BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6856
(370 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1K8Q|A Chain A, Crystal Structure Of Dog Gastric Lipase In Complex With A
Phosphonate Inhibitor
pdb|1K8Q|B Chain B, Crystal Structure Of Dog Gastric Lipase In Complex With A
Phosphonate Inhibitor
Length = 377
Score = 128 bits (322), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 95/320 (29%), Positives = 156/320 (48%), Gaps = 45/320 (14%)
Query: 77 TELLRKWGLSSETHRTKTQDGYTLTMHRIVPKYANS------PPVLLQHGLCLASDSWI- 129
++++ WG +E + T+DGY L + RI NS P LQHGL ++ +WI
Sbjct: 17 SQMITYWGYPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASATNWIS 76
Query: 130 -----------LRGQEDL------GNLY---KLY--PKNV-----NWHEHGLYDVPAMID 162
D+ GN + LY P +V ++ E YD+PA ID
Sbjct: 77 NLPNNSLAFILADAGYDVWLGNSRGNTWARRNLYYSPDSVEFWAFSFDEMAKYDLPATID 136
Query: 163 YILSVTRRPTLSYIGHSMGTTMFYVMASMRPEYNRKINLQISLAPVAYVSRMKSYPLVFK 222
+IL T + L Y+GHS GTT+ ++ S P+ ++I +LAPVA V ++ +
Sbjct: 137 FILKKTGQDKLHYVGHSQGTTIGFIAFSTNPKLAKRIKTFYALAPVATVKYTET---LIN 193
Query: 223 HFADNIKYITKVLRKNR---KYEILERRLANPIAIICKDPTLRPICYQAAFLIIGPDLYQ 279
++ K++ N+ + ++ LA +C T+ +C A F+I G D
Sbjct: 194 KLMLVPSFLFKLIFGNKIFYPHHFFDQFLATE---VCSRETVDLLCSNALFIICGFDTMN 250
Query: 280 MPDENIITAILTHFPAGTSFKNVIHYLQNIKALDFQGYDYGH-FENMRRYGNFFSPRYNL 338
+ + + + L+H PAGTS +NV+H+ Q +K+ FQ +D+G +NM Y P YNL
Sbjct: 251 L-NMSRLDVYLSHNPAGTSVQNVLHWSQAVKSGKFQAFDWGSPVQNMMHYHQSMPPYYNL 309
Query: 339 SAITAPVALFYSNNDYLSHP 358
+ + P+A++ ND L+ P
Sbjct: 310 TDMHVPIAVWNGGNDLLADP 329
>pdb|1HLG|A Chain A, Crystal Structure Of Human Gastric Lipase
pdb|1HLG|B Chain B, Crystal Structure Of Human Gastric Lipase
Length = 371
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 99/326 (30%), Positives = 152/326 (46%), Gaps = 57/326 (17%)
Query: 77 TELLRKWGLSSETHRTKTQDGYTLTMHRIVPKYANS------PPVLLQHGLCLASDSWI- 129
++++ WG +E + T+DGY L ++RI NS P V LQHGL ++ +WI
Sbjct: 9 SQMITYWGYPNEEYEVVTEDGYILEVNRIPYGKKNSGNTGQRPVVFLQHGLLASATNWIS 68
Query: 130 -----------LRGQEDL------GNLY---KLY--PKNV-----NWHEHGLYDVPAMID 162
D+ GN + LY P +V ++ E YD+PA ID
Sbjct: 69 NLPNNSLAFILADAGYDVWLGNSRGNTWARRNLYYSPDSVEFWAFSFDEMAKYDLPATID 128
Query: 163 YILSVTRRPTLSYIGHSMGTTMFYVMASMRPEYNRKINLQISLAPVAYVSRMKSY----- 217
+I+ T + L Y+GHS GTT+ ++ S P ++I +LAPVA V KS
Sbjct: 129 FIVKKTGQKQLHYVGHSQGTTIGFIAFSTNPSLAKRIKTFYALAPVATVKYTKSLINKLR 188
Query: 218 ---PLVFKH-FADNIKYITKVLRKNRKYEILERRLANPIAIICKDPTLRPICYQAAFLII 273
+FK F D I Y + ++ LA +C L +C A F+I
Sbjct: 189 FVPQSLFKFIFGDKIFY---------PHNFFDQFLATE---VCSREMLNLLCSNALFIIC 236
Query: 274 GPDLYQMPDENIITAILTHFPAGTSFKNVIHYLQNIKALDFQGYDYGH-FENMRRYGNFF 332
G D + + + L+H PAGTS +N+ H+ Q +K+ FQ YD+G +N Y
Sbjct: 237 GFDSKNF-NTSRLDVYLSHNPAGTSVQNMFHWTQAVKSGKFQAYDWGSPVQNRMHYDQSQ 295
Query: 333 SPRYNLSAITAPVALFYSNNDYLSHP 358
P YN++A+ P+A++ D L+ P
Sbjct: 296 PPYYNVTAMNVPIAVWNGGKDLLADP 321
