RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6853
         (154 letters)



>d1l1la_ c.7.1.4 (A:) B12-dependent (class II) ribonucleotide
           reductase {Lactobacillus leichmannii [TaxId: 28039]}
          Length = 721

 Score = 28.0 bits (61), Expect = 0.57
 Identities = 9/39 (23%), Positives = 10/39 (25%), Gaps = 1/39 (2%)

Query: 33  ENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDF 71
           E  E L           PS   LW +G    R       
Sbjct: 77  EEAERLYKLIYGLGAT-PSGRNLWISGTDYQRRTGDSLN 114


>gi|150401221|ref|YP_001324987.1|(10-76:78) DNA-directed RNA
           polymerase subunit H [Methanococcus aeolicus Nankai-3]  
           gi|166229324|sp|A6UV53.1|RPOH_META3 RecName:
           Full=DNA-directed RNA polymerase subunit H 
           gi|150013924|gb|ABR56375.1| RNA polymerase Rpb5
           [Methanococcus aeolicus Nankai-3]  E=2e-17 s/c=1.37
           id=62% cov=100%
          Length = 67

 Score = 23.1 bits (50), Expect = 8.0
 Identities = 8/28 (28%), Positives = 19/28 (67%), Gaps = 1/28 (3%)

Query: 97  VMNEEEKKQLMLHYYRKQEEM-KLLESD 123
           V+++EE ++L+  Y  K +++ K+ + D
Sbjct: 5   VISKEEVQKLLAKYDIKIQQLPKIFDID 32


>d2qi2a2 c.55.4.2 (A:127-243) Cell division protein pelota
           {Thermoplasma acidophilum [TaxId: 2303]}
          Length = 117

 Score = 23.6 bits (51), Expect = 9.4
 Identities = 10/62 (16%), Positives = 22/62 (35%), Gaps = 2/62 (3%)

Query: 46  EVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGSGAPSREPVMNEEEKKQ 105
             ++    ++   G    RD+F R    +          ++  SGA   E  +   +  +
Sbjct: 57  NALKNYSNSIIILGPGFARDRFARYCAQRGVNVIGSFPANRTDSGA-VYE-FITSADGAK 114

Query: 106 LM 107
           L+
Sbjct: 115 LL 116


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.134    0.409 

Gapped
Lambda     K      H
   0.267   0.0657    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 588,798
Number of extensions: 24550
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 4
Length of query: 154
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 76
Effective length of database: 1,336,656
Effective search space: 101585856
Effective search space used: 101585856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (22.8 bits)