RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6856
(370 letters)
>gnl|CDD|215470 PLN02872, PLN02872, triacylglycerol lipase.
Length = 395
Score = 99.6 bits (248), Expect = 3e-23
Identities = 88/324 (27%), Positives = 141/324 (43%), Gaps = 64/324 (19%)
Query: 78 ELLRKWGLSSETHRTKTQDGYTLTMHRIVPKYAN-----SPPVLLQHGLCLASDSWILRG 132
+L+ G S H +T+DGY L + R+ + PPVLLQHGL +A D+W L
Sbjct: 35 QLIHPAGYSCTEHTIQTKDGYLLALQRVSSRNPRLGSQRGPPVLLQHGLFMAGDAWFLNS 94
Query: 133 -QEDLGNL-----YKLYPKNV----------------------NWHEHGLYDVPAMIDYI 164
++ LG + + ++ NV +W E LYD+ MI Y+
Sbjct: 95 PEQSLGFILADHGFDVWVGNVRGTRWSYGHVTLSEKDKEFWDWSWQELALYDLAEMIHYV 154
Query: 165 LSVTRRPTLSYIGHSMGTTMFYVMASMRPEYNRKINLQISLAPVAYVSRMKSYPLVFKHF 224
S+T +GHS GT M A +P + L P++Y+ + + PLV +
Sbjct: 155 YSITNSKIF-IVGHSQGTIMSLA-ALTQPNVVEMVEAAALLCPISYLDHV-TAPLVLRMV 211
Query: 225 A---DNIKYITKVLRKNRKYEILERRLANPIA---IICKD----PTLRPICYQAAFLIIG 274
D + + + N + ++L +L + I + C D T C+ A+ +
Sbjct: 212 FMHLDQMVVAMGIHQLNFRSDVL-VKLLDSICEGHMDCNDLLTSITGTNCCFNASRI--- 267
Query: 275 PDLYQMPDENIITAILTHFPAGTSFKNVIHYLQNIKALDFQGYDYGHFENMRRYGNFFSP 334
D Y L + P +S KN+ H Q I+ F YDYG F+N++ YG P
Sbjct: 268 -DYY-----------LEYEPHPSSVKNLRHLFQMIRKGTFAHYDYGIFKNLKLYGQVNPP 315
Query: 335 RYNLSAI--TAPVALFYSNNDYLS 356
++LS I + P+ + Y D L+
Sbjct: 316 AFDLSLIPKSLPLWMGYGGTDGLA 339
>gnl|CDD|217881 pfam04083, Abhydro_lipase, Partial alpha/beta-hydrolase lipase
region. This family corresponds to a N-terminal part of
an alpha/beta hydrolase domain.
Length = 62
Score = 73.0 bits (180), Expect = 1e-16
Identities = 30/61 (49%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 77 TELLRKWGLSSETHRTKTQDGYTLTMHRIVPKYANS-----PPVLLQHGLCLASDSWILR 131
+EL+RK+G E H T+DGY LT+HRI P N P VLLQHGL +S W+L
Sbjct: 2 SELIRKYGYPVEEHEVTTEDGYILTLHRIPPGRNNRGRGKKPVVLLQHGLLASSADWVLN 61
Query: 132 G 132
G
Sbjct: 62 G 62
>gnl|CDD|223669 COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta
hydrolase superfamily) [General function prediction
only].
Length = 282
Score = 39.6 bits (91), Expect = 0.002
Identities = 26/163 (15%), Positives = 50/163 (30%), Gaps = 12/163 (7%)
Query: 112 SPPVLLQHGLCLASDSW-----ILRGQEDLGNLYKLYPKNVNWHEHGLYDVPAMIDYILS 166
PP++L HG +S W +L + + + Y + A D + +
Sbjct: 21 GPPLVLLHGFPGSSSVWRPVFKVLPALAARYRVIAPDLRGHGRSDPAGYSLSAYADDLAA 80
Query: 167 V-----TRRPTLSYIGHSMGTTMFYVMASMRPEYNRKINLQISLAPVAYVSRMKSYPLVF 221
+ + L +GHSMG + +A P+ R + L P + P
Sbjct: 81 LLDALGLEKVVL--VGHSMGGAVALALALRHPDRVRGLVLIGPAPPPGLLEAALRQPAGA 138
Query: 222 KHFADNIKYITKVLRKNRKYEILERRLANPIAIICKDPTLRPI 264
A + + + L +A + +
Sbjct: 139 APLAALADLLLGLDAAAFAALLAALGLLAALAAAARAGLAEAL 181
>gnl|CDD|182637 PRK10673, PRK10673, acyl-CoA esterase; Provisional.
Length = 255
Score = 37.0 bits (86), Expect = 0.010
Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 29/120 (24%)
Query: 111 NSPPVLLQHGLCLASDSWILRGQEDLGNLYKLYPKNVNWHE--------HGL------YD 156
N+ P++L HGL L NL L VN H+ HGL +
Sbjct: 15 NNSPIVLVHGLF-----------GSLDNLGVLARDLVNDHDIIQVDMRNHGLSPRDPVMN 63
Query: 157 VPAMIDYILSVTRR---PTLSYIGHSMGTTMFYVMASMRPEYNRKINLQISLAPVAYVSR 213
PAM +L ++IGHSMG + ++ P+ K+ + I +APV Y R
Sbjct: 64 YPAMAQDLLDTLDALQIEKATFIGHSMGGKAVMALTALAPDRIDKL-VAIDIAPVDYHVR 122
>gnl|CDD|201306 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This
catalytic domain is found in a very wide range of
enzymes.
Length = 226
Score = 35.2 bits (81), Expect = 0.038
Identities = 14/81 (17%), Positives = 34/81 (41%)
Query: 148 NWHEHGLYDVPAMIDYILSVTRRPTLSYIGHSMGTTMFYVMASMRPEYNRKINLQISLAP 207
++ ++ D+ ++ +L ++ +GHSMG + A+ P+ + + L ++ P
Sbjct: 19 DFADYRFDDLAEDLEALLDALGLDKVNLVGHSMGGLIALAYAAKYPDRVKALVLVGTVHP 78
Query: 208 VAYVSRMKSYPLVFKHFADNI 228
S + + DN
Sbjct: 79 AGLSSPLTPRGNLLGLLLDNF 99
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton].
Length = 443
Score = 32.0 bits (73), Expect = 0.52
Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 29/100 (29%)
Query: 129 ILRGQEDLGNLYKLYPKNVNWHEHGLYDVPA-MIDYILSVTRRPTLS-------YIGHS- 179
I+ G+E GN NW G Y V +ID ++ + RR + HS
Sbjct: 90 IIFGKEGAGN---------NW-ARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSL 139
Query: 180 -------MGTTMFYVMASMRPEYNRKINLQISLAPVAYVS 212
+G+ + + +R EY +KI L S+ P VS
Sbjct: 140 GGGTGSGLGSLL---LERLREEYPKKIKLTFSVFPAPKVS 176
>gnl|CDD|218772 pfam05840, Phage_GPA, Bacteriophage replication gene A protein
(GPA). This family consists of a group of bacteriophage
replication gene A protein (GPA) like sequences from
both viruses and bacteria. The members of this family
are likely to be endonucleases.
Length = 374
Score = 30.9 bits (70), Expect = 1.1
Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 14/107 (13%)
Query: 178 HSMGTTMFYVMASMRPEYNRKINLQISLAPVAY----VSRMKSYPLVFKHFADNIK---- 229
H GT ++++ MRPE+ R+IN + V +SR ++P+ FK A+ I
Sbjct: 247 HHDGTPHWHMLHFMRPEHRRQINSLLRTYAVREDGDELSRKGAWPVRFK--AEPIDPTKG 304
Query: 230 ----YITKVLRKNRKYEILERRLANPIAIICKDPTLRPICYQAAFLI 272
YI K + KN L+ K+ + + + I
Sbjct: 305 SAVGYIAKYISKNIDGRALDGEKDKETGKSLKESAKAVSAWASLWRI 351
>gnl|CDD|241311 cd13157, PTB_tensin-related, Tensin-related
Phosphotyrosine-binding (PTB) domain. Tensin plays
critical roles in renal function, muscle regeneration,
and cell migration. It binds to actin filaments and
interacts with the cytoplasmic tails of beta-integrin
via its PTB domain, allowing tensin to link actin
filaments to integrin receptors. Tensin functions as a
platform for assembly and disassembly of signaling
complexes at focal adhesions by recruiting
tyrosine-phosphorylated signaling molecules, and also
by providing interaction sites for other proteins. In
addition to its PTB domain, it contains a C-terminal
SH2 domain. PTB domains have a common PH-like fold and
are found in various eukaryotic signaling molecules.
