Query psy6854
Match_columns 148
No_of_seqs 85 out of 87
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 20:07:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6854.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6854hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mtn_B UBA80, ubcep1, ubiquiti 72.2 8.6 0.00029 24.3 5.2 35 1-35 3-37 (85)
2 3n3k_B Ubiquitin; hydrolase, p 68.7 6.9 0.00024 24.9 4.1 36 1-36 3-38 (85)
3 4dwf_A HLA-B-associated transc 67.0 9.4 0.00032 24.9 4.6 36 1-36 5-40 (90)
4 3m62_B UV excision repair prot 66.9 6.4 0.00022 27.2 3.9 36 1-36 1-36 (106)
5 2wyq_A HHR23A, UV excision rep 64.4 14 0.0005 23.4 5.1 34 1-34 5-38 (85)
6 1wh3_A 59 kDa 2'-5'-oligoadeny 64.1 14 0.00047 23.7 4.9 33 1-33 7-39 (87)
7 2dzi_A Ubiquitin-like protein 61.9 18 0.00062 22.6 5.1 34 1-34 7-40 (81)
8 3dbh_I NEDD8; cell cycle, acti 60.9 19 0.00066 22.9 5.2 34 2-35 13-46 (88)
9 4eew_A Large proline-rich prot 60.8 15 0.0005 23.8 4.6 33 2-34 18-50 (88)
10 4hcn_B Polyubiquitin, ubiquiti 57.0 19 0.00065 24.1 4.8 35 2-36 23-57 (98)
11 1wx7_A Ubiquilin 3; ubiquitin- 57.0 15 0.0005 25.0 4.3 35 1-36 17-51 (106)
12 2bwf_A Ubiquitin-like protein 56.9 21 0.00072 22.0 4.7 32 2-34 5-36 (77)
13 1wx8_A Riken cDNA 4931431F19; 56.2 17 0.00057 24.0 4.3 33 1-34 17-49 (96)
14 3phx_B Ubiquitin-like protein 54.9 29 0.00098 21.8 5.2 33 2-34 5-37 (79)
15 1wxv_A BAG-family molecular ch 54.6 25 0.00086 23.0 5.0 34 1-35 7-45 (92)
16 3v6c_B Ubiquitin; structural g 54.3 27 0.00093 22.8 5.1 34 2-35 18-51 (91)
17 1v86_A DNA segment, CHR 7, way 53.4 24 0.00083 23.6 4.8 35 1-36 17-51 (95)
18 3a9j_A Ubiquitin; protein comp 53.4 26 0.00091 21.3 4.7 33 3-35 2-34 (76)
19 2ojr_A Ubiquitin; lanthide-bin 53.2 27 0.00092 24.0 5.2 34 1-34 35-68 (111)
20 1wia_A Hypothetical ubiquitin- 52.0 23 0.00079 23.3 4.5 34 1-34 7-40 (95)
21 3vdz_A Ubiquitin-40S ribosomal 50.7 31 0.0011 23.8 5.2 35 1-35 35-69 (111)
22 1ndd_A NEDD8, protein (ubiquit 49.5 34 0.0011 20.8 4.7 32 3-34 2-33 (76)
23 3k9o_B Ubiquitin, UBB+1; E2-25 49.3 29 0.00099 22.6 4.6 34 3-36 3-36 (96)
24 4fbj_B NEDD8; effector-HOST ta 48.8 30 0.001 22.6 4.6 33 3-35 2-34 (88)
25 1lgh_B LH II, B800/850, light 47.9 9.1 0.00031 23.9 1.7 14 61-74 4-17 (45)
26 2hj8_A Interferon-induced 17 k 47.9 30 0.001 22.6 4.5 32 2-33 5-36 (88)
27 1yqb_A Ubiquilin 3; structural 47.6 26 0.00088 23.8 4.3 33 1-34 22-54 (100)
28 1nkz_B Light-harvesting protei 45.9 9.3 0.00032 23.4 1.5 12 63-74 1-12 (41)
29 1wy8_A NP95-like ring finger p 45.4 44 0.0015 21.4 5.0 33 1-33 7-41 (89)
30 2lxa_A Ubiquitin-like protein 44.9 23 0.00078 23.9 3.6 31 1-31 1-33 (87)
31 1wgg_A Ubiquitin carboxyl-term 44.9 29 0.00099 23.4 4.2 35 1-36 7-42 (96)
32 2uyz_B Small ubiquitin-related 44.3 41 0.0014 21.0 4.6 32 2-33 4-35 (79)
33 1wgd_A Homocysteine-responsive 43.4 39 0.0013 22.1 4.6 34 1-34 7-42 (93)
34 2klc_A Ubiquilin-1; ubiquitin- 42.9 51 0.0018 22.2 5.2 33 1-34 25-57 (101)
35 1j8c_A Ubiquitin-like protein 42.4 45 0.0015 23.7 5.1 33 1-34 32-64 (125)
36 1v5t_A 8430435I17RIK protein; 40.7 30 0.001 22.8 3.7 34 1-35 7-41 (90)
37 3m63_B Ubiquitin domain-contai 40.7 24 0.00083 24.0 3.2 32 2-34 29-60 (101)
38 1jy2_N Fibrinogen alpha chain; 40.2 4.3 0.00015 26.3 -0.7 13 75-88 12-24 (53)
39 1uh6_A Ubiquitin-like 5; beta- 40.1 41 0.0014 23.6 4.4 33 1-33 28-60 (100)
40 1v2y_A 3300001G02RIK protein; 39.7 60 0.0021 22.7 5.3 35 2-36 8-42 (105)
41 1sif_A Ubiquitin; hydrophobic 39.0 53 0.0018 21.3 4.7 32 3-34 11-42 (88)
42 1v5o_A 1700011N24RIK protein; 37.9 67 0.0023 21.5 5.2 35 1-35 7-45 (102)
43 1wyw_B Ubiquitin-like protein 37.6 46 0.0016 22.2 4.3 33 2-34 22-54 (97)
44 1ttn_A DC-UBP, dendritic cell- 37.1 49 0.0017 22.4 4.4 33 1-33 23-55 (106)
45 2l7r_A Ubiquitin-like protein 35.4 63 0.0022 21.3 4.6 31 1-33 19-49 (93)
46 3kqg_A Langerin, C-type lectin 34.8 30 0.001 24.9 3.1 35 19-53 3-37 (182)
47 1yx5_B Ubiquitin; proteasome, 33.7 72 0.0024 20.9 4.7 33 3-35 2-34 (98)
48 3u30_A Ubiquitin, linear DI-ub 32.8 72 0.0025 23.1 5.0 36 1-36 20-55 (172)
49 3rt3_B Ubiquitin-like protein 32.1 68 0.0023 22.8 4.6 35 2-36 3-37 (159)
50 3b1l_X E3 ubiquitin-protein li 38.1 9.7 0.00033 23.8 0.0 45 3-47 2-46 (76)
51 2kan_A Uncharacterized protein 31.8 84 0.0029 20.9 4.8 31 2-33 16-46 (94)
52 1wju_A NEDD8 ultimate buster-1 31.6 71 0.0024 22.3 4.5 33 1-33 15-51 (100)
53 2faz_A Ubiquitin-like containi 31.2 94 0.0032 19.1 4.9 32 2-33 3-36 (78)
54 2jpn_A DAR protein, ATP-depend 30.7 11 0.00039 26.1 0.2 30 11-40 8-45 (79)
55 2y6x_A PSB27, photosystem II 1 29.3 58 0.002 23.7 3.8 27 100-126 84-111 (113)
56 3plu_A Ubiquitin-like modifier 28.0 85 0.0029 21.9 4.4 33 1-33 21-53 (93)
57 1mhm_A Adometdc, samdc, S-aden 27.9 65 0.0022 26.9 4.3 34 3-36 175-213 (288)
58 1uel_A HHR23B, UV excision rep 27.2 1.1E+02 0.0037 20.0 4.7 33 3-35 2-34 (95)
59 2gow_A HCG-1 protein, ubiquiti 27.0 1.1E+02 0.0036 22.1 4.9 33 1-33 17-49 (125)
60 1v6e_A Cytoskeleton-associated 26.7 1.3E+02 0.0044 19.8 5.1 31 1-31 7-38 (95)
61 2kmf_A Photosystem II 11 kDa p 26.4 56 0.0019 23.8 3.3 25 100-124 88-113 (115)
62 3lf9_A 4E10_D0_1IS1A_001_C (T1 26.0 63 0.0021 24.0 3.5 26 97-122 27-56 (121)
63 1jl0_A Adometdc, S-adenosylmet 25.7 65 0.0022 27.4 4.0 34 3-36 241-276 (334)
64 2dzj_A Synaptic glycoprotein S 24.8 1.2E+02 0.0042 19.9 4.6 31 1-31 10-43 (88)
65 2kdb_A Homocysteine-responsive 24.3 1.3E+02 0.0045 20.4 4.8 32 2-33 24-57 (99)
66 1dx7_A Light-harvesting protei 24.2 12 0.0004 23.7 -0.7 13 62-74 8-20 (48)
67 2lj9_A CP12 domain-containing 23.9 16 0.00056 26.2 0.0 46 95-140 15-61 (99)
68 1fqj_C Retinal ROD rhodopsin-s 23.8 25 0.00085 21.5 0.8 11 47-57 32-42 (42)
69 3b08_A Polyubiquitin-C, ubiqui 23.6 1.4E+02 0.0049 20.4 5.0 31 3-33 78-108 (152)
70 2dzm_A FAS-associated factor 1 23.6 1.1E+02 0.0039 21.0 4.4 35 1-36 9-43 (100)
71 2nlz_A Cephalosporin acylase; 23.5 34 0.0012 30.7 1.9 102 31-140 129-246 (547)
72 3rt3_B Ubiquitin-like protein 23.2 1.5E+02 0.0052 20.8 5.2 31 3-33 83-113 (159)
73 4h51_A Aspartate aminotransfer 22.7 2E+02 0.0068 24.0 6.5 50 63-125 370-420 (420)
74 1w1n_A Phosphatidylinositol 3- 22.5 51 0.0017 18.8 2.0 19 19-37 4-22 (33)
75 1wgh_A Ubiquitin-like 3, HCG-1 22.1 1.6E+02 0.0054 20.9 5.0 32 2-33 17-48 (116)
76 2kk8_A Uncharacterized protein 21.8 1.7E+02 0.0058 18.9 5.2 32 3-34 12-43 (84)
77 2v36_A Gamma-glutamyltranspept 21.7 40 0.0014 28.7 1.9 96 37-140 136-241 (376)
78 3q3f_A Ribonuclease/ubiquitin 21.6 1.4E+02 0.0049 22.8 5.0 33 2-34 106-138 (189)
79 1we6_A Splicing factor, putati 21.5 1.8E+02 0.006 19.6 5.0 32 2-33 28-63 (111)
80 3ogn_A Odorant-binding protein 20.6 2.1E+02 0.0071 19.4 5.6 40 96-144 3-42 (124)
No 1
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=72.16 E-value=8.6 Score=24.34 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=29.0
Q ss_pred CeEEEeeccCCceeeeeecCcccHHHHHHHHHHHh
Q psy6854 1 MVILHVKHGDASQFLYETSTSTSIQQLLEEILNIY 35 (148)
Q Consensus 1 MVllHVK~gde~qFLyEtt~~~~ve~li~~lv~I~ 35 (148)
++.|+||.-+...|-++.+-+..|.+|...|.+..
