RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6856
(370 letters)
>1k8q_A Triacylglycerol lipase, gastric; APHA beta hydrolase fold,
hydrolase; HET: NAG BOG C11; 2.70A {Canis lupus
familiaris} SCOP: c.69.1.6 PDB: 1hlg_A*
Length = 377
Score = 231 bits (591), Expect = 3e-73
Identities = 89/317 (28%), Positives = 146/317 (46%), Gaps = 39/317 (12%)
Query: 77 TELLRKWGLSSETHRTKTQDGYTLTMHRIVPKYANS------PPVLLQHGLCLASDSWIL 130
++++ WG +E + T+DGY L + RI NS P LQHGL ++ +WI
Sbjct: 17 SQMITYWGYPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASATNWIS 76
Query: 131 RGQEDL------------------GNLY-----KLYPK-----NVNWHEHGLYDVPAMID 162
+ GN + P ++ E YD+PA ID
Sbjct: 77 NLPNNSLAFILADAGYDVWLGNSRGNTWARRNLYYSPDSVEFWAFSFDEMAKYDLPATID 136
Query: 163 YILSVTRRPTLSYIGHSMGTTMFYVMASMRPEYNRKINLQISLAPVAYVSRMKSYPLVFK 222
+IL T + L Y+GHS GTT+ ++ S P+ ++I +LAPVA V ++
Sbjct: 137 FILKKTGQDKLHYVGHSQGTTIGFIAFSTNPKLAKRIKTFYALAPVATVKYTETL---IN 193
Query: 223 HFADNIKYITKVLRKNRKYEILERRLANPIAIICKDPTLRPICYQAAFLIIGPDLYQMPD 282
++ K++ N+ + +C T+ +C A F+I G D + +
Sbjct: 194 KLMLVPSFLFKLIFGNKIFYPHHFFDQFLATEVCSRETVDLLCSNALFIICGFDTMNL-N 252
Query: 283 ENIITAILTHFPAGTSFKNVIHYLQNIKALDFQGYDYG-HFENMRRYGNFFSPRYNLSAI 341
+ + L+H PAGTS +NV+H+ Q +K+ FQ +D+G +NM Y P YNL+ +
Sbjct: 253 MSRLDVYLSHNPAGTSVQNVLHWSQAVKSGKFQAFDWGSPVQNMMHYHQSMPPYYNLTDM 312
Query: 342 TAPVALFYSNNDYLSHP 358
P+A++ ND L+ P
Sbjct: 313 HVPIAVWNGGNDLLADP 329
>2zyr_A Lipase, putative; fatty acid, hydrolase; HET: 1PE; 1.77A
{Archaeoglobus fulgidus} PDB: 2zys_A* 2zyi_A* 2zyh_A*
Length = 484
Score = 48.0 bits (113), Expect = 3e-06
Identities = 20/102 (19%), Positives = 32/102 (31%)
Query: 107 PKYANSPPVLLQHGLCLASDSWILRGQEDLGNLYKLYPKNVNWHEHGLYDVPAMIDYILS 166
+L GL I + + L + + +ID L+
Sbjct: 64 SWALVVETDMLFSGLGSEFGLNISQIIDPETLDKILSKSRERLIDETFSRLDRVIDEALA 123
Query: 167 VTRRPTLSYIGHSMGTTMFYVMASMRPEYNRKINLQISLAPV 208
+ + +GHSMGT + PE K+ I L V
Sbjct: 124 ESGADKVDLVGHSMGTFFLVRYVNSSPERAAKVAHLILLDGV 165
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.7 bits (113), Expect = 4e-06
Identities = 69/440 (15%), Positives = 134/440 (30%), Gaps = 151/440 (34%)
Query: 25 PQQQSLYPSRNIISSIIE---RFLSGGLSITAIMFKSLRKISFISVMLLTIRVSNTELLR 81
P+ + + + ++ E +FL + + + + F V+ L + L
Sbjct: 42 PEPTEGFAADDEPTTPAELVGKFLG----YVSSLVEPSKVGQFDQVLNLCLTEFENCYLE 97
Query: 82 KWGLSSETHR-----TKTQDGYTLTMHRIVPKYANSPPVLLQHGLCLASDSWILR----- 131
++ H + D + ++ Y + ++ + S+S + R
Sbjct: 98 ----GNDIHALAAKLLQENDTTLVKTKELIKNYITAR-IMAKRPFDKKSNSALFRAVGEG 152
Query: 132 ---------GQ-------EDLGNLYKLYPKNVN----------------------WHEHG 153
GQ E+L +LY+ Y V G
Sbjct: 153 NAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG 212
Query: 154 LYDVPAMIDYILSVTRRPTLSYIGH---SM---GTT---MFYVMA---SMRPEYNRKINL 201
L ++ ++++ + + P Y+ S G + V A P R
Sbjct: 213 L-NI---LEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLK 268
Query: 202 QIS------LAPVAYVSRMKSYPLVFKHFADNIKYITKVL-----RKNRKYEILERRLAN 250
+ + VA ++ S+ F +++ VL R Y +
Sbjct: 269 GATGHSQGLVTAVA-IAETDSWE----SFFVSVRKAITVLFFIGVRCYEAY----PNTSL 319
Query: 251 PIAIICKD--------PTLRPICYQAAFLIIGPDLYQMPDENIITAILTHFPAGT----S 298
P +I+ +D P+ P+ I Q+ ++ + +H PAG S
Sbjct: 320 PPSIL-EDSLENNEGVPS--PM-----LSISNLTQEQV--QDYVNKTNSHLPAGKQVEIS 369
Query: 299 FKN-----VI-----------HYLQNIKALDFQGYDYGH--FENMR-RYGNFFSPRYNLS 339
N V+ L+ KA G D F + ++ N F P
Sbjct: 370 LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPS--GLDQSRIPFSERKLKFSNRFLP----- 422
Query: 340 AITAPVALFYSNNDYLSHPA 359
+ +P F+S L PA
Sbjct: 423 -VASP---FHS--HLLV-PA 435
Score = 38.1 bits (88), Expect = 0.005
Identities = 55/333 (16%), Positives = 88/333 (26%), Gaps = 146/333 (43%)
Query: 9 SFISVMLLTIRVS---NVQPQQQSLYPSRNIISSIIERFLSGG-------LSITAIMFKS 58
SF + I V V+ + YP+ ++ SI+E L LSI+ + +
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEA--YPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQ 348
Query: 59 LRKISFISVMLLTIRVSNTELLRKWGLSSETH----RTKTQDGYTLTMHRIVPKYANSPP 114
++ + +N+ L + ++ PP
Sbjct: 349 VQDY---------VNKTNSH------LPAGKQVEISLVNGAKNLVVS----------GPP 383
Query: 115 VLLQHGLCLASDSWILRGQEDLGNLYKLYPKNVNWHEHGLYDVPAMIDYILSVTRRPTLS 174
L +GL L LR + P+ +D +R P
Sbjct: 384 QSL-YGLNLT-----LRKAK----------------------APSGLD----QSRIP--- 408
Query: 175 YIGHSMGTTMFYVMASMRPEYNRKINLQISLAPVAYVSRMKSYPLVFKHFADNIKYITKV 234
S RK+ PV + P F H
Sbjct: 409 ---FS----------------ERKLKFSNRFLPV-------ASP--F-H----------- 428
Query: 235 LRKNRKYEILERRLANPIAIICKDPTLRPICYQAAFLII-------GPDLYQMPD---EN 284
L +I KD + + A + I G DL + E
Sbjct: 429 ----SHL------LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISER 478
Query: 285 IITAILT---HFPAGTSFKNVIHYLQNIKALDF 314
I+ I+ + T FK H LDF
Sbjct: 479 IVDCIIRLPVKWETTTQFK-ATH------ILDF 504
Score = 37.3 bits (86), Expect = 0.008
Identities = 56/354 (15%), Positives = 99/354 (27%), Gaps = 141/354 (39%)
Query: 26 QQQ----SLYPSRNIISSIIER----FLSG-GLSITAIMF---KSLRKISFISVMLLTIR 73
Q+Q LY + + R F G SI I+ +L I F IR
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNL-TIHFGGEKGKRIR 1685
Query: 74 VSNTELLRKWGLSSETHRTKTQDGYTLTMHRIVPKYANSPPVLLQHGLCLASDSWILRGQ 133
+ + ++ + DG T + K N S S+ R +
Sbjct: 1686 ENYSAMIFE----------TIVDGKLKT--EKIFKEINE-----------HSTSYTFRSE 1722
Query: 134 EDLGNL---------------YKLYPKNVNWHEHGLYDVPAMIDYILSVTRRPTLSYIGH 178
+ L + ++ GL A + GH
Sbjct: 1723 KGLLSATQFTQPALTLMEKAAFED------LKSKGLIPADAT--------------FAGH 1762
Query: 179 SMGTTMFYVMASMRPEYNRKINLQISLAPVAYVSRMKSYPLVFKHFADNIKYITKVLRKN 238
S+G EY +LA +A V M + +V+
Sbjct: 1763 SLG------------EYA-------ALASLADV--MS--------IESLV----EVVFY- 1788
Query: 239 R---KYEILERR---------LA-NP--IAIICKDPTLRPICYQAAFLIIGPDL----YQ 279