>pdb|3BF8|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF8|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 35.0 bits (79), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 13/112 (11%)
Query: 111 NSPPVLLQHGLCLASDSWILRGQEDLGNLYKLYPKNVNWHEHGL------YDVPAMIDYI 164
N+ P++L HGL + D+ + + DL N + + +V HGL + PAM +
Sbjct: 15 NNSPIVLVHGLFGSLDNLGVLAR-DLVNDHNIIQVDVR--NHGLSPREPVMNYPAMAQDL 71
Query: 165 ---LSVTRRPTLSYIGHSMGTTMFYVMASMRPEYNRKINLQISLAPVAYVSR 213
L + ++IGHSMG + ++ P+ K+ + I +APV Y R
Sbjct: 72 VDTLDAQQIDKATFIGHSMGGKAVMALTALAPDRIDKL-VAIDIAPVDYHVR 122
>pdb|3BF7|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF7|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 13/112 (11%)
Query: 111 NSPPVLLQHGLCLASDSWILRGQEDLGNLYKLYPKNVNWHEHGL------YDVPAMIDYI 164
N+ P++L HGL + D+ + + DL N + + +V HGL + PAM +
Sbjct: 15 NNSPIVLVHGLFGSLDNLGVLAR-DLVNDHNIIQVDVR--NHGLSPREPVMNYPAMAQDL 71
Query: 165 ---LSVTRRPTLSYIGHSMGTTMFYVMASMRPEYNRKINLQISLAPVAYVSR 213
L + ++IGHSMG + ++ P+ K+ + I +APV Y R
Sbjct: 72 VDTLDALQIDKATFIGHSMGGKAVMALTALAPDRIDKL-VAIDIAPVDYHVR 122
>pdb|2RIO|A Chain A, Structure Of The Dual Enzyme Ire1 Reveals The Basis For
Catalysis And Regulation Of Non-conventional Splicing
pdb|2RIO|B Chain B, Structure Of The Dual Enzyme Ire1 Reveals The Basis For
Catalysis And Regulation Of Non-conventional Splicing
Length = 434
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 76/177 (42%), Gaps = 26/177 (14%)
Query: 165 LSVTRRPTLSYIGHSMGTTMFYVMASMR----PEYNRKINLQISLAPVAYVSRMKSYPLV 220
L RR T S SMG +Y+++ + +Y+R+ N+ + + + MK
Sbjct: 210 LQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSRESNI---IRGIFSLDEMKCL--- 263
Query: 221 FKHFADNIKYITKVLRKNRKYEILERRLANPIAI-ICKDPTLRPICYQAAFLIIGPDLYQ 279
H I T ++ + ++ L+R P A+ + + P P + FL+ D +
Sbjct: 264 --HDRSLIAEATDLISQMIDHDPLKR----PTAMKVLRHPLFWPKSKKLEFLLKVSDRLE 317
Query: 280 MPDENIITAILTHFPAGTSFKNVIHYLQNIKALDFQ-GYDYGHFENMRRYGNFFSPR 335
+ + + +A+L F AG+ F I + D+ +D +N+ RY + S +
Sbjct: 318 IENRDPPSALLMKFDAGSDFV--------IPSGDWTVKFDKTFMDNLERYRKYHSSK 366
>pdb|3LJ0|A Chain A, Ire1 Complexed With Adp And Quercetin
pdb|3LJ0|B Chain B, Ire1 Complexed With Adp And Quercetin
pdb|3LJ1|A Chain A, Ire1 Complexed With Cdk12 INHIBITOR III
pdb|3LJ1|B Chain B, Ire1 Complexed With Cdk12 INHIBITOR III
pdb|3LJ2|A Chain A, Ire1 Complexed With Jak Inhibitor I
pdb|3LJ2|B Chain B, Ire1 Complexed With Jak Inhibitor I
Length = 434
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 76/177 (42%), Gaps = 26/177 (14%)
Query: 165 LSVTRRPTLSYIGHSMGTTMFYVMASMR----PEYNRKINLQISLAPVAYVSRMKSYPLV 220
L RR T S SMG +Y+++ + +Y+R+ N+ + + + MK
Sbjct: 210 LQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSRESNI---IRGIFSLDEMKCL--- 263
Query: 221 FKHFADNIKYITKVLRKNRKYEILERRLANPIAI-ICKDPTLRPICYQAAFLIIGPDLYQ 279
H I T ++ + ++ L+R P A+ + + P P + FL+ D +
Sbjct: 264 --HDRSLIAEATDLISQMIDHDPLKR----PTAMKVLRHPLFWPKSKKLEFLLKVSDRLE 317
