPGDLSSQEASEKRSPNDFALWKKSKAG 803
K + A + ++ +
Sbjct: 124 KGPKPKKKKPKRKAARGGKRGKGGKGRRRRRGR 156
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 39.5 bits (92), Expect = 0.011
Identities = 31/124 (25%), Positives = 44/124 (35%), Gaps = 18/124 (14%)
Query: 683 SSSED----EKPAVKAP-----AKPVAHAAEPAAAKKAESSSDDDSSSEDEKPA-VKTPA 732
SS ED +A + HAA P A DD + PA V TPA
Sbjct: 363 SSLEDLSAGRHHPKRASLPTRKRRSARHAATPFARG---PGGDDQTRPAAPVPASVPTPA 419
Query: 733 KPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPG-DLSSQEA----SE 787
A+ P S++ S P + P P + A D ++++A E
Sbjct: 420 PTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDDATRKALDALRE 479
Query: 788 KRSP 791
+R P
Sbjct: 480 RRPP 483
Score = 36.1 bits (83), Expect = 0.12
Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 9/136 (6%)
Query: 646 PPTVLTRVS--EYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAA 703
PP+ L +S + P+ + + +A A + + +PA PA A
Sbjct: 361 PPSSLEDLSAGRHHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAP 420
Query: 704 EPAAAKKAESSSDDDSSSE---DEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDE 760
P A + S+E D+ PA +P A A +PA +++ + +
Sbjct: 421 TPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDDATRKALDALRER 480
Query: 761 KPAVKAPAKPVAQAAK 776
+P P P A A+
Sbjct: 481 RP----PEPPGADLAE 492
Score = 33.4 bits (76), Expect = 0.72
Identities = 28/118 (23%), Positives = 38/118 (32%), Gaps = 10/118 (8%)
Query: 662 ASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSS 721
+ TP P A +S ++ PA P A A +
Sbjct: 2715 LVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPA------ 2768
Query: 722 EDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSE--DEKPAVKAPAKPVAQAAKP 777
P A P + +PA A +ES S + D AV APA + AA P
Sbjct: 2769 --PAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASP 2824
Score = 33.4 bits (76), Expect = 0.78
Identities = 30/141 (21%), Positives = 56/141 (39%), Gaps = 6/141 (4%)
Query: 640 ADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPV 699
D +V PP R SE P + + A+ P A + A + D + PA +P P
Sbjct: 2564 PDRSVPPPRPAPRPSE--PAVTSRARRPD-APPQSARPRAPVDDRGDPRGPAPPSPLPPD 2620
Query: 700 AHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVA--QAAKPAAAKKAESSSDDDSSS 757
HA +P + ++++ D P + P A + ++P A++ ++ S
Sbjct: 2621 THAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPP 2680
Query: 758 ED-EKPAVKAPAKPVAQAAKP 777
+ + A + + A P
Sbjct: 2681 QRPRRRAARPTVGSLTSLADP 2701
Score = 33.0 bits (75), Expect = 1.1
Identities = 32/133 (24%), Positives = 40/133 (30%), Gaps = 6/133 (4%)
Query: 645 LPPTVLTRVSEYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAE 704
PTV + S P P P A A S+ +PA P A A
Sbjct: 2688 ARPTVGSLTSLADP----PPPPPTPEPAPHALVSATPLPPGPAAARQ-ASPALPAAPAPP 2742
Query: 705 PAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAV 764
A A + PA P A AA P + + S S + P+
Sbjct: 2743 AVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVA-SLSESRESLPSP 2801
Query: 765 KAPAKPVAQAAKP 777
PA P A P
Sbjct: 2802 WDPADPPAAVLAP 2814
Score = 32.6 bits (74), Expect = 1.4
Identities = 20/95 (21%), Positives = 27/95 (28%), Gaps = 6/95 (6%)
Query: 689 KPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAV------KTPAKPVAQAAKPA 742
+ A + + A+P + S P +PA P A A
Sbjct: 2685 RRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAV 2744
Query: 743 AAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKP 777
A A + APA P A AA P
Sbjct: 2745 PAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGP 2779
Score = 31.4 bits (71), Expect = 2.7
Identities = 19/119 (15%), Positives = 33/119 (27%), Gaps = 1/119 (0%)
Query: 658 PEIVASAQTPKPAAAKKAESSSDDDSSSED-EKPAVKAPAKPVAHAAEPAAAKKAESSSD 716
+ + Q P+ AA+ S + AP V+ P A +S
Sbjct: 2674 AQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASP 2733
Query: 717 DDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAA 775
++ PA P A A + ++ P + VA +
Sbjct: 2734 ALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLS 2792
Score = 31.4 bits (71), Expect = 2.7
Identities = 20/120 (16%), Positives = 35/120 (29%)
Query: 662 ASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSS 721
+ A PA + + +P A A A PAA + +S
Sbjct: 2732 SPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASL 2791
Query: 722 EDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLS 781
+ + ++ +P P A A A + + + + A P P L
Sbjct: 2792 SESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLP 2851
Score = 29.9 bits (67), Expect = 8.9
Identities = 33/162 (20%), Positives = 46/162 (28%), Gaps = 16/162 (9%)
Query: 646 PPTVLTRVS-EYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAE 704
PP LTR + + E S +P A A + + PA P A
Sbjct: 2779 PPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTA 2838
Query: 705 PAAAKKAESSSD----------DDSSSEDEKPAVKTPAKP----VAQAAKPAAAKKAES- 749
P S D + PA P V + A+PA ++ ES
Sbjct: 2839 PPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESF 2898
Query: 750 SSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRSP 791
+ D +P P +P Q P R
Sbjct: 2899 ALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQ 2940
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 38.8 bits (91), Expect = 0.012
Identities = 24/131 (18%), Positives = 38/131 (29%), Gaps = 6/131 (4%)
Query: 658 PEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDD 717
E+ A + K A+S S + E+ K A+++ K +
Sbjct: 8 AELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSG------ 61
Query: 718 DSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKP 777
D+ P K AAK AAAK D +K K
Sbjct: 62 MVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYV 121
Query: 778 GDLSSQEASEK 788
D+ ++
Sbjct: 122 KDIDVLNQADD 132
Score = 36.1 bits (84), Expect = 0.089
Identities = 23/116 (19%), Positives = 37/116 (31%), Gaps = 6/116 (5%)
Query: 662 ASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSS 721
+ K A K A DD + +D +A + + DD+
Sbjct: 98 DELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDD 157
Query: 722 EDEK-PAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVK-----APAKPV 771
ED+ V + +A + + D+ SE + A K A A PV
Sbjct: 158 EDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQARKDAKLTATADPV 213
Score = 33.0 bits (76), Expect = 0.75
Identities = 15/166 (9%), Positives = 41/166 (24%), Gaps = 19/166 (11%)
Query: 662 ASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSS 721
+ + K A K ++ D VK K A ++ + +
Sbjct: 33 ITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPA 92
Query: 722 EDEKPAVKTPAKPVAQAAKPAAAKKAESSSD--------------DDSSSEDEKPAVKAP 767
+ + +K + D DD +D+
Sbjct: 93 KKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDD 152
Query: 768 AKPVAQAAKPGDLSSQEASEKRSPNDFALWKKSKAGEPWWSSPWGE 813
+ + D+ ++ +K + + + + + +
Sbjct: 153 DEDDDEDDDDDDVDDEDEEKKEAKEL-----EKLSDDDDFVWDEDD 193
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 39.3 bits (92), Expect = 0.012
Identities = 31/192 (16%), Positives = 64/192 (33%), Gaps = 5/192 (2%)
Query: 572 TDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLDSLHGSSITDNSIFATLPKHW 631
+ + K +++ + + D + D + +S+ K
Sbjct: 1189 SKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKN 1248
Query: 632 EAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAAKKAESSSD-DDSSSEDEKP 690
+ + D + P+ V++ Q P +K+ + S+ S K
Sbjct: 1249 NSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKK 1308
Query: 691 AVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESS 750
VK + A KK+E + S+ + A ++ + KK++SS
Sbjct: 1309 KVKKRLEGSL--AALKKKKKSEKKTARKKKSKTRVK--QASASQSSRLLRRPRKKKSDSS 1364
Query: 751 SDDDSSSEDEKP 762
S+DD SE +
Sbjct: 1365 SEDDDDSEVDDS 1376
>gnl|CDD|177618 PHA03381, PHA03381, tegument protein VP22; Provisional.
Length = 290
Score = 38.5 bits (89), Expect = 0.012
Identities = 36/127 (28%), Positives = 50/127 (39%), Gaps = 15/127 (11%)
Query: 682 DSSSEDEKPAVKAP-----AKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVA 736
SSSEDE+PA P A+P A PA + + S E P+ + P P
Sbjct: 76 GSSSEDERPADPRPSRRPHAQPEASGPGPARGARGPAGS-RGRGRRAESPSPRDPPNP-- 132
Query: 737 QAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRSPNDFAL 796
K A+A + S+ DS++ + PA AP + A L A + A
Sbjct: 133 ---KGASAPRGRKSACADSAALLDAPAPAAPKRQKTPAGLARKLHFSTA----PTSPTAP 185
Query: 797 WKKSKAG 803
W AG
Sbjct: 186 WTPRVAG 192
>gnl|CDD|183558 PRK12495, PRK12495, hypothetical protein; Provisional.
Length = 226
Score = 37.9 bits (88), Expect = 0.015
Identities = 26/118 (22%), Positives = 42/118 (35%), Gaps = 10/118 (8%)
Query: 671 AAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKT 730
A AE+++ D+ S+ PA AE AA ++ +S+ DE
Sbjct: 78 AGDGAEATAPSDAGSQASPDDDAQPA------AEAEAADQSAPPEASSTSATDEAATDPP 131
Query: 731 PAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKA--PAKPVAQAAKPGDLSSQEAS 786
A P A+ ++ D+ S ++P V P A G L + S
Sbjct: 132 AT--AAARDGPTPDPTAQPATPDERRSPRQRPPVSGEPPTPSTPDAHVAGTLQAARES 187
Score = 31.8 bits (72), Expect = 1.2
Identities = 25/116 (21%), Positives = 43/116 (37%), Gaps = 20/116 (17%)
Query: 654 SEYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAES 713
S+ P+ A AA + A + S++ DE P A+
Sbjct: 92 SQASPDDDAQPAAEAEAADQSAPPEASSTSAT-DEAATDPPATAAARDGPTPDP--TAQP 148
Query: 714 SSDDDSSSEDEKPAVK----TPAKPVA------QAAK-------PAAAKKAESSSD 752
++ D+ S ++P V TP+ P A QAA+ A++A ++ D
Sbjct: 149 ATPDERRSPRQRPPVSGEPPTPSTPDAHVAGTLQAARESLVETLARFARRAAATDD 204
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 38.6 bits (89), Expect = 0.018
Identities = 42/140 (30%), Positives = 70/140 (50%), Gaps = 10/140 (7%)
Query: 668 KPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPA 727
K AKKA+ + ++ + A K A+ AAE AA +AE+++D+ ++E++ A
Sbjct: 1310 KAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAE-AAKAEAEAAADEAEAAEEKAEA 1368
Query: 728 VK---TPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQE 784
+ AK A AAK A +K ++ + ED+K A + K A A K D + ++
Sbjct: 1369 AEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADE--LKKAAAAKKKADEAKKK 1426
Query: 785 ASEKRSPNDFALWKKSKAGE 804
A EK+ ++ K KA E
Sbjct: 1427 AEEKKKADEA----KKKAEE 1442
Score = 38.2 bits (88), Expect = 0.026
Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 8/139 (5%)
Query: 670 AAAKKAESSSDDDSSSEDEKPAVK---APAKPVAHAAEPAAAKKAESSSDDDSSSEDEKP 726
AA +AE+++D+ ++E++ A + AK A AA+ A +K ++ + ED+K
Sbjct: 1347 AAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKK 1406
Query: 727 AVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKA-PAKPVAQAAKPGDLSSQEA 785
A + A+ A KKAE D + + + A KA AK A+ AK + + ++A
Sbjct: 1407 ADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKA 1466
Query: 786 SEKRSPNDFALWKKSKAGE 804
E + ++ K KA E
Sbjct: 1467 EEAKKADEA----KKKAEE 1481
Score = 35.1 bits (80), Expect = 0.22
Identities = 21/54 (38%), Positives = 30/54 (55%)
Query: 57 KETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKKIPPSEMFKMETDK 110
+E K EAK+ AEA+K A++ +K E A EAK+A++ E K E K
Sbjct: 1493 EEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKK 1546
Score = 34.3 bits (78), Expect = 0.39
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 55 VDKETLA-KEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQK 96
+ A K +E K+ AE K AE++ KKA A +EA+EA+K
Sbjct: 1661 IKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKK 1703
Score = 33.6 bits (76), Expect = 0.66
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 61 AKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKKIPPSEMFKMETDK 110
AK+ E + A+ K AE+++K EL A+E K+A++K E K E DK
Sbjct: 1527 AKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDK 1576
Score = 33.6 bits (76), Expect = 0.66
Identities = 20/54 (37%), Positives = 27/54 (50%)
Query: 57 KETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKKIPPSEMFKMETDK 110
+E K AK+ AE K A + K AAA EA+ A++K +E K E K
Sbjct: 1325 EEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK 1378
Score = 33.6 bits (76), Expect = 0.68
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 58 ETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKKIPPSEMFKME 107
+ K EAK+ A+ K AE+ +K E A+EAK+A + E K +
Sbjct: 1500 DEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKAD 1549
Score = 33.2 bits (75), Expect = 1.0
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 53 KLVDKETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQK 96
K + E K +EAK AE K AE+E+KK E +EA+E +K
Sbjct: 1605 KKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKK 1648
Score = 32.8 bits (74), Expect = 1.2
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 58 ETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKKIPPSEMFKMETDK 110
E K +EAK+ A+A K +E KKA AA EA+ A + +E K E +
Sbjct: 1319 EAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEE-KAEAAE 1370
Score = 32.4 bits (73), Expect = 1.6
Identities = 19/40 (47%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 58 ETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKK 97
E K +EAK+ EA+K AE+ +KKA+ AA ++A+EA+K
Sbjct: 1306 EAKKKAEEAKKADEAKKKAEEAKKKAD-AAKKKAEEAKKA 1344
Score = 32.0 bits (72), Expect = 2.1
Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 11/137 (8%)
Query: 671 AAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKT 730
A KKA+++ ++ A KA A+ A AE AA +KAE++ ++ + A K
Sbjct: 1327 AKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAE-AAEEKAEAAEKKKEEAKKKADAAKK 1385
Query: 731 PAKPVAQAAKPAAAKKAESS---SDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASE 787
A+ +A + A KKAE +D+ + K AK A+ K D + ++A E
Sbjct: 1386 KAEEKKKADE--AKKKAEEDKKKADELKKAAAAKKKADE-AKKKAEEKKKADEAKKKAEE 1442
Query: 788 KRSPNDFALWKKSKAGE 804
+ ++ K KA E
Sbjct: 1443 AKKADEA----KKKAEE 1455
Score = 31.6 bits (71), Expect = 2.9
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
Query: 58 ETLAKEKEAKRLAEAEKAAEKERKKAELA--------AAQEAKEAQKKIPPSEMFKMETD 109
E K +EAK+ EA+K AE+ +KKA+ A A EAK+A++ E K E
Sbjct: 1474 EAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEA 1533
Query: 110 K 110
K
Sbjct: 1534 K 1534
Score = 31.3 bits (70), Expect = 3.5
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 61 AKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKKIPPSEMFKMETDK 110
AK+ E + A+ K AE+ +K E A+E K+A + E+ K E K
Sbjct: 1515 AKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKK 1564
Score = 30.9 bits (69), Expect = 3.9
Identities = 17/60 (28%), Positives = 29/60 (48%)
Query: 48 RPSAVKLVDKETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKKIPPSEMFKME 107
+ A + K+ + + AE K A++ +K E A EAK+A++K E+ K E
Sbjct: 1496 KKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAE 1555
Score = 30.5 bits (68), Expect = 5.8
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 58 ETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKK 97
E K EAK+ AE K AE+ +KKAE A++A EA+KK
Sbjct: 1441 EEAKKADEAKKKAEEAKKAEEAKKKAE--EAKKADEAKKK 1478
Score = 30.5 bits (68), Expect = 5.8
Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 58 ETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKK 97
E K EAK+ AE K A++ +KKAE A++A+EA+KK
Sbjct: 1428 EEKKKADEAKKKAEEAKKADEAKKKAE--EAKKAEEAKKK 1465
Score = 30.5 bits (68), Expect = 6.1
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 58 ETLAKEKEAKRLA-EAEKAAEKERKKAELAAAQEAKEAQKKIPPSEMFKMETDKYSQ 113
E K +EAK+ A EA+KAAE ++K E A+EAK+A + E K + K ++
Sbjct: 1487 EAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAE 1543
Score = 30.5 bits (68), Expect = 6.5
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 51 AVKLVDKETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKK 97
A + E K EAK+ AE K A++ +KKAE A ++A A+KK
Sbjct: 1292 ADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAE-EAKKKADAAKKK 1337
Score = 30.1 bits (67), Expect = 7.5
Identities = 21/45 (46%), Positives = 31/45 (68%), Gaps = 4/45 (8%)
Query: 55 VDKETLAKEK--EAKRLAEAEKAAEKERKKAELAAAQEAKEAQKK 97
+ K AK+K EAK+ AE +K A++ +KKAE A++A EA+KK
Sbjct: 1410 LKKAAAAKKKADEAKKKAEEKKKADEAKKKAE--EAKKADEAKKK 1452
Score = 29.7 bits (66), Expect = 8.8
Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 3/136 (2%)
Query: 672 AKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESS--SDDDSSSEDEKPAVK 729
AKK + + + K +AH A AA KAE + +D+ +E++K A +
Sbjct: 1235 AKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADE 1294
Query: 730 TPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKA-PAKPVAQAAKPGDLSSQEASEK 788
+ A A K E+ D++ + E+ KA AK A+ AK +++ +E
Sbjct: 1295 AKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEA 1354
Query: 789 RSPNDFALWKKSKAGE 804
+ A +K++A E
Sbjct: 1355 AADEAEAAEEKAEAAE 1370
Score = 29.7 bits (66), Expect = 8.8
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 58 ETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKK 97
E K EAK+ AE K A++ +KKAE A ++A EA+K
Sbjct: 1467 EEAKKADEAKKKAEEAKKADEAKKKAE-EAKKKADEAKKA 1505
Score = 29.7 bits (66), Expect = 9.1
Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 3/124 (2%)
Query: 673 KKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPA 732
K E D++ +EK K A + AKK + + + +K A
Sbjct: 1285 KAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKA 1344
Query: 733 KPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPA---KPVAQAAKPGDLSSQEASEKR 789
A+A AAA +AE++ + ++E +K K A K A+ K D + ++A E +
Sbjct: 1345 AEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDK 1404
Query: 790 SPND 793
D
Sbjct: 1405 KKAD 1408
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner
membrane complex of itself with TolQ and TolR to the
outer membrane complex of TolB and OprL (also called
Pal). Most of the length of the protein consists of
low-complexity sequence that may differ in both length
and composition from one species to another,
complicating efforts to discriminate TolA (the most
divergent gene in the tol-pal system) from paralogs such
as TonB. Selection of members of the seed alignment and
criteria for setting scoring cutoffs are based largely
conserved operon struction. //The Tol-Pal complex is
required for maintaining outer membrane integrity. Also
involved in transport (uptake) of colicins and
filamentous DNA, and implicated in pathogenesis.
Transport is energized by the proton motive force. TolA
is an inner membrane protein that interacts with
periplasmic TolB and with outer membrane porins ompC,
phoE and lamB [Transport and binding proteins, Other,
Cellular processes, Pathogenesis].
Length = 346
Score = 37.9 bits (88), Expect = 0.018
Identities = 18/41 (43%), Positives = 29/41 (70%)
Query: 57 KETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKK 97
++ A EK AK+ +A K AE+++K+AE A A++A EA+ K
Sbjct: 95 EQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAK 135
Score = 36.4 bits (84), Expect = 0.058
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 56 DKETLAKEKEAKRLAEAEKAAEK--ERKKAELAAAQEAKEAQKK 97
+K+ A+E +AK+ AEA+ AE E+K E A Q +EA+ K
Sbjct: 116 EKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAK 159
Score = 35.6 bits (82), Expect = 0.12
Identities = 22/43 (51%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 57 KETLAKEKEAKRLAEAE-KAAEKERKKAEL-AAAQEAKEAQKK 97
K A E +AK AEAE KA E+ +K+AE A A+ A EA+KK
Sbjct: 125 KAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKK 167
Score = 35.6 bits (82), Expect = 0.13
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 61 AKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKK 97
A E + K AEA+ AE + K A +A+ A+ K
Sbjct: 168 AAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAK 204
Score = 35.2 bits (81), Expect = 0.16
Identities = 30/127 (23%), Positives = 45/127 (35%), Gaps = 6/127 (4%)
Query: 659 EIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDD 718
+ + K A K+AE + +++E +K A +A K A A A AK + +
Sbjct: 136 AEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAK 195
Query: 719 SSSEDEKPAVKTPAKPVAQAAKPAAA------KKAESSSDDDSSSEDEKPAVKAPAKPVA 772
+ +E K A A+A AAA K E+ D A K
Sbjct: 196 AKAEAAKAKAAAEAAAKAEAEAAAAAAAEAERKADEAELGDIFGLASGSNAEKQGGARGN 255
Query: 773 QAAKPGD 779
A D
Sbjct: 256 AAGSEVD 262
Score = 33.3 bits (76), Expect = 0.57
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 57 KETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAK---EAQKK 97
KE K+ E + A+A A+K+ +A+ A EAK EA+ K
Sbjct: 145 KEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAK 188
Score = 33.3 bits (76), Expect = 0.63
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 53 KLVDKETLAKEKEAKRLAEAEKAAEKERKK--AELAAAQEAKEAQKKIP 99
+K E+ AK+ E +K AE+ + K AE A EA+ +K
Sbjct: 98 AAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKE 146
Score = 33.3 bits (76), Expect = 0.65
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 61 AKEKEAKRLAEAEKAAEKERKKAELAAAQ-EAKEAQKK 97
E E K EA+K AE+E K A A+ +A EA+KK
Sbjct: 137 EAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKK 174
Score = 32.1 bits (73), Expect = 1.4
Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 1/111 (0%)
Query: 693 KAPAKPVAHAAEPAAAKKAESSSDDDSSSE-DEKPAVKTPAKPVAQAAKPAAAKKAESSS 751
+A A+ A AE AA + E + + A + AK A K+AE +
Sbjct: 97 RAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEA 156
Query: 752 DDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRSPNDFALWKKSKA 802
+++E +K A +A K A+A + ++ +E+ A K+ A
Sbjct: 157 KAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAA 207
Score = 31.7 bits (72), Expect = 1.6
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 62 KEKEAKRLAEAEK--AAEKERKKAELAAAQEAKEAQKK 97
E EAK AEA+ AE+ + KAE A A+ A EA K
Sbjct: 175 AEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAEAAAK 212
Score = 31.7 bits (72), Expect = 1.7
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 57 KETLAKEKEAKRLAEAEKAA--EKERKKAELAAA--QEAKEAQKK 97
E AK+ E K+ E A E K A A + +EA+K+
Sbjct: 107 AEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQ 151
Score = 31.3 bits (71), Expect = 2.6
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 61 AKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKKIP 99
A+E E +R AE + E E++ A AA++A++A K+
Sbjct: 77 AEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAE 115
Score = 31.0 bits (70), Expect = 3.1
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 57 KETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKKI 98
++ A E+ ++ E AAEK K+AE AA++A+E QK+
Sbjct: 81 EKQRAAEQARQKELEQRAAAEKAAKQAE-QAAKQAEEKQKQA 121
Score = 30.6 bits (69), Expect = 3.8
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 56 DKETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKK 97
+ + A + K+ AEA+K AE E K A A+ E K
Sbjct: 155 EAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKA 196
Score = 29.8 bits (67), Expect = 6.3
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 57 KETLAKEKEAKRLAEAEKAAEKERKK---AELAAAQEAKEAQK 96
+E K ++ AE ++AAE+ R+K AA + AK+A++
Sbjct: 67 QERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQ 109
Score = 29.8 bits (67), Expect = 7.0
Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 56 DKETLAKEKEAKRLAEA--EKAAEKERKKAE-LAAAQEAKEAQKK 97
+ + AK +EAK AEA KAA + KAE AAA A EA++K
Sbjct: 184 EAKAKAKAEEAKAKAEAAKAKAAAEAAAKAEAEAAAAAAAEAERK 228
>gnl|CDD|177447 PHA02664, PHA02664, hypothetical protein; Provisional.