R + R +A NP +A L+ + + G + Y
Sbjct: 1789 RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVG-KRTGWLVEIVNYN 1847
Query: 280 MPDENIITAILTHFPAGT-----SFKNVIHYL--QNIKALDFQGYDYGHFENMR 326
+ ++ + AG + NV++++ Q I ++ Q E +
Sbjct: 1848 VENQQYVA-------AGDLRALDTVTNVLNFIKLQKIDIIELQ--KSLSLEEVE 1892
>3icv_A Lipase B, CALB; circular permutation, cleavage on PAIR of basic
residues, glycoprotein, hydrolase, lipid degradation,
zymogen, disulf; HET: NAG BTB; 1.49A {Candida
antarctica} PDB: 3icw_A*
Length = 316
Score = 44.8 bits (105), Expect = 2e-05
Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 11/110 (10%)
Query: 107 PKYANSPPVLLQHGL-CLASDSWILRGQEDLGNL-YKLYPKNVNWHEHGLYDVP------ 158
+ S P+LL G S+ L Y ++ L D
Sbjct: 60 SPSSVSKPILLVPGTGTTGPQSFDSNWIPLSAQLGYTPCW--ISPPPFMLNDTQVNTEYM 117
Query: 159 -AMIDYILSVTRRPTLSYIGHSMGTTMFYVMASMRPEYNRKINLQISLAP 207
I + + + L + S G + + P K++ ++ AP
Sbjct: 118 VNAITTLYAGSGNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAP 167
>1tca_A Lipase; hydrolase(carboxylic esterase); HET: NAG; 1.55A {Candida
antarctica} SCOP: c.69.1.17 PDB: 1lbs_A* 1lbt_A* 1tcb_A*
1tcc_A*
Length = 317
Score = 44.0 bits (103), Expect = 4e-05
Identities = 18/108 (16%), Positives = 33/108 (30%), Gaps = 11/108 (10%)
Query: 109 YANSPPVLLQHGL-CLASDSWILRGQEDLGNL-YKLYPKNVNWHEHGLYDVP-------A 159
+ S P+LL G S+ L Y ++ L D
Sbjct: 28 SSVSKPILLVPGTGTTGPQSFDSNWIPLSTQLGYTPCW--ISPPPFMLNDTQVNTEYMVN 85
Query: 160 MIDYILSVTRRPTLSYIGHSMGTTMFYVMASMRPEYNRKINLQISLAP 207
I + + + L + S G + + P K++ ++ AP
Sbjct: 86 AITALYAGSGNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAP 133
>3kxp_A Alpha-(N-acetylaminomethylene)succinic acid hydrolase; alpha/beta
hydrolase, PLP degradation, E-2-
(acetamidomethylene)succinate; 2.26A {Mesorhizobium
loti}
Length = 314
Score = 41.6 bits (98), Expect = 2e-04
Identities = 25/137 (18%), Positives = 35/137 (25%), Gaps = 59/137 (43%)
Query: 89 THRTKTQDGYTLTMHRIVPKYANS---PPVLLQHGLCLASDSW-------------I--- 129
R TL + P +L HG+ S + I
Sbjct: 49 ISRRVDIGRITL--N-----VREKGSGPLMLFFHGITSNSAVFEPLMIRLSDRFTTIAVD 101
Query: 130 LRGQEDLGNLYKLYPKNVNWHEHGL-------YDVPAMIDYILSVTR-----RPTLSYIG 177
RG HGL Y+ D I + R L +G
Sbjct: 102 QRG-------------------HGLSDKPETGYEANDYADDIAGLIRTLARGHAIL--VG 140
Query: 178 HSMGTTMFYVMASMRPE 194
HS+G A+ P+
Sbjct: 141 HSLGARNSVTAAAKYPD 157
>2rau_A Putative esterase; NP_343859.1, putative lipase, structural
genomics, joint CEN structural genomics, JCSG; HET: PG4
UNL; 1.85A {Sulfolobus solfataricus P2}
Length = 354
Score = 41.5 bits (96), Expect = 3e-04
Identities = 12/127 (9%), Positives = 33/127 (25%), Gaps = 24/127 (18%)
Query: 90 HRTKTQDGYTLTMHRIVPKYANSPPVLLQHGLCLASDSWI-------------------- 129
H+ G + + +++ ++ +
Sbjct: 41 HKVNLIGGGNDAVLILPGTWSSGEQLVTISWNGVHYTIPDYRKSIVLYLARNGFNVYTID 100
Query: 130 LRGQ---EDLGNLYKLYPKNVNWHEHGLYDVPAMIDYILSVTRRPTLSYIGHSMGTTMFY 186
R L + + N W + D+ ++ +I + + + G S G
Sbjct: 101 YRTHYVPPFLKDRQLSFTANWGWSTW-ISDIKEVVSFIKRDSGQERIYLAGESFGGIAAL 159
Query: 187 VMASMRP 193
+S+
Sbjct: 160 NYSSLYW 166
>3p2m_A Possible hydrolase; alpha/beta hydrolase superfamily; 2.80A
{Mycobacterium tuberculosis}
Length = 330
Score = 40.5 bits (95), Expect = 5e-04
Identities = 24/152 (15%), Positives = 50/152 (32%), Gaps = 36/152 (23%)
Query: 81 RKWGLSSETHRTKTQDGYTLTMHRIVPKYANSPPVLLQHGLCLASDSW--ILRGQEDLGN 138
+ G++ + ++ R ++P V+ HG + +W ++ LG
Sbjct: 53 EQAGVNGPLPEVERVQAGAISALRWGG---SAPRVIFLHGGGQNAHTWDTVIV---GLG- 105
Query: 139 LYKLY----------PKNVNWHEHGLYDVPAMIDYILSV-----TRRPTLSYIGHSMG-- 181
W E G Y + + V + +G S+G
Sbjct: 106 -EPALAVDLPGHGHSA----WREDGNYSPQLNSETLAPVLRELAPGAEFV--VGMSLGGL 158
Query: 182 TTMFYVMASMRPEYNRKINLQISLAPVAYVSR 213
T + +A+M P+ ++ L + + P A
Sbjct: 159 TAI--RLAAMAPDLVGELVL-VDVTPSALQRH 187
>3bwx_A Alpha/beta hydrolase; YP_496220.1, joint center for structural
genomics, protein structure initiative, PSI-2; HET: MSE;
1.50A {Novosphingobium aromaticivorans}
Length = 285
Score = 38.9 bits (91), Expect = 0.002
Identities = 25/140 (17%), Positives = 40/140 (28%), Gaps = 58/140 (41%)
Query: 88 ETHRTKTQDGYTLTMH-RIVPKYANSPPVLLQHGLCLASDSW-------------I---L 130
E + DG L +H R + PPVL GL + + + +
Sbjct: 6 EDRYWTSSDG--LRLHFRAYEGDISRPPVLCLPGLTRNARDFEDLATRLAGDWRVLCPEM 63
Query: 131 RGQEDLGNLYKLYPKNVNWHEHGL---------YDVPAMIDYILSV-----TRRPTLSYI 176
RG G Y + + ++ R I
Sbjct: 64 RG-------------------RGDSDYAKDPMTYQPMQYLQDLEALLAQEGIERFVA--I 102
Query: 177 GHSMG--TTMFYVMASMRPE 194
G S+G TM ++A+ P
Sbjct: 103 GTSLGGLLTM--LLAAANPA 120
>2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase,
putative lipase; HET: CME CSO; 1.90A {Saccharomyces
cerevisiae} PDB: 2y6v_A*
Length = 398
Score = 39.0 bits (90), Expect = 0.002
Identities = 28/183 (15%), Positives = 44/183 (24%), Gaps = 35/183 (19%)
Query: 98 YTLTMHRIVPKYANSPPVLLQHGLCLASDSW--ILR------------------------ 131
YT + + A ++ HG ++ W L
Sbjct: 38 YTSAERQRRSRTATRLNLVFLHGSGMSKVVWEYYLPRLVAADAEGNYAIDKVLLIDQVNH 97
Query: 132 GQEDLGNLYKLYPKNVNWHEHGLYDVPAMIDYILSVTRRPT--LSYIGHSMGTTMFYVMA 189
G + N +L N NW + DV + L IGHSMG
Sbjct: 98 GDSAVRNRGRL-GTNFNWIDGA-RDVLKIATCELGSIDSHPALNVVIGHSMGGFQALACD 155
Query: 190 SMRPEYNRKINLQISLAPVAYVSRMKSYPLVFKHFADNIKY--ITKVLRKNRKYEILERR 247
++P + I + PV + + LR
Sbjct: 156 VLQPNLFHLL---ILIEPVVITRKAIGAGRPGLPPDSPQIPENLYNSLRLKTCDHFANES 212
Query: 248 LAN 250
Sbjct: 213 EYV 215
>1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1
interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23
Length = 210
Score = 38.0 bits (88), Expect = 0.002
Identities = 23/150 (15%), Positives = 45/150 (30%), Gaps = 30/150 (20%)
