RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6856
(370 letters)
>d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris)
[TaxId: 9615]}
Length = 377
Score = 146 bits (369), Expect = 3e-41
Identities = 90/322 (27%), Positives = 146/322 (45%), Gaps = 39/322 (12%)
Query: 77 TELLRKWGLSSETHRTKTQDGYTLTMHRIVPKYANS------PPVLLQHGLCLASDSWI- 129
++++ WG +E + T+DGY L + RI NS P LQHGL ++ +WI
Sbjct: 17 SQMITYWGYPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASATNWIS 76
Query: 130 ----------------------LRGQEDLGNLYKLYPKNV-----NWHEHGLYDVPAMID 162
RG P +V ++ E YD+PA ID
Sbjct: 77 NLPNNSLAFILADAGYDVWLGNSRGNTWARRNLYYSPDSVEFWAFSFDEMAKYDLPATID 136
Query: 163 YILSVTRRPTLSYIGHSMGTTMFYVMASMRPEYNRKINLQISLAPVAYVSRMKSYPLVFK 222
+IL T + L Y+GHS GTT+ ++ S P+ ++I +LAPVA V ++
Sbjct: 137 FILKKTGQDKLHYVGHSQGTTIGFIAFSTNPKLAKRIKTFYALAPVATVKYTETLINKLM 196
Query: 223 HFADNIKYITKVLRKNRKYEILERRLANPIAIICKDPTLRPICYQAAFLIIGPDLYQMPD 282
+ + + + ++ LA +C T+ +C A F+I G D + +
Sbjct: 197 LVPSFLFKLIFGNKIFYPHHFFDQFLATE---VCSRETVDLLCSNALFIICGFDTMNL-N 252
Query: 283 ENIITAILTHFPAGTSFKNVIHYLQNIKALDFQGYDYGH-FENMRRYGNFFSPRYNLSAI 341
+ + L+H PAGTS +NV+H+ Q +K+ FQ +D+G +NM Y P YNL+ +
Sbjct: 253 MSRLDVYLSHNPAGTSVQNVLHWSQAVKSGKFQAFDWGSPVQNMMHYHQSMPPYYNLTDM 312
Query: 342 TAPVALFYSNNDYLSHPACNQH 363
P+A++ ND L+ P
Sbjct: 313 HVPIAVWNGGNDLLADPHDVDL 334
>d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida
antarctica), form b [TaxId: 34362]}
Length = 317
Score = 47.4 bits (112), Expect = 1e-06
Identities = 21/122 (17%), Positives = 38/122 (31%), Gaps = 8/122 (6%)
Query: 93 KTQDGYTLTMHRIVPKYANSPPVLLQHGL-CLASDSWILRGQEDLGNL------YKLYPK 145
K+ LT P + S P+LL G S+ L P
Sbjct: 13 KSVLDAGLTCQGASPS-SVSKPILLVPGTGTTGPQSFDSNWIPLSTQLGYTPCWISPPPF 71
Query: 146 NVNWHEHGLYDVPAMIDYILSVTRRPTLSYIGHSMGTTMFYVMASMRPEYNRKINLQISL 205
+N + + I + + + L + S G + + P K++ ++
Sbjct: 72 MLNDTQVNTEYMVNAITALYAGSGNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAF 131
Query: 206 AP 207
AP
Sbjct: 132 AP 133
>d1ex9a_ c.69.1.18 (A:) Lipase {Pseudomonas aeruginosa [TaxId: 287]}
Length = 285
Score = 42.5 bits (99), Expect = 4e-05
Identities = 40/257 (15%), Positives = 77/257 (29%), Gaps = 39/257 (15%)
Query: 107 PKYANSPPVLLQHGLCLASDSWILRGQEDL-----GNLYKLYPKNVNWH---EHGLYDVP 158
KY P++L HG+ + + + + ++Y V+ E +
Sbjct: 6 TKY----PIVLAHGMLGFDNILGVDYWFGIPSALRRDGAQVYVTEVSQLDTSEVRGEQLL 61
Query: 159 AMIDYILSVTRRPTLSYIGHSMGTTMFYVMASMRPEYNRKINLQISLAPVAYVSRMKSYP 218
++ I++++ +P ++ IGHS G +A++RP+ S+ S
Sbjct: 62 QQVEEIVALSGQPKVNLIGHSHGGPTIRYVAAVRPDLIASA---TSVGAPHKGS------ 112
Query: 219 LVFKHFADNIKYITKVLRKNRKYEILERRLANPIAIICKDPTLRPICYQAAFLIIGPDLY 278
AD ++ I L L I+ + T + L
Sbjct: 113 ----DTADFLRQIPPGSAGEAVLSGLVNSLGALISFLSSGSTGTQNSLGS--------LE 160
Query: 279 QMPDENIITAILTHFPAGTSFKNVIHYLQNIKALDFQGYDYGHFENMRRYGNFFSPRYNL 338
+ E +P G + G Y + NF P