Length = 534
Score = 38.4 bits (89), Expect = 0.019
Identities = 27/136 (19%), Positives = 50/136 (36%), Gaps = 9/136 (6%)
Query: 658 PEIVASAQTPKPAAAKKAESSSDD---DSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESS 714
E A+ P AA + ++ ++ D+ +A + PA A +A+S
Sbjct: 394 AERAANGARGSPMAAPEEGRAAAAAAAANAPADQDVEAEAHDEFDQDPGAPAHADRADSD 453
Query: 715 SDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQA 774
DD E + + + + ES S DDS ++ ++ V QA
Sbjct: 454 EDDMDEQESGDERADGEDDSDSSYSYSTTSSEDESDSADDSWGDESDSGIEHDDGGVGQA 513
Query: 775 AKPGDLSSQEASEKRS 790
+ +E E+R+
Sbjct: 514 IE------EEEEEERA 523
>gnl|CDD|221173 pfam11702, DUF3295, Protein of unknown function (DUF3295). This
family is conserved in fungi but the function is not
known.
Length = 509
Score = 38.0 bits (88), Expect = 0.021
Identities = 38/183 (20%), Positives = 64/183 (34%), Gaps = 28/183 (15%)
Query: 637 KDMADLNVLPPTV---LTRVSEYIPEIVASAQT------PKPAAAKKAESSSDDDSSSED 687
KD+ L + P + SE P +S T P A + ES+S + D
Sbjct: 74 KDLEPLALPMPNLAPITPPSSEPTPAPPSSESTATRTPDPNQQALESTESTSTTSADCND 133
Query: 688 EKPAVKAPA------KPVAHA-AEPAAAKKAE----SSSDDDSSSEDEKPAVKTPAKPVA 736
+ + + A + + SSS ++ ++ P+ A+P A
Sbjct: 134 SEQSSTPNLNSSDTSTSSSGALPSTSVVRGFSPSHISSSYRSTAQLNKAPSPTKSAEPTA 193
Query: 737 QA-AKPAAAKKAE-------SSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEK 788
AKP KK + SS DDD S +++ + + P + KP + E
Sbjct: 194 APQAKPELPKKKQAMFTLGGSSGDDDEDSFEDRMSSQDPKRSSLPKPKPKMFQLGGSDEL 253
Query: 789 RSP 791
Sbjct: 254 GKS 256
Score = 31.4 bits (71), Expect = 2.2
Identities = 24/114 (21%), Positives = 41/114 (35%), Gaps = 11/114 (9%)
Query: 657 IPEIVASAQTPKPAAAKKAE-------SSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAK 709
E A+ Q KP KK + SS DDD S +++ + + P + +P +
Sbjct: 188 SAEPTAAPQ-AKPELPKKKQAMFTLGGSSGDDDEDSFEDRMSSQDPKRSSLPKPKPKMFQ 246
Query: 710 KAESSSDDDSSSEDEKPAVKTPA---KPVAQAAKPAAAKKAESSSDDDSSSEDE 760
S S P KT + + V + + E + + + DE
Sbjct: 247 LGGSDELGKSLPSLMSPRKKTASFKEQVVTRTFPERTSDDDEDAIETEEDDVDE 300
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 37.9 bits (88), Expect = 0.022
Identities = 27/163 (16%), Positives = 48/163 (29%), Gaps = 7/163 (4%)
Query: 662 ASAQTPKPAAAKKAESSSDDDSSSEDEKPAV--KAPAKPVAHAAEPAAAKKAESSSDDDS 719
+ + + + KA S + + + K + + K ES +
Sbjct: 191 TTTEKTEGKTSVKAASLKRNPPKKSNIMSSFFKKKTKEKKEKKEASESTVKEESEEESGK 250
Query: 720 SSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPA---VKAPAKPVAQAAK 776
+ P + E S ++ + E EK +K + + +
Sbjct: 251 RDVILEDESAEPTGLDEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKKMMEDEDEDEE 310
Query: 777 PGDL--SSQEASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPG 817
+ S E E P L KK + E SP G R G
Sbjct: 311 MEIVPESPVEEEESEEPEPPPLPKKEEEKEEVTVSPDGGRRRG 353
Score = 37.1 bits (86), Expect = 0.041
Identities = 19/149 (12%), Positives = 43/149 (28%), Gaps = 22/149 (14%)
Query: 666 TPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSS-SEDE 724
T +S ++ ++P+ K P ++ + +AKK + +S + ++ +
Sbjct: 139 TGVGLPPVAPAASPALKPTANGKRPSSKPPKSIMSPEVKVKSAKKTQDTSKETTTEKTEG 198
Query: 725 KPAVKTP---------------------AKPVAQAAKPAAAKKAESSSDDDSSSEDEKPA 763
K +VK + + + K ES + +
Sbjct: 199 KTSVKAASLKRNPPKKSNIMSSFFKKKTKEKKEKKEASESTVKEESEEESGKRDVILEDE 258
Query: 764 VKAPAKPVAQAAKPGDLSSQEASEKRSPN 792
P + S E S+
Sbjct: 259 SAEPTGLDEDEDEDEPKPSGERSDSEEET 287
Score = 36.0 bits (83), Expect = 0.090
Identities = 19/126 (15%), Positives = 34/126 (26%), Gaps = 6/126 (4%)
Query: 674 KAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAK-----KAESSSDDDSSSEDEKPAV 728
PA KP A+ P++ E ++D
Sbjct: 132 NPNVKRRTGVGLPPVAPAASPALKPTANGKRPSSKPPKSIMSPEVKVKSAKKTQDTSKET 191
Query: 729 KTPAKPVAQAAKPAAAKK-AESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASE 787
T + K A+ K+ S+ SS +K K K +++ + +
Sbjct: 192 TTEKTEGKTSVKAASLKRNPPKKSNIMSSFFKKKTKEKKEKKEASESTVKEESEEESGKR 251
Query: 788 KRSPND 793
D
Sbjct: 252 DVILED 257
Score = 29.4 bits (66), Expect = 9.3
Identities = 18/113 (15%), Positives = 41/113 (36%), Gaps = 1/113 (0%)
Query: 671 AAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKT 730
K+ + +S ++ +S ++ ++P+ K
Sbjct: 108 ILKENLHNCSKNSLEYGKQAGPITNPNVKRRTGVGLPPVAPAASPALKPTANGKRPSSKP 167
Query: 731 PAKPVAQAAKPAAAKKAESSSDDDSS-SEDEKPAVKAPAKPVAQAAKPGDLSS 782
P ++ K +AKK + +S + ++ + K +VKA + K +SS
Sbjct: 168 PKSIMSPEVKVKSAKKTQDTSKETTTEKTEGKTSVKAASLKRNPPKKSNIMSS 220
>gnl|CDD|218738 pfam05766, NinG, Bacteriophage Lambda NinG protein. NinG or Rap
is involved in recombination. Rap (recombination adept
with plasmid) increases lambda-by-plasmid recombination
catalyzed by Escherichia coli's RecBCD pathway.
Length = 188
Score = 36.9 bits (86), Expect = 0.024
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 53 KLVDKETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQK 96
L K A+EK+ K A+AE+ K RK+ + KEAQ
Sbjct: 31 ALALKREKAQEKKRKAEAQAERRELKARKEKLKTRSDWLKEAQA 74
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 38.1 bits (89), Expect = 0.025
Identities = 21/137 (15%), Positives = 47/137 (34%), Gaps = 8/137 (5%)
Query: 647 PTVLTRVSEYIPEIVASAQTPKPAAAKKAESSSDDDSSSE---DEKPAVKAPAKPVAHAA 703
P V + + + A +P A+ +++ + S + V VA
Sbjct: 846 PVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQ 905
Query: 704 EPAAAKKAESSSDDDSSSEDEKPAVKTP-----AKPVAQAAKPAAAKKAESSSDDDSSSE 758
+ + ++ E+P V T A+ VA+ A+P + E++ ++++
Sbjct: 906 PEEVVVVETTHPEVIAAPVTEQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAET 965
Query: 759 DEKPAVKAPAKPVAQAA 775
E + A
Sbjct: 966 AEVVVAEPEVVAQPAAP 982
Score = 37.7 bits (88), Expect = 0.038
Identities = 19/116 (16%), Positives = 38/116 (32%), Gaps = 2/116 (1%)
Query: 653 VSEYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAE 712
V PE++A+ T +P +++ + + + E V P A E A +
Sbjct: 912 VETTHPEVIAAPVTEQPQVITESDVAVAQEVAEHAE--PVVEPQDETADIEEAAETAEVV 969
Query: 713 SSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPA 768
+ + + + A+ A A+ + P +APA
Sbjct: 970 VAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEATVEHNHATAPMTRAPA 1025
Score = 36.2 bits (84), Expect = 0.11
Identities = 26/141 (18%), Positives = 49/141 (34%), Gaps = 14/141 (9%)
Query: 640 ADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAAKKAESSSDDDSSSE-------DEKPAV 692
A++ V + + + + P A + E +++ E+P V
Sbjct: 871 AEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQV 930
Query: 693 KAP-----AKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKA 747
A+ VA AEP + E++ ++++ E + VAQ A P A+ A
Sbjct: 931 ITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEV--VAQPAAPVVAEVA 988
Query: 748 ESSSDDDSSSEDEKPAVKAPA 768
+ + PA A
Sbjct: 989 AEVETVTAVEPEVAPAQVPEA 1009
Score = 31.2 bits (71), Expect = 3.2
Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 14/84 (16%)
Query: 724 EKPAVKTPAKPVAQAAKPAAAKKAESSSDDD--------------SSSEDEKPAVKAPAK 769
+ P TPA+P A A A + S E+ KP + K
Sbjct: 536 DVPPAPTPAEPAAPVVAAAPKAAAATPPAQPGLLSRFFGALKALFSGGEETKPQEQPAPK 595
Query: 770 PVAQAAKPGDLSSQEASEKRSPND 793
A+ + D + +R N+
Sbjct: 596 AEAKPERQQDRRKPRQNNRRDRNE 619
>gnl|CDD|153411 cd07957, Anticodon_Ia_Met, Anticodon-binding domain of methionyl
tRNA synthetases. This domain is found in methionyl
tRNA synthetases (MetRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain, and recognizes and specifically
binds to the tRNA anticodon (CAU). MetRS catalyzes the
transfer of methionine to the 3'-end of its tRNA.
Length = 129
Score = 35.5 bits (83), Expect = 0.026
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 281 VSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYL 333
V F T+ D EL + V A+ + ++ R AL+ I + N Y+
Sbjct: 28 VPEFGGLTEEDEELLEEAEELLEEVAEAM-EELEFRKALEEIMELARAANKYI 79
>gnl|CDD|237110 PRK12472, PRK12472, hypothetical protein; Provisional.
Length = 508
Score = 37.5 bits (87), Expect = 0.032
Identities = 31/144 (21%), Positives = 53/144 (36%), Gaps = 18/144 (12%)
Query: 666 TPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAK---------KAESSSD 716
PK A A + ++ + ++ AK A AA AA +A++ +D
Sbjct: 179 VPKAEALAAAPARAETLAREAEDAARAADEAKTAAAAAAREAAPLKASLRKLERAKARAD 238
Query: 717 DDSSSEDEK-PAVKT-PAKPVAQAAKPAAAKKAESSSD-------DDSSSEDEKPAVKAP 767
+ D+ A KT AK A+ + AA++A ++ D + A K
Sbjct: 239 AELKRADKALAAAKTDEAKARAEERQQKAAQQAAEAATQLDTAKADAEAKRAAAAATKEA 298
Query: 768 AKPVAQAAKPGDLSSQEASEKRSP 791
AK A ++ +A P
Sbjct: 299 AKAAAAKKAETAKAATDAKLALEP 322
Score = 31.4 bits (71), Expect = 2.6
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 678 SSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDE-KPAVKTPAKPVA 736
S +D + + PA+ P K A AA PA A+ ++D + + DE K A A+ A
Sbjct: 163 SPNDAAPVDISHPALFVP-KAEALAAAPARAETLAREAEDAARAADEAKTAAAAAAREAA 221
Query: 737 QAAKPAAAKKAESS---SDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASE 787
A+ +K E + +D + D+ A + A+A + ++Q+A+E
Sbjct: 222 PLK--ASLRKLERAKARADAELKRADKALAAAKTDEAKARAEERQQKAAQQAAE 273
Score = 31.4 bits (71), Expect = 2.7
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 714 SSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDE-KPAVKAPAKPVA 772
S +D + + PA+ P K A AA PA A+ ++D + + DE K A A A+ A
Sbjct: 163 SPNDAAPVDISHPALFVP-KAEALAAAPARAETLAREAEDAARAADEAKTAAAAAAREAA 221
Query: 773 QAAKPGDLSSQEASEKRSPNDFALWKKSKAG 803
L E ++ R+ + K+ A
Sbjct: 222 PLKA--SLRKLERAKARADAELKRADKALAA 250
Score = 30.2 bits (68), Expect = 6.5
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 39 PFLPLPSIGRPSAVKLVDKETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKKI 98
P L +P +A ETLA+E E +A +AA+ E K A AAA+EA + +
Sbjct: 175 PALFVPKAEALAAAP-ARAETLAREAE-----DAARAAD-EAKTAAAAAAREAAPLKASL 227
Query: 99 PPSEMFKMETD 109
E K D
Sbjct: 228 RKLERAKARAD 238
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 37.5 bits (87), Expect = 0.034
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 54 LVDKETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKK 97
L++++ EK AK AE E+ AE++R++ E AA EA AQ K
Sbjct: 250 LLEEKRRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAK 293
>gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 944
Score = 37.4 bits (87), Expect = 0.042
Identities = 22/165 (13%), Positives = 49/165 (29%), Gaps = 18/165 (10%)
Query: 657 IPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVA--HAAEPAAAKKAESS 714
+PE + A A +++ ++K A+ AA A +A++S
Sbjct: 376 LPEGQTPSALAAAVQAPHANEPQFVNAAPAEKKTALTEQTTAQQQVQAANAEAVAEADAS 435
Query: 715 SDDDSSSEDEKPAVKTPAKPVA--QA-----AKPAAAKKAESSSDDDSSSEDEKPAVKAP 767
++ + E + QA A+ + + S D+S+ ++ +
Sbjct: 436 AEPADTVEQALDDESELLAALNAEQAVILSQAQSQGFEASSSLDADNSAVPEQIDSTAEQ 495
Query: 768 AKPVA---------QAAKPGDLSSQEASEKRSPNDFALWKKSKAG 803
+ +A + + S D G
Sbjct: 496 SVVNPSVTDTQVDDTSASNNSAADNTVDDNYSAEDTLESNGLDEG 540
Score = 32.8 bits (75), Expect = 1.2
Identities = 32/137 (23%), Positives = 41/137 (29%), Gaps = 23/137 (16%)
Query: 663 SAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSE 722
A +PK KK SS D KP K P A PA+ K SS D +S
Sbjct: 627 DALSPKEGDGKK---------SSADRKP--KTPPS----RAPPASLSKPASSPDASQTSA 671
Query: 723 DEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSED------EKPAVKAPAKPVAQAAK 776
+ P AA + S+ + E+ A A A
Sbjct: 672 SFDLDPDFE--LATHQSVPEAALASGSAPAPPPVPDPYDRPPWEEAPEVASANDGPNNAA 729
Query: 777 PGDLSSQEASEKRSPND 793
G+LS S
Sbjct: 730 EGNLSESVEDASNSELQ 746
>gnl|CDD|173181 PRK14718, PRK14718, ribonuclease III; Provisional.
Length = 467
Score = 37.1 bits (85), Expect = 0.044
Identities = 33/129 (25%), Positives = 49/129 (37%), Gaps = 16/129 (12%)
Query: 662 ASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAA---EPAAAKKAESSSDDD 718
A A T AA +DD + S P A V H EP A+K AE
Sbjct: 321 AGAHT-HAAAMPAVPEQADDAARSPATTPVAVIRAAHVEHGLDKGEPRASKPAE------ 373
Query: 719 SSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPG 778
KPA T P + KP+ K +E + D + +K + K + + A
Sbjct: 374 ------KPAAATDKPPEKASDKPSPEKTSEKTPDKSHEKQLDKSSEPVAEKALDKTADKP 427
Query: 779 DLSSQEASE 787
D +++ +E
Sbjct: 428 DAAARLPAE 436
Score = 35.2 bits (80), Expect = 0.17
Identities = 35/114 (30%), Positives = 44/114 (38%), Gaps = 8/114 (7%)
Query: 663 SAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAH-AAEPAAAKKAESSSDDDSSS 721
+P A+K AE + + +KP KA KP +E K E D S
Sbjct: 360 GLDKGEPRASKPAEKPA-----AATDKPPEKASDKPSPEKTSEKTPDKSHEKQLDKSSEP 414
Query: 722 EDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAA 775
EK KT KP A A PA + D SSS + P + A VA A
Sbjct: 415 VAEKALDKTADKPDAAARLPAETADRPPRARDASSSAE--PDLAAAPVRVADAG 466
Score = 34.4 bits (78), Expect = 0.31
Identities = 30/139 (21%), Positives = 52/139 (37%), Gaps = 11/139 (7%)
Query: 658 PEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDD 717
+ V + AA +A+ + ++ + + + + A A HAA A +DD
Sbjct: 283 SKAVDAKHGESRAAQLRADDAKAGETKAGEARASADAKAGAHTHAA---AMPAVPEQADD 339
Query: 718 DSSSEDEKPAVKTPAKPV--------AQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAK 769
+ S P A V +A+KPA A + + +S+ P +
Sbjct: 340 AARSPATTPVAVIRAAHVEHGLDKGEPRASKPAEKPAAATDKPPEKASDKPSPEKTSEKT 399
Query: 770 PVAQAAKPGDLSSQEASEK 788
P K D SS+ +EK
Sbjct: 400 PDKSHEKQLDKSSEPVAEK 418
Score = 34.0 bits (77), Expect = 0.43
Identities = 33/138 (23%), Positives = 54/138 (39%), Gaps = 12/138 (8%)
Query: 668 KPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPA 727
K ++ A+ +DD + E + +A A A A AAA A DD A
Sbjct: 289 KHGESRAAQLRADDAKAGETKAGEARASADAKAGAHTHAAAMPAVPEQADD--------A 340
Query: 728 VKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASE 787
++PA + A + + +S EKPA P + KP S E +
Sbjct: 341 ARSPATTPVAVIRAAHVEHGLDKGEPRASKPAEKPAAATDKPPEKASDKP----SPEKTS 396
Query: 788 KRSPNDFALWKKSKAGEP 805
+++P+ + K+ EP
Sbjct: 397 EKTPDKSHEKQLDKSSEP 414
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 36.8 bits (86), Expect = 0.060
Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 46 IGRPSAVKLVDKETLAKEKEAKR-LAEAEKAAEKERKKAELAAAQEAKEAQKKIPPSEMF 104
IG ++ +K+ + E+ AKR + EA+K AE +K+A L A +E + + ++
Sbjct: 14 IGYLLRKRIAEKKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAEL--EREL 71
Query: 105 KMETDKYSQFDETVL 119
K ++ + + +L
Sbjct: 72 KERRNELQRLERRLL 86
>gnl|CDD|222808 PHA00666, PHA00666, putative protease.
Length = 233
Score = 35.8 bits (82), Expect = 0.066
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 697 KPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSS 756
+P ++PAA++ A + D+ + D +P A A KP KKA+ ++
Sbjct: 16 QPGDGGSQPAASEPAAGAGDNPAPQGDPTQEEGDKPQPAAGADKPEGDKKADGDKPEEKK 75
Query: 757 SEDEKPAVKAPAKPVAQAAK 776
++ AP K QAA+
Sbjct: 76 PGEKPEG--APEKYEFQAAE 93
>gnl|CDD|223041 PHA03321, PHA03321, tegument protein VP11/12; Provisional.
Length = 694
Score = 36.5 bits (84), Expect = 0.070
Identities = 33/172 (19%), Positives = 50/172 (29%), Gaps = 17/172 (9%)
Query: 647 PTVLTRVSEYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAH----A 702
P + + +A P+PAAA S + P P
Sbjct: 470 PEYVDPLGALRRLPAGAAPPPEPAAA----PSPATYYTRMGGGPPRLPPRNRATETLRPD 525
Query: 703 AEPAAAKKAESSSDDDSSSEDEK-PAVKTPAKPVAQAAKPAAAKKA----ESSSDDDSSS 757
P AA E D +D++ A + A A E SD +
Sbjct: 526 WGPPAAAPPEQMEDPYLEPDDDRFDRRDGAAAAATSHPREAPAPDDDPIYEGVSDSEEPV 585
Query: 758 EDEKPAVKAPAKPVAQ----AAKPGDLSSQEASEKRSPNDFALWKKSKAGEP 805
+E P + P+ + A +P DL + + N W S P
Sbjct: 586 YEEIPTPRVYQNPLPRPMEGAGEPPDLDAPTSPWVEEENPIYGWGDSPLFSP 637
>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 484
Score = 36.1 bits (84), Expect = 0.079
Identities = 24/124 (19%), Positives = 38/124 (30%), Gaps = 3/124 (2%)
Query: 640 ADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPV 699
+DL L P + P A+ AA AE E K + V
Sbjct: 46 SDLAALAPPAAAAPAAAQPPPAAAPAAVSRPAAPAAEP---APWLVEHAKRLTAQREQLV 102
Query: 700 AHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSED 759
A AA PAA + ++ + ++ + A A + A A + + E
Sbjct: 103 ARAAAPAAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVADAVKARIER 162
Query: 760 EKPA 763
Sbjct: 163 IVND 166
Score = 35.3 bits (82), Expect = 0.15
Identities = 39/144 (27%), Positives = 54/144 (37%), Gaps = 25/144 (17%)
Query: 659 EIVA------SAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAK---PVAHAAEPAAAK 709
EIVA +A P AAA A P APA P A AAEPA
Sbjct: 39 EIVALADSDLAALAPPAAAAPAAAQP-----------PPAAAPAAVSRPAAPAAEPAPWL 87
Query: 710 KAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAK 769
+ + + V A P A A+ AA AE ++ ++++ + A AP
Sbjct: 88 VEHA----KRLTAQREQLVARAAAPAAPEAQAPAA-PAERAAAENAARRLARAAAAAPRP 142
Query: 770 PVAQAAKPGDLSSQEASEKRSPND 793
V A + +A +R ND
Sbjct: 143 RVPADAAAAVADAVKARIERIVND 166
>gnl|CDD|225711 COG3170, FimV, Tfp pilus assembly protein FimV [Cell motility and
secretion / Intracellular trafficking and secretion].