Query: 89 THRTKTQDGYTLTMHRIVPKYANS-PPVLLQHGLCLASDSWILRGQEDLGNLYKLYPKN- 146
T G L +P + VLL HG+ +S++W ++LG L++L
Sbjct: 8 REGTIQVQGQALFFREALPGSGQARFSVLLLHGIRFSSETW-----QNLGTLHRLAQAGY 62
Query: 147 ----VNWHEHGL---------YDVPAMIDYILSVT-----RRPTLSYIGHSMGTTMFYVM 188
++ G A ++ +V P + I S+
Sbjct: 63 RAVAIDLPGLGHSKEAAAPAPIGELAPGSFLAAVVDALELGPPVV--ISPSLSGMYSLPF 120
Query: 189 ASMRPEYNRKINLQISLAPVAYVSRMKSYP 218
+ + +AP+ +
Sbjct: 121 LTAPGSQLPGF---VPVAPICTDKINAANY 147
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 0.003
Identities = 44/308 (14%), Positives = 83/308 (26%), Gaps = 120/308 (38%)
Query: 27 QQSLYPSRNIISSIIERFLSG-----------GLSI----TAIMFKSL----RKISFISV 67
+ + + +++IIE L+ LS+ I L + V
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 68 MLLTIRVSNTELLRKWG--LSSETH----RTKTQDGYTLTMHR-IVPKYANSPPVLLQHG 120
M++ ++ L+ K + K + +HR IV Y
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY----------- 453
Query: 121 LCLASDSWILRGQEDLGNLYKLYPKNVNWHEHGLYDVPAMID-YILSVTRRPTLSYIGHS 179
N+ K + + +P +D Y S +IGH
Sbjct: 454 -----------------NIPKTFD---SDDL-----IPPYLDQYFYS--------HIGHH 480
Query: 180 MGTTMFYVMASMRPE-Y------NRKI-------NLQISLAPVAYVSRMKSYPLVFKHFA 225
+ ++ + +KI N S+ + ++K Y
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT--LQQLKFYK------- 531
Query: 226 DNIKYITKVLRKNRKYEILERRLANPIAIICKDPTLRPICYQAAFLI-IGPDLYQMPDEN 284
YI + KYE L + + FL I +L +
Sbjct: 532 ---PYICD---NDPKYERLVNAILD-------------------FLPKIEENLICSKYTD 566
Query: 285 IITAILTH 292
++ L
Sbjct: 567 LLRIALMA 574
Score = 35.6 bits (81), Expect = 0.027
Identities = 34/230 (14%), Positives = 67/230 (29%), Gaps = 75/230 (32%)
Query: 128 WILRGQEDLGNLYKLY-----PKNVNWHEHGLYDVPAMIDYILSVTRRPTLSYIGHSMGT 182
W L +++ + + + N + ++ I + R+P++ +
Sbjct: 69 WTLLSKQE--EMVQKFVEEVLRINYKF----------LMSPIKTEQRQPSMMTRMYIEQR 116
Query: 183 TMFYVMASMRPEYN--RK---INLQ---ISLAPVAYVSR--M----KS---------YPL 219
Y + +YN R + L+ + L P V + K+ Y +
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 220 VFKHFADNIKYITKVLRKNRKYEILERRLANPIAIICKDPTLRPICYQAAFLIIGPDLYQ 279
I ++ + N +LE L+ + YQ I P+
Sbjct: 177 Q-CKMDFKIFWLN-LKNCNSPETVLEM--------------LQKLLYQ-----IDPNWTS 215
Query: 280 MPD--ENIITAI------LTHFPAGTSFKNVIHYLQN------IKALDFQ 315
D NI I L ++N + L N A +
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265
>3bdi_A Uncharacterized protein TA0194; NP_393672.1, predicted CIB-like
hydrolase, structural genomi center for structural
genomics; HET: MSE; 1.45A {Thermoplasma acidophilum dsm
1728}
Length = 207
Score = 37.5 bits (87), Expect = 0.003
Identities = 20/127 (15%), Positives = 36/127 (28%), Gaps = 29/127 (22%)
Query: 89 THRTKTQDGYTLTMHRIVPKYANSPPVLLQHGLCLASDSWILRGQEDLGNL----YKLY- 143
+G + ++V +N + L HG S W + N Y +Y
Sbjct: 5 QEEFIDVNGTRVFQRKMVTD-SNRRSIALFHGYSFTSMDW--DKADLFNNYSKIGYNVYA 61
Query: 144 -----------PKNVNWHEHGLYDVPAMIDYILSVT-----RRPTLSYIGHSMGTTMFYV 187
+ D+ ++I R + +G SMG M +
Sbjct: 62 PDYPGFGRSASSEKYGIDR---GDLKHAAEFIRDYLKANGVARSVI--MGASMGGGMVIM 116
Query: 188 MASMRPE 194
P+
Sbjct: 117 TTLQYPD 123
>2wj6_A 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxidoreductase,
alpha/beta hydrolase; HET: ZZ8 SRT; 2.00A {Arthrobacter
nitroguajacolicus} PDB: 2wj4_A* 2wj3_A* 2wm2_A*
Length = 276
Score = 37.1 bits (86), Expect = 0.006
Identities = 18/124 (14%), Positives = 37/124 (29%), Gaps = 21/124 (16%)
Query: 85 LSSETHRTKTQDGYTLTMHRIVPKYANSPPVLLQHGLCLASDSWILRGQ-EDLGNLYKLY 143
++ L + + + P +LL G C + + ++L +++
Sbjct: 1 MTDTYLHETLVFDNKL-SYIDNQRDTDGPAILLLPGWCHDHRVY--KYLIQELDADFRVI 57
Query: 144 PKNVNWHEHGL-------YDVPAMIDYILSV-----TRRPTLSYIGHSMGTTMFYVMASM 191
NW HGL + + L + + HS G + +
Sbjct: 58 --VPNWRGHGLSPSEVPDFGYQEQVKDALEILDQLGVETFLP--VSHSHGGWVLVELLEQ 113
Query: 192 -RPE 194
PE
Sbjct: 114 AGPE 117
>4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural
genomics, joint center structural genomics, JCSG; HET:
MSE; 1.50A {Pseudomonas aeruginosa}
Length = 315
Score = 37.1 bits (86), Expect = 0.006
Identities = 27/143 (18%), Positives = 39/143 (27%), Gaps = 53/143 (37%)
Query: 89 THRTKTQDGYTLTMH--RIVPKYANSPPVLLQHGLCLASDSW--------------I--- 129
+ T G L+M + PK AN +LL HG + +W I
Sbjct: 21 HYLDFTSQGQPLSMAYLDVAPKKANGRTILLMHGKNFCAGTWERTIDVLADAGYRVIAVD 80
Query: 130 LRGQEDLGNLYKLYPKNVNWHEHGLYDVPAMIDYILSV-------------TRRPTLSYI 176
G PA Y R ++ I
Sbjct: 81 QVG-------------------FCKSSKPAHYQYSFQQLAANTHALLERLGVARASV--I 119
Query: 177 GHSMGTTMFYVMASMRPEYNRKI 199
GHSMG + A + P ++
Sbjct: 120 GHSMGGMLATRYALLYPRQVERL 142
>3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A
{Escherichia coli} PDB: 3bf8_A
Length = 255
Score = 36.2 bits (84), Expect = 0.011
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 17/114 (14%)
Query: 111 NSPPVLLQHGLCLASDSWILRGQEDLGNLYKLYPKNVNWHEHGL------YDVPAMIDYI 164
N+ P++L HGL + D+ + + DL N + + V+ HGL + PAM +
Sbjct: 15 NNSPIVLVHGLFGSLDNLGVLAR-DLVNDHNII--QVDVRNHGLSPREPVMNYPAMAQDL 71
Query: 165 LSVTR-----RPTLSYIGHSMGTTMFYVMASMRPEYNRKINLQISLAPVAYVSR 213
+ + T IGHSMG + ++ P+ K+ I +APV Y R
Sbjct: 72 VDTLDALQIDKATF--IGHSMGGKAVMALTALAPDRIDKLVA-IDIAPVDYHVR 122
>2x5x_A PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE, hydrolase,
biodegradation, catal; HET: PG4; 1.20A {Paucimonas
lemoignei} PDB: 2vtv_A* 2x76_A
Length = 342
Score = 36.0 bits (82), Expect = 0.015
Identities = 19/127 (14%), Positives = 37/127 (29%), Gaps = 30/127 (23%)
Query: 110 ANSPPVLLQHGLCLASDSWILRGQEDLG-----NLYKLYPKNVNWHEHGLY--------- 155
A PV+ HG + S+ + G K +++ ++
Sbjct: 38 ATKTPVIFIHGNGDNAISFDMPPGNVSGYGTPARSVYAELKARGYNDCEIFGVTYLSSSE 97
Query: 156 ---------------DVPAMIDYILSVTRRPTLSYIGHSMGTTMFYVMASMRPEYNRKIN 200
