Query psy6853
Match_columns 154
No_of_seqs 96 out of 98
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 20:05:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6853.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6853hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1uel_A HHR23B, UV excision rep 94.6 0.028 9.5E-07 38.7 3.4 45 47-92 38-82 (95)
2 4fbj_B NEDD8; effector-HOST ta 94.2 0.016 5.3E-07 39.4 1.3 67 19-93 14-80 (88)
3 1v5o_A 1700011N24RIK protein; 93.8 0.016 5.6E-07 40.5 0.8 53 45-98 44-98 (102)
4 3n3k_B Ubiquitin; hydrolase, p 93.3 0.033 1.1E-06 36.5 1.7 64 19-90 17-80 (85)
5 1wy8_A NP95-like ring finger p 92.4 0.14 4.7E-06 34.1 3.8 46 46-93 43-88 (89)
6 3m62_B UV excision repair prot 92.2 0.061 2.1E-06 38.0 2.0 63 18-88 14-76 (106)
7 1wgd_A Homocysteine-responsive 92.2 0.19 6.6E-06 34.1 4.4 44 47-90 46-90 (93)
8 3k9o_B Ubiquitin, UBB+1; E2-25 91.7 0.08 2.7E-06 35.7 2.0 64 20-91 16-79 (96)
9 1wx8_A Riken cDNA 4931431F19; 91.3 0.12 4.2E-06 35.1 2.6 47 46-93 50-96 (96)
10 1ttn_A DC-UBP, dendritic cell- 90.9 0.17 5.8E-06 35.5 3.1 46 46-92 57-102 (106)
11 2kan_A Uncharacterized protein 90.7 0.17 5.8E-06 35.0 2.9 44 46-90 48-92 (94)
12 1ndd_A NEDD8, protein (ubiquit 90.6 0.12 4.1E-06 32.7 1.9 61 20-88 15-75 (76)
13 3a9j_A Ubiquitin; protein comp 90.2 0.15 5.2E-06 32.2 2.1 60 20-88 15-75 (76)
14 1sif_A Ubiquitin; hydrophobic 90.1 0.1 3.4E-06 35.4 1.3 62 20-89 24-85 (88)
15 1wx7_A Ubiquilin 3; ubiquitin- 89.7 0.38 1.3E-05 33.5 4.1 42 46-88 50-91 (106)
16 2hj8_A Interferon-induced 17 k 89.4 0.14 4.6E-06 34.6 1.5 43 46-90 38-81 (88)
17 2io1_B Small ubiquitin-related 89.3 0.24 8.1E-06 34.8 2.8 64 23-94 25-88 (94)
18 3phx_B Ubiquitin-like protein 89.1 0.15 5.2E-06 33.1 1.6 38 46-83 38-76 (79)
19 3rt3_B Ubiquitin-like protein 89.1 0.13 4.6E-06 37.6 1.4 45 45-90 114-158 (159)
20 4dwf_A HLA-B-associated transc 89.0 0.26 8.7E-06 32.9 2.6 27 46-72 39-66 (90)
21 3dbh_I NEDD8; cell cycle, acti 88.9 0.11 3.7E-06 34.2 0.7 41 47-88 47-87 (88)
22 3mtn_B UBA80, ubcep1, ubiquiti 88.7 0.15 5.1E-06 33.1 1.3 43 47-90 38-80 (85)
23 1j8c_A Ubiquitin-like protein 88.7 0.41 1.4E-05 34.9 3.8 48 46-94 65-112 (125)
24 1se9_A Ubiquitin family; ubiqu 88.2 0.63 2.1E-05 35.0 4.6 44 46-89 56-106 (126)
25 3b1l_X E3 ubiquitin-protein li 87.8 0.098 3.3E-06 33.6 0.0 56 20-82 15-71 (76)
26 2lxa_A Ubiquitin-like protein 87.9 0.57 2E-05 32.4 3.9 59 21-86 19-78 (87)
27 2l7r_A Ubiquitin-like protein 87.7 0.32 1.1E-05 33.3 2.6 61 20-88 32-92 (93)
28 1wia_A Hypothetical ubiquitin- 87.6 0.9 3.1E-05 30.7 4.8 44 50-94 42-86 (95)
29 2uyz_B Small ubiquitin-related 87.3 0.59 2E-05 30.2 3.5 41 46-88 37-78 (79)
30 1yx5_B Ubiquitin; proteasome, 86.9 0.34 1.2E-05 33.0 2.3 42 47-89 35-76 (98)
31 2wyq_A HHR23A, UV excision rep 86.3 0.77 2.6E-05 29.9 3.7 39 47-86 43-81 (85)
32 1wgh_A Ubiquitin-like 3, HCG-1 86.3 0.98 3.3E-05 33.2 4.6 45 48-93 60-104 (116)
33 1wh3_A 59 kDa 2'-5'-oligoadeny 86.1 1 3.4E-05 29.5 4.2 42 47-89 42-83 (87)
34 2bwf_A Ubiquitin-like protein 86.0 0.26 8.9E-06 31.4 1.2 57 20-84 18-74 (77)
35 1we6_A Splicing factor, putati 85.9 0.35 1.2E-05 34.0 2.0 46 44-90 63-108 (111)
36 2kdi_A Ubiquitin, vacuolar pro 85.4 0.41 1.4E-05 34.2 2.2 63 20-90 24-86 (114)
37 4hcn_B Polyubiquitin, ubiquiti 85.3 0.36 1.2E-05 33.2 1.7 41 47-88 57-97 (98)
38 1we7_A SF3A1 protein; structur 85.0 0.88 3E-05 32.2 3.7 45 45-90 68-112 (115)
39 3v6c_B Ubiquitin; structural g 84.6 0.49 1.7E-05 31.8 2.1 37 46-82 51-88 (91)
40 3l0w_B Monoubiquitinated proli 84.3 0.52 1.8E-05 36.0 2.4 62 20-89 15-76 (169)
41 2faz_A Ubiquitin-like containi 84.3 0.24 8E-06 32.0 0.4 26 46-71 38-63 (78)
42 3b08_A Polyubiquitin-C, ubiqui 83.4 0.66 2.3E-05 32.9 2.5 41 47-88 111-151 (152)
43 4a20_A Ubiquitin-like protein 83.4 1 3.5E-05 31.8 3.5 39 47-86 57-96 (98)
44 1wyw_B Ubiquitin-like protein 83.0 1.3 4.3E-05 30.5 3.7 42 45-88 54-96 (97)
45 1yqb_A Ubiquilin 3; structural 82.9 0.92 3.1E-05 31.6 3.0 40 46-86 55-94 (100)
46 2kk8_A Uncharacterized protein 81.8 0.41 1.4E-05 32.4 0.8 37 46-84 44-82 (84)
47 3u5c_f 40S ribosomal protein S 81.7 0.28 9.7E-06 37.4 0.0 66 18-91 13-78 (152)
48 2dzi_A Ubiquitin-like protein 81.7 0.33 1.1E-05 31.2 0.3 31 46-76 41-72 (81)
49 3u5e_m 60S ribosomal protein L 81.0 0.33 1.1E-05 35.1 0.2 64 18-89 13-76 (128)
50 1x1m_A Ubiquitin-like protein 80.2 2.6 8.9E-05 29.4 4.6 37 47-84 61-98 (107)
51 3m63_B Ubiquitin domain-contai 80.1 0.73 2.5E-05 32.2 1.7 36 46-82 61-96 (101)
52 2klc_A Ubiquilin-1; ubiquitin- 79.6 0.65 2.2E-05 32.3 1.3 38 46-84 58-95 (101)
53 3u30_A Ubiquitin, linear DI-ub 79.2 1.2 4E-05 33.2 2.7 52 19-77 34-86 (172)
54 4b6w_A Tubulin-specific chaper 78.5 0.89 3E-05 31.2 1.7 50 22-78 21-77 (86)
55 2ojr_A Ubiquitin; lanthide-bin 77.0 2.9 0.0001 29.2 4.1 42 46-88 69-110 (111)
56 4ajy_B Transcription elongatio 76.9 0.77 2.6E-05 34.3 1.0 27 45-71 34-60 (118)
57 2io0_B Small ubiquitin-related 76.7 3 0.0001 29.0 4.0 61 23-91 23-83 (91)
58 2gow_A HCG-1 protein, ubiquiti 76.5 2.9 9.8E-05 30.9 4.1 23 49-71 62-84 (125)
59 3vdz_A Ubiquitin-40S ribosomal 75.9 2.7 9.3E-05 29.6 3.7 42 46-88 69-110 (111)
60 3rt3_B Ubiquitin-like protein 75.4 0.97 3.3E-05 33.0 1.2 51 18-75 15-68 (159)
61 2kd0_A LRR repeats and ubiquit 75.2 0.91 3.1E-05 30.5 1.0 35 47-82 46-80 (85)
62 1wju_A NEDD8 ultimate buster-1 75.1 3.2 0.00011 29.8 3.9 47 43-92 50-97 (100)
63 1oqy_A HHR23A, UV excision rep 74.0 2.3 7.8E-05 36.7 3.4 33 47-80 45-77 (368)
64 3q3f_A Ribonuclease/ubiquitin 74.0 0.97 3.3E-05 35.7 1.0 44 45-89 138-181 (189)
65 3b08_A Polyubiquitin-C, ubiqui 72.9 2.8 9.6E-05 29.6 3.1 50 19-75 14-64 (152)
66 4eew_A Large proline-rich prot 72.8 2.4 8.2E-05 27.9 2.6 26 46-71 51-76 (88)
67 3u30_A Ubiquitin, linear DI-ub 71.8 0.81 2.8E-05 34.1 0.0 30 46-75 130-160 (172)
68 3plu_A Ubiquitin-like modifier 71.7 1.3 4.4E-05 31.8 1.1 29 43-71 52-80 (93)
69 1v2y_A 3300001G02RIK protein; 71.4 4.7 0.00016 29.0 4.1 41 51-92 61-102 (105)
70 2fnj_B Transcription elongatio 70.4 1.3 4.6E-05 32.8 1.0 31 43-73 32-63 (118)
71 1v5t_A 8430435I17RIK protein; 70.3 2 6.7E-05 29.1 1.7 54 21-82 23-79 (90)
72 2dzj_A Synaptic glycoprotein S 69.5 2.9 0.0001 28.6 2.5 36 47-83 49-86 (88)
73 2eke_C Ubiquitin-like protein 67.4 3.5 0.00012 29.8 2.7 42 46-88 64-105 (106)
74 1v86_A DNA segment, CHR 7, way 63.0 2.2 7.6E-05 29.2 0.9 34 47-82 51-84 (95)
75 1wz0_A Ubiquitin-like protein 63.0 4.6 0.00016 28.8 2.6 61 23-91 42-102 (104)
76 1wxv_A BAG-family molecular ch 61.2 11 0.00036 25.1 4.0 38 45-83 44-82 (92)
77 2d07_B Ubiquitin-like protein 59.8 6.2 0.00021 27.2 2.7 57 24-88 36-92 (93)
78 2kdb_A Homocysteine-responsive 59.5 5.3 0.00018 28.0 2.3 25 49-73 64-88 (99)
79 1uh6_A Ubiquitin-like 5; beta- 54.5 1.7 5.7E-05 31.3 -1.0 29 43-71 59-87 (100)
80 1wgg_A Ubiquitin carboxyl-term 53.9 3.6 0.00012 28.3 0.6 36 46-83 41-76 (96)
81 2xzm_9 RPS31E; ribosome, trans 48.1 4.3 0.00015 32.3 0.3 60 19-91 14-73 (189)
82 3hjh_A Transcription-repair-co 46.6 18 0.0006 31.9 4.0 23 10-34 164-186 (483)
83 2k8h_A Small ubiquitin protein 44.4 14 0.00047 26.7 2.5 58 23-88 44-101 (110)
84 3ai5_A Yeast enhanced green fl 39.8 7.2 0.00025 33.0 0.4 31 46-76 267-298 (307)
85 3fpn_B Geobacillus stearotherm 38.1 8.3 0.00028 27.4 0.5 25 10-35 51-75 (106)
86 3a4r_A Nfatc2-interacting prot 37.8 11 0.00037 25.1 1.0 42 23-71 26-67 (79)
87 2npt_A Dual specificity mitoge 37.7 27 0.00091 25.9 3.2 21 99-119 72-92 (106)
88 1wm3_A Ubiquitin-like protein 37.0 11 0.00039 24.3 1.0 42 23-71 19-60 (72)
89 2npm_A 14-3-3 domain containin 32.8 14 0.00047 30.8 1.1 28 3-32 172-199 (260)
90 2kj6_A Tubulin folding cofacto 26.4 52 0.0018 22.8 3.0 39 45-83 49-94 (97)
91 2kzr_A Ubiquitin thioesterase 26.0 41 0.0014 22.1 2.3 64 21-95 16-84 (86)
92 3kyd_D Small ubiquitin-related 23.0 95 0.0033 22.6 4.0 41 47-88 75-115 (115)
93 2zet_C Melanophilin; complex, 22.7 77 0.0026 24.1 3.6 35 88-123 4-41 (153)
94 3e8t_A Takeout 1, takeout-like 21.5 21 0.00071 27.4 0.1 27 4-30 17-44 (220)
95 1wf9_A NPL4 family protein; be 21.3 93 0.0032 21.4 3.5 38 47-85 42-94 (107)
96 2rck_A JuvenIle hormone bindin 20.6 23 0.0008 27.8 0.3 28 3-30 18-46 (225)
No 1
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=94.56 E-value=0.028 Score=38.68 Aligned_cols=45 Identities=20% Similarity=0.307 Sum_probs=35.2
Q ss_pred cccCCceeEeeecccccccchhhhhcCCCccceEEEEecccCCCCC
Q psy6853 47 VIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGSGAP 92 (154)
Q Consensus 47 vi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g~GaP 92 (154)
-++++.-.|-|+||.|..+++|++| |-.+-+.|.|-+.+...++|
T Consensus 38 gip~~~qrLi~~Gk~L~D~~tL~~y-gI~~g~~i~l~~~~~~~~~~ 82 (95)
T 1uel_A 38 AFPVAGQKLIYAGKILNDDTALKEY-KIDEKNFVVVMVTKPKAVST 82 (95)
T ss_dssp TCCTTTEEEEETTEECCTTSBGGGG-TCCSSSEEEEEESSCCCCCC
T ss_pred CCChhhEEEEECCEECCCcCcHHHC-CCCCCCEEEEEEeCCCCCCC
Confidence 4578889999999999999999999 44555677776766655555
No 2
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=94.17 E-value=0.016 Score=39.44 Aligned_cols=67 Identities=22% Similarity=0.302 Sum_probs=41.6
Q ss_pred cCCCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccCCCCCC
Q psy6853 19 PMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGSGAPS 93 (154)
Q Consensus 19 PmgLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g~GaP~ 93 (154)
+..+++.|.|.-.=+--++ ..-++++.-.|.|+||.|..+++|++| |-.+-+.|.+=+..+|.+.|.
T Consensus 14 ~l~v~~~~TV~~LK~~I~~-------~~gip~~~qrLi~~Gk~L~D~~tL~~~-~i~~g~~l~l~~rl~Gg~~~~ 80 (88)
T 4fbj_B 14 EIDIEPTDKVERIKERVEE-------KEGIPPQQQRLIYSGKQMNDEKTAADY-KILGGSVLHLVLALRGGGGLR 80 (88)
T ss_dssp EEECCTTCBHHHHHHHHHH-------HHCCCGGGCEEEETTEECCTTSBTTTT-TCCTTCEEEEECBCC------
T ss_pred EEEECCCCCHHHHHHHHHH-------HHCcChhHEEEEECCeECCCCCcHHHc-CCCCCCEEEEEEECCCCCCCC
Confidence 3356667776422222222 233577888999999999999999999 444556677777777776653
No 3
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=93.76 E-value=0.016 Score=40.54 Aligned_cols=53 Identities=9% Similarity=0.158 Sum_probs=37.4
Q ss_pred cccccCCceeEeeeccccccc-chhhhhcCCCccceEEEEecccCC-CCCCCCCCC
Q psy6853 45 KEVIEPSMGALWFAGKAMHRD-KFVRDFLGKNEKCKAIVKISKIGS-GAPSREPVM 98 (154)
Q Consensus 45 ~evi~~~~a~LW~aGKel~r~-k~l~dYiGkNEKTKiivKl~k~g~-GaP~REp~i 98 (154)
..-|.++.-.|.+.||.|..+ ++|.+| |-.+-..|+|.+..+|. .+|++.|.|
T Consensus 44 ~~gip~~~qrL~~~gk~L~D~~~tL~~y-gI~~g~~l~l~~~~~gg~~~~~~~~~~ 98 (102)
T 1v5o_A 44 ESGVPAEEAQIVYMEQLLTDDHCSLGSY-GLKDGDMVVLLQKDNVGLRTPGRTPSG 98 (102)
T ss_dssp HTCCCGGGBCEEETTEEECCSSSBHHHH-TCCTTEEEEECBCCCCCCSSCCCCCCC
T ss_pred HHCcChHHeEEEECCEECCCCcccHHHC-CCCCCCEEEEEECCCCCCCCCCCCCCC
Confidence 344678888999999999887 689999 33445668887776555 344454544
No 4
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=93.28 E-value=0.033 Score=36.45 Aligned_cols=64 Identities=22% Similarity=0.330 Sum_probs=39.7
Q ss_pred cCCCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccCCC
Q psy6853 19 PMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGSG 90 (154)
Q Consensus 19 PmgLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g~G 90 (154)
+..+++.+.|...-+--+ ...-++++.-.|.|.||.|..+++|++| |-.+-+.|.|-+..+|.+
T Consensus 17 ~~~v~~~~tV~~lK~~i~-------~~~~ip~~~qrL~~~g~~L~d~~tL~~~-~i~~~~~i~l~~rl~GG~ 80 (85)
T 3n3k_B 17 ILEVEPSDTIENVKAKIQ-------DKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIHNHSALYLLLKLRGGG 80 (85)
T ss_dssp EEECCTTCBHHHHHHHHH-------HHHCCCGGGEEEEETBEECCTTCBTTTT-TCCTTCEEEEEECCC---
T ss_pred EEEECCCCcHHHHHHHHH-------HHHCCCHHHEEEEECCeECCCCCCHHHC-CCCCCCEEEEEEeccCCC
Confidence 345666677653322222 2334678888999999999999999999 333344555555555544
No 5
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=92.38 E-value=0.14 Score=34.08 Aligned_cols=46 Identities=15% Similarity=0.207 Sum_probs=34.2
Q ss_pred ccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccCCCCCC
Q psy6853 46 EVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGSGAPS 93 (154)
Q Consensus 46 evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g~GaP~ 93 (154)
.-++++.-.|.|.||.|..+++|.+| |-.+-+.|.+-+..+| |+|+
T Consensus 43 ~gip~~~qrL~~~gk~L~d~~tL~~~-~i~~g~~i~l~~~~~g-G~~~ 88 (89)
T 1wy8_A 43 FDVRPECQRLFYRGKQLENGYTLFDY-DVGLNDIIQLLVRPDS-GPSS 88 (89)
T ss_dssp SCCCTTTEEEEETTEECCSSSBHHHH-TCCTTCEEEEEECCCC-SSCC
T ss_pred HCcChhhEEEEECCeECCCCCCHHHC-CCCCCCEEEEEEeCCC-CCCC
Confidence 34578889999999999999999999 3334456666666665 4553
No 6
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=92.23 E-value=0.061 Score=38.00 Aligned_cols=63 Identities=19% Similarity=0.246 Sum_probs=41.0
Q ss_pred ecCCCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccC
Q psy6853 18 YPMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIG 88 (154)
Q Consensus 18 yPmgLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g 88 (154)
|...+++.|.|.-.=+--++.. -++++.-.|.|.||.|..+++|++| |-.+-+.|.+=+.+..
T Consensus 14 ~~l~v~~~~TV~~LK~~I~~~~-------gip~~~QrLi~~Gk~L~D~~tL~~~-~i~~g~~i~lv~~~~~ 76 (106)
T 3m62_B 14 VPLDLEPSNTILETKTKLAQSI-------SCEESQIKLIYSGKVLQDSKTVSEC-GLKDGDQVVFMVSQKK 76 (106)
T ss_dssp EEECCCTTSBHHHHHHHHHHTT-------TSCGGGCEEEETTEECCTTSBTTTT-TCCTTCEEEEECCC--
T ss_pred EEEEECCCCcHHHHHHHHHHHH-------CCChhhEEEEECCEECCCcCCHHHc-CCCCCCEEEEEEcCCC
Confidence 3445777777753222222222 3577788999999999999999999 4444556766666544
No 7
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=92.20 E-value=0.19 Score=34.06 Aligned_cols=44 Identities=16% Similarity=0.222 Sum_probs=33.6
Q ss_pred cccCCceeEeeecccccccchhhhhc-CCCccceEEEEecccCCC
Q psy6853 47 VIEPSMGALWFAGKAMHRDKFVRDFL-GKNEKCKAIVKISKIGSG 90 (154)
Q Consensus 47 vi~~~~a~LW~aGKel~r~k~l~dYi-GkNEKTKiivKl~k~g~G 90 (154)
-++++.-.|-|+||.|..+++|++|+ |-.+-+.|.+=+..+|.+
T Consensus 46 ~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~~~gg~ 90 (93)
T 1wgd_A 46 RPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCNVKSGP 90 (93)
T ss_dssp CCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECCCCCCC
T ss_pred CCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeCCCCCC
Confidence 46788899999999999999999997 444555666655555543
No 8
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=91.67 E-value=0.08 Score=35.71 Aligned_cols=64 Identities=20% Similarity=0.295 Sum_probs=40.1
Q ss_pred CCCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccCCCC
Q psy6853 20 MNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGSGA 91 (154)
Q Consensus 20 mgLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g~Ga 91 (154)
..+++.+.|.-.-+--+ ...-++++.-.|.|.|+.|..+++|++| |-.+-+.|.|=+..+|.+.
T Consensus 16 ~~v~~~~TV~~LK~~i~-------~~~gip~~~qrL~~~G~~L~d~~tL~~~-~i~~~~~i~l~~r~~gG~~ 79 (96)
T 3k9o_B 16 LEVEPSDTIENVKAKIQ-------DKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRLRGYAD 79 (96)
T ss_dssp EECCTTCBHHHHHHHHH-------HHHCCCGGGEEEEETTEECCTTSBTGGG-TCCTTCEEEEEECCCC---
T ss_pred EEECCCCCHHHHHHHHH-------hhhCCChhHEEEEECCEECCCCCcHHHc-CCCCCCEEEEEEEcCCCCc
Confidence 34566666643222222 2233577888999999999999999999 3344456666666666443
No 9
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=91.34 E-value=0.12 Score=35.07 Aligned_cols=47 Identities=13% Similarity=0.131 Sum_probs=35.9
Q ss_pred ccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccCCCCCC
Q psy6853 46 EVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGSGAPS 93 (154)
Q Consensus 46 evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g~GaP~ 93 (154)
.-++++.-.|.|.||.|..+++|.+| |-.+-+.|.+=+..+|.++|.
T Consensus 50 ~gip~~~qrL~~~Gk~L~D~~tL~~~-gi~~g~~i~l~~~~~~g~~~~ 96 (96)
T 1wx8_A 50 LHCNADRLVLIFTGKILRDQDILSQR-GILDGSTVHVVVRSHSGPSSG 96 (96)
T ss_dssp TCSCTTTBCCEETTEECCTTSCHHHH-TCCTTEEEECCBCCSSCSSCC
T ss_pred hCCCHHHEEEEECCEECCCcCCHHHC-CCCCCCEEEEEEeCCCCCCCC
Confidence 34578888999999999999999999 334445677767777776663
No 10
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=90.91 E-value=0.17 Score=35.48 Aligned_cols=46 Identities=15% Similarity=0.238 Sum_probs=33.3
Q ss_pred ccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccCCCCC
Q psy6853 46 EVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGSGAP 92 (154)
Q Consensus 46 evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g~GaP 92 (154)
.-+.++.-.|.|.||.|..+++|.+| |-.+-+.|.|-+.+...+|+
T Consensus 57 ~gip~~~qrLi~~Gk~L~D~~tL~~y-gI~~g~ti~lv~~~~~~~~~ 102 (106)
T 1ttn_A 57 EGVEPGSQRWFFSGRPLTDKMKFEEL-KIPKDYVVQVIVSQPVQNPT 102 (106)
T ss_dssp TCCCSTTCEEEETTEECCTTSHHHHC-CCSSSCEEEEECCCSSCC--
T ss_pred HCcCcccEEEEECCEECCCCCcHHHc-CCCCCCEEEEEEeCCCCCCC
Confidence 34578888999999999999999999 33344567776766655544
No 11
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=90.73 E-value=0.17 Score=35.01 Aligned_cols=44 Identities=18% Similarity=0.333 Sum_probs=32.6
Q ss_pred ccccCCceeEeeeccccccc-chhhhhcCCCccceEEEEecccCCC
Q psy6853 46 EVIEPSMGALWFAGKAMHRD-KFVRDFLGKNEKCKAIVKISKIGSG 90 (154)
Q Consensus 46 evi~~~~a~LW~aGKel~r~-k~l~dYiGkNEKTKiivKl~k~g~G 90 (154)
+-++++.-.|-|+||.|..+ ++|++| |-.+-+.|.+=+..+|.+
T Consensus 48 ~gip~~~QrLi~~Gk~L~D~~~tL~~y-gI~~gstl~lv~r~~gg~ 92 (94)
T 2kan_A 48 ENTPIKRMQLYYSGIELADDYRNLNEY-GITEFSEIVVFLKSINRA 92 (94)
T ss_dssp SSSCTTTEEEEETTEEECCTTSBHHHH-TCCTTEEEEEEECCCSSC
T ss_pred HCcCHHHEEEEECCEECCCCcccHHHC-CCCCCCEEEEEEeCCCCC
Confidence 34588899999999999999 999999 333445566666666554
No 12
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=90.64 E-value=0.12 Score=32.70 Aligned_cols=61 Identities=23% Similarity=0.293 Sum_probs=38.6
Q ss_pred CCCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccC
Q psy6853 20 MNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIG 88 (154)
Q Consensus 20 mgLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g 88 (154)
..+++.+.|.-.-+--+ ...-++++.-.|-|.||.|..+++|++| |-.+-+.|.+-+..+|
T Consensus 15 ~~v~~~~tv~~lK~~i~-------~~~~i~~~~q~L~~~g~~L~d~~tL~~~-~i~~g~~i~l~~~~~G 75 (76)
T 1ndd_A 15 IDIEPTDKVERIKERVE-------EKEGIPPQQQRLIYSGKQMNDEKTAADY-KILGGSVLHLVLALRG 75 (76)
T ss_dssp EECCTTCBHHHHHHHHH-------HHHCCCGGGEEEEETTEECCTTSBGGGG-TCCTTCEEEEEECCC-
T ss_pred EEECCCChHHHHHHHHH-------HHHCcChHHEEEEECCEECCCCCcHHHc-CCCCCCEEEEEEeCCC
Confidence 34566677653222222 2233578888999999999999999999 3334445665555444
No 13
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=90.21 E-value=0.15 Score=32.20 Aligned_cols=60 Identities=22% Similarity=0.348 Sum_probs=38.5
Q ss_pred CCCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhh-cCCCccceEEEEecccC
Q psy6853 20 MNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDF-LGKNEKCKAIVKISKIG 88 (154)
Q Consensus 20 mgLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dY-iGkNEKTKiivKl~k~g 88 (154)
..+++.+.|.-.-+--+ ...-++++.-.|.|.||.|..+++|++| +.. -+.|.|-+..+|
T Consensus 15 i~v~~~~tv~~lK~~i~-------~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~--g~~i~l~~~~~G 75 (76)
T 3a9j_A 15 LEVEPSDTIENVKAKIQ-------DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQR--ESTLHLVLRLRG 75 (76)
T ss_dssp EECCTTCBHHHHHHHHH-------HHHCCCGGGEEEEETTEECCTTCBTGGGTCCT--TCEEEEEECCCC
T ss_pred EEECCCCcHHHHHHHHH-------HHHCcCHHHeEEEECCeECCCCCcHHHcCCCC--CCEEEEEEeCCC
Confidence 34566666642222222 2223578889999999999999999999 443 345665555554
No 14
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=90.07 E-value=0.1 Score=35.36 Aligned_cols=62 Identities=21% Similarity=0.310 Sum_probs=37.7
Q ss_pred CCCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccCC
Q psy6853 20 MNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGS 89 (154)
Q Consensus 20 mgLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g~ 89 (154)
..+++.+.|...-+--+ ...-++++.-.|.|.||.|..+++|++| |-.+-+.|.+-+..+|.
T Consensus 24 l~v~~~~TV~~LK~~I~-------~~~gip~~~qrL~~~Gk~L~D~~tL~~~-gi~~g~~i~l~~r~~GG 85 (88)
T 1sif_A 24 VEMEPSDTIENLKAKIQ-------DKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRLRGG 85 (88)
T ss_dssp EECCTTSBHHHHHHHHH-------HHHCCCGGGCEEEETTEECCTTSBSGGG-TCCTTCEEEEEC-----
T ss_pred EEECCCChHHHHHHHHH-------HHHCcChhhEEEEECCEECCCCCcHHHc-CCCCCCEEEEEEeCCCC
Confidence 34566666642222222 2233578888999999999999999999 33344567776666664
No 15
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=89.73 E-value=0.38 Score=33.49 Aligned_cols=42 Identities=19% Similarity=0.206 Sum_probs=30.0
Q ss_pred ccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccC
Q psy6853 46 EVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIG 88 (154)
Q Consensus 46 evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g 88 (154)
.-|.++.-.|-|.||.|..+++|.+| |-.+-+.|.|-+..+|
T Consensus 50 ~gip~~~qrLi~~Gk~L~D~~tL~~~-gi~~g~~i~l~~~~~~ 91 (106)
T 1wx7_A 50 FKAHPDQLVLIFAGKILKDPDSLAQC-GVRDGLTVHLVIKRQH 91 (106)
T ss_dssp HTCCTTTEEEEETTEECCTTSCHHHH-TCCTTEEEEEEECCCC
T ss_pred HCcChhhEEEEECCEECCCcCcHHHc-CCCCCCEEEEEEcCCC
Confidence 34678889999999999999999999 2233345555444443
No 16
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=89.40 E-value=0.14 Score=34.60 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=29.9
Q ss_pred ccccCCceeEeeecccccccchhhhh-cCCCccceEEEEecccCCC
Q psy6853 46 EVIEPSMGALWFAGKAMHRDKFVRDF-LGKNEKCKAIVKISKIGSG 90 (154)
Q Consensus 46 evi~~~~a~LW~aGKel~r~k~l~dY-iGkNEKTKiivKl~k~g~G 90 (154)
.-++++.-.|.|+||.|..+++|++| +. +-+.|.+-+..+|.+
T Consensus 38 ~gip~~~qrL~~~Gk~L~D~~tL~~~~I~--~g~~i~l~~~~~gg~ 81 (88)
T 2hj8_A 38 EGVQDDLFWLTFEGKPLEDQLPLGEYGLK--PLSTVFMNLRLRGGL 81 (88)
T ss_dssp TCSCTTTEEEESSSSCCCTTSBHHHHHCS--TTCEEEEEEC-----
T ss_pred hCCChhHEEEEECCEECCCCCcHHHcCCC--CCCEEEEEEEcCCCc
Confidence 34688889999999999999999999 43 334566666655543
No 17
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=89.33 E-value=0.24 Score=34.80 Aligned_cols=64 Identities=11% Similarity=0.129 Sum_probs=46.3
Q ss_pred CCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccCCCCCCC
Q psy6853 23 PTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGSGAPSR 94 (154)
Q Consensus 23 P~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g~GaP~R 94 (154)
-+.+|++..++.-.+ .+-++++...|.|.|+.|..+.++.+| +-.+-..|-|-++++|.++|.+
T Consensus 25 ~~~t~l~kl~~~y~~-------~~gi~~~~~rf~FdG~~l~~~~Tp~dl-~medgD~Idv~~~~~GG~~~~~ 88 (94)
T 2io1_B 25 KRHTPLSKLMKAYCE-------RQGLSMRQIRFRFDGQPINETDTPAQL-EMEDEDTIDVFQQQTGGVPESS 88 (94)
T ss_dssp ETTSCTHHHHHHHHH-------HHTCCGGGEEEEETTEECCTTCCTTTT-TCCTTCEEEEEECCEESCCC--
T ss_pred CCCCHHHHHHHHHHH-------HhCCCcccEEEEECCEEcCCCCCHHHc-CCCCCCEEEEEEeccCCCccce
Confidence 455666655544332 333577899999999999999999999 4555566888899999888754
No 18
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=89.15 E-value=0.15 Score=33.11 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=28.2
Q ss_pred ccccCCceeEeeecccccccchhhhh-cCCCccceEEEE
Q psy6853 46 EVIEPSMGALWFAGKAMHRDKFVRDF-LGKNEKCKAIVK 83 (154)
Q Consensus 46 evi~~~~a~LW~aGKel~r~k~l~dY-iGkNEKTKiivK 83 (154)
.-++++.-.|.|+||.|..+++|++| +..+..--++++
T Consensus 38 ~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~r 76 (79)
T 3phx_B 38 EGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLR 76 (79)
T ss_dssp HTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred cCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence 34577888999999999999999999 544443334433
No 19
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=89.15 E-value=0.13 Score=37.63 Aligned_cols=45 Identities=18% Similarity=0.290 Sum_probs=32.1
Q ss_pred cccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccCCC
Q psy6853 45 KEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGSG 90 (154)
Q Consensus 45 ~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g~G 90 (154)
.+-++++.-.|.|+|+.|..+++|++| |-.+-+.|.+=+.-+|.|
T Consensus 114 ~~gip~~~q~L~~~G~~L~d~~tL~~y-~i~~g~~l~l~~rl~GG~ 158 (159)
T 3rt3_B 114 LEGVQDDLFWLTFEGKPLEDQLPLGEY-GLKPLSTVFMNLRLRGGG 158 (159)
T ss_dssp HHTCCGGGEEEEETTEECCTTSBGGGG-TCCTTCEEEEEECCC---
T ss_pred HHCCCHHHEEEEECCeecCCCCCHHHc-CCCCCCEEEEEEecCCCC
Confidence 345688889999999999999999999 334444566666666665
No 20
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=89.01 E-value=0.26 Score=32.88 Aligned_cols=27 Identities=19% Similarity=0.444 Sum_probs=23.6
Q ss_pred ccccCCceeEeeecccccccchhhhh-c
Q psy6853 46 EVIEPSMGALWFAGKAMHRDKFVRDF-L 72 (154)
Q Consensus 46 evi~~~~a~LW~aGKel~r~k~l~dY-i 72 (154)
.-++++.-.|.|+||.|..+++|++| +
T Consensus 39 ~gip~~~qrLi~~Gk~L~d~~tL~~~~i 66 (90)
T 4dwf_A 39 VSIPSEKQRLIYQGRVLQDDKKLQEYNV 66 (90)
T ss_dssp HTCCGGGEEEEETTEECCTTSBGGGGTC
T ss_pred hCCCHHHEEEEECCeECCCCCCHHHcCC
Confidence 34577888999999999999999999 5
No 21
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=88.87 E-value=0.11 Score=34.22 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=30.5
Q ss_pred cccCCceeEeeecccccccchhhhhcCCCccceEEEEecccC
Q psy6853 47 VIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIG 88 (154)
Q Consensus 47 vi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g 88 (154)
-++++.-.|.|.||.|..+++|++| |-.+-+.|.|=+.-+|
T Consensus 47 gip~~~qrL~~~G~~L~d~~tL~~~-~i~~~~~i~l~~rl~G 87 (88)
T 3dbh_I 47 GIPPQQQRLIYSGKQMNDEKTAADY-KILGGSVLHLVLRLRG 87 (88)
T ss_dssp CCCGGGCCEEETTEECCTTSBGGGG-TCCTTCEEEECCCCCC
T ss_pred CcCHHHEEEEECCeECCCCCcHHHc-CCCCCCEEEEEEeCCC
Confidence 3577888999999999999999999 3344455665554444
No 22
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=88.69 E-value=0.15 Score=33.10 Aligned_cols=43 Identities=23% Similarity=0.388 Sum_probs=30.7
Q ss_pred cccCCceeEeeecccccccchhhhhcCCCccceEEEEecccCCC
Q psy6853 47 VIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGSG 90 (154)
Q Consensus 47 vi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g~G 90 (154)
-++++.-.|.|.||.|..+++|++| |-.+-+.|.|=+..+|.+
T Consensus 38 ~i~~~~qrL~~~g~~L~d~~tL~~~-~i~~~~~l~l~~r~~GG~ 80 (85)
T 3mtn_B 38 GIPPDQQRLIFAGKQLEDGRTLSDY-NIQKWSTLFLLLRLRGGG 80 (85)
T ss_dssp CCCGGGCEEEETTEECCTTSBTGGG-TCCTTCEEEEECCCCCC-
T ss_pred CcChHHEEEEECCEECCCCCCHHHc-CCCCCCEEEEEEECcCCC
Confidence 4577888999999999999999999 333344555555555543
No 23
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=88.65 E-value=0.41 Score=34.95 Aligned_cols=48 Identities=15% Similarity=0.138 Sum_probs=30.5
Q ss_pred ccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccCCCCCCC
Q psy6853 46 EVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGSGAPSR 94 (154)
Q Consensus 46 evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g~GaP~R 94 (154)
.-|.++.-.|-|.||.|..+++|.+| |-.+-+.|.|=+..+|.++++.
T Consensus 65 ~gip~~~QrLi~~Gk~L~D~~tL~dy-gI~~gstI~lv~~~~gg~~~~~ 112 (125)
T 1j8c_A 65 FKSQTDQLVLIFAGKILKDQDTLIQH-GIHDGLTVHLVIKRDPNSSSVD 112 (125)
T ss_dssp HCSCSSSEEEEETTEEESTTSCGGGT-TCSSSEEEEEEEC---------
T ss_pred HCcCcceEEEEECCEEcCCCCCHHHc-CCCCCCEEEEEeccCCCCCCcc
Confidence 34678889999999999999999999 3334466777676666655543
No 24
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=88.18 E-value=0.63 Score=35.01 Aligned_cols=44 Identities=23% Similarity=0.112 Sum_probs=33.3
Q ss_pred ccccC--CceeEeeecccccccchhhhh-cCCCcc----ceEEEEecccCC
Q psy6853 46 EVIEP--SMGALWFAGKAMHRDKFVRDF-LGKNEK----CKAIVKISKIGS 89 (154)
Q Consensus 46 evi~~--~~a~LW~aGKel~r~k~l~dY-iGkNEK----TKiivKl~k~g~ 89 (154)
+.|++ +.-.|=|+||.|.++++|++| |-.++- +.+-+-++.+|.
T Consensus 56 egiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~tmhlVlrl~g~ 106 (126)
T 1se9_A 56 ENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTTMHVIIQAPVT 106 (126)
T ss_dssp SSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEEEEEEECCCSS
T ss_pred ccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEEEEEEeccCCc
Confidence 34454 678899999999999999999 555544 667777776654
No 25
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=87.78 E-value=0.098 Score=33.63 Aligned_cols=56 Identities=16% Similarity=0.229 Sum_probs=36.6
Q ss_pred CCCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhh-cCCCccceEEE
Q psy6853 20 MNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDF-LGKNEKCKAIV 82 (154)
Q Consensus 20 mgLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dY-iGkNEKTKiiv 82 (154)
..+++.+.| ++|...-+...-++++.-.|-++||.|..+++|++| +..+..--+++
T Consensus 15 ~~v~~~~tV-------~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~ 71 (76)
T 3b1l_X 15 VEVDSDTSI-------LQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQ 71 (76)
Confidence 345555555 333333333444678888999999999999999999 55444333333
No 26
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=87.88 E-value=0.57 Score=32.42 Aligned_cols=59 Identities=19% Similarity=0.197 Sum_probs=39.1
Q ss_pred CCCCCchhhhhhccc-ccccCcccccccccCCceeEeeecccccccchhhhhcCCCccceEEEEecc
Q psy6853 21 NLPTHDPIRLEFENR-EDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISK 86 (154)
Q Consensus 21 gLP~~Dpir~elen~-edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k 86 (154)
.+++-|.|.-.=+-- ++. +-++++.-.|.|+||.|..+.+|++|-=+.+.+.|.|=+++
T Consensus 19 ~v~~~~TV~~lK~~I~~~~-------~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 19 DFSPSDTILQIKQHLISEE-------KASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp ECCTTCBHHHHHHHHHHTT-------SCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred cCCCCCcHHHHHHHHHHHh-------cCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 356777775322222 333 33689999999999999999999999322344566665543
No 27
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=87.71 E-value=0.32 Score=33.25 Aligned_cols=61 Identities=15% Similarity=0.173 Sum_probs=38.9
Q ss_pred CCCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccC
Q psy6853 20 MNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIG 88 (154)
Q Consensus 20 mgLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g 88 (154)
..+++.+.|...-+--+ ...-++++.-.|.|+||.|..+++|.+| |-.+-+.|.+=+.-+|
T Consensus 32 l~v~~~~TV~~LK~~I~-------~~~gip~~~qrLi~~Gk~L~D~~tL~~y-~I~~gstI~lv~rl~G 92 (93)
T 2l7r_A 32 FEVTGQETVAQIKAHVA-------SLEGIAPEDQVVLLAGAPLEDEATLGQC-GVEALTTLEVAGRMLG 92 (93)
T ss_dssp EECCSSCBHHHHHHHHH-------HHHTCCGGGCEEEETTEECCTTSBHHHH-TCCSSCEEEEECCCCC
T ss_pred EEeCCCCcHHHHHHHHH-------HHhCcChhHEEEEECCEECCCCCcHHHC-CCCCCCEEEEEEecCC
Confidence 34566666643222222 2233578888999999999999999999 3334455655555444
No 28
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=87.62 E-value=0.9 Score=30.67 Aligned_cols=44 Identities=14% Similarity=0.246 Sum_probs=33.6
Q ss_pred CCceeEeeeccccccc-chhhhhcCCCccceEEEEecccCCCCCCC
Q psy6853 50 PSMGALWFAGKAMHRD-KFVRDFLGKNEKCKAIVKISKIGSGAPSR 94 (154)
Q Consensus 50 ~~~a~LW~aGKel~r~-k~l~dYiGkNEKTKiivKl~k~g~GaP~R 94 (154)
++.-.|-|.||.|..+ ++|.+| |-.+-+.|.|=+.+.+..+|+.
