BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy6853
         (154 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3DWB|A Chain A, Structure Of Human Ece-1 Complexed With Phosphoramidon
          Length = 670

 Score = 29.3 bits (64), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 81  IVKISKIGSGAPSREPVMNEEEKKQLMLHYYRKQEEM-KLLESDTDEAFR 129
           ++++ + G G PSR+  +N+ E ++++  Y     ++ KLL    +EA R
Sbjct: 152 VIQVDQSGLGLPSRDYYLNKTENEKVLTGYLNYMVQLGKLLGGGDEEAIR 201


>pdb|4A0M|A Chain A, Crystal Structure Of Betaine Aldehyde Dehydrogenase From
           Spinach In Complex With Nad
 pdb|4A0M|B Chain B, Crystal Structure Of Betaine Aldehyde Dehydrogenase From
           Spinach In Complex With Nad
 pdb|4A0M|C Chain C, Crystal Structure Of Betaine Aldehyde Dehydrogenase From
           Spinach In Complex With Nad
 pdb|4A0M|D Chain D, Crystal Structure Of Betaine Aldehyde Dehydrogenase From
           Spinach In Complex With Nad
          Length = 496

 Score = 28.9 bits (63), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 56  WFAGKAMHRDKFVRDFLGK-NEKCKAIVKISKIGSGAPSREPVMNEEEKKQLMLHYYRKQ 114
           W A    HR  ++R    K  EK    VK+  I SG P  E V++ ++       Y+  Q
Sbjct: 63  WSATSGAHRATYLRAIAAKITEKKDHFVKLETIDSGKPFDEAVLDIDDVASC-FEYFAGQ 121

Query: 115 EE 116
            E
Sbjct: 122 AE 123


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.134    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,787,476
Number of Sequences: 62578
Number of extensions: 182362
Number of successful extensions: 467
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 464
Number of HSP's gapped (non-prelim): 7
length of query: 154
length of database: 14,973,337
effective HSP length: 90
effective length of query: 64
effective length of database: 9,341,317
effective search space: 597844288
effective search space used: 597844288
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)