RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6854
(148 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.5 bits (76), Expect = 0.020
Identities = 21/125 (16%), Positives = 50/125 (40%), Gaps = 22/125 (17%)
Query: 11 ASQFLYETSTSTSIQQLLEEILNI--YNG-R-LKVYRVMA----EMEELAKHGTFLPPDM 62
+ + ET + S + + + + + G R + Y + +E+ ++ +P M
Sbjct: 279 TAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM 338
Query: 63 LGLTDEQVEELKLRDDQGERCKPSGYIENKDPIGRRNGYQ------PPIKMQDL--IKTT 114
L +++ E+++ ++ P+ + I NG + PP Q L + T
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPA---GKQVEISLVNGAKNLVVSGPP---QSLYGLNLT 392
Query: 115 IEEVK 119
+ + K
Sbjct: 393 LRKAK 397
Score = 27.7 bits (61), Expect = 1.7
Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 9 GDASQFLYETSTSTSIQQLLEEILNIYNGRLKVYRVMAEMEELAKHGTFLPP-DMLGLT 66
G+ + + E ++ ++ E I +G+LK ++ E+ E + TF +L T
Sbjct: 1678 GEKGKRIRENYSA-----MIFE--TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT 1729
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter
vibrioides} PDB: 2xj9_A* 2xit_A
Length = 286
Score = 28.2 bits (63), Expect = 0.86
Identities = 7/42 (16%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 107 MQDLIKTTIEEV--KNKISKTLVERNQCLTEAVVQEGKGFGF 146
+ ++ V +N+++ T + L + + K GF
Sbjct: 171 ALSGQRQAMDWVVLRNRLATTEARNRKRLEDRLNALAKRVGF 212
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal
binding protein complex; HET: PLP EPE; 2.53A
{Archaeoglobus fulgidus} PDB: 4eb7_A*
Length = 382
Score = 27.8 bits (63), Expect = 1.3
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 7/40 (17%)
Query: 44 VMAEMEELAKHG---TFLPPDMLGLTDEQVEELK--LRDD 78
V+ + L K G ++P G D V + LRDD
Sbjct: 101 VINPAKFLQKQGFEVEYIPVGKYGEVD--VSFIDQKLRDD 138
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster
synthesis, C-S BE transferase; HET: PLP; 2.00A
{Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Length = 384
Score = 27.8 bits (63), Expect = 1.3
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 7/40 (17%)
Query: 44 VMAEMEELAKHG---TFLPPDMLGLTDEQVEELK--LRDD 78
V+ M+ L+ G ++P D G+ +EEL+ + +D
Sbjct: 102 VLETMKYLSMKGFKVKYVPVDSRGVVK--LEELEKLVDED 139
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston
bacterial structural genomics initiative, BSGI,
transferase; HET: PLP; 2.05A {Escherichia coli} PDB:
3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Length = 423
Score = 27.9 bits (63), Expect = 1.4
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 44 VMAEMEELAKHG---TFLPPDMLGLTD-EQVEELKLRDD 78
V+ +L + G T+L P G+ D +++E +RDD
Sbjct: 126 VLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAA-MRDD 163
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate
dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A
{Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Length = 501
Score = 27.2 bits (61), Expect = 2.2
Identities = 10/32 (31%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 31 ILNIYNGRLKVYRVMAE--MEELAKHGTFLPP 60
+L+++ G+L YR +AE +E+L + + P
Sbjct: 347 LLSVFGGKLTTYRKLAEHALEKLTPYYQGIGP 378
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 2.4
Identities = 9/35 (25%), Positives = 12/35 (34%), Gaps = 17/35 (48%)
Query: 25 QQL--LEEILNIYNGRLKVYR--------VMAEME 49
Q L L+ LK+Y + A ME
Sbjct: 20 QALKKLQ-------ASLKLYADDSAPALAIKATME 47
Score = 25.3 bits (54), Expect = 7.1
Identities = 7/20 (35%), Positives = 8/20 (40%), Gaps = 8/20 (40%)
Query: 101 YQP---PIKMQDL-IKTTIE 116
Y P L IK T+E
Sbjct: 32 YADDSAPA----LAIKATME 47
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.7 bits (58), Expect = 3.4
Identities = 19/130 (14%), Positives = 42/130 (32%), Gaps = 32/130 (24%)
Query: 30 EILNIYNGRLKV------YRVMAEMEELAKHGTFLPPDMLGLTDEQVEEL-------KLR 76
+ N +N K+ +V + L + LT ++V+ L + +
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 77 DDQGERCK--P---SGYIEN-KDPIGRRNGYQPPIKMQDLIKTTIEEVKNKISKTLVERN 130
D E P S E+ +D + + ++ +++ I +L
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWK---------HVNCDKLTTIIESSL---- 363
Query: 131 QCLTEAVVQE 140
L A ++
Sbjct: 364 NVLEPAEYRK 373
>1gkp_A Hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET:
KCX EPE; 1.29A {Thermus SP} SCOP: b.92.1.3 c.1.9.6 PDB:
1gkq_A*
Length = 458
Score = 26.4 bits (59), Expect = 4.7
Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 17/66 (25%)
Query: 44 VMAEMEELAKHG-----TFL-PPDMLGLTDEQVEELKLRDDQGERCKPSGYI-----ENK 92
++ E+ G FL + G+ D ++ + K G I EN
Sbjct: 133 TEGQLREIVADGISSFKIFLSYKNFFGVDDGEMYQTL------RLAKELGVIVTAHCENA 186
Query: 93 DPIGRR 98
+ +GR
Sbjct: 187 ELVGRL 192
>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric
complex, lyase, oxidoreductase/transferase complex,
lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP:
a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A*
1wdm_A* 2d3t_A*
Length = 715
Score = 25.7 bits (57), Expect = 6.9
Identities = 5/22 (22%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 43 RVMAEMEELAKHGT-FLPPDML 63
+A ++ A+ G + P L
Sbjct: 682 EFVALADQYAELGALYHPTAKL 703
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.70A {Bacillus halodurans}
Length = 561
Score = 25.7 bits (57), Expect = 7.8
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 31 ILNIYNGRLKVYRVMAE--MEELAKHGTFLPP 60
+++I G+L YR MAE ++ +A+ P
Sbjct: 366 LISIAGGKLTGYRKMAERTVDAVAQGLNVNEP 397
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein,
lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A
{Dictyostelium discoideum} PDB: 2uuv_A*
Length = 584
Score = 25.5 bits (56), Expect = 8.9
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 49 EELAKHGTFLPPD 61
++L K G L D
Sbjct: 220 KQLHKQGVSLGHD 232
>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex,
amino-acid BIOS lysine biosynthesis, transferase; HET:
AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A*
3a9i_A*
Length = 382
Score = 25.2 bits (56), Expect = 9.2
Identities = 4/23 (17%), Positives = 10/23 (43%)
Query: 100 GYQPPIKMQDLIKTTIEEVKNKI 122
G P ++ L++ V ++
Sbjct: 168 GVATPRQVYALVREVRRVVGPRV 190
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.136 0.383
Gapped
Lambda K H
0.267 0.0773 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,310,756
Number of extensions: 134642
Number of successful extensions: 446
Number of sequences better than 10.0: 1
Number of HSP's gapped: 445
Number of HSP's successfully gapped: 44
Length of query: 148
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 63
Effective length of database: 4,328,508
Effective search space: 272696004
Effective search space used: 272696004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.1 bits)