Query psy6853
Match_columns 154
No_of_seqs 96 out of 98
Neff 3.6
Searched_HMMs 46136
Date Fri Aug 16 20:05:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6853.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6853hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11069 DUF2870: Protein of u 100.0 8.9E-61 1.9E-65 356.2 8.3 98 52-149 1-98 (98)
2 cd01800 SF3a120_C Ubiquitin-li 94.5 0.034 7.5E-07 38.2 2.6 66 17-90 9-74 (76)
3 cd01793 Fubi Fubi ubiquitin-li 91.7 0.11 2.4E-06 35.3 1.6 59 21-87 14-72 (74)
4 PTZ00044 ubiquitin; Provisiona 91.6 0.14 3.1E-06 34.4 2.2 59 21-88 16-75 (76)
5 PF00240 ubiquitin: Ubiquitin 89.1 0.14 2.9E-06 33.7 0.3 62 17-86 7-68 (69)
6 KOG0004|consensus 89.0 0.2 4.4E-06 40.7 1.3 41 44-84 32-73 (156)
7 cd01807 GDX_N ubiquitin-like d 89.0 0.2 4.2E-06 34.0 1.1 38 43-81 31-68 (74)
8 cd01810 ISG15_repeat2 ISG15 ub 87.8 0.7 1.5E-05 31.3 3.2 39 48-87 34-72 (74)
9 cd01796 DDI1_N DNA damage indu 87.0 0.25 5.4E-06 33.6 0.6 35 47-82 34-69 (71)
10 cd01803 Ubiquitin Ubiquitin. U 86.9 0.72 1.6E-05 30.5 2.8 60 21-88 16-75 (76)
11 cd01802 AN1_N ubiquitin-like d 86.6 0.42 9.2E-06 35.3 1.7 42 45-88 60-102 (103)
12 cd01794 DC_UbP_C dendritic cel 86.5 0.48 1E-05 32.5 1.8 28 44-71 30-57 (70)
13 cd01812 BAG1_N Ubiquitin-like 85.8 0.61 1.3E-05 30.6 2.0 56 18-81 12-67 (71)
14 cd01808 hPLIC_N Ubiquitin-like 85.6 0.73 1.6E-05 30.9 2.3 34 48-82 35-68 (71)
15 cd01806 Nedd8 Nebb8-like ubiq 85.5 0.94 2E-05 29.9 2.8 56 21-83 16-72 (76)
16 cd01797 NIRF_N amino-terminal 85.4 0.72 1.6E-05 32.2 2.3 37 47-84 37-73 (78)
17 cd01798 parkin_N amino-termina 84.3 0.44 9.5E-06 31.8 0.8 45 20-71 13-57 (70)
18 cd01805 RAD23_N Ubiquitin-like 82.2 0.62 1.3E-05 31.2 0.8 36 49-85 39-74 (77)
19 cd01763 Sumo Small ubiquitin-r 79.8 2.7 5.8E-05 29.6 3.5 59 22-88 28-86 (87)
20 smart00213 UBQ Ubiquitin homol 79.5 0.84 1.8E-05 28.7 0.7 48 17-71 11-58 (64)
21 cd01809 Scythe_N Ubiquitin-lik 79.0 1.2 2.6E-05 29.1 1.4 24 48-71 36-59 (72)
22 TIGR00601 rad23 UV excision re 77.3 2.5 5.5E-05 38.1 3.3 65 18-87 13-77 (378)
23 cd01813 UBP_N UBP ubiquitin pr 71.0 1.7 3.8E-05 30.0 0.6 57 18-82 12-71 (74)
24 cd01792 ISG15_repeat1 ISG15 ub 70.8 1 2.2E-05 31.1 -0.7 37 48-85 38-76 (80)
25 cd01804 midnolin_N Ubiquitin-l 62.5 12 0.00025 25.8 3.4 38 48-87 37-74 (78)
26 cd01769 UBL Ubiquitin-like dom 60.0 14 0.0003 23.3 3.2 36 48-84 33-68 (69)
27 PF11976 Rad60-SLD: Ubiquitin- 51.8 9.6 0.00021 25.1 1.5 48 22-76 17-66 (72)
28 cd01795 USP48_C USP ubiquitin- 48.9 48 0.001 25.7 5.0 43 48-100 40-83 (107)
29 cd01791 Ubl5 UBL5 ubiquitin-li 47.3 13 0.00028 25.8 1.6 53 21-81 17-69 (73)
30 KOG0005|consensus 43.1 8.6 0.00019 27.5 0.2 26 46-71 34-59 (70)
31 cd01815 BMSC_UbP_N Ubiquitin-l 40.1 33 0.00072 24.6 2.8 28 48-75 39-67 (75)
32 cd06395 PB1_Map2k5 PB1 domain 38.6 25 0.00054 26.4 2.0 20 99-118 58-77 (91)
33 KOG0003|consensus 35.8 6.6 0.00014 31.0 -1.5 40 45-84 33-73 (128)
34 cd04821 PA_M28_1_2 PA_M28_1_2: 34.4 1E+02 0.0022 24.6 5.0 41 46-86 17-58 (157)
35 smart00563 PlsC Phosphate acyl 28.4 49 0.0011 22.3 2.0 20 3-22 65-85 (118)
36 smart00700 JHBP Juvenile hormo 28.0 30 0.00066 27.7 1.1 28 3-30 19-47 (225)
37 cd01799 Hoil1_N Ubiquitin-like 28.0 20 0.00044 24.9 0.1 28 47-75 37-66 (75)
38 PF03711 OKR_DC_1_C: Orn/Lys/A 27.4 22 0.00047 27.9 0.1 26 2-27 69-94 (136)
39 cd02988 Phd_like_VIAF Phosduci 27.0 83 0.0018 25.4 3.4 18 91-108 13-30 (192)
40 cd01814 NTGP5 Ubiquitin-like N 25.8 35 0.00076 26.5 1.0 23 50-72 50-72 (113)
41 COG1451 Predicted metal-depend 25.5 60 0.0013 27.2 2.4 87 11-114 30-120 (223)
42 PF09776 Mitoc_L55: Mitochondr 25.1 39 0.00085 26.4 1.2 18 97-114 76-93 (116)
43 KOG0599|consensus 23.9 1.7E+02 0.0036 27.1 5.0 78 59-137 170-256 (411)
44 PF10783 DUF2599: Protein of u 23.5 44 0.00095 24.9 1.1 14 131-144 46-59 (93)
45 PF06589 CRA: Circumsporozoite 23.3 88 0.0019 25.5 2.9 26 95-123 44-69 (157)
46 PF09660 DUF2397: Protein of u 23.1 1.5E+02 0.0032 27.6 4.7 43 56-114 355-399 (486)
47 PF09130 DUF1932: Domain of un 22.7 88 0.0019 21.4 2.5 19 104-122 31-49 (73)
No 1
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=100.00 E-value=8.9e-61 Score=356.21 Aligned_cols=98 Identities=51% Similarity=0.919 Sum_probs=97.0
Q ss_pred ceeEeeecccccccchhhhhcCCCccceEEEEecccCCCCCCCCCCCCHHHHHHHHHHHHHhHHHHhhhhhccccccccc
Q psy6853 52 MGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGSGAPSREPVMNEEEKKQLMLHYYRKQEEMKLLESDTDEAFRNS 131 (154)
Q Consensus 52 ~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g~GaP~REp~isee~qk~mMa~yykrQEElKkleedddd~ylnS 131 (154)
+||||||||+|.+|++|+||||+||||||||||+++|+|||+|||+||+|+||+||+||||||||||+||+||||+||||
T Consensus 1 ~a~LW~aGK~l~~~k~l~dy~GkNEKtKiivKl~~~g~g~P~REp~isee~qk~mm~~~~rrqEElKkLee~ddd~ylns 80 (98)
T PF11069_consen 1 EAQLWWAGKELQRGKKLSDYIGKNEKTKIIVKLQKRGQGPPPREPVISEEEQKAMMAYYYRRQEELKKLEEDDDDSYLNS 80 (98)
T ss_pred CceEEeccccccCCCcHHHhcCCCcceeEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCchhHHHhhcCCccc
Q psy6853 132 DWADNTSLRKNLLGLNRI 149 (154)
Q Consensus 132 ~WAd~~~LK~q~~Gl~~I 149 (154)
+||||++||+||||++||
T Consensus 81 ~Wad~~~Lk~~~~G~~~I 98 (98)
T PF11069_consen 81 QWADPKALKRQFHGLENI 98 (98)
T ss_pred hccChHHHHHHhcccccC
Confidence 999999999999999998
No 2
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=94.47 E-value=0.034 Score=38.18 Aligned_cols=66 Identities=12% Similarity=0.196 Sum_probs=46.1
Q ss_pred eecCCCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccCCC
Q psy6853 17 VYPMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGSG 90 (154)
Q Consensus 17 vyPmgLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g~G 90 (154)
+|+..+++.+.|...=+--+...| ++++.-.|++.|+.|..+.+|++| |-.+-..|.|=+..+|.+
T Consensus 9 ~~~l~v~~~~TV~~lK~~i~~~~g-------ip~~~q~L~~~G~~L~d~~tL~~~-~i~~g~~l~v~~~~~gg~ 74 (76)
T cd01800 9 MLNFTLQLSDPVSVLKVKIHEETG-------MPAGKQKLQYEGIFIKDSNSLAYY-NLANGTIIHLQLKERGGR 74 (76)
T ss_pred EEEEEECCCCcHHHHHHHHHHHHC-------CCHHHEEEEECCEEcCCCCcHHHc-CCCCCCEEEEEEecCCCc
Confidence 355667777877643333333333 478889999999999999999988 455556677767666644
No 3
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=91.66 E-value=0.11 Score=35.33 Aligned_cols=59 Identities=20% Similarity=0.284 Sum_probs=38.5
Q ss_pred CCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhhcCCCccceEEEEeccc
Q psy6853 21 NLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKI 87 (154)
Q Consensus 21 gLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~ 87 (154)
.+.|.|-|. ++...-+..+-++++.-.|+|+||.|..+.+|++| |-++.+.|-+=+.-+
T Consensus 14 ~v~~~~tV~-------~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~-~i~~~~tl~l~~~l~ 72 (74)
T cd01793 14 EVTGQETVS-------DIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQC-GVEELCTLEVAGRLL 72 (74)
T ss_pred EECCcCcHH-------HHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHc-CCCCCCEEEEEEecC
Confidence 445556553 33322233344688889999999999999999997 555555555444433
No 4
>PTZ00044 ubiquitin; Provisional
Probab=91.61 E-value=0.14 Score=34.35 Aligned_cols=59 Identities=19% Similarity=0.220 Sum_probs=37.6
Q ss_pred CCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhh-cCCCccceEEEEecccC
Q psy6853 21 NLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDF-LGKNEKCKAIVKISKIG 88 (154)
Q Consensus 21 gLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dY-iGkNEKTKiivKl~k~g 88 (154)
.+.+.+.|.-.-.--+ ...-++++...|+|+|+.|..+.+|++| +..+ ..|.+=+..+|
T Consensus 16 ~v~~~~tv~~lK~~i~-------~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~--~~i~l~~~~~g 75 (76)
T PTZ00044 16 NFEPDNTVQQVKMALQ-------EKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPG--STIHMVLQLRG 75 (76)
T ss_pred EECCCCcHHHHHHHHH-------HHHCCCHHHeEEEECCEEccCCCcHHHcCCCCC--CEEEEEEEccC
Confidence 4556676643222222 2334588899999999999999999999 4444 34444444443
No 5
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=89.11 E-value=0.14 Score=33.68 Aligned_cols=62 Identities=23% Similarity=0.417 Sum_probs=41.6
Q ss_pred eecCCCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhhcCCCccceEEEEecc
Q psy6853 17 VYPMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISK 86 (154)
Q Consensus 17 vyPmgLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k 86 (154)
.|+..+++.+.|. +|...-+...-++++...|-|.|+.|..+.+|++| |-.+-+.|++-+.+
T Consensus 7 ~~~~~v~~~~tV~-------~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~-~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 7 TFTLEVDPDDTVA-------DLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDY-GIKDGSTIHLVIKP 68 (69)
T ss_dssp EEEEEEETTSBHH-------HHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGG-TTSTTEEEEEEESS
T ss_pred EEEEEECCCCCHH-------HhhhhcccccccccccceeeeeeecccCcCcHHHc-CCCCCCEEEEEEec
Confidence 3445555666664 22222222333788999999999999999999999 55555577776654
No 6
>KOG0004|consensus
Probab=89.02 E-value=0.2 Score=40.74 Aligned_cols=41 Identities=27% Similarity=0.518 Sum_probs=35.5
Q ss_pred ccccccCCceeEeeecccccccchhhhh-cCCCccceEEEEe
Q psy6853 44 SKEVIEPSMGALWFAGKAMHRDKFVRDF-LGKNEKCKAIVKI 84 (154)
Q Consensus 44 ~~evi~~~~a~LW~aGKel~r~k~l~dY-iGkNEKTKiivKl 84 (154)
..|-|.++.-.|-|||++|..|.+|||| |++-.--.+++-|
T Consensus 32 ~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l 73 (156)
T KOG0004|consen 32 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (156)
T ss_pred cccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEe
Confidence 4677999999999999999999999999 7777766777665
No 7
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=89.00 E-value=0.2 Score=33.99 Aligned_cols=38 Identities=24% Similarity=0.310 Sum_probs=28.4
Q ss_pred cccccccCCceeEeeecccccccchhhhhcCCCccceEE
Q psy6853 43 ASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAI 81 (154)
Q Consensus 43 a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKii 81 (154)
+...-++++.-.|+|.||+|..+.+|++| |-.+.+.|.
