RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6851
(948 letters)
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine,
E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1
c.26.1.1 PDB: 1li7_A 1u0b_B
Length = 461
Score = 163 bits (416), Expect = 2e-43
Identities = 46/73 (63%), Positives = 51/73 (69%)
Query: 785 ASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLK 844
+KR+P DF LWK SK GEP W SPWG GRPGWHIECS M LG DIH GG DL
Sbjct: 172 VDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLM 231
Query: 845 FPHHDNELAQAEG 857
FPHH+NE+AQ+
Sbjct: 232 FPHHENEIAQSTC 244
Score = 69.9 bits (172), Expect = 2e-12
Identities = 21/42 (50%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQN 474
G++++ FD++ R L + Y + Y NITDIDDKIIKRA +N
Sbjct: 41 GRTFVAFDVVARYL-RFLGYKLKYVRNITDIDDKIIKRANEN 81
Score = 62.9 bits (154), Expect = 3e-10
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 118 VLPPTVLTRVSEYIPEIVASYIEKIIANGLAYE-SNGSVYFNVNAFDSQPNHYYAKL 173
+L P + R + +I EI+ E++IA G AY NG V F+V + Y L
Sbjct: 105 ILRPDMEPRATHHIAEIIE-LTEQLIAKGHAYVADNGDVMFDVPTDPT-----YGVL 155
Score = 50.2 bits (121), Expect = 2e-06
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 633 AEFHKDMADLNVLPPTVLTRVSEYIPEIVA 662
AE HKD LN+L P + R + +I EI+
Sbjct: 94 AEMHKDFDALNILRPDMEPRATHHIAEIIE 123
Score = 33.3 bits (77), Expect = 0.35
Identities = 26/131 (19%), Positives = 43/131 (32%), Gaps = 20/131 (15%)
Query: 302 KNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGTPNQLLLRDIGAYVTKILTVFGCIGD 361
+ A+ D+ +T A + D +VN + +++ K+ V G +
Sbjct: 339 EARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAEDMAA--ANAMASHLRKLSAVLGLLEQ 396
Query: 362 VKNIGFPLGGT--GVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLRDE 419
G E +E L+ R +AR K D RD
Sbjct: 397 EPEAFLQSGAQADDSEVAEIEALI------------QQRLDARKAKDWA---AADAARDR 441
Query: 420 VLPNVGVRLED 430
L +G+ LED
Sbjct: 442 -LNEMGIVLED 451
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A
{Coxiella burnetii}
Length = 462
Score = 163 bits (414), Expect = 3e-43
Identities = 50/73 (68%), Positives = 59/73 (80%)
Query: 785 ASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLK 844
+ KR P DF LWKK+K GEP W SPWGEGRPGWHIECS M+S++LG DIH GG+DLK
Sbjct: 175 SDSKRDPLDFVLWKKAKPGEPKWDSPWGEGRPGWHIECSAMSSSILGQPFDIHGGGLDLK 234
Query: 845 FPHHDNELAQAEG 857
FPHH+NE+AQ+E
Sbjct: 235 FPHHENEIAQSEA 247
Score = 70.6 bits (174), Expect = 8e-13
Identities = 23/42 (54%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQN 474
G+S+I FD++ R L Y +T+ NITDIDDKIIKRA +N
Sbjct: 44 GRSWIIFDMVVRYL-RMRGYEVTFVRNITDIDDKIIKRAGEN 84
Score = 62.9 bits (154), Expect = 2e-10
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
Query: 118 VLPPTVLTRVSEYIPEIVASYIEKIIANGLAYES-NGSVYFNVNAFDSQPNHYYAKL 173
VL P R ++Y+PEI+ I+K++ N AY NG V+F+V F Y KL
Sbjct: 108 VLSPDQEPRATQYVPEIIK-LIQKLLDNQYAYTGQNGDVFFDVRRFKD-----YGKL 158
Score = 49.5 bits (119), Expect = 3e-06
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 633 AEFHKDMADLNVLPPTVLTRVSEYIPEIVA 662
H+D L VL P R ++Y+PEI+
Sbjct: 97 QILHEDEKALRVLSPDQEPRATQYVPEIIK 126
Score = 38.3 bits (90), Expect = 0.011
Identities = 22/129 (17%), Positives = 52/129 (40%), Gaps = 17/129 (13%)
Query: 302 KNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGTPNQLLLRDIGAYVTKILTVFGCIGD 361
+ + A+ D+ +T A + + + ++N + + + A + + +FG +
Sbjct: 341 TDRFYEAMDDDFNTPIAFALLFEMVREINRFRDNNQIE-KAAVLAAELKCLGNIFGLLQY 399
Query: 362 VKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLRDEVL 421
+ +++L+ + R EAR K + D++RD+ L
Sbjct: 400 SPEQFLQGAKKEADVQEIKKLI------------DQRNEARAKKDWK---TADQIRDQ-L 443
Query: 422 PNVGVRLED 430
++GV +ED
Sbjct: 444 TDLGVAIED 452
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA
inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA
synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium
smegmatis}
Length = 414
Score = 158 bits (403), Expect = 3e-42
Identities = 36/75 (48%), Positives = 45/75 (60%)
Query: 784 EASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDL 843
+ K D LW+ + GEP W SP+G GRPGWH+ECS +A +G LDI GG DL
Sbjct: 195 DRPGKSDQLDALLWRAERPGEPSWPSPFGRGRPGWHVECSAIALTRIGTGLDIQGGGSDL 254
Query: 844 KFPHHDNELAQAEGL 858
FPHH+ A AE +
Sbjct: 255 IFPHHEYSAAHAESV 269
Score = 67.7 bits (166), Expect = 6e-12
Identities = 13/40 (32%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 435 SYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQN 474
+Y+TFD++ R+ + + Y N+TD+DD + +RA ++
Sbjct: 60 TYLTFDLVHRLW-LDAGHTVQYVQNVTDVDDPLFERAERD 98
Score = 58.4 bits (142), Expect = 5e-09
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 118 VLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGS----VYFNVNAFDSQPNHYYAKL 173
VLPP ++ I E+V +EK++A+G AY + VYF +A +
Sbjct: 122 VLPPHDYVAATDAIAEVVE-MVEKLLASGAAYIVEDAEYPDVYFRADATAQ-----FGYE 175
Score = 49.9 bits (120), Expect = 3e-06
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 632 EAEFHKDMADLNVLPPTVLTRVSEYIPEIVA 662
F +DMA L VLPP ++ I E+V
Sbjct: 110 TQLFREDMAALRVLPPHDYVAATDAIAEVVE 140
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, LYME
disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Length = 501
Score = 157 bits (400), Expect = 3e-41
Identities = 34/77 (44%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 784 EASEKRSPNDFALWKKSKA---GEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGG 840
KR+ DF LW + E W SPWG G P WH+EC+ M LDIH GG
Sbjct: 201 VDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKDALDIHLGG 260
Query: 841 VDLKFPHHDNELAQAEG 857
VD HH NE+A AE
Sbjct: 261 VDHIGVHHINEIAIAEC 277
Score = 70.7 bits (174), Expect = 1e-12
Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 118 VLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPNHYYAKL 173
++ P + S++IP ++ ++ + + Y SNG+VYF+ + F S Y ++
Sbjct: 135 IVYPDKVLVASKHIPIMIE-VVKILEEKKITYFSNGNVYFDTSCFKS-----YGEM 184
Score = 64.9 bits (159), Expect = 5e-11
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 11/52 (21%)
Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDI----------DDKIIKRARQN 474
++YI D+L + L + Y + YAMNITDI +DK+ K AR+
Sbjct: 61 FRTYIFGDLLIKTL-RFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREK 111