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~ 37 (85)
T 3mtn_B 3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE 37 (85)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHH
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHH
Confidence 46789997777788999999999999998877644
No 2
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=68.68 E-value=6.9 Score=24.90 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=28.2
Q ss_pred CeEEEeeccCCceeeeeecCcccHHHHHHHHHHHhh
Q psy6854 1 MVILHVKHGDASQFLYETSTSTSIQQLLEEILNIYN 36 (148)
Q Consensus 1 MVllHVK~gde~qFLyEtt~~~~ve~li~~lv~I~N 36 (148)
++.|+||.-+...|-++.+.+..|.+|...|.+..+
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ 38 (85)
T 3n3k_B 3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEG 38 (85)
T ss_dssp -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHC
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC
Confidence 357899966667788999999999999988766543
No 3
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=67.00 E-value=9.4 Score=24.86 Aligned_cols=36 Identities=14% Similarity=0.146 Sum_probs=29.1
Q ss_pred CeEEEeeccCCceeeeeecCcccHHHHHHHHHHHhh
Q psy6854 1 MVILHVKHGDASQFLYETSTSTSIQQLLEEILNIYN 36 (148)
Q Consensus 1 MVllHVK~gde~qFLyEtt~~~~ve~li~~lv~I~N 36 (148)
++.|.||.-+...|-++..-+..|.+|...|.+..+
T Consensus 5 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g 40 (90)
T 4dwf_A 5 SLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVS 40 (90)
T ss_dssp EEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHT
T ss_pred EEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhC
Confidence 467899977777888999999999999987765543
No 4
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=66.86 E-value=6.4 Score=27.15 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=28.2
Q ss_pred CeEEEeeccCCceeeeeecCcccHHHHHHHHHHHhh
Q psy6854 1 MVILHVKHGDASQFLYETSTSTSIQQLLEEILNIYN 36 (148)
Q Consensus 1 MVllHVK~gde~qFLyEtt~~~~ve~li~~lv~I~N 36 (148)
|+.|.||.-....|-++..-+..|.+|...|....+
T Consensus 1 mm~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g 36 (106)
T 3m62_B 1 MVSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSIS 36 (106)
T ss_dssp --CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTT
T ss_pred CEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC
Confidence 788999975567799999999999999987776554
No 5
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=64.41 E-value=14 Score=23.44 Aligned_cols=34 Identities=18% Similarity=0.198 Sum_probs=28.2
Q ss_pred CeEEEeeccCCceeeeeecCcccHHHHHHHHHHH
Q psy6854 1 MVILHVKHGDASQFLYETSTSTSIQQLLEEILNI 34 (148)
Q Consensus 1 MVllHVK~gde~qFLyEtt~~~~ve~li~~lv~I 34 (148)
|+.|+||.-+...|-++..-+..|.+|...|.+.
T Consensus 5 ~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~ 38 (85)
T 2wyq_A 5 AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAE 38 (85)
T ss_dssp CEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHH
T ss_pred eEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhh
Confidence 5789999766678889999999999999877664
No 6
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=64.10 E-value=14 Score=23.72 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=26.8
Q ss_pred CeEEEeeccCCceeeeeecCcccHHHHHHHHHH
Q psy6854 1 MVILHVKHGDASQFLYETSTSTSIQQLLEEILN 33 (148)
Q Consensus 1 MVllHVK~gde~qFLyEtt~~~~ve~li~~lv~ 33 (148)
++.|.||.-+...|-++..-+..|.+|...|.+
T Consensus 7 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~ 39 (87)
T 1wh3_A 7 GIQVFVKNPDGGSYAYAINPNSFILGLKQQIED 39 (87)
T ss_dssp SEEEEEEETTTEEEEEEECSSSBHHHHHHHHHH
T ss_pred CEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHH
Confidence 467899976667888999999999999886654
No 7
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.89 E-value=18 Score=22.58 Aligned_cols=34 Identities=12% Similarity=0.056 Sum_probs=26.5
Q ss_pred CeEEEeeccCCceeeeeecCcccHHHHHHHHHHH
Q psy6854 1 MVILHVKHGDASQFLYETSTSTSIQQLLEEILNI 34 (148)
Q Consensus 1 MVllHVK~gde~qFLyEtt~~~~ve~li~~lv~I 34 (148)
++.|.||.-+...|-++...+..|.+|...|.+.
T Consensus 7 ~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~ 40 (81)
T 2dzi_A 7 GMQLTVKALQGRECSLQVPEDELVSTLKQLVSEK 40 (81)
T ss_dssp SEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHH
T ss_pred cEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH
Confidence 4678899544567888999999999998876553
No 8
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=60.89 E-value=19 Score=22.91 Aligned_cols=34 Identities=9% Similarity=0.207 Sum_probs=27.7
Q ss_pred eEEEeeccCCceeeeeecCcccHHHHHHHHHHHh
Q psy6854 2 VILHVKHGDASQFLYETSTSTSIQQLLEEILNIY 35 (148)
Q Consensus 2 VllHVK~gde~qFLyEtt~~~~ve~li~~lv~I~ 35 (148)
+.|+||.-+...|-++..-+..|.+|...|.+..
T Consensus 13 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~ 46 (88)
T 3dbh_I 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKE 46 (88)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHH
Confidence 5789997667788899999999999998776543
No 9
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=60.81 E-value=15 Score=23.79 Aligned_cols=33 Identities=15% Similarity=0.176 Sum_probs=27.0
Q ss_pred eEEEeeccCCceeeeeecCcccHHHHHHHHHHH
Q psy6854 2 VILHVKHGDASQFLYETSTSTSIQQLLEEILNI 34 (148)
Q Consensus 2 VllHVK~gde~qFLyEtt~~~~ve~li~~lv~I 34 (148)
+.|+||.-+...|-++..-+..|.+|...|.+.
T Consensus 18 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~ 50 (88)
T 4eew_A 18 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAAS 50 (88)
T ss_dssp EEEEEEETTSCEEEEEEETTCBHHHHHHHHHHH
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHH
Confidence 578999777778888999999999999876543
No 10
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=57.05 E-value=19 Score=24.09 Aligned_cols=35 Identities=17% Similarity=0.197 Sum_probs=28.3
Q ss_pred eEEEeeccCCceeeeeecCcccHHHHHHHHHHHhh
Q psy6854 2 VILHVKHGDASQFLYETSTSTSIQQLLEEILNIYN 36 (148)
Q Consensus 2 VllHVK~gde~qFLyEtt~~~~ve~li~~lv~I~N 36 (148)
+.|+||.-+...|-++..-+..|.+|...|.+..+
T Consensus 23 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g 57 (98)
T 4hcn_B 23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG 57 (98)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhC
Confidence 57899976667889999999999999987766543
No 11
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=56.98 E-value=15 Score=25.01 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=27.2
Q ss_pred CeEEEeeccCCceeeeeecCcccHHHHHHHHHHHhh
Q psy6854 1 MVILHVKHGDASQFLYETSTSTSIQQLLEEILNIYN 36 (148)
Q Consensus 1 MVllHVK~gde~qFLyEtt~~~~ve~li~~lv~I~N 36 (148)
|+.|+||.... .|-++..-+..|.+|...|.+..+
T Consensus 17 ~m~I~Vk~~~g-~~~l~v~~~~TV~~LK~~I~~~~g 51 (106)
T 1wx7_A 17 LIKVTVKTPKD-KEDFSVTDTCTIQQLKEEISQRFK 51 (106)
T ss_dssp EEEEEEECSSC-EEEEEEETTCCHHHHHHHHHHHHT
T ss_pred eEEEEEEeCCC-cEEEEECCCCcHHHHHHHHHHHHC
Confidence 57889996543 488899999999999988776543
No 12
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=56.89 E-value=21 Score=22.05 Aligned_cols=32 Identities=16% Similarity=0.309 Sum_probs=25.8
Q ss_pred eEEEeeccCCceeeeeecCcccHHHHHHHHHHH
Q psy6854 2 VILHVKHGDASQFLYETSTSTSIQQLLEEILNI 34 (148)
Q Consensus 2 VllHVK~gde~qFLyEtt~~~~ve~li~~lv~I 34 (148)
+.|.||. ....|-++..-+..|.+|...+.+.
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~ 36 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKA 36 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHH
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHH
Confidence 5678887 6677888999999999998876653
No 13
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=56.24 E-value=17 Score=24.03 Aligned_cols=33 Identities=9% Similarity=0.200 Sum_probs=26.8
Q ss_pred CeEEEeeccCCceeeeeecCcccHHHHHHHHHHH
Q psy6854 1 MVILHVKHGDASQFLYETSTSTSIQQLLEEILNI 34 (148)
Q Consensus 1 MVllHVK~gde~qFLyEtt~~~~ve~li~~lv~I 34 (148)
|+.|+||.. ...|-++...+..|.+|...|.+.