T Consensus 31 ~~~~gi~~~~q~L~~~G~~L~d~~~L~~~-~i~~~~~l~ 68 (74)
T cd01807 31 SEHLNVPEEQQRLLFKGKALADDKRLSDY-SIGPNAKLN 68 (74)
T ss_pred HHHHCCCHHHeEEEECCEECCCCCCHHHC-CCCCCCEEE
Confidence 33445688889999999999999999999 333333443
No 8
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=87.83 E-value=0.7 Score=31.32 Aligned_cols=39 Identities=15% Similarity=0.364 Sum_probs=30.3
Q ss_pred ccCCceeEeeecccccccchhhhhcCCCccceEEEEeccc
Q psy6853 48 IEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKI 87 (154)
Q Consensus 48 i~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~ 87 (154)
|+++.-.|+++||.|..+.+|++| |-.+.+.+.+=+.-+
T Consensus 34 i~~~~q~L~~~G~~L~D~~tL~~~-~i~~~~tl~l~~~l~ 72 (74)
T cd01810 34 VQADQFWLSFEGRPMEDEHPLGEY-GLKPGCTVFMNLRLR 72 (74)
T ss_pred CCHHHeEEEECCEECCCCCCHHHc-CCCCCCEEEEEEEcc
Confidence 578888999999999999999997 655555565544433
No 9
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=87.01 E-value=0.25 Score=33.63 Aligned_cols=35 Identities=14% Similarity=0.320 Sum_probs=27.7
Q ss_pred cccCCceeEeeeccccccc-chhhhhcCCCccceEEE
Q psy6853 47 VIEPSMGALWFAGKAMHRD-KFVRDFLGKNEKCKAIV 82 (154)
Q Consensus 47 vi~~~~a~LW~aGKel~r~-k~l~dYiGkNEKTKiiv 82 (154)
-++++.-.|+++||.|..+ ..|++| |-++...|++
T Consensus 34 gip~~~q~Li~~Gk~L~D~~~~L~~~-gi~~~~~l~l 69 (71)
T cd01796 34 GIPASQQQLIYNGRELVDNKRLLALY-GVKDGDLVVL 69 (71)
T ss_pred CCCHHHeEEEECCeEccCCcccHHHc-CCCCCCEEEE
Confidence 3577888999999999887 568888 6666677765
No 10
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=86.93 E-value=0.72 Score=30.47 Aligned_cols=60 Identities=20% Similarity=0.282 Sum_probs=37.7
Q ss_pred CCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccC
Q psy6853 21 NLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIG 88 (154)
Q Consensus 21 gLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g 88 (154)
.+++.+.|.-.-+--+... -++++...|||.|+.|..+++|++| |-.+-+.|.|-+..+|
T Consensus 16 ~v~~~~tV~~lK~~i~~~~-------g~~~~~q~L~~~g~~L~d~~~L~~~-~i~~~~~i~l~~~~~g 75 (76)
T cd01803 16 EVEPSDTIENVKAKIQDKE-------GIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRLRG 75 (76)
T ss_pred EECCcCcHHHHHHHHHHHh-------CCCHHHeEEEECCEECCCCCcHHHc-CCCCCCEEEEEEEccC
Confidence 4556666643322222222 3477788999999999999999997 3333455555554443
No 11
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=86.61 E-value=0.42 Score=35.33 Aligned_cols=42 Identities=12% Similarity=0.182 Sum_probs=30.0
Q ss_pred cccccCCceeEeeecccccccchhhhh-cCCCccceEEEEecccC
Q psy6853 45 KEVIEPSMGALWFAGKAMHRDKFVRDF-LGKNEKCKAIVKISKIG 88 (154)
Q Consensus 45 ~evi~~~~a~LW~aGKel~r~k~l~dY-iGkNEKTKiivKl~k~g 88 (154)
.+-|+++.-.|+++||.|..+.+|++| +..+. .|-+=+.-+|
T Consensus 60 ~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~s--tL~l~~~l~G 102 (103)
T cd01802 60 LEGIPVAQQHLIWNNMELEDEYCLNDYNISEGC--TLKLVLAMRG 102 (103)
T ss_pred HhCCChHHEEEEECCEECCCCCcHHHcCCCCCC--EEEEEEecCC
Confidence 344688889999999999999999999 44444 4444333333
No 12
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=86.46 E-value=0.48 Score=32.49 Aligned_cols=28 Identities=18% Similarity=0.418 Sum_probs=24.5
Q ss_pred ccccccCCceeEeeecccccccchhhhh
Q psy6853 44 SKEVIEPSMGALWFAGKAMHRDKFVRDF 71 (154)
Q Consensus 44 ~~evi~~~~a~LW~aGKel~r~k~l~dY 71 (154)
+.+-++++.-.|||+|+.|..+.+|.+|
T Consensus 30 ~~~gi~~~~q~Li~~G~~L~D~~~l~~~ 57 (70)
T cd01794 30 AAEGVDPCCQRWFFSGKLLTDKTRLQET 57 (70)
T ss_pred HHhCCCHHHeEEEECCeECCCCCCHHHc
Confidence 3445788889999999999999999998
No 13
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=85.77 E-value=0.61 Score=30.60 Aligned_cols=56 Identities=18% Similarity=0.226 Sum_probs=36.1
Q ss_pred ecCCCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhhcCCCccceEE
Q psy6853 18 YPMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAI 81 (154)
Q Consensus 18 yPmgLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKii 81 (154)
|+..+++.+.|.-.-+--++..| ++++...|++.|+.+..+++|++| |-.+-+.|+
T Consensus 12 ~~i~v~~~~tv~~lK~~i~~~~g-------i~~~~q~L~~~g~~l~d~~~L~~~-~i~~g~~l~ 67 (71)
T cd01812 12 HDLSISSQATFGDLKKMLAPVTG-------VEPRDQKLIFKGKERDDAETLDMS-GVKDGSKVM 67 (71)
T ss_pred EEEEECCCCcHHHHHHHHHHhhC-------CChHHeEEeeCCcccCccCcHHHc-CCCCCCEEE
Confidence 34456666666533333333333 477888999999999999999998 333334444
No 14
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=85.57 E-value=0.73 Score=30.92 Aligned_cols=34 Identities=15% Similarity=0.180 Sum_probs=27.6
Q ss_pred ccCCceeEeeecccccccchhhhhcCCCccceEEE
Q psy6853 48 IEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIV 82 (154)
Q Consensus 48 i~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiiv 82 (154)
++++.-.|+++||.|..+++|++| |-.+-+.|.+
T Consensus 35 i~~~~~~Li~~Gk~L~d~~tL~~~-~i~~~stl~l 68 (71)
T cd01808 35 ANQEQLVLIFAGKILKDTDTLTQH-NIKDGLTVHL 68 (71)
T ss_pred CCHHHEEEEECCeEcCCCCcHHHc-CCCCCCEEEE
Confidence 577888999999999999999999 5555555543
No 15