Sbjct: 161 SLNSEG-AARFNAKYPQGIPTSACGEGAYKV-----NGVSYYSWSGSSPLTNFLDPSDAF 214
Query: 339 SAITAPVALFYSNNDYL 355
++ + ND L
Sbjct: 215 LGASSLTFKNGTANDGL 231
>d1azwa_ c.69.1.7 (A:) Proline iminopeptidase {Xanthomonas
campestris, pv. citri [TaxId: 339]}
Length = 313
Score = 40.9 bits (94), Expect = 2e-04
Identities = 37/281 (13%), Positives = 81/281 (28%), Gaps = 29/281 (10%)
Query: 88 ETHRTKTQDGYTLTMHRIVPKYANSPPVLLQHGLCLASDSWILRGQEDLGNLYKLYP--- 144
+ K D +TL + + PV++ HG + +R D +
Sbjct: 12 QQGSLKVDDRHTLYFEQCGNP--HGKPVVMLHGGPGGGCNDKMRRFHDPAKYRIVLFDQR 69
Query: 145 ------KNVNWHEHGLYDVPAMIDYILSVTRRPTLSYIGHSMGTTMFYVMASMRPEYNRK 198
+ + ++ +D+ A I+ + + G S G+T+ A P+ +
Sbjct: 70 GSGRSTPHADLVDNTTWDLVADIERLRTHLGVDRWQVFGGSWGSTLALAYAQTHPQQVTE 129
Query: 199 INLQISLAPVAYVSRMKSYPLVFKHFADNIKYITKVLRKNRKYEILERRLANPIAIICKD 258
+ L+ + + F D ++ + + ++ A + D
Sbjct: 130 LVLRGIFLLRRFELEWFYQEGASRLFPDAWEHYLNAIPPVERADL---MSAFHRRLTSDD 186
Query: 259 PTLRPICYQAAFLIIGPDLYQMPDENIITAILTHFPAGTSFKNVIHYLQNIKALDFQGYD 318
R +A + G + DE+ +T A + HY N + +
Sbjct: 187 EATRLAAAKAWSVWEGATSFLHVDEDFVTGHEDAHFALAFARIENHYFVNGGFFEVEDQL 246
Query: 319 YGHFENMRRYGNFFSPRYNLSAITAPVALFYSNNDYLSHPA 359
R P + + D +
Sbjct: 247 L---------------RDAHRIADIPGVIVHGRYDVVCPLQ 272
>d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio
harveyi [TaxId: 669]}
Length = 302
Score = 37.6 bits (86), Expect = 0.002
Identities = 20/181 (11%), Positives = 46/181 (25%), Gaps = 24/181 (13%)
Query: 90 HRTKTQDGYTLTMHRIVPKYANSPP---VLLQHGLCLASDSW--------------ILRG 132
H + +G L + PK +L+ G D +
Sbjct: 7 HVLRVNNGQELHVWETPPKENVPFKNNTILIASGFARRMDHFAGLAEYLSTNGFHVFRYD 66
Query: 133 QEDLGNLYKLYPKNVNWHEHGLYDVPAMIDYILSVTRRPTLSYIGHSMGTTMFYVMASMR 192
L + + ++ + + I S+ + Y + S
Sbjct: 67 SLHHVGLSSGSIDEFTMTTG-KNSLCTVYHWLQTK-GTQNIGLIAASLSARVAYEVIS-- 122
Query: 193 PEYNRKINLQISLAPVAYVSRMKSYPLVFKHFADNIKYITKVLRKNRKYEILERRLANPI 252
+ +++ I+ V + L F + + I + L E + +
Sbjct: 123 ---DLELSFLITAVGVVNLRDTLEKALGFDYLSLPIDELPNDLDFEGHKLGSEVFVRDCF 179
Query: 253 A 253
Sbjct: 180 E 180
>d1mo2a_ c.69.1.22 (A:) Erythromycin polyketide synthase
{Saccharopolyspora erythraea [TaxId: 1836]}
Length = 255
Score = 33.5 bits (76), Expect = 0.028
Identities = 14/105 (13%), Positives = 26/105 (24%), Gaps = 8/105 (7%)
Query: 113 PPVLLQHGLCLASDSWILRG-QEDLGN---LYKLYPKNVNWHEHGLYDVPAMIDYILSVT 168
V+ G S L + + E + A+
Sbjct: 43 VTVICCAGTAAISGPHEFTRLAGALRGIAPVRAVPQPGYEEGEPLPSSMAAVAAVQADAV 102
Query: 169 RR--PTLSYI--GHSMGTTMFYVMASMRPEYNRKINLQISLAPVA 209
R ++ GHS G M Y +A+ + + +
Sbjct: 103 IRTQGDKPFVVAGHSAGALMAYALATELLDRGHPPRGVVLIDVYP 147
>d1ispa_ c.69.1.18 (A:) Lipase A {Bacillus subtilis [TaxId: 1423]}
Length = 179
Score = 33.0 bits (74), Expect = 0.035
Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 8/113 (7%)
Query: 113 PPVLLQHGLCLASDSWIL-------RGQEDLGNLYKLYPKNVNWHEHGