RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6853
(154 letters)
>gnl|CDD|220965 pfam11069, DUF2870, Protein of unknown function (DUF2870). This is
a eukaryotic family of proteins with unknown function.
Length = 98
Score = 126 bits (319), Expect = 8e-39
Identities = 51/95 (53%), Positives = 70/95 (73%)
Query: 55 LWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGSGAPSREPVMNEEEKKQLMLHYYRKQ 114
LWFAGK + R K + D++GKNEK K IVK+ K GSGAP REPV++EE ++ +M + YR+Q
Sbjct: 4 LWFAGKELQRGKKLSDYVGKNEKTKIIVKLQKKGSGAPPREPVIDEEAQRAMMAYMYRRQ 63
Query: 115 EEMKLLESDTDEAFRNSDWADNTSLRKNLLGLNRI 149
EE+K LE D D+++ NS WA+ SL+ L GL+ I
Sbjct: 64 EELKKLEEDDDDSYLNSQWANPNSLKNQLHGLSDI 98
>gnl|CDD|182131 PRK09881, PRK09881, D-ala-D-ala transporter subunit; Provisional.
Length = 296
Score = 28.6 bits (64), Expect = 1.3
Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 22/93 (23%)
Query: 7 LSLLRGCI------MIVYPMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGK 60
L++ I M+++ L THDP ++ R + P A WF
Sbjct: 32 LTVTGAVIIVLMLLMMIFSPWLATHDPNAIDLTAR------------LLPPSAAHWFGTD 79
Query: 61 AMHRDKFVRDFLGKNEKCKA---IVKIS-KIGS 89
+ RD F R +G + A +V I+ IGS
Sbjct: 80 EVGRDLFSRVLVGSQQSILAGLVVVAIAGMIGS 112
>gnl|CDD|183586 PRK12549, PRK12549, shikimate 5-dehydrogenase; Reviewed.
Length = 284
Score = 28.3 bits (64), Expect = 1.3
Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 4/52 (7%)
Query: 79 KAIVKISKIGSG-APSREPVMNEEEKKQLMLHY-YRK--QEEMKLLESDTDE 126
+ IG+G S P M+E E L Y YR + + L E
Sbjct: 3 RPSFLAGLIGAGIQASLSPAMHEAEGDAQGLRYVYRLIDLDALGLTADALPE 54
>gnl|CDD|143438 cd07120, ALDH_PsfA-ACA09737, Pseudomonas putida aldehyde
dehydrogenase PsfA (ACA09737)-like. Included in this CD
is the aldehyde dehydrogenase (PsfA, locus ACA09737) of
Pseudomonas putida involved in furoic acid metabolism.
Transcription of psfA was induced in response to
2-furoic acid, furfuryl alcohol, and furfural.
Length = 455
Score = 27.7 bits (62), Expect = 2.6
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 126 EAFRNSDWADNTSLRKNLL 144
AF +DWA + LR +L
Sbjct: 30 RAFDETDWAHDPRLRARVL 48
>gnl|CDD|237385 PRK13426, PRK13426, F0F1 ATP synthase subunit gamma; Provisional.
Length = 291
Score = 26.7 bits (59), Expect = 5.0
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 3 WHHTLSLLRGCIMIVYPMNLPTHDPIRLEFENREDLTGTQASKEVIEPSM 52
+HH S M V + T+ PI L E + G A+ +IEPS
Sbjct: 173 YHHFKS------MGVQVLTRETYLPIDLSQEKNAEHAGGVANDYIIEPSA 216
>gnl|CDD|216281 pfam01070, FMN_dh, FMN-dependent dehydrogenase.
Length = 302
Score = 26.3 bits (59), Expect = 7.0
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 39 TGTQAS-KEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEK--CKAIV 82
T + S +EV + G LWF + D L + E KA+V
Sbjct: 95 TVSSTSLEEVAAAAGGPLWFQLYVPKDRELTEDLLERAEAAGYKALV 141
>gnl|CDD|223152 COG0074, SucD, Succinyl-CoA synthetase, alpha subunit [Energy
production and conversion].
Length = 293
Score = 26.4 bits (59), Expect = 7.1
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 74 KNEKCKAIVKISKIGSGAPSR 94
+ + +AIV I +IG A
Sbjct: 197 ADPETEAIVMIGEIGGPAEEE 217
>gnl|CDD|176401 cd01806, Nedd8, Nebb8-like ubiquitin protein. Nedd8 (also known
as Rub1) has a single conserved ubiquitin-like domain
that is part of a protein modification pathway similar
to that of ubiquitin. Nedd8 modifies a family of
molecular scaffold proteins called cullins that are
responsible for assembling the ROC1/Rbx1 RING-based E3
ubiquitin ligases, of which several play a direct role
in tumorigenesis.
Length = 76
Score = 25.1 bits (55), Expect = 7.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 45 KEVIEPSMGALWFAGKAMHRDKFVRDF 71
KE I P L ++GK M+ DK D+
Sbjct: 33 KEGIPPQQQRLIYSGKQMNDDKTAADY 59
>gnl|CDD|113398 pfam04625, DEC-1_N, DEC-1 protein, N-terminal region. The
defective chorion-1 gene (dec-1) in Drosophila encodes
follicle cell proteins necessary for proper eggshell
assembly. Multiple products of the dec-1 gene are formed
by alternative RNA splicing and proteolytic processing.
Cleavage products include S80 (80 kDa) which is
incorporated into the eggshell, and further proteolysis
of S80 gives S60 (60 kDa).
Length = 407
Score = 26.3 bits (57), Expect = 7.9
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 64 RDKFVRDFLGKNEKCKA------IVKISKIGSGAPSREPVMNEEEKKQLMLHYYRKQEE 116
RD +VR + K + KA K + + A S++ +++E+ Q+M + YR E
Sbjct: 342 RDDYVRRLVNKEAQRKARNSGINTQKANALKRQAKSQDQTLSKEDIVQIMAYAYRMANE 400
>gnl|CDD|180749 PRK06920, dnaE, DNA polymerase III DnaE; Reviewed.
Length = 1107
Score = 26.3 bits (58), Expect = 9.4
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 87 IGSGAPSREPVMNEEEKKQLMLHYYRKQEEMKLLESDTDEAFRNS 131
+ SG +P + Q Y + +EM+ L S EA N+
Sbjct: 210 VESGTKMTDPDRPRLKTDQY---YLKSSDEMEALFSHVPEAIYNT 251
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.409
Gapped
Lambda K H
0.267 0.0709 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,757,787
Number of extensions: 677305
Number of successful extensions: 568
Number of sequences better than 10.0: 1
Number of HSP's gapped: 567
Number of HSP's successfully gapped: 16
Length of query: 154
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 65
Effective length of database: 6,990,096
Effective search space: 454356240
Effective search space used: 454356240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.0 bits)