Query: 280 MPDENIITAILTHFPAGTSFKNVIHYLQNIKALDFQ-GYDYGHFENMRRYGNFFSPR 335
+ + + +A+L F AG+ F I + D+ +D +N+ RY + S +
Sbjct: 318 IENRDPPSALLMKFDAGSDFV--------IPSGDWTVKFDKTFMDNLERYRKYHSSK 366
>pdb|3SDJ|A Chain A, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
pdb|3SDJ|B Chain B, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
pdb|3SDJ|C Chain C, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
pdb|3SDJ|D Chain D, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
pdb|3SDJ|E Chain E, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
pdb|3SDJ|F Chain F, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
pdb|3SDJ|G Chain G, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
pdb|3SDJ|H Chain H, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
pdb|3SDJ|I Chain I, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
pdb|3SDJ|J Chain J, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
pdb|3SDJ|K Chain K, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
pdb|3SDJ|L Chain L, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
pdb|3SDJ|M Chain M, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
pdb|3SDJ|N Chain N, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
Length = 448
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 76/176 (43%), Gaps = 26/176 (14%)
Query: 166 SVTRRPTLSYIGHSMGTTMFYVMASMR----PEYNRKINLQISLAPVAYVSRMKSYPLVF 221
S RR T S SMG +Y+++ + +Y+R+ N+ + + + MK
Sbjct: 225 STKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSRESNI---IRGIFSLDEMKCL---- 277
Query: 222 KHFADNIKYITKVLRKNRKYEILERRLANPIAI-ICKDPTLRPICYQAAFLIIGPDLYQM 280
H I T ++ + ++ L+R P A+ + + P P + FL+ D ++
Sbjct: 278 -HDRSLIAEATDLISQMIDHDPLKR----PTAMKVLRHPLFWPKSKKLEFLLKVSDRLEI 332
Query: 281 PDENIITAILTHFPAGTSFKNVIHYLQNIKALDFQ-GYDYGHFENMRRYGNFFSPR 335
+ + +A+L F AG+ F I + D+ +D +N+ RY + S +
Sbjct: 333 ENRDPPSALLMKFDAGSDFV--------IPSGDWTVKFDKTFMDNLERYRKYHSSK 380
>pdb|3FBV|A Chain A, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3FBV|B Chain B, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3FBV|C Chain C, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3FBV|D Chain D, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3FBV|E Chain E, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3FBV|F Chain F, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3FBV|G Chain G, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3FBV|H Chain H, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3FBV|I Chain I, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3FBV|J Chain J, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3FBV|K Chain K, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3FBV|L Chain L, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3FBV|M Chain M, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3FBV|N Chain N, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3SDM|A Chain A, Structure Of Oligomeric KinaseRNASE IRE1 IN COMPLEX WITH