T Consensus 17 ~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~ 49 (96)
T 1wx8_A 17 IIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKY 49 (96)
T ss_dssp EEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHH
T ss_pred cEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHH
Confidence 467899976 567888999999999999876653
No 14
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=54.86 E-value=29 Score=21.78 Aligned_cols=33 Identities=12% Similarity=0.325 Sum_probs=26.8
Q ss_pred eEEEeeccCCceeeeeecCcccHHHHHHHHHHH
Q psy6854 2 VILHVKHGDASQFLYETSTSTSIQQLLEEILNI 34 (148)
Q Consensus 2 VllHVK~gde~qFLyEtt~~~~ve~li~~lv~I 34 (148)
..|+||.-+...|-++..-+..|.+|...+.+.
T Consensus 5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~ 37 (79)
T 3phx_B 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGL 37 (79)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHH
T ss_pred EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhh
Confidence 368899766778889999999999999876544
No 15
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=54.60 E-value=25 Score=22.98 Aligned_cols=34 Identities=12% Similarity=0.217 Sum_probs=25.3
Q ss_pred CeEEEeeccCCceeeeeecCc-----ccHHHHHHHHHHHh
Q psy6854 1 MVILHVKHGDASQFLYETSTS-----TSIQQLLEEILNIY 35 (148)
Q Consensus 1 MVllHVK~gde~qFLyEtt~~-----~~ve~li~~lv~I~ 35 (148)
|+.|+||.+ ...|-++...+ ..|.+|...|.+..
T Consensus 7 ~~~v~Vk~~-~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~ 45 (92)
T 1wxv_A 7 GLTVTVTHS-NEKHDLHVTSQQGSSEPVVQDLAQVVEEVI 45 (92)
T ss_dssp SEEEEEECS-SSEEEEEECCCSSSSSCBHHHHHHHHHHHT
T ss_pred eEEEEEEEC-CEEEEEEECCCcCcccCcHHHHHHHHHHHH
Confidence 688999975 45677788774 88999888665543
No 16
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=54.31 E-value=27 Score=22.78 Aligned_cols=34 Identities=15% Similarity=0.193 Sum_probs=27.7
Q ss_pred eEEEeeccCCceeeeeecCcccHHHHHHHHHHHh
Q psy6854 2 VILHVKHGDASQFLYETSTSTSIQQLLEEILNIY 35 (148)
Q Consensus 2 VllHVK~gde~qFLyEtt~~~~ve~li~~lv~I~ 35 (148)
..|+||.-+...|-++..-+..|.+|...|.+..
T Consensus 18 m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~ 51 (91)
T 3v6c_B 18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKE 51 (91)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHH
T ss_pred EEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhh
Confidence 5688996666788899999999999998776544
No 17
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=53.43 E-value=24 Score=23.65 Aligned_cols=35 Identities=14% Similarity=0.159 Sum_probs=27.5
Q ss_pred CeEEEeeccCCceeeeeecCcccHHHHHHHHHHHhh
Q psy6854 1 MVILHVKHGDASQFLYETSTSTSIQQLLEEILNIYN 36 (148)
Q Consensus 1 MVllHVK~gde~qFLyEtt~~~~ve~li~~lv~I~N 36 (148)
|+.|+||.+ ...|-++...+..|.+|...|....+
T Consensus 17 ~~~i~Vk~~-g~~~~i~v~~~~TV~~LK~~I~~~tg 51 (95)
T 1v86_A 17 LVDLKIIWN-KTKHDVKVPLDSTGSELKQKIHSITG 51 (95)
T ss_dssp CEEEEEEET-TEEEEEEECTTSBHHHHHHHHHHHHC
T ss_pred eEEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHHHC
Confidence 578999965 45777899999999999887766544
No 18
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=53.39 E-value=26 Score=21.30 Aligned_cols=33 Identities=18% Similarity=0.181 Sum_probs=26.3
Q ss_pred EEEeeccCCceeeeeecCcccHHHHHHHHHHHh
Q psy6854 3 ILHVKHGDASQFLYETSTSTSIQQLLEEILNIY 35 (148)
Q Consensus 3 llHVK~gde~qFLyEtt~~~~ve~li~~lv~I~ 35 (148)
.|.||.-+...|-++.+.+..|.+|...+.+..
T Consensus 2 ~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~ 34 (76)
T 3a9j_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE 34 (76)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHH
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHH
Confidence 578887666778899999999999998776543
No 19
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=53.21 E-value=27 Score=23.96 Aligned_cols=34 Identities=18% Similarity=0.211 Sum_probs=27.2
Q ss_pred CeEEEeeccCCceeeeeecCcccHHHHHHHHHHH
Q psy6854 1 MVILHVKHGDASQFLYETSTSTSIQQLLEEILNI 34 (148)
Q Consensus 1 MVllHVK~gde~qFLyEtt~~~~ve~li~~lv~I 34 (148)
++.|.||.-+...|-++.+.+..|.+|...|.+.
T Consensus 35 ~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~ 68 (111)
T 2ojr_A 35 AMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK 68 (111)
T ss_dssp CEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHH
T ss_pred eEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 4678999766678889999999999999866553
No 20
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=51.99 E-value=23 Score=23.32 Aligned_cols=34 Identities=9% Similarity=0.044 Sum_probs=27.9
Q ss_pred CeEEEeeccCCceeeeeecCcccHHHHHHHHHHH
Q psy6854 1 MVILHVKHGDASQFLYETSTSTSIQQLLEEILNI 34 (148)
Q Consensus 1 MVllHVK~gde~qFLyEtt~~~~ve~li~~lv~I 34 (148)
++.|.||..+...|-++..-+..|.+|...|...
T Consensus 7 ~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~ 40 (95)
T 1wia_A 7 GINVRLKFLNDTEELAVARPEDTVGTLKSKYFPG 40 (95)
T ss_dssp SEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSS
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhh
Confidence 4788999766678889999999999999876553
No 21
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=50.73 E-value=31 Score=23.76 Aligned_cols=35 Identities=17% Similarity=0.179 Sum_probs=28.4
Q ss_pred CeEEEeeccCCceeeeeecCcccHHHHHHHHHHHh
Q psy6854 1 MVILHVKHGDASQFLYETSTSTSIQQLLEEILNIY 35 (148)
Q Consensus 1 MVllHVK~gde~qFLyEtt~~~~ve~li~~lv~I~ 35 (148)
+..|+||.-+...|-++..-+..|.+|...|.+..
T Consensus 35 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~ 69 (111)
T 3vdz_A 35 AMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE 69 (111)
T ss_dssp CEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHH
T ss_pred cEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 35788997666788999999999999998776644
No 22
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=49.49 E-value=34 Score=20.80 Aligned_cols=32 Identities=9% Similarity=0.231 Sum_probs=25.6
Q ss_pred EEEeeccCCceeeeeecCcccHHHHHHHHHHH
Q psy6854 3 ILHVKHGDASQFLYETSTSTSIQQLLEEILNI 34 (148)
Q Consensus 3 llHVK~gde~qFLyEtt~~~~ve~li~~lv~I 34 (148)
.|.||.-+...|-++.+.+..|.+|...+.+.
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~ 33 (76)
T 1ndd_A 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEK 33 (76)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHHHHHHH
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHHHHHHH
Confidence 57888766667888999999999998876654
No 23
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=49.31 E-value=29 Score=22.61 Aligned_cols=34 Identities=18% Similarity=0.179 Sum_probs=28.4
Q ss_pred EEEeeccCCceeeeeecCcccHHHHHHHHHHHhh
Q psy6854 3 ILHVKHGDASQFLYETSTSTSIQQLLEEILNIYN 36 (148)
Q Consensus 3 llHVK~gde~qFLyEtt~~~~ve~li~~lv~I~N 36 (148)
.|+||.-+...|-++..-+..|.+|...|.+..+
T Consensus 3 ~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~g 36 (96)
T 3k9o_B 3 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG 36 (96)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhC
Confidence 6889977777888999999999999998876554
No 24
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=48.81 E-value=30 Score=22.60 Aligned_cols=33 Identities=9% Similarity=0.197 Sum_probs=26.8
Q ss_pred EEEeeccCCceeeeeecCcccHHHHHHHHHHHh
Q psy6854 3 ILHVKHGDASQFLYETSTSTSIQQLLEEILNIY 35 (148)
Q Consensus 3 llHVK~gde~qFLyEtt~~~~ve~li~~lv~I~ 35 (148)
.|.||.-+...|-++..-+..|.+|...|.+..
T Consensus 2 ~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~ 34 (88)
T 4fbj_B 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKE 34 (88)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHHHHHHHHHH
T ss_pred EEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHH
Confidence 578997677788999999999999988765543
No 25
>1lgh_B LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=47.86 E-value=9.1 Score=23.94 Aligned_cols=14 Identities=29% Similarity=0.527 Sum_probs=12.3
Q ss_pred ccCCCCHHHHHHhh
Q psy6854 61 DMLGLTDEQVEELK 74 (148)
Q Consensus 61 e~qGLtdeq~~el~ 74 (148)
.+-||||+|.+|++
T Consensus 4 s~tGLT~~EA~EfH 17 (45)
T 1lgh_B 4 SLSGLTEEEAIAVH 17 (45)
T ss_dssp CSSSCCHHHHHHHH
T ss_pred CcCCCCHHHHHHHH
Confidence 46799999999987
No 26
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=47.85 E-value=30 Score=22.55 Aligned_cols=32 Identities=13% Similarity=0.306 Sum_probs=26.0
Q ss_pred eEEEeeccCCceeeeeecCcccHHHHHHHHHH
Q psy6854 2 VILHVKHGDASQFLYETSTSTSIQQLLEEILN 33 (148)
Q Consensus 2 VllHVK~gde~qFLyEtt~~~~ve~li~~lv~ 33 (148)
+.|.||.-+...|-++..-+..|.+|...|.+
T Consensus 5 m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~ 36 (88)
T 2hj8_A 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSG 36 (88)
T ss_dssp EEEEEEETTSCEEEEEEESSSBHHHHHHHHHH
T ss_pred EEEEEECCCCCEEEEEECCCCcHHHHHHHHHH
Confidence 67899965557788899999999999887654
No 27
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=47.64 E-value=26 Score=23.78 Aligned_cols=33 Identities=27% Similarity=0.323 Sum_probs=25.8
Q ss_pred CeEEEeeccCCceeeeeecCcccHHHHHHHHHHH
Q psy6854 1 MVILHVKHGDASQFLYETSTSTSIQQLLEEILNI 34 (148)
Q Consensus 1 MVllHVK~gde~qFLyEtt~~~~ve~li~~lv~I 34 (148)
|+.|.||.... .|-++...+..|.+|...|.+.