Score = 49.5 bits (119), Expect = 4e-06
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 633 AEFHKDMADLNVLPPTVLTRVSEYIPEIVA 662
F D LN++ P + S++IP ++
Sbjct: 124 EAFFNDCRKLNIVYPDKVLVASKHIPIMIE 153
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural
genomics consortium, SGC, protein binding; HET: M3L;
1.95A {Homo sapiens} PDB: 3qj6_A* 3eae_A 1n27_A
Length = 94
Score = 57.0 bits (137), Expect = 3e-10
Identities = 30/60 (50%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 187 GEVRGYPPWPARIEGLADET--PNRLKYHIFFYGTRETGICRQDELFPYTEFKDKYGKVR 244
+++GYP WPARI+ +AD P KY IFF+GT ET +LFPY + KDKYGK
Sbjct: 14 AKMKGYPHWPARIDDIADGAVKPPPNKYPIFFFGTHETAFLGPKDLFPYDKCKDKYGKPN 73
>2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2
Length = 110
Score = 54.6 bits (131), Expect = 3e-09
Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 7/69 (10%)
Query: 189 VRGYPPWPARI-------EGLADETPNRLKYHIFFYGTRETGICRQDELFPYTEFKDKYG 241
+ Y WPA I + + + +FF+G+ + Q +FPY E +
Sbjct: 19 LGNYRWWPAEICNPRSVPLNIQGLKHDLGDFPVFFFGSHDYYWVHQGRVFPYVEGDKSFA 78
Query: 242 KVRVHLSQK 250
+ + +++
Sbjct: 79 EGQTSINKT 87
>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain,
heparin-binding, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A
Length = 110
Score = 54.0 bits (129), Expect = 5e-09
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 187 GEVRGYPPWPARIEGLADETPNRL--KYHIFFYGTRETGICRQDELFPYTEFKDKYGKVR 244
+++GYP WPARI+ + + KY +FF+GT ET +LFPY E K+K+GK
Sbjct: 28 AKMKGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHETAFLGPKDLFPYEESKEKFGKPN 87
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.9 bits (139), Expect = 2e-08
Identities = 87/599 (14%), Positives = 173/599 (28%), Gaps = 165/599 (27%)
Query: 90 EAKEAQ---KKIPP--SEMFKMETD------------KYSQFDETVLPPTVLTRV----- 127
E E Q K I + F D + D ++ ++
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69
Query: 128 --SEYIPEIVASYIEKI-------IANGLAYESNGSVYFNVNAFDSQPNHYYAKLVPEAY 178
E+V ++E++ + + + E S Y + Y
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP---------SMMTRMYIEQRDRLY 120
Query: 179 GDTKTLQEGEV-RGYPPWPAR-------------IEG--------LADETPNRLKYHIFF 216
D + + V R P R I+G +A + K
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 217 YGTRETGI-------CRQDELF-------------PYTEFKDKYGKVRVHLSQKQQSLKL 256
I C E +T D +++ + Q L+
Sbjct: 181 DF----KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 257 VVIMKEFF--LNVKDHIRNLKFPATTVSSFEKWTQADLE----LSTR------FIQTKNN 304
++ K + L V +++N K ++F +L L+TR F+
Sbjct: 237 LLKSKPYENCLLVLLNVQNAK----AWNAF------NLSCKILLTTRFKQVTDFLSAATT 286
Query: 305 VHAALCDNMDTRSALDSIRDCISQVNIYLRGTPNQ------LLLRDIGAYVTKILTVFGC 358
H +L + T + + + ++ + P + L I +
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE----SIRDGLA 342
Query: 359 IGD-VKNIGFPLGGTGVEST--NLEELVL-PYLTILSEFRDNIR-TEARL------IKST 407
D K++ T +ES+ LE LS F + L + +
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402
Query: 408 E---ILNQCDR--LRDEVLPNVGVRLEDIEGKSYITFDIL----RRILSEYFNYNITYAM 458
+ ++N+ + L ++ + + I + + + R I+ Y N T+
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY-NIPKTF-- 459
Query: 459 NITDIDDKIIKRARQNYLFEK---HVQENEIQT------SKILKDIGEVMGAF-ESKMKL 508
D DD I Y + H++ E + D F E K++
Sbjct: 460 ---DSDDLIPPYLD-QYFYSHIGHHLKNIE-HPERMTLFRMVFLDFR-----FLEQKIRH 509
Query: 509 VTDPDKLTM-MKNILSNVQEAKQ---DISAQPEGTINNIKNVTFQKLLTAVRDPFSDWL 563
+ + + N L ++ K D + E +N I + + + ++D L
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL 568
Score = 55.2 bits (132), Expect = 1e-07
Identities = 101/691 (14%), Positives = 178/691 (25%), Gaps = 230/691 (33%)
Query: 377 TNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLR----DEVLPNVGVRLEDIE 432
E Y ILS F D + + + + D + E + ++ + +D
Sbjct: 9 FETGEHQYQYKDILSVFEDAF------VDNFDCKDVQDMPKSILSKEEIDHI-IMSKDAV 61
Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNY--LFEKHVQENEIQTSK 490
+ F L E + ++ R NY L ++ + Q S
Sbjct: 62 SGTLRLFWTLLSKQEE------MVQKFVEEVL-------RINYKFLMSP-IKTEQRQPSM 107
Query: 491 ILKDIGEVMGAFESKM-KLVTDPDKLTMMKNILSNVQEAKQDISAQPEGTINNIKNVTFQ 549
+ + + + +L D NV + ++
Sbjct: 108 MTR-------MYIEQRDRLYNDNQVFAKY-----NVSRLQP---------YLKLRQA--- 143
Query: 550 KLLTAVRDPFSDWLDSLHG------SSIT-----DNSIFATLPK--HW-----EAEFHKD 591
L +R + + + G + + + + W
Sbjct: 144 --LLELRP--AKNV-LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 592 MADLNKLLTAVRDPLSDWLDSLHGSSITDNSIFATL---------------------PKH 630
+ L KLL + + D + +SI A L K
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 631 WEAEFHKDMADLN--VLPPTVLTRVSEYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDE 688
W A F +L+ +L + TR + + + +++A T S D S +
Sbjct: 259 WNA-F-----NLSCKIL---LTTRFKQ-VTDFLSAATTTHI--------SLDHHSMTLTP 300
Query: 689 KPAVKAPAKPVAHAAE--PAAAKK---------AESSSDDDSSSEDEKPAVKTPAKPVAQ 737
K + + P AES D ++ ++ K
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK-----------H 349
Query: 738 AAKPAAAKKAESSSDDDSSSEDEK---------PAVKAPAK----------------PVA 772
ESS + +E K P+ P V
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409
Query: 773 QAAKPGDLSSQEASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWH---IEC-----SV 824
+ K + Q S L K K E H ++ +
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKL----------ENEYALHRSIVDHYNIPKTF 459
Query: 825 MASAVLGPQLD----IHTGGVDLKFPHHDNELAQAEGLPTHDQEGKELSKG------LAK 874
+ ++ P LD H G HH L E H + L +
Sbjct: 460 DSDDLIPPYLDQYFYSHIG-------HH---LKNIE----HPERMTLFRMVFLDFRFLEQ 505
Query: 875 KLKKLQ------------LTQEKKYNEYIASVQKATLHGL---LVCFCFQGLPTHDQEGK 919
K++ L Q K Y YI L ++ F LP +
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYI-CDNDPKYERLVNAILDF----LPKI---EE 557
Query: 920 ELSKGLAKKLKKLQLTQEKK--YNEYIASVQ 948
L L ++ L E + + E VQ
Sbjct: 558 NLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.0 bits (137), Expect = 3e-08
Identities = 85/471 (18%), Positives = 146/471 (30%), Gaps = 143/471 (30%)
Query: 264 FLNVKDHIRNLKFPATTVSSFEKWTQADL-ELSTRFIQTKNNVHAALCD-NMDTRSALDS 321
FL ++ +L P+ V F++ L E +++ N++HA + + L
Sbjct: 64 FL---GYVSSLVEPSK-VGQFDQVLNLCLTEFENCYLEG-NDIHALAAKLLQENDTTLVK 118
Query: 322 IRDCI-------SQVNIYLRGTPNQLLLRDIGAYVTKILTVFGCIGDVKNIGFPLGGTGV 374
++ I N L R +G +++ +FG G G
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG-------------GQGN 165
Query: 375 ESTNLEELVLPYLT---ILSEFRDNIRTEARLIKSTEILNQCDRLRDEVLPNVGVRLEDI 431
EEL Y T ++ + + L + +++ + L N+ LE+
Sbjct: 166 TDDYFEELRDLYQTYHVLVGDLIK--FSAETLSELIRTTLDAEKVFTQGL-NILEWLENP 222
Query: 432 E---GKSYIT----------------FDILRRIL----SEYFNY---------NITYAMN 459
K Y+ + + ++L E +Y + A+
Sbjct: 223 SNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA 282
Query: 460 ITDIDD-----KIIKRARQNYLFE--KHVQENEIQTS---KILKDIGEVMGAFESKMKLV 509
I + D +++A LF E TS IL+D E S M +
Sbjct: 283 IAETDSWESFFVSVRKAIT-VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI 341
Query: 510 TDPDKLTMMKNIL---SNVQEAKQ-DISAQPEGTINNIKN--VT-FQKLLTAVRDPFSDW 562
++ + + + S++ KQ +IS +N KN V+ + L +
Sbjct: 342 SNLTQEQVQDYVNKTNSHLPAGKQVEIS-----LVNGAKNLVVSGPPQSLYG----LNLT 392
Query: 563 LDSLHGSSITDNS-----------------IFATLPKHWEAEFH------------KDMA 593
L S D S + + P FH KD+
Sbjct: 393 LRKAKAPSGLDQSRIPFSERKLKFSNRFLPVAS--P------FHSHLLVPASDLINKDLV 444
Query: 594 DLN------KLLTAVRDPLSDWLD--SLHGS---SITDNSIFATLPKHWEA 633
N + V D D D L GS I D I LP WE
Sbjct: 445 KNNVSFNAKDIQIPVYDT-FDGSDLRVLSGSISERIVD-CII-RLPVKWET 492
Score = 47.0 bits (111), Expect = 3e-05
Identities = 89/540 (16%), Positives = 146/540 (27%), Gaps = 217/540 (40%)
Query: 17 PNLQFQHLNQLLPRRLNPALKLPF---LPLPSIG-----RPSAV------------KLVD 56
P F +QL + F LP P+ G P+ LV+
Sbjct: 23 PTASFFIASQL---------QEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVE 73
Query: 57 KETLAKEKE----------------------AKRLAEAEKAAEKERK---KAELAAAQEA 91
+ + + A +L + + K K + A A
Sbjct: 74 PSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMA 133
Query: 92 KEAQKKIPPSEMFKMETDK----YSQF----------DE-----TVLPPTVLTRVSEYIP 132
K K S +F+ + + F +E V + I
Sbjct: 134 KRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHV----LVGDLI- 188
Query: 133 EIVASYIEKIIANGLAYESNGSVYFNVNAF----DSQPNHYYAKLVPEAY---GDTKTLQ 185
+ A + ++I L E + N+ + + P+ Y +P + G +
Sbjct: 189 KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAH 248
Query: 186 ---EGEVRGYPP--WPARIEGL---------------ADE-------TPNRLKYHIFFYG 218
++ G+ P + ++G D + +FF G
Sbjct: 249 YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV-LFFIG 307
Query: 219 TRETGICRQDELFPYTEF------------------------------KDKYGKVRVHLS 248
R C + +P T +D K HL
Sbjct: 308 VR----CYE--AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLP 361
Query: 249 QKQQ-SLKLV------VI------MKEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELS 295
+Q + LV V+ + L +R K P+ S +++ L+ S
Sbjct: 362 AGKQVEISLVNGAKNLVVSGPPQSLYGLNL----TLRKAKAPSGLDQSRIPFSERKLKFS 417
Query: 296 TRF------------------IQT---KNNV---HAAL-------CDNMDTR----SALD 320
RF I KNNV + D D R S +
Sbjct: 418 NRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISE 477
Query: 321 SIRDCISQVNIYLRGTPNQLLLRDIGAYVTKILTVFGCIGDVKNIGFPL-----GGTGVE 375
I DCI ++ + T T IL FG G +G L GTGV
Sbjct: 478 RIVDCIIRLPVKWETTTQ--------FKATHIL-DFG-PGGASGLG-VLTHRNKDGTGVR 526
Score = 46.6 bits (110), Expect = 4e-05
Identities = 103/582 (17%), Positives = 176/582 (30%), Gaps = 200/582 (34%)
Query: 87 AAQEAKEA-QKKIPPSEMFKMETDKYSQFDETVLPPTVLTR----VSEYIPEIVASYIEK 141
A + +E K +P T+ ++ DE P ++ + VS + ++
Sbjct: 29 IASQLQEQFNKILPEP------TEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQ 82
Query: 142 IIANGL-AYESNGSVYF----NVNAFDSQPNHYYAKLVPEAYGDTKTLQEGEV-RGY--- 192
++ L +E+ + +++A AKL+ E DT ++ E+ + Y
Sbjct: 83 VLNLCLTEFENC----YLEGNDIHAL-------AAKLLQEN--DTTLVKTKELIKNYITA 129
Query: 193 -----PPWPARIEGL----ADETPNRLKYHIFFYGTRETGICRQ---DELFPYTEFKDKY 240
P+ + E +L IF G G Q D+ F E +D Y
Sbjct: 130 RIMAKRPFDKKSNSALFRAVGEGNAQL-VAIF--G----G---QGNTDDYFE--ELRDLY 177
Query: 241 GKVRVHLSQKQQSLKLVVIMKEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQ 300
V + + + + L T EK L + +++
Sbjct: 178 QTYHVLV-------------GDLIKFSAETLSEL---IRTTLDAEKVFTQGLNI-LEWLE 220
Query: 301 TKNNVHAALCDNMDTRSALDS---IRDCISQVNIYLR-----G-TPNQLLLRDIGAYVTK 351
+N D S S I + Q+ Y+ G TP +L GA
Sbjct: 221 NPSNTP----DKDYLLSIPISCPLI--GVIQLAHYVVTAKLLGFTPGELRSYLKGA---- 270
Query: 352 ILTVFGCIGDVKNIGFPLGGTGVEST----NLEELVLPYLTILSEFRDNIR-TEA--RLI 404
G + + + T + V +T+L F +R EA
Sbjct: 271 ----TGHSQGL------VTAVAIAETDSWESFFVSVRKAITVL--FFIGVRCYEAYPNTS 318
Query: 405 KSTEILNQCDRLRDEVLP----NV-GVRLEDIEGKSYITFDILRRILSEYF--------- 450
IL +E +P ++ + E ++ Y+ + L
Sbjct: 319 LPPSILEDSLE-NNEGVPSPMLSISNLTQEQVQ--DYV--NKTNSHLPAGKQVEISLVNG 373
Query: 451 --NYNIT------YAMNITDIDDKIIKRARQNYLFEKHVQENEIQTSKILKDIGEVMGAF 502
N ++ Y +N+T K + + S+I F
Sbjct: 374 AKNLVVSGPPQSLYGLNLT---------------LRKAKAPSGLDQSRIP---------F 409
Query: 503 ESKMKL--------VTDP--DKLTMMKNILSNVQEA-KQDISAQPEGTINNIKNVTF--Q 549
S+ KL V P L L + +D+ NV+F +
Sbjct: 410 -SERKLKFSNRFLPVASPFHSHL------LVPASDLINKDLVKN---------NVSFNAK 453
Query: 550 KLLTAVRDPFSDWLD--SLHGS---SITDNSIFATLPKHWEA 586
+ V D F D D L GS I D I LP WE
Sbjct: 454 DIQIPVYDTF-DGSDLRVLSGSISERIVD-CII-RLPVKWET 492
Score = 42.0 bits (98), Expect = 0.001
Identities = 47/265 (17%), Positives = 85/265 (32%), Gaps = 90/265 (33%)
Query: 433 GKS-YITFDILRRILSE---YFNYNITYAMNITDI-----DDKII-------KRARQNY- 475
G Y T + + + +F TY +I DI + I KR R+NY
Sbjct: 1632 GMDLYKTSKAAQDVWNRADNHFKD--TYGFSILDIVINNPVNLTIHFGGEKGKRIRENYS 1689
Query: 476 -LFEKHVQENEIQTSKILKDIGEVMGA--FESKMKLVTDPDKLTMMKNILSNVQEAKQDI 532
+ + + + +++T KI K+I E + F S + L+ +
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEINEHSTSYTFRS------EKGLLSATQF------------ 1731
Query: 533 SAQPEGTINNIKNVTFQKLLTAVRDPFSDWLDSLHGSSITDNSIFATLPKH----WEAEF 588
QP L + F D G I ++ FA H + A
Sbjct: 1732 -TQP-------------ALTLMEKAAFEDLKS--KG-LIPADATFA---GHSLGEYAA-- 1769
Query: 589 HKDMADLNKLLTAVRD--PLSDWLDSLH--GSSITDNSIFATLPKHWEAEFHKDMADLNV 644
L ++ D + ++ + G ++ +P+ + M +N
Sbjct: 1770 ----------LASLADVMSIESLVEVVFYRGMTMQV-----AVPRDELGRSNYGMIAIN- 1813
Query: 645 LPPTVLTRVS-EYIPEIV--ASAQT 666
P V S E + +V +T
Sbjct: 1814 -PGRVAASFSQEALQYVVERVGKRT 1837
Score = 29.6 bits (66), Expect = 5.7
Identities = 15/120 (12%), Positives = 37/120 (30%), Gaps = 20/120 (16%)
Query: 701 HAAEPAAAKKAESSSDDDSSSEDEKPA-----VKTPAKPVAQAAKPAAAKKA----ESS- 750
+ P + ++DD+ ++ E V + +P E+
Sbjct: 38 NKILPEPTE--GFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY 95