+ ID + + T + + + HSMG +M +
Sbjct: 98 QGSAQYNYHSSTKYAIIKTFIDKVKAYTGKSQVDIVAHSMGVSMSL-ATLQYYNNWTSVR 156
Query: 201 LQISLAP 207
I+LA
Sbjct: 157 KFINLAG 163
>1r3d_A Conserved hypothetical protein VC1974; structural genomics,
hydrolase, NYSGXRC, NEW YORK SGX research center for
structural genomics, PSI; 1.90A {Vibrio cholerae} SCOP:
c.69.1.35
Length = 264
Score = 35.0 bits (81), Expect = 0.025
Identities = 19/134 (14%), Positives = 34/134 (25%), Gaps = 52/134 (38%)
Query: 110 ANSPPVLLQHGLCLASDSWI-----------------LRGQEDLGNLYKLYPKNVNWHEH 152
A +P V+L HGL + W L G H
Sbjct: 14 ARTPLVVLVHGLLGSGADWQPVLSHLARTQCAALTLDLPG-------------------H 54
Query: 153 GL------YDVPAMIDYILSVTRRPTLSY-----IGHSMG--TTMFYVMASMRPEYNRKI 199
G + ++ I + S +G+S+G M + +
Sbjct: 55 GTNPERHCDNFAEAVEMIEQTVQAHVTSEVPVILVGYSLGGRLIM--HGLAQGAFSRLNL 112
Query: 200 NLQISLAPVAYVSR 213
I + + +
Sbjct: 113 RGAI-IEGGHFGLQ 125
>1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13
Length = 305
Score = 35.0 bits (80), Expect = 0.028
Identities = 20/163 (12%), Positives = 49/163 (30%), Gaps = 24/163 (14%)
Query: 90 HRTKTQDGYTLTMHRIVPKYANS---PPVLLQHGLCLASDSWILRGQEDLGNLYKLY--- 143
H + +G L + PK +L+ G D + + N + ++
Sbjct: 10 HVLRVNNGQELHVWETPPKENVPFKNNTILIASGFARRMDHFAGLAEYLSTNGFHVFRYD 69
Query: 144 -----------PKNVNWHEHGLYDVPAMIDYILSVTRRPTLSYIGHSMGTTMFYVMASMR 192
G + + ++ + + + I S+ + Y + S
Sbjct: 70 SLHHVGLSSGSIDEFTMTT-GKNSLCTVYHWLQTKGTQN-IGLIAASLSARVAYEVIS-- 125
Query: 193 PEYNRKINLQISLAPVAYVSRMKSYPLVFKHFADNIKYITKVL 235
+ +++ I+ V + L F + + I + L
Sbjct: 126 ---DLELSFLITAVGVVNLRDTLEKALGFDYLSLPIDELPNDL 165
>3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase,
cinnamoyl/Fe esterase, hydroxycinammates, extracellular;
HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A*
3pfc_A* 3s2z_A* 3pf8_A 3qm1_A*
Length = 270
Score = 34.4 bits (79), Expect = 0.039
Identities = 20/113 (17%), Positives = 43/113 (38%), Gaps = 16/113 (14%)
Query: 156 DVPAMIDYILSVTRRPTLSYIGHSMGTTMFYVMASMRPEYNRKINLQISLAPVAYV---- 211
D A+++Y+ + + +GH+ G + ++A + P+ I + LAP A +
Sbjct: 104 DANAILNYVKTDPHVRNIYLVGHAQGGVVASMLAGLYPD---LIKKVVLLAPAATLKGDA 160
Query: 212 --SRMKSYPLVFKHFADNIKYITKVLRKN-----RKYEILE--RRLANPIAII 255
+ H D + + L ++ I E + P+ +I
Sbjct: 161 LEGNTQGVTYNPDHIPDRLPFKDLTLGGFYLRIAQQLPIYEVSAQFTKPVCLI 213
>2q0x_A Protein DUF1749, uncharacterized protein; alpha/beta hydrolase
fold, structural genomics, structural G of pathogenic
protozoa consortium; 2.20A {Trypanosoma brucei}
Length = 335
Score = 34.7 bits (79), Expect = 0.045
Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 8/110 (7%)
Query: 150 HEHGLYDVPAMIDYILSVTRRPTLSYIGHSMGT--TMFYVMASMRPEYNRKINLQISLAP 207
H H DV +I +L ++ S GT + S I I
Sbjct: 87 HAHDAEDVDDLIGILLRDHCMNEVALFATSTGTQLVFELLENSAHKS---SITRVILHGV 143
Query: 208 VAYVSRMKSYPLVFKHFADNIKYITKVLRKNRKYEILERRLANPIAIICK 257
V ++ + A +++ K++ + R + L I I
Sbjct: 144 ---VCDPENPLFTPEGCAARKEHVEKLMAEGRGEDSLAMLKHYDIPITPA 190
>2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE PGE; 1.96A {Bacillus subtilis}
Length = 306
Score = 33.5 bits (77), Expect = 0.093
Identities = 26/133 (19%), Positives = 44/133 (33%), Gaps = 27/133 (20%)
Query: 78 ELLRKWGLSSETHRTKTQDGYTLTMHRIVPKYANSPPVLLQHGLCLASDSWILRGQ-EDL 136
E L W + ++ T+ G H I ++PP++L HG +S W D
Sbjct: 36 ESLSLWPVRCKSFYISTRFG---QTHVIASGPEDAPPLVLLHGALFSSTMW--YPNIADW 90
Query: 137 GNLYKLY----------PKNVNWHEHGLYDVPAMIDYILSV-----TRRPTLSYIGHSMG 181
+ Y+ Y E+ +++L V + + IG S+G
Sbjct: 91 SSKYRTYAVDIIGDKNKSI----PENVSGTRTDYANWLLDVFDNLGIEKSHM--IGLSLG 144
Query: 182 TTMFYVMASMRPE 194
PE
Sbjct: 145 GLHTMNFLLRMPE 157
>2qmq_A Protein NDRG2, protein NDR2; alpha/beta-hydrolases fold, NDR
family, developmental protei differentiation,
neurogenesis, phosphorylation; HET: 2PE; 1.70A {Mus
musculus} PDB: 2xmq_A 2xmr_A 2xms_A
Length = 286
Score = 33.2 bits (75), Expect = 0.098
Identities = 21/124 (16%), Positives = 36/124 (29%), Gaps = 18/124 (14%)
Query: 88 ETHRTKTQDGYTLTMHRIVPKYANSPPVLLQHGLCLASDSW-----ILRGQEDLGNLYKL 142
TH +T G ++T P + H + L S +++ +
Sbjct: 12 HTHSVETPYG-SVTFTVYGTPKPKRPAIFTYHDVGLNYKSCFQPLFRFGDMQEIIQNFVR 70
Query: 143 YPKNVNWHEHG------------LYDVPAMIDYILSVTRRPTLSYIGHSMGTTMFYVMAS 190
+ E G L + MI IL T+ +G G + A
Sbjct: 71 VHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQYLNFSTIIGVGVGAGAYILSRYAL 130
Query: 191 MRPE 194
P+
Sbjct: 131 NHPD 134
>3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A,
alternative splicing, hydrolase, phosphoprotein, serine
esterase; 2.00A {Homo sapiens} PDB: 3c5w_P
Length = 316
Score = 33.3 bits (76), Expect = 0.099
Identities = 21/152 (13%), Positives = 40/152 (26%), Gaps = 36/152 (23%)
Query: 103 HRIVPKYANSPPVLLQHGLCLASDSWILRGQEDLGNLYKLYPKNV-----------NWHE 151
R+ + P +LL HG ++ SW + +
Sbjct: 29 FRVYKSGSEGPVLLLLHGGGHSALSW--AVF--TAAIISRVQCRIVALDLRSHGETKVKN 84
Query: 152 HGLYDVPAMIDYILSV--------TRRPTLSYIGHSMG--TTMFYVMASMRPEYNRKINL 201
M + +V L IGHSMG + +++ P +
Sbjct: 85 PEDLSAETMAKDVGNVVEAMYGDLPPPIML--IGHSMGGAIAVHTASSNLVPSLLGLCMI 142
Query: 202 QISLAPVAYVSR-------MKSYPLVFKHFAD 226
+ + ++ P FK +
Sbjct: 143 DV--VEGTAMDALNSMQNFLRGRPKTFKSLEN 172
>1brt_A Bromoperoxidase A2; haloperoxidase, oxidoreductase, alpha/beta
hydrolase fold, mutant M99T; 1.50A {Streptomyces
aureofaciens} SCOP: c.69.1.12 PDB: 1bro_A 1a8u_A 1a7u_A
Length = 277
Score = 32.3 bits (74), Expect = 0.21
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 10/43 (23%)
Query: 89 THRTKTQDGYTLTMHRIVPKYANS---PPVLLQHGLCLASDSW 128
T + L + Y + PV+L HG L+ SW
Sbjct: 4 TVGQENSTSIDL--Y-----YEDHGTGQPVVLIHGFPLSGHSW 39
>1isp_A Lipase; alpha/beta hydrolase fold, hydrolase; 1.30A {Bacillus