Length = 755
Score = 36.4 bits (84), Expect = 0.090
Identities = 24/138 (17%), Positives = 49/138 (35%), Gaps = 18/138 (13%)
Query: 662 ASAQTPKPAAAK-KAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSS 720
++P+ A A+ KA++++ S+ ++ K AK A A+ A + + + +
Sbjct: 251 ILRESPQEALAEVKAQTAAFAGEPSKADRV-GKPVAKAPAKVAKERALAELPARVAELQA 309
Query: 721 SEDEKPA-VKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGD 779
++ + A P+A A A AP+ P Q +
Sbjct: 310 QLNKAQHELAQKAAPLAAAQAALDA---------------PAETATAPSAPAPQVSAESS 354
Query: 780 LSSQEASEKRSPNDFALW 797
+ + +P D L
Sbjct: 355 PAQPGSYLLAAPGDAPLG 372
Score = 33.0 bits (75), Expect = 0.84
Identities = 29/135 (21%), Positives = 45/135 (33%), Gaps = 6/135 (4%)
Query: 658 PEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDD 717
E VA AQTP PA A +D + + AP A AA AE+ +
Sbjct: 570 AEAVALAQTPGPANALLLTVETDGPALDAADDDFAAAPDALSAVLQPADAASVAEAFGET 629
Query: 718 DSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPA-VKAPAKPVAQAAK 776
+ D + +P+ A A A + D A + PA A+ +
Sbjct: 630 VQADLDFADDLSALLQPLDDPAVSAKAPR-----LADLELLLAGKAEAEEPAVEEAELNE 684
Query: 777 PGDLSSQEASEKRSP 791
+ + + P
Sbjct: 685 SEADAEPDFLKDDEP 699
Score = 31.0 bits (70), Expect = 3.2
Identities = 25/142 (17%), Positives = 56/142 (39%), Gaps = 3/142 (2%)
Query: 691 AVKAPAKPVAHAAEPAAAK-KAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAES 749
+ + A+ + + + A A+ KA++++ S+ ++ K AK A+ AK A + +
Sbjct: 244 RIPSAAQILRESPQEALAEVKAQTAAFAGEPSKADRV-GKPVAKAPAKVAKERALAELPA 302
Query: 750 SSDDDSSSEDEKPA-VKAPAKPVAQAAKPGDLSSQEASEKRSPNDFALWKKSKAGEPWWS 808
+ + ++ + A P+A A D ++ A+ +P + S A +
Sbjct: 303 RVAELQAQLNKAQHELAQKAAPLAAAQAALDAPAETATAPSAPAPQVSAESSPAQPGSYL 362
Query: 809 SPWGEGRPGWHIECSVMASAVL 830
P + + A L
Sbjct: 363 LAAPGDAPLGELAQAQSARERL 384
Score = 30.7 bits (69), Expect = 5.1
Identities = 36/198 (18%), Positives = 58/198 (29%), Gaps = 30/198 (15%)
Query: 621 NSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAAKKAESSSD 680
I P+ AE A P P A A+ K A + +
Sbjct: 249 AQILRESPQEALAEVKAQTAAFAGEPSKADRVGK---PVAKAPAKVAKERALAELPARVA 305
Query: 681 DDSSSEDEKPA-VKAPAKPVAHAA--------------EPAAAKKAESSSDDDSSSEDEK 725
+ + ++ + A P+A A PA AESS S
Sbjct: 306 ELQAQLNKAQHELAQKAAPLAAAQAALDAPAETATAPSAPAPQVSAESSPAQPGSYLLAA 365
Query: 726 P------AVKTPA---KPVAQAAKPAAA---KKAESSSDDDSSSEDEKPAVKAPAKPVAQ 773
P + + +A+ + PAA + A ++ + +E E P PA +A
Sbjct: 366 PGDAPLGELAQAQSARERLAEESVPAAEPRSRLAPVAAVEQPFAEVESPLSSLPAPLLAL 425
Query: 774 AAKPGDLSSQEASEKRSP 791
D + P
Sbjct: 426 GLVALDGGWLVLRRAQQP 443
>gnl|CDD|234659 PRK00137, rplI, 50S ribosomal protein L9; Reviewed.
Length = 147
Score = 34.3 bits (80), Expect = 0.10
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 60 LAKE--KEAKRLAEAEKAAEKERKKAELAAAQEAKEA 94
A K + EA +A + + ELA A+ E
Sbjct: 35 KAVRATKGNLKQLEARRAELEAKAAEELAEAEALAEK 71
>gnl|CDD|222793 PHA00437, PHA00437, tail assembly protein.
Length = 94
Score = 33.0 bits (75), Expect = 0.11
Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 9/88 (10%)
Query: 689 KPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAE 748
K AVK K V+ A A D P PA+ V +K +
Sbjct: 8 KKAVKKVTKSVSKPVVGAVAGALGGGKDAPPVVVAAAPP---PAQIV------EVPEKDD 58
Query: 749 SSSDDDSSSEDEKPAVKAPAKPVAQAAK 776
++D++ +E K +A K A+
Sbjct: 59 VETEDEAQTESGKKKARAGGKKSLSVAR 86
Score = 29.5 bits (66), Expect = 2.4
Identities = 17/79 (21%), Positives = 25/79 (31%), Gaps = 9/79 (11%)
Query: 725 KPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQE 784
K AVK K V++ A A D P + + + +Q
Sbjct: 8 KKAVKKVTKSVSKPVVGAVAGALGGGKDAPPVVVAAAPPPAQIVEVPEKDDVETEDEAQT 67
Query: 785 ASEKRSPNDFALWKKSKAG 803
S K KK++AG
Sbjct: 68 ESGK---------KKARAG 77
>gnl|CDD|184543 PRK14157, PRK14157, heat shock protein GrpE; Provisional.
Length = 227
Score = 34.9 bits (80), Expect = 0.11
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 662 ASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSS 721
AQ A+ A++S++ S E + A +A A A AA AA +A+++++ +
Sbjct: 19 LEAQGQAAQASSGADASAE---SGEQQDSAAQADANAGADAAPAAAEGEAKAAAEKTGEA 75
Query: 722 EDEKPAVKTPAKPVAQAAKPAA 743
+ + T P+ QA K AA
Sbjct: 76 QSDSDDTLT---PLGQAKKEAA 94
Score = 29.2 bits (65), Expect = 9.4
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 702 AAEPAAAKKAESSSDDDS-SSEDEKPAVKTPAKPVAQAAKPAA----AKKAESSSDDDSS 756
A +A S +D + S E + A + A A AA AA AE + + S
Sbjct: 19 LEAQGQAAQASSGADASAESGEQQDSAAQADANAGADAAPAAAEGEAKAAAEKTGEAQSD 78
Query: 757 SED 759
S+D
Sbjct: 79 SDD 81
>gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component.
Length = 463
Score = 35.5 bits (81), Expect = 0.13
Identities = 33/134 (24%), Positives = 51/134 (38%), Gaps = 17/134 (12%)
Query: 615 GSSITDNSIFATLPKHWE--------AEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQT 666
G SITD ++ L K E A+ D +++ P S I E +
Sbjct: 100 GESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPA-----SGVIQEFLVKEGD 154
Query: 667 PKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKP 726
K A S +D++S+ P+ K P + PA K+ +S+ EKP
Sbjct: 155 TVEPGTKVAIISKSEDAASQ-VTPSQKIPETTDPKPSPPAEDKQKPKV---ESAPVAEKP 210
Query: 727 AVKTPAKPVAQAAK 740
+ P Q+AK
Sbjct: 211 KAPSSPPPPKQSAK 224
Score = 33.6 bits (76), Expect = 0.60
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 704 EPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPA 763
EP K A S +D++S+ P+ K P + + PA K+ +S+ EKP
Sbjct: 157 EPGT-KVAIISKSEDAASQ-VTPSQKIPETTDPKPSPPAEDKQKPKV---ESAPVAEKPK 211
Query: 764 VKAPAKPVAQAAKPGDLSSQEASEKRSP 791
+ P Q+AK L +E E+R P
Sbjct: 212 APSSPPPPKQSAKEPQLPPKE-RERRVP 238
>gnl|CDD|226266 COG3743, COG3743, Uncharacterized conserved protein [Function
unknown].
Length = 133
Score = 33.6 bits (77), Expect = 0.14
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 11/75 (14%)
Query: 696 AKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAK--PVAQAAKPAAAKKAESSSDD 753
A+P+A AA AA + + + PA A A AK AAA KA S+ +
Sbjct: 1 ARPMAKAAPEKAA---------TAKAGADAPAAAEAATTVEAAPDAKAAAAVKAPVSAPE 51
Query: 754 DSSSEDEKPAVKAPA 768
++ A AP
Sbjct: 52 AAADPAGADAPAAPK 66
Score = 30.9 bits (70), Expect = 1.3
Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Query: 670 AAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHA--AEPAAAKKAESSSDDDSSSEDEKPA 727
KA + + + PA A V A A+ AAA KA S+ + ++ A
Sbjct: 2 RPMAKAAPEKAATAKAGADAPAAAEAATTVEAAPDAKAAAAVKAPVSAPEAAADPAGADA 61
Query: 728 VKTPA 732
P
Sbjct: 62 PAAPK 66
>gnl|CDD|219392 pfam07382, HC2, Histone H1-like nucleoprotein HC2. This family
contains the bacterial histone H1-like nucleoprotein HC2
(approximately 200 residues long), which seems to be
found mostly in Chlamydia. HC2 functions in DNA
condensation, although it has been suggested that it
also has other roles.
Length = 187
Score = 34.4 bits (78), Expect = 0.14
Identities = 31/132 (23%), Positives = 44/132 (33%), Gaps = 8/132 (6%)
Query: 668 KPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPA 727
+ AAKKA + +KPA + AA+ AAKKA + + A
Sbjct: 21 RKPAAKKAAAKKTVVRKVAAKKPAARKTVAKKTVAAKKPAAKKAAKKAVAKKVVAKKPVA 80
Query: 728 VKTPAKPVAQ--------AAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGD 779
K AK AK AKKA + + +K + PA A A K
Sbjct: 81 KKAVAKKATAKKVAAKKVVAKKTVAKKAAAKKPAAKKAVAKKAVARKPAAKKAVAKKAAS 140
Query: 780 LSSQEASEKRSP 791
+ +
Sbjct: 141 TCHKNHKHTAAC 152
Score = 33.6 bits (76), Expect = 0.28
Identities = 31/119 (26%), Positives = 47/119 (39%), Gaps = 2/119 (1%)
Query: 688 EKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKA 747
+K + K A A A AAKKA + +KPA + AAK AAKKA
Sbjct: 6 KKRSSKKTAAKKA-AVRKPAAKKAAAKKTVVRKVAAKKPAARKTVAKKTVAAKKPAAKKA 64
Query: 748 ESSSDDDSSSEDEKPAVKAPA-KPVAQAAKPGDLSSQEASEKRSPNDFALWKKSKAGEP 805
+ + A KA A K A+ + +++ K++ KK+ A +
Sbjct: 65 AKKAVAKKVVAKKPVAKKAVAKKATAKKVAAKKVVAKKTVAKKAAAKKPAAKKAVAKKA 123
Score = 32.1 bits (72), Expect = 0.79
Identities = 33/126 (26%), Positives = 42/126 (33%), Gaps = 20/126 (15%)
Query: 668 KPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAH---AAEPAAAKKAESSSDDDSSSEDE 724
K AAKKA + + A KA AK AA+ AKK + + +
Sbjct: 57 KKPAAKKAAKKAVAKKVVAKKPVAKKAVAKKATAKKVAAKKVVAKKTVA-----KKAAAK 111
Query: 725 KPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQE 784
KPA K A A KPAA K K A K A ++S
Sbjct: 112 KPAAKKAVAKKAVARKPAAKKAV------------AKKAASTCHKNHKHTAACKRVASSS 159
Query: 785 ASEKRS 790
A+
Sbjct: 160 ATRAAC 165
Score = 30.5 bits (68), Expect = 2.6
Identities = 29/114 (25%), Positives = 35/114 (30%), Gaps = 9/114 (7%)
Query: 668 KPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAH--------AAEPAAAKKAESSSDDDS 719
K AA K + A KA AK VA A+ AAAKK +
Sbjct: 62 KKAAKKAVAKKVVAKKPVAKKAVAKKATAKKVAAKKVVAKKTVAKKAAAKKPAAKKAVAK 121
Query: 720 SSEDEKPAV-KTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVA 772
+ KPA K AK A A SS+ K+ P
Sbjct: 122 KAVARKPAAKKAVAKKAASTCHKNHKHTAACKRVASSSATRAACGSKSRVNPAH 175
>gnl|CDD|99899 cd05838, WHSC1_related, The PWWP domain was first identified in the
WHSC1 (Wolf-Hirschhorn syndrome candidate 1) protein, a
protein implicated in Wolf-Hirschhorn syndrome (WHS).
When translocated, WHSC1 plays a role in lymphoid
multiple myeloma (MM) disease, also known as
plasmacytoma. WHCS1 proteins typically contain two
copies of the PWWP domain. The PWWP domain, named for a
conserved Pro-Trp-Trp-Pro motif, is a small domain
consisting of 100-150 amino acids. The PWWP domain is
found in numerous proteins that are involved in cell
division, growth and differentiation. Most PWWP-domain
proteins seem to be nuclear, often DNA-binding, proteins
that function as transcription factors regulating a
variety of developmental processes.
Length = 95
Score = 32.7 bits (75), Expect = 0.15
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 7/55 (12%)
Query: 192 YPPWPARIEGLADETPNRL-KYH------IFFYGTRETGICRQDELFPYTEFKDK 239
+ WPA I + PN H + F+GT + + +FPY E
Sbjct: 14 FRWWPAIICDPREVPPNIQVLRHCIGEFCVMFFGTHDYYWVHRGRVFPYQEGDKG 68
>gnl|CDD|218597 pfam05466, BASP1, Brain acid soluble protein 1 (BASP1 protein).
This family consists of several brain acid soluble
protein 1 (BASP1) or neuronal axonal membrane protein
NAP-22. The BASP1 is a neuron enriched Ca(2+)-dependent
calmodulin-binding protein of unknown function.
Length = 233
Score = 34.8 bits (79), Expect = 0.17
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 662 ASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSS 721
+S A AK+ E S ++ + + E PA A ++ A A ++ SS + + S
Sbjct: 133 SSQPAESAAPAKEEEKSKEEGEAKKTEAPAAAAQET----KSDAAPASDSKPSSSEAAPS 188
Query: 722 EDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVK 765
E PA A+A+ PAA + S+ +++ D+ AV+
Sbjct: 189 SKETPAATEAPSSTAKASAPAAPAEEVKPSEAPAANSDQTVAVQ 232
Score = 33.6 bits (76), Expect = 0.38
Identities = 40/145 (27%), Positives = 62/145 (42%), Gaps = 21/145 (14%)
Query: 659 EIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAK---------PVAHAAEPAA-A 708
E A+ K A +A++ S E E A PA + AE AA A
Sbjct: 84 EEAPKAEPEKTEGAAEAKAEPPKASDPEQEPAAAPGPAAGGEAPKASEASSQPAESAAPA 143
Query: 709 KKAESSSDDDSSSEDEKPAV-----KTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPA 763
K+ E S ++ + + E PA K+ A P A +KP++++ A SS + +++E
Sbjct: 144 KEEEKSKEEGEAKKTEAPAAAAQETKSDAAP-ASDSKPSSSEAAPSSKETPAATEAPSST 202
Query: 764 VK-----APAKPVAQAAKPGDLSSQ 783
K APA+ V + P S Q
Sbjct: 203 AKASAPAAPAEEVKPSEAPAANSDQ 227
Score = 33.3 bits (75), Expect = 0.46
Identities = 38/158 (24%), Positives = 57/158 (36%), Gaps = 13/158 (8%)
Query: 661 VASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPA-KPVAHAAEPAAAKKAESSSDDDS 719
V A+ KP + ++ ++ E E A K A K E AA KAE D
Sbjct: 51 VKEAKEEKPDKDAQDTANKTEEKEGEKEAAAAKEEAPKAEPEKTEGAAEAKAEPPKASDP 110
Query: 720 SSE---DEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPV----- 771
E PA A ++A+ A A + ++ S E E +APA
Sbjct: 111 EQEPAAAPGPAAGGEAPKASEASSQPAESAAPAKEEEKSKEEGEAKKTEAPAAAAQETKS 170
Query: 772 ----AQAAKPGDLSSQEASEKRSPNDFALWKKSKAGEP 805
A +KP + +S++ A +KA P
Sbjct: 171 DAAPASDSKPSSSEAAPSSKETPAATEAPSSTAKASAP 208
Score = 31.3 bits (70), Expect = 1.8
Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 10/122 (8%)
Query: 672 AKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSD--------DDSSSED 723
AK + ++ ++ E+ P A+ A E AK+ + D ++ E
Sbjct: 18 AKDKDKKAEGAATEEEGTPKENEEAQAAAETTEVKEAKEEKPDKDAQDTANKTEEKEGEK 77
Query: 724 EKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQ 783
E A K A P A+ K A +A++ S E E A PA +A K + SSQ
Sbjct: 78 EAAAAKEEA-PKAEPEKTEGAAEAKAEPPKASDPEQEPAAAPGPAAG-GEAPKASEASSQ 135
Query: 784 EA 785
A
Sbjct: 136 PA 137
Score = 31.0 bits (69), Expect = 2.3
Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 5/120 (4%)
Query: 673 KKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSD-DDSSSEDEKPAVKTP 731
KKAE + ++ E+ P A+ A E AK+ + D D++++ E+ +
Sbjct: 23 KKAEGA----ATEEEGTPKENEEAQAAAETTEVKEAKEEKPDKDAQDTANKTEEKEGEKE 78
Query: 732 AKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRSP 791
A + A A +K E +++ + + PA AA + EAS + +
Sbjct: 79 AAAAKEEAPKAEPEKTEGAAEAKAEPPKASDPEQEPAAAPGPAAGGEAPKASEASSQPAE 138
Score = 30.2 bits (67), Expect = 4.8
Identities = 30/127 (23%), Positives = 52/127 (40%), Gaps = 8/127 (6%)
Query: 666 TPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEK 725
TPK +A + + + +++EKP A E K+A ++ ++ +E EK
Sbjct: 35 TPKENEEAQAAAETTEVKEAKEEKPDKDAQDTA-NKTEEKEGEKEAAAAKEEAPKAEPEK 93
Query: 726 PAVKTPAKPVAQAA-----KPAAAKKAESSSDDDSSSEDEKPAVK--APAKPVAQAAKPG 778
AK A +PAAA + + +SE + APAK ++ + G
Sbjct: 94 TEGAAEAKAEPPKASDPEQEPAAAPGPAAGGEAPKASEASSQPAESAAPAKEEEKSKEEG 153
Query: 779 DLSSQEA 785
+ EA
Sbjct: 154 EAKKTEA 160
>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component,
dihydrolipoamide succinyltransferase. This model
represents an Actinobacterial clade of E2 enzyme, a
component of the 2-oxoglutarate dehydrogenase complex
involved in the TCA cycle. These proteins have multiple
domains including the catalytic domain (pfam00198), one
or two biotin domains (pfam00364) and an E3-component
binding domain (pfam02817).
Length = 579
Score = 35.0 bits (80), Expect = 0.19
Identities = 29/120 (24%), Positives = 41/120 (34%), Gaps = 14/120 (11%)
Query: 663 SAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAE-----PAAAKKAESSSDD 717
S P PAA + + K A A A PV+ P K A+ D
Sbjct: 223 SEPAPDPAARAPHAAPDPPAPAPAPAKTAAPAAAAPVSSGDSGPYVTPLVRKLAKDKGVD 282
Query: 718 DSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKP 777
S+ + + + V AAK A +A +++ A APA P A A
Sbjct: 283 LSTVKGTGVGGRIRKQDVLAAAKAAEEARAAAAAP---------AAAAAPAAPAAAAKPA 333
Score = 33.1 bits (75), Expect = 0.78
Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 10/96 (10%)
Query: 665 QTPKPAAAKKAESSSDDDSSSE---------DEKPAVKAPAKPVAHA-AEPAAAKKAESS 714
+ P P A E + +D + E D A PA+ A A +E + + +
Sbjct: 171 EIPSPVAGTLLEIRAPEDDTVEVGTVLAIIGDANAAPAEPAEEEAPAPSEAGSEPAPDPA 230
Query: 715 SDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESS 750
+ ++ D PAK A AA +
Sbjct: 231 ARAPHAAPDPPAPAPAPAKTAAPAAAAPVSSGDSGP 266
Score = 30.4 bits (68), Expect = 5.6
Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 3/62 (4%)
Query: 717 DDSSSEDEKPAVKTPAK---PVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQ 773
D +++ E + PA A PAA + + K A A A PV+
Sbjct: 202 DANAAPAEPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAPAPAKTAAPAAAAPVSS 261
Query: 774 AA 775
Sbjct: 262 GD 263
Score = 29.6 bits (66), Expect = 8.9
Identities = 32/131 (24%), Positives = 49/131 (37%), Gaps = 9/131 (6%)
Query: 653 VSEYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAE-PAAAKKA 711
V + I + P A ++A + S+ S PA +AP A PA AK A
Sbjct: 193 VGTVLAIIGDANAAPAEPAEEEAPAPSEA-GSEPAPDPAARAPHAAPDPPAPAPAPAKTA 251
Query: 712 ESSSDDDSSSEDEKPAVKTPAKPVAQ-------AAKPAAAKKAESSSDDDSSSEDEKPAV 764
++ SS D P V + +A+ K D ++++ + A
Sbjct: 252 APAAAAPVSSGDSGPYVTPLVRKLAKDKGVDLSTVKGTGVGGRIRKQDVLAAAKAAEEAR 311
Query: 765 KAPAKPVAQAA 775
A A P A AA
Sbjct: 312 AAAAAPAAAAA 322
>gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional.
Length = 566
Score = 35.1 bits (80), Expect = 0.19
Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 11/114 (9%)
Query: 657 IPEIVASAQT--PKPAAAKKAESSSDDDSSSEDEKPAVKAP---AKPVAHAAE---PAAA 708
IPE+ SA T P PA A +S D + A + P P A+E PA A
Sbjct: 28 IPELHTSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPAPA 87
Query: 709 KKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKP 762
+S D + P + KP A A +AA+ E+ +D +S+ +KP
Sbjct: 88 PHQAASRAPDPAV---APQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKP 138
Score = 32.4 bits (73), Expect = 1.4
Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 7/127 (5%)
Query: 703 AEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKP 762
+PA A +S D + A + P +AQA PAA++K + + ++
Sbjct: 40 PDPAPAPHQAASRAPDPAVAPTSAASRKPD--LAQAPTPAASEKFDPAPAPHQAASRAPD 97
Query: 763 AVKAPAKPVAQAAKPGDLSSQEASEKRSPNDFALWKKSKAGEPWWSS-----PWGEGRPG 817
AP A + + A +P D SK +P + P+ R
Sbjct: 98 PAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAHTQHSPPPFAYTRSM 157
Query: 818 WHIECSV 824
HI C+
Sbjct: 158 EHIACTH 164
>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase;
Validated.
Length = 633
Score = 35.0 bits (81), Expect = 0.20
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 683 SSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPA 732
++ K APA A A PAAA A++ + + D TP
Sbjct: 285 PAAAPAKQEAAAPAPAAAKAEAPAAAPAAKAEGKSEFAENDAYVHA-TPL 333
Score = 34.6 bits (80), Expect = 0.31
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 719 SSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKP 762
++ K PA A+A PAAA A++ + + D
Sbjct: 285 PAAAPAKQEAAAPAPAAAKAEAPAAAPAAKAEGKSEFAENDAYV 328
>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex
dihydrolipoamide succinyltransferase (E2 component).
This model describes the TCA cycle 2-oxoglutarate system
E2 component, dihydrolipoamide succinyltransferase. It
is closely related to the pyruvate dehydrogenase E2
component, dihydrolipoamide acetyltransferase. The seed
for this model includes mitochondrial and Gram-negative
bacterial forms. Mycobacterial candidates are highly
derived, differ in having and extra copy of the
lipoyl-binding domain at the N-terminus. They score
below the trusted cutoff, but above the noise cutoff and
above all examples of dihydrolipoamide acetyltransferase
[Energy metabolism, TCA cycle].
Length = 403
Score = 34.7 bits (80), Expect = 0.22
Identities = 27/106 (25%), Positives = 38/106 (35%), Gaps = 6/106 (5%)
Query: 644 VLPPTVLTRVSEYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVA--H 701
V VL + E A+A P + +K E+ + +++ A + P A
Sbjct: 65 VESGQVLAILEE---GNDATAAPPAKSGEEKEETPAASAAAAPTA-AANRPSLSPAARRL 120
Query: 702 AAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKA 747
A E A + E KT A AQ PAAA KA
Sbjct: 121 AKEHGIDLSAVPGTGVTGRVTKEDIIKKTEAPASAQQPAPAAAAKA 166
Score = 32.4 bits (74), Expect = 1.1
Identities = 19/106 (17%), Positives = 31/106 (29%), Gaps = 3/106 (2%)
Query: 686 EDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAK 745
E PAK E AA A + + + A + + +
Sbjct: 76 EGNDATAAPPAKSGEEKEETPAASAAAAPTAAANRPSLSPAARRLAKEHGIDLSAVPGTG 135
Query: 746 KAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRSP 791
+ +D + E PA P A A P ++ E+R
Sbjct: 136 VTGRVTKEDIIKKTEAPASAQQPAPAAAAKAP---ANFTRPEERVK 178
>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta;
Provisional.