T Consensus 42 ~~~qrLi~~Gk~L~D~~~tL~~y-~i~~g~~i~l~~~~~~~~~~~~ 86 (95)
T 1wia_A 42 ESQMKLIYQGRLLQDPARTLSSL-NITNNCVIHCHRSPPGAAVSGP 86 (95)
T ss_dssp TTTCEEEETTEECCCSSCBTTTT-TCCTTEEEEEECCCCCCCCCCC
T ss_pred cCcEEEEECCEEccCCcCCHHHc-CCCCCCEEEEEECCCCCCCCCC
Confidence 7788899999999999 999999 4445566777777666655543
No 29
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=87.30 E-value=0.59 Score=30.23 Aligned_cols=41 Identities=10% Similarity=0.159 Sum_probs=30.5
Q ss_pred ccccCCceeEeeecccccccchhhhh-cCCCccceEEEEecccC
Q psy6853 46 EVIEPSMGALWFAGKAMHRDKFVRDF-LGKNEKCKAIVKISKIG 88 (154)
Q Consensus 46 evi~~~~a~LW~aGKel~r~k~l~dY-iGkNEKTKiivKl~k~g 88 (154)
+-++++.-.|.|+|+.|..+++|++| +..+ +.|.+=+..+|
T Consensus 37 ~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~--~~i~l~~~~~G 78 (79)
T 2uyz_B 37 QGVPMNSLRFLFEGQRIADNHTPKELGMEEE--DVIEVYQEQTG 78 (79)
T ss_dssp HTCCGGGEEEEETTEECCTTCCHHHHTCCTT--EEEEEEECCCC
T ss_pred HCCCcccEEEEECCEEeCCCCCHHHcCCCCC--CEEEEEEeccC
Confidence 34678889999999999999999999 4433 34555555554
No 30
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=86.90 E-value=0.34 Score=33.00 Aligned_cols=42 Identities=21% Similarity=0.360 Sum_probs=31.4
Q ss_pred cccCCceeEeeecccccccchhhhhcCCCccceEEEEecccCC
Q psy6853 47 VIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGS 89 (154)
Q Consensus 47 vi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g~ 89 (154)
-++++.-.|.|.||.|..+++|++| |-.+-+.|.+-+..+|.
T Consensus 35 gi~~~~qrL~~~Gk~L~D~~tL~~~-gi~~g~~i~l~~~~~gG 76 (98)
T 1yx5_B 35 GIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRLRGG 76 (98)
T ss_dssp CCCGGGEEEEETTEECCTTSBTGGG-TCCTTCEEEEEECCCCC
T ss_pred CcChhhEEEEECCEECCCCCCHHHc-CCCCCCEEEEEEeCCCC
Confidence 3578888999999999999999999 33344556665655543
No 31
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=86.34 E-value=0.77 Score=29.88 Aligned_cols=39 Identities=28% Similarity=0.399 Sum_probs=29.4
Q ss_pred cccCCceeEeeecccccccchhhhhcCCCccceEEEEecc
Q psy6853 47 VIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISK 86 (154)
Q Consensus 47 vi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k 86 (154)
-++++.-.|-|+||.|..+++|++| |-.+-+.|.|-+.+
T Consensus 43 gip~~~qrLi~~Gk~L~D~~tL~~~-~i~~g~~i~l~~~~ 81 (85)
T 2wyq_A 43 AFPVAGQKLIYAGKILSDDVPIRDY-RIDEKNFVVVMVTK 81 (85)
T ss_dssp TCCGGGEEEEETTEECCTTSBGGGG-CCCTTSEEEEEEC-
T ss_pred CCCHHHeEEEECCEECcCCCCHHHc-CCCCCCEEEEEEcC
Confidence 3578888999999999999999999 44445566665543
No 32
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=86.29 E-value=0.98 Score=33.17 Aligned_cols=45 Identities=9% Similarity=0.126 Sum_probs=31.1
Q ss_pred ccCCceeEeeecccccccchhhhhcCCCccceEEEEecccCCCCCC
Q psy6853 48 IEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGSGAPS 93 (154)
Q Consensus 48 i~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g~GaP~ 93 (154)
+.++.-.|-|+||.|..+.+|++| |-.+..-++|=|--+..+|++
T Consensus 60 ~p~~qqrLIy~GK~LeD~~TL~~y-~I~~~~~~tlhLvlr~~~~~~ 104 (116)
T 1wgh_A 60 SSPNILRLIYQGRFLHGNVTLGAL-KLPFGKTTVMHLVARETLPEP 104 (116)
T ss_dssp CCTTTEEEEETTEEECSSCBTTTT-TCCSSCEEEEEEEECSSCSSS
T ss_pred CChHHEEEEECCcCCCCCCcHHHc-CCCCCCceEEEEEccCCCCCC
Confidence 468899999999999999999999 222222244445445555543
No 33
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=86.07 E-value=1 Score=29.55 Aligned_cols=42 Identities=14% Similarity=0.093 Sum_probs=31.8
Q ss_pred cccCCceeEeeecccccccchhhhhcCCCccceEEEEecccCC
Q psy6853 47 VIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGS 89 (154)
Q Consensus 47 vi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g~ 89 (154)
-++++.-.|.|.||.|..+++|++| |-.+-+.|.+-+..+|.
T Consensus 42 gi~~~~qrL~~~Gk~L~d~~tL~~~-~i~~g~~i~l~~~~~GG 83 (87)
T 1wh3_A 42 GLPKKQQQLEFQGQVLQDWLGLGIY-GIQDSDTLILSKKKGSG 83 (87)
T ss_dssp CCCTTTEEEEETTEECCSSSBHHHH-TCCTTEEEEEEECSCCC
T ss_pred CCChHHEEEEECCEEccCCCCHHHC-CCCCCCEEEEEEeccCC
Confidence 3678889999999999999999999 33344566666665553
No 34
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=86.01 E-value=0.26 Score=31.44 Aligned_cols=57 Identities=12% Similarity=0.185 Sum_probs=36.9
Q ss_pred CCCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhhcCCCccceEEEEe
Q psy6853 20 MNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKI 84 (154)
Q Consensus 20 mgLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl 84 (154)
..+++.+.|.- |...-+...-++++.-.|-|.||.|..+++|++| |-.+-+.|.|..
T Consensus 18 ~~v~~~~tV~~-------LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~-~i~~g~~i~l~~ 74 (77)
T 2bwf_A 18 VNVAPESTVLQ-------FKEAINKANGIPVANQRLIYSGKILKDDQTVESY-HIQDGHSVHLVK 74 (77)
T ss_dssp EEECTTCBHHH-------HHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGG-TCCTTCEEEEEE
T ss_pred EEECCCCcHHH-------HHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHc-CCCCCCEEEEEE
Confidence 34556666642 2222222334578888999999999999999999 333445676654
No 35
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=85.95 E-value=0.35 Score=34.03 Aligned_cols=46 Identities=4% Similarity=-0.049 Sum_probs=34.2
Q ss_pred ccccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccCCC
Q psy6853 44 SKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGSG 90 (154)
Q Consensus 44 ~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g~G 90 (154)
...-|+++.-.|.|.||.|..+++|++| |-.+-+.|.|-+..+|..
T Consensus 63 ~~~gip~~~QrL~~~Gk~L~D~~tL~~y-~I~~g~~l~l~~r~~GGk 108 (111)
T 1we6_A 63 GEIQIPANKQKLSGKAGFLKDNMSLAHY-NVGAGEILTLSLRERSGP 108 (111)
T ss_dssp HHTTCCTTTSEEECSSSBCCTTSBTTTT-TCSSSCEEEEECSSCCSS
T ss_pred HHHCCCHHHeEEEECCEECCCCCcHHHC-CCCCCCEEEEEEEcCCCC
Confidence 3344688889999999999999999999 223445677767667653
No 36
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=85.43 E-value=0.41 Score=34.22 Aligned_cols=63 Identities=21% Similarity=0.318 Sum_probs=41.5
Q ss_pred CCCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccCCC
Q psy6853 20 MNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGSG 90 (154)
Q Consensus 20 mgLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g~G 90 (154)
..+++.+.|...-+--+. ..-++++.-.|-|+||.|..+++|++| |-.+-+.|.|=+..+|..
T Consensus 24 l~v~~~~TV~~LK~~I~~-------~~gip~~~qrLi~~Gk~L~D~~tL~~y-gI~~gstI~l~~~~~GG~ 86 (114)
T 2kdi_A 24 LEVESSDTIDNVKSKIQD-------KEGIPPDQQRLIWAGKQLEDGRTLSDY-NIQRESTLHLVLRLRGGS 86 (114)
T ss_dssp EECCTTCBHHHHHHHHHH-------HHCCCGGGEEEEETTEECCTTCBTTTT-TCCSSCEEEEEECCCSSC
T ss_pred EEECCCCcHHHHHHHHHH-------HHCcChHHEEEEECCEECCCCCcHHHC-CCCCCCEEEEEEEcCCCc
Confidence 345666666432222222 233578888999999999999999999 333445676666666643
No 37
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=85.34 E-value=0.36 Score=33.17 Aligned_cols=41 Identities=22% Similarity=0.365 Sum_probs=30.5
Q ss_pred cccCCceeEeeecccccccchhhhhcCCCccceEEEEecccC
Q psy6853 47 VIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIG 88 (154)
Q Consensus 47 vi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g 88 (154)
-++++.-.|.|.||.|..+++|++| |-.+-+.|.+=+.-+|
T Consensus 57 gip~~~qrLi~~Gk~L~D~~tL~~~-~i~~g~~i~l~~rl~G 97 (98)
T 4hcn_B 57 GIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRLRG 97 (98)
T ss_dssp CCCGGGCEEEETTEECCTTCBSGGG-TCCTTEEEEEECBCSC
T ss_pred CCChhHEEEEECCEECCCCCcHHHC-CCCCCCEEEEEEecCC
Confidence 3677888999999999999999999 3344455655555444
No 38
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=85.01 E-value=0.88 Score=32.19 Aligned_cols=45 Identities=4% Similarity=0.001 Sum_probs=32.8
Q ss_pred cccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccCCC
Q psy6853 45 KEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGSG 90 (154)
Q Consensus 45 ~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g~G 90 (154)
..-|+++.-.|-|+|+.|..+++|++|-=+ +-+.|.+=+.-+|..
T Consensus 68 ~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~-~g~~i~lv~rl~GGk 112 (115)
T 1we7_A 68 ATGMPAGKQKLQYEGIFIKDSNSLAYYNMA-SGAVIHLALKERSGP 112 (115)
T ss_dssp HSSCCTTTEEEEETTEEECTTSBHHHHTCC-SSCEEEEEECCCSCC
T ss_pred HHCCChHHEEEEECCEECCCCCCHHHCCCC-CCCEEEEEEEcCCCC
Confidence 344688899999999999999999999222 334566656666643
No 39
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=84.60 E-value=0.49 Score=31.81 Aligned_cols=37 Identities=27% Similarity=0.491 Sum_probs=27.4
Q ss_pred ccccCCceeEeeecccccccchhhhh-cCCCccceEEE
Q psy6853 46 EVIEPSMGALWFAGKAMHRDKFVRDF-LGKNEKCKAIV 82 (154)
Q Consensus 46 evi~~~~a~LW~aGKel~r~k~l~dY-iGkNEKTKiiv 82 (154)
.-++++.-.|.|.||.|..+++|++| +..+..--+++
T Consensus 51 ~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~ 88 (91)
T 3v6c_B 51 EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 88 (91)
T ss_dssp HCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEEC
T ss_pred hCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEE
Confidence 34577888999999999999999999 54444333333
No 40
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=84.31 E-value=0.52 Score=36.00 Aligned_cols=62 Identities=21% Similarity=0.311 Sum_probs=40.1
Q ss_pred CCCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccCC
Q psy6853 20 MNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGS 89 (154)
Q Consensus 20 mgLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g~ 89 (154)
..+++.|.|.-.=+-- +...-++++.-.|.|+||.|..+++|++| |-.+-+.|.+=+..+|.