subtilis} SCOP: c.69.1.18 PDB: 1i6w_A 1r4z_A* 1r50_A*
2qxu_A 2qxt_A 1t4m_A 1t2n_A 3d2a_A 3qzu_A 3d2b_A 3d2c_A
3qmm_A
Length = 181
Score = 31.6 bits (72), Expect = 0.21
Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 12/107 (11%)
Query: 110 ANSPPVLLQHGLCLASDSW--ILRGQEDLG-NLYKLYPKNVNWHEHGLYD----VPAMID 162
A PV++ HG+ AS ++ I G + KLY + Y+ + +
Sbjct: 1 AEHNPVVMVHGIGGASFNFAGIKSYLVSQGWSRDKLYAVDFWDKTGTNYNNGPVLSRFVQ 60
Query: 163 YILSVTRRPTLSYIGHSMGTTM--FYVMASMRPEYNRKINLQISLAP 207
+L T + + HSMG +Y+ + ++L
Sbjct: 61 KVLDETGAKKVDIVAHSMGGANTLYYIKNLDGGNKVANV---VTLGG 104
>3l80_A Putative uncharacterized protein SMU.1393C; alpha/beta hydrolase
fold, carboxylesterase, Ser- hydrolase; 2.00A
{Streptococcus mutans}
Length = 292
Score = 32.3 bits (73), Expect = 0.22
Identities = 13/123 (10%), Positives = 31/123 (25%), Gaps = 25/123 (20%)
Query: 111 NSPPVLLQHGLCLASDSWILRGQEDLGNLYKLYPKNVN-------------WHEHGLYDV 157
+P + G S + + N+ P ++ +
Sbjct: 40 GNPCFVFLSGAGFFSTAD------NFANIIDKLPDSIGILTIDAPNSGYSPVSNQANVGL 93
Query: 158 PAMIDYILSVTRR---PTLSYIGHSMGTTMFYVMASMRPEYNRKINLQISLAPVAYVSRM 214
++ IL + + HS+G + + + I L P +
Sbjct: 94 RDWVNAILMIFEHFKFQSYLLCVHSIGGFAALQIMNQSSKACLGF---IGLEPTTVMIYR 150
Query: 215 KSY 217
+
Sbjct: 151 AGF 153
>3r0v_A Alpha/beta hydrolase fold protein; structural genomics,
PSI-biology, protein structure initiati alpha/beta
hydrolase; HET: MSE; 1.38A {Sphaerobacter thermophilus}
Length = 262
Score = 31.6 bits (72), Expect = 0.30
Identities = 14/80 (17%), Positives = 23/80 (28%), Gaps = 17/80 (21%)
Query: 113 PPVLLQHGLCLASDSWILRGQ-EDLGNLYKLYPKNVNWHEHGL------YDVPAMIDYIL 165
PPV+L G E L + + + G Y V I+ +
Sbjct: 24 PPVVLVGGALSTRAGG--APLAERLAPHFTVI--CYDRRGRGDSGDTPPYAVEREIEDLA 79
Query: 166 SVT----RRPTLSYIGHSMG 181
++ + G S G
Sbjct: 80 AIIDAAGGAAFV--FGMSSG 97
>1hkh_A Gamma lactamase; hydrolase, alpha/beta hydrolase, CO-factor free
haloperoxidase,; 1.73A {Microbacterium} SCOP: c.69.1.12
PDB: 1hl7_A*
Length = 279
Score = 31.6 bits (72), Expect = 0.34
Identities = 10/40 (25%), Positives = 13/40 (32%), Gaps = 4/40 (10%)
Query: 89 THRTKTQDGYTLTMHRIVPKYANSPPVLLQHGLCLASDSW 128
T + L + PV+L HG L SW
Sbjct: 4 TVGNENSTPIELYYED----QGSGQPVVLIHGYPLDGHSW 39
>1a88_A Chloroperoxidase L; haloperoxidase, oxidoreductase; 1.90A
{Streptomyces lividans} SCOP: c.69.1.12
Length = 275
Score = 31.5 bits (72), Expect = 0.38
Identities = 33/158 (20%), Positives = 46/158 (29%), Gaps = 57/158 (36%)
Query: 113 PPVLLQHGLCLASDSW--------------I---LRGQEDLGNLYKLYPKNVNWHEHGL- 154
PV+ HG L++D W I RG HG
Sbjct: 22 LPVVFHHGWPLSADDWDNQMLFFLSHGYRVIAHDRRG-------------------HGRS 62
Query: 155 ------YDVPAMIDYILSVT-----RRPTLSYIGHSMG--TTMFYVMASMRPEYNRKINL 201
+D+ + ++T R IGHS G Y +A P K L
Sbjct: 63 DQPSTGHDMDTYAADVAALTEALDLRGAVH--IGHSTGGGEVARY-VARAEPGRVAKAVL 119
Query: 202 QISLAPVAYVSRMKSYPLVFKHFADNIKYITKVLRKNR 239
++ PV S L + F + L NR
Sbjct: 120 VSAVPPVMVKSDTNPDGLPLEVFDE----FRAALAANR 153
>2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A*
Length = 251
Score = 31.5 bits (72), Expect = 0.38
Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 8/90 (8%)
Query: 156 DVPAMIDYILSVTRRPTLSYIGHSMG--TTMFYVMASMRPEYNRKINLQISLAPVAYVSR 213
++ A++DY + + GHS G + M A+M + I I L+P A +
Sbjct: 85 NILAVVDYAKKLDFVTDIYMAGHSQGGLSVMLA--AAMERD---IIKALIPLSPAAMIPE 139
Query: 214 MKSYPLVFKHFADNIKYITKVLRKNRKYEI 243
+ + D + I L ++
Sbjct: 140 IARTGELLGLKFDP-ENIPDELDAWDGRKL 168
>1ex9_A Lactonizing lipase; alpha-beta hydrolase fold, phosphonate
inhibitor; HET: OCP; 2.54A {Pseudomonas aeruginosa}
SCOP: c.69.1.18
Length = 285
Score = 30.8 bits (69), Expect = 0.59
Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 110 ANSPPVLLQHGLC-----LASDSWILRGQEDLGNLYKLYPKNVNWH---EHGLYDVPAMI 161
P++L HG+ L D W + ++Y V+ E + +
Sbjct: 5 QTKYPIVLAHGMLGFDNILGVDYWFGIPSALRRDGAQVYVTEVSQLDTSEVRGEQLLQQV 64
Query: 162 DYILSVTRRPTLSYIGHSMGTTMFYVMASMRPEY 195
+ I++++ +P ++ IGHS G +A++RP+
Sbjct: 65 EEIVALSGQPKVNLIGHSHGGPTIRYVAAVRPDL 98
>3qit_A CURM TE, polyketide synthase; thioesterase, alpha/beta hydrolase,
decarboxylase, sulfate elimination, terminal alkene
production; 1.68A {Lyngbya majuscula 19L}
Length = 286
Score = 30.8 bits (70), Expect = 0.59
Identities = 24/115 (20%), Positives = 33/115 (28%), Gaps = 56/115 (48%)
Query: 113 PPVLLQHGL------------CLASDSW--I---LRGQEDLGNLYKLYPKNVNWHEHGL- 154
P VL HG+ LA+ + + L G HG
Sbjct: 27 PVVLCIHGILEQGLAWQEVALPLAAQGYRVVAPDLFG-------------------HGRS 67
Query: 155 --------YDVPAMIDYILSV-----TRRPTLSYIGHSMG--TTMFYVMASMRPE 194
Y + I V + L +GHSMG AS+RP+
Sbjct: 68 SHLEMVTSYSSLTFLAQIDRVIQELPDQPLLL--VGHSMGAMLATAI--ASVRPK 118
>2uz0_A Esterase, tributyrin esterase; alpha/beta hydrolase, hydrolase, A
virulence facto LUNG infection; HET: MSE; 1.7A
{Streptococcus pneumoniae}
Length = 263
Score = 30.1 bits (68), Expect = 0.91
Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 22/88 (25%)
Query: 114 PVL-LQHGLCLASDSWILRGQEDLGNLYKLYPKNV-----------NWHEHGLY------ 155
PVL L HG+ +SW+ R ++ L + V + Y
Sbjct: 42 PVLYLLHGMSGNHNSWLKRT--NVERLLRGTNLIVVMPNTSNGWYTDTQYGFDYYTALAE 99
Query: 156 DVPAMID--YILSVTRRPTLSYIGHSMG 181
++P ++ + ++R G SMG
Sbjct: 100 ELPQVLKRFFPNMTSKREKTFIAGLSMG 127
>1pja_A Palmitoyl-protein thioesterase 2 precursor; hydrolase,
glycoprotein, lysosome; HET: NAG; 2.70A {Homo sapiens}
SCOP: c.69.1.13
Length = 302
Score = 29.8 bits (66), Expect = 1.5
Identities = 18/121 (14%), Positives = 39/121 (32%), Gaps = 9/121 (7%)
Query: 106 VPKYANSPPVLLQHGLCLASDSW-----ILRGQEDLGNLYKL-YPKNVNWHEHGLYDVPA 159
P A+ PV++ HGL +S S+ + + L V
Sbjct: 30 APHRASYKPVIVVHGLFDSSYSFRHLLEYINETHPGTVVTVLDLFDGRESLRPLWEQVQG 89