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=85.53 E-value=0.94 Score=29.90 Aligned_cols=56 Identities=27% Similarity=0.392 Sum_probs=36.4
Q ss_pred CCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhh-cCCCccceEEEE
Q psy6853 21 NLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDF-LGKNEKCKAIVK 83 (154)
Q Consensus 21 gLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dY-iGkNEKTKiivK 83 (154)
.+++.+.|.-.-+--+. ..-++++...|++.|+.|..+++|++| +..+.---++++
T Consensus 16 ~v~~~~tv~~lK~~i~~-------~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~ 72 (76)
T cd01806 16 DIEPTDKVERIKERVEE-------KEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLA 72 (76)
T ss_pred EECCCCCHHHHHHHHhH-------hhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEE
Confidence 45566666433322222 234588899999999999999999999 544444444443
No 16
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=85.37 E-value=0.72 Score=32.23 Aligned_cols=37 Identities=19% Similarity=0.314 Sum_probs=29.6
Q ss_pred cccCCceeEeeecccccccchhhhhcCCCccceEEEEe
Q psy6853 47 VIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKI 84 (154)
Q Consensus 47 vi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl 84 (154)
-++++.-.|++.||.|..+.+|++| |-.+.+.|.+=+
T Consensus 37 gi~~~~QrLi~~Gk~L~D~~tL~~y-~i~~~~~i~l~~ 73 (78)
T cd01797 37 NVEPECQRLFYRGKQMEDGHTLFDY-NVGLNDIIQLLV 73 (78)
T ss_pred CCCHHHeEEEeCCEECCCCCCHHHc-CCCCCCEEEEEE
Confidence 4688888999999999999999998 555566665533
No 17
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=84.33 E-value=0.44 Score=31.83 Aligned_cols=45 Identities=18% Similarity=0.341 Sum_probs=31.5
Q ss_pred CCCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhh
Q psy6853 20 MNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDF 71 (154)
Q Consensus 20 mgLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dY 71 (154)
..+.+.|-|.- +...-+...-++++...|+++|++|..+.+|++|
T Consensus 13 ~~v~~~~tV~~-------lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~ 57 (70)
T cd01798 13 VEVDPDTDIKQ-------LKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQEC 57 (70)
T ss_pred EEECCCChHHH-------HHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHc
Confidence 35556666642 2222233344577889999999999999999997
No 18
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=82.18 E-value=0.62 Score=31.21 Aligned_cols=36 Identities=25% Similarity=0.444 Sum_probs=26.5
Q ss_pred cCCceeEeeecccccccchhhhhcCCCccceEEEEec
Q psy6853 49 EPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKIS 85 (154)
Q Consensus 49 ~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~ 85 (154)
+++.-.|++.|+.|..+++|++| |-.+-+.|+|=+.
T Consensus 39 ~~~~q~L~~~G~~L~d~~~L~~~-~i~~~~~i~~~~~ 74 (77)
T cd01805 39 PPEQQKLIYSGKILKDDTTLEEY-KIDEKDFVVVMVS 74 (77)
T ss_pred ChhHeEEEECCEEccCCCCHHHc-CCCCCCEEEEEEe
Confidence 67888999999999999999998 3333344554443
No 19
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=79.79 E-value=2.7 Score=29.64 Aligned_cols=59 Identities=14% Similarity=0.269 Sum_probs=39.5
Q ss_pred CCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccC
Q psy6853 22 LPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIG 88 (154)
Q Consensus 22 LP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g 88 (154)
.-+.+|++..++--.+ .+-|+++...|+|.|+.|..+.++.+| |-.+=..|-|=+..+|
T Consensus 28 v~~~~~l~~l~~~y~~-------~~gi~~~~~rf~f~G~~L~~~~T~~~l-~m~d~d~I~v~l~l~G 86 (87)
T cd01763 28 IKRSTPLKKLMEAYCQ-------RQGLSMNSVRFLFDGQRIRDNQTPDDL-GMEDGDEIEVMLEQTG 86 (87)
T ss_pred EcCCCHHHHHHHHHHH-------HhCCCccceEEEECCeECCCCCCHHHc-CCCCCCEEEEEEeccc
Confidence 3456667655544332 334588999999999999999999999 4444444544454444
No 20
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=79.45 E-value=0.84 Score=28.69 Aligned_cols=48 Identities=23% Similarity=0.390 Sum_probs=32.5
Q ss_pred eecCCCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhh
Q psy6853 17 VYPMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDF 71 (154)
Q Consensus 17 vyPmgLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dY 71 (154)
.++..+++.+.|.-.-.--+...| ++++...|.+.|+.|..+++|.+|
T Consensus 11 ~~~~~v~~~~tv~~lk~~i~~~~~-------~~~~~~~L~~~g~~L~d~~tL~~~ 58 (64)
T smart00213 11 TITLEVKPSDTVSELKEKIAELTG-------IPVEQQRLIYKGKVLEDDRTLADY 58 (64)
T ss_pred eEEEEECCCCcHHHHHHHHHHHHC-------CCHHHEEEEECCEECCCCCCHHHc
Confidence 345556677776533332222223 366778899999999999999998
No 21
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=78.97 E-value=1.2 Score=29.06 Aligned_cols=24 Identities=17% Similarity=0.463 Sum_probs=22.2
Q ss_pred ccCCceeEeeecccccccchhhhh
Q psy6853 48 IEPSMGALWFAGKAMHRDKFVRDF 71 (154)
Q Consensus 48 i~~~~a~LW~aGKel~r~k~l~dY 71 (154)
++++...|++.|+.|..+.+|++|
T Consensus 36 i~~~~q~L~~~g~~L~d~~~L~~~ 59 (72)
T cd01809 36 IPVEQQRLIYSGRVLKDDETLSEY 59 (72)
T ss_pred cCHHHeEEEECCEECCCcCcHHHC
Confidence 478889999999999999999999