T Consensus 15 l~v~~~~TV~~LK~~I-------~~~~gip~~~QrLi~~Gk~L~D~~tL~~y-~I~~gstI~Lvlrl~GG 76 (169)
T 3l0w_B 15 LEVESSDTIDNVKSKI-------QDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRLRGG 76 (169)
T ss_dssp EECCTTCBHHHHHHHH-------HHHHCCCTTTEEEEETTEECCTTSBGGGG-TCCTTCEEEEEECCCC-
T ss_pred EEeCCCCCHHHHHHHH-------HHHHCcCHHHEEEEECCccccCcCcHHHc-CCCCCCEEEEEEEeccc
Confidence 3566677664222222 22334688889999999999999999999 44444555555555553
No 41
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=84.29 E-value=0.24 Score=32.02 Aligned_cols=26 Identities=27% Similarity=0.552 Sum_probs=23.0
Q ss_pred ccccCCceeEeeecccccccchhhhh
Q psy6853 46 EVIEPSMGALWFAGKAMHRDKFVRDF 71 (154)
Q Consensus 46 evi~~~~a~LW~aGKel~r~k~l~dY 71 (154)
.-++++.-.|.|+||.|..+++|++|
T Consensus 38 ~gip~~~qrL~~~g~~L~d~~tL~~~ 63 (78)
T 2faz_A 38 FHVEPGLQRLFYRGKQMEDGHTLFDY 63 (78)
T ss_dssp HCCCGGGEEEEETTEECCTTCBTTTT
T ss_pred HCcChhhEEEEECCEECCCCCCHHHc
Confidence 34578888999999999999999999
No 42
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=83.40 E-value=0.66 Score=32.94 Aligned_cols=41 Identities=22% Similarity=0.365 Sum_probs=32.4
Q ss_pred cccCCceeEeeecccccccchhhhhcCCCccceEEEEecccC
Q psy6853 47 VIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIG 88 (154)
Q Consensus 47 vi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g 88 (154)
-++++.-.|-|.||.|..+++|++| |-.+-+.|.+-+..+|
T Consensus 111 gi~~~~qrL~~~g~~L~d~~tL~~~-~i~~~~~i~l~~r~~G 151 (152)
T 3b08_A 111 GIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRLRG 151 (152)
T ss_dssp CCCGGGEEEEETTEECCTTSBTGGG-TCCTTCEEEEEECCCC
T ss_pred CcChhhEEEEECCEECCCCCCHHHc-CCCCCCEEEEEEecCC
Confidence 4678888999999999999999999 4445556777666665
No 43
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=83.38 E-value=1 Score=31.84 Aligned_cols=39 Identities=23% Similarity=0.271 Sum_probs=31.3
Q ss_pred cccCCceeEeeecccccccchhhhhcCC-CccceEEEEecc
Q psy6853 47 VIEPSMGALWFAGKAMHRDKFVRDFLGK-NEKCKAIVKISK 86 (154)
Q Consensus 47 vi~~~~a~LW~aGKel~r~k~l~dYiGk-NEKTKiivKl~k 86 (154)
-++++.-.|.|+||.|..+++|++| |- .+...|++=+++
T Consensus 57 gip~~~QrLi~~Gk~L~D~~tL~dy-~I~~~g~ti~lmvsk 96 (98)
T 4a20_A 57 ASHISEIKLLLKGKVLHDNLFLSDL-KVTPANSTITVMIKP 96 (98)
T ss_dssp CSCGGGEEEEETTEEECTTCBGGGS-CCBTTBCEEEEEECC
T ss_pred CCChhhEEEEECCEECcCcCCHHHc-CcCCCCCEEEEEEeC
Confidence 4688889999999999999999999 44 456667766654
No 44
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=82.98 E-value=1.3 Score=30.46 Aligned_cols=42 Identities=10% Similarity=0.177 Sum_probs=31.5
Q ss_pred cccccCCceeEeeecccccccchhhhh-cCCCccceEEEEecccC
Q psy6853 45 KEVIEPSMGALWFAGKAMHRDKFVRDF-LGKNEKCKAIVKISKIG 88 (154)
Q Consensus 45 ~evi~~~~a~LW~aGKel~r~k~l~dY-iGkNEKTKiivKl~k~g 88 (154)
.+-|+++.-.|.|+|+.|..+++|++| +..+ +.|.+=+..+|
T Consensus 54 ~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g--~~I~l~~~~~G 96 (97)
T 1wyw_B 54 RQGVPMNSLRFLFEGQRIADNHTPKELGMEEE--DVIEVYQEQTG 96 (97)
T ss_dssp HHTCCGGGEEEEETTEECCTTCCHHHHTCCTT--CEEEEEESSSC
T ss_pred HHCCChhhEEEEECCeEcCCCCCHHHCCCCCC--CEEEEEEecCC
Confidence 344678889999999999999999999 4433 34555555555
No 45
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=82.89 E-value=0.92 Score=31.56 Aligned_cols=40 Identities=20% Similarity=0.243 Sum_probs=29.1
Q ss_pred ccccCCceeEeeecccccccchhhhhcCCCccceEEEEecc
Q psy6853 46 EVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISK 86 (154)
Q Consensus 46 evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k 86 (154)
.-++++.-.|-|.||.|..+++|.+| |-.+-+.|.|=+..
T Consensus 55 ~gip~~~QrLi~~Gk~L~D~~tL~~y-gI~~gstI~l~~r~ 94 (100)
T 1yqb_A 55 FKAHPDQLVLIFAGKILKDPDSLAQC-GVRDGLTVHLVIKR 94 (100)
T ss_dssp HTCCGGGEEEEETTEECCTTSBHHHH-TCCTTCEEEEEECC
T ss_pred HCcChhhEEEEECCEECCCcCcHHHC-CCCCCCEEEEEEcC
Confidence 34578888999999999999999999 33334455544433
No 46
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=81.80 E-value=0.41 Score=32.39 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=27.5
Q ss_pred ccccCCceeEeeeccc-ccccchhhhh-cCCCccceEEEEe
Q psy6853 46 EVIEPSMGALWFAGKA-MHRDKFVRDF-LGKNEKCKAIVKI 84 (154)
Q Consensus 46 evi~~~~a~LW~aGKe-l~r~k~l~dY-iGkNEKTKiivKl 84 (154)
+-++++.-.|-|+||. |..+++|++| +. +-+.|.+-+
T Consensus 44 ~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~--~gs~i~lv~ 82 (84)
T 2kk8_A 44 QHIPVSKQTLIVDGIVILREDLTVEQCQIV--PTSDIQLEV 82 (84)
T ss_dssp HTCCGGGEEEEETTEECCCSSSBHHHHTCC--TTSCEEEEE
T ss_pred HCcChHHEEEEECCEEecCCcCCHHHcCCC--CCCEEEEEE
Confidence 3367888899999999 9999999999 43 333454433
No 47
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=81.70 E-value=0.28 Score=37.39 Aligned_cols=66 Identities=21% Similarity=0.382 Sum_probs=0.0
Q ss_pred ecCCCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccCCCC
Q psy6853 18 YPMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGSGA 91 (154)
Q Consensus 18 yPmgLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g~Ga 91 (154)
|+..+++.|.|. +|-..-+..+-|+++.-.|.|+|+.|..+.+|++| |-.+-+.|.+=+..+|.|.
T Consensus 13 ~~l~V~~~~TV~-------~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dy-gI~~gstL~Lvlrl~GGgK 78 (152)
T 3u5c_f 13 ITLEVESSDTID-------NVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRLRGGGK 78 (152)
T ss_dssp --------------------------------------------------------------------------
T ss_pred EEEEECCCCCHH-------HHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHc-CCCCCCEEEEEeeccCCCc
Confidence 344566666664 33333333444688888999999999999999999 3334445655566666553
No 48
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.66 E-value=0.33 Score=31.23 Aligned_cols=31 Identities=29% Similarity=0.443 Sum_probs=25.3
Q ss_pred ccccCCceeEeeecccccccchhhhh-cCCCc
Q psy6853 46 EVIEPSMGALWFAGKAMHRDKFVRDF-LGKNE 76 (154)
Q Consensus 46 evi~~~~a~LW~aGKel~r~k~l~dY-iGkNE 76 (154)
.-++++.-.|-|.||.|..+++|.+| +..+.
T Consensus 41 ~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~ 72 (81)
T 2dzi_A 41 LNVPVRQQRLLFKGKALADGKRLSDYSIGPNS 72 (81)
T ss_dssp TCCCTTTCEEEETTEECCTTSBGGGGTCCSSB
T ss_pred HCcCHHHEEEEECCeECCCCCcHHHcCCCCCC
Confidence 34678888999999999999999999 54444
No 49
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=80.97 E-value=0.33 Score=35.12 Aligned_cols=64 Identities=20% Similarity=0.362 Sum_probs=0.0
Q ss_pred ecCCCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccCC
Q psy6853 18 YPMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGS 89 (154)
Q Consensus 18 yPmgLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g~ 89 (154)
|...+++.+.|. +|-..-+...-++++.-.|.|.|+.|..+++|++| |-.+-+.|.+=+..+|.
T Consensus 13 ~~l~v~~~~TV~-------~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~-~I~~gsti~l~~rl~GG 76 (128)
T 3u5e_m 13 ITLEVESSDTID-------NVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRLRGG 76 (128)
T ss_dssp ------------------------------------------------------------------------
T ss_pred EEEEeCCCCCHH-------HHHHHHHHHhCcChHHEEEEECCEECCCCCchhhh-ccCCCCEEEEEEEcCCC
Confidence 344566666664 33333333445678888999999999999999999 33334445444444544
No 50
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=80.23 E-value=2.6 Score=29.40 Aligned_cols=37 Identities=11% Similarity=0.078 Sum_probs=27.0
Q ss_pred cccCCc-eeEeeecccccccchhhhhcCCCccceEEEEe
Q psy6853 47 VIEPSM-GALWFAGKAMHRDKFVRDFLGKNEKCKAIVKI 84 (154)
Q Consensus 47 vi~~~~-a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl 84 (154)
-+.++. -.|.|+||.|..+++|.+|-=+ +-+.|.+=+
T Consensus 61 gip~~~~qrLi~~Gk~L~D~~tL~~y~i~-~g~~i~lv~ 98 (107)
T 1x1m_A 61 SVPDPELIDLIYCGRKLKDDQTLDFYGIQ-PGSTVHVLR 98 (107)
T ss_dssp TCCCSSSEEEEETTEECCTTCBHHHHTCC-TTCEEEEEE
T ss_pred CCChhhcEEEEECCeECCCCCcHHHcCCC-CCCEEEEEe
Confidence 457778 8899999999999999999322 334454433
No 51
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=80.08 E-value=0.73 Score=32.22 Aligned_cols=36 Identities=17% Similarity=0.259 Sum_probs=27.6
Q ss_pred ccccCCceeEeeecccccccchhhhhcCCCccceEEE
Q psy6853 46 EVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIV 82 (154)
Q Consensus 46 evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiiv 82 (154)
.-++++.-.|.|+||.|..+++|++| |-.+-+.|.+
T Consensus 61 ~gip~~~QrLi~~Gk~L~D~~tL~~~-gI~~g~tI~l 96 (101)
T 3m63_B 61 NGIPVANQRLIYSGKILKDDQTVESY-HIQDGHSVHL 96 (101)
T ss_dssp HSCCSTTCCEEETTEECCTTSBTTTT-TCCTTEEEEE
T ss_pred HCcChHHEEEEECCEECCCcCcHHHC-CCCCCCEEEE
Confidence 34578888999999999999999999 3334445544
No 52
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=79.60 E-value=0.65 Score=32.34 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=28.6
Q ss_pred ccccCCceeEeeecccccccchhhhhcCCCccceEEEEe
Q psy6853 46 EVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKI 84 (154)
Q Consensus 46 evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl 84 (154)
.-++++.-.|-|.||.|..+++|.+| |-.+-+.|.|-+
T Consensus 58 ~gip~~~qrLi~~Gk~L~D~~tL~~~-gI~~g~~I~l~~ 95 (101)
T 2klc_A 58 FKSHTDQLVLIFAGKILKDQDTLSQH-GIHDGLTVHLVI 95 (101)
T ss_dssp HTCCGGGEEEEETTEEECTTCCTGGG-TCCTTCEEEEEE
T ss_pred HCcChhhEEEEECCEECCCcCcHHHc-CCCCCCEEEEEE
Confidence 34678888999999999999999999 333445565544
No 53
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=79.16 E-value=1.2 Score=33.17 Aligned_cols=52 Identities=23% Similarity=0.364 Sum_probs=34.3
Q ss_pred cCCCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhh-cCCCcc
Q psy6853 19 PMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDF-LGKNEK 77 (154)
Q Consensus 19 PmgLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dY-iGkNEK 77 (154)
+..+++.|.|.-.=+--++.. -++++.-.|.|+|+.|..+++|++| +..+..