Query: 751 -SDDD-----SSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRSPNDFALWKKSKAGE 804
+D + E K + + + ++ +K+S + AL++ G
Sbjct: 96 LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS--ALFRAVGEGN 153
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel
followed by five-helix bundle; HET: DNA; 1.80A {Mus
musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A*
Length = 147
Score = 50.2 bits (119), Expect = 2e-07
Identities = 12/73 (16%), Positives = 23/73 (31%), Gaps = 8/73 (10%)
Query: 178 YGDTKTLQEGE-----VRGYPPWPARIEGLAD---ETPNRLKYHIFFYGTRETGICRQDE 229
Y D K G+ ++G+ WPA + + ++G + D+
Sbjct: 6 YQDDKEFGIGDLVWGKIKGFSWWPAMVVSWKATSKRQAMPGMRWVQWFGDGKFSEISADK 65
Query: 230 LFPYTEFKDKYGK 242
L F +
Sbjct: 66 LVALGLFSQHFNL 78
>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase,
methylysine binding, STR genomics consortium, SGC,
alternative promoter usage; HET: DNA BTB; 2.30A {Homo
sapiens}
Length = 154
Score = 50.2 bits (119), Expect = 2e-07
Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 187 GEVRGYPPWPARIEGLAD---ETPNRLKYHIFFYGTRETGICRQDELFPYTEFKDKYGKV 243
G++RG+ WP RI + ++G + + ++L P + F + +
Sbjct: 25 GKLRGFSWWPGRIVSWWMTGRSRAAEGTRWVMWFGDGKFSVVCVEKLMPLSSFCSAFHQA 84
Query: 244 R 244
Sbjct: 85 T 85
>2l89_A PWWP domain-containing protein 1; histone binding, protein binding;
NMR {Schizosaccharomyces pombe}
Length = 108
Score = 46.5 bits (110), Expect = 2e-06
Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 7/56 (12%)
Query: 189 VRGYPPWPARI-------EGLADETPNRLKYHIFFYGTRETGICRQDELFPYTEFK 237
GYP WPA + + L + + Y + F+ +++ + P + +
Sbjct: 16 APGYPWWPALLLRRKETKDSLNTNSSFNVLYKVLFFPDFNFAWVKRNSVKPLLDSE 71
>1h3z_A Hypothetical 62.8 kDa protein C215.07C; nuclear protein, PWWP,
chromatin, beta-barrel; NMR {Schizosaccharomyces pombe}
SCOP: b.34.9.2
Length = 109
Score = 45.4 bits (107), Expect = 5e-06
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 9/56 (16%)
Query: 189 VRGYPPWPARIEGLADETPNRLK---------YHIFFYGTRETGICRQDELFPYTE 235
+ G+P WP+ + + T K Y + F+ +E D L P T
Sbjct: 17 MSGFPWWPSMVVTESKMTSVARKSKPKRAGTFYPVIFFPNKEYLWTGSDSLTPLTS 72
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 47.6 bits (112), Expect = 2e-05
Identities = 18/127 (14%), Positives = 43/127 (33%), Gaps = 1/127 (0%)
Query: 665 QTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDE 724
+ + E++ ++S + E + ++ A + + A + + +
Sbjct: 12 HQLENLYFQGEETAVPENSGANTELVSGESEHST-NEADKQNEGEHARENKLEKAEGVAT 70
Query: 725 KPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQE 784
+PA A + A A A + S E P+ +A K + + ++Q
Sbjct: 71 ASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQG 130
Query: 785 ASEKRSP 791
K +
Sbjct: 131 DESKPAA 137
Score = 43.0 bits (100), Expect = 5e-04
Identities = 20/166 (12%), Positives = 45/166 (27%), Gaps = 5/166 (3%)
Query: 658 PEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDD 717
+ +P A E++ ++ +EK + + A+ + A+P + K+ E+ +
Sbjct: 68 VATASETASPASNEAATTETAEAASAAKPEEKAS-EVVAETPSAEAKPKSDKETEAKPEA 126
Query: 718 DSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKP 777
+ ++ KPA + + + + E+ P
Sbjct: 127 TNQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEP----GAREDD 182
Query: 778 GDLSSQEASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECS 823
R K SK + S
Sbjct: 183 AINRGSVVLASRRTGHLVNEKASKEAKVQALSNTNSKAKDHASVGG 228
>2gfu_A DNA mismatch repair protein MSH6; PWWP domain, tudor domain, DNA
binding, DNA binding protein; HET: DNA; NMR {Homo
sapiens}
Length = 134
Score = 43.6 bits (102), Expect = 3e-05
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 7/76 (9%)
Query: 187 GEVRGYPPWPARIEGLADETP------NRLKYHI-FFYGTRETGICRQDELFPYTEFKDK 239
++ GYP WP+ + + ++ H+ FF + G + L PYT K K
Sbjct: 31 AKMEGYPWWPSLVYNHPFDGTFIREKGKSVRVHVQFFDDSPTRGWVSKRLLKPYTGSKSK 90
Query: 240 YGKVRVHLSQKQQSLK 255
+ H + +
Sbjct: 91 EAQKGGHFYSAKPEIL 106
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 41.7 bits (97), Expect = 3e-04
Identities = 15/86 (17%), Positives = 34/86 (39%), Gaps = 19/86 (22%)
Query: 46 IGRPSAVKLVDKETLAK--EKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKKIPPSEM 103
I + + + E++ K E++ KRL E A + + E ++A+K +
Sbjct: 74 IAQADRLTQ-EPESIRKWREEQRKRL--QELDAASKVMEQEW-----REKAKKDL----- 120
Query: 104 FKMETDKYSQFDETVLPPTVLTRVSE 129
+ + E V + R+++
Sbjct: 121 ----EEWNQRQSEQVEKNKINNRIAD 142
Score = 29.0 bits (64), Expect = 5.1
Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 7/49 (14%)
Query: 56 DKETLAKEKEAKRLAEAEKAA-------EKERKKAELAAAQEAKEAQKK 97
D + E+E + A+ + + E+ K A +A Q
Sbjct: 102 DAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPD 150
>3ecq_A Protein SPR0328, endo-alpha-N-acetylgalactosaminidase; distorted
(beta/alpha)8 (TIM) barrel glycoside hydrolase DOM WALL;
2.90A {Streptococcus pneumoniae}
Length = 1531
Score = 39.1 bits (90), Expect = 0.008
Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 3/98 (3%)
Query: 663 SAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSE 722
S Q+ A A+ ++ ++ E++ +AP + + E
Sbjct: 4 SVQSGS-TANLPADLATALATAKENDGHDFEAPKVGEDQGSPEVTDGPKTEEELL--ALE 60
Query: 723 DEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDE 760
EKPA + P + AAKP K E +
Sbjct: 61 KEKPAEEKPKEDKPAAAKPETPKTVTPEWQTVEKKEQQ 98
Score = 34.9 bits (79), Expect = 0.15
Identities = 20/112 (17%), Positives = 34/112 (30%), Gaps = 11/112 (9%)
Query: 658 PEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDD 717
E + + ++ + E EKPA + P + AA+P K
Sbjct: 32 FEAPKVGEDQGSPEVTDGPKTEEELLALEKEKPAEEKPKEDKPAAAKPETPKTVTPEWQT 91
Query: 718 DSSSEDEKPAVKTPAKPVAQ-----------AAKPAAAKKAESSSDDDSSSE 758
E + K V A KPA +K + D + ++
Sbjct: 92 VEKKEQQGTVTIREEKGVRYNQLSSTAQNDNAGKPALFEKKGLTVDANGNAT 143
Score = 33.8 bits (76), Expect = 0.33
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 707 AAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKA 766
A A+ ++ ++ E++ + P Q + + E EKPA +
Sbjct: 11 ANLPADLATALATAKENDGHDFEAPKVGEDQGSPEVTDGPKTEEELL--ALEKEKPAEEK 68
Query: 767 PAKPVAQAAKP 777
P + AAKP
Sbjct: 69 PKEDKPAAAKP 79
Score = 33.0 bits (74), Expect = 0.67
Identities = 20/111 (18%), Positives = 34/111 (30%), Gaps = 11/111 (9%)
Query: 683 SSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVK----TPAKPVAQA 738