Length = 464
Score = 34.5 bits (80), Expect = 0.24
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 662 ASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAA 708
AS PAAA +A +++ +++ K A APA P A AAE AA
Sbjct: 84 ASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAAD 130
Score = 31.8 bits (73), Expect = 2.0
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 686 EDEKPAVKAPA-KPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKP 734
E A APA A AA PAAA A + + + PA + A P
Sbjct: 82 ESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADP 131
Score = 30.7 bits (70), Expect = 3.9
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 736 AQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKP 777
A PAAA +A +++ +++ K A APA P A AA+
Sbjct: 86 DAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEV 127
Score = 30.7 bits (70), Expect = 4.4
Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 722 EDEKPAVKTPA-KPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKP 770
E A PA A AA PAAA A + + + PA + A P
Sbjct: 82 ESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADP 131
>gnl|CDD|237803 PRK14724, PRK14724, DNA topoisomerase III; Provisional.
Length = 987
Score = 34.9 bits (80), Expect = 0.25
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 12/81 (14%)
Query: 667 PKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKP 726
P+ AA KA ++S A A A+ AAAKK + + ++++ +
Sbjct: 856 PRKTAAAKAGAAS---------AAFGGTVAVKAAKPAKKAAAKKVAAKT---AAAKTPRK 903
Query: 727 AVKTPAKPVAQAAKPAAAKKA 747
A K A P A KP+AA A
Sbjct: 904 AAKKKAAPPAAGLKPSAALAA 924
Score = 34.2 bits (78), Expect = 0.38
Identities = 29/94 (30%), Positives = 35/94 (37%), Gaps = 19/94 (20%)
Query: 686 EDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAK 745
E E K P + A A AA+ + ++ KPA K AK V AAK AAAK
Sbjct: 846 EFEPRESKFPPRKTAAAKAGAASAAFGGTVAVKAA----KPAKKAAAKKV--AAKTAAAK 899
Query: 746 KAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGD 779
+ A K A P A KP
Sbjct: 900 TP-------------RKAAKKKAAPPAAGLKPSA 920
Score = 29.9 bits (67), Expect = 9.1
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 722 EDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLS 781
E E K P + A A AA+ + ++ KPA KA AK VA
Sbjct: 846 EFEPRESKFPPRKTAAAKAGAASAAFGGTVAVKAA----KPAKKAAAKKVAAKTAAAKTP 901
Query: 782 SQEASEKRSP 791
+ A +K +P
Sbjct: 902 RKAAKKKAAP 911
>gnl|CDD|236712 PRK10547, PRK10547, chemotaxis protein CheA; Provisional.
Length = 670
Score = 34.7 bits (80), Expect = 0.25
Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 8/79 (10%)
Query: 681 DDSSSEDEKPAV--------KAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPA 732
S +ED+ AV + + A + A + E S +
Sbjct: 201 PGSVAEDDITAVLCFVIEADQITFETAVAAPQEKAEETTEVVEVSPKISVPPVLKLAAEQ 260
Query: 733 KPVAQAAKPAAAKKAESSS 751
P + + A+ +ES+S
Sbjct: 261 APAGRVEREKTARSSESTS 279
Score = 30.5 bits (69), Expect = 5.3
Identities = 10/52 (19%), Positives = 16/52 (30%)
Query: 664 AQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSS 715
P+ A + E S + A P A+ +ES+S
Sbjct: 228 VAAPQEKAEETTEVVEVSPKISVPPVLKLAAEQAPAGRVEREKTARSSESTS 279
>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown].
Length = 931
Score = 34.8 bits (80), Expect = 0.25
Identities = 21/98 (21%), Positives = 30/98 (30%), Gaps = 3/98 (3%)
Query: 649 VLTRVSEYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAV-KAPAKPVAHAAEPAA 707
L + + E A E++ + E A + P A+
Sbjct: 31 ELRELRSLVAEGAAGPVAKAAEQMAAPEAAEAAPLPAAAESIASPEVPPPVPPAPAQEGE 90
Query: 708 AKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAK 745
A AE S + S PA P +P A AAA
Sbjct: 91 APAAEQPSAVPAPSAAPAPA--EPVEPSLAANPFAAAI 126
Score = 34.4 bits (79), Expect = 0.38
Identities = 24/97 (24%), Positives = 32/97 (32%), Gaps = 12/97 (12%)
Query: 653 VSEYIPEIVASA--QTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKK 710
V+E VA A Q P AA+ A + +S + E P PA A A
Sbjct: 39 VAEGAAGPVAKAAEQMAAPEAAEAAPLPAAAESIASPEVPPPVPPAPAQEGEAPAAEQPS 98
Query: 711 AESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKA 747
A + A PA+PV + A
Sbjct: 99 AVPA----------PSAAPAPAEPVEPSLAANPFAAA 125
Score = 32.5 bits (74), Expect = 1.3
Identities = 25/102 (24%), Positives = 33/102 (32%), Gaps = 11/102 (10%)
Query: 675 AESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKP 734
E + S E A AK A P AA+ A + +S + E P PA
Sbjct: 28 IERELRELRSLVAE-GAAGPVAKAAEQMAAPEAAEAAPLPAAAESIASPEVPPPVPPAPA 86
Query: 735 VAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAK 776
A A A + A APA+PV +
Sbjct: 87 QEGEAPAAEQPSAVPA----------PSAAPAPAEPVEPSLA 118
Score = 31.7 bits (72), Expect = 2.5
Identities = 28/120 (23%), Positives = 40/120 (33%), Gaps = 10/120 (8%)
Query: 691 AVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESS 750
V A A V +A+ + + E + S E A AK Q A P AA+ A
Sbjct: 8 LVAAAAFEVITSAQLSRIGRIERELRELRSLVAE-GAAGPVAKAAEQMAAPEAAEAAPLP 66
Query: 751 SDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRSPNDFALWKKSKAGEPWWSSP 810
+ +S + E P PA A + S + +P EP S
Sbjct: 67 AAAESIASPEVPPPVPPAPAQEGEAPAAEQPSAVPAPSAAP---------APAEPVEPSL 117
Score = 30.2 bits (68), Expect = 6.0
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 672 AKKAESSSDDDSSSEDEKPAV-KAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKT 730
+ AE ++ + + ++ A A A P+ AAE A+ + + E E PA +
Sbjct: 37 SLVAEGAAGPVAKAAEQMAAPEAAEAAPLPAAAESIASPEVPPPVPPAPAQEGEAPAAEQ 96
Query: 731 PAKPVAQAAKPAAAKKAESS 750
P+ A +A PA A+ E S
Sbjct: 97 PSAVPAPSAAPAPAEPVEPS 116
>gnl|CDD|219715 pfam08070, DTHCT, DTHCT (NUC029) region. The DTCHT region is the
C-terminal part of DNA gyrases B / topoisomerase IV /
HATPase proteins. This region is composed of quite low
complexity sequence.
Length = 95
Score = 32.2 bits (73), Expect = 0.26
Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 7/68 (10%)
Query: 703 AEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKP 762
A P K+ +SD DS + P KP K + +K SS + DS+ +
Sbjct: 2 AAPKGKKRETVNSDSDSEA-------GVPKKPAPPKGKGSKKRKPSSSDESDSNFGKKVS 54
Query: 763 AVKAPAKP 770
K
Sbjct: 55 KSATSKKS 62
Score = 31.8 bits (72), Expect = 0.38
Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 20/89 (22%)
Query: 669 PAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAV 728
P K+ +SD DS + P KP + + +K SS + DS+
Sbjct: 4 PKGKKRETVNSDSDSEA-------GVPKKPAPPKGKGSKKRKPSSSDESDSN-------- 48
Query: 729 KTPAKPVAQAAKPAAAKKAESSSDDDSSS 757
+ +K A +KK++ DDD S
Sbjct: 49 -----FGKKVSKSATSKKSKKGDDDDFPS 72
Score = 27.6 bits (61), Expect = 9.1
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 11/56 (19%)
Query: 666 TPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSS 721
PK +KK + SS D+S S K K+ A +KK++ DDD S
Sbjct: 28 PPKGKGSKKRKPSSSDESDSNFGKKVSKS-----------ATSKKSKKGDDDDFPS 72
>gnl|CDD|225368 COG2811, NtpF, Archaeal/vacuolar-type H+-ATPase subunit H [Energy
production and conversion].
Length = 108
Score = 32.4 bits (74), Expect = 0.27
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 58 ETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKKIPPSEMFKM 106
E A++ + L EA + AE+E ++ A +EA K ++ +
Sbjct: 49 EEEAEKLAQEILEEAREEAEEEAEEILAEAEKEASAILSKAAEGKVVEA 97
Score = 28.9 bits (65), Expect = 4.3
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 61 AKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKKI 98
A+E+ + + EAE+ AEK ++ A +EA+E ++I
Sbjct: 37 AREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAEEI 74
>gnl|CDD|179334 PRK01770, PRK01770, sec-independent translocase; Provisional.
Length = 171
Score = 33.3 bits (76), Expect = 0.28
Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 13/107 (12%)
Query: 658 PEIVASAQTPKPAAAK-KAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSD 716
PE+ AS K AA K +++D + DE + P K E++ +
Sbjct: 76 PELKASVDELKQAAESMKRSYAANDPEKASDEAHTIHNPV-----------VKDNEAAHE 124
Query: 717 DDSSSEDEKPAVKTPAKPV-AQAAKPAAAKKAESSSDDDSSSEDEKP 762
+ + + A KP A AE + S S +KP
Sbjct: 125 GVTPAAAQTQASSPEQKPETTPEPVVKPAADAEPKTAAPSPSSSDKP 171
>gnl|CDD|217884 pfam04086, SRP-alpha_N, Signal recognition particle, alpha subunit,
N-terminal. SRP is a complex of six distinct
polypeptides and a 7S RNA that is essential for
transferring nascent polypeptide chains that are
destined for export from the cell to the translocation
apparatus of the endoplasmic reticulum (ER) membrane.
SRP binds hydrophobic signal sequences as they emerge
from the ribosome, and arrests translation.
Length = 272
Score = 34.0 bits (78), Expect = 0.31
Identities = 38/177 (21%), Positives = 58/177 (32%), Gaps = 23/177 (12%)
Query: 597 KLLTAVRDPLSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEY 656
KLL VR D L+ + + T + ++ F + + +L
Sbjct: 56 KLLDDVRTIFRD----LYKNQLRQEKARTTYDEEFDEYFDQQLREL-------------- 97
Query: 657 IPEIVASAQTPKPAAAKKAESS--SDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESS 714
E + Q P A + E S S S E+ + K +A ESS
Sbjct: 98 --EKESKKQAKSPKAMRTFEESKKSKKTVDSMIERKPKEPGLKRKQRKKAQESATSPESS 155
Query: 715 SDDDSSSEDEKPAVKTPAKPVAQA-AKPAAAKKAESSSDDDSSSEDEKPAVKAPAKP 770
+S AK AK AA + +SS D+ S + + KA K
Sbjct: 156 PSSTPNSSRPSTPHLLKAKEGPSRRAKKAAKLSSTASSGDEKSPKSKAAPKKAGKKM 212
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 34.6 bits (80), Expect = 0.32
Identities = 26/110 (23%), Positives = 39/110 (35%), Gaps = 16/110 (14%)
Query: 659 EIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDD 718
E VA+ + A+K E + D +E P +K + +S+ D
Sbjct: 468 EKVANKLLKRSEKAQKEEEEEELD----EENPWLKTTSS------------VGKSAKKQD 511
Query: 719 SSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPA 768
S + K K A K KK E S D D DE+ ++K
Sbjct: 512 SKKKSSSKLDKAANKISKAAVKVKKKKKKEKSIDLDDDLIDEEDSIKLDV 561
Score = 31.2 bits (71), Expect = 3.4
Identities = 26/139 (18%), Positives = 43/139 (30%), Gaps = 11/139 (7%)
Query: 676 ESSSDDDSSSEDEK----------PAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEK 725
E SD++ + E K + A+ E K + SD++ EDE+
Sbjct: 404 EEESDEEENEEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKESDEEEELEDEE 463
Query: 726 PAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEA 785
A + A+K E + D + K Q +K S +
Sbjct: 464 EAKVEKVAN-KLLKRSEKAQKEEEEEELDEENPWLKTTSSVGKSAKKQDSKKKSSSKLDK 522
Query: 786 SEKRSPNDFALWKKSKAGE 804
+ + KK K E
Sbjct: 523 AANKISKAAVKVKKKKKKE 541
>gnl|CDD|178377 PLN02778, PLN02778, 3,5-epimerase/4-reductase.
Length = 298
Score = 34.0 bits (78), Expect = 0.33
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 448 EYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQTSKILKDIGEVMGAFESKMK 507
+Y + + T+ + K+I R N NE+ T+K+ ++ E++ ES +K
Sbjct: 235 DYIDPSFTWKNFTLEEQAKVIVAPRSN---------NELDTTKLKREFPELLPIKESLIK 285
Query: 508 LVTDPDKLT 516
V +P+K T
Sbjct: 286 YVFEPNKKT 294
>gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino
acyl-tRNA synthetase. Class I amino acyl-tRNA
synthetase (aaRS) catalytic core domain. These enzymes
are mostly monomers which aminoacylate the 2'-OH of the
nucleotide at the 3' of the appropriate tRNA. The core
domain is based on the Rossman fold and is responsible
for the ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 143
Score = 32.8 bits (75), Expect = 0.33
Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 3/49 (6%)
Query: 817 GWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAE--GLPTHDQ 863
+ + + + DIH GG D H + L + G P
Sbjct: 77 EYMFLQAADFLLLYETECDIHLGGSDQLG-HIELGLELLKKAGGPARPF 124
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 34.4 bits (80), Expect = 0.35
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 53 KLVDKETLAKEKEAKR-LAEAEKAAEKERKKAELAAAQEAKEAQKKI 98
K+ + + E+EAKR L EA+K AE +K+A L A +E + + +
Sbjct: 27 KIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEF 73
>gnl|CDD|216095 pfam00748, Calpain_inhib, Calpain inhibitor. This region is found
multiple times in calpain inhibitor proteins.
Length = 131
Score = 32.5 bits (74), Expect = 0.37
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 662 ASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDD 717
+++ P P A KK E + +S E V A + P +A P KK + SDD
Sbjct: 11 SASPPPSPTAKKKKEEAEKTAASGE----VVSAQSAPSVRSAAPPPEKKRDKMSDD 62
>gnl|CDD|184900 PRK14907, rplD, 50S ribosomal protein L4; Provisional.
Length = 295
Score = 33.8 bits (77), Expect = 0.39
Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 12/99 (12%)
Query: 683 SSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVA------ 736
++E++KPA K A AK + + ++ + +VKT K V
Sbjct: 11 KTTEEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVTVKFEKT 70
Query: 737 ------QAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAK 769
AK K+A S+ ++S++ K K P K
Sbjct: 71 ESVKKESVAKKTVKKEAVSAEVFEASNKLFKNTSKLPKK 109
Score = 32.2 bits (73), Expect = 1.1
Identities = 23/107 (21%), Positives = 31/107 (28%), Gaps = 3/107 (2%)
Query: 693 KAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSD 752
K K +PAA K S + + + K AK A+ K + K
Sbjct: 6 KTTKKKTTEEKKPAAKKATTSKETAKTKKTAKTTSTKA-AKKAAKVKKTKSVKTTTKKVT 64
Query: 753 DDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRSPNDFALWKK 799
E + K + EAS K N L KK
Sbjct: 65 VK--FEKTESVKKESVAKKTVKKEAVSAEVFEASNKLFKNTSKLPKK 109
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 33.2 bits (76), Expect = 0.47
Identities = 32/163 (19%), Positives = 47/163 (28%), Gaps = 29/163 (17%)
Query: 629 KHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDE 688
H E ++ L V +L P + P K +E E
Sbjct: 26 LHQEDFVGIELVPLAV---FLLAAKVLEAPTEEPQPEPEPPEEQPK--------PPTEPE 74
Query: 689 KPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAE 748
P P KP KK + KP K KP + KP + A+
Sbjct: 75 TPPEPTPPKPKEKPKPEKKPKKPKPK-------PKPKPKPKPKVKPQPKPKKPPSKTAAK 127
Query: 749 SSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRSP 791
+ + A PA+P + A+ G + AS
Sbjct: 128 APA-----------APNQPARPPSAASASGAATGPSASYLSGL 159
>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional.
Length = 226
Score = 33.1 bits (76), Expect = 0.51
Identities = 25/102 (24%), Positives = 34/102 (33%), Gaps = 8/102 (7%)
Query: 681 DDSSSEDEKPAVKA--PAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQA 738
D D PA P +P AAE A A + S D ++ V+ PV
Sbjct: 48 GDRDEPDMMPAATQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPP 107
Query: 739 A-KPAAAKKAESSSDDDSSSEDE-----KPAVKAPAKPVAQA 774
KP K + + KP V+ A P +A
Sbjct: 108 KPKPVEKPKPKPKPQQKVEAPPAPKPEPKPVVEEKAAPTGKA 149
>gnl|CDD|222940 PHA02880, PHA02880, hypothetical protein; Provisional.
Length = 189
Score = 32.6 bits (74), Expect = 0.57
Identities = 22/110 (20%), Positives = 46/110 (41%), Gaps = 7/110 (6%)
Query: 386 YLTILSEFRD-NIRTEARLIKSTEILNQCDRLRDEVLPNVGVRLEDIEGKSYITFDILRR 444
+L LS+ D + + RL+K+ EI+N+ +P++ L+ I+
Sbjct: 67 FLKSLSDRSDIDSIYKERLVKNLEIINEYRNKFPRTVPDILSILKKIQDV----ISNNDI 122
Query: 445 ILSEYF--NYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQTSKIL 492
+ ++ +Y + T ID+ + + YLF + ++ Q L
Sbjct: 123 EIKKFNSVDYYEKENIINTIIDEFKKRGDFEPYLFLQTLERQYSQIEGNL 172
>gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein. This family consists of
AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental
retardation syndrome) nuclear proteins. These proteins
have been linked to human diseases such as acute
lymphoblastic leukaemia and mental retardation. The
family also contains a Drosophila AF4 protein homologue
Lilliputian which contains an AT-hook domain.
Lilliputian represents a novel pair-rule gene that acts
in cytoskeleton regulation, segmentation and
morphogenesis in Drosophila.
Length = 1154
Score = 33.7 bits (77), Expect = 0.59
Identities = 27/100 (27%), Positives = 35/100 (35%), Gaps = 19/100 (19%)
Query: 674 KAESSSDDDSSSEDEKPAVK-APAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPA 732
K SS D D EKP + P + EPAA+ SSS S S +
Sbjct: 361 KLSSSEDSDEEQATEKPPSRNTPPSAPSSNPEPAASSSGSSSSSSGSESSSGSDS----- 415
Query: 733 KPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVA 772
++ESSS D +E + A P P
Sbjct: 416 -------------ESESSSSDSEENEPPRTASPEPEPPST 442
Score = 30.7 bits (69), Expect = 5.1
Identities = 19/143 (13%), Positives = 54/143 (37%), Gaps = 17/143 (11%)
Query: 648 TVLTRVSEYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAA 707
+L+R+ + + PKPA + S + EK + K
Sbjct: 705 DLLSRIPGHPYK---KGVPPKPAEKDSLSAPKKQTSKTASEKSSSK-------------- 747
Query: 708 AKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAP 767
K+ + ++ E +K ++ + + ++ + + + SS E+ + +P
Sbjct: 748 GKRKHKNDEEADKIESKKQRLEEKSSSCSPSSSSSHHHSSSNKESRKSSRNKEEEMLPSP 807
Query: 768 AKPVAQAAKPGDLSSQEASEKRS 790
+ P++ ++ + S++ ++
Sbjct: 808 SSPLSSSSPKPEHPSRKRPRRQE 830
>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal.
This domain is found to the N-terminus of bacterial
signal peptidases of the S49 family (pfam01343).
Length = 154
Score = 32.1 bits (74), Expect = 0.66
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 57 KETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKK 97
+ L +KE K +AEK AEK + KAE A++ E K
Sbjct: 59 EAALLDKKELKAWEKAEKKAEKAKAKAEKKKAKK--EEPKP 97
Score = 28.6 bits (65), Expect = 9.8
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 65 EAKRLAEAE-KAAEKERKKAELAAAQEAKEAQKKIPP 100
EA L + E KA EK KKAE A A+ K+ KK P
Sbjct: 59 EAALLDKKELKAWEKAEKKAEKAKAKAEKKKAKKEEP 95
>gnl|CDD|223436 COG0359, RplI, Ribosomal protein L9 [Translation, ribosomal
structure and biogenesis].
Length = 148
Score = 31.8 bits (73), Expect = 0.70
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 60 LAKE--KEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKKIP 99
LA K +L EA +A +++ ELA A+ KE +
Sbjct: 35 LAVPATKGNLKLLEARRAKLEKKAAEELAEAEALKEKLEGKT 76
>gnl|CDD|235026 PRK02292, PRK02292, V-type ATP synthase subunit E; Provisional.
Length = 188
Score = 32.3 bits (74), Expect = 0.75
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 56 DKETLAKEKEAKRLAEAEKAAEKERKK----AELAAAQEAKEAQKKI 98
+ E A+E R AEAE+ E+ R++ A+L A +E A+K++
Sbjct: 35 EAEADAEEILEDREAEAEREIEQLREQELSSAKLEAKRERLNARKEV 81
>gnl|CDD|216117 pfam00782, DSPc, Dual specificity phosphatase, catalytic domain.
Ser/Thr and Tyr protein phosphatases. The enzyme's
tertiary fold is highly similar to that of
tyrosine-specific phosphatases, except for a
"recognition" region.
Length = 131
Score = 31.5 bits (72), Expect = 0.78
Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 6/62 (9%)
Query: 451 NYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQTSKILKDIGEV---MGAFESKMK 507
IT+ +N+T + YL + + + I K + E + K
Sbjct: 16 KLGITHVINVTREVPNSNLNSGILYL---GIPVEDNHETNISKYLPEAVEFIDDAIQKGG 72
Query: 508 LV 509
V
Sbjct: 73 KV 74
>gnl|CDD|191249 pfam05279, Asp-B-Hydro_N, Aspartyl beta-hydroxylase N-terminal
region. This family includes the N-terminal regions of
the junctin, junctate and aspartyl beta-hydroxylase
proteins. Junctate is an integral ER/SR membrane calcium
binding protein, which comes from an alternatively
spliced form of the same gene that generates aspartyl
beta-hydroxylase and junctin. Aspartyl beta-hydroxylase
catalyzes the post-translational hydroxylation of
aspartic acid or asparagine residues contained within
epidermal growth factor (EGF) domains of proteins.
Length = 240
Score = 32.6 bits (74), Expect = 0.78
Identities = 18/104 (17%), Positives = 33/104 (31%), Gaps = 2/104 (1%)
Query: 667 PKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKP 726
P+ K + DD E V + H E A+ + + + S E+E
Sbjct: 130 PQLDEDKFLLAEDSDDRQETLEAGKVHEETEDSYHVEETASEQYKQDMKEKASEQENEDS 189
Query: 727 --AVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPA 768
V+ + A+ E + + S ++ K P
Sbjct: 190 KEPVEKAERTKAETDDVTEEDYDEEDNPVEDSKAIKEELAKEPV 233
>gnl|CDD|218883 pfam06075, DUF936, Plant protein of unknown function (DUF936).
This family consists of several hypothetical proteins
from Arabidopsis thaliana and Oryza sativa. The function
of this family is unknown.
Length = 564
Score = 33.3 bits (76), Expect = 0.79
Identities = 37/148 (25%), Positives = 52/148 (35%), Gaps = 10/148 (6%)
Query: 679 SDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQA 738
S + + D PA ++ A P+ SSS SS + + + A
Sbjct: 168 SFSELNLTDRTPAKVRSSRSELGAPSPSGGTSCPSSSGGRRSSIGSRRLRGSASLRKKVA 227
Query: 739 AKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRSPND----- 793
A K SSD SS + K+P K Q + + S + SP D
Sbjct: 228 VLSAPRKPGSRSSDCKSSPRARSSSAKSPFKSSIQR--KATKALSKLSLRASPKDTSKSS 285
Query: 794 ---FALWKKSKAGEPWWSSPWGEGRPGW 818
A KKS+A P S W +G W
Sbjct: 286 KSEVAPPKKSEAKVPSSSKKWTDGNVSW 313
Score = 29.8 bits (67), Expect = 8.6
Identities = 27/113 (23%), Positives = 36/113 (31%), Gaps = 6/113 (5%)
Query: 668 KPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAE---SSSDDDSSSEDE 724
A K SSD SS + K+P K A K S D SS+ E
Sbjct: 229 LSAPRKPGSRSSDCKSSPRARSSSAKSPFKSSIQRKATKALSKLSLRASPKDTSKSSKSE 288
Query: 725 KPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVK---APAKPVAQA 774
K V ++K S S S+ K A++ K +A
Sbjct: 289 VAPPKKSEAKVPSSSKKWTDGNVSWDSLPSSLSKLGKEALRQRDVAQKAALEA 341
>gnl|CDD|227507 COG5180, PBP1, Protein interacting with poly(A)-binding protein
[RNA processing and modification].