T Consensus 34 ~l~v~~~~tV~~lK~~I~~~~-------gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~ 86 (172)
T 3u30_A 34 TLEVEPSDTIENVKAKIQDKE-------GIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 86 (172)
T ss_dssp EEEECTTCBHHHHHHHHHHHH-------CCCGGGEEEEETTEECCTTCBTGGGTCCTTCE
T ss_pred EEEECCCCcHHHHHHHHHHHH-------CcChHHEEEEECCccccccCCHhHcCCcccce
Confidence 344666676653222222223 3577788999999999999999999 544443
No 54
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=78.52 E-value=0.89 Score=31.24 Aligned_cols=50 Identities=22% Similarity=0.080 Sum_probs=33.8
Q ss_pred CCCCchhhhhhcccccccCcccccccccCCceeEe-------eecccccccchhhhhcCCCccc
Q psy6853 22 LPTHDPIRLEFENREDLTGTQASKEVIEPSMGALW-------FAGKAMHRDKFVRDFLGKNEKC 78 (154)
Q Consensus 22 LP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW-------~aGKel~r~k~l~dYiGkNEKT 78 (154)
+|+.+.|.-.=+--++..|. +++...|. |+||.+..+++|++|-=.++-|
T Consensus 21 ~~~s~TI~~lK~ki~~~~Gi-------p~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ 77 (86)
T 4b6w_A 21 YGLAQTIESIKENVFTHFAT-------PPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFV 77 (86)
T ss_dssp EETTSBHHHHHHHHHTTSCC-------CGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCE
T ss_pred cCccCcHHHHHHHHHHHHCC-------CHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCE
Confidence 45666665333444555665 67777777 6899999999999993344444
No 55
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=76.96 E-value=2.9 Score=29.25 Aligned_cols=42 Identities=24% Similarity=0.385 Sum_probs=31.2
Q ss_pred ccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccC
Q psy6853 46 EVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIG 88 (154)
Q Consensus 46 evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g 88 (154)
.-++++.-.|.|.||.|..+++|++| |-.+-+.|.|-+..+|
T Consensus 69 ~gip~~~qrLi~~Gk~L~D~~tL~~~-gI~~gs~I~l~~rl~G 110 (111)
T 2ojr_A 69 EGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRLRG 110 (111)
T ss_dssp HCCCTTTEEEEETTEECCSSCBTTTT-TCCTTCEEEEEECCCC
T ss_pred HCcCcccEEEEECCEECCCCCcHHHc-CCCCCCEEEEEEeCCC
Confidence 34678889999999999999999999 3334455665555554
No 56
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=76.91 E-value=0.77 Score=34.35 Aligned_cols=27 Identities=11% Similarity=0.084 Sum_probs=24.3
Q ss_pred cccccCCceeEeeecccccccchhhhh
Q psy6853 45 KEVIEPSMGALWFAGKAMHRDKFVRDF 71 (154)
Q Consensus 45 ~evi~~~~a~LW~aGKel~r~k~l~dY 71 (154)
.+-|+++.-.|+|+||.|..+++|+||
T Consensus 34 ~~giPp~qQrLI~~Gk~LeD~kTL~dy 60 (118)
T 4ajy_B 34 ILKRPPDEQRLYKDDQLLDDGKTLGEC 60 (118)
T ss_dssp HHCCCGGGEEEEETTEECCTTSBTTTT
T ss_pred HHCCCHHHeEEEeCCeECCCcCCHHHc
Confidence 344688899999999999999999999
No 57
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=76.73 E-value=3 Score=29.03 Aligned_cols=61 Identities=10% Similarity=0.114 Sum_probs=44.7
Q ss_pred CCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccCCCC
Q psy6853 23 PTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGSGA 91 (154)
Q Consensus 23 P~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g~Ga 91 (154)
-+.+|++..++.-.+ ..-++++...|.|.|+.|..+.+..+| |-.+-.-|=|-+.++|.+.
T Consensus 23 k~~t~l~kl~~~y~~-------~~gi~~~~~rf~FdG~~l~~~~Tp~dl-~medgD~Idv~~~q~gg~~ 83 (91)
T 2io0_B 23 KRHTPLSKLMKAYCE-------RQGLSMRQIRFRFDGQPINETDTPAQL-EMEDEDTIDVFQQQTGGVY 83 (91)
T ss_dssp ETTSCTHHHHHHHHH-------HTTCCSTTEEEEETTEECCTTCCTTTT-TCCTTEEEEEEECCCCCCC
T ss_pred CCCChHHHHHHHHHH-------HhCCCcccEEEEECCEEcCCCCCHHHc-CCCCCCEEEEEEeccCCcc
Confidence 345666655544332 233577899999999999999999998 5556667888888888654
No 58
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=76.50 E-value=2.9 Score=30.94 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=21.5
Q ss_pred cCCceeEeeecccccccchhhhh
Q psy6853 49 EPSMGALWFAGKAMHRDKFVRDF 71 (154)
Q Consensus 49 ~~~~a~LW~aGKel~r~k~l~dY 71 (154)
.++.-.|-|+||.|..+++|++|
T Consensus 62 ~~~~qrLIy~GK~LeD~~TL~~y 84 (125)
T 2gow_A 62 SPNILRLIYQGRFLHGNVTLGAL 84 (125)
T ss_dssp CGGGEEEESSSSEEESSCBTGGG
T ss_pred ChHHEEEEECCcCCCCCCcHHHc
Confidence 47888999999999999999999
No 59
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=75.92 E-value=2.7 Score=29.56 Aligned_cols=42 Identities=24% Similarity=0.385 Sum_probs=29.7
Q ss_pred ccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccC
Q psy6853 46 EVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIG 88 (154)
Q Consensus 46 evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g 88 (154)
.-++++.-.|.|.||.|..+++|++| |-.+-+.|.+=+.-+|
T Consensus 69 ~gip~~~QrLi~~Gk~L~D~~tL~~~-gI~~gs~I~l~~rl~G 110 (111)
T 3vdz_A 69 EGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRLRG 110 (111)
T ss_dssp HCCCGGGEEEEETTEECCTTSBTTTT-TCCTTCEEEEEECCCC
T ss_pred hCCChHHEEEEECCEECCCCCcHHHC-CCCCCCEEEEEEecCC
Confidence 34577888999999999999999999 3333344554444443
No 60
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=75.36 E-value=0.97 Score=32.95 Aligned_cols=51 Identities=16% Similarity=0.171 Sum_probs=33.3
Q ss_pred ecCCCCCCchhhhhhcccccccCcccccccccCCceeEe-e-ecccccccchhhhh-cCCC
Q psy6853 18 YPMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALW-F-AGKAMHRDKFVRDF-LGKN 75 (154)
Q Consensus 18 yPmgLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW-~-aGKel~r~k~l~dY-iGkN 75 (154)
|+..+++.|.|.- |...-+...-++++.-.|. | +|+.|..+++|++| +..+
T Consensus 15 ~~l~v~~~~tV~~-------lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~ 68 (159)
T 3rt3_B 15 FQVSLSSSMSVSE-------LKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPG 68 (159)
T ss_dssp EEEECCTTCCHHH-------HHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTT
T ss_pred EEEEeCCCCcHHH-------HHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCC
Confidence 3446677777742 2222222233567777788 8 89999999999999 4433
No 61
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=75.18 E-value=0.91 Score=30.53 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=26.2
Q ss_pred cccCCceeEeeecccccccchhhhhcCCCccceEEE
Q psy6853 47 VIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIV 82 (154)
Q Consensus 47 vi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiiv 82 (154)
-++++.-.|-|.||.|..+++|++| |-.+-+.|.|
T Consensus 46 gip~~~qrL~~~Gk~L~D~~tL~~~-gi~~g~~l~l 80 (85)
T 2kd0_A 46 NVLPRGQKLIFKGKVLVETSTLKQS-DVGSGAKLML 80 (85)
T ss_dssp CCCTTTCEEEETTEECCTTCBTTTT-TCCTTEEEEE
T ss_pred CcChHHEEEEECCeECCCcCCHHHC-CCCCCCEEEE
Confidence 3577888899999999999999999 2223344554
No 62
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=75.09 E-value=3.2 Score=29.82 Aligned_cols=47 Identities=13% Similarity=0.149 Sum_probs=32.6
Q ss_pred cccccccCCceeEeeecccccccchhhhh-cCCCccceEEEEecccCCCCC
Q psy6853 43 ASKEVIEPSMGALWFAGKAMHRDKFVRDF-LGKNEKCKAIVKISKIGSGAP 92 (154)
Q Consensus 43 a~~evi~~~~a~LW~aGKel~r~k~l~dY-iGkNEKTKiivKl~k~g~GaP 92 (154)
+..+-++++.--|=|+||.|..+++|++| |-.+- |=+++.| +|+.+.
T Consensus 50 ~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gs-ti~vl~l--rg~~~~ 97 (100)
T 1wju_A 50 AETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNV-KAMVLEL--KQSSGP 97 (100)
T ss_dssp HHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSE-EEEEECC--CCCCCS
T ss_pred HHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCC-EEEEEEE--CCCCcc
Confidence 33445688888899999999999999999 43333 2255444 555543
No 63
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=74.03 E-value=2.3 Score=36.73 Aligned_cols=33 Identities=27% Similarity=0.342 Sum_probs=26.1
Q ss_pred cccCCceeEeeecccccccchhhhhcCCCccceE
Q psy6853 47 VIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKA 80 (154)
Q Consensus 47 vi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKi 80 (154)
-|.++.-.|-|+||.|..+++|++| |-.+.+.|
T Consensus 45 gip~~~QrLiy~GK~L~D~~tL~dy-gI~~gstI 77 (368)
T 1oqy_A 45 AFPVAGQKLIYAGKILSDDVPIRDY-RIDEKNFV 77 (368)
T ss_dssp SCCSTEEEEESSSSEECSSSBTTTT-CCCTTSCE
T ss_pred CCChhheEEEECCeecCCcCCHHHc-CCCCCCEE
Confidence 4678889999999999999999999 33344445
No 64
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=74.01 E-value=0.97 Score=35.72 Aligned_cols=44 Identities=25% Similarity=0.395 Sum_probs=32.2
Q ss_pred cccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccCC
Q psy6853 45 KEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGS 89 (154)
Q Consensus 45 ~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g~ 89 (154)
.+-++++.-.|-|+|+.|..+++|++| |-.+-+.|.+=+.-+|.
T Consensus 138 ~~gIp~~~QrLi~~Gk~L~D~~tL~dy-gI~~gstI~LvlrlrGG 181 (189)
T 3q3f_A 138 KEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRLRGG 181 (189)
T ss_dssp HHCCCGGGCCEEETTEECCTTCBGGGG-TCCTTCEEEECCCCCCC
T ss_pred ccCCCHHHEEEEECCEECCCCCCHHHC-CCCCCCEEEEEEEcCCC
Confidence 344677888999999999999999999 33444556655555554
No 65
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=72.88 E-value=2.8 Score=29.60 Aligned_cols=50 Identities=26% Similarity=0.442 Sum_probs=33.6
Q ss_pred cCCCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhh-cCCC
Q psy6853 19 PMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDF-LGKN 75 (154)
Q Consensus 19 PmgLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dY-iGkN 75 (154)
+..+++.+.|.-.-+--++..| ++++.-.|-|+|+.|..+++|++| +..+
T Consensus 14 ~~~v~~~~tv~~lK~~i~~~~g-------ip~~~q~L~~~g~~L~d~~tL~~~~i~~~ 64 (152)
T 3b08_A 14 TLEVEPSDTIENVKAKIQDKEG-------IPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64 (152)
T ss_dssp EEECCTTCBHHHHHHHHHHHHC-------CCGGGEEEEETTEECCTTSBTGGGTCCTT
T ss_pred EEEECCCCCHHHHHHHHHHHHC-------cChHHeEEEECCeECcCcccHHHhccCCC
Confidence 4456677777533322222223 467888899999999999999999 4433
No 66
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=72.82 E-value=2.4 Score=27.87 Aligned_cols=26 Identities=19% Similarity=0.438 Sum_probs=23.1
Q ss_pred ccccCCceeEeeecccccccchhhhh
Q psy6853 46 EVIEPSMGALWFAGKAMHRDKFVRDF 71 (154)
Q Consensus 46 evi~~~~a~LW~aGKel~r~k~l~dY 71 (154)
.-++++.-.|.|+||.|..+++|++|
T Consensus 51 ~gip~~~qrLi~~Gk~L~D~~tL~~~ 76 (88)
T 4eew_A 51 VSIPSEKQRLIYQGRVLQDDKKLQEY 76 (88)
T ss_dssp HTCCGGGEEEEETTEECCTTSBGGGG
T ss_pred hCCCHHHEEEEECCEECCCCCcHHHc
Confidence 34577888999999999999999999
No 67
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=71.78 E-value=0.81 Score=34.06 Aligned_cols=30 Identities=33% Similarity=0.571 Sum_probs=24.9
Q ss_pred ccccCCceeEeeecccccccchhhhh-cCCC
Q psy6853 46 EVIEPSMGALWFAGKAMHRDKFVRDF-LGKN 75 (154)
Q Consensus 46 evi~~~~a~LW~aGKel~r~k~l~dY-iGkN 75 (154)
+-|+++.-.|-|.|++|..+++|.+| +..+
T Consensus 130 ~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g 160 (172)
T 3u30_A 130 EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 160 (172)
T ss_dssp HCCCGGGCCEEETTEECCTTSBSGGGTCCTT
T ss_pred hCCCceeEEEEECCccCCCCCcHHHhCCCCC
Confidence 34688888999999999999999999 4433
No 68
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=71.67 E-value=1.3 Score=31.84 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=25.1
Q ss_pred cccccccCCceeEeeecccccccchhhhh
Q psy6853 43 ASKEVIEPSMGALWFAGKAMHRDKFVRDF 71 (154)
Q Consensus 43 a~~evi~~~~a~LW~aGKel~r~k~l~dY 71 (154)
+..+-|+++.-.|.|+|+.|..+.+|.||
T Consensus 52 ~~k~Gip~~qQrLif~Gk~LkD~~TL~dY 80 (93)
T 3plu_A 52 SLQIGTQPNKIVLQKGGSVLKDHISLEDY 80 (93)
T ss_dssp HHHHTCCGGGEEEEETTEECCTTSBTGGG
T ss_pred HHHhCCCHHHEEEEeCCEEccCcCCHHHc
Confidence 34455688899999999999999999999
No 69
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=71.40 E-value=4.7 Score=28.97 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=28.5
Q ss_pred CceeEeeeccccc-ccchhhhhcCCCccceEEEEecccCCCCC
Q psy6853 51 SMGALWFAGKAMH-RDKFVRDFLGKNEKCKAIVKISKIGSGAP 92 (154)
Q Consensus 51 ~~a~LW~aGKel~-r~k~l~dYiGkNEKTKiivKl~k~g~GaP 92 (154)
+...|-|+||.|. .+++|+|| |-.+...|.+.+.-+|.--|
T Consensus 61 ~q~~Li~~Gk~L~dD~~tL~dy-gI~~g~~l~lv~~lr~~~~~ 102 (105)
T 1v2y_A 61 RTYHLTSAGEKLTEDRKKLRDY-GIRNRDEVSFIKKLGQKSGP 102 (105)
T ss_dssp TTEEEESSSCEECCSSSBHHHH-TCCSSEEEEEEECSCSCCCC
T ss_pred eeEEEEeCCcCccCCcCCHHHc-CCCCCCEEEEEehhccCCCC
Confidence 4568999999997 56999999 33444456666665655444
No 70
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=70.42 E-value=1.3 Score=32.84 Aligned_cols=31 Identities=10% Similarity=0.084 Sum_probs=26.3
Q ss_pred cccccccCCceeEeeecccccccchhhhh-cC
Q psy6853 43 ASKEVIEPSMGALWFAGKAMHRDKFVRDF-LG 73 (154)
Q Consensus 43 a~~evi~~~~a~LW~aGKel~r~k~l~dY-iG 73 (154)
+..+-|.++.-.|.|+||.|..+++|+|| |.