Query: 160 MIDYILSVTRR--PTLSYIGHSMGTTMFYVMASMRPEYNRKINLQISLAPVAYVSRMKSY 217
+ ++ + + + I +S G + + S+ ++N + +P Y
Sbjct: 90 FREAVVPIMAKAPQGVHLICYSQGGLVCRALLSVMDDHNVD-SFISLSSPQMGQYGDTDY 148
Query: 218 P 218
Sbjct: 149 L 149
>3oos_A Alpha/beta hydrolase family protein; APC67239.0, protein structure
initiative, PSI-2, structural midwest center for
structural genomics, MCSG; HET: MSE PG4; 1.65A {Bacillus
anthracis}
Length = 278
Score = 29.2 bits (66), Expect = 1.7
Identities = 28/156 (17%), Positives = 47/156 (30%), Gaps = 27/156 (17%)
Query: 113 PPVLLQHGLCLASDSWILRGQ-EDLGNLYKLY------------PKNVNWHEHGLYDVPA 159
PP+ + H +D+ + Y +Y K Y +
Sbjct: 24 PPLCVTHLYSEYNDNG--NTFANPFTDHYSVYLVNLKGCGNSDSAK-----NDSEYSMTE 76
Query: 160 MIDYILSVTRRPTLSY-----IGHSMGTTMFYVMASMRPEYNRKINLQISLAPVAYVSRM 214
I + ++ R L GHS G + V A+ E KI + + A Y S
Sbjct: 77 TIKDLEAI--REALYINKWGFAGHSAGGMLALVYATEAQESLTKIIVGGAAASKEYASHK 134
Query: 215 KSYPLVFKHFADNIKYITKVLRKNRKYEILERRLAN 250
S + I I L + + + L+
Sbjct: 135 DSIYCSKNVKFNRIVSIMNALNDDSTVQEERKALSR 170
>1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate
complex; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.12
Length = 273
Score = 29.2 bits (66), Expect = 1.8
Identities = 19/98 (19%), Positives = 25/98 (25%), Gaps = 50/98 (51%)
Query: 113 PPVLLQHGLCLASDSW--------------I---LRGQEDLGNLYKLYPKNVNWHEHGL- 154
P++ HG L +DSW I RG HG
Sbjct: 20 QPIVFSHGWPLNADSWESQMIFLAAQGYRVIAHDRRG-------------------HGRS 60
Query: 155 ------YDVPAMIDYILSVT-----RRPTLSYIGHSMG 181
D+ D + + R L G S G
Sbjct: 61 SQPWSGNDMDTYADDLAQLIEHLDLRDAVL--FGFSTG 96
>3bdv_A Uncharacterized protein DUF1234; DUF1234 family protein,
alpha/beta-hydrolases fold, structur genomics; HET: MSE;
1.66A {Pectobacterium atrosepticum SCRI1043}
Length = 191
Score = 28.8 bits (64), Expect = 2.0
Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 8/106 (7%)
Query: 99 TLTMHRIVPKYANSPPVLLQHGLCLAS--DSWILRGQEDLGNLYKLYPKNVNWHEHGLYD 156
T + + + + ++L GL S + W + + ++ + W++ L
Sbjct: 4 TTEIDLRLTEVSQQLTMVLVPGL-RDSDDEHWQSHWERRFPHWQRIRQR--EWYQADLDR 60
Query: 157 -VPAMIDYILSVTRRPTLSYIGHSMGTTMFYVMASMRPEYNRKINL 201
V A+ + T+ L IGHS G + E + L
Sbjct: 61 WVLAIRRELSVCTQPVIL--IGHSFGALAACHVVQQGQEGIAGVML 104
>3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT
peroxidase, oxidoreductase; 1.74A {Bacillus anthracis
str}
Length = 281
Score = 28.9 bits (65), Expect = 2.3
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 10/43 (23%)
Query: 89 THRTKTQDGYTLTMHRIVPKYANS---PPVLLQHGLCLASDSW 128
T T+ Q + Y + PV+L HG L+ SW
Sbjct: 8 TVGTENQAPIEIY-------YEDHGTGKPVVLIHGWPLSGRSW 43
>3vdx_A Designed 16NM tetrahedral protein CAGE containing bromoperoxidase
BPO-A2 and matrix...; protein design, bionanotechnology;
3.00A {Streptomyces aureofaciens} PDB: 4d9j_A
Length = 456
Score = 29.0 bits (65), Expect = 2.5
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 10/43 (23%)
Query: 89 THRTKTQDGYTLTMHRIVPKYANS---PPVLLQHGLCLASDSW 128
T + L + Y + PV+L HG L+ SW
Sbjct: 5 TVGQENSTSIDL--Y-----YEDHGTGVPVVLIHGFPLSGHSW 40
>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP;
1.90A {Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R*
2nck_R 3pj9_A
Length = 144
Score = 27.9 bits (63), Expect = 3.3
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 34 RNIISSIIERFLSGGLSITAI 54
+ +I II RF GL AI
Sbjct: 16 KGVIGKIISRFEEKGLKPVAI 36
>1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida}
PDB: 4dgq_A
Length = 276
Score = 28.4 bits (64), Expect = 3.3
Identities = 17/98 (17%), Positives = 27/98 (27%), Gaps = 50/98 (51%)
Query: 113 PPVLLQHGLCLASDSW--------------I---LRGQEDLGNLYKLYPKNVNWHEHGL- 154
P + HG L++D W + RG HG
Sbjct: 23 PVIHFHHGWPLSADDWDAQLLFFLAHGYRVVAHDRRG-------------------HGRS 63
Query: 155 ------YDVPAMIDYILSVT-----RRPTLSYIGHSMG 181
+D+ D + +V + +GHS G
Sbjct: 64 SQVWDGHDMDHYADDVAAVVAHLGIQGAVH--VGHSTG 99
>2e3j_A Epoxide hydrolase EPHB; epoxide hydrolase B, structural
mycobacterium tuberculosis structural proteomics
project, X hydrolase; 2.10A {Mycobacterium tuberculosis}
PDB: 2zjf_A*
Length = 356
Score = 28.8 bits (64), Expect = 3.4
Identities = 23/118 (19%), Positives = 41/118 (34%), Gaps = 14/118 (11%)
Query: 89 THRTKTQDGYTLTMHRIVPKYANSPPVLLQHGLCLASDSWILRGQ-EDLGNL-YKL---- 142
HR G + P P V+L HG + SW R Q L Y++
Sbjct: 4 VHRILNCRGTRIHAVADSPPDQQGPLVVLLHGFPESWYSW--RHQIPALAGAGYRVVAID 61
Query: 143 ---YPKNVNWHEHGLYDVPAMIDYILSVTR---RPTLSYIGHSMGTTMFYVMASMRPE 194
Y ++ + Y + ++ ++ V +GH G + + A + P+
Sbjct: 62 QRGYGRSSKYRVQKAYRIKELVGDVVGVLDSYGAEQAFVVGHDWGAPVAWTFAWLHPD 119
>4ek2_A Nucleoside diphosphate kinase; seattle structural genomics center
for infectious disease, S DAMP, niaid; HET: DA; 2.00A
{Burkholderia thailandensis} PDB: 4dut_A*
Length = 145
Score = 27.9 bits (63), Expect = 3.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 34 RNIISSIIERFLSGGLSITAI 54
+N+I I RF + GL I A
Sbjct: 21 KNVIGQIYSRFENAGLKIVAA 41
>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer,
signaling protein,transferase; 1.62A {Escherichia coli}
Length = 142
Score = 27.8 bits (63), Expect = 3.4
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 34 RNIISSIIERFLSGGLSITAI 54
+N+I +I RF + G I
Sbjct: 16 KNVIGNIFARFEAAGFKIVGT 36
>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase;
phosphotransferase nucleotide binding, ATP-binding,
magnesium, metal-binding; HET: TYD; 1.50A {Acanthamoeba
polyphaga mimivirus} PDB: 3ejm_A* 3emt_A* 3em1_A*
3fc9_A* 3g2x_A* 3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A*
3fcv_A* 3b6b_A* 2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A*
3eic_A* 3evw_A* 3gpa_A* ...