T Consensus 22 ~m~I~Vk~~~g-~~~l~v~~~~TV~~LK~~I~~~ 54 (100)
T 1yqb_A 22 LIKVTVKTPKD-KEDFSVTDTCTIQQLKEEISQR 54 (100)
T ss_dssp EEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHH
T ss_pred eEEEEEEcCCC-cEEEEECCCCcHHHHHHHHHHH
Confidence 46789996544 4888999999999998876654
No 28
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=45.89 E-value=9.3 Score=23.42 Aligned_cols=12 Identities=58% Similarity=0.584 Sum_probs=10.6
Q ss_pred CCCCHHHHHHhh
Q psy6854 63 LGLTDEQVEELK 74 (148)
Q Consensus 63 qGLtdeq~~el~ 74 (148)
-||||+|.+|++
T Consensus 1 ~gLT~~EA~EfH 12 (41)
T 1nkz_B 1 ATLTAEQSEELH 12 (41)
T ss_dssp CCCCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 399999999987
No 29
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=45.36 E-value=44 Score=21.36 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=25.4
Q ss_pred CeEEEeeccCC-ceeeee-ecCcccHHHHHHHHHH
Q psy6854 1 MVILHVKHGDA-SQFLYE-TSTSTSIQQLLEEILN 33 (148)
Q Consensus 1 MVllHVK~gde-~qFLyE-tt~~~~ve~li~~lv~ 33 (148)
|+.|.||.-+. ..|-++ .+.+..|.+|...|.+
T Consensus 7 ~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~ 41 (89)
T 1wy8_A 7 GMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWA 41 (89)
T ss_dssp CEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHH
T ss_pred cEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHH
Confidence 56789996443 578884 9999999999887654
No 30
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=44.87 E-value=23 Score=23.87 Aligned_cols=31 Identities=32% Similarity=0.410 Sum_probs=25.8
Q ss_pred CeEEEeeccCCceeeeeec--CcccHHHHHHHH
Q psy6854 1 MVILHVKHGDASQFLYETS--TSTSIQQLLEEI 31 (148)
Q Consensus 1 MVllHVK~gde~qFLyEtt--~~~~ve~li~~l 31 (148)
|+.|.||.-....|-++.. -+..|.+|.+.|
T Consensus 1 mmqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I 33 (87)
T 2lxa_A 1 MVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHL 33 (87)
T ss_dssp CCEEEEEECSSSCEECCEECCTTCBHHHHHHHH
T ss_pred CEEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHH
Confidence 8899999877777888755 889999988866
No 31
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=44.86 E-value=29 Score=23.40 Aligned_cols=35 Identities=17% Similarity=0.199 Sum_probs=26.4
Q ss_pred CeEEEeeccCCceee-eeecCcccHHHHHHHHHHHhh
Q psy6854 1 MVILHVKHGDASQFL-YETSTSTSIQQLLEEILNIYN 36 (148)
Q Consensus 1 MVllHVK~gde~qFL-yEtt~~~~ve~li~~lv~I~N 36 (148)
|+.|+||.+ ...|. ++...+..|.+|...|.+..+
T Consensus 7 ~m~i~Vk~~-g~~~~~l~v~~~~TV~~lK~~I~~~tg 42 (96)
T 1wgg_A 7 GYSVTVKWG-KEKFEGVELNTDEPPMVFKAQLFALTG 42 (96)
T ss_dssp EEEEEEEET-TEEEEEEEEESSSCHHHHHHHHHHHTC
T ss_pred EEEEEEEEC-CEEEEEEEECCCCcHHHHHHHHHHHHC
Confidence 578999964 36774 899999999999886655443
No 32
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=44.34 E-value=41 Score=21.02 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=26.0
Q ss_pred eEEEeeccCCceeeeeecCcccHHHHHHHHHH
Q psy6854 2 VILHVKHGDASQFLYETSTSTSIQQLLEEILN 33 (148)
Q Consensus 2 VllHVK~gde~qFLyEtt~~~~ve~li~~lv~ 33 (148)
+.|.||.-+...|-++..-+.+|.+|...+.+
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~ 35 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQ 35 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHH
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHH
Confidence 45778866667889999999999999886655
No 33
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=43.41 E-value=39 Score=22.11 Aligned_cols=34 Identities=18% Similarity=0.162 Sum_probs=24.4
Q ss_pred CeEEEeeccCCc--eeeeeecCcccHHHHHHHHHHH
Q psy6854 1 MVILHVKHGDAS--QFLYETSTSTSIQQLLEEILNI 34 (148)
Q Consensus 1 MVllHVK~gde~--qFLyEtt~~~~ve~li~~lv~I 34 (148)
++.|+||..... .|-+++.-+..|.+|...|.+.
T Consensus 7 ~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~ 42 (93)
T 1wgd_A 7 GVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRV 42 (93)
T ss_dssp CCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHH
Confidence 467999965444 4555666889999998866554
No 34
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=42.90 E-value=51 Score=22.20 Aligned_cols=33 Identities=24% Similarity=0.291 Sum_probs=26.3
Q ss_pred CeEEEeeccCCceeeeeecCcccHHHHHHHHHHH
Q psy6854 1 MVILHVKHGDASQFLYETSTSTSIQQLLEEILNI 34 (148)
Q Consensus 1 MVllHVK~gde~qFLyEtt~~~~ve~li~~lv~I 34 (148)
++.|.||.. ...|-++...+..|.+|...|.+.
T Consensus 25 ~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~ 57 (101)
T 2klc_A 25 IMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKR 57 (101)
T ss_dssp CEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHH
T ss_pred eEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHH
Confidence 467889965 457888999999999999876654
No 35
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=42.38 E-value=45 Score=23.65 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=26.8
Q ss_pred CeEEEeeccCCceeeeeecCcccHHHHHHHHHHH
Q psy6854 1 MVILHVKHGDASQFLYETSTSTSIQQLLEEILNI 34 (148)
Q Consensus 1 MVllHVK~gde~qFLyEtt~~~~ve~li~~lv~I 34 (148)
++.|.||.. ...|-++...+..|.+|...|...
T Consensus 32 ~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~ 64 (125)
T 1j8c_A 32 IIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKR 64 (125)
T ss_dssp CEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHH
T ss_pred cEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHH
Confidence 477899976 567888999999999998876654
No 36
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=40.71 E-value=30 Score=22.80 Aligned_cols=34 Identities=15% Similarity=0.197 Sum_probs=25.4
Q ss_pred CeEEEeeccCCceeee-eecCcccHHHHHHHHHHHh
Q psy6854 1 MVILHVKHGDASQFLY-ETSTSTSIQQLLEEILNIY 35 (148)
Q Consensus 1 MVllHVK~gde~qFLy-Ett~~~~ve~li~~lv~I~ 35 (148)
|+.|+||.+ ...|-+ |.+.+..|.+|...|.+..
T Consensus 7 ~m~i~Vk~~-g~~~~i~~v~~~~TV~~lK~~I~~~~ 41 (90)
T 1v5t_A 7 GLPIIVKWG-GQEYSVTTLSEDDTVLDLKQFLKTLT 41 (90)
T ss_dssp SCCEEEEET-TEEEEECSCCSSSBHHHHHHHHHHHT
T ss_pred eEEEEEEEC-CEEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 467889964 356778 8888999999988665543
No 37
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=40.65 E-value=24 Score=24.02 Aligned_cols=32 Identities=16% Similarity=0.309 Sum_probs=25.1
Q ss_pred eEEEeeccCCceeeeeecCcccHHHHHHHHHHH
Q psy6854 2 VILHVKHGDASQFLYETSTSTSIQQLLEEILNI 34 (148)
Q Consensus 2 VllHVK~gde~qFLyEtt~~~~ve~li~~lv~I 34 (148)
+.|.||. ....|-++...+..|.+|.+.|.+.