T Consensus 32 ~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~ 63 (118)
T 2fnj_B 32 EGILKRPPEEQRLYKDDQLLDDGKTLGECGFT 63 (118)
T ss_dssp HHHHCCCGGGEEEEETTEECCTTSBHHHHTCC
T ss_pred HHHhCCCHHHeEEEECCeECCCCCCHHHcCcc
Confidence 34555788999999999999999999999 44
No 71
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=70.27 E-value=2 Score=29.07 Aligned_cols=54 Identities=20% Similarity=0.222 Sum_probs=34.7
Q ss_pred CCCCCchhhhhhcccccccCcccccccccCCceeEe---eecccccccchhhhhcCCCccceEEE
Q psy6853 21 NLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALW---FAGKAMHRDKFVRDFLGKNEKCKAIV 82 (154)
Q Consensus 21 gLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW---~aGKel~r~k~l~dYiGkNEKTKiiv 82 (154)
.+++.+.|.-.-+--++.+| ++++.-.|- |.||.|..+++|++| |-.+.++|++
T Consensus 23 ~v~~~~TV~~lK~~I~~~~g-------ip~~~QkLi~~k~~Gk~L~D~~~L~~~-~i~~g~~l~l 79 (90)
T 1v5t_A 23 TLSEDDTVLDLKQFLKTLTG-------VLPERQKLLGLKVKGKPAENDVKLGAL-KLKPNTKIMM 79 (90)
T ss_dssp SCCSSSBHHHHHHHHHHHTC-------CCTTTCEEESCEETTEECCTTSBHHHH-TCCTTEEEEE
T ss_pred EeCCCCCHHHHHHHHHHHHC-------cCHHHeEEEeeccCCcCcCCCCCHHHc-CCCCCCEEEE
Confidence 67777777433233333333 466666676 999999999999999 2233445554
No 72
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.48 E-value=2.9 Score=28.57 Aligned_cols=36 Identities=11% Similarity=0.251 Sum_probs=27.0
Q ss_pred cccCCceeEeee--cccccccchhhhhcCCCccceEEEE
Q psy6853 47 VIEPSMGALWFA--GKAMHRDKFVRDFLGKNEKCKAIVK 83 (154)
Q Consensus 47 vi~~~~a~LW~a--GKel~r~k~l~dYiGkNEKTKiivK 83 (154)
-+.++.-.|=+. ||.|..+++|++| |-.+.+.|+||
T Consensus 49 ~i~~~~QrL~~~~~Gk~L~D~~tL~~y-~i~~~stl~~K 86 (88)
T 2dzj_A 49 QWYPARQSLRLDPKGKSLKDEDVLQKL-PVGTTATLYFR 86 (88)
T ss_dssp SSCTTTCCEESSTTSCCCCTTCBTTTS-SCCSEEEEEEC
T ss_pred CCChHHeEEEecCCCcCcCCCCCHHHc-CCCCCCEEEEE
Confidence 345666666655 9999999999999 44556678876
No 73
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=67.44 E-value=3.5 Score=29.76 Aligned_cols=42 Identities=14% Similarity=0.152 Sum_probs=32.4
Q ss_pred ccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccC
Q psy6853 46 EVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIG 88 (154)
Q Consensus 46 evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g 88 (154)
.-++++...|+|.|+.|..+.+..+| |-.+=..|-|-++++|
T Consensus 64 ~gi~~~~~rF~FdG~rl~~~~Tp~dl-~medgD~Idv~~~q~G 105 (106)
T 2eke_C 64 QGKEMDSLRFLYDGIRIQADQTPEDL-DMEDNDIIEAHREQIG 105 (106)
T ss_dssp HTCCGGGEEEEETTEECCTTCCTTTT-TCCTTEEEEEEECC--
T ss_pred hCCCcccEEEEECCeEcCCCCCHHHc-CCCCCCEEEEEeeccc
Confidence 34577899999999999999999998 4555566777777776
No 74
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=63.03 E-value=2.2 Score=29.21 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=24.2
Q ss_pred cccCCceeEeeecccccccchhhhhcCCCccceEEE
Q psy6853 47 VIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIV 82 (154)
Q Consensus 47 vi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiiv 82 (154)
-++++.-.|.|.||.| .+.+|.+| |-.+..+|.+
T Consensus 51 gip~~~QrL~~~Gk~L-dd~tL~~~-~i~~g~~i~l 84 (95)
T 1v86_A 51 GLPPAMQKVMYKGLVP-EDKTLREI-KVTSGAKIMV 84 (95)
T ss_dssp CSCSTTCCCBSSSBCC-SSSBHHHH-CCCTTEEEEE
T ss_pred CcCHHHeEEEECCeeC-CcCcHHHC-CCCCCCEEEE
Confidence 3577888888999999 66799999 2233445554
No 75
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=63.03 E-value=4.6 Score=28.80 Aligned_cols=61 Identities=8% Similarity=0.093 Sum_probs=43.7
Q ss_pred CCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccCCCC
Q psy6853 23 PTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGSGA 91 (154)
Q Consensus 23 P~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g~Ga 91 (154)
-+.+|++..++.-. ...-++++...|.|.|+.|..+.+..+| |-.+-.-|-|-++++|.+.
T Consensus 42 k~~t~l~kL~~~y~-------ek~gi~~~~~rf~FdG~~l~~~~Tp~dl-~medgD~Idv~~~q~GG~~ 102 (104)
T 1wz0_A 42 KRHTPLSKLMKAYC-------ERQGLSMRQIRFRFDGQPINETDTPAQL-EMEDEDTIDVFQQQTSGPS 102 (104)
T ss_dssp CTTSCHHHHHHHHH-------HHHTCCTTTSCEESSSSBCCTTSCTTTT-TCCTTEEEEECCCCCCCSS
T ss_pred cCCChHHHHHHHHH-------HHhCCCcceEEEEECCEEcCCCCCHHHc-CCCCCCEEEEEEeccCCCC
Confidence 34555555444322 2334577899999999999999999998 5556667888888888754
No 76
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=61.19 E-value=11 Score=25.06 Aligned_cols=38 Identities=18% Similarity=0.406 Sum_probs=27.5
Q ss_pred cccccCCceeEeeecccccc-cchhhhhcCCCccceEEEE
Q psy6853 45 KEVIEPSMGALWFAGKAMHR-DKFVRDFLGKNEKCKAIVK 83 (154)
Q Consensus 45 ~evi~~~~a~LW~aGKel~r-~k~l~dYiGkNEKTKiivK 83 (154)
..-++++.-.|-|.||.|.. +++|.+| |-.+-++|.|=
T Consensus 44 ~~gip~~~qrL~~~Gk~L~D~~~~L~~~-~i~~g~~i~l~ 82 (92)
T 1wxv_A 44 VIGVPQSFQKLIFKGKSLKEMETPLSAL-GIQDGCRVMLI 82 (92)
T ss_dssp HTCCCTTTCEEEETTEEECCSSSBHHHH-TCCSSEEEEEE
T ss_pred HHCcCHHHEEEEECCeecCCCcccHHHC-CCCCCCEEEEE
Confidence 33467888999999999988 6689998 33344456543
No 77
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=59.85 E-value=6.2 Score=27.22 Aligned_cols=57 Identities=11% Similarity=0.155 Sum_probs=38.1
Q ss_pred CCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccC
Q psy6853 24 THDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIG 88 (154)
Q Consensus 24 ~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g 88 (154)
+.+|++..++.-.+ ..-++++...|.|.|+.|..+.+..+| |-.+-.-|-|-++++|
T Consensus 36 ~~t~l~kl~~~y~~-------~~gi~~~~~rf~fdG~~l~~~~Tp~dl-~medgD~Idv~~~q~G 92 (93)
T 2d07_B 36 RHTPLSKLMKAYCE-------RQGLSMRQIRFRFDGQPINETDTPAQL-EMEDEDTIDVFQQQTG 92 (93)
T ss_dssp TTSCHHHHHHHHHH-------HHTCCGGGEEEEETTEECCTTCCTTTT-TCCTTEEEEEEECC--
T ss_pred cCCHHHHHHHHHHH-------HhCCCccceEEEECCEEcCCCCCHHHc-CCCCCCEEEEEeeccC
Confidence 45566555543322 233577889999999999999999998 4445556777676666
No 78
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=59.48 E-value=5.3 Score=28.04 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=22.2
Q ss_pred cCCceeEeeecccccccchhhhhcC
Q psy6853 49 EPSMGALWFAGKAMHRDKFVRDFLG 73 (154)
Q Consensus 49 ~~~~a~LW~aGKel~r~k~l~dYiG 73 (154)
.++.-.|-|+||.|..+++|++|++
T Consensus 64 p~~~QrLIy~Gk~L~D~~tL~~y~~ 88 (99)
T 2kdb_A 64 LTKDQRLVYSGRLLPDHLQLKDILR 88 (99)
T ss_dssp CTTTCCEEETTEEECTTSBTHHHHT
T ss_pred ChhhEEEEECCEECCCCCCHHHHhc
Confidence 3488889999999999999999974
No 79
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=54.45 E-value=1.7 Score=31.35 Aligned_cols=29 Identities=10% Similarity=-0.126 Sum_probs=25.2
Q ss_pred cccccccCCceeEeeecccccccchhhhh
Q psy6853 43 ASKEVIEPSMGALWFAGKAMHRDKFVRDF 71 (154)
Q Consensus 43 a~~evi~~~~a~LW~aGKel~r~k~l~dY 71 (154)
+..+=|+++.-.|-|+||.|.++.+|+||
T Consensus 59 a~k~Gip~~qQrLi~~Gk~L~D~~TL~dy 87 (100)
T 1uh6_A 59 AAQTGTRWNKIVLKKWYTIFKDHVSLGDY 87 (100)
T ss_dssp HHHHCCCGGGCEEEETTEECCSSCBHHHH
T ss_pred HHHhCCCHHHEEEEECCEECCCCCCHHHc
Confidence 44455788999999999999999999999
No 80
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=53.89 E-value=3.6 Score=28.33 Aligned_cols=36 Identities=8% Similarity=0.159 Sum_probs=26.6
Q ss_pred ccccCCceeEeeecccccccchhhhhcCCCccceEEEE
Q psy6853 46 EVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVK 83 (154)
Q Consensus 46 evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivK 83 (154)
.-+.++.-.|-|.||.|..+ +|++| |-.+.++|++=
T Consensus 41 tgip~~~QkLi~~Gk~L~D~-tL~~~-~I~~g~~i~l~ 76 (96)
T 1wgg_A 41 TGVQPARQKVMVKGGTLKDD-DWGNI-KMKNGMTVLMM 76 (96)
T ss_dssp TCCCTTTSCCEETTEECCSS-CCCSC-CCCSSCEEECC
T ss_pred HCcCHHHeEEEECCcCCCCC-CHHHC-CCCCCCEEEEE
Confidence 33577777888999999988 99998 44455666653
No 81
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=48.13 E-value=4.3 Score=32.34 Aligned_cols=60 Identities=15% Similarity=0.150 Sum_probs=0.9
Q ss_pred cCCCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccCCCC
Q psy6853 19 PMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGSGA 91 (154)
Q Consensus 19 PmgLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g~Ga 91 (154)
+..+.+.|.| ++|-..-+..+-|+++.-.|.|+|++|.++.+|+ ++ +.|-+=|.-+|.+.