Length = 146
Score = 27.9 bits (63), Expect = 3.6
Identities = 6/30 (20%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 34 RNIISSIIERFLSGGLSITAIMFKSLRKIS 63
R++++ I+ R I ++ K K
Sbjct: 20 RSLVAEIMGRIEKKNFKIVSM--KFWSKAP 47
>3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog,
hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas
fluorescens} PDB: 1va4_A 3hi4_A 3hea_A
Length = 271
Score = 28.4 bits (64), Expect = 3.9
Identities = 24/91 (26%), Positives = 33/91 (36%), Gaps = 36/91 (39%)
Query: 113 PPVLLQHGLCLASDSW--------------I---LRG-----QEDLGNLYKLYPKNVNWH 150
PVL HG L +D W I RG Q GN Y +
Sbjct: 20 KPVLFSHGWLLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGNDYDTFAD----- 74
Query: 151 EHGLYDVPAMIDYILSVTRRPTLSYIGHSMG 181
D+ +I++ L + + TL +G SMG
Sbjct: 75 -----DIAQLIEH-LDL-KEVTL--VGFSMG 96
>3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad,
rotation; 1.60A {Lactobacillus rhamnosus} PDB: 3dlt_A
3dyi_A 3dyv_A 3e1g_A
Length = 251
Score = 27.9 bits (62), Expect = 4.3
Identities = 12/104 (11%), Positives = 28/104 (26%), Gaps = 6/104 (5%)
Query: 146 NVNWHEHGLYDVPAMIDYILSVTRRPTLSYIGHSMGTTMFYVMASMRPEYNRKINLQISL 205
+ + A + ++ + + + G S+G P +
Sbjct: 70 TKGNPDIWWAESSAAVAHMTAKYAKVFV--FGLSLGGIFAMKALETLPG---ITAGGVFS 124
Query: 206 APVAYVSRMKSYPLVFKHFADNIKYITKVLRKNRKYEILERRLA 249
+P + P K+ + K + L +LA
Sbjct: 125 SP-ILPGKHHLVPGFLKYAEYMNRLAGKSDESTQILAYLPGQLA 167
>3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase
fold, hydrolase; 1.20A {Bacillus SP}
Length = 270
Score = 27.9 bits (62), Expect = 5.1
Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 4/68 (5%)
Query: 176 IGHSMGTTMFYVMASMRPEYNRKINLQISLAPVAYVSRMKSYPLVFKHFADNIKYITKVL 235
G SMG T+ +A P+ + + + + + + I L
Sbjct: 114 TGLSMGGTLTLYLAEHHPDICGI----VPINAAVDIPAIAAGMTGGGELPRYLDSIGSDL 169
Query: 236 RKNRKYEI 243
+ E+
Sbjct: 170 KNPDVKEL 177
>3ztp_A Nucleoside diphosphate kinase; transferase; HET: GOL; 1.37A
{Aquifex aeolicus} PDB: 3zto_A* 3ztq_A 3ztr_A 3zts_A
Length = 142
Score = 27.1 bits (61), Expect = 5.2
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 34 RNIISSIIERFLSGGLSITAI 54
+ + I++RF+ G I A+
Sbjct: 17 KGALGKILDRFIQEGFQIKAL 37
>1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate,
transferase; 2.60A {Mycobacterium tuberculosis} SCOP:
d.58.6.1
Length = 136
Score = 27.1 bits (61), Expect = 5.3
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 34 RNIISSIIERFLSGGLSITAI 54
R +I II R GL+I A+
Sbjct: 16 RQLIGEIISRIERKGLTIAAL 36
>1c4x_A BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoat hydrolase);
PCB degradation; 2.40A {Rhodococcus SP} SCOP: c.69.1.10
Length = 285
Score = 27.7 bits (62), Expect = 5.8
Identities = 19/111 (17%), Positives = 35/111 (31%), Gaps = 21/111 (18%)
Query: 88 ETHRTKTQDGYTLTMHRIVPKYANSPPVLLQHGLCLASDSWIL-RGQ-EDLGNLYKLY-- 143
+ H +V SP V+L HG + + R DL + +
Sbjct: 7 IIEKRFPSGTLAS--HALVAGDPQSPAVVLLHGAGPGAHAASNWRPIIPDLAENFFVVAP 64
Query: 144 --------PKNVNWHEHGLYDVPAMIDYILSVT-----RRPTLSYIGHSMG 181
+ H + V ++ IL + + + +G+SMG
Sbjct: 65 DLIGFGQSEYPETYPGHIMSWVGMRVEQILGLMNHFGIEKSHI--VGNSMG 113
>2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural
genomics, NPPSFA, NAT project on protein structural and
functional analyses; HET: GDP; 1.70A {Pyrococcus
horikoshii} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A*
2dy9_A* 2dya_A*
Length = 160
Score = 27.2 bits (61), Expect = 6.2
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 34 RNIISSIIERFLSGGLSITAI 54
R +I II RF GL I +
Sbjct: 21 RGLIGEIISRFEKKGLKIVGM 41
>3mpd_A Nucleoside diphosphate kinase; ssgcid, NIH, niaid, SBRI, UW,
emerald biostructures, encepha cuniculi, structural
genomics; 2.08A {Encephalitozoon cuniculi}
Length = 151
Score = 27.1 bits (61), Expect = 6.3
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 34 RNIISSIIERFLSGGLSITAI 54
R +IS II+RF GL + A
Sbjct: 19 RRLISRIIQRFEEKGLYLAAS 39
>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.00A {Thermus thermophilus} SCOP:
d.58.6.1 PDB: 1wkk_A* 1wkl_A*
Length = 137
Score = 26.7 bits (60), Expect = 6.8
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 34 RNIISSIIERFLSGGLSITAI 54
R ++ I+ RF G I A+
Sbjct: 15 RGLVGEILARFERKGFRIAAL 35
>1a8q_A Bromoperoxidase A1; haloperoxidase, oxidoreductase; 1.75A
{Streptomyces aureofaciens} SCOP: c.69.1.12
Length = 274
Score = 27.3 bits (61), Expect = 7.0
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 113 PPVLLQHGLCLASDSW 128
PV+ HG L D+W
Sbjct: 20 RPVVFIHGWPLNGDAW 35
>1nb2_A Nucleoside diphosphate kinase; bacillus halodenitrifians,
transferase; 2.20A {Virgibacillus halodenitrificans}
SCOP: d.58.6.1
Length = 150
Score = 26.7 bits (60), Expect = 7.2
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 34 RNIISSIIERFLSGGLSITAI 54
RN++ +++RF S GL +
Sbjct: 16 RNLVGEVVKRFESKGLKLAGA 36
>1m33_A BIOH protein; alpha-betta-alpha sandwich, structural genomics, PSI,
protei structure initiative; HET: MSE 3OH; 1.70A
{Escherichia coli} SCOP: c.69.1.26
Length = 258
Score = 27.2 bits (61), Expect = 7.5
Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 14/77 (18%)
Query: 113 PPVLLQHGLCLASDSWILRGQ-EDLGNLYKLYPKNVNWHEHGL------YDVPAMIDYIL 165
++L HG L ++ W R E+L + + L+ V+ G + M + +L
Sbjct: 14 VHLVLLHGWGLNAEVW--RCIDEELSSHFTLH--LVDLPGFGRSRGFGALSLADMAEAVL 69
Query: 166 SV-TRRPTLSYIGHSMG 181
+ +G S+G
Sbjct: 70 QQAPDKAIW--LGWSLG 84
>1s57_A Nucleoside diphosphate kinase II; transferase; HET: EPE; 1.80A
{Arabidopsis thaliana} SCOP: d.58.6.1 PDB: 1s59_A*
Length = 153
Score = 26.7 bits (60), Expect = 7.6
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 34 RNIISSIIERFLSGGLSITAI 54
R ++ II RF G + +
Sbjct: 19 RGLVGEIISRFEKKGFKLIGL 39
>1xqi_A Nucleoside diphosphate kinase; alpha/beta sandwich, ferredoxin
fold, transferase; HET: PGE; 2.50A {Pyrobaculum
aerophilum} SCOP: d.58.6.1
Length = 195
Score = 27.2 bits (60), Expect = 7.7
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 33 SRNIISSIIERFLSGGLSITAIMF 56
+R ++ II RF GL I A+
Sbjct: 28 ARGLVDEIISRFKKAGLKIVALKM 51
>1xiq_A Nucleoside diphosphate kinase B; protein structure initiative,
structural genomics, SGPP; 3.05A {Plasmodium
falciparum} SCOP: d.58.6.1
Length = 157
Score = 26.8 bits (60), Expect = 7.8
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 34 RNIISSIIERFLSGGLSITAI 54
R ++ +II+RF G + AI
Sbjct: 23 RGLVGTIIKRFEKKGYKLIAI 43
>3q8u_A Nucleoside diphosphate kinase; ferridoxin fold, alpha-beta
protein family; HET: ADP; 2.22A {Staphylococcus aureus
subsp} PDB: 3q83_A* 3q89_A* 3q86_A* 3q8v_A* 3q8y_A*