T Consensus 29 i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~ 60 (101)
T 3m63_B 29 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKA 60 (101)
T ss_dssp CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHH
T ss_pred EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 5688996 5567888999999999998876543
No 38
>1jy2_N Fibrinogen alpha chain; fragment E, disulfide bonds, asymmetry, coiled- coil, beta-sheet, blood clotting; 1.40A {Bos taurus} SCOP: h.1.8.1 PDB: 1jy3_N
Probab=40.20 E-value=4.3 Score=26.31 Aligned_cols=13 Identities=38% Similarity=0.838 Sum_probs=9.5
Q ss_pred cccccCCcCCCCCC
Q psy6854 75 LRDDQGERCKPSGY 88 (148)
Q Consensus 75 l~d~w~~~c~p~G~ 88 (148)
-.++|+.|| |||=
T Consensus 12 ~d~dWg~KC-PsGC 24 (53)
T 1jy2_N 12 SDEDWNTKC-PSGC 24 (53)
T ss_dssp CGGGBTTEE-ECHH
T ss_pred cccccCCCC-CCcc
Confidence 357899999 5654
No 39
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=40.07 E-value=41 Score=23.62 Aligned_cols=33 Identities=15% Similarity=0.127 Sum_probs=25.9
Q ss_pred CeEEEeeccCCceeeeeecCcccHHHHHHHHHH
Q psy6854 1 MVILHVKHGDASQFLYETSTSTSIQQLLEEILN 33 (148)
Q Consensus 1 MVllHVK~gde~qFLyEtt~~~~ve~li~~lv~ 33 (148)
|+.|.||.-....|-+|+.-+..|.+|...|.+
T Consensus 28 mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~ 60 (100)
T 1uh6_A 28 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAA 60 (100)
T ss_dssp EEEEEEECSSSSCEEEEEETTSBHHHHHHHHHH
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHH
Confidence 788999944336788999999999999875543
No 40
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=39.67 E-value=60 Score=22.74 Aligned_cols=35 Identities=11% Similarity=0.101 Sum_probs=30.4
Q ss_pred eEEEeeccCCceeeeeecCcccHHHHHHHHHHHhh
Q psy6854 2 VILHVKHGDASQFLYETSTSTSIQQLLEEILNIYN 36 (148)
Q Consensus 2 VllHVK~gde~qFLyEtt~~~~ve~li~~lv~I~N 36 (148)
..|+||.-+...|-.|..-+..|.+|.+.|-+..+
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~ 42 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQ 42 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHH
T ss_pred EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhC
Confidence 57999999999999999999999999987766554
No 41
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=39.05 E-value=53 Score=21.34 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=25.7
Q ss_pred EEEeeccCCceeeeeecCcccHHHHHHHHHHH
Q psy6854 3 ILHVKHGDASQFLYETSTSTSIQQLLEEILNI 34 (148)
Q Consensus 3 llHVK~gde~qFLyEtt~~~~ve~li~~lv~I 34 (148)
.|.||.-+...|-++.+.+..|.+|...|.+.
T Consensus 11 ~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~ 42 (88)
T 1sif_A 11 QLFIKTLTGKTFTVEMEPSDTIENLKAKIQDK 42 (88)
T ss_dssp EEEEEETTSCEEEEECCTTSBHHHHHHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHHHHHHH
Confidence 56788666678889999999999999876553
No 42
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=37.87 E-value=67 Score=21.53 Aligned_cols=35 Identities=9% Similarity=-0.002 Sum_probs=26.5
Q ss_pred CeEEEeec--cC--CceeeeeecCcccHHHHHHHHHHHh
Q psy6854 1 MVILHVKH--GD--ASQFLYETSTSTSIQQLLEEILNIY 35 (148)
Q Consensus 1 MVllHVK~--gd--e~qFLyEtt~~~~ve~li~~lv~I~ 35 (148)
|+.|+||. ++ +..|-+|..-+..|.+|...|.+..
T Consensus 7 ~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~ 45 (102)
T 1v5o_A 7 GMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELES 45 (102)
T ss_dssp CEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHT
T ss_pred eEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56788885 32 3678889999999999988766543
No 43
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=37.62 E-value=46 Score=22.16 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=26.7
Q ss_pred eEEEeeccCCceeeeeecCcccHHHHHHHHHHH
Q psy6854 2 VILHVKHGDASQFLYETSTSTSIQQLLEEILNI 34 (148)
Q Consensus 2 VllHVK~gde~qFLyEtt~~~~ve~li~~lv~I 34 (148)
+.|.||.-+...|-|+..-+..|.+|...+..-
T Consensus 22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~ 54 (97)
T 1wyw_B 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR 54 (97)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHH
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH
Confidence 568888666678999999999999998866543
No 44
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=37.09 E-value=49 Score=22.41 Aligned_cols=33 Identities=3% Similarity=0.116 Sum_probs=25.9
Q ss_pred CeEEEeeccCCceeeeeecCcccHHHHHHHHHH
Q psy6854 1 MVILHVKHGDASQFLYETSTSTSIQQLLEEILN 33 (148)
Q Consensus 1 MVllHVK~gde~qFLyEtt~~~~ve~li~~lv~ 33 (148)
++.|.||.-....|-++..-+..|.+|...|..
T Consensus 23 ~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~ 55 (106)
T 1ttn_A 23 ECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHA 55 (106)
T ss_dssp SEEEEEEETTTEEEEEEECTTSHHHHHHHHHHH
T ss_pred eEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHH
Confidence 357889965457788899999999999887654
No 45
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=35.39 E-value=63 Score=21.29 Aligned_cols=31 Identities=13% Similarity=0.259 Sum_probs=24.2
Q ss_pred CeEEEeeccCCceeeeeecCcccHHHHHHHHHH
Q psy6854 1 MVILHVKHGDASQFLYETSTSTSIQQLLEEILN 33 (148)
Q Consensus 1 MVllHVK~gde~qFLyEtt~~~~ve~li~~lv~ 33 (148)
++.|.||.| ..|-++..-+..|.+|...|.+
T Consensus 19 ~m~I~Vk~g--~~~~l~v~~~~TV~~LK~~I~~ 49 (93)
T 2l7r_A 19 SMQLFVRAQ--ELHTFEVTGQETVAQIKAHVAS 49 (93)
T ss_dssp -CEEEEESS--SEEEEECCSSCBHHHHHHHHHH
T ss_pred cEEEEEECC--CEEEEEeCCCCcHHHHHHHHHH
Confidence 356788983 6778899999999999887654
No 46
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=34.78 E-value=30 Score=24.87 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=23.2
Q ss_pred cCcccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q psy6854 19 STSTSIQQLLEEILNIYNGRLKVYRVMAEMEELAK 53 (148)
Q Consensus 19 t~~~~ve~li~~lv~I~N~RlKi~rL~~e~eeLa~ 53 (148)
.+++.|+.|.+++-.+.++.-+|..|-+.++.|.+
T Consensus 3 ~l~~~~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~ 37 (182)
T 3kqg_A 3 TLNAQIPELKSDLEKASALNTKIRALQGSLENMSK 37 (182)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999998755
No 47
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=33.70 E-value=72 Score=20.94 Aligned_cols=33 Identities=18% Similarity=0.181 Sum_probs=26.3
Q ss_pred EEEeeccCCceeeeeecCcccHHHHHHHHHHHh
Q psy6854 3 ILHVKHGDASQFLYETSTSTSIQQLLEEILNIY 35 (148)
Q Consensus 3 llHVK~gde~qFLyEtt~~~~ve~li~~lv~I~ 35 (148)
.|.||.-+...|-++..-+..|.+|...|.+..
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~ 34 (98)
T 1yx5_B 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE 34 (98)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHT
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHH
Confidence 577887555678899999999999998776644
No 48
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=32.77 E-value=72 Score=23.11 Aligned_cols=36 Identities=17% Similarity=0.172 Sum_probs=28.9
Q ss_pred CeEEEeeccCCceeeeeecCcccHHHHHHHHHHHhh
Q psy6854 1 MVILHVKHGDASQFLYETSTSTSIQQLLEEILNIYN 36 (148)
Q Consensus 1 MVllHVK~gde~qFLyEtt~~~~ve~li~~lv~I~N 36 (148)
+..|+||.-....|-++..-+..|.+|...|....+
T Consensus 20 ~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g 55 (172)
T 3u30_A 20 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG 55 (172)
T ss_dssp CEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHC
T ss_pred cEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC
Confidence 467899965567788999999999999987766544
No 49
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=32.12 E-value=68 Score=22.76 Aligned_cols=35 Identities=26% Similarity=0.205 Sum_probs=28.4
Q ss_pred eEEEeeccCCceeeeeecCcccHHHHHHHHHHHhh
Q psy6854 2 VILHVKHGDASQFLYETSTSTSIQQLLEEILNIYN 36 (148)
Q Consensus 2 VllHVK~gde~qFLyEtt~~~~ve~li~~lv~I~N 36 (148)
..|+||.-....|-++..-+..|.+|...|....+
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g 37 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIG 37 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhC
Confidence 67899965567788999999999999987766543
No 50
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=38.12 E-value=9.7 Score=23.76 Aligned_cols=45 Identities=27% Similarity=0.263 Sum_probs=32.2
Q ss_pred EEEeeccCCceeeeeecCcccHHHHHHHHHHHhhhHHHHHHHHHH
Q psy6854 3 ILHVKHGDASQFLYETSTSTSIQQLLEEILNIYNGRLKVYRVMAE 47 (148)
Q Consensus 3 llHVK~gde~qFLyEtt~~~~ve~li~~lv~I~N~RlKi~rL~~e 47 (148)
.|.||..+...|-++...+..|.+|...+.+..+--..-+||...