Length = 654
Score = 33.2 bits (75), Expect = 0.79
Identities = 34/164 (20%), Positives = 54/164 (32%), Gaps = 18/164 (10%)
Query: 647 PTVLTRVSEYIPEIVASAQTPKPAAAKKAESSSDDDSS----SEDEKPAVKAPAKPVAHA 702
R E ++ + KP A E+ S S S EK K ++
Sbjct: 265 DDGTKRKMVIEIEGLSLLENRKPEAVSAPEAVSPQSKSEGPSSGQEKEKQIKEKKSFSYG 324
Query: 703 ---------AEPAAAKKAESSSDDDSSSEDEKPAVKTP--AKPVAQAAKPAAAKKAESSS 751
K++ S D SS + K K P AK V+ A K + KK S
Sbjct: 325 WKHTKFDSSKNLLEVIKSKFKSLFDISSGELKWGSKPPWEAKAVSIATKVSKPKK--ESV 382
Query: 752 DDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRSPNDFA 795
S + + P+ K + + + + S ++ ND
Sbjct: 383 RSGSKAAKKSPSTK-HTTRSSTSLRRRNHGSFFGAKNPHTNDAK 425
>gnl|CDD|237019 PRK11907, PRK11907, bifunctional 2',3'-cyclic nucleotide
2'-phosphodiesterase/3'-nucleotidase precursor protein;
Reviewed.
Length = 814
Score = 33.3 bits (76), Expect = 0.80
Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 9/85 (10%)
Query: 664 AQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSED 723
T PA + +AE ++ +S + +E + P AA AE+ S +++
Sbjct: 31 IVTTTPATSTEAEQTTPVESDATEEADNTETP---------VAATTAAEAPSSSETAETS 81
Query: 724 EKPAVKTPAKPVAQAAKPAAAKKAE 748
+ + T AA +
Sbjct: 82 DPTSEATDTTTSEARTVTPAATETS 106
>gnl|CDD|215146 PLN02260, PLN02260, probable rhamnose biosynthetic enzyme.
Length = 668
Score = 33.2 bits (76), Expect = 0.82
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 9/54 (16%)
Query: 466 KIIKRARQNYLFEKHVQENEIQTSKILKDIGEVMGAFESKMKLVTDPDKLTMMK 519
K+I R N NE+ SK+ K+ E++ ES +K V +P+K T K
Sbjct: 624 KVIVAPRSN---------NEMDASKLKKEFPELLSIKESLIKYVFEPNKKTPAK 668
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 32.8 bits (75), Expect = 0.90
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 56 DKETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQK 96
+ E + K KR +A++ EK RK+ E A +E + +K
Sbjct: 265 EYEPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKK 305
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 32.9 bits (75), Expect = 0.93
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 57 KETLAKEKEAKRLAEAEKAAE-KERKKAELAAAQEAKEAQKK 97
KE AKEKE K+L A+K A+ K + + K+++KK
Sbjct: 24 KEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKK 65
>gnl|CDD|237555 PRK13914, PRK13914, invasion associated secreted endopeptidase;
Provisional.
Length = 481
Score = 32.9 bits (74), Expect = 0.94
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 12/69 (17%)
Query: 688 EKPAVKAPAKPVAHAAE-----PAAAKKA-----ESSSDDDSSSEDEKPAV--KTPAKPV 735
+K A+K A AE PAA K+A E+++ + +++E ++ +T K
Sbjct: 239 QKLAIKQTANTATPKAEVKTEAPAAEKQAAPVVKENTNTNTATTEKKETTTQQQTAPKAP 298
Query: 736 AQAAKPAAA 744
+AAKPA A
Sbjct: 299 TEAAKPAPA 307
Score = 30.2 bits (67), Expect = 5.6
Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 14/135 (10%)
Query: 664 AQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSE- 722
A TP P A+ E+ D +++ AVK+ A + + + + S ++ SSS
Sbjct: 179 ATTPAPKVAETKETPVVDQNATTH---AVKSGDTIWALSVKYGVSVQDIMSWNNLSSSSI 235
Query: 723 --DEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDL 780
+K A+K A A KAE ++ ++ + P VK + +
Sbjct: 236 YVGQKLAIKQTAN--------TATPKAEVKTEAPAAEKQAAPVVKENTNTNTATTEKKET 287
Query: 781 SSQEASEKRSPNDFA 795
++Q+ + ++P + A
Sbjct: 288 TTQQQTAPKAPTEAA 302
>gnl|CDD|224343 COG1426, COG1426, Predicted transcriptional regulator contains
Xre-like HTH domain [Function unknown].
Length = 284
Score = 32.4 bits (74), Expect = 0.96
Identities = 21/115 (18%), Positives = 36/115 (31%), Gaps = 3/115 (2%)
Query: 677 SSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSD--DDSSSEDEKPAVKTPAKP 734
+ D S + + + + + SS+ + P V AKP
Sbjct: 135 PTLPDQSVASVSQNSQDVSLATSSTTPSEGTTSASPSSATTSFTPTVTAIAPVVAPTAKP 194
Query: 735 VAQAAKPAAAKKAESSSDDDSSSEDEKPAV-KAPAKPVAQAAKPGDLSSQEASEK 788
V +PAA A S++ + AV A + A K L ++
Sbjct: 195 VTVPKQPAADLAASSTAPAAKEMATGQEAVPTAGSGVTTVAGKSAALVINFTADC 249
>gnl|CDD|180536 PRK06347, PRK06347, autolysin; Reviewed.
Length = 592
Score = 32.7 bits (74), Expect = 1.0
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 11/75 (14%)
Query: 694 APAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAK-----------PVAQAAKPA 742
APA + +AE K+A +++ ++++E +T K Q K
Sbjct: 56 APADEASKSAEANTTKEAPATATPENTTEPTVEPKQTETKEQTKTPEEKQPAAKQVEKAP 115
Query: 743 AAKKAESSSDDDSSS 757
A S+ D+ +SS
Sbjct: 116 AEPATVSNPDNATSS 130
>gnl|CDD|234045 TIGR02876, spore_yqfD, sporulation protein YqfD. YqfD is part of
the sigma-E regulon in the sporulation program of
endospore-forming Gram-positive bacteria. Mutation
results in a sporulation defect in Bacillus subtilis.
Members are found in all currently known
endospore-forming bacteria, including the genera
Bacillus, Symbiobacterium, Carboxydothermus,
Clostridium, and Thermoanaerobacter [Cellular processes,
Sporulation and germination].
Length = 382
Score = 32.3 bits (74), Expect = 1.1
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 7/88 (7%)
Query: 44 PSIGRPSAVKLVDKETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKKIPPSEM 103
+ R S + KET + KE E+A EK ++KAE KE +K++ P+
Sbjct: 300 FGLWRWSLPIEIVKETYYEVKEKVEKVTKEEAIEKAKEKAE-------KELKKELDPNAK 352
Query: 104 FKMETDKYSQFDETVLPPTVLTRVSEYI 131
+ + + + TV V E I
Sbjct: 353 IVSDKILSERVEGGKVKVTVHVEVEEDI 380
>gnl|CDD|220840 pfam10667, DUF2486, Protein of unknown function (DUF2486). This
family is made up of members from various Burkholderia
spp. The function is unknown.
Length = 245
Score = 32.2 bits (73), Expect = 1.2
Identities = 18/116 (15%), Positives = 35/116 (30%), Gaps = 3/116 (2%)
Query: 662 ASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSS 721
+ AA+ ++ + ++ + P V A P
Sbjct: 46 QIVPGAEQAASAAPVHAAREATADPEFVAVEPVPTPHVPAVALPGDTDAPAEPGAAPHVV 105
Query: 722 EDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKP 777
+ A++ P P A AA A A +++ D + + A A + A
Sbjct: 106 AERAAAMQAPL-PSALAADDPQAPPAGATAAD--AGDAAPDATPPAAGDASPPAAA 158
Score = 31.8 bits (72), Expect = 1.2
Identities = 22/104 (21%), Positives = 35/104 (33%), Gaps = 2/104 (1%)
Query: 675 AESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKP 734
A SSS D + D+ A + AE AA+ ++ + ++ + P
Sbjct: 24 ARSSSADAAGPHDDA-AEPVLTDQIVPGAEQAASAAPVHAAREATADPEFVAVEPVPTPH 82
Query: 735 VAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPG 778
V A P + A++AP P A AA
Sbjct: 83 VPAVALPGDTDAPAEPGAAPHVVAERAAAMQAPL-PSALAADDP 125
>gnl|CDD|221408 pfam12072, DUF3552, Domain of unknown function (DUF3552). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria, archaea and eukaryotes.
This domain is about 200 amino acids in length. This
domain is found associated with pfam00013, pfam01966.
This domain has a single completely conserved residue A
that may be functionally important.
Length = 201
Score = 31.7 bits (73), Expect = 1.2
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 53 KLVDKETLAKEKEAKR-LAEAEKAAEKERKKAELAAAQEAKEA 94
+ + + + E+EAK+ + EA+K AE +K+A L A +E +
Sbjct: 23 SIAEAKISSAEEEAKQIIEEAKKEAEALKKEALLEAKEEIHKL 65
>gnl|CDD|236698 PRK10475, PRK10475, 23S rRNA pseudouridine synthase F; Provisional.
Length = 290
Score = 32.0 bits (73), Expect = 1.2
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 717 DDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKP 770
++SSSE KP K AKP K K +++ + + K P +
Sbjct: 237 ENSSSEA-KPKAK--AKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTS-PGRK 286
Score = 31.6 bits (72), Expect = 1.7
Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 24/66 (36%)
Query: 681 DDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAK 740
++SSSE KP KA K A K +P VK K + +
Sbjct: 237 ENSSSEA-KPKAKAKPK-------TAGIK---------------RPVVKME-KTAEKGGR 272
Query: 741 PAAAKK 746
PA+ K
Sbjct: 273 PASNGK 278
Score = 29.3 bits (66), Expect = 8.4
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 753 DDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRSP 791
++SSSE KP KA K +P + A + P
Sbjct: 237 ENSSSEA-KPKAKAKPKTAG-IKRPVVKMEKTAEKGGRP 273
>gnl|CDD|226348 COG3827, COG3827, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 231
Score = 31.7 bits (72), Expect = 1.2
Identities = 35/140 (25%), Positives = 52/140 (37%), Gaps = 23/140 (16%)
Query: 647 PTVLTRVSEYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPA 706
P V R++E P + A T AA+ + + D AP A+
Sbjct: 52 PAVDARMNEQSP---SQAPTLAEVAARVRAAIARDA-----------APGPAAVAQAQNP 97
Query: 707 AAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKA 766
KK E +S ED + P A+ K AA + A +S D S+E AV
Sbjct: 98 DEKKNE-----PASIEDIVKEISGVIAPKARPPKNAAGENAPASEDRPESTE----AVTQ 148
Query: 767 PAKPVAQAAKPGDLSSQEAS 786
+ A + P + S+ A
Sbjct: 149 SEEATAIKSAPAAILSEAAG 168
Score = 30.2 bits (68), Expect = 4.1
Identities = 27/101 (26%), Positives = 35/101 (34%), Gaps = 1/101 (0%)
Query: 658 PEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKA-PAKPVAHAAEPAAAKKAESSSD 716
P A AQ P K +S +D A KA P K A PA+ + ES+
Sbjct: 86 PGPAAVAQAQNPDEKKNEPASIEDIVKEISGVIAPKARPPKNAAGENAPASEDRPESTEA 145
Query: 717 DDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSS 757
S E A A + A + S +SSS
Sbjct: 146 VTQSEEATAIKSAPAAILSEAAGRQVADAFGDLSLAFNSSS 186
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 32.6 bits (75), Expect = 1.2
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 63 EKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKKIPPSEMFKMETDKY 111
E K+L + ++ AEK+ +K E A K+A+ ++ ET K
Sbjct: 408 PAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKV 456
Score = 30.3 bits (69), Expect = 5.5
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 53 KLVDKETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKK 97
KL K+ A++K K EAEKAA K++ +A A+ KK
Sbjct: 413 KLRKKQRKAEKKAEK--EEAEKAAAKKKAEAAAKKAKGPDGETKK 455
Score = 29.9 bits (68), Expect = 7.7
Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 8/76 (10%)
Query: 704 EPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPA 763
+P A+ E ++ + S E+ ++ + + A+ A+KA ++ + A
Sbjct: 390 KPLLAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAA--------AKKKAEA 441
Query: 764 VKAPAKPVAQAAKPGD 779
AK K D
Sbjct: 442 AAKKAKGPDGETKKVD 457
Score = 29.5 bits (67), Expect = 9.2
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 9/55 (16%)
Query: 52 VKLVDKETLAKEKEAKRLAEAEKAAE---------KERKKAELAAAQEAKEAQKK 97
+KL DK LA+ +E + AE K KKAE A++A +K
Sbjct: 385 LKLHDKPLLAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKA 439
>gnl|CDD|226414 COG3898, COG3898, Uncharacterized membrane-bound protein [Function
unknown].
Length = 531
Score = 32.5 bits (74), Expect = 1.3
Identities = 23/82 (28%), Positives = 29/82 (35%), Gaps = 12/82 (14%)
Query: 658 PEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPA-VKAPAKPVAHAAEPAAAKKAESSSD 716
I A +P A D S+ KP V AP AA PA+AK AE +
Sbjct: 452 SAIEEPADELEPVAEAAETEGKGTDRSARAVKPIPVIAP------AAYPASAKTAEPAGF 505
Query: 717 -----DDSSSEDEKPAVKTPAK 733
DD + A K +
Sbjct: 506 FGRPPDDPGVRRDGAAEKRATR 527
Score = 30.2 bits (68), Expect = 6.1
Identities = 26/87 (29%), Positives = 32/87 (36%), Gaps = 11/87 (12%)
Query: 688 EKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKA 747
E PA A +P EP A D S+ KP P A AA PA+AK A
Sbjct: 447 EAPAKSAIEEPAD-ELEPVAEAAETEGKGTDRSARAVKPI---PVI--APAAYPASAKTA 500
Query: 748 ESSSD-----DDSSSEDEKPAVKAPAK 769
E + DD + A K +
Sbjct: 501 EPAGFFGRPPDDPGVRRDGAAEKRATR 527
>gnl|CDD|222651 pfam14286, DHHW, DHHW protein. This family of proteins is found in
bacteria. Proteins in this family are typically between
366 and 404 amino acids in length. There is a conserved
DHHW motif.
Length = 378
Score = 32.4 bits (74), Expect = 1.3
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Query: 717 DDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQA-A 775
DD + + A P + VA + ++SS+ DSS+E V V
Sbjct: 68 DDIPETEGETAPTQPIQTVA-PEESDTVSSEDASSNQDSSAETTVIPVDPDDSVVFDDGK 126
Query: 776 KPGDLSS 782
G++ +
Sbjct: 127 VQGEIQN 133
Score = 30.1 bits (68), Expect = 5.7
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 681 DDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAK 740
DD + + A P + VA + + SS+ DSS+E V V K
Sbjct: 68 DDIPETEGETAPTQPIQTVAPEESDTVSSEDASSN-QDSSAETTVIPVDPDDSVVFDDGK 126
>gnl|CDD|100109 cd05831, Ribosomal_P1, Ribosomal protein P1. This subfamily
represents the eukaryotic large ribosomal protein P1.
Eukaryotic P1 and P2 are functionally equivalent to the
bacterial protein L7/L12, but are not homologous to
L7/L12. P1 is located in the L12 stalk, with proteins
P2, P0, L11, and 28S rRNA. P1 and P2 are the only
proteins in the ribosome to occur as multimers, always
appearing as sets of heterodimers. Recent data indicate
that eukaryotes have four copies (two heterodimers),
while most archaeal species contain six copies of L12p
(three homodimers) and bacteria may have four or six
copies (two or three homodimers), depending on the
species. Experiments using S. cerevisiae P1 and P2
indicate that P1 proteins are positioned more internally
with limited reactivity in the C-terminal domains, while
P2 proteins seem to be more externally located and are
more likely to interact with other cellular components.
In lower eukaryotes, P1 and P2 are further subdivided
into P1A, P1B, P2A, and P2B, which form P1A/P2B and
P1B/P2A heterodimers. Some plant species have a third
P-protein, called P3, which is not homologous to P1 and
P2. In humans, P1 and P2 are strongly autoimmunogenic.
They play a significant role in the etiology and
pathogenesis of systemic lupus erythema (SLE). In
addition, the ribosome-inactivating protein
trichosanthin (TCS) interacts with human P0, P1, and P2,
with its primary binding site located in the C-terminal
region of P2. TCS inactivates the ribosome by
depurinating a specific adenine in the sarcin-ricin loop
of 28S rRNA.
Length = 103
Score = 30.4 bits (69), Expect = 1.3
Identities = 13/31 (41%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 690 PAVKAPAKPVAHAAEPAAAKKAES--SSDDD 718
PA A A A A KK E SDDD
Sbjct: 67 PAAAAAAAAAAAAEAKKEEKKEEEEEESDDD 97
Score = 29.2 bits (66), Expect = 3.1
Identities = 12/31 (38%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 726 PAVKTPAKPVAQAAKPAAAKKAES--SSDDD 754
PA A A A KK E SDDD
Sbjct: 67 PAAAAAAAAAAAAEAKKEEKKEEEEEESDDD 97
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 32.1 bits (73), Expect = 1.3
Identities = 24/131 (18%), Positives = 47/131 (35%), Gaps = 24/131 (18%)
Query: 664 AQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSED 723
+ KK++ +SS +D++ ++ K+E S++DDS E+
Sbjct: 147 KKGKAKKKTKKSKKKEAKESSDKDDEEESES-----------EDESKSEESAEDDSDDEE 195
Query: 724 EKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQ 783
E+ + ++ +Q E ++ S + + D S
Sbjct: 196 EEDSD---SEDYSQYDGMLVDSSDEEEGEEAPSINYNE----------DTSESESDESDS 242
Query: 784 EASEKRSPNDF 794
E SE RS +D
Sbjct: 243 EISESRSVSDS 253
Score = 31.7 bits (72), Expect = 2.2
Identities = 20/134 (14%), Positives = 42/134 (31%), Gaps = 12/134 (8%)
Query: 659 EIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDD 718
E S+ ++ + S ++S+ +D + + +E + D
Sbjct: 162 EAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSD-----SEDYSQYDGMLVDSSD 216
Query: 719 SSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAK-- 776
+E P++ ++ + S S S SE+ P K P + +
Sbjct: 217 EEEGEEAPSI--NYNEDTSESESDESDSEISESRSVSDSEESSPPSKKPKEKKTSSTFLP 274
Query: 777 ---PGDLSSQEASE 787
G S E +
Sbjct: 275 SLMGGYFSGSEDED 288
>gnl|CDD|234336 TIGR03734, PRTRC_parB, PRTRC system ParB family protein. A novel
genetic system characterized by six major proteins,
included a ParB homolog and a ThiF homolog, is
designated PRTRC, or ParB-Related,ThiF-Related Cassette.
It is often found on plasmids. This protein family the
member related to ParB, and is designated PRTRC system
ParB family protein.
Length = 554
Score = 32.4 bits (74), Expect = 1.4
Identities = 26/101 (25%), Positives = 34/101 (33%), Gaps = 25/101 (24%)
Query: 699 VAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSE 758
V + + AA KKAE A + PA P A PA K +
Sbjct: 312 VCNTTKVAARKKAE---------RAAAAAAQKPAAPAAGPGTPAKEKSPAET-------- 354
Query: 759 DEKPAVKAPAKPVAQAAKPGDLSSQEASEKRSPNDFALWKK 799
A AKP A+ A P S + R +W+K
Sbjct: 355 ----ATSGAAKPAAKKAVPSSQPSNRVKDYRE----KVWRK 387
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation factor
3 (eIF3). In yeast it is called Hcr1. The Saccharomyces
cerevisiae protein eIF3j (HCR1) has been shown to be
required for processing of 20S pre-rRNA and binds to 18S
rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 31.6 bits (72), Expect = 1.4
Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
Query: 678 SSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQ 737
S D++ E E+ K AK A A A ++ E + + E++ P +
Sbjct: 36 SWDEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKRE---KEEKGLRELEEDTPEDE 92
Query: 738 AAKPAAAKKAESSSD 752
A+ +K + SD
Sbjct: 93 LAEKLRLRKLQEESD 107
Score = 31.6 bits (72), Expect = 1.6
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 57 KETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKKIPPSE 102
K++ +E++ ++ E K A K + K L A E KE K+ +
Sbjct: 34 KDSWDEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEK 79
Score = 30.0 bits (68), Expect = 4.5
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Query: 677 SSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVA 736
+ DD+ E E PA A A + + S D++ E E+ K AK A
Sbjct: 2 ADWDDE---EFEPPAPPAKAVVKDKWDDEDEDDDVKDSWDEEEDEEKEEEKAKVAAKAKA 58
Query: 737 QAAKPAAAKKAE 748
+ A A ++ E
Sbjct: 59 KKALKAKIEEKE 70
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 32.3 bits (73), Expect = 1.5
Identities = 40/192 (20%), Positives = 73/192 (38%), Gaps = 23/192 (11%)
Query: 606 LSDWLDSLHGSSITDNSIFATLPKHWEA--EFHKDMADLNVLPPTVLTRVSEYIPEIVAS 663
LS + + SI+D + L + E F +DM DL + ++ + E +
Sbjct: 165 LSGNVSDVDTDSISDKKVVEALREDNEKGVNFRRDMTDLKERESQEDAKRAQQLKEELDK 224
Query: 664 AQTPKPAAAKKAESSSDD-----DSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDD 718
Q A +KA+ + D+ D + ++ A P KP ++ + AE+ +
Sbjct: 225 KQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNLP-KPADTSSPKEDKQVAENQKREI 283
Query: 719 SSSEDE-KPAVKTPAKPVAQAA-----------KPAAAKKAESSSDDDSSSED---EKPA 763
++ E K + K A K A K+ E+ + +ED KP
Sbjct: 284 EKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELEAQKKREPVAEDLQKTKPQ 343
Query: 764 VKAPAKPVAQAA 775
V+A + + A
Sbjct: 344 VEAQPTSLNEDA 355
>gnl|CDD|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.
Length = 859
Score = 32.5 bits (75), Expect = 1.5
Identities = 20/94 (21%), Positives = 24/94 (25%), Gaps = 22/94 (23%)
Query: 618 ITDNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAAKKAES 677
+ ATLPK E PT + E + E + A AK
Sbjct: 787 VKHGKANATLPKGRETR-----------APT-VEEALELLAEKPEKLRYLADAPAKDPAG 834
Query: 678 SSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKA 711
K AVK K KA
Sbjct: 835 K----------KAAVKFSRKTKQQYVASEKDGKA 858
>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional.
Length = 186
Score = 31.3 bits (71), Expect = 1.6
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 56 DKETLAKEKEAKRLAEAEKAAEKER------KKAELAAAQEAKEA 94
DK + AK+ K EAEK + R KKA AAA A+EA
Sbjct: 119 DKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAVAAEEA 163
Score = 30.1 bits (68), Expect = 3.2
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 11/84 (13%)
Query: 686 EDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAK 745
E+++ V A ++ A + A E+ EK + A+ VA+ AA
Sbjct: 108 EEKEGKVNAKKDKLSKAKKAAKKAALEA----------EKKVNEARAEAVAEKKAAEAAA 157
Query: 746 KAESSSDDDSSSE-DEKPAVKAPA 768
A + E +E PA +APA
Sbjct: 158 VAAEEAAAAEEEEAEEAPAEEAPA 181
Score = 29.4 bits (66), Expect = 5.7
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 51 AVKLVDKETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEA 94
++ E E A+ +AE + A E AAA E +EA
Sbjct: 129 KKAALEAEKKVNEARAEAVAEKKAAEAAAVAAEE-AAAAEEEEA 171
>gnl|CDD|236792 PRK10905, PRK10905, cell division protein DamX; Validated.