S S PA A A A + + + D S + P + K
Sbjct: 7 SGSTANLPADLATALATAKENDGHDFEAPKVGEDQGSPEVTDGPKTEEELLALEKEKPAE 66
Query: 739 AKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKR 789
KP K A + + + E + V + + G ++ +E R
Sbjct: 67 EKPKEDKPAAAKPETPKTVTPE-------WQTVEKKEQQGTVTIREEKGVR 110
>2i0q_B Telomere-binding protein beta subunit; single strand DNA-protein
complex, structural protein/DNA complex; 1.91A
{Sterkiella nova} SCOP: b.40.4.3
Length = 385
Score = 36.5 bits (83), Expect = 0.040
Identities = 35/155 (22%), Positives = 57/155 (36%), Gaps = 13/155 (8%)
Query: 667 PKPAAAKKAESSSDDDSSSEDE-KPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEK 725
+ ++D ++ + K A A + +AKK +SS+ D S D K
Sbjct: 220 VQEKGKDALNKAADHTDGAKVKGGAKGKGKAAAKAAKGKKLSAKKGDSSAADVRKSVD-K 278
Query: 726 PAVKTPAKPVA-----QAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAK-----PVAQAA 775
TP+K ++ PAA K + + P+ K A +AQ
Sbjct: 279 IVKYTPSKGSRKDTPQKSQAPAAGKSSAKKGGKKAVPSAPSPSGKKSALTTDKMTMAQFV 338
Query: 776 KPGDLSSQEASEKRSPNDFALWKKSKAGEPWWSSP 810
K D ++ K S L K+S AG+ +S
Sbjct: 339 KYLDWHEKKKGGKVSSGGKVLGKRS-AGKASATSG 372
>2jl6_J 50S ribosomal protein L10, 50S ribosomal protein L4; methylation,
translation, paromomycin, tRNA-binding, tRNA, zinc,
mRNA, ribosome, repressor, RNA-binding; 3.45A {Thermus
thermophilus} PDB: 2jl8_J
Length = 130
Score = 32.9 bits (72), Expect = 0.14
Identities = 32/125 (25%), Positives = 54/125 (43%)
Query: 662 ASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSS 721
A+A AAA A +++ +++ A A A A AA AAA A +++ +++
Sbjct: 1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 60
Query: 722 EDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLS 781
A A A AA AAA A +++ +++ A A A A AA +
Sbjct: 61 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 120
Query: 782 SQEAS 786
+ A+
Sbjct: 121 AAAAA 125
Score = 32.9 bits (72), Expect = 0.14
Identities = 32/125 (25%), Positives = 54/125 (43%)
Query: 662 ASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSS 721
A+A AAA A +++ +++ A A A A AA AAA A +++ +++
Sbjct: 2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 61
Query: 722 EDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLS 781
A A A AA AAA A +++ +++ A A A A AA +
Sbjct: 62 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 121
Query: 782 SQEAS 786
+ A+
Sbjct: 122 AAAAA 126
Score = 32.9 bits (72), Expect = 0.14
Identities = 32/125 (25%), Positives = 54/125 (43%)
Query: 662 ASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSS 721
A+A AAA A +++ +++ A A A A AA AAA A +++ +++
Sbjct: 3 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 62
Query: 722 EDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLS 781
A A A AA AAA A +++ +++ A A A A AA +
Sbjct: 63 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 122
Query: 782 SQEAS 786
+ A+
Sbjct: 123 AAAAA 127
Score = 32.9 bits (72), Expect = 0.14
Identities = 32/125 (25%), Positives = 54/125 (43%)
Query: 662 ASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSS 721
A+A AAA A +++ +++ A A A A AA AAA A +++ +++
Sbjct: 4 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 63
Query: 722 EDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLS 781
A A A AA AAA A +++ +++ A A A A AA +
Sbjct: 64 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 123
Query: 782 SQEAS 786
+ A+
Sbjct: 124 AAAAA 128
Score = 32.9 bits (72), Expect = 0.14
Identities = 32/125 (25%), Positives = 54/125 (43%)
Query: 662 ASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSS 721
A+A AAA A +++ +++ A A A A AA AAA A +++ +++
Sbjct: 5 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 64
Query: 722 EDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLS 781
A A A AA AAA A +++ +++ A A A A AA +
Sbjct: 65 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 124
Query: 782 SQEAS 786
+ A+
Sbjct: 125 AAAAA 129
Score = 32.9 bits (72), Expect = 0.14
Identities = 32/125 (25%), Positives = 54/125 (43%)
Query: 662 ASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSS 721
A+A AAA A +++ +++ A A A A AA AAA A +++ +++
Sbjct: 6 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 65
Query: 722 EDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLS 781
A A A AA AAA A +++ +++ A A A A AA +
Sbjct: 66 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 125
Query: 782 SQEAS 786
+ A+
Sbjct: 126 AAAAA 130
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 33.9 bits (78), Expect = 0.18
Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 9/102 (8%)
Query: 611 DSLHGSSITDNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPA 670
D + I LP+ ++ ++VLPP + E E+ A+ A
Sbjct: 145 DHITAGDIK-------LPEGCTLAADPELTVVSVLPPRLT--AEELEAEVQAAQVAGLVA 195
Query: 671 AAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAE 712
A + +E +++ + VKA A + A+
Sbjct: 196 AGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNSDAQ 237
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 34.8 bits (79), Expect = 0.18
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 57 KETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKKI 98
++A E AEAE AE R + E + Q +AQ
Sbjct: 711 AMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALA 752
>2wvr_C DNA replication factor CDT1; DNA replication license, DNA
replication inhibitor, phosphoprotein, UBL conjugation,
DNA-binding, polymorphism; HET: DNA; 3.30A {Homo
sapiens} PDB: 2klo_A*
Length = 546
Score = 33.2 bits (74), Expect = 0.41
Identities = 23/151 (15%), Positives = 42/151 (27%), Gaps = 3/151 (1%)
Query: 666 TPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEK 725
+P + A + S +PA++APA A + A+ + D + +
Sbjct: 12 RRRPGPPRIAPPKLACRTPSP-ARPALRAPAS--ATSGSRKRARPPAAPGRDQARPPARR 68
Query: 726 PAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEA 785
+ + + + A A S +L+S
Sbjct: 69 RLRLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQ 128
Query: 786 SEKRSPNDFALWKKSKAGEPWWSSPWGEGRP 816
+ K S +P EGRP
Sbjct: 129 RARELGARVRALKASAQDAGESCTPEAEGRP 159
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase,
multi-enzyme complex, acylation, oxidative
decarboxylation, maple syrup urine disease; HET: TDP;