This domain was initially shown to binds peptides with
a NPXY motif with differing requirements for
phosphorylation of the tyrosine, although more recent
studies have found that some types of PTB domains can
bind to peptides lack tyrosine residues altogether. In
contrast to SH2 domains, which recognize
phosphotyrosine and adjacent carboxy-terminal residues,
PTB-domain binding specificity is conferred by residues
amino-terminal to the phosphotyrosine. PTB domains are
classified into three groups: phosphotyrosine-dependent
Shc-like, phosphotyrosine-dependent IRS-like, and
phosphotyrosine-independent Dab-like PTB domains.
Length = 129
Score = 29.3 bits (66), Expect = 1.5
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 19 RVSNVQPQQQSLYPSRNIISSIIERFLSGGLSI------TAIMFKSLRKISFISV 67
R +V Q SL PS + +I G+ I T +M +LR++S+ +
Sbjct: 22 RADSVGKQLDSLKPSTSRGRPVILSISLSGIKICSEDGETVLMAHALRRVSYSTC 76
>gnl|CDD|225010 COG2099, CobK, Precorrin-6x reductase [Coenzyme metabolism].
Length = 257
Score = 30.0 bits (68), Expect = 1.6
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 207 PVAYVSRMKSYPLVFKHFADNIKYITKVLRKN 238
PV + R YP F D + ++ R
Sbjct: 224 PVIMIERPIDYPAGFGDVTDLDAALAQLRRWL 255
>gnl|CDD|203773 pfam07819, PGAP1, PGAP1-like protein. The sequences found in this
family are similar to PGAP1. This is an endoplasmic
reticulum membrane protein with a catalytic serine
containing motif that is conserved in a number of
lipases. PGAP1 functions as a GPI inositol-deacylase;
this deacylation is important for the efficient
transport of GPI-anchored proteins from the endoplasmic
reticulum to the Golgi body.
Length = 225
Score = 30.0 bits (68), Expect = 1.7
Identities = 30/125 (24%), Positives = 47/125 (37%), Gaps = 27/125 (21%)
Query: 111 NSPPVLLQHGL--------CLASDSWILRGQEDLGNLYKLYPKNVNWHEHGLYD------ 156
+ PVL G +AS + LR E N + L +V+++E
Sbjct: 3 SGIPVLFIPGNAGSYKQVRSIASVA--LRKAELNDNGFHLDFFSVDFNEELSAFHGRTLL 60
Query: 157 -----VPAMIDYILS----VTRRPT-LSYIGHSMGTTMFYVMASMRPEYNRKINLQISLA 206
+ I YILS PT + IGHSMG + ++ +N ++L+
Sbjct: 61 DQAEYLNDAIRYILSLYNSNRPPPTSVILIGHSMGGLVARAALTLPNYIPDSVNTIVTLS 120
Query: 207 -PVAY 210
P A
Sbjct: 121 SPHAG 125
>gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family. This family
contains alpha/beta hydrolase enzymes of diverse
specificity.
Length = 187
Score = 29.3 bits (66), Expect = 2.3
Identities = 33/170 (19%), Positives = 60/170 (35%), Gaps = 40/170 (23%)
Query: 115 VLLQHGLCLASDSWI----------------LRGQEDLGNLYKLYPKNVNWHEHGLYDVP 158
V+L HG +++SW L G G+ + + D+
Sbjct: 1 VVLLHGAGGSAESWRPLAEALAAGYRVLAPDLPGH---GDSDGPPRTPYSLEDDAA-DLA 56
Query: 159 AMIDYILSVTRRPTLSYIGHSMGTTMFYVMASMRPEYNRKINLQISLAPVAYVSRMKSYP 218
A++D + L +GHS+G + A+ RPE + + ++P
Sbjct: 57 ALLDAL--GLGPVVL--VGHSLGGAVALAAAARRPERVAGL---VLISPPL--------R 101
Query: 219 LVFKHFADNIKYITKVLRKNRKYEILERRLAN---PIAIIC--KDPTLRP 263
+ + A + + +LR L LA P+ +I DP + P
Sbjct: 102 DLEELLAADAAALLALLRAALLDADLREALARLTVPVLVIHGEDDPLVPP 151
>gnl|CDD|179655 PRK03822, lplA, lipoate-protein ligase A; Provisional.
