RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6854
(148 letters)
>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
{Paracoccus denitrificans [TaxId: 266]}
Length = 394
Score = 28.4 bits (62), Expect = 0.32
Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 14/77 (18%)
Query: 25 QQLLEEILNIYNGRLKVYRVMAEM--EELAKHGT-----FLPPD-----MLGLTDEQVEE 72
+L + + + E EL F+ LG T EQV+
Sbjct: 298 PELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGATPEQVK- 356
Query: 73 LKLRDDQGERCKPSGYI 89
+++++ G I
Sbjct: 357 -RIKEEFGIYMVGDSRI 372
>d1f5ma_ d.110.2.1 (A:) Hypothetical protein ykl069wp {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 176
Score = 27.8 bits (61), Expect = 0.42
Identities = 13/80 (16%), Positives = 27/80 (33%), Gaps = 6/80 (7%)
Query: 8 HGDASQFLYETSTSTSIQQLLEEILNIYNGRLKVYRVMAEMEELAKH---GTFLPPDMLG 64
H D + + ++QLL + +G++ ++ L H + + G
Sbjct: 6 HADHVNYSSNLNKEEILEQLLLSYEGLSDGQVNWVCNLSNASSLIWHAYKSLAVDINWAG 65
Query: 65 ---LTDEQVEELKLRDDQGE 81
+ L L QG+
Sbjct: 66 FYVTQASEENTLILGPFQGK 85
>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT
{Escherichia coli [TaxId: 562]}
Length = 396
Score = 27.3 bits (59), Expect = 0.78
Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 14/76 (18%)
Query: 26 QLLEEILNIYNGRLKVYRVMAE--MEELAKHGT-----FLPPD-----MLGLTDEQVEEL 73
L + + M + + L + G F+ GLT EQV
Sbjct: 302 ALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQVL-- 359
Query: 74 KLRDDQGERCKPSGYI 89
+LR++ G SG +
Sbjct: 360 RLREEFGVYAVASGRV 375
>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus
scrofa), cytosolic form [TaxId: 9823]}
Length = 412
Score = 26.8 bits (58), Expect = 1.1
Identities = 15/77 (19%), Positives = 20/77 (25%), Gaps = 14/77 (18%)
Query: 25 QQLLEEILNIYNGRLKVYRVMAE--MEELAKHGT-----FLPPD-----MLGLTDEQVEE 72
+L E M L T + GL +QVE
Sbjct: 313 PELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLNPKQVE- 371
Query: 73 LKLRDDQGERCKPSGYI 89
L + + PSG I
Sbjct: 372 -YLINQKHIYLLPSGRI 387
>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 321
Score = 26.9 bits (58), Expect = 1.2
Identities = 6/25 (24%), Positives = 15/25 (60%)
Query: 100 GYQPPIKMQDLIKTTIEEVKNKISK 124
G++P + +LI+ +E ++S+
Sbjct: 296 GWKPRTSLDELIRMMVEADLRRVSR 320
>d1iysa_ e.3.1.1 (A:) beta-Lactamase, class A {Escherichia coli,
TOHO-1 [TaxId: 562]}
Length = 261
Score = 25.6 bits (55), Expect = 2.8
Identities = 18/115 (15%), Positives = 33/115 (28%), Gaps = 10/115 (8%)
Query: 23 SIQQLLEEILNIYNGRLKVYRVMAE-MEELAKHG-TFLPPD------MLGLTDEQVEELK 74
S+QQ LE + GRL V + ++ +Q E K
Sbjct: 2 SVQQQLEALEKSSGGRLGVALINTADNSQILYRADERFAMCSTSKVMAAAAVLKQSESDK 61
Query: 75 LRDDQGERCKPSGYIENKDPIGRRNGYQPPIKMQDLIKTTIEEVKNKISKTLVER 129
+Q K S + + + + +L ++ N L+
Sbjct: 62 HLLNQRVEIKKSDLVNYNPIAEKHVNGT--MTLAELGAAALQYSDNTAMNKLIAH 114
>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli
[TaxId: 562]}
Length = 357
Score = 25.2 bits (54), Expect = 3.8
Identities = 15/124 (12%), Positives = 39/124 (31%), Gaps = 3/124 (2%)
Query: 1 MVILHVKHGDASQFLYETSTSTSIQQLLEEILNIYNGRLKVYRVMAEMEELAKHGTFLPP 60
M + ++ F+ T S++Q +E +L+ E + + T