Length = 328
Score = 31.8 bits (72), Expect = 1.6
Identities = 28/119 (23%), Positives = 40/119 (33%), Gaps = 16/119 (13%)
Query: 689 KPAVKAP-----AKPVAHAAEPAAAKKAESSSDDDSSSEDEKP--AVKTPAKPVAQAAK- 740
+PA AP A + A + + E +KP KT KPVAQ K
Sbjct: 126 EPATVAPVRNGNASRQTAKTQTAERPATTRPARKQAVIEPKKPQATAKTEPKPVAQTPKR 185
Query: 741 --------PAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRSP 791
A A S+ ++ +PA+ A A G + S K +P
Sbjct: 186 TEPAAPVASTKAPAATSTPAPKETATTAPVQTASPAQTTATPAAGGKTAGNVGSLKSAP 244
Score = 31.4 bits (71), Expect = 1.9
Identities = 19/102 (18%), Positives = 30/102 (29%), Gaps = 5/102 (4%)
Query: 690 PAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAES 749
P A PV + K +++ ++ K AV P KP A A
Sbjct: 124 PTEPATVAPVRNGNASRQTAKTQTAERPATTRPARKQAVIEPKKPQATAKTEPKPVAQTP 183
Query: 750 SSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRSP 791
+E P A P + ++ + SP
Sbjct: 184 -----KRTEPAAPVASTKAPAATSTPAPKETATTAPVQTASP 220
>gnl|CDD|113514 pfam04747, DUF612, Protein of unknown function, DUF612. This
family includes several uncharacterized proteins from
Caenorhabditis elegans.
Length = 517
Score = 32.0 bits (71), Expect = 1.8
Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 18/107 (16%)
Query: 8 MRNQLSKQQPNL---------QFQH--LNQLLPRRLNPALKLPFLPLPSIGRPSAVKLVD 56
+R QL+ ++ NL QF+ L +LP +N K F L +P V+ V
Sbjct: 12 IRQQLTNRRKNLGRVAKSQRNQFRQWLLTAVLPNSINDQRKEAFASLELTEQPQQVEKVK 71
Query: 57 K-------ETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQK 96
K + +AK+ EA++ A+KAAEKE ++AE A + A + ++
Sbjct: 72 KSEKKKAQKQIAKDHEAEQKVNAKKAAEKEARRAEAEAKKRAAQEEE 118
Score = 30.4 bits (67), Expect = 5.8
Identities = 26/119 (21%), Positives = 47/119 (39%), Gaps = 1/119 (0%)
Query: 658 PEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDD 717
P++V + A +K + S SE+ A + P +PV PA+ + + + D
Sbjct: 241 PKVVTEEPHQQAAPQEKKNKKNKRKSESENVPAASETPVEPVVETTPPASENQ-KKNKKD 299
Query: 718 DSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAK 776
SE EK + ++ KP A + + E + + PA PV + +
Sbjct: 300 KKKSESEKVVEEPVQAEAPKSKKPTADDNMDFLDFVTAKEEPKDEPAETPAAPVEEVVE 358
>gnl|CDD|178806 PRK00030, minC, septum formation inhibitor; Provisional.
Length = 292
Score = 31.6 bits (71), Expect = 1.8
Identities = 17/86 (19%), Positives = 28/86 (32%), Gaps = 4/86 (4%)
Query: 666 TPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEK 725
TP A + +++ +D ++ P P AA+ D +
Sbjct: 102 TPVARAPQVIDTAPPNDVAT----PVPSVPEATAEAAAKAGPQDDEADGEQADEAPAHNP 157
Query: 726 PAVKTPAKPVAQAAKPAAAKKAESSS 751
+V T A A A +SSS
Sbjct: 158 ESVPTRAARETTEANRPTATPPQSSS 183
Score = 31.2 bits (70), Expect = 2.3
Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 9/119 (7%)
Query: 695 PAKPVAHAAEPAAAKKA-----ESSSDDDSSSEDEKPA----VKTPAKPVAQAAKPAAAK 745
P VA A A+ A E S+ + + A V TP V +A AAAK
Sbjct: 77 PIGVVAEGANLQGARDAGLVPVELSTPVARAPQVIDTAPPNDVATPVPSVPEATAEAAAK 136
Query: 746 KAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRSPNDFALWKKSKAGE 804
+ D DE PA + P A + + + A+ +S + + K ++G+
Sbjct: 137 AGPQDDEADGEQADEAPAHNPESVPTRAARETTEANRPTATPPQSSSALVITKPLRSGQ 195
>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase;
Provisional.
Length = 330
Score = 31.7 bits (73), Expect = 1.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 57 KETLAKEKEAKRLAEAEKAAEKERKKAELAAAQ 89
K L +KE K +A+K EK+ KA A ++
Sbjct: 57 KAALLDKKELKAWHKAQKKKEKQEAKAAKAKSK 89
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 31.7 bits (72), Expect = 1.9
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 57 KETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKK 97
K+ +EA+ A+ EK ++E +K + A E KE ++K
Sbjct: 389 KDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQK 429
>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase
component of pyruvate dehydrogenase complex.
Length = 539
Score = 31.7 bits (72), Expect = 2.0
Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 6/72 (8%)
Query: 680 DDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQA- 738
+D +D KP+ A P K+ E + +S E A K A P +
Sbjct: 192 EDIGKFKDYKPSSSAAPAAPKAKPSPPPPKEEEV---EKPASSPEPKASKPSAPPSSGDR 248
Query: 739 --AKPAAAKKAE 748
A P A K AE
Sbjct: 249 IFASPLARKLAE 260
>gnl|CDD|239497 cd03403, Band_7_stomatin_like, Band_7_stomatin_like: A subgroup of
the band 7 domain of flotillin (reggie) like proteins
similar to stomatin and podicin (two lipid
raft-associated integral membrane proteins). Individual
proteins of this band 7 domain family may cluster to
form membrane microdomains which may in turn recruit
multiprotein complexes. Stomatin is widely expressed
and, highly expressed in red blood cells. It localizes
predominantly to the plasma membrane and to
intracellular vesicles of the endocytic pathway, where
it is present in higher order homo-oligomeric complexes
(of between 9 and 12 monomers). Stomatin interacts with
and regulates members of the degenerin/epithelia Na+
channel family in mechanosensory cells of Caenorhabditis
elegans and vertebrate neurons and, is implicated in
trafficking of Glut1 glucose transporters. Prohibitin is
a mitochondrial inner-membrane protein hypothesized to
act as a chaperone for the stabilization of
mitochondrial proteins. Podicin localizes to the plasma
membrane of podocyte foot processes and, is found in
higher order oligomers. Podocin plays a role in
regulating glomerular permeability. Mutations in the
podicin gene give rise to autosomal recessive steroid
resistant nephritic syndrome. This group also contains
proteins similar to three Caenorhabditis elegans
proteins: UNC-1, UNC-24 and, MEC-2. Mutations in the
unc-1 and unc-24 genes result in abnormal motion and
altered patterns of sensitivity to volatile anesthetics.
MEC-2 and UNC-24 proteins interact with MEC-4 which is
part of the degenerin channel complex required for
response to gentle body touch.
Length = 215
Score = 31.0 bits (71), Expect = 2.0
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Query: 57 KETLAKEKEAKR-------LAEAEKAAEKERKKAELAAAQEAKEAQKK 97
+E +AK+ EA+R AE E+ A +A AA Q +
Sbjct: 147 QEAMAKQAEAEREKRAKIIEAEGERQAAILLAEAAKQAAINPAALQLR 194
>gnl|CDD|99903 cd06080, MUM1_like, Mutated melanoma-associated antigen 1 (MUM-1)
is a melanoma-associated antigen (MAA). MUM-1 belongs
to the mutated or aberrantly expressed type of MAAs,
along with antigens such as CDK4, beta-catenin,
gp100-in4, p15, and N-acetylglucosaminyltransferase V.
It is highly expressed in several types of human
cancers. The PWWP domain, named for a conserved
Pro-Trp-Trp-Pro motif, is a small domain consisting of
100-150 amino acids. The PWWP domain is found in
numerous proteins that are involved in cell division,
growth and differentiation. Most PWWP-domain proteins
seem to be nuclear, often DNA-binding, proteins that
function as transcription factors regulating a variety
of developmental processes.
Length = 80
Score = 29.3 bits (66), Expect = 2.0
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Query: 187 GEVRGYPPWPARIEGLADETPNRLKYHIFFYGTRET-GICRQDELFPYTEFKDKYGKV 243
+++GYP WPA I + + K + F G + + + D K
Sbjct: 9 AKIQGYPWWPAVI---KSISRKKQKARVNFIGDNMQSEKKGIRVVKRWLKHFDCTEKQ 63
>gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain.
Transcription of the anti-viral guanylate-binding
protein (GBP) is induced by interferon-gamma during
macrophage induction. This family contains GBP1 and
GPB2, both GTPases capable of binding GTP, GDP and GMP.
Length = 297
Score = 31.5 bits (72), Expect = 2.1
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 67 KRLAEAEKAAEKERKKAELAAAQEAKEAQKKIPPSEMFKMETDKYSQ 113
+ L EKA E ER KAE A A++ +K+ +M ME + S
Sbjct: 197 QALTAKEKAIEAERAKAEAAEAEQELLREKQKEEEQM--MEAQERSY 241
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase
inhibitor.
Length = 670
Score = 31.6 bits (71), Expect = 2.1
Identities = 23/107 (21%), Positives = 37/107 (34%), Gaps = 7/107 (6%)
Query: 656 YIPEIVA----SAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKA 711
YIP + A S + +A + ++ DS S P+ PA H P A
Sbjct: 557 YIPGLFAGNPGSTNSTPTGSAASSNTTFSSDSPSTVVAPSTSPPA---GHLGSPPATPSK 613
Query: 712 ESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSE 758
S + TP+ P + + + SS +S+E
Sbjct: 614 IVSPSTSPPASHLGSPSTTPSSPESSIKVASTETASPESSIKVASTE 660
>gnl|CDD|235132 PRK03577, PRK03577, acid shock protein precursor; Provisional.
Length = 102
Score = 29.6 bits (66), Expect = 2.2
Identities = 20/84 (23%), Positives = 30/84 (35%), Gaps = 7/84 (8%)
Query: 699 VAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAA-------KPAAAKKAESSS 751
A AAE A +++ + ++ K K Q A K +KA
Sbjct: 18 AAFAAETATTAAPAATTTTAAPAKTTHHHKKQHKKAPEQKAQAAKKHHKNKKEQKAPEQK 77
Query: 752 DDDSSSEDEKPAVKAPAKPVAQAA 775
+ +K + K AKP AQ A
Sbjct: 78 AQAAKKHAKKHSHKTAAKPAAQPA 101
>gnl|CDD|221144 pfam11595, DUF3245, Protein of unknown function (DUF3245). This is
a family of proteins conserved in fungi. The function is
not known, and there is no S. cerevisiae member.
Length = 145
Score = 30.3 bits (68), Expect = 2.2
Identities = 26/118 (22%), Positives = 41/118 (34%), Gaps = 17/118 (14%)
Query: 660 IVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAK-----PVAHAAEPAAAKKAESS 714
+VAS P A+ + +D++ E+++ P P+ A + + E
Sbjct: 12 LVASWLPPMTASEQSNPKKTDEELQKEEDEIFTAVPETLGLGAPLPTQAADGSWNRTELD 71
Query: 715 SDDDS------------SSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDE 760
S+D +E EK + A AK A DDD EDE
Sbjct: 72 SNDKLRRQLLGKNYKKVMAEKEKAEGGPVKRKAAVVAKEAKQSSKGVGDDDDDDDEDE 129
>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein]
synthetase/2-acylglycerophosphoethanolamine
acyltransferase; Validated.
Length = 718
Score = 31.6 bits (72), Expect = 2.3
Identities = 19/56 (33%), Positives = 26/56 (46%)
Query: 21 FQHLNQLLPRRLNPALKLPFLPLPSIGRPSAVKLVDKETLAKEKEAKRLAEAEKAA 76
F L L+ RRL P + L LP + P A + D+ LA E + + EA A
Sbjct: 145 FSRLKGLVKRRLFPQITLHILPPTQLPMPDAPRARDRRKLAGEMLHQIMMEARMAV 200
>gnl|CDD|184724 PRK14520, rpsP, 30S ribosomal protein S16; Provisional.
Length = 155
Score = 30.4 bits (69), Expect = 2.3
Identities = 14/57 (24%), Positives = 22/57 (38%)
Query: 694 APAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESS 750
A KP AA +A+ ++++ +K A A A A AA A +
Sbjct: 96 AEPKPSKLELFNAALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAE 152
Score = 30.0 bits (68), Expect = 3.2
Identities = 10/57 (17%), Positives = 17/57 (29%)
Query: 688 EKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAA 744
KP+ A+ +A + +++E PA A AA
Sbjct: 98 PKPSKLELFNAALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEE 154
Score = 29.7 bits (67), Expect = 4.1
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 48 RPSAVKLVDKETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKKIPPSE 102
+PS ++L + A EA AE K++K A AAA EA + +
Sbjct: 99 KPSKLELFN----AALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAA 149
Score = 28.5 bits (64), Expect = 9.1
Identities = 11/47 (23%), Positives = 18/47 (38%)
Query: 50 SAVKLVDKETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQK 96
+A+ D A+ K+ A +AA E AA A ++
Sbjct: 108 AALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEE 154
>gnl|CDD|148820 pfam07432, Hc1, Histone H1-like protein Hc1. This family consists
of several bacterial histone H1-like Hc1 proteins. In
Chlamydia, Hc1 is expressed in the late stages of the
life cycle, concomitant with the reorganisation of
chlamydial reticulate bodies into elementary bodies.
This suggests that Hc1 protein plays a role in the
condensation of chromatin during intracellular
differentiation.
Length = 123
Score = 30.1 bits (67), Expect = 2.3
Identities = 31/97 (31%), Positives = 40/97 (41%), Gaps = 12/97 (12%)
Query: 663 SAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHA-AEPAAAKKAESSSDDDSSS 721
S + K A + ES + S +KPA KAP A A A AKKA +
Sbjct: 38 SIKLEKIAKLYRKESIKAEKSGLMKKKPAKKAPKAAKAPKKAAKAPAKKAAA-------- 89
Query: 722 EDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSE 758
PA K A A K AAKK + S S+++
Sbjct: 90 ---APAKKAKAVKAKPATKKTAAKKVKKMSKKRSTAK 123
>gnl|CDD|219355 pfam07267, Nucleo_P87, Nucleopolyhedrovirus capsid protein P87.
This family consists of several Nucleopolyhedrovirus
capsid protein P87 sequences. P87 is expressed late in
infection and concentrated in infected cell nuclei.
Length = 606
Score = 31.4 bits (71), Expect = 2.5
Identities = 52/328 (15%), Positives = 106/328 (32%), Gaps = 43/328 (13%)
Query: 438 TFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQTSKILKDIGE 497
D ++ +L +Y Y + T IDD + RA Y EI+ +KI
Sbjct: 96 LLDDIQNLLQQYETYVNQDGSDNTVIDD-FLNRAETAY--------IEIRKNKIKP---- 142
Query: 498 VMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQPEGTINNIKNVTFQKLLTAVRD 557
M E+ + + + ++ V Q+ S + + N + ++T +++
Sbjct: 143 FMKDTEAPARTQAEAETMSAEPT----VATPLQERSVESADDVVNRAD---PNIITRIKN 195
Query: 558 PFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLDSLHGSS 617
+ + ++ T E +F + ++++L+ + + S
Sbjct: 196 AEPKTIATELVQESNESEPVITN----EQDFDR--LNIDQLVDYINKNNDGQFNFDAHDS 249
Query: 618 ITDNSIFATL---PKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAAKK 674
+ D FA K+ A+ T R+S + E + S QTP A
Sbjct: 250 VDDVRNFAKTVWRQKNTPAQTPMPERSWQTPAQTPARRISTPMTEEIKSWQTPLQTPAMY 309
Query: 675 AESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKP 734
+AP + E ++ S SS D
Sbjct: 310 --------------SSDYQAPKPEPIYTWEELLRERFPSDLFAISSLPDSDSEASDSGPT 355
Query: 735 VAQAAKPAAAKKAESSSDDDSSSEDEKP 762
+ + SS +D+ S++++
Sbjct: 356 RKRKRRRVPPLPEYSSDEDEDDSDEDEV 383
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 31.1 bits (71), Expect = 2.5
Identities = 11/46 (23%), Positives = 26/46 (56%)
Query: 53 KLVDKETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKKI 98
+ +++ L +E ++ EK EK++++ E A+ + E Q+K+
Sbjct: 266 EEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKL 311
Score = 29.9 bits (68), Expect = 6.9
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 48 RPSAVKLVDKETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKKIPPSEMFKME 107
P ++ VDK +E++ + AE E+ E+ ++K E +E + K+ P E K+E
Sbjct: 254 SPEVLRKVDKTREEEEEKILKAAEEERQ-EEAQEKKEEKKKEEREAKLAKLSPEEQRKLE 312
>gnl|CDD|224668 COG1754, COG1754, Uncharacterized C-terminal domain of
topoisomerase IA [General function prediction only].
Length = 298
Score = 31.2 bits (71), Expect = 2.6
Identities = 27/97 (27%), Positives = 34/97 (35%), Gaps = 21/97 (21%)
Query: 615 GSSITDNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAAKK 674
G + D ATLPK KD A + L E + E A K A K
Sbjct: 222 GPYVKDGKTNATLPKG------KDPASIT------LEEALELLAERRAKGGPGKKPAKKA 269
Query: 675 AESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKA 711
+ + + +K A K AK AAKKA
Sbjct: 270 TAAKA---KKTTAKKAAAKKAAKT------KKAAKKA 297
>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 31.5 bits (71), Expect = 2.7
Identities = 24/99 (24%), Positives = 33/99 (33%), Gaps = 16/99 (16%)
Query: 702 AAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEK 761
A P KKA + D D P PAKP A A+P S + E +
Sbjct: 385 AGSPDVKKKAP---EPDLPQPDRHPG---PAKPEAPGARP----AELPSPASAPTPEQQP 434
Query: 762 PAVKAPAKPVAQAAKPGDLSSQEASEKRSPN-DFALWKK 799
P ++ P + A S+ P D W+
Sbjct: 435 PVARSAPLPPSPQA-----SAPRNVASGKPGVDLGSWQG 468
Score = 30.3 bits (68), Expect = 6.2
Identities = 25/116 (21%), Positives = 37/116 (31%), Gaps = 16/116 (13%)
Query: 661 VASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSS 720
VA + P KKA + D D P PAKP A A P S +
Sbjct: 380 VAPSPAGSPDVKKKAP---EPDLPQPDRHPG---PAKPEAPGARP----AELPSPASAPT 429
Query: 721 SEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDE------KPAVKAPAKP 770
E + P ++ P + A + D S + + + K P +
Sbjct: 430 PEQQPPVARSAPLPPSPQASAPRNVASGKPGVDLGSWQGKFMNFTRNGSRKQPVQA 485
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 31.4 bits (71), Expect = 2.7
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 61 AKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKKI 98
A+ E K+ AEK K RKK AQ+ + A+++I
Sbjct: 327 AENAEIKKTRTAEKNEAKARKKEI---AQKRRAAEREI 361
Score = 30.6 bits (69), Expect = 3.8
Identities = 19/88 (21%), Positives = 30/88 (34%)
Query: 51 AVKLVDKETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKKIPPSEMFKMETDK 110
K KE K + A+R E E+ A A + A +A+KK +T
Sbjct: 342 EAKARKKEIAQKRRAAEREINREARQERAAAMARARARRAAVKAKKKGLIDASPNEDTPS 401
Query: 111 YSQFDETVLPPTVLTRVSEYIPEIVASY 138
++ + P T +E E
Sbjct: 402 ENEESKGSPPQVEATTTAEPNREPSQED 429
>gnl|CDD|219106 pfam06614, Neuromodulin, Neuromodulin. This family consists of
several neuromodulin (Axonal membrane protein GAP-43)
sequences and is found in conjunction with pfam00612.
GAP-43 is a neuronal calmodulin-binding phosphoprotein
that is concentrated in growth cones and pre-synaptic
terminals.
Length = 174
Score = 30.6 bits (68), Expect = 2.8
Identities = 36/143 (25%), Positives = 57/143 (39%), Gaps = 12/143 (8%)
Query: 663 SAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSE 722
+ PA KK E SS D E P A ++ +AE +A KA S+ + SS
Sbjct: 37 TKDGSSPAEEKKGEGSS--DKPQEQPAPQAPASSEEKQASAETESATKA-STDNSPSSKA 93
Query: 723 DEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSS 782
D P + K A AAA + + ++ A AP A +
Sbjct: 94 DVAPLKEESKKADVPAVTAAAAT---------TPAAEDATAKAAPQPEQETAESSQEEEK 144
Query: 783 QEASEKRSPNDFALWKKSKAGEP 805
++A E+ P++ A +++K E
Sbjct: 145 KDAVEETKPSESAQQEEAKEEEA 167
Score = 29.4 bits (65), Expect = 6.6
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 6/116 (5%)
Query: 681 DDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAK 740
D+ SE+ K AK A E K E + D S +E++K + KP Q A
Sbjct: 4 DEDPSEEAVENKKGEAKTATEATEAETPKTDEPTKDGSSPAEEKK-GEGSSDKPQEQPAP 62
Query: 741 PAAAKKAESSSDDDS-----SSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRSP 791
A A E + ++ +S D P+ KA P+ + +K D+ + A+ +P
Sbjct: 63 QAPASSEEKQASAETESATKASTDNSPSSKADVAPLKEESKKADVPAVTAAAATTP 118
Score = 29.1 bits (64), Expect = 8.9
Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 8/119 (6%)
Query: 670 AAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVK 729
A K + ++E E P +P + PA KK E SSD E+PA +
Sbjct: 11 AVENKKGEAKTATEATEAETPK---TDEPTKDGSSPAEEKKGEGSSDKPQ----EQPAPQ 63
Query: 730 TPAKPVAQAAKPAAAKKAESSSDDDSSSE-DEKPAVKAPAKPVAQAAKPGDLSSQEASE 787
PA + A ++S+D+ SS+ D P + K A ++ A +
Sbjct: 64 APASSEEKQASAETESATKASTDNSPSSKADVAPLKEESKKADVPAVTAAAATTPAAED 122
>gnl|CDD|234548 TIGR04331, o_ant_LIC12162, putative transferase, LIC12162 family.
This protein family shows C-terminal sequence similarity
to various surface carbohydrate biosynthesis enzymes:
spore coat polysaccharide biosynthesis protein SpsB,
UDP-N-acetyl-D-glucosamine 2-epimerase, lipid A
disaccharide synthetase LpxB, etc. It may occur in
O-antigen biosythesis regions.
Length = 585
Score = 31.2 bits (71), Expect = 2.8
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 577 FATLPKHWE--AEFHKDMADLNKLLTAVRDPLSDWLDSLHGS 616
F LP W +F +D L+ L + L+ L+++HG+
Sbjct: 37 FEVLPYPWSDREDFVQDYDYLDALYERLLPSLAKRLNAIHGT 78
>gnl|CDD|217283 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-terminal domain.
This domain has a ferredoxin-like fold.
Length = 247
Score = 30.8 bits (70), Expect = 2.8
Identities = 26/113 (23%), Positives = 41/113 (36%), Gaps = 9/113 (7%)
Query: 56 DKETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAK-EAQKKIPPSEMF----KMETDK 110
D+E + + EA A E A + AE A +E A+K P
Sbjct: 70 DEEVVEERLEAAVEAILEGAGAGDVVVAEDEAERERLWRARKYAMPLRDALGGAGPLVFT 129
Query: 111 YSQFDETVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFD 163
+ +P + L + I E++A Y I G + N +Y +A D
Sbjct: 130 E----DVSVPWSRLPDLVADIKELLAKYGLVICHFGHVGDGNLHLYILFDAKD 178
>gnl|CDD|178538 PLN02952, PLN02952, phosphoinositide phospholipase C.