Length = 157
Score = 26.8 bits (60), Expect = 7.9
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 34 RNIISSIIERFLSGGLSITAI 54
RN+I +I R GL +
Sbjct: 15 RNLIGEVISRIERKGLKLVGG 35
>1pku_A Nucleoside diphosphate kinase I; RICE, transferase; 2.50A {Oryza
sativa} SCOP: d.58.6.1
Length = 150
Score = 26.7 bits (60), Expect = 8.0
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 34 RNIISSIIERFLSGGLSITAI 54
R +I II RF G + +
Sbjct: 16 RGLIGDIISRFEKKGFYLRGM 36
>1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial,
killer-O transferase; 2.40A {Homo sapiens} SCOP:
d.58.6.1
Length = 162
Score = 26.8 bits (60), Expect = 8.0
Identities = 5/21 (23%), Positives = 12/21 (57%)
Query: 34 RNIISSIIERFLSGGLSITAI 54
R ++ +I+RF G ++ +
Sbjct: 38 RRLVGDVIQRFERRGFTLVGM 58
>2xua_A PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, catechol metabolism;
1.90A {Burkholderia xenovorans}
Length = 266
Score = 27.2 bits (61), Expect = 8.0
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 96 DGYTLTMHRIVPKYANSPPVLLQHGLCLASDSW 128
+G L ++ N+P ++L + L W
Sbjct: 10 NGTELHYRIDGERHGNAPWIVLSNSLGTDLSMW 42
>2f9w_A Pantothenate kinase; COAA, transferase; HET: PAU; 1.90A
{Pseudomonas aeruginosa} SCOP: c.55.1.13 c.55.1.13 PDB:
2f9t_A*
Length = 271
Score = 27.4 bits (61), Expect = 8.2
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 7/43 (16%)
Query: 63 SFISVMLLTIRVSNTELLRKWGL-----SSETHRTKTQDGYTL 100
S ++ M+L + N+ + KW + S D +
Sbjct: 19 SHMASMILELDCGNSLI--KWRVIEGAARSVAGGLAESDDALV 59
>2az3_A Nucleoside diphosphate kinase; halophilic, transferase; HET: CDP;
2.20A {Halobacterium salinarum} SCOP: d.58.6.1 PDB:
2az1_A 2zua_A
Length = 164
Score = 26.8 bits (60), Expect = 8.5
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 34 RNIISSIIERFLSGGLSITAI 54
R +I I+ R + GL +
Sbjct: 22 RGLIGDIVTRLETKGLKMVGG 42
>1u8w_A Nucleoside diphosphate kinase I; nucleotide diphosphate,
transferase; 2.40A {Arabidopsis thaliana} SCOP:
d.58.6.1
Length = 149
Score = 26.7 bits (60), Expect = 8.5
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 34 RNIISSIIERFLSGGLSITAI 54
R +I +I RF G ++ +
Sbjct: 15 RGLIGEVICRFEKKGFTLKGL 35
>2vu5_A Nucleoside diphosphate kinase; nucleotide-binding, ATP-binding,
metal-binding, phosphoprotein, nucleotide metabolism,
cytoplasm, magnesium; 2.0A {Bacillus anthracis}
Length = 148
Score = 26.7 bits (60), Expect = 8.6
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 34 RNIISSIIERFLSGGLSITAI 54
R I I+ RF G +
Sbjct: 15 RAFIGEIVARFEKKGFQLVGA 35
>4dz6_A Nucleoside diphosphate kinase; ssgcid, niaid, vanada transition
state mimic, transition state analog, transferas; HET:
ADP; 2.20A {Borrelia burgdorferi} PDB: 4di6_A*
Length = 190
Score = 27.0 bits (60), Expect = 8.8
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 34 RNIISSIIERFLSGGLSITAI 54
R +I ++ RF GL + A
Sbjct: 40 RGLIGDVVSRFERVGLKMVAA 60
>2k2q_B Surfactin synthetase thioesterase subunit; A/B-hydrolase, NRPS,
non-ribosomal peptide synthetase, type II thioesterase,
antibiotic biosynthesis; NMR {Bacillus subtilis} PDB:
2ron_A
Length = 242
Score = 27.1 bits (60), Expect = 9.0
Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 6/81 (7%)
Query: 154 LYDVPAMIDYILSVTR----RPTLSYIGHSMGTTMFYVMASMRPEYNRKINLQISLAPVA 209
+ D+ + D RP GHSMG + + +A I A
Sbjct: 58 IEDLEELTDLYKQELNLRPDRP-FVLFGHSMGGMITFRLAQKLEREGIFPQAVIISAIQP 116
Query: 210 -YVSRMKSYPLVFKHFADNIK 229
++ R K L F D+I
Sbjct: 117 PHIQRKKVSHLPDDQFLDHII 137
>3fkb_A NDP kinase, NDK, nucleoside diphosphate kinase, cytosolic; AN
hexamer structure, ATP-binding, magnesium, metal-
nucleotide metabolism; HET: TNM TNV; 1.65A
{Dictyostelium discoideum} PDB: 1b4s_A* 1mn9_A* 1f3f_A*
1hlw_A 1ndk_A 1pae_X 1f6t_A* 1bux_A* 1b99_A* 1hiy_A*
1kdn_A* 1ndc_A* 1ndp_A* 1nsp_A* 1s5z_A* 2bef_A* 1mn7_A*
1hhq_A 1lwx_A* 1npk_A ...
Length = 155
Score = 26.4 bits (59), Expect = 9.5
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 34 RNIISSIIERFLSGGLSITAI 54
R ++ II R+ G + +
Sbjct: 22 RGLVGEIIARYEKKGFVLVGL 42
>3b54_A NDK, NDP kinase, nucleoside diphosphate kinase; alpha/beta
sandwich, ATP-binding, magnesium, metal-B
mitochondrion; 3.10A {Saccharomyces cerevisiae}
Length = 161
Score = 26.4 bits (59), Expect = 9.5
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 34 RNIISSIIERFLSGGLSITAI 54
R ++S I+ RF G + AI
Sbjct: 27 RGLVSQILSRFEKKGYKLVAI 47
>3r9l_A Nucleoside diphosphate kinase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, giardiasis; 2.65A {Giardia lamblia}
Length = 155
Score = 26.4 bits (59), Expect = 9.5
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 34 RNIISSIIERFLSGGLSITAI 54
R ++ II RF G + A+
Sbjct: 21 RGLVGEIISRFERRGFKLVAM 41
>3bbb_A Nucleoside diphosphate kinase B; transcription factor, cancer,
NM23 GEN, hexamer, activator, oncogene, ATP-binding,
cell cycle, DNA-binding; HET: DG DA; 1.30A {Homo
sapiens} SCOP: d.58.6.1 PDB: 1nue_A* 3bbf_A* 1nsk_R
3bbc_A 1be4_A* 1bhn_A* 2hvd_A* 1jxv_A* 2hve_A* 1ucn_A*
1nsq_A* 1ndl_A*
Length = 151
Score = 26.3 bits (59), Expect = 9.6
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 34 RNIISSIIERFLSGGLSITAI 54
R ++ II+RF G + A+
Sbjct: 17 RGLVGEIIKRFEQKGFRLVAM 37
>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III
pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus
anthracis str}
Length = 268
Score = 26.9 bits (60), Expect = 9.8
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 12/48 (25%)
Query: 68 MLLTIRVSNT----------ELLRKWGLSSETHRTKTQDGYTLTMHRI 105
M+ + V NT EL + W + T R KT+D Y + + ++
Sbjct: 1 MIFVLDVGNTNAVLGVFEEGELRQHWRME--TDRHKTEDEYGMLVKQL 46
>3js9_A Nucleoside diphosphate kinase family protein; niaid, ssgcid,
seattle structural genomics center for infect disease,
babesiosis; 2.50A {Babesia bovis}
Length = 156
Score = 26.4 bits (59), Expect = 9.9
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 34 RNIISSIIERFLSGGLSITAI 54
R +I I++RF GL + A
Sbjct: 23 RGLIGEILKRFEMKGLKLIAA 43
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.138 0.415
Gapped
Lambda K H
0.267 0.0786 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,653,151
Number of extensions: 336670
Number of successful extensions: 957
Number of sequences better than 10.0: 1
Number of HSP's gapped: 933
Number of HSP's successfully gapped: 97
Length of query: 370
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 275
Effective length of database: 4,049,298
Effective search space: 1113556950
Effective search space used: 1113556950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.0 bits)