T Consensus 2 ~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~ 46 (76)
T 3b1l_X 2 IVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFA 46 (76)
Confidence 467886566678889999999999999888766544444444443
No 51
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=31.83 E-value=84 Score=20.87 Aligned_cols=31 Identities=23% Similarity=0.325 Sum_probs=24.7
Q ss_pred eEEEeeccCCceeeeeecCcccHHHHHHHHHH
Q psy6854 2 VILHVKHGDASQFLYETSTSTSIQQLLEEILN 33 (148)
Q Consensus 2 VllHVK~gde~qFLyEtt~~~~ve~li~~lv~ 33 (148)
+.|.||.... .|-++.+.+..|.+|...|.+
T Consensus 16 ~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~ 46 (94)
T 2kan_A 16 IHVTVKFPSK-QFTVEVDRTETVSSLKDKIHI 46 (94)
T ss_dssp EEEEEECSSC-EEEEEECTTCBHHHHHHHHHH
T ss_pred EEEEEEcCCc-EEEEEECCCCcHHHHHHHHHH
Confidence 5788996554 788899999999999886554
No 52
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=31.58 E-value=71 Score=22.33 Aligned_cols=33 Identities=18% Similarity=0.142 Sum_probs=25.5
Q ss_pred CeEEEeeccC----CceeeeeecCcccHHHHHHHHHH
Q psy6854 1 MVILHVKHGD----ASQFLYETSTSTSIQQLLEEILN 33 (148)
Q Consensus 1 MVllHVK~gd----e~qFLyEtt~~~~ve~li~~lv~ 33 (148)
|.-|+|+... ...|.+|...+..|.+|...|.+
T Consensus 15 ~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~ 51 (100)
T 1wju_A 15 IATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAE 51 (100)
T ss_dssp EEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHH
T ss_pred eEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHH
Confidence 4567787433 57999999999999999886543
No 53
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=31.19 E-value=94 Score=19.12 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=23.3
Q ss_pred eEEEeeccCCce-eeee-ecCcccHHHHHHHHHH
Q psy6854 2 VILHVKHGDASQ-FLYE-TSTSTSIQQLLEEILN 33 (148)
Q Consensus 2 VllHVK~gde~q-FLyE-tt~~~~ve~li~~lv~ 33 (148)
..|.||.-+... |-++ .+.+..|.+|...+.+
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~ 36 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQE 36 (78)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHH
T ss_pred EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHH
Confidence 467888644444 4788 8899999999886544
No 54
>2jpn_A DAR protein, ATP-dependent DNA helicase UVSW; bacteriophage helicase, hydrolase; NMR {Enterobacteria phage T4}
Probab=30.68 E-value=11 Score=26.05 Aligned_cols=30 Identities=40% Similarity=0.621 Sum_probs=22.4
Q ss_pred CceeeeeecCcccHHHH--------HHHHHHHhhhHHH
Q psy6854 11 ASQFLYETSTSTSIQQL--------LEEILNIYNGRLK 40 (148)
Q Consensus 11 e~qFLyEtt~~~~ve~l--------i~~lv~I~N~RlK 40 (148)
..|||||+++..-+..+ +.+|=..|+.|.|
T Consensus 8 f~~~l~EAaIe~Fm~KI~sC~T~dGl~ELEkyY~kR~K 45 (79)
T 2jpn_A 8 FKQFLYEASIDEFMGKIASCQTLEGLEELEAYYKKRVK 45 (79)
T ss_dssp SSHHHHHHTTSSHHHHHHTCCSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHhhh
Confidence 57899999887655544 5677778888766
No 55
>2y6x_A PSB27, photosystem II 11 KD protein; photosynthesis; 1.60A {Thermosynechococcus elongatus}
Probab=29.29 E-value=58 Score=23.69 Aligned_cols=27 Identities=15% Similarity=0.368 Sum_probs=23.0
Q ss_pred CCCC-ChHHHHHHHHHHHHHHHhhhHHh
Q psy6854 100 GYQP-PIKMQDLIKTTIEEVKNKISKTL 126 (148)
Q Consensus 100 G~ap-~~~~~~vL~~t~~eAk~~isK~q 126 (148)
|.+| +++.++.|..-+..|+.++.+-.
T Consensus 84 g~~PlPek~k~Rl~~el~~AE~al~Rg~ 111 (113)
T 2y6x_A 84 PNRPLPEKLKARLEQEFKQVELALDREA 111 (113)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 5667 88999999999999999987643
No 56
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=28.04 E-value=85 Score=21.86 Aligned_cols=33 Identities=9% Similarity=0.031 Sum_probs=27.2
Q ss_pred CeEEEeeccCCceeeeeecCcccHHHHHHHHHH
Q psy6854 1 MVILHVKHGDASQFLYETSTSTSIQQLLEEILN 33 (148)
Q Consensus 1 MVllHVK~gde~qFLyEtt~~~~ve~li~~lv~ 33 (148)
|..|+||.-...-+-+++.-+..|.+|.+.|.+
T Consensus 21 mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~ 53 (93)
T 3plu_A 21 MIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSL 53 (93)
T ss_dssp EEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH
T ss_pred eEEEEEECCCCCEEEEEECCcCHHHHHHHHHHH
Confidence 678999966667888999999999999886543
No 57
>1mhm_A Adometdc, samdc, S-adenosylmethionine decarboxylase; covalent pyruvoyl group, lyase; 2.30A {Solanum tuberosum} SCOP: d.156.1.1
Probab=27.89 E-value=65 Score=26.89 Aligned_cols=34 Identities=18% Similarity=0.464 Sum_probs=26.2
Q ss_pred EEEeeccCCcee-eeeecC----cccHHHHHHHHHHHhh
Q psy6854 3 ILHVKHGDASQF-LYETST----STSIQQLLEEILNIYN 36 (148)
Q Consensus 3 llHVK~gde~qF-LyEtt~----~~~ve~li~~lv~I~N 36 (148)
-|||-..+..-| =|||++ .....+|++.++++++
T Consensus 175 TIHVTPE~~~SYaSFETn~~~~~~~~~~~lv~~Vl~~F~ 213 (288)
T 1mhm_A 175 TIHITPEDGFTYASFESVGYNPKTMELGPLVERVLACFE 213 (288)
T ss_dssp EEEEECCTTSCEEEEEEESCCTTTSCHHHHHHHHHHHHC
T ss_pred EEEeCCCCCCeeEEEEecCCCcccccHHHHHHHHHheeC
Confidence 489988876555 499965 2678899999999754
No 58
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=27.23 E-value=1.1e+02 Score=20.04 Aligned_cols=33 Identities=15% Similarity=0.181 Sum_probs=26.4
Q ss_pred EEEeeccCCceeeeeecCcccHHHHHHHHHHHh
Q psy6854 3 ILHVKHGDASQFLYETSTSTSIQQLLEEILNIY 35 (148)
Q Consensus 3 llHVK~gde~qFLyEtt~~~~ve~li~~lv~I~ 35 (148)
.|.||.-+...|-++...+..|.+|...|.+.+
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~ 34 (95)
T 1uel_A 2 QVTLKTLQQQTFKIDIDPEETVKALKEKIESEK 34 (95)
T ss_dssp EEEEEETTCCEEEEECCTTSBHHHHHHHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhc
Confidence 578897666788899999999999998776553
No 59
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=26.98 E-value=1.1e+02 Score=22.07 Aligned_cols=33 Identities=12% Similarity=0.133 Sum_probs=26.7
Q ss_pred CeEEEeeccCCceeeeeecCcccHHHHHHHHHH
Q psy6854 1 MVILHVKHGDASQFLYETSTSTSIQQLLEEILN 33 (148)
Q Consensus 1 MVllHVK~gde~qFLyEtt~~~~ve~li~~lv~ 33 (148)
|+.|.||.-....|-+|..-+..|.+|.+.|.+
T Consensus 17 ~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~ 49 (125)
T 2gow_A 17 MINLRLILVSGKTKEFLFSPNDSASDIAKHVYD 49 (125)
T ss_dssp CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHS
T ss_pred eEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHH
Confidence 478899966668899999999999999875543
No 60
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=26.67 E-value=1.3e+02 Score=19.76 Aligned_cols=31 Identities=16% Similarity=0.094 Sum_probs=20.6
Q ss_pred CeEEEeeccCCc-eeeeeecCcccHHHHHHHH
Q psy6854 1 MVILHVKHGDAS-QFLYETSTSTSIQQLLEEI 31 (148)
Q Consensus 1 MVllHVK~gde~-qFLyEtt~~~~ve~li~~l 31 (148)
||-|+|+..... .|=.+.+.+..|.+|...|
T Consensus 7 ~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki 38 (95)
T 1v6e_A 7 GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKL 38 (95)
T ss_dssp CEEEEEEETTSSSCEEEEECTTSBHHHHHHHH
T ss_pred EEEEEEEECCCCeeEEEEcCccCHHHHHHHHH
Confidence 688999965433 2445666677888877644
No 61
>2kmf_A Photosystem II 11 kDa protein; PSB27, structure, helical bundle, cyanobacteria, photosynthesis; NMR {Synechocystis SP} PDB: 2knd_A
Probab=26.36 E-value=56 Score=23.82 Aligned_cols=25 Identities=20% Similarity=0.512 Sum_probs=21.7
Q ss_pred CCCC-ChHHHHHHHHHHHHHHHhhhH
Q psy6854 100 GYQP-PIKMQDLIKTTIEEVKNKISK 124 (148)
Q Consensus 100 G~ap-~~~~~~vL~~t~~eAk~~isK 124 (148)
|.+| +++.++.|..-+..|++++.+
T Consensus 88 g~~PlPek~k~Rl~~el~~AE~al~r 113 (115)
T 2kmf_A 88 GARPIPEKLKKRLQLEFTQAERSIER 113 (115)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 5667 889999999999999999875
No 62
>3lf9_A 4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immune system; 2.00A {Artificial gene}
Probab=26.03 E-value=63 Score=23.96 Aligned_cols=26 Identities=12% Similarity=0.148 Sum_probs=18.1
Q ss_pred CCCCCCCChHHH----HHHHHHHHHHHHhh
Q psy6854 97 RRNGYQPPIKMQ----DLIKTTIEEVKNKI 122 (148)
Q Consensus 97 rR~G~ap~~~~~----~vL~~t~~eAk~~i 122 (148)
-|||.+|.++-+ ++..+-.++||-.|
T Consensus 27 ~~~~~plTEERRKeLVK~akk~aEeaKVAI 56 (121)
T 3lf9_A 27 VRTGGGGTEERRKDLVKIVRGEAEGGRVAV 56 (121)
T ss_dssp CCCSSBCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 499999999554 44555566776665
No 63
>1jl0_A Adometdc, S-adenosylmethionine decarboxylase proenzyme; spermidine biosynthesis, lyase, pyruvate, sandwich, allosteric enzyme, pyruvoyl; 1.50A {Homo sapiens} SCOP: d.156.1.1 PDB: 1msv_A 1i7b_A* 1i79_A* 1i72_A* 1i7c_A* 1i7m_A* 3dz6_A* 3dz2_A* 3dz5_A* 3dz4_A* 3dz7_A* 3h0w_A* 3h0v_A* 1jen_A 3dz3_A* 3ep9_A 3ep6_A* 3ep3_A* 3ep8_A* 3ep5_A* ...