No 22
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=77.28 E-value=2.5 Score=38.08 Aligned_cols=65 Identities=25% Similarity=0.375 Sum_probs=42.3
Q ss_pred ecCCCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhhcCCCccceEEEEeccc
Q psy6853 18 YPMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKI 87 (154)
Q Consensus 18 yPmgLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~ 87 (154)
|+..+.+.|.|.-.-+.-+...| .+.+..+.-.|++.||.|..+++|++| |-.+...|||=+.++
T Consensus 13 ~~IeV~~~~TV~dLK~kI~~~~g----~~~ip~~~QkLIy~GkiL~Dd~tL~dy-~I~e~~~Ivvmv~k~ 77 (378)
T TIGR00601 13 FKIDMEPDETVKELKEKIEAEQG----KDAYPVAQQKLIYSGKILSDDKTVREY-KIKEKDFVVVMVSKP 77 (378)
T ss_pred EEEEeCCcChHHHHHHHHHHhhC----CCCCChhHeEEEECCEECCCCCcHHHc-CCCCCCEEEEEeccC
Confidence 34466677777533322222222 123678889999999999999999998 445666666656654
No 23
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=71.02 E-value=1.7 Score=30.01 Aligned_cols=57 Identities=18% Similarity=0.180 Sum_probs=38.2
Q ss_pred ecCCCCCCchhhhhhcccccccCcccccccccCCceeEe---eecccccccchhhhhcCCCccceEEE
Q psy6853 18 YPMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALW---FAGKAMHRDKFVRDFLGKNEKCKAIV 82 (154)
Q Consensus 18 yPmgLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW---~aGKel~r~k~l~dYiGkNEKTKiiv 82 (154)
|+-.+++.|+|.-.-+--++++ -++++.--|= +.||.+..+.+|++| |-++.++|++
T Consensus 12 ~~v~v~~~~Tv~~lK~~i~~~t-------gvp~~~QKLi~~~~~Gk~l~D~~~L~~~-~i~~g~~i~l 71 (74)
T cd01813 12 YSVTTLSEDTVLDLKQFIKTLT-------GVLPERQKLLGLKVKGKPAEDDVKISAL-KLKPNTKIMM 71 (74)
T ss_pred EEEEECCCCCHHHHHHHHHHHH-------CCCHHHEEEEeecccCCcCCCCcCHHHc-CCCCCCEEEE
Confidence 5666677777742222222332 3566666666 589999999999999 6777888875
No 24
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=70.80 E-value=1 Score=31.13 Aligned_cols=37 Identities=5% Similarity=0.034 Sum_probs=28.2
Q ss_pred ccCCceeE--eeecccccccchhhhhcCCCccceEEEEec
Q psy6853 48 IEPSMGAL--WFAGKAMHRDKFVRDFLGKNEKCKAIVKIS 85 (154)
Q Consensus 48 i~~~~a~L--W~aGKel~r~k~l~dYiGkNEKTKiivKl~ 85 (154)
++++.-.| ++.|+.|..+++|++| |-.+-+.|.|=++
T Consensus 38 i~~~~qrL~~~~~G~~L~D~~tL~~~-gi~~gs~l~l~~~ 76 (80)
T cd01792 38 VPAFQQRLAHLDSREVLQDGVPLVSQ-GLGPGSTVLLVVQ 76 (80)
T ss_pred CCHHHEEEEeccCCCCCCCCCCHHHc-CCCCCCEEEEEEE
Confidence 46677777 8999999999999999 6656666655443
No 25
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=62.46 E-value=12 Score=25.85 Aligned_cols=38 Identities=13% Similarity=0.104 Sum_probs=30.4
Q ss_pred ccCCceeEeeecccccccchhhhhcCCCccceEEEEeccc
Q psy6853 48 IEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKI 87 (154)
Q Consensus 48 i~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~ 87 (154)
+.++.-.|=++||.|.++ +|.+| |-.+.+.|++=....
T Consensus 37 ~~~~~qrL~~~Gk~L~d~-~L~~~-gi~~~~~i~l~~~~~ 74 (78)
T cd01804 37 VPKERLALLHRETRLSSG-KLQDL-GLGDGSKLTLVPTVE 74 (78)
T ss_pred CChHHEEEEECCcCCCCC-cHHHc-CCCCCCEEEEEeecc
Confidence 577777888999999988 99999 777788887765443
No 26
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=59.98 E-value=14 Score=23.25 Aligned_cols=36 Identities=22% Similarity=0.377 Sum_probs=27.0
Q ss_pred ccCCceeEeeecccccccchhhhhcCCCccceEEEEe
Q psy6853 48 IEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKI 84 (154)
Q Consensus 48 i~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl 84 (154)
++++...|++.|+.+..+..|.+|-=. +-+.|.|..
T Consensus 33 ~~~~~~~l~~~g~~l~d~~~l~~~~v~-~~~~i~v~~ 68 (69)
T cd01769 33 VPPEQQRLIYAGKILKDDKTLSDYGIQ-DGSTLHLVL 68 (69)
T ss_pred cChHHEEEEECCcCCCCcCCHHHCCCC-CCCEEEEEE
Confidence 467778899999999999999887333 346677654
No 27
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=51.76 E-value=9.6 Score=25.11 Aligned_cols=48 Identities=19% Similarity=0.280 Sum_probs=31.5
Q ss_pred CCCCchhhhhhcccccccCcccccccccC-CceeEeeecccccccchhhhh-cCCCc
Q psy6853 22 LPTHDPIRLEFENREDLTGTQASKEVIEP-SMGALWFAGKAMHRDKFVRDF-LGKNE 76 (154)
Q Consensus 22 LP~~Dpir~elen~edl~gt~a~~evi~~-~~a~LW~aGKel~r~k~l~dY-iGkNE 76 (154)
+.+.+|++-.++.-.. .--+++ +...|+|.|+.|..+.++.+| +-.++
T Consensus 17 v~~~~~~~~l~~~~~~-------~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d 66 (72)
T PF11976_consen 17 VKPTTTVSKLIEKYCE-------KKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGD 66 (72)
T ss_dssp EETTSCCHHHHHHHHH-------HHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTE
T ss_pred ECCCCcHHHHHHHHHH-------hhCCCccceEEEEECCEEcCCCCCHHHCCCCCCC
Confidence 4456677655543222 223456 899999999999999999998 54443
No 28
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=48.86 E-value=48 Score=25.71 Aligned_cols=43 Identities=19% Similarity=0.267 Sum_probs=34.8
Q ss_pred ccCCceeEeeecccccc-cchhhhhcCCCccceEEEEecccCCCCCCCCCCCCH
Q psy6853 48 IEPSMGALWFAGKAMHR-DKFVRDFLGKNEKCKAIVKISKIGSGAPSREPVMNE 100 (154)
Q Consensus 48 i~~~~a~LW~aGKel~r-~k~l~dYiGkNEKTKiivKl~k~g~GaP~REp~ise 100 (154)
+.|..--||+.|++|.. .++|++| |-+.++.|.+++. ||+-|.