T Consensus 14 tLeV~~sdTV-------~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~-STLhLvlRLrGG~~ 73 (189)
T 2xzm_9 14 IYTLEQGTSV-------LDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DD-VTYYLSLKLLGGKK 73 (189)
T ss_dssp -----------------------------------------------------------------------CC
T ss_pred EEEECCcChH-------HHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CC-CEEEEEEecCCCcc
Confidence 3445555655 3333333344557889999999999999999998 33 23443344455444
No 82
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=46.61 E-value=18 Score=31.89 Aligned_cols=23 Identities=35% Similarity=0.703 Sum_probs=19.6
Q ss_pred hhcceeeeecCCCCCCchhhhhhcc
Q psy6853 10 LRGCIMIVYPMNLPTHDPIRLEFEN 34 (154)
Q Consensus 10 lrGAvmIvyPmgLP~~Dpir~elen 34 (154)
+||.+.=+||++-. .|||++|-+
T Consensus 164 vRG~IiDIfp~~~~--~PvRIefFg 186 (483)
T 3hjh_A 164 TRGALLDLFPMGSE--LPYRLDFFD 186 (483)
T ss_dssp EETTEEEECCBTCS--SCEEEEEET
T ss_pred EeCCceEEcCCCCC--ceEEEEecC
Confidence 68999999999864 799999844
No 83
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=44.40 E-value=14 Score=26.69 Aligned_cols=58 Identities=12% Similarity=0.201 Sum_probs=40.8
Q ss_pred CCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccC
Q psy6853 23 PTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIG 88 (154)
Q Consensus 23 P~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g 88 (154)
-+.+|++..++.-.+ ..-++++...|.|.|+.|..+.+..+| |-.+-..|-|-+..+|
T Consensus 44 k~~t~l~kL~~ay~e-------k~gi~~~~~rfiFdG~~L~~~~Tp~dl-~mEDgD~Idv~~~q~G 101 (110)
T 2k8h_A 44 KSRTALKKLIDTYCK-------KQGISRNSVRFLFDGTPIDETKTPEEL-GMEDDDVIDAMVEQTG 101 (110)
T ss_dssp CTTSSHHHHHHHHHH-------HHTCCSSSCEEESSSCBCCSSSHHHHH-HCSSEEEEEEECCCCC
T ss_pred CCCChHHHHHHHHHH-------HhCCCcccEEEEECCEEcCCCCCHHHc-CCCCCCEEEEEEcccC
Confidence 445666655544332 234578889999999999999999999 3444456777777766
No 84
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=39.81 E-value=7.2 Score=33.03 Aligned_cols=31 Identities=32% Similarity=0.554 Sum_probs=25.1
Q ss_pred ccccCCceeEeeecccccccchhhhh-cCCCc
Q psy6853 46 EVIEPSMGALWFAGKAMHRDKFVRDF-LGKNE 76 (154)
Q Consensus 46 evi~~~~a~LW~aGKel~r~k~l~dY-iGkNE 76 (154)
.-|+++.-.|-++||.|..+++|++| |..+.
T Consensus 267 ~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gs 298 (307)
T 3ai5_A 267 EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 298 (307)
T ss_dssp HCCCGGGCEEEETTEECCTTSBTGGGTCCTTC
T ss_pred HCcChHHEEEEeCCeecCCCCCHHHcCCCCCC
Confidence 34678888999999999999999999 54333
No 85
>3fpn_B Geobacillus stearothermophilus UVRB interaction domain; UVRA, nucleotide excision repair, DNA repair, DNA binding protein; 1.80A {Geobacillus stearothermophilus}
Probab=38.12 E-value=8.3 Score=27.41 Aligned_cols=25 Identities=28% Similarity=0.543 Sum_probs=19.9
Q ss_pred hhcceeeeecCCCCCCchhhhhhccc
Q psy6853 10 LRGCIMIVYPMNLPTHDPIRLEFENR 35 (154)
Q Consensus 10 lrGAvmIvyPmgLP~~Dpir~elen~ 35 (154)
+||.+.=+||.+- +-.|+|++|-+.
T Consensus 51 vRG~iiDIfp~~~-~~~pvRIeffgd 75 (106)
T 3fpn_B 51 VRGDVVEIFPASR-DEHCIRVEFFGD 75 (106)
T ss_dssp EETTEEEEECSST-TCCEEEEEEETT
T ss_pred EECCEEEEecCCC-CCceEEEEEECC
Confidence 5899999999875 346999999553
No 86
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=37.77 E-value=11 Score=25.09 Aligned_cols=42 Identities=12% Similarity=0.319 Sum_probs=30.8
Q ss_pred CCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhh
Q psy6853 23 PTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDF 71 (154)
Q Consensus 23 P~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dY 71 (154)
-+.+|++..++.-.+ ..-++++...|.|.|+.|..+.+..+|
T Consensus 26 ~~~t~l~kl~~~y~~-------~~gi~~~~~rf~fdG~~l~~~~Tp~~l 67 (79)
T 3a4r_A 26 SPDSPLKVLMSHYEE-------AMGLSGHKLSFFFDGTKLSGKELPADL 67 (79)
T ss_dssp CTTSCHHHHHHHHHH-------HHTCTTCCCEEEETTEECCSCCCHHHH
T ss_pred CCCChHHHHHHHHHH-------HhCCCcccEEEEECCEEcCCCCCHHHc
Confidence 456666655544332 233577889999999999999999998
No 87
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=37.72 E-value=27 Score=25.88 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHHHHhHHHHhh
Q psy6853 99 NEEEKKQLMLHYYRKQEEMKL 119 (154)
Q Consensus 99 see~qk~mMa~yykrQEElKk 119 (154)
|.|+-|+||.|||----|+..
T Consensus 72 SDeE~kAMlsyy~~~~~Eq~~ 92 (106)
T 2npt_A 72 SDEEMKAMLSYYYSTVMEQQV 92 (106)
T ss_dssp SHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHh
Confidence 899999999999977665543
No 88
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=37.00 E-value=11 Score=24.33 Aligned_cols=42 Identities=10% Similarity=0.198 Sum_probs=30.9
Q ss_pred CCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhh
Q psy6853 23 PTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDF 71 (154)
Q Consensus 23 P~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dY 71 (154)
-+.+|++..++.-.+ ..-++++...|.|.|+.+..+.+..+|
T Consensus 19 ~~~t~l~kl~~~y~~-------~~gi~~~~~rf~fdG~~l~~~~Tp~~l 60 (72)
T 1wm3_A 19 KRHTPLSKLMKAYCE-------RQGLSMRQIRFRFDGQPINETDTPAQL 60 (72)
T ss_dssp CTTSCTHHHHHHHHH-------HHTCCTTTCEEEETTEECCTTCCTTTT
T ss_pred CCCChHHHHHHHHHH-------HhCCCcceEEEEECCEEcCCCCCHHHc
Confidence 456777665544332 233577899999999999999999988
No 89
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=32.80 E-value=14 Score=30.77 Aligned_cols=28 Identities=21% Similarity=0.408 Sum_probs=22.7
Q ss_pred hHHHHHHhhcceeeeecCCCCCCchhhhhh
Q psy6853 3 WHHTLSLLRGCIMIVYPMNLPTHDPIRLEF 32 (154)
Q Consensus 3 ~~e~Ld~lrGAvmIvyPmgLP~~Dpir~el 32 (154)
++.++..-.-|.-|+ ..|||.+|||+.|
T Consensus 172 ~e~a~~aY~~A~~iA--~~L~pthPirLGL 199 (260)
T 2npm_A 172 AEDALKAYKDATVVA--KDLEPTHPIRLGL 199 (260)
T ss_dssp HHHHHHHHHHHHHHH--TTSCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HhCCCCCcHHHHH
Confidence 356677778888888 8899999999765
No 90
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=26.38 E-value=52 Score=22.81 Aligned_cols=39 Identities=13% Similarity=-0.061 Sum_probs=26.3
Q ss_pred cccccCCceeEeeecc------cc-cccchhhhhcCCCccceEEEE
Q psy6853 45 KEVIEPSMGALWFAGK------AM-HRDKFVRDFLGKNEKCKAIVK 83 (154)
Q Consensus 45 ~evi~~~~a~LW~aGK------el-~r~k~l~dYiGkNEKTKiivK 83 (154)
.+=|+++...|.|.|| +| ..+++|++|-=.+.-|=.+|.
T Consensus 49 ~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd 94 (97)
T 2kj6_A 49 KCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIID 94 (97)
T ss_dssp HHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEE
T ss_pred HHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEEe
Confidence 3445899999999995 34 778899999434444433444
No 91
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=26.02 E-value=41 Score=22.08 Aligned_cols=64 Identities=19% Similarity=0.234 Sum_probs=34.5
Q ss_pred CCCCCchhhhhhcccccccCcccccccccCCceeEeee--ccccc---ccchhhhhcCCCccceEEEEecccCCCCCCCC
Q psy6853 21 NLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFA--GKAMH---RDKFVRDFLGKNEKCKAIVKISKIGSGAPSRE 95 (154)
Q Consensus 21 gLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~a--GKel~---r~k~l~dYiGkNEKTKiivKl~k~g~GaP~RE 95 (154)
.+++.+.|.-..+--+.-+| |.++.-.|-+. +|.+. .+++|++| |-..-.+|+|+-. ...|++.
T Consensus 16 ~l~~~~Tv~~Lk~~I~~~~g-------i~~~~qrL~~~~p~k~l~l~~~~~tL~~~-gl~~g~~l~v~~~---~~~~~~~ 84 (86)
T 2kzr_A 16 GLSSRTRLRELQGQIAAITG-------IAPGSQRILVGYPPECLDLSDRDITLGDL-PIQSGDMLIVEED---QTRPKAS 84 (86)
T ss_dssp SCCTTCBHHHHHHHHHHHTC-------CCTTTCCCEESSCCCCCCCCCSSCBTTTS-SCCTTCEEECCCC---SCSCCCC
T ss_pred ecCCCCCHHHHHHHHHHHhC-------CCccceEEEeCCCCcccccCCCCCCHHHc-CCCCCCEEEEEeC---CCCcccC
Confidence 47777777533322222222 23344444444 48874 68899999 3334456887643 3445543
No 92
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=22.99 E-value=95 Score=22.64 Aligned_cols=41 Identities=15% Similarity=0.196 Sum_probs=30.9
Q ss_pred cccCCceeEeeecccccccchhhhhcCCCccceEEEEecccC
Q psy6853 47 VIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIG 88 (154)
Q Consensus 47 vi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g 88 (154)
-++.....|+|.|+.+..+.+..++ |-.+-..|=|=+++.|
T Consensus 75 Gl~~~~irFlFDG~rI~~~~TP~dL-~MEDgD~IdV~~~Q~G 115 (115)
T 3kyd_D 75 GVPMNSLRFLFEGQRIADNHTPKEL-GMEEEDVIEVYQEQCG 115 (115)
T ss_dssp TCCTTSEEEEETTEECCTTCCTTTT-TCCTTCEEEEEECCCC
T ss_pred CCChhhEEEEECCeECCCCCCHHHc-CCCCCCEEEEEeeccC
Confidence 3578999999999999999888887 4444445666666544
No 93
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=22.69 E-value=77 Score=24.06 Aligned_cols=35 Identities=14% Similarity=0.303 Sum_probs=18.2
Q ss_pred CCCCCCCCC---CCCHHHHHHHHHHHHHhHHHHhhhhhc
Q psy6853 88 GSGAPSREP---VMNEEEKKQLMLHYYRKQEEMKLLESD 123 (154)
Q Consensus 88 g~GaP~REp---~isee~qk~mMa~yykrQEElKkleed 123 (154)
|+.+.++.| .+++||++.++.=. .|++++.+.|++
T Consensus 4 ~~~~m~~~~dLs~LteeEr~~Il~VL-~Rd~~l~~~Eee 41 (153)
T 2zet_C 4 GSSGMGKRLDLSTLTDEEAEHVWAVV-QRDFDLRRREEE 41 (153)
T ss_dssp -------CCCCTTSCHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred CCCCCccCCCcccCCHHHHHHHHHHH-HhHHHHHHhHHH
Confidence 455555666 57899997766655 556666655553
No 94
>3e8t_A Takeout 1, takeout-like protein 1; transport protein; HET: UQ8; 1.30A {Epiphyas postvittana} PDB: 3e8w_A*
Probab=21.47 E-value=21 Score=27.40 Aligned_cols=27 Identities=11% Similarity=0.123 Sum_probs=17.7
Q ss_pred HHHHHHhhcceeeeec-CCCCCCchhhh
Q psy6853 4 HHTLSLLRGCIMIVYP-MNLPTHDPIRL 30 (154)
Q Consensus 4 ~e~Ld~lrGAvmIvyP-mgLP~~Dpir~ 30 (154)
.++++.++--..--+| .|+||.||..+
T Consensus 17 ~~~i~~~~~~l~~GiPelgip~ldPl~i 44 (220)
T 3e8t_A 17 TSAFQQALPTFVAGLPDHGVEVMDVLDL 44 (220)
T ss_dssp HHHHHHHHHHHHTCBGGGTBCCBTTEEE
T ss_pred HHHHHHHHHHhcCCCcccCCCCCCceee
Confidence 4455555544444467 69999999973
No 95
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=21.28 E-value=93 Score=21.37 Aligned_cols=38 Identities=8% Similarity=-0.046 Sum_probs=25.4
Q ss_pred cccCCceeEeeecc-----------c----ccccchhhhhcCCCccceEEEEec
Q psy6853 47 VIEPSMGALWFAGK-----------A----MHRDKFVRDFLGKNEKCKAIVKIS 85 (154)
Q Consensus 47 vi~~~~a~LW~aGK-----------e----l~r~k~l~dYiGkNEKTKiivKl~ 85 (154)
-|+++.-.|.+.|+ + +..+++|++| |-..=..|.|...
T Consensus 42 gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~-gi~~G~~L~l~~~ 94 (107)
T 1wf9_A 42 QIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSL-NLAHGSMVYLAYE 94 (107)
T ss_dssp CCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGT-CCCTTCEEECCCS
T ss_pred CcCcccCEEEECCccccccCccccccccccCCCCCCHHHC-CCCCCCEEEEEeC
Confidence 35677778888888 5 4678999999 2223344665544
No 96
>2rck_A JuvenIle hormone binding protein; hemolymph, JHBP-fold; HET: NAG; 2.44A {Galleria mellonella}
Probab=20.58 E-value=23 Score=27.77 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=19.1
Q ss_pred hHHHHHHhhcceeeeec-CCCCCCchhhh
Q psy6853 3 WHHTLSLLRGCIMIVYP-MNLPTHDPIRL 30 (154)
Q Consensus 3 ~~e~Ld~lrGAvmIvyP-mgLP~~Dpir~ 30 (154)
+.++++.++--..--+| .|+||.||..+
T Consensus 18 i~~~i~~l~~~~~~GiPel~ip~ldPl~i 46 (225)
T 2rck_A 18 ISKATQVFLDNTYQGIPEYNIKKLDPITI 46 (225)
T ss_dssp HHHHHHHHHHHHTTCBGGGTBCCCSSEEE
T ss_pred HHHHHHHHHHHhcCCCcccCCCCcCceec
Confidence 34556666555555568 79999999873
Done!