Length = 338
Score = 29.7 bits (67), Expect = 2.6
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 178 HSMGTTMFYVMASMRPEYNRKINLQISLA 206
H +G T F MA +PEY++ I+ I L
Sbjct: 80 HDLGNTCFTFMAG-KPEYDKTISTSIVLN 107
>gnl|CDD|201162 pfam00334, NDK, Nucleoside diphosphate kinase.
Length = 135
Score = 27.8 bits (63), Expect = 4.3
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 34 RNIISSIIERFLSGGLSITAI 54
R +I II RF G I A+
Sbjct: 14 RGLIGEIISRFEKKGFKIVAL 34
>gnl|CDD|235663 PRK05989, cobN, cobaltochelatase subunit CobN; Reviewed.
Length = 1244
Score = 29.1 bits (66), Expect = 5.4
Identities = 21/102 (20%), Positives = 33/102 (32%), Gaps = 29/102 (28%)
Query: 223 HFADNIKYITKVLRKNRKYEILERRLANPIAIIC---KDPTLRPICYQAAFLIIGPDLYQ 279
A N I ++ LE R NP+ + KD P + F
Sbjct: 213 LQAGNTAPIDALIAA------LEARGLNPLPVFVSSLKDA-ESPEVLEDLFN-------- 257
Query: 280 MPDENIITAIL--THFPAGTSFKNVIHYLQNIKALD---FQG 316
+ ++ A+L T F + +V + ALD Q
Sbjct: 258 --ADALVDAVLNATGFALAAAAWDVEV----LAALDVPVLQV 293
>gnl|CDD|237347 PRK13318, PRK13318, pantothenate kinase; Reviewed.
Length = 258
Score = 28.2 bits (64), Expect = 6.2
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 12/46 (26%)
Query: 68 MLLTIRVSNT----------ELLRKWGLSSETHRTKTQDGYTLTMH 103
MLL I V NT +L+ W +S T +T D Y + +
Sbjct: 1 MLLAIDVGNTNTVFGLYEGGKLVAHWRIS--TDSRRTADEYGVWLK 44
>gnl|CDD|112952 pfam04162, Gyro_capsid, Gyrovirus capsid protein (VP1).
Gyroviruses are small circular single stranded viruses.
This family includes the VP1 protein from the chicken
anaemia virus which is the viral capsid protein.
Length = 449
Score = 28.6 bits (63), Expect = 6.7
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 123 LASDSW-ILRGQE--DLGNLYKLYPKNVNWHEHGLY 155
+ SD+W ++R Q LGN + YP +VNW +Y
Sbjct: 409 MKSDAWAVVRVQSVWQLGNRQRPYPWDVNWANSTMY 444
>gnl|CDD|173010 PRK14544, PRK14544, nucleoside diphosphate kinase; Provisional.
Length = 183
Score = 27.9 bits (62), Expect = 7.1
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 33 SRNIISSIIERFLSGGLSITAI-MFKSLR 60
R ++ II RF GL I A+ M K+
Sbjct: 16 KRGLVGEIISRFEKAGLKIVAMKMVKATP 44
>gnl|CDD|225140 COG2231, COG2231, Uncharacterized protein related to Endonuclease
III [DNA replication, recombination, and repair].
Length = 215
Score = 28.1 bits (63), Expect = 7.3
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 282 DENIITAILTHFPAGTSFKNVIHYLQNIKALD 313
DE II AILT TS+KNV L+N+K
Sbjct: 31 DEIIIGAILTQ---NTSWKNVEKALENLKNEG 59
>gnl|CDD|187887 cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Zn-finger domain containing protein, distant homologs of
Cas8 proteins; signature gene for I-C subtype; also
known as Csd1 family.
Length = 569
Score = 28.0 bits (63), Expect = 9.1
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 220 VFKHFADNIK-YITKVLRKNRKYEILERRLANPIAIICKD--PTLRPICYQAAFLI 272
VF ++ ++ K LRK ++ LER + + + D P + Q F +
Sbjct: 504 VFPTLLRLLQPHLAK-LRKEKRAVNLERLIGEILDGLNPDDFPRTLSLEEQGEFAL 558
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.138 0.415
Gapped
Lambda K H
0.267 0.0673 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,086,768
Number of extensions: 1850785
Number of successful extensions: 2024
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2016
Number of HSP's successfully gapped: 34
Length of query: 370
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 272
Effective length of database: 6,590,910
Effective search space: 1792727520
Effective search space used: 1792727520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.0 bits)