1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A*
2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A*
1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A*
1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Length = 400
Score = 33.0 bits (76), Expect = 0.48
Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 9/73 (12%)
Query: 69 LAEAEKAAEKERKKAELAAAQEAKEAQKKIPPSEMFKMETDKYSQFDETVLPPTVLTRVS 128
E ++ A +++ + ++ A E E + K P+ +F +D Y + P L +
Sbjct: 329 WDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLF---SDVYQE------MPAQLRKQQ 379
Query: 129 EYIPEIVASYIEK 141
E + + +Y E
Sbjct: 380 ESLARHLQTYGEH 392
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.51
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Query: 724 EKPAVK---TPAKPVAQAAKPAAAKKA 747
EK A+K K A + PA A KA
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKA 44
Score = 31.8 bits (71), Expect = 0.52
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 688 EKPAVK---APAKPVAHAAEPAAAKKA 711
EK A+K A K A + PA A KA
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKA 44
Score = 29.1 bits (64), Expect = 4.3
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 10/27 (37%)
Query: 673 KKAESS---SDDDSSSEDEKP--AVKA 694
KK ++S DDS+ P A+KA
Sbjct: 23 KKLQASLKLYADDSA-----PALAIKA 44
Score = 29.1 bits (64), Expect = 4.3
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 10/27 (37%)
Query: 745 KKAESS---SDDDSSSEDEKP--AVKA 766
KK ++S DDS+ P A+KA
Sbjct: 23 KKLQASLKLYADDSA-----PALAIKA 44
Score = 28.0 bits (61), Expect = 9.4
Identities = 8/25 (32%), Positives = 10/25 (40%), Gaps = 7/25 (28%)
Query: 651 TRVSEYIPEIVASAQTPKPAAAKKA 675
+ Y + SA PA A KA
Sbjct: 27 ASLKLYADD---SA----PALAIKA 44
>1div_A Ribosomal protein L9; rRNA-binding; 2.60A {Geobacillus
stearothermophilus} SCOP: d.99.1.1 d.100.1.1 PDB:
1giy_K 1yl3_K 2b66_I 2b9n_I 2b9p_I 487d_K
Length = 149
Score = 31.4 bits (72), Expect = 0.59
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 60 LAKE--KEAKRLAEAEKAAEKERKKAELAAAQEAKEA 94
LA E + EA+K E+ + ELA A++ KE
Sbjct: 35 LAIEATPANLKALEAQKQKEQRQAAEELANAKKLKEQ 71
>3v2d_I 50S ribosomal protein L9; ribosome associated inhibitor A, RAIA,
protein Y, stress RES stationary phase, ribosome
hibernation, ribosome; 2.70A {Thermus thermophilus}
PDB: 2j03_I 2jl6_I 2jl8_I 2v47_I 2v49_I 2wdi_I 2wdj_I
2wdl_I 2wdn_I 2wh2_I 2x9s_I 2x9u_I 2xg0_I 2xg2_I 3hux_I
3huz_I 3i8f_K 3i8i_K 3i9c_K 3i9e_K ...
Length = 148
Score = 31.4 bits (72), Expect = 0.70
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 60 LAKE--KEAKRLAEAEKAAEKERKKAELAAAQEAKEA 94
LA + + EA A+ +R A A+ KE
Sbjct: 35 LAVLATESNLKALEARIRAQAKRLAERKAEAERLKEI 71
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 421
Score = 32.5 bits (73), Expect = 0.71
Identities = 22/115 (19%), Positives = 39/115 (33%), Gaps = 18/115 (15%)
Query: 649 VLTRVSEYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAA 708
++ +++ Y + + + K KA A A + E
Sbjct: 324 IMLKLNPYAKTMRRNTILRQAKNHKLRMD---------------KAAAALEAKSEEKGVP 368
Query: 709 KKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPA 763
K + +KP K A KPAA KK ++ ++E++KPA
Sbjct: 369 GKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKP---AEKKPTTEEKKPA 420
Score = 31.0 bits (69), Expect = 2.3
Identities = 20/109 (18%), Positives = 34/109 (31%), Gaps = 3/109 (2%)
Query: 667 PKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKP 726
K + + + + AK + AAA S + + +
Sbjct: 315 KKNPLKNLRIMLKLNPYAKTMRRNTILRQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRR 374
Query: 727 AVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAA 775
V + KP KKA ++ + D+KPA K P + A
Sbjct: 375 KKGKKTVGVKKPKKPVVGKKAAATKKP---AADKKPAEKKPTTEEKKPA 420
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex,
inter-protein beta sheet, protein-protein, metal
transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A
{Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A
Length = 229
Score = 32.0 bits (72), Expect = 0.79
Identities = 20/88 (22%), Positives = 27/88 (30%)
Query: 657 IPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSD 716
+ P+P E + E KP K KPV E S
Sbjct: 51 VQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESR 110
Query: 717 DDSSSEDEKPAVKTPAKPVAQAAKPAAA 744
S E+ PA T + A +KP +
Sbjct: 111 PASPFENTAPARLTSSTATAATSKPVTS 138
Score = 30.1 bits (67), Expect = 3.3
Identities = 16/109 (14%), Positives = 28/109 (25%)
Query: 684 SSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAA 743
S + + APA+P++ A + + E P + A
Sbjct: 20 MSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVI 79
Query: 744 AKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRSPN 792
K + + K KPV ++ A S
Sbjct: 80 EKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTA 128
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein
biosynthesis, ligase, aminoacyl- synthetase; HET: ADN
CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Length = 524
Score = 32.2 bits (74), Expect = 0.82
Identities = 12/59 (20%), Positives = 17/59 (28%), Gaps = 1/59 (1%)
Query: 275 KFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYL 333
K V ++T D L V D AL++I + N Y
Sbjct: 379 KNLGAAVPDPGEFTDEDTALLAAADALLERVREHF-DVPAMHLALEAIWSVLGAANRYF 436
>3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs,
parasite, protein-IN complex, translation, nucleotide
binding; HET: C13; 2.55A {Trypanosoma brucei}
Length = 542
Score = 32.3 bits (73), Expect = 0.87
Identities = 9/59 (15%), Positives = 18/59 (30%), Gaps = 1/59 (1%)
Query: 275 KFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYL 333
S +T+ D L D + A+ ++ D + +N Y+
Sbjct: 391 INVNGEWPSPAAYTEEDESLIQLIKDLPGTADHYY-LIPDIQKAIIAVFDVLRAINAYV 448
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase,
multienzyme complex, oxidoreductase; HET: TDP; 2.0A
{Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB:
3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Length = 368
Score = 31.8 bits (73), Expect = 0.90
Identities = 7/42 (16%), Positives = 17/42 (40%)
Query: 64 KEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKKIPPSEMFK 105
+ +E E+ E+ K E+ A + + K +++
Sbjct: 304 EAKGLWSEEEENNVIEQAKEEIKEAIKKADETPKQKVTDLIS 345