Probab=25.72 E-value=65 Score=27.41 Aligned_cols=34 Identities=15% Similarity=0.412 Sum_probs=25.8
Q ss_pred EEEeeccCCcee-eeeecCcc-cHHHHHHHHHHHhh
Q psy6854 3 ILHVKHGDASQF-LYETSTST-SIQQLLEEILNIYN 36 (148)
Q Consensus 3 llHVK~gde~qF-LyEtt~~~-~ve~li~~lv~I~N 36 (148)
-|||-..+..-| =|||++.. ...+|++.++++++
T Consensus 241 TIHVTPE~~~SYaSFETN~~~~~~~~lv~~Vl~~F~ 276 (334)
T 1jl0_A 241 TIAITPEPEFSYVSFETNLSQTSYDDLIRKVVEVFK 276 (334)
T ss_dssp EEEEECCTTSCEEEEEECCCCSCSHHHHHHHHHHHC
T ss_pred EEEecCCCCCeeEEEEcCcccccHHHHHHHHHheeC
Confidence 489998877666 49998874 45788888888653
No 64
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.77 E-value=1.2e+02 Score=19.93 Aligned_cols=31 Identities=6% Similarity=0.120 Sum_probs=21.8
Q ss_pred CeEEEeeccCCceee--e-eecCcccHHHHHHHH
Q psy6854 1 MVILHVKHGDASQFL--Y-ETSTSTSIQQLLEEI 31 (148)
Q Consensus 1 MVllHVK~gde~qFL--y-Ett~~~~ve~li~~l 31 (148)
|..|.||.-....|+ + |..-+..|.+|...+
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I 43 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLF 43 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHH
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHH
Confidence 577889954444555 4 788888998887643
No 65
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=24.33 E-value=1.3e+02 Score=20.42 Aligned_cols=32 Identities=16% Similarity=0.124 Sum_probs=24.2
Q ss_pred eEEEeeccCCc--eeeeeecCcccHHHHHHHHHH
Q psy6854 2 VILHVKHGDAS--QFLYETSTSTSIQQLLEEILN 33 (148)
Q Consensus 2 VllHVK~gde~--qFLyEtt~~~~ve~li~~lv~ 33 (148)
+.|.||..+.. .|-++...+..|.+|.+.|.+
T Consensus 24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~ 57 (99)
T 2kdb_A 24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSN 57 (99)
T ss_dssp EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHH
T ss_pred EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHH
Confidence 57889964433 578899999999999885543
No 66
>1dx7_A Light-harvesting protein B-875-beta chain; bacteriochlorophyll binding, membrane protein, photosynthesis; NMR {Rhodobacter sphaeroides} SCOP: f.3.1.1 PDB: 1jo5_A
Probab=24.15 E-value=12 Score=23.73 Aligned_cols=13 Identities=62% Similarity=0.836 Sum_probs=11.3
Q ss_pred cCCCCHHHHHHhh
Q psy6854 62 MLGLTDEQVEELK 74 (148)
Q Consensus 62 ~qGLtdeq~~el~ 74 (148)
+.|||++|.+|++
T Consensus 8 ~tGLT~~EA~EfH 20 (48)
T 1dx7_A 8 YTGLTDEQAQELH 20 (48)
T ss_dssp HHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHH
Confidence 4699999999987
No 67
>2lj9_A CP12 domain-containing protein 2; helix, protein binding, intrinsically disordered protein; NMR {Arabidopsis thaliana}
Probab=23.93 E-value=16 Score=26.20 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=0.0
Q ss_pred CCCCCCCCCCh-HHHHHHHHHHHHHHHhhhHHhhhhccccCHHHHHh
Q psy6854 95 IGRRNGYQPPI-KMQDLIKTTIEEVKNKISKTLVERNQCLTEAVVQE 140 (148)
Q Consensus 95 ~grR~G~ap~~-~~~~vL~~t~~eAk~~isK~qv~~~~~lT~~~l~E 140 (148)
.||+.+.+|.. ...+.|.+++.+|+++-+.......-..-|+.|.|
T Consensus 15 ~~~~~~~~p~~~~L~e~Ie~ai~eAr~~Ca~g~~S~eCa~AWd~VEE 61 (99)
T 2lj9_A 15 VPRGSHMAAPEGGISDVVEKSIKEAQETCAGDPVSGECVAAWDEVEE 61 (99)
T ss_dssp -----------------------------------------------
T ss_pred cCccccCCCchHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 46677777755 78899999999999986643444444455655554
No 68
>1fqj_C Retinal ROD rhodopsin-sensitive CGMP 3',5'- cyclic phosphodiesterase gamma-subunit...; RGS9, transducin, effector, pdegamma, G protein; HET: GDP; 2.02A {Bos taurus} SCOP: j.51.1.1
Probab=23.82 E-value=25 Score=21.54 Aligned_cols=11 Identities=45% Similarity=0.700 Sum_probs=9.1
Q ss_pred HHHHHHhcCCC
Q psy6854 47 EMEELAKHGTF 57 (148)
Q Consensus 47 e~eeLa~hG~~ 57 (148)
|+.+||+||+.
T Consensus 32 EL~eLAqygII 42 (42)
T 1fqj_C 32 ELHELAQYGII 42 (42)
T ss_dssp CHHHHHHTTCC
T ss_pred hHHHHhhcccC
Confidence 67899999974
No 69
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=23.65 E-value=1.4e+02 Score=20.38 Aligned_cols=31 Identities=19% Similarity=0.244 Sum_probs=24.4
Q ss_pred EEEeeccCCceeeeeecCcccHHHHHHHHHH
Q psy6854 3 ILHVKHGDASQFLYETSTSTSIQQLLEEILN 33 (148)
Q Consensus 3 llHVK~gde~qFLyEtt~~~~ve~li~~lv~ 33 (148)
.|+||.-+...|-++...+..|.+|...+..
T Consensus 78 ~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~ 108 (152)
T 3b08_A 78 QIFVKTLTGKTITLEVEPSDTIENVKAKIQD 108 (152)
T ss_dssp EEEEEESSSCEEEEEECTTCBHHHHHHHHHH
T ss_pred ceeeeecCCCEEEEEeCCCCcHHHHHHHHHH
Confidence 4677765667788899999999999886654
No 70
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.61 E-value=1.1e+02 Score=21.01 Aligned_cols=35 Identities=11% Similarity=0.110 Sum_probs=25.8
Q ss_pred CeEEEeeccCCceeeeeecCcccHHHHHHHHHHHhh
Q psy6854 1 MVILHVKHGDASQFLYETSTSTSIQQLLEEILNIYN 36 (148)
Q Consensus 1 MVllHVK~gde~qFLyEtt~~~~ve~li~~lv~I~N 36 (148)
|+.+.||.+. ..|-++..-+..|.+|.+.|.+.-+
T Consensus 9 m~~~~vk~~G-k~~~v~v~~~~TV~~LK~~I~~~tg 43 (100)
T 2dzm_A 9 MLDFRVEYRD-RNVDVVLEDTCTVGEIKQILENELQ 43 (100)
T ss_dssp EEEEEEECSS-CEEEEEEETTSBHHHHHHHHHHHHC
T ss_pred eEEEEEEeCC-eEEEEEECCCCcHHHHHHHHHHHHC
Confidence 6778888654 4677888888999988876654433
No 71
>2nlz_A Cephalosporin acylase; structural genomics, protein structure initiative, PSI, nysgxrc; 2.70A {Bacillus halodurans} SCOP: d.153.1.6
Probab=23.47 E-value=34 Score=30.66 Aligned_cols=102 Identities=15% Similarity=0.111 Sum_probs=63.5
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHhcCCCCCCccCCCCHHHHHHhhcccc------cCCcCCCCCCccCCCCCCCCCCCCC-
Q psy6854 31 ILNIYNGRLKVYRVMAEMEELAKHGTFLPPDMLGLTDEQVEELKLRDD------QGERCKPSGYIENKDPIGRRNGYQP- 103 (148)
Q Consensus 31 lv~I~N~RlKi~rL~~e~eeLa~hG~~~Ppe~qGLtdeq~~el~l~d~------w~~~c~p~G~~~~kD~~grR~G~ap- 103 (148)
+.+-| |+|...+|.....+||+.|....|.+...-......+.-.++ | -.+|.+|-...+-|.--
T Consensus 129 a~~~~-G~Lpw~~ll~PAI~lA~~Gf~Vs~~la~~~~~~~~~l~~~p~~~~~~~~-------~~~f~~~G~~~~~G~~~~ 200 (547)
T 2nlz_A 129 LAKMY-GNLPLAASLAPAIRYAEEGYPVTPTLAKYWKAAYDRVKTEWTDDVYQPW-------FDTFAPKGRAPRVGEVWR 200 (547)
T ss_dssp HHHHH-CSSCHHHHTHHHHHHHHHCEECCHHHHHHHHHHHHHHHHHCCSSTTHHH-------HHHHCTTSSCCCTTCEEC
T ss_pred HHHHh-CCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHhcCCcccchhhH-------HHHcccCCccCCCCCEec
Confidence 33444 899999999999999999998877654433322223332222 2 13355554344555433
Q ss_pred ChHHHHHHHHHHHH---------HHHhhhHHhhhhccccCHHHHHh
Q psy6854 104 PIKMQDLIKTTIEE---------VKNKISKTLVERNQCLTEAVVQE 140 (148)
Q Consensus 104 ~~~~~~vL~~t~~e---------Ak~~isK~qv~~~~~lT~~~l~E 140 (148)
+|+.+++|++-+++ .-+.|.+..-..+-.||.+.|..
T Consensus 201 ~p~LA~TL~~IA~~G~~~FY~G~iA~~iv~~~~~~GG~lt~~DLa~ 246 (547)
T 2nlz_A 201 SQGHADTLRSIAESNGESFYRGELADQIHAFFDKHGGYLTKEDLAC 246 (547)
T ss_dssp CHHHHHHHHHHHTTTTHHHHHSHHHHHHHHHHHHTTCCCCHHHHHT
T ss_pred CHHHHHHHHHHHHhCchhhcCCHHHHHHHHHHHhcCCCCCHHHHhh
Confidence 67999999887764 12233444445677788888764
No 72
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=23.17 E-value=1.5e+02 Score=20.83 Aligned_cols=31 Identities=13% Similarity=0.296 Sum_probs=24.8
Q ss_pred EEEeeccCCceeeeeecCcccHHHHHHHHHH
Q psy6854 3 ILHVKHGDASQFLYETSTSTSIQQLLEEILN 33 (148)
Q Consensus 3 llHVK~gde~qFLyEtt~~~~ve~li~~lv~ 33 (148)
.|+||.-+...|-++..-+..|.+|...+..