Sbjct: 235 MQWMMLQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDA 294
Query: 61 DMLGLTDEQVEELKLRDDQGERCKPSGYIENKDPIGRRNGYQPPIKMQDLIKTTIEEVKN 120
+ D + E + + + G++P I +++++ +
Sbjct: 295 PGVKPGDVIIAVDPRYFRPAE---VETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLE 351
Query: 121 KISK 124
K
Sbjct: 352 AAKK 355
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 25.0 bits (53), Expect = 4.3
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 19 STSTSIQQLLEEILNIYNGRLKV 41
ST+ SI+Q++E+ L +L +
Sbjct: 202 STTLSIEQVIEKALQYARQKLAL 224
>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 363
Score = 24.9 bits (53), Expect = 4.9
Identities = 6/25 (24%), Positives = 16/25 (64%)
Query: 100 GYQPPIKMQDLIKTTIEEVKNKISK 124
G+ P +++++ ++ T +K +I K
Sbjct: 306 GWAPNMRLKEGLRITYFWIKEQIEK 330
>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia
pseudotuberculosis [TaxId: 633]}
Length = 356
Score = 24.8 bits (52), Expect = 6.0
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 100 GYQPPIKMQDLIKTTIEEVKNKISK 124
G+ P + ++ + KN +S
Sbjct: 314 GWHPRWNLNTTLEYIVGWHKNWLSG 338
>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 339
Score = 24.6 bits (52), Expect = 6.6
Identities = 5/25 (20%), Positives = 13/25 (52%)
Query: 100 GYQPPIKMQDLIKTTIEEVKNKISK 124
G++P + + L+K ++E +
Sbjct: 306 GWKPQVGFEKLVKMMVDEDLELAKR 330
>d1vj7a1 a.211.1.1 (A:5-196) Stringent response-like protein RelA
N-terminal domain {Streptococcus equisimilis [TaxId:
119602]}
Length = 192
Score = 24.0 bits (51), Expect = 8.5
Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 25 QQLLEEILNIYNG---RLKVYRVMAEMEELA 52
+++ E + IY RL + R+ E+E+LA
Sbjct: 157 ERISRETMEIYAPLAHRLGISRIKWELEDLA 187
>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 312
Score = 23.9 bits (51), Expect = 9.1
Identities = 3/23 (13%), Positives = 13/23 (56%)
Query: 100 GYQPPIKMQDLIKTTIEEVKNKI 122
G++P + +++ + I + ++
Sbjct: 286 GWEPVVPLEEGLNKAIHYFRKEL 308
>d1l1la_ c.7.1.4 (A:) B12-dependent (class II) ribonucleotide
reductase {Lactobacillus leichmannii [TaxId: 28039]}
Length = 721
Score = 24.1 bits (51), Expect = 9.9
Identities = 22/118 (18%), Positives = 32/118 (27%), Gaps = 12/118 (10%)
Query: 41 VYRVMAEMEELAKHGTFLPPDMLGLTDEQVEEL-KLRDDQGE-RCKPSG--------YIE 90
V RV+ L P L L EE +L PSG +
Sbjct: 49 VKRVVEGNINLDPRLQDSP--SLELKQSLTEEAERLYKLIYGLGATPSGRNLWISGTDYQ 106
Query: 91 NKDPIGRRNGYQPPIKMQDLIKTTIEEVKNKISKTLVERNQCLTEAVVQEGKGFGFDP 148
+ N + I+ Q + I + V + +G G GF
Sbjct: 107 RRTGDSLNNCWFVAIRPQKYGDSKIVPSYLGKQEKAVSMPFSFLFDELMKGGGVGFSV 164
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.136 0.383
Gapped
Lambda K H
0.267 0.0623 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 562,562
Number of extensions: 25938
Number of successful extensions: 114
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 23
Length of query: 148
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 71
Effective length of database: 1,350,386
Effective search space: 95877406
Effective search space used: 95877406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (22.9 bits)