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP
cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas
putida} SCOP: c.36.1.11 PDB: 2bp7_A
Length = 407
Score = 32.0 bits (73), Expect = 0.91
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 54 LVDKETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKKIPPSEMFK 105
L+ ++E+ AE E A +K+AE + MF+
Sbjct: 342 LIKIGHWSEEEHQATTAEFEAAVIAAQKEAEQYGTLANGHIP---SAASMFE 390
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2)
tetramer, structural genomics; HET: TDP; 1.90A {Thermus
thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A*
1umb_A*
Length = 367
Score = 31.8 bits (73), Expect = 0.95
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 64 KEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKKIPPSEMFK 105
+ E + +E +AEL + E +PP MF+
Sbjct: 305 EARGLWNEEWEEDVREEIRAELERGLKEAEEAGPVPPEWMFE 346
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania
major}
Length = 467
Score = 32.0 bits (72), Expect = 1.1
Identities = 19/140 (13%), Positives = 42/140 (30%), Gaps = 3/140 (2%)
Query: 614 HGSSITDNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAAK 673
H S + + + + + L P+ L + +A+
Sbjct: 10 HSSGLVPRGSHMASKRCRQCSGDSASSSTSSLSPSELPPSKKAAGGQRVTAEVEVAPITT 69
Query: 674 KAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAK 733
A S++ + +K +PA+ + AA+ E ++ + K K
Sbjct: 70 DATSATVTAAGGAKKKATTGSPARRTSSAAKITNGDAGELIRTAEALAA---LNAKKSEK 126
Query: 734 PVAQAAKPAAAKKAESSSDD 753
+ P + +S D
Sbjct: 127 EIWSDVVPFVRRTTDSDFDP 146
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class
IA:methionyl-tRNA...; structural genomics; 2.65A
{Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Length = 536
Score = 31.9 bits (73), Expect = 1.1
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 280 TVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYL 333
V +++AD + + A+ D+ AL +I +++ N Y
Sbjct: 395 KVPQPGAFSEADKAILDQADAALETARKAM-DDQALHLALGAIFAVVAEANRYF 447
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase,
tRNA ligase metrs, methionine, translation, ATP-binding;
HET: ME8; 2.00A {Leishmania major}
Length = 564
Score = 31.9 bits (73), Expect = 1.1
Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 1/59 (1%)
Query: 275 KFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYL 333
+++++D L V D + AL +I D + +N Y+
Sbjct: 407 INVNGMWPEPAEYSESDKTLIASLNNLAGTVDHYY-CLPDIQHALIAIFDVLRSLNAYV 464
>2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP:
b.71.1.1 c.1.8.1
Length = 484
Score = 31.6 bits (72), Expect = 1.3
Identities = 16/53 (30%), Positives = 20/53 (37%)
Query: 557 DPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDW 609
DPF ITD + WE + + DL+ TAVR DW
Sbjct: 138 DPFDSSSYFHPYCLITDWDNLTMVEDCWEGDTIVSLPDLDTTETAVRTIWYDW 190
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 31.7 bits (72), Expect = 1.3
Identities = 14/152 (9%), Positives = 34/152 (22%), Gaps = 26/152 (17%)
Query: 57 KETLAKEKEAKRLAEAEK---AAEKERKKAELAAAQEAKEAQKKIPPSEMFKMETDKYSQ 113
K+T K+ + K + + + + + ++++
Sbjct: 628 KDTWGKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKAQPLTPEQDAEFTR 687
Query: 114 FDETVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPNHYYAKL 173
+ A +A + + A +
Sbjct: 688 LLGLGAS--------------------EGDARTIARDPALLAFVGGAAPGDTFAQVASWT 727
Query: 174 VPEAYGDTKTLQEGEVRGYPPWPARIEGLADE 205
V E L+ GEV+ A +
Sbjct: 728 VNELVAG---LRAGEVKVRAADLAPLAEGVAS 756
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_T 4a1c_T 4a1e_T
Length = 158
Score = 30.5 bits (68), Expect = 1.4
Identities = 7/40 (17%), Positives = 18/40 (45%)
Query: 61 AKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKKIPP 100
K+K+A + + + + K + A E K+ ++ +
Sbjct: 114 LKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQPVGA 153
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase;
HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis}
SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A*
1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Length = 448
Score = 31.6 bits (71), Expect = 1.4
Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 3/81 (3%)
Query: 558 PFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLDSLHGSS 617
P D H S +NS + + +ADL+ V++ ++ +++ L
Sbjct: 109 PIYSPQD-FHESCTINNSDYGNDRYRVQNCELVGLADLDTASNYVQNTIAAYINDLQAIG 167
Query: 618 ITDNSIFATLPKHWEAEFHKD 638
+ A KH A +
Sbjct: 168 VKGFRFDA--SKHVAASDIQS 186
>2v1o_A Cytosolic acyl coenzyme A thioester hydrolase; acyl-COA
thioesterase 7, serine esterase, protein structure,
domain duplication, ACOT7, macrophage; HET: COA; 1.78A
{Mus musculus}
Length = 151
Score = 30.0 bits (68), Expect = 1.6
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 47 GRPSAVKLVDKETLAKEKEAKRLAEAEKAAEKERK 81
+ V + +E+E ++ EA+K E K
Sbjct: 117 DKVLEVPPIVYLRQEQEEEGRKRYEAQKLERMETK 151
>1nkw_F 50S ribosomal protein L9; ribosome, large subunit, X- RAY
structure, peptidyl-transferase, peptide bond
formation; 3.10A {Deinococcus radiodurans} SCOP:
i.1.1.2 PDB: 1nwx_F* 1nwy_F* 1sm1_F* 1xbp_F* 1pnu_F
1pny_F 1vor_I 1vou_I 1vow_I 1voy_I 1vp0_I
Length = 146
Score = 30.2 bits (69), Expect = 1.6
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 60 LAKE--KEAKRLAEAEKAAEKERKKAELAAAQEAKEA 94
LA + + EA+ + ++R+ E A A++
Sbjct: 34 LAVSATRTNMKTLEAQLRSIEKRQAQEKAVAEDLASR 70
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA
replication, phosphoprotein; 2.14A {Streptomyces
coelicolor}
Length = 199
Score = 30.3 bits (68), Expect = 2.2
Identities = 10/100 (10%), Positives = 20/100 (20%), Gaps = 1/100 (1%)
Query: 656 YIPEIVASAQTPK-PAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESS 714
+ E+ +A K +S + P ++ +
Sbjct: 97 TVYELDVDEVGASLRSATAKVTKTSGQGRGGQGGYGGGGGGQGGGGWGGGPGGGQQGGGA 156
Query: 715 SDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDD 754
DD + PA D+
Sbjct: 157 PADDPWATGGAPAGGQQGGGGQGGGGWGGGSGGGGGYSDE 196
>3r8s_H 50S ribosomal protein L9; protein biosynthesis, RNA, tRNA,
transfer RNA, 23S ribosomal subunit, ribosome recycling
factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
1p85_F 1p86_F 1vs8_H 1vs6_H 2aw4_H 2awb_H 2gya_F 2gyc_F
1vt2_H 2i2v_H 2j28_H 2i2t_H* 2qao_H* 2qba_H* 2qbc_H*
2qbe_H 2qbg_H 2qbi_H* 2qbk_H* 2qov_H ...