Length = 599
Score = 31.1 bits (70), Expect = 3.0
Identities = 28/105 (26%), Positives = 41/105 (39%), Gaps = 9/105 (8%)
Query: 646 PPTVLTRV--SEYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAA 703
P ++ R+ S P+ + P K S S +SS E E+ A +
Sbjct: 255 PESLKHRIIISTKPPKEYLESSGPIVIKKKNNVSPSGRNSSEETEE----AQTLE-SMLF 309
Query: 704 EPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAE 748
E A +++S DD+ S E +KPA K A KP K
Sbjct: 310 EQEADSRSDSDQDDNKSGELQKPAYKRLI--TIHAGKPKGTLKDA 352
>gnl|CDD|236172 PRK08173, PRK08173, DNA topoisomerase III; Validated.
Length = 862
Score = 31.2 bits (71), Expect = 3.1
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 664 AQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKA 711
+ PK AAAKK + + ++++ EK A K A AA+ AA+K
Sbjct: 815 PREPKAAAAKKTAAKATAAAATKAEKAAAK-KAPAKKTAAKKTAARKT 861
Score = 30.0 bits (68), Expect = 6.8
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 702 AAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKA 747
+ AAAKK + + ++++ EK A A AAK AA+K
Sbjct: 817 EPKAAAAKKTAAKATAAAATKAEKAA-AKKAPAKKTAAKKTAARKT 861
Score = 30.0 bits (68), Expect = 7.3
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 731 PAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPG 778
P +P A AAK AAK +++ + +K K A A K G
Sbjct: 815 PREPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARKTG 862
>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional.
Length = 213
Score = 30.7 bits (70), Expect = 3.1
Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 13/85 (15%)
Query: 699 VAHAA-------EPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSS 751
V HA A++AE + ++ +++ A + KP +A + +A+
Sbjct: 96 VEHARKQLEEAKAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQ--- 152
Query: 752 DDDSSSEDEKPAVKAPAKPVAQAAK 776
P V QA K
Sbjct: 153 ---KPEPQHTPVSDISELTVGQAVK 174
Score = 29.5 bits (67), Expect = 6.7
Identities = 11/62 (17%), Positives = 29/62 (46%)
Query: 64 KEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKKIPPSEMFKMETDKYSQFDETVLPPTV 123
+EAK +A++A ++ +K+ ++A ++K P K + + + P +
Sbjct: 104 EEAKAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSD 163
Query: 124 LT 125
++
Sbjct: 164 IS 165
>gnl|CDD|221121 pfam11489, DUF3210, Protein of unknown function (DUF3210). This is
a family of proteins conserved in yeasts. The function
is not known. The Schizosaccharomyces pombe member is
SPBC18E5.07 and the Saccharomyces cerevisiae member is
AIM21.
Length = 671
Score = 31.1 bits (70), Expect = 3.2
Identities = 31/125 (24%), Positives = 47/125 (37%), Gaps = 25/125 (20%)
Query: 669 PAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAV 728
P+ KK + +S+ P V KP A PA +K ++ + +SS+ KP V
Sbjct: 517 PSRPKKGKPTSEKRKP-----PPVPKKPKP-QIPARPAKLQKQQAGEEANSSAFKPKPRV 570
Query: 729 KTPAKPVAQ-----------------AAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPV 771
PA+P A P A KK S + S + E+ P+
Sbjct: 571 --PARPGGSKIAALKAGFASDLNGRLALGPQAPKKVLESPKEPSKEKKEEDEDTKEKAPL 628
Query: 772 AQAAK 776
+ A K
Sbjct: 629 SDARK 633
>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional.
Length = 413
Score = 31.1 bits (70), Expect = 3.2
Identities = 21/131 (16%), Positives = 44/131 (33%), Gaps = 4/131 (3%)
Query: 662 ASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSS 721
+ TP P+ + + +S ++ P A P P + + +S +
Sbjct: 100 VGSPTPSPSGSAEELASGLSPENTSGSSPESPASHSP---PPSPPSHPGPHEPAPPESHN 156
Query: 722 EDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLS 781
+ +P + + P + S + DS + + P + +PG+
Sbjct: 157 PSPNQQPSSFLQPSHEDS-PEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQ 215
Query: 782 SQEASEKRSPN 792
S + SPN
Sbjct: 216 SPTPQQAPSPN 226
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 30.1 bits (68), Expect = 3.2
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 713 SSSDDDS--SSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKP 770
SSSDD+ + E+ + P + K+ + +P P+KP
Sbjct: 92 SSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSKP 151
Score = 29.7 bits (67), Expect = 4.4
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 677 SSSDDDS--SSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKP 734
SSSDD+ + E+ + P K+ + +P P+KP
Sbjct: 92 SSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSKP 151
>gnl|CDD|152115 pfam11679, DUF3275, Protein of unknown function (DUF3275). This
family of proteins with unknown function appear to be
restricted to Proteobacteria.
Length = 211
Score = 30.2 bits (68), Expect = 3.5
Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 1/85 (1%)
Query: 701 HAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDE 760
+ + + + + DE PA P A A P+ +S
Sbjct: 80 DGIDKLSRDEPRRTEPQEPDPLDESPASAAPV-ASAPAPAPSPQSPKPASRRASRDMRRI 138
Query: 761 KPAVKAPAKPVAQAAKPGDLSSQEA 785
P + P +AA+ ++A
Sbjct: 139 APFGMNASAPAQEAAQASSDEDEDA 163
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 30.8 bits (70), Expect = 3.6
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 57 KETLAKEKEA--KRLAEAEKAAEKERKKAEL--AAAQEAKEAQKK 97
E L + +A AE AA K R+ A AAA A+ A+ K
Sbjct: 226 LEELRANESRLKNEIASAEAAAAKAREAAAAAEAAAARARAAEAK 270
>gnl|CDD|218099 pfam04465, DUF499, Protein of unknown function (DUF499). Family of
uncharacterized hypothetical prokaryotic proteins.
Length = 1025
Score = 31.0 bits (70), Expect = 3.6
Identities = 31/161 (19%), Positives = 68/161 (42%), Gaps = 25/161 (15%)
Query: 374 VESTNLEELVLPYLTILSEFRDNI-------RTEARLIKSTEILNQCDRLRDEVLPNVGV 426
V LE+L+ + + +R+ + L++ T C+ + DE+ G
Sbjct: 505 VSEDELEKLIFKFGSGERTYRNTVVVVYPAVGGMDSLLEITARYMACEEVMDEIKEAYGK 564
Query: 427 RLEDIEGKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEK-HVQENE 485
+D+ +I + ++ + + + D++++I++ R+ K V+E +
Sbjct: 565 YGKDVV-------NIQKSMVEDIRDR------ALEDLENQIVRSFRKVAYPVKDGVEEVD 611
Query: 486 IQTSKILKDIGE-VMGAFESKMKLVTDPDKLTMMKNILSNV 525
S K + E V A S+ K+V + D + +IL +V
Sbjct: 612 APASS--KSVVENVYSALVSRGKIVEEFD-FEWLIDILKDV 649
>gnl|CDD|237205 PRK12792, flhA, flagellar biosynthesis protein FlhA; Reviewed.
Length = 694
Score = 30.9 bits (70), Expect = 3.6
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
Query: 38 LPFLPLPSIGRPSAVKLVDKETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQK 96
LPFLP +G V T+ + R A A + K+ E +A EAK++ K
Sbjct: 304 LPFLPFALLG---GVMAFVAYTIPR-----RRAARAAAEAAKVKREEESAQAEAKDSVK 354
>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional.
Length = 943
Score = 31.2 bits (70), Expect = 3.6
Identities = 29/116 (25%), Positives = 42/116 (36%), Gaps = 15/116 (12%)
Query: 668 KPAAAKKAESSSDDDSSSEDEKPAVK---------APAKPVAHAAEPAAAKKAESSSDDD 718
K + E S + D E KP PAK + P +KK E D
Sbjct: 527 KEGEEGEHEDSKESDEPKEGGKPGETKEGEVGKKPGPAKEHKPSKIPTLSKKPEFPKDPK 586
Query: 719 SSSEDEKPAVKTPAKPVA--QAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVA 772
+ E+P K P +P + + +P + K E S E P K+P +P
Sbjct: 587 HPKDPEEP--KKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPESP--KSPKRPPP 638
Score = 30.8 bits (69), Expect = 4.0
Identities = 32/124 (25%), Positives = 44/124 (35%), Gaps = 10/124 (8%)
Query: 673 KKAESSSDDDSSSEDEKPAVKAPAK----PVAHAAEPAAAKKAESSSDDDSSSEDEKPAV 728
KK ++DS DE P + P P A + + E S + D E KP
Sbjct: 494 KKLAPIEEEDSDKHDEPP--EGPEASGLPPKAPGDKEGEEGEHEDSKESDEPKEGGKPG- 550
Query: 729 KTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPA-VKAPAKPVAQAAKPGDLSSQEASE 787
K KP AK+ + S S + E P K P P S+Q +
Sbjct: 551 --ETKEGEVGKKPGPAKEHKPSKIPTLSKKPEFPKDPKHPKDPEEPKKPKRPRSAQRPTR 608
Query: 788 KRSP 791
+SP
Sbjct: 609 PKSP 612
>gnl|CDD|234055 TIGR02907, spore_VI_D, stage VI sporulation protein D. SpoVID, the
stage VI sporulation protein D, is restricted to
endospore-forming members of the bacteria, all of which
are found among the Firmicutes. It is widely distributed
but not quite universal in this group. Between
well-conserved N-terminal and C-terminal domains is a
poorly conserved, low-complexity region of variable
length, rich enough in glutamic acid to cause spurious
BLAST search results unless a filter is used. The seed
alignment for this model was trimmed, in effect, by
choosing member sequences in which these regions are
relatively short. SpoVID is involved in spore coat
assembly by the mother cell compartment late in the
process of sporulation [Cellular processes, Sporulation
and germination].
Length = 338
Score = 30.6 bits (69), Expect = 3.7
Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 12/96 (12%)
Query: 676 ESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSE------------D 723
E + ++ + E+PA P + A+EP + +S ++ + E +
Sbjct: 178 EPKVEHEAHEQHEQPADDDPDEWKISASEPFQLESEVEASPEEENYEEYEDETELEVEDE 237
Query: 724 EKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSED 759
EK + P + A AKKA ++ +
Sbjct: 238 EKALDEQTEDPQQEDALAGDAKKALEEEEEKGERPE 273
>gnl|CDD|226532 COG4046, COG4046, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 368
Score = 30.9 bits (70), Expect = 3.8
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 14/71 (19%)
Query: 365 IGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIK--STEILNQCDRLRDEVLP 422
+G +G GVE +E + + Y I +A +IK E + Q + +++
Sbjct: 285 VGVAMGDPGVEKIFIERIAVKY---------GIPLDAVIIKMSPEEAITQ---MPEDIYG 332
Query: 423 NVGVRLEDIEG 433
V LE ++
Sbjct: 333 AVEKALERVKD 343
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 585
Score = 30.9 bits (70), Expect = 3.8
Identities = 25/105 (23%), Positives = 36/105 (34%), Gaps = 10/105 (9%)
Query: 689 KPAVKAPAKPVAHAAEPAAAKKAESS--SDDDSSSEDEKPAVKTPAKPVAQAAKPAAA-- 744
PAKP A A P A S+ +++ K V+ A P +P A
Sbjct: 362 PVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPV 421
Query: 745 ---KKAESSSDDDSSSEDEKPAVKAPAKPVAQ---AAKPGDLSSQ 783
++ + DEKP PA P + GD+ Q
Sbjct: 422 PHTPESAPKLTRAAIPVDEKPKYTPPAPPKEEEKALIADGDVLEQ 466
Score = 30.2 bits (68), Expect = 6.0
Identities = 19/113 (16%), Positives = 32/113 (28%), Gaps = 10/113 (8%)
Query: 644 VLPPTVLTRVSEYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAA 703
++P TP P+ KA +++ + K V+ A P
Sbjct: 360 LVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAA-----NIPPKEPVRETATPPPVPP 414
Query: 704 EPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSS 756
P A + + P + P PA K+ E + D
Sbjct: 415 RPVAPPVPHTPESAPKLTRAAIPVDEKPK-----YTPPAPPKEEEKALIADGD 462
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 30.7 bits (70), Expect = 4.4
Identities = 12/52 (23%), Positives = 26/52 (50%)
Query: 52 VKLVDKETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKKIPPSEM 103
++ + A +K K + +AEK E+E+K+ + A K+ +++ E
Sbjct: 399 IEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEK 450
>gnl|CDD|221158 pfam11653, VirionAssem_T7, Bacteriophage T7 virion assembly
protein. This family of proteins represents the gene
product 7.3 from T7 bacteriophage. The protein is
localised to the tail and is thought to be important in
virion assembly. Particles assembled in the absence of
the protein fail to adsorb to cells.
Length = 95
Score = 28.4 bits (63), Expect = 4.4
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 685 SEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPA 742
+D V+AP P A AA+ K + ++D+S +E K + K A+ +
Sbjct: 34 GDDAPKEVEAPV-PQA-AAQIVEVPKDKVETEDESQTESGKKKARAGGKKSLSVARSS 89
Score = 28.1 bits (62), Expect = 7.0
Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 5/90 (5%)
Query: 689 KPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAE 748
K AVK K V+ + A ++ +D V+ P P A A K
Sbjct: 6 KKAVKKVVKSVSKVTKGAG----VAAGGLLGGGDDAPKEVEAPV-PQAAAQIVEVPKDKV 60
Query: 749 SSSDDDSSSEDEKPAVKAPAKPVAQAAKPG 778
+ D+ + +K A K ++ A G
Sbjct: 61 ETEDESQTESGKKKARAGGKKSLSVARSSG 90
>gnl|CDD|226400 COG3883, COG3883, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 265
Score = 30.1 bits (68), Expect = 4.5
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 56 DKETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQK 96
+K L ++K A AE A ++ KA AAQE Q
Sbjct: 212 EKAALEEQKALAEAAAAEAAKQEAAAKA---AAQEQAALQA 249
>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional.
Length = 475
Score = 30.7 bits (69), Expect = 4.6
Identities = 13/63 (20%), Positives = 23/63 (36%)
Query: 736 AQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRSPNDFA 795
+A +PA A + +++ A P A A + + +R P +
Sbjct: 12 GEAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPAS 71
Query: 796 LWK 798
LWK
Sbjct: 72 LWK 74
>gnl|CDD|151958 pfam11521, TFIIE-A_C-term, C-terminal general transcription factor
TFIIE alpha. TFIIE is compiled of two subunits, alpha
and beta. This family of proteins are the C terminal
domain of the alpha subunit of the protein which is the
largest subunit and contains several functional domains
which are important for basal transcription and cell
growth. The C terminal end of the protein binds directly
to the amino-terminal PH domain of p62/Tfb1 (of IIH)
which is involved in the recruitment of the general
transcription factor IIH to the transcription
preinitiation complex. P53 competes for the same binding
site as TFIIE alpha which shows their structural
similarity. Like p53, TFIIE alpha 336-439 can activate
transcription in vivo.
Length = 86
Score = 28.2 bits (63), Expect = 4.7
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 8/57 (14%)
Query: 678 SSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKP 734
S D S S+D+ P+ + PA + E DD+ +++P V +P
Sbjct: 1 SESDTSESDDDSPSPEPPAGQSVD--------EEEDDEDDEFEEVEDEPTVMVAGRP 49
>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23. All proteins
in this family for which functions are known are
components of a multiprotein complex used for targeting
nucleotide excision repair to specific parts of the
genome. In humans, Rad23 complexes with the XPC protein.
This family is based on the phylogenomic analysis of JA
Eisen (1999, Ph.D. Thesis, Stanford University) [DNA
metabolism, DNA replication, recombination, and repair].
Length = 378
Score = 30.2 bits (68), Expect = 4.9
Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 3/71 (4%)
Query: 709 KKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPA 768
K + ++ TP+ P + A+ +AA +S+ ++ S +E AP
Sbjct: 77 PKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAP---ASAVEEKSPSEESATATAPE 133
Query: 769 KPVAQAAKPGD 779
P G
Sbjct: 134 SPSTSVPSSGS 144
>gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional.
Length = 813
Score = 30.5 bits (69), Expect = 5.1
Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 3/89 (3%)
Query: 666 TPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEK 725
P K + + + K V EP +A + E + ++ +D +
Sbjct: 728 ERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNF--EPDSAFRGEKKAKPKAAKKDAR 785
Query: 726 PAVKTPAKPVAQAAKPAAAKKAESSSDDD 754
A K AK AA AK+A +
Sbjct: 786 KAKKPSAKTQKIAAA-TKAKRAAKKKVAE 813
>gnl|CDD|236304 PRK08581, PRK08581, N-acetylmuramoyl-L-alanine amidase; Validated.
Length = 619
Score = 30.5 bits (69), Expect = 5.3
Identities = 17/126 (13%), Positives = 38/126 (30%), Gaps = 16/126 (12%)
Query: 677 SSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVA 736
+ + S+ E+P + + S +D + ++ P +
Sbjct: 126 LFNLNSDISDYEQPRNS------EKSTNDSNKNSDSSIKNDTDTQSSKQDKADNQKAPSS 179
Query: 737 QAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRSPN--DF 794
KP+ + K +S ++ A SS + ++ S + D
Sbjct: 180 NNTKPSTSNKQPNSPKPTQPNQSNSQP--------ASDDTANQKSSSKDNQSMSDSALDS 231
Query: 795 ALWKKS 800
L + S
Sbjct: 232 ILDQYS 237
>gnl|CDD|226676 COG4223, COG4223, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 422
Score = 30.3 bits (68), Expect = 5.4
Identities = 18/103 (17%), Positives = 29/103 (28%), Gaps = 7/103 (6%)
Query: 663 SAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSE 722
+A+ PAAA++A + + E +A KA S+
Sbjct: 22 AAEQTDPAAAEEAADADQPKAEPVHADQTDLEADGVGQAGTEESAEAKAVEPEMPYPGSD 81
Query: 723 DEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVK 765
AA +A K ++ PA K
Sbjct: 82 APADRTAASDANAEDAAAARSASKPTATRG-------PTPAAK 117
>gnl|CDD|221825 pfam12877, DUF3827, Domain of unknown function (DUF3827). This
family contains the human KIAA1549 protein which has
been found to be fused fused to BRAF gene in many cases
of pilocytic astrocytomas. The fusion is due mainly to a
tandem duplication of 2 Mb at 7q34. Although nothing is
known about the function of KIAA1549 protein, the BRAF
protein is a well characterized oncoprotein. It is a
serine/threonine protein kinase which is implicated in
MAP/ERK signalling, a critical pathway for the
regulation of cell division, differentiation and
secretion.
Length = 684
Score = 30.3 bits (68), Expect = 5.5
Identities = 12/108 (11%), Positives = 23/108 (21%), Gaps = 2/108 (1%)
Query: 659 EIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDD 718
E++ P P K++ D + + K + + + S
Sbjct: 338 EMIIQEPAPLPPLKKESLPIEDAEVPTPKSKSSQDGSSNKKRRRGR--KSPSDGDSEGSS 395
Query: 719 SSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKA 766
S K E S ++ A
Sbjct: 396 VISNRSSREKSGRPSTTPSVTAQQKPTKEEGRKKPAPPSGTDEQLSSA 443
>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex
dihydrolipoamide acetyltransferase, long form. This
model describes a subset of pyruvate dehydrogenase
complex dihydrolipoamide acetyltransferase specifically
close by both phylogenetic and per cent identity (UPGMA)
trees. Members of this set include two or three copies
of the lipoyl-binding domain. E. coli AceF is a member
of this model, while mitochondrial and some other
bacterial forms belong to a separate model [Energy
metabolism, Pyruvate dehydrogenase].
Length = 546
Score = 30.2 bits (68), Expect = 5.5
Identities = 23/106 (21%), Positives = 34/106 (32%), Gaps = 21/106 (19%)
Query: 686 EDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDD-----SSSEDEKPAVKTPAKPVAQAAK 740
E +K +++ PA P + + K +S D S + PA A
Sbjct: 153 ESDKASMEVPA-PASGVVKSVKVKVGDSVPTGDLILTLSVAGSTPATAPAPASAQPAAQS 211
Query: 741 PAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEAS 786
PAA + APA AQA P +Q +
Sbjct: 212 PAA---------------TQPEPAAAPAAAKAQAPAPQQAGTQNPA 242
Score = 30.2 bits (68), Expect = 5.9
Identities = 21/116 (18%), Positives = 42/116 (36%), Gaps = 8/116 (6%)
Query: 661 VASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSS 720
VA + A A+ ++ S + + APA A A P ++ + + +
Sbjct: 191 VAGSTPATAPAPASAQPAAQ--SPAATQPEPAAAPAAAKAQAPAP-----QQAGTQNPAK 243
Query: 721 SEDEKPAVKTPAKPVA-QAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAA 775
+ PAV+ A+ + +D ++P+V+A A + A
Sbjct: 244 VDHAAPAVRRLAREFGVDLSAVKGTGIKGRILREDVQRFVKEPSVRAQAAAASAAG 299
>gnl|CDD|213844 TIGR03657, IsdB, heme uptake protein IsdB. Isd proteins are
iron-regulated surface proteins found in Bacillus,
Staphylococcus and Listeria species and are responsible
for heme scavenging from hemoproteins. The IsdB protein
is only observed in Staphylococcus and consists of an
N-terminal hydrophobic signal sequence, a pair of tandem
NEAT (NEAr Transporter, pfam05031) domains which confers
the ability to bind heme and a C-terminal sortase
processing signal which targets the protein to the cell
wall. IsdB is believed to make a direct contact with
methemoglobin facilitating transfer of heme to IsdB. The
heme is then transferred to other cell wall-bound NEAT
domain proteins such as IsdA and IsdC.
Length = 644
Score = 30.3 bits (67), Expect = 5.6
Identities = 37/138 (26%), Positives = 55/138 (39%), Gaps = 7/138 (5%)
Query: 655 EYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESS 714
+Y IV K A K + D+S+ ++ PA P+KP E ++K +S
Sbjct: 442 QYHVRIVDKEAFTKANADKTNKKEQQDNSAKKETTPA--TPSKPTTPPVE-KESQKQDSQ 498
Query: 715 SDDDS---SSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPV 771
DD+ S E E A K A KPA + ESSS + V P
Sbjct: 499 KDDNKQSPSVEKENDASSESGKDKTPATKPAKG-EVESSSTTPTKVVSTTQNVAKPTTAS 557
Query: 772 AQAAKPGDLSSQEASEKR 789
++ K +S +SE +
Sbjct: 558 SETTKDVVQTSAGSSEAK 575
>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed.
Length = 547
Score = 30.2 bits (69), Expect = 5.7
Identities = 33/147 (22%), Positives = 48/147 (32%), Gaps = 28/147 (19%)
Query: 653 VSEYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKP--VAHAAEPAAAKK 710
V+ P A+ PAAA A + +++ A A A P HA+ PA +
Sbjct: 194 VAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAPHAS-PAVRRL 252
Query: 711 AESSSDDDSS-----------SEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSED 759
A D S ED + VK A AA AAA
Sbjct: 253 ARELGVDLSQVKGTGKKGRITKEDVQAFVKGAMSAAAAAAAAAAAAGG------------ 300
Query: 760 EKPAVKAPAKPVAQAAKPGDLSSQEAS 786
+ P +K G++ ++ S
Sbjct: 301 --GGLGLLPWPKVDFSKFGEIETKPLS 325
Score = 29.8 bits (68), Expect = 9.0
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 689 KPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAA 743
+ A APA A AA AA A + + +++ PA PA A P A
Sbjct: 193 EVAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAA--AAPAAAAPAAAAAPGKAPHA 245
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
Provisional.
Length = 417
Score = 30.0 bits (67), Expect = 6.3
Identities = 10/40 (25%), Positives = 23/40 (57%)
Query: 648 TVLTRVSEYIPEIVASAQTPKPAAAKKAESSSDDDSSSED 687
++++ +E IP + ++++P P + + SSS S + D
Sbjct: 35 SIISTFTEIIPTEIPTSESPSPNSNSSSSSSSSSSSITYD 74
>gnl|CDD|237212 PRK12808, PRK12808, flagellin; Provisional.