AN Oligonucleotide
pdb|3SDM|B Chain B, Structure Of Oligomeric KinaseRNASE IRE1 IN COMPLEX WITH
AN Oligonucleotide
pdb|3SDM|C Chain C, Structure Of Oligomeric KinaseRNASE IRE1 IN COMPLEX WITH
AN Oligonucleotide
pdb|3SDM|D Chain D, Structure Of Oligomeric KinaseRNASE IRE1 IN COMPLEX WITH
AN Oligonucleotide
pdb|3SDM|E Chain E, Structure Of Oligomeric KinaseRNASE IRE1 IN COMPLEX WITH
AN Oligonucleotide
pdb|3SDM|F Chain F, Structure Of Oligomeric KinaseRNASE IRE1 IN COMPLEX WITH
AN Oligonucleotide
pdb|3SDM|G Chain G, Structure Of Oligomeric KinaseRNASE IRE1 IN COMPLEX WITH
AN Oligonucleotide
Length = 448
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 76/176 (43%), Gaps = 26/176 (14%)
Query: 166 SVTRRPTLSYIGHSMGTTMFYVMASMR----PEYNRKINLQISLAPVAYVSRMKSYPLVF 221
S RR T S SMG +Y+++ + +Y+R+ N+ + + + MK
Sbjct: 225 STKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSRESNI---IRGIFSLDEMKCL---- 277
Query: 222 KHFADNIKYITKVLRKNRKYEILERRLANPIAI-ICKDPTLRPICYQAAFLIIGPDLYQM 280
H I T ++ + ++ L+R P A+ + + P P + FL+ D ++
Sbjct: 278 -HDRSLIAEATDLISQMIDHDPLKR----PTAMKVLRHPLFWPKSKKLEFLLKVSDRLEI 332
Query: 281 PDENIITAILTHFPAGTSFKNVIHYLQNIKALDFQ-GYDYGHFENMRRYGNFFSPR 335
+ + +A+L F AG+ F I + D+ +D +N+ RY + S +
Sbjct: 333 ENRDPPSALLMKFDAGSDFV--------IPSGDWTVKFDKTFMDNLERYRKYHSSK 380
>pdb|2WP0|C Chain C, Crystal Structure Of A Hoba-Dnaa (Domain I-Ii) Complex
From Helicobacter Pylori.
pdb|2WP0|D Chain D, Crystal Structure Of A Hoba-Dnaa (Domain I-Ii) Complex
From Helicobacter Pylori
Length = 112
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 327 RYGNFFSP-RYNLSAITAPVALFYSNNDYLSHPACNQHGALNRE 369
Y N+FS +YN +A + +A FY+ N L ++GAL +E
Sbjct: 25 EYENYFSQLKYNPNASKSDIAFFYAPNQVLCTTITAKYGALLKE 68
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 159 AMIDYILSVTRRPTLSYIGHSMGTTMFYVMASMRPEYNRKINL 201
A ID ++ L +GHSMG + +AS+RP+ +++ L
Sbjct: 83 AQIDRVIQELPDQPLLLVGHSMGAMLATAIASVRPKKIKELIL 125
>pdb|3PF8|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
pdb|3PF8|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
Length = 270
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 156 DVPAMIDYILSVTRRPTLSYIGHSMGTTMFYVMASMRPEYNRKINLQISLAPVA 209
D A+++Y+ + + +GHS G + ++A + P+ +K+ L LAP A
Sbjct: 104 DANAILNYVKTDPHVRNIYLVGHSQGGVVASMLAGLYPDLIKKVVL---LAPAA 154
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,579,033
Number of Sequences: 62578
Number of extensions: 429570
Number of successful extensions: 1125
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1105
Number of HSP's gapped (non-prelim): 14
length of query: 370
length of database: 14,973,337
effective HSP length: 100
effective length of query: 270
effective length of database: 8,715,537
effective search space: 2353194990
effective search space used: 2353194990
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)