Length = 149
Score = 29.9 bits (68), Expect = 2.2
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 64 KEAKRLAEAEKAAEKERKKAELAAAQEAKEA 94
K+ EA +A + + LAAA E
Sbjct: 41 KKNIEFFEARRAELEAKLAEVLAAANARAEK 71
>2jtx_A Transcription initiation factor IIE subunit alpha; TFIIE, TFIIH,
activation domains, transcription regulation; NMR {Homo
sapiens} PDB: 2rnq_A 2rnr_A
Length = 106
Score = 28.8 bits (63), Expect = 2.5
Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 9/79 (11%)
Query: 694 APAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDD 753
+ A V AA AA +S S+ S +D P A ++ + DD
Sbjct: 2 SMAGSVGAAAPVTAANGDDSESETSESDDDSPPRPAAVA---------VHKREEDEEEDD 52
Query: 754 DSSSEDEKPAVKAPAKPVA 772
+ + P V +P +
Sbjct: 53 EFEEVADDPIVMVAGRPFS 71
>1cgh_A Cathepsin G; inflammation, specificity, serine protease,
hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A*
1kyn_A*
Length = 224
Score = 30.2 bits (69), Expect = 2.6
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 5/27 (18%)
Query: 119 LPPTVLTRVSEYIPEIVASYIEKIIAN 145
+PP V TRVS ++P +I + +
Sbjct: 203 VPPEVFTRVSSFLP-----WIRTTMRS 224
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics,
NPPSFA, national project on P structural and functional
analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1
PDB: 2dma_A 4dt0_A
Length = 198
Score = 30.0 bits (67), Expect = 3.0
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 61 AKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKK 97
A+ K L EA + AEK +++A A +A+ ++
Sbjct: 15 AERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRR 51
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus}
PDB: 2ct8_A*
Length = 497
Score = 30.3 bits (69), Expect = 3.1
Identities = 8/46 (17%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 288 TQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYL 333
D E + ++ N + + ++ A++ I S +N Y+
Sbjct: 372 GARDEEYAKIAQESIKNYENYM-EKVNFYKAIEEILKFTSYLNKYV 416
>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein
complex, RNA-RNA complex, PROT complex, peptidyl
transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS;
2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB:
1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I*
1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I*
1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...
Length = 348
Score = 30.2 bits (67), Expect = 3.4
Identities = 9/62 (14%), Positives = 22/62 (35%)
Query: 732 AKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRSP 791
+K AQ A+ E + ++ + A + P D + + + + +
Sbjct: 272 SKADAQVRALASQIDDEEALPEELQGVEADVATEEPTDDQDDDTASEDDADADDAAEEAD 331
Query: 792 ND 793
+D
Sbjct: 332 DD 333
>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A*
4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A*
2hvx_A* 3s0n_A* 2rdl_A
Length = 226
Score = 29.8 bits (68), Expect = 3.4
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 5/26 (19%)
Query: 120 PPTVLTRVSEYIPEIVASYIEKIIAN 145
PP V TR+S Y P +I +I+
Sbjct: 205 PPAVFTRISHYRP-----WINQILQA 225
>1h8l_A Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent
protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta
specularioides} SCOP: b.3.2.1 c.56.5.1 PDB: 1qmu_A*
Length = 380
Score = 29.8 bits (67), Expect = 4.1
Identities = 13/77 (16%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 807 WSSPWGEGRPGWHIECSVMASAVLGPQ----LDIHTGGVDLKFPHHDNELAQAEGLPTHD 862
+ + + E + S + ++H G + + +P D+E A + D
Sbjct: 144 FPDQFFQVTDPPQPETLAVMSWLKTYPFVLSANLHGGSLVVNYPFDDDEQGIAIYSKSPD 203
Query: 863 -QEGKELSKGLAKKLKK 878
++L+ +K+ KK
Sbjct: 204 DAVFQQLALSYSKENKK 220
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 30.1 bits (68), Expect = 4.6
Identities = 10/65 (15%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 53 KLVDKETLAKEKEAKRLAEAEKAAEK-ERKKAELAAAQEAKEAQKKIPPSEMFKMETDKY 111
+ +E + EA+ + +K E K +L + + + K +M +E
Sbjct: 900 MMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYS 959
Query: 112 SQFDE 116
++ ++
Sbjct: 960 TETEK 964
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A
{Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Length = 722
Score = 30.1 bits (68), Expect = 4.8
Identities = 13/66 (19%), Positives = 19/66 (28%), Gaps = 5/66 (7%)
Query: 272 RNLKFPAT----TVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCIS 327
R L F V + + D E + V + N + AL + S
Sbjct: 406 RALTFVNRYFDGVVPERGELDELDREALEEIEKAFKEVGELI-MNYRFKDALKRVMSLAS 464
Query: 328 QVNIYL 333
N Y
Sbjct: 465 FGNRYF 470
>1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism,
4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio
molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A
1viw_A*
Length = 471
Score = 29.7 bits (66), Expect = 5.0
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 591 DMADLNKLLTAVRDPLSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMAD 641
+ DLN+ VR L D+++ + + + A KH +
Sbjct: 152 GLRDLNQGSDYVRGVLIDYMNHMIDLGVAGFRVDAA--KHMSPGDLSVIFS 200
>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease,
zymogen; 2.50A {Mus musculus} PDB: 3g01_A
Length = 227
Score = 29.0 bits (66), Expect = 5.3
Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 5/26 (19%)
Query: 120 PPTVLTRVSEYIPEIVASYIEKIIAN 145
P V TRV ++ +I+K + +
Sbjct: 207 APQVFTRVLSFVS-----WIKKTMKH 227
>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5g_H
Length = 190
Score = 29.3 bits (65), Expect = 5.4
Identities = 0/36 (0%), Positives = 5/36 (13%)
Query: 62 KEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKK 97
+ + + + +
Sbjct: 115 SRTLTAVHDKILEDLVFPTEIVGKRVRYLVGGNKIQ 150
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right
handed coiled-coil, ATPase/SY ATP binding, membrane,
hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E
3j0j_J
Length = 187
Score = 28.7 bits (64), Expect = 6.4
Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 53 KLVDKETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKKI 98
++ +E + + L EAE AE +++AE A + ++ +
Sbjct: 5 AILSQE--VEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERAL 48
>1a7s_A Heparin binding protein; serine protease homolog, endotoxin
binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2
PDB: 1ae5_A* 1fy3_A* 1fy1_A*
Length = 225
Score = 28.7 bits (65), Expect = 7.7
Identities = 6/26 (23%), Positives = 12/26 (46%), Gaps = 5/26 (19%)
Query: 120 PPTVLTRVSEYIPEIVASYIEKIIAN 145
P TRV+ + +I+ ++ N
Sbjct: 199 GPDFFTRVALFRD-----WIDGVLNN 219
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 297
Score = 28.9 bits (64), Expect = 7.9
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 49 PSAVKLVDKETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEA 91
P K KE K +++ A+K +KKA AQE
Sbjct: 251 PVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQER 293
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 29.0 bits (64), Expect = 9.4
Identities = 22/123 (17%), Positives = 32/123 (26%), Gaps = 25/123 (20%)
Query: 658 PEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDD 717
+V + + AA+ P V P PAA ++ + D
Sbjct: 19 SHMVIPSASVTSAAS----------DFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGD 68
Query: 718 DSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKP 777
++ P P + PA P A A P A A P
Sbjct: 69 SVLQ----RILRGPTGPGTTSLAPAV-----------RYGRQPGPEAPASAPPAAGRAVP 113
Query: 778 GDL 780
G
Sbjct: 114 GLY 116
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.130 0.371
Gapped
Lambda K H
0.267 0.0436 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,014,054
Number of extensions: 863697
Number of successful extensions: 2171
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1965
Number of HSP's successfully gapped: 144
Length of query: 948
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 845
Effective length of database: 3,825,930
Effective search space: 3232910850
Effective search space used: 3232910850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.4 bits)