Length = 476
Score = 29.9 bits (67), Expect = 6.3
Identities = 35/152 (23%), Positives = 57/152 (37%), Gaps = 11/152 (7%)
Query: 661 VASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSS 720
+A A AA KA+ + + S+ + A AA+ A K S+ ++
Sbjct: 196 IAKATVEAKAAFDKAKDDTKAEDSNILDAAADGFKDGKADDAAKDVEAIKTALSAFTGAA 255
Query: 721 SEDEKPAVKTPAKPVAQA------AKPAAAKKAESSSDDDSSSEDEKPAVK---APAKPV 771
+ +E A KT + + K A K A + D ++ A K A
Sbjct: 256 TLEEAEAAKTAFEVAQKDLVDTYTKKAALTKDAVADLDTAKTTSTRSKAAKDLVAAYDKA 315
Query: 772 AQAAKPGDLSS--QEASEKRSPNDFALWKKSK 801
AKP D++ EA ++ A+ KSK
Sbjct: 316 KSGAKPNDVAKAYLEAKMAYEKDNNAIDGKSK 347
>gnl|CDD|191582 pfam06679, DUF1180, Protein of unknown function (DUF1180). This
family consists of several hypothetical mammalian
proteins of around 190 residues in length. The function
of this family is unknown.
Length = 163
Score = 29.1 bits (65), Expect = 6.3
Identities = 18/77 (23%), Positives = 25/77 (32%)
Query: 699 VAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSE 758
A A A +A S++ E + P P A A SS D +
Sbjct: 21 ALLIAPAALASRAGSAASSQPGPETQPPLPPGPTPANPTALGSGDAAGGGGSSTSDGGAL 80
Query: 759 DEKPAVKAPAKPVAQAA 775
+P+ KP Q A
Sbjct: 81 ATRPSPLLRDKPTTQRA 97
>gnl|CDD|116408 pfam07794, DUF1633, Protein of unknown function (DUF1633). This
family contains sequences derived from a group of
hypothetical proteins expressed by Arabidopsis thaliana.
These sequences are highly similar and the region
concerned is about 100 residues long.
Length = 698
Score = 30.2 bits (67), Expect = 6.4
Identities = 25/115 (21%), Positives = 42/115 (36%), Gaps = 13/115 (11%)
Query: 638 DMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAK 697
AD + P E +P+I +P A ++ DS S E P ++
Sbjct: 281 APADPAIALPAAQLDPIEEVPQI-----EFRPQADFPIKNEIPKDSCSTSELPLIRRMRC 335
Query: 698 PVAHAAEPAAAKKAE--------SSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAA 744
H A A +++ + ++ + + P+ P A AA PAAA
Sbjct: 336 GSLHVQRANAEAHARADDLSAAVAAARNSLAASHAQASASHPSLPAANAANPAAA 390
>gnl|CDD|184885 PRK14891, PRK14891, 50S ribosomal protein L24e/unknown domain
fusion protein; Provisional.
Length = 131
Score = 28.8 bits (64), Expect = 6.6
Identities = 15/58 (25%), Positives = 26/58 (44%)
Query: 667 PKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDE 724
P AA AE++ + +++ DE A A A E +A + D++ +E E
Sbjct: 62 PAAAATAAAEAAEEAEAADADEDADEAAEADAADEADEEEETDEAVDETADEADAEAE 119
>gnl|CDD|177546 PHA03151, PHA03151, hypothetical protein; Provisional.
Length = 259
Score = 29.7 bits (66), Expect = 6.6
Identities = 28/148 (18%), Positives = 44/148 (29%), Gaps = 15/148 (10%)
Query: 669 PAAAKKAESSSDDD-----SSSED----EKPAVKAPAKPVAHAAEPAAAKKAESSSDDD- 718
P+ KAESSS D+ SS D P + + + D D
Sbjct: 47 PSENTKAESSSIDEDGLLTSSGSDSVFNSTDYESTPEPSKTPGFSDSNVSDSNNDKDFDF 106
Query: 719 -SSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQA--- 774
ED + + + SSS++D K + P A+
Sbjct: 107 KPQDEDTSSDDSSAPDFITSLVSSDCEARGLSSSEED-GEPYSKQKMSQPLTIDAKTEEI 165
Query: 775 AKPGDLSSQEASEKRSPNDFALWKKSKA 802
D QE S + + + +A
Sbjct: 166 TSEEDCCVQEDSSDSEEDVVEAFIRQRA 193
>gnl|CDD|206063 pfam13892, DBINO, DNA-binding domain. DBINO is a DNA-binding
domain found on global transcription activator SNF2L1
proteins and chromatin re-modelling proteins.
Length = 140
Score = 28.8 bits (65), Expect = 6.6
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 8/45 (17%)
Query: 53 KLVDKETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKK 97
K +KE E+E ++ AEK A ++ KK E +EAK Q+K
Sbjct: 79 KKNEKE----ERELRKR--AEKEALEQAKKEE--ELREAKRQQRK 115
>gnl|CDD|219401 pfam07404, TEBP_beta, Telomere-binding protein beta subunit (TEBP
beta). This family consists of several telomere-binding
protein beta subunits which appear to be specific to the
family Oxytrichidae. Telomeres are specialised
protein-DNA complexes that compose the ends of
eukaryotic chromosomes. Telomeres protect chromosome
termini from degradation and recombination and act
together with telomerase to ensure complete genome
replication. TEBP beta forms a complex with TEBP alpha
and this complex is able to recognise and bind ssDNA to
form a sequence-specific, telomeric nucleoprotein
complex that caps the very 3' ends of chromosomes.
Length = 375
Score = 30.1 bits (67), Expect = 6.7
Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 8/107 (7%)
Query: 709 KKAESSSDDDSSSEDEKPAVKTPAKPVAQAA--KPAAAKKAESSSDDDSSSEDEKPAVKA 766
K A + + D + K K K A++A K +AKK +S+S D +K
Sbjct: 226 KDALNKAADHTDVAKVKGGAKGKGKAAAKSAKGKKLSAKKGDSASSADVRKSVDKIVKYT 285
Query: 767 PAKPVAQAAKPGDLSSQEASEKRSPNDFALWKKSKAGEPWWSSPWGE 813
P KP ++ P + ++S K++ SK P SP G+
Sbjct: 286 PNKPSSRKETPQKSQAGKSSAKKTT------TGSKKAVPANPSPSGK 326
Score = 29.7 bits (66), Expect = 7.7
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Query: 673 KKAESSSDDDSSSEDEKPAVKAPAKPVAHAA--EPAAAKKAESSSDDDSSSEDEKPAVKT 730
K A + + D + K K K A +A + +AKK +S+S D +K T
Sbjct: 226 KDALNKAADHTDVAKVKGGAKGKGKAAAKSAKGKKLSAKKGDSASSADVRKSVDKIVKYT 285
Query: 731 PAKPVAQAAKPAAAKKAESSSDDDSSSEDEK-PAVKAPA 768
P KP ++ P ++ +SS+ ++ + PA +P+
Sbjct: 286 PNKPSSRKETPQKSQAGKSSAKKTTTGSKKAVPANPSPS 324
>gnl|CDD|236134 PRK07940, PRK07940, DNA polymerase III subunit delta'; Validated.
Length = 394
Score = 29.9 bits (68), Expect = 6.8
Identities = 19/71 (26%), Positives = 23/71 (32%), Gaps = 4/71 (5%)
Query: 30 RRLNPALKLPFLPLPSIGRPSAVKLVDKETLAKEKEAKRLAEAEKAAEKERKKAELAAAQ 89
R L L L + AV ++ A E EAK L AE E + L A
Sbjct: 221 ARRAEVLNLALR-LARVSD--AVAAAEELVKAAEAEAKALTAERDEAETEELRTALGAGG 277
Query: 90 EAKEAQKKIPP 100
K K
Sbjct: 278 TGKGP-AKALR 287
>gnl|CDD|235680 PRK06034, PRK06034, hypothetical protein; Provisional.
Length = 279
Score = 29.7 bits (67), Expect = 6.9
Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 4/49 (8%)
Query: 768 AKPVAQAAKPGDLSSQEASEKRSPNDFALWKKSKAGEPWWSSPWGEGRP 816
V + + + RS D L + + PWW EG P
Sbjct: 120 VPYVPHFSAQAVV----EAVARSKGDLGLVSLTSSDTPWWGRLEAEGAP 164
>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355). This
family of proteins is found in bacteria and viruses.
Proteins in this family are typically between 180 and
214 amino acids in length.
Length = 125
Score = 28.4 bits (64), Expect = 7.0
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 56 DKETLAKEKEAKRLAE--AEKAAEKERKKAELAAAQEAKEAQKKIPPSEMFKMETDKYSQ 113
+K+ K+ EA++LA+ AE+ AE E +K E E EA+ +++ +
Sbjct: 25 EKKQEEKKSEAEKLAKMSAEEKAEYELEKLE--KELEELEAELAR-----RELKAEAKKM 77
Query: 114 FDETVLPPTVLTRV 127
E LP +L V
Sbjct: 78 LSEKGLPVELLDLV 91
>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 624
Score = 30.0 bits (67), Expect = 7.5
Identities = 20/75 (26%), Positives = 27/75 (36%), Gaps = 2/75 (2%)
Query: 662 ASAQTPKPAAAKKAESSSDDDSSSEDEK--PAVKAPAKPVAHAAEPAAAKKAESSSDDDS 719
A+ TP P+AA DD + P AP P A A A +S +
Sbjct: 419 AAPATPAPSAAPSPRVPWDDAPPAPPRSGIPPRPAPRMPEASPVPGAPDSVASASDAPPT 478
Query: 720 SSEDEKPAVKTPAKP 734
+ A TP+ P
Sbjct: 479 LGDPSDTAEHTPSGP 493
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 29.8 bits (68), Expect = 7.6
Identities = 16/62 (25%), Positives = 35/62 (56%), Gaps = 8/62 (12%)
Query: 442 LRRILS---EYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQE--NEIQTSKILKDIG 496
L R ++ +YF+ I N+T+ D+++I A + K+ +E E+Q S+ L+++
Sbjct: 359 LNRTVAMINKYFDGEIPAPGNVTEFDEELIALAEETL---KNYEELMEELQFSRALEEVW 415
Query: 497 EV 498
++
Sbjct: 416 KL 417
>gnl|CDD|234634 PRK00103, PRK00103, rRNA large subunit methyltransferase;
Provisional.
Length = 157
Score = 28.9 bits (66), Expect = 7.6
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 30 RRLNPALKLPFLPLPSIGRPSAVKLVDKETLAKEKEAKRLAEA 72
+R LKL + +P RP D E + K KE +R+ A
Sbjct: 25 KRFPRYLKLELIEIPDEKRPKN---ADAEQI-KAKEGERILAA 63
>gnl|CDD|214551 smart00195, DSPc, Dual specificity phosphatase, catalytic domain.
Length = 138
Score = 28.8 bits (65), Expect = 7.9
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 7/62 (11%)
Query: 451 NYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQTSKILKDIGEV---MGAFESKMK 507
IT+ +N+T+ ++ + V ++ +KI E + ESK
Sbjct: 24 KLGITHVINVTNEVPNYNG---SDFTY-LGVPIDDNTETKISPYFPEAVEFIEDAESKGG 79
Query: 508 LV 509
V
Sbjct: 80 KV 81
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 29.9 bits (67), Expect = 7.9
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 724 EKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKP 770
+K KT +PV+ K + SS D++ E E VK+P KP
Sbjct: 256 KKECKKTRKQPVSAVYGKKDPSKPKGSSQLDANEEVEALIVKSPHKP 302
>gnl|CDD|99901 cd05840, SPBC215_ISWI_like, The PWWP domain is a component of the
S. pombe hypothetical protein SPBC215, as well as ISWI
complex protein 4. The ISWI (imitation switch) proteins
are ATPases responsible for chromatin remodeling in
eukaryotes, and SPBC215 is proposed to also bind
chromatin. The PWWP domain, named for a conserved
Pro-Trp-Trp-Pro motif, is a small domain consisting of
100-150 amino acids. The PWWP domain is found in
numerous proteins that are involved in cell division,
growth and differentiation. Most PWWP-domain proteins
seem to be nuclear, often DNA-binding, proteins that
function as transcription factors regulating a variety
of developmental processes.
Length = 93
Score = 27.7 bits (62), Expect = 8.0
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 189 VRGYPPWPARI 199
V+G+P WPA +
Sbjct: 11 VKGFPAWPAIV 21
>gnl|CDD|234404 TIGR03931, T7SS_Rv3446c, type VII secretion-associated protein,
Rv3446c family, C-terminal domain. Members of this
protein family occur as part of the ESX-4 cluster of
type VII secretion system (T7SS) proteins in
Mycobacterium tuberculosis and in similar T7SS clusters
in other Actinobacteria genera, including
Corynebacterium, Nocardia, Rhodococcus, and
Saccharopolyspora. This model describes the
better-conserved C-terminal region [Protein fate,
Protein and peptide secretion and trafficking].
Length = 172
Score = 29.0 bits (65), Expect = 8.0
Identities = 23/119 (19%), Positives = 38/119 (31%), Gaps = 11/119 (9%)
Query: 663 SAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAE-------PAAAKKAESSS 715
A + AK ESS+ ++ E PA P V E PA +
Sbjct: 2 GAPSGDTPKAKVRESSTAQATA-ESTTPAPPPPRPGVTRLVEGRVAVEVPAGWRLTGGPG 60
Query: 716 DD---DSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPV 771
+ D + P+ A A A + ++ D D + + + +PV
Sbjct: 61 SPRTQILTGADPNLRIHVTEDPLDGAGLDAVAAELRAAIDADPTFTELEEDDVVAGRPV 119
>gnl|CDD|213783 TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component,
alpha subunit. Members of this protein family are the
alpha subunit of the E1 component of pyruvate
dehydrogenase (PDH). This model represents one branch of
a larger family that E1-alpha proteins from
2-oxoisovalerate dehydrogenase, acetoin dehydrogenase,
another PDH clade, etc [Energy metabolism, Pyruvate
dehydrogenase].
Length = 341
Score = 29.4 bits (67), Expect = 8.1
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 9/52 (17%)
Query: 54 LVDKETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKKIPPSEMFK 105
L K +E+E EAE + +A A P ++F
Sbjct: 282 LERKGLWDEEQEEALEEEAEAEVAEAVAEAL---------ALPPPPVDDIFD 324
>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional.
Length = 331
Score = 29.6 bits (67), Expect = 8.3
Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 13/96 (13%)
Query: 662 ASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSS 721
A TP PAA D + + + PAV P + A A S ++ D+++
Sbjct: 171 DPATTPAPAAP-------VDTTPTNSQTPAVATAPAPAVDPQQNAVV--APSQANVDTAA 221
Query: 722 EDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSS 757
PA PA P A P S+ D ++
Sbjct: 222 T---PAPAAPATPDGAAPLPTDQ-AGVSTPAADPNA 253
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin. Trichoplein
or mitostatin, was first defined as a meiosis-specific
nuclear structural protein. It has since been linked
with mitochondrial movement. It is associated with the
mitochondrial outer membrane, and over-expression leads
to reduction in mitochondrial motility whereas lack of
it enhances mitochondrial movement. The activity appears
to be mediated through binding the mitochondria to the
actin intermediate filaments (IFs).
Length = 349
Score = 29.5 bits (67), Expect = 8.4
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 61 AKEKEAKRLAE---AEKAAEKERKKAELAAAQEAKEAQK 96
+EKE +R E E EK ++ E A + ++ +K
Sbjct: 142 EEEKEREREEELKILEYQREKAEREEEREAERRERKEEK 180
>gnl|CDD|191634 pfam06886, TPX2, Targeting protein for Xklp2 (TPX2). This family
represents a conserved region approximately 60 residues
long within the eukaryotic targeting protein for Xklp2
(TPX2). Xklp2 is a kinesin-like protein localised on
centrosomes throughout the cell cycle and on spindle
pole microtubules during metaphase. In Xenopus, it has
been shown that Xklp2 protein is required for centrosome
separation and maintenance of spindle bi-polarity. TPX2
is a microtubule-associated protein that mediates the
binding of the C-terminal domain of Xklp2 to
microtubules. It is phosphorylated during mitosis in a
microtubule-dependent way.
Length = 57
Score = 27.0 bits (60), Expect = 8.4
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 67 KRLAEAEKAAEKERKKAELAAAQEAKEAQKKIPPSEMFK 105
K+L E EKA E E+++AE +E +EA K++ + K
Sbjct: 15 KKLEEKEKALEAEKEEAEARQKEEEEEAIKQLRKELVPK 53
>gnl|CDD|165564 PHA03309, PHA03309, transcriptional regulator ICP4; Provisional.
Length = 2033
Score = 29.8 bits (66), Expect = 8.6
Identities = 37/165 (22%), Positives = 58/165 (35%), Gaps = 41/165 (24%)
Query: 663 SAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSE 722
S + P+ K+ SSS S+S D P+ + S D S
Sbjct: 1553 STKGPQRPGGKRPRSSSSSSSASHDRSPS-------------------SSSRRRDGRPSS 1593
Query: 723 DEKPA----VKTPAKPVAQAAKPAAAKKAE----------SSSDDDSSSEDEKPAVKAPA 768
+P+ + P++P A A+ + AE +S D++ ED P
Sbjct: 1594 RRRPSRRMSARPPSRPPAAVILRASWRYAEEVAREMLDAAASRFDEADGEDPLPPAACGG 1653
Query: 769 KPVA--------QAAKPGDLSSQEASEKRSPNDFALWKKSKAGEP 805
KP+A + G S A RS A ++S A +P
Sbjct: 1654 KPIAPETLVALCEQRGRGPTSLPRAPTPRSGEALAAPRRSGAKDP 1698
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 28.9 bits (65), Expect = 8.7
Identities = 14/102 (13%), Positives = 32/102 (31%), Gaps = 10/102 (9%)
Query: 698 PVAHAAEPAAAKKAESSSDDDSSS---EDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDD 754
A KK E + + + E+++ K K K + DD
Sbjct: 52 IYDAEYTEAKKKKKELAEEIEKVKKEYEEKQKWKW---KKKKSKKKKDKDKDKKDDKKDD 108
Query: 755 SSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRSPNDFAL 796
S + ++ + + + ++ + + P +AL
Sbjct: 109 KSEKKDEKEAEDKLEDLTKSYSE----TLSTLSELKPRKYAL 146
>gnl|CDD|215042 PLN00054, PLN00054, photosystem I reaction center subunit N;
Provisional.
Length = 139
Score = 28.6 bits (64), Expect = 9.1
Identities = 14/66 (21%), Positives = 27/66 (40%)
Query: 660 IVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDS 719
V+ + P A + ++ +S+ + A+ A + A AA+ A SD +
Sbjct: 2 AVSQMKMPVIKAQRVVRATGAVVDASDGRRAALVGLAATLFSTAAAAASANAGVISDLLA 61
Query: 720 SSEDEK 725
S+ K
Sbjct: 62 KSKANK 67
>gnl|CDD|215487 PLN02900, PLN02900, alanyl-tRNA synthetase.
Length = 936
Score = 29.6 bits (67), Expect = 9.2
Identities = 22/92 (23%), Positives = 31/92 (33%), Gaps = 11/92 (11%)
Query: 21 FQHLNQ--LLPRRLNPALKLPFLPLPSIGRPSAVKLVDKETLAKEKEA---------KRL 69
+ +N L R L+ ALK+ L ++ A +KE K L
Sbjct: 740 VEAINAADSLERELDSALKVEGSDLEKKVASLKSRVDAAVIPAAKKEEIRARVSALQKEL 799
Query: 70 AEAEKAAEKERKKAELAAAQEAKEAQKKIPPS 101
A+K A R K +A A E S
Sbjct: 800 RAAQKEAAALRAKLAVAKATELASKALSAGKS 831
>gnl|CDD|234311 TIGR03685, L12P_arch, 50S ribosomal protein L12P. This model
represents the L12P protein of the large (50S) subunit
of the archaeal ribosome.
Length = 105
Score = 27.7 bits (62), Expect = 9.3
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 693 KAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEK 725
KA A PVA AA AAA A +++ E+E+
Sbjct: 56 KAAAAPVAAAAAAAAAAAAAEEEEEEEEEEEEE 88
>gnl|CDD|150420 pfam09744, Jnk-SapK_ap_N, JNK_SAPK-associated protein-1. This is
the N-terminal 200 residues of a set of proteins
conserved from yeasts to humans. Most of the proteins
in this entry have an RhoGEF pfam00621 domain at their
C-terminal end.
Length = 158
Score = 28.5 bits (64), Expect = 9.4
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 56 DKETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKKI 98
D E L+ + E R E K AE++ + E QE KE QKKI
Sbjct: 58 DNERLSTQYE--REKELRKQAEQKLLEFEDELEQEKKELQKKI 98
>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family. This family of
proteins contain a band 4.1 domain (pfam00373), at their
amino terminus. This family represents the rest of these
proteins.
Length = 244
Score = 29.3 bits (66), Expect = 9.6
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 57 KETLAKEKEAKRLAEA--EKAAEKERKKAELAAAQEAKEAQKK 97
E E +L E +K AE + + EL AQEA E ++
Sbjct: 82 AEVDEATAEVAKLEEEREKKEAETRQLQQELREAQEAHERARQ 124
>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional.
Length = 246
Score = 29.3 bits (66), Expect = 9.6
Identities = 22/84 (26%), Positives = 30/84 (35%), Gaps = 18/84 (21%)
Query: 667 PKPAAAKKAESSSDDDSSSEDEKPAVKAP-AKPVAHAAEPAAAKKAESSSDDDSSSEDEK 725
PKP KK E E K VK +P + A A+ S++ +S K
Sbjct: 105 PKPKPVKKVE---------EQPKREVKPVEPRPASPFENTAPARPTSSTATAAAS----K 151
Query: 726 PAVKTPAKP----VAQAAKPAAAK 745
P + P Q PA A+
Sbjct: 152 PVTSVSSGPRALSRNQPQYPARAQ 175
>gnl|CDD|226435 COG3921, COG3921, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 300
Score = 29.4 bits (66), Expect = 9.6
Identities = 26/115 (22%), Positives = 39/115 (33%), Gaps = 18/115 (15%)
Query: 684 SSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEK-------PAVKTPAKPVA 736
++E ++ A +A +PVA SS DD + E + A PV
Sbjct: 36 ANEQKRIAEEAHPQPVA-----------RPSSTDDPVTPTEGKPVRPKGLPILALAGPVG 84
Query: 737 QAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRSP 791
+ +P + D + E P K P A+ A L S K P
Sbjct: 85 ELGQPMDLPAPANPGDPLALPEPPSPPTKPEEMPAAEVACRSALKSLGVEFKEVP 139
>gnl|CDD|184048 PRK13428, PRK13428, F0F1 ATP synthase subunit delta; Provisional.
Length = 445
Score = 29.3 bits (66), Expect = 9.7
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 60 LAKEKEA-KRLAEAEKAAEKERKKAELAAAQEAKEAQ 95
LA+ A RLAEA++A K + A+ AA+ +EA+
Sbjct: 41 LAESATAADRLAEADQAHTKAVEDAKAEAARVVEEAR 77
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional.
Length = 1355
Score = 29.7 bits (66), Expect = 9.9
Identities = 36/191 (18%), Positives = 63/191 (32%), Gaps = 14/191 (7%)
Query: 604 DPLSDWLDSLHGSSITD----NSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPE 659
DPL L+G+ IT+ + T + W A V V +
Sbjct: 308 DPL------LNGAPITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPAQPTVAWQ 361
Query: 660 IVASAQTPKPAAAKKAESSSDDDSSSEDEKP---AVKAPAKPVAHAAEPAAAKKAESSSD 716
V QT +P A E ++ ++ P +P PAA + A+
Sbjct: 362 PVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYY 421
Query: 717 DDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAK 776
+ + + PA A A++ +S+ S+ + E+ + PA +
Sbjct: 422 APAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQ-PAAQEPLYQQ 480
Query: 777 PGDLSSQEASE 787
P + Q E
Sbjct: 481 PQPVEQQPVVE 491
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.130 0.371
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 47,530,484
Number of extensions: 4716451
Number of successful extensions: 9809
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7711
Number of HSP's successfully gapped: 874
Length of query: 948
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 842
Effective length of database: 6,236,078
Effective search space: 5250777676
Effective search space used: 5250777676
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (28.3 bits)