T Consensus 40 V~P~dQkL~~dG~~L~DDsrTLssy-Gv~sgSvl~Llid---------eP~~d~ 83 (107)
T cd01795 40 VAPFDQNLSIDGKILSDDCATLGTL-GVIPESVILLKAD---------EPIADY 83 (107)
T ss_pred CCcccceeeecCceeccCCccHHhc-CCCCCCEEEEEec---------CCcccH
Confidence 45677789999998887 7888887 7888999999973 777775
No 29
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=47.28 E-value=13 Score=25.75 Aligned_cols=53 Identities=15% Similarity=0.049 Sum_probs=35.6
Q ss_pred CCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhhcCCCccceEE
Q psy6853 21 NLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAI 81 (154)
Q Consensus 21 gLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKii 81 (154)
.++|.+.|. ||-..-+...-++++.-.|=++||.|..+++|.+| |-.+.+.|-
T Consensus 17 ~v~~~~TV~-------~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~y-gi~~~stv~ 69 (73)
T cd01791 17 KCNPDDTIG-------DLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDY-EIHDGMNLE 69 (73)
T ss_pred EeCCCCcHH-------HHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHc-CCCCCCEEE
Confidence 556666664 33322222223688888899999999999999998 555555554
No 30
>KOG0005|consensus
Probab=43.08 E-value=8.6 Score=27.55 Aligned_cols=26 Identities=38% Similarity=0.567 Sum_probs=23.0
Q ss_pred ccccCCceeEeeecccccccchhhhh
Q psy6853 46 EVIEPSMGALWFAGKAMHRDKFVRDF 71 (154)
Q Consensus 46 evi~~~~a~LW~aGKel~r~k~l~dY 71 (154)
+-|+|..-.|-||||+|..+++-.+|
T Consensus 34 eGIPp~qqrli~~gkqm~DD~tA~~Y 59 (70)
T KOG0005|consen 34 EGIPPQQQRLIYAGKQMNDDKTAAHY 59 (70)
T ss_pred cCCCchhhhhhhccccccccccHHHh
Confidence 44588888999999999999999998
No 31
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=40.14 E-value=33 Score=24.56 Aligned_cols=28 Identities=14% Similarity=0.345 Sum_probs=23.6
Q ss_pred ccCCceeEeeecccccccchhhhh-cCCC
Q psy6853 48 IEPSMGALWFAGKAMHRDKFVRDF-LGKN 75 (154)
Q Consensus 48 i~~~~a~LW~aGKel~r~k~l~dY-iGkN 75 (154)
.+++.-.|=++||.|..+++|++| |-.|
T Consensus 39 ~~~dqQrLIy~GKiL~D~~TL~dygI~~g 67 (75)
T cd01815 39 PDPELIDLIHCGRKLKDDQTLDFYGIQSG 67 (75)
T ss_pred CChHHeEEEeCCcCCCCCCcHHHcCCCCC
Confidence 357888999999999999999999 4433
No 32
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development. The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.
Probab=38.59 E-value=25 Score=26.44 Aligned_cols=20 Identities=25% Similarity=0.360 Sum_probs=16.2
Q ss_pred CHHHHHHHHHHHHHhHHHHh
Q psy6853 99 NEEEKKQLMLHYYRKQEEMK 118 (154)
Q Consensus 99 see~qk~mMa~yykrQEElK 118 (154)
|.|+-|+||.||+----|..
T Consensus 58 SDeEm~AMlsyy~~~~~E~~ 77 (91)
T cd06395 58 SDEEMKAMLSYYCSTVMEQQ 77 (91)
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 89999999999987655544
No 33
>KOG0003|consensus
Probab=35.79 E-value=6.6 Score=30.98 Aligned_cols=40 Identities=28% Similarity=0.523 Sum_probs=30.5
Q ss_pred cccccCCceeEeeecccccccchhhhh-cCCCccceEEEEe
Q psy6853 45 KEVIEPSMGALWFAGKAMHRDKFVRDF-LGKNEKCKAIVKI 84 (154)
Q Consensus 45 ~evi~~~~a~LW~aGKel~r~k~l~dY-iGkNEKTKiivKl 84 (154)
.+-|+++..-|=|+||.|..|-+|+|| +-+-.--..+.||
T Consensus 33 ~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL 73 (128)
T KOG0003|consen 33 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (128)
T ss_pred ccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHH
Confidence 456789999999999999999999999 4444433444444
No 34
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=34.36 E-value=1e+02 Score=24.63 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=33.4
Q ss_pred ccccCCceeEeeecccccc-cchhhhhcCCCccceEEEEecc
Q psy6853 46 EVIEPSMGALWFAGKAMHR-DKFVRDFLGKNEKCKAIVKISK 86 (154)
Q Consensus 46 evi~~~~a~LW~aGKel~r-~k~l~dYiGkNEKTKiivKl~k 86 (154)
.-....++.|-|+|--+.. +....||-|.+=|=||||=+..
T Consensus 17 ~~~~~~~~elVFvGyGi~ape~~~dDy~g~DVkGKiVvvl~~ 58 (157)
T cd04821 17 DEVSLKDSPLVFVGYGIVAPEYGWDDYKGLDVKGKTVVILVN 58 (157)
T ss_pred cccccccCCEEEeccCccCcccCcccccCCCcCCcEEEEEcC
Confidence 3456788999999988775 4567799999999999988854
No 35
>smart00563 PlsC Phosphate acyltransferases. Function in phospholipid biosynthesis and have either glycerolphosphate, 1-acylglycerolphosphate, or 2-acylglycerolphosphoethanolamine acyltransferase activities. Tafazzin, the product of the gene mutated in patients with Barth syndrome, is a member of this family.
Probab=28.44 E-value=49 Score=22.26 Aligned_cols=20 Identities=25% Similarity=0.609 Sum_probs=14.7
Q ss_pred hHHHHHHhh-cceeeeecCCC
Q psy6853 3 WHHTLSLLR-GCIMIVYPMNL 22 (154)
Q Consensus 3 ~~e~Ld~lr-GAvmIvyPmgL 22 (154)
+++.++.++ |...++||.|-
T Consensus 65 ~~~~~~~l~~~~~~~ifPeG~ 85 (118)
T smart00563 65 LREAVRLLRDGGWLLIFPEGT 85 (118)
T ss_pred HHHHHHHHhCCCEEEEeCCcc
Confidence 455666554 88889999986
No 36
>smart00700 JHBP Juvenile hormone binding protein domains in insects. The juvenile hormone exerts pleiotropic functions during insect life cycles and its binding proteins regulate these functions.