T Consensus 83 ~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~ 113 (159)
T 3rt3_B 83 SILVRNNKGRSSTYEVRLTQTVAHLKQQVSG 113 (159)
T ss_dssp EEEEECTTSCEEEEEECTTSBHHHHHHHHHH
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence 4677866667888999999999999886643
No 73
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=22.66 E-value=2e+02 Score=24.04 Aligned_cols=50 Identities=20% Similarity=0.281 Sum_probs=28.4
Q ss_pred CCCCHHHHHHhhcccccCCcCCCCCCccCCCCCCCCCCCC-CChHHHHHHHHHHHHHHHhhhHH
Q psy6854 63 LGLTDEQVEELKLRDDQGERCKPSGYIENKDPIGRRNGYQ-PPIKMQDLIKTTIEEVKNKISKT 125 (148)
Q Consensus 63 qGLtdeq~~el~l~d~w~~~c~p~G~~~~kD~~grR~G~a-p~~~~~~vL~~t~~eAk~~isK~ 125 (148)
-|||.+|++-|+ + .+-.-+|+| |-..+ .+++--+-+.+++.+|-+-|+|+
T Consensus 370 ~gls~e~v~~L~--e-~~Vy~~~~g----------Ris~Agl~~~ni~~~a~aI~~vvr~i~re 420 (420)
T 4h51_A 370 LGLSKAQCEYCQ--N-HNIFITVSG----------RANMAGLTHETALMLAQTINDAVRNVNRE 420 (420)
T ss_dssp CCCCHHHHHHHH--H-TTEECCTTC----------EEEGGGCCHHHHHHHHHHHHHHHC-----
T ss_pred cCcCHHHHHHHH--h-CCEEEcCCC----------EEEeccCCHHHHHHHHHHHHHHHHHhhcC
Confidence 689999987654 2 111122322 55555 47766677888888888777764
No 74
>1w1n_A Phosphatidylinositol 3-kinase TOR1; target of rapamycin, Ser/Thr kinase, redox-regulation, disulfide bond, transferase; NMR {Saccharomyces cerevisiae} PDB: 2kio_A 2kit_A
Probab=22.50 E-value=51 Score=18.84 Aligned_cols=19 Identities=11% Similarity=0.225 Sum_probs=15.9
Q ss_pred cCcccHHHHHHHHHHHhhh
Q psy6854 19 STSTSIQQLLEEILNIYNG 37 (148)
Q Consensus 19 t~~~~ve~li~~lv~I~N~ 37 (148)
+|...|+.||++-+...|+
T Consensus 4 sv~~QV~~LI~~At~~~NL 22 (33)
T 1w1n_A 4 DVPEQVDKLIQQATSIERL 22 (33)
T ss_dssp CSTHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCHHHH
Confidence 6778899999998888875
No 75
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=22.10 E-value=1.6e+02 Score=20.87 Aligned_cols=32 Identities=9% Similarity=0.093 Sum_probs=25.8
Q ss_pred eEEEeeccCCceeeeeecCcccHHHHHHHHHH
Q psy6854 2 VILHVKHGDASQFLYETSTSTSIQQLLEEILN 33 (148)
Q Consensus 2 VllHVK~gde~qFLyEtt~~~~ve~li~~lv~ 33 (148)
+.|+||.-....|-||..-+..|.+|.+.|.+
T Consensus 17 m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~ 48 (116)
T 1wgh_A 17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYD 48 (116)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHH
T ss_pred EEEEEEeCCCCEEEEEECCcCHHHHHHHHHHH
Confidence 67889865557899999999999999886544
No 76
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=21.84 E-value=1.7e+02 Score=18.88 Aligned_cols=32 Identities=16% Similarity=0.150 Sum_probs=24.9
Q ss_pred EEEeeccCCceeeeeecCcccHHHHHHHHHHH
Q psy6854 3 ILHVKHGDASQFLYETSTSTSIQQLLEEILNI 34 (148)
Q Consensus 3 llHVK~gde~qFLyEtt~~~~ve~li~~lv~I 34 (148)
.|.||.-....|-++..-+..|.+|...|.+.
T Consensus 12 ~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~ 43 (84)
T 2kk8_A 12 KFLVENLNGSSFELEVDYRDTLLVVKQKIERS 43 (84)
T ss_dssp EEEEEETTSCEEEEEECTTSBHHHHHHHHHHH
T ss_pred EEEEEecCCcEEEEEECCCChHHHHHHHHHHH
Confidence 56777655678888999999999999866544
No 77
>2v36_A Gamma-glutamyltranspeptidase large chain; transferase, glutathione biosynthesis, gamma-glutamyl transferase, acyltransferase, zymogen; 1.85A {Bacillus subtilis} PDB: 3a75_A*
Probab=21.69 E-value=40 Score=28.71 Aligned_cols=96 Identities=13% Similarity=0.108 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCCccCCCCHHHHHHhhcccccCCcCCCCCCccCCCCCCCCCCCCC-ChHHHHHHHHHH
Q psy6854 37 GRLKVYRVMAEMEELAKHGTFLPPDMLGLTDEQVEELKLRDDQGERCKPSGYIENKDPIGRRNGYQP-PIKMQDLIKTTI 115 (148)
Q Consensus 37 ~RlKi~rL~~e~eeLa~hG~~~Ppe~qGLtdeq~~el~l~d~w~~~c~p~G~~~~kD~~grR~G~ap-~~~~~~vL~~t~ 115 (148)
|+|...+|.....+||+.|....|.+...-......+.- +.| -.+|.+|-...+.|.-- +|+++++|++-+
T Consensus 136 G~Lpw~~ll~PAI~lA~~Gf~Vs~~la~~~~~~~~~l~~-~~~-------~~~f~~~G~~~~~G~~~~~p~LA~TL~~IA 207 (376)
T 2v36_A 136 GTRSMKQLITPSIKLAEKGFPIDSVLAEAISDYQEKLSR-TAA-------KDVFLPNGEPLKEGDTLIQKDLAKTFKLIR 207 (376)
T ss_dssp CSSCHHHHHHHHHHHHHHCEECCHHHHHHHHHTHHHHTT-STT-------HHHHSTTSSCCCTTCEECCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhcC-hhH-------HHHhccCCccCCCCCEEECHHHHHHHHHHH
Confidence 689999999999999999988776543332211222221 222 23454543334445432 679999999887
Q ss_pred HH---------HHHhhhHHhhhhccccCHHHHHh
Q psy6854 116 EE---------VKNKISKTLVERNQCLTEAVVQE 140 (148)
Q Consensus 116 ~e---------Ak~~isK~qv~~~~~lT~~~l~E 140 (148)
++ .-+.|.+..-..+-.||.+.|..
T Consensus 208 ~~G~~~FY~G~iA~~iv~~~~~~GG~lt~~DLa~ 241 (376)
T 2v36_A 208 SKGTDAFYKGKFAKTLSDTVQDFGGSMTEKDLEN 241 (376)
T ss_dssp HHCTHHHHSHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HhCcccccCCHHHHHHHHHHHHcCCCCCHHHHhh
Confidence 65 12233444445677888888764
No 78
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=21.60 E-value=1.4e+02 Score=22.84 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=26.7
Q ss_pred eEEEeeccCCceeeeeecCcccHHHHHHHHHHH
Q psy6854 2 VILHVKHGDASQFLYETSTSTSIQQLLEEILNI 34 (148)
Q Consensus 2 VllHVK~gde~qFLyEtt~~~~ve~li~~lv~I 34 (148)
..|+||.-+...|-++..-+..|.+|...|.+.
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~ 138 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK 138 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHH
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhc
Confidence 367899777778999999999999998876543
No 79
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=21.51 E-value=1.8e+02 Score=19.61 Aligned_cols=32 Identities=19% Similarity=0.242 Sum_probs=24.5
Q ss_pred eEEEeecc---CCceeeeeecC-cccHHHHHHHHHH
Q psy6854 2 VILHVKHG---DASQFLYETST-STSIQQLLEEILN 33 (148)
Q Consensus 2 VllHVK~g---de~qFLyEtt~-~~~ve~li~~lv~ 33 (148)
+.|+||.- ....|-++..- +..|.+|...|..
T Consensus 28 i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~ 63 (111)
T 1we6_A 28 ATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAG 63 (111)
T ss_dssp EEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHH
T ss_pred EEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHH
Confidence 67888854 45678889995 9999999886644
No 80
>3ogn_A Odorant-binding protein; helix bundle, transport protein; HET: 3OG; 1.30A {Culex quinquefasciatus} PDB: 2l2c_A 2erb_A* 3n7h_A* 4fqt_A* 3k1e_A*
Probab=20.55 E-value=2.1e+02 Score=19.42 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=29.5
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHhhhHHhhhhccccCHHHHHhhhcC
Q psy6854 96 GRRNGYQPPIKMQDLIKTTIEEVKNKISKTLVERNQCLTEAVVQEGKGF 144 (148)
Q Consensus 96 grR~G~ap~~~~~~vL~~t~~eAk~~isK~qv~~~~~lT~~~l~E~Ld~ 144 (148)
.||-+..|++++.+.++...++...- .-+|.+.+++..+.
T Consensus 3 ~~~~~~~~~~e~~~~~~~~~~~C~~e---------~gvs~e~~~~~~~~ 42 (124)
T 3ogn_A 3 PRRDAEYPPPELLEALKPLHDICAKK---------TGVTDEAIIEFSDG 42 (124)
T ss_dssp CCCSSSSSCHHHHHHHHHHHHHHHHH---------HCCCHHHHHHHHHS
T ss_pred CcccCCCCCHHHHHHHHHHHHHhhhh---------hCcCHHHHHHHHcC
Confidence 57999999999999998887776654 23666666665543
Done!