Probab=28.01 E-value=30 Score=27.73 Aligned_cols=28 Identities=18% Similarity=0.356 Sum_probs=18.9
Q ss_pred hHHHHHHhhcceeeeec-CCCCCCchhhh
Q psy6853 3 WHHTLSLLRGCIMIVYP-MNLPTHDPIRL 30 (154)
Q Consensus 3 ~~e~Ld~lrGAvmIvyP-mgLP~~Dpir~ 30 (154)
+.++++.++--..--+| .|+|+.||+++
T Consensus 19 i~~~~~~~~~~~~~G~Pe~gip~ldPl~i 47 (225)
T smart00700 19 LRDAIEALLPQLKNGIPEYGIPPLDPLEI 47 (225)
T ss_pred HHHHHHHHHHHHhcCCCccCCCCcCCEEe
Confidence 34555555544444577 79999999973
No 37
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=27.96 E-value=20 Score=24.86 Aligned_cols=28 Identities=11% Similarity=0.236 Sum_probs=21.2
Q ss_pred cccCCceeEeeeccccc-ccchhhhh-cCCC
Q psy6853 47 VIEPSMGALWFAGKAMH-RDKFVRDF-LGKN 75 (154)
Q Consensus 47 vi~~~~a~LW~aGKel~-r~k~l~dY-iGkN 75 (154)
-|+++.-.| |.|+.|. .+.+|++| +..|
T Consensus 37 gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~ 66 (75)
T cd01799 37 GFPPAVQRW-VIGQRLARDQETLYSHGIRTN 66 (75)
T ss_pred CcCHHHEEE-EcCCeeCCCcCCHHHcCCCCC
Confidence 347777788 9999997 56899999 4334
No 38
>PF03711 OKR_DC_1_C: Orn/Lys/Arg decarboxylase, C-terminal domain; InterPro: IPR008286 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 3Q16_C 3N75_A 2X3L_A 2VYC_D.
Probab=27.37 E-value=22 Score=27.85 Aligned_cols=26 Identities=19% Similarity=0.494 Sum_probs=18.5
Q ss_pred chHHHHHHhhcceeeeecCCCCCCch
Q psy6853 2 PWHHTLSLLRGCIMIVYPMNLPTHDP 27 (154)
Q Consensus 2 ~~~e~Ld~lrGAvmIvyPmgLP~~Dp 27 (154)
|+++++..+.+-..+.||-|.|-.=|
T Consensus 69 ~l~~~~GrIsae~i~pYPPGIPll~p 94 (136)
T PF03711_consen 69 PLEEAVGRISAEFIVPYPPGIPLLVP 94 (136)
T ss_dssp EGGG-TTSBBSS-BEECTTTS-SB-T
T ss_pred EccccCCeEEEeeeeecCCCCcEECC
Confidence 67888888888889999999996544
No 39
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=26.96 E-value=83 Score=25.43 Aligned_cols=18 Identities=39% Similarity=0.612 Sum_probs=11.2
Q ss_pred CCCCCCCCCHHHHHHHHH
Q psy6853 91 APSREPVMNEEEKKQLML 108 (154)
Q Consensus 91 aP~REp~isee~qk~mMa 108 (154)
-|+|+|..+++...++..
T Consensus 13 ~p~~~~~~~~~~~~~~~~ 30 (192)
T cd02988 13 LPPKPPSPKEEEEEALEL 30 (192)
T ss_pred CCCCCCCCchhhHHHHHH
Confidence 466788777765554443
No 40
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=25.81 E-value=35 Score=26.50 Aligned_cols=23 Identities=26% Similarity=0.166 Sum_probs=21.5
Q ss_pred CCceeEeeecccccccchhhhhc
Q psy6853 50 PSMGALWFAGKAMHRDKFVRDFL 72 (154)
Q Consensus 50 ~~~a~LW~aGKel~r~k~l~dYi 72 (154)
++.--|=++||.|..+++|++|-
T Consensus 50 ~~~qKLIysGKiLeD~~TL~d~~ 72 (113)
T cd01814 50 VNEVKLISAGKILENSKTVGECR 72 (113)
T ss_pred HHHeEEEeCCeecCCCCcHHHhC
Confidence 88889999999999999999993
No 41
>COG1451 Predicted metal-dependent hydrolase [General function prediction only]
Probab=25.55 E-value=60 Score=27.16 Aligned_cols=87 Identities=16% Similarity=0.100 Sum_probs=56.3
Q ss_pred hcceeeeecCCCCCCchhhhhhcccccccCcccccccccCC----ceeEeeecccccccchhhhhcCCCccceEEEEecc
Q psy6853 11 RGCIMIVYPMNLPTHDPIRLEFENREDLTGTQASKEVIEPS----MGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISK 86 (154)
Q Consensus 11 rGAvmIvyPmgLP~~Dpir~elen~edl~gt~a~~evi~~~----~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k 86 (154)
.|.|.++=|++||..+......++..=+.++.+..+..... ...+.|-|+++. ++++- .
T Consensus 30 ~~~v~v~~P~~~~~~~~~~fl~k~~~wI~~~l~~~~~~~~~~~~~~~~~~~lg~~~~----------------~~~~~-~ 92 (223)
T COG1451 30 GGTVRVSVPPGLSDEEVENFLAKKLGWLQKKLAKLEEQVRLPIGEGELILLLGKKYE----------------LIVHK-G 92 (223)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccchhhcceeE----------------eeecc-c
Confidence 35677788999999988887777766666665544333322 244555555443 22222 3
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhH
Q psy6853 87 IGSGAPSREPVMNEEEKKQLMLHYYRKQ 114 (154)
Q Consensus 87 ~g~GaP~REp~isee~qk~mMa~yykrQ 114 (154)
....+|.+....+.+..+.-...+++++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 120 (223)
T COG1451 93 HVLIAPGVHDEVADENLKAYLEDFLKEI 120 (223)
T ss_pred ceeccccccccccHHHHHHHHHHHHHHH
Confidence 3334558888888888888888877765
No 42
>PF09776 Mitoc_L55: Mitochondrial ribosomal protein L55; InterPro: IPR018615 Members of this family are involved in mitochondrial biogenesis and G2/M phase cell cycle progression. They form a component of the mitochondrial ribosome large subunit (39S) which comprises a 16S rRNA and about 50 distinct proteins.
Probab=25.09 E-value=39 Score=26.36 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=14.8
Q ss_pred CCCHHHHHHHHHHHHHhH
Q psy6853 97 VMNEEEKKQLMLHYYRKQ 114 (154)
Q Consensus 97 ~isee~qk~mMa~yykrQ 114 (154)
.+|||+|++.+.--..++
T Consensus 76 ~LSeeERk~rl~kR~pk~ 93 (116)
T PF09776_consen 76 TLSEEERKARLRKRKPKK 93 (116)
T ss_pred cCCHHHHHHHHHHhCCcc
Confidence 689999999998776644
No 43
>KOG0599|consensus
Probab=23.87 E-value=1.7e+02 Score=27.12 Aligned_cols=78 Identities=21% Similarity=0.262 Sum_probs=53.9
Q ss_pred cccccccchhhhhcCCCccc-eEEEEecccCCCCCCCCCCCCHHHHHHHH--------HHHHHhHHHHhhhhhccccccc
Q psy6853 59 GKAMHRDKFVRDFLGKNEKC-KAIVKISKIGSGAPSREPVMNEEEKKQLM--------LHYYRKQEEMKLLESDTDEAFR 129 (154)
Q Consensus 59 GKel~r~k~l~dYiGkNEKT-KiivKl~k~g~GaP~REp~isee~qk~mM--------a~yykrQEElKkleedddd~yl 129 (154)
+..|.+|++|.+.+|..-.- .=|+|-+ --.+.|+=.--||+=.---.| -||||||=-|=.+...---+|-
T Consensus 170 a~~l~~GekLrelCGTPgYLAPEtikC~-m~e~~pGYs~EVD~Wa~GVImyTLLaGcpPFwHRkQmlMLR~ImeGkyqF~ 248 (411)
T KOG0599|consen 170 ACQLEPGEKLRELCGTPGYLAPETIKCS-MYENHPGYSKEVDEWACGVIMYTLLAGCPPFWHRKQMLMLRMIMEGKYQFR 248 (411)
T ss_pred eeccCCchhHHHhcCCCcccChhheeee-cccCCCCccchhhHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcccccC
Confidence 47899999999999986542 1223332 234555555555554443333 2799999988888888888999
Q ss_pred cccccCch
Q psy6853 130 NSDWADNT 137 (154)
Q Consensus 130 nS~WAd~~ 137 (154)
+-+|||-.
T Consensus 249 speWadis 256 (411)
T KOG0599|consen 249 SPEWADIS 256 (411)
T ss_pred Ccchhhcc
Confidence 99999854
No 44
>PF10783 DUF2599: Protein of unknown function (DUF2599); InterPro: IPR019719 The function of the bacterial proteins in this entry is not known.
Probab=23.46 E-value=44 Score=24.85 Aligned_cols=14 Identities=29% Similarity=0.707 Sum_probs=12.7
Q ss_pred ccccCchhHHHhhc
Q psy6853 131 SDWADNTSLRKNLL 144 (154)
Q Consensus 131 S~WAd~~~LK~q~~ 144 (154)
+.|+|..+|+.||.
T Consensus 46 ~~W~~~~~Mr~Qf~ 59 (93)
T PF10783_consen 46 RQWADTPGMRDQFD 59 (93)
T ss_pred ccccCChhHHHHHH
Confidence 56999999999996
No 45
>PF06589 CRA: Circumsporozoite-related antigen (CRA); InterPro: IPR009512 The mode of choroquine action or resistance of the malarial parasite Plasmodium falciparum is not fully elucidated and presents a huge challenge world wide. Plasmodial EXP-1 protein, also called circumsporozoite-related antigen, changes under chloroquine treatment, making it a potential chloroquine resistance marker []. Although there are no authentic repeats in this antigen, there are a number of internal homologies (N-A-N-P) and (N-A-D-P). The first of these tetramers is the dominant repeat found in the circumsporozoite protein (CSP) of P. falciparum and reacts with antibodies against circumsporozoite-related antigen (CRA). It is possible that immune responses to CRA may act against the CSP also. The CRA is found in many parasitic strains.
Probab=23.26 E-value=88 Score=25.54 Aligned_cols=26 Identities=23% Similarity=0.483 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHHHHHHhHHHHhhhhhc
Q psy6853 95 EPVMNEEEKKQLMLHYYRKQEEMKLLESD 123 (154)
Q Consensus 95 Ep~isee~qk~mMa~yykrQEElKkleed 123 (154)
||.||-.+ ++..+|||.||+-++...
T Consensus 44 Ep~idVhd---Lisdmv~KeeElv~~~K~ 69 (157)
T PF06589_consen 44 EPLIDVHD---LISDMVKKEEELVNVTKK 69 (157)
T ss_pred CccccHHH---HHHHHHHhHHHHHHHHHh
Confidence 89999855 999999999999776543
No 46
>PF09660 DUF2397: Protein of unknown function (DUF2397); InterPro: IPR013493 Proteins in this family are encoded within a conserved gene four-gene neighbourhood found sporadically in a phylogenetically broad range of bacteria including: Nocardia farcinica, Symbiobacterium thermophilum, Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1)) and Ralstonia solanacearum (Betaproteobacteria).
Probab=23.13 E-value=1.5e+02 Score=27.64 Aligned_cols=43 Identities=12% Similarity=0.320 Sum_probs=32.5
Q ss_pred eeecccccccchhhhhcCCCccceEEEEecccCCCC-CCCCCCC-CHHHHHHHHHHHHHhH
Q psy6853 56 WFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGSGA-PSREPVM-NEEEKKQLMLHYYRKQ 114 (154)
Q Consensus 56 W~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g~Ga-P~REp~i-see~qk~mMa~yykrQ 114 (154)
||-+.++. |.+++..+|..+ +.|.|.+ |-..+|+.++..|+++
T Consensus 355 w~ea~P~~----------------v~~~lR~rg~~~~~g~~~~v~D~~~~k~~~~~~~~~~ 399 (486)
T PF09660_consen 355 WWEAPPVE----------------VSLRLRERGRRERRGRPARVRDRSAEKARLREQARAE 399 (486)
T ss_pred cccCCCeE----------------eeeecccCCCCCCCCCCCCCCCcHHHHHHHHHHHHHH
Confidence 99888886 888888877654 5677787 8877777777666654
No 47
>PF09130 DUF1932: Domain of unknown function (DUF1932); InterPro: IPR015814 This domain has been found in a number of eukaryotic and prokaryotic proteins, some of which are predicted to be 6-phosphogluconate dehydrogenase, NAD-binding proteins.; PDB: 3QSG_A 1I36_A 4EZB_A.
Probab=22.70 E-value=88 Score=21.39 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=15.9
Q ss_pred HHHHHHHHHhHHHHhhhhh
Q psy6853 104 KQLMLHYYRKQEEMKLLES 122 (154)
Q Consensus 104 k~mMa~yykrQEElKklee 122 (154)
-.|..|.|||.+||+...+
T Consensus 31 ~~~~~hA~Rr~~EM~Eia~ 49 (73)
T PF09130_consen 31 PRMAPHAYRRAAEMEEIAD 49 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHH
Confidence 3578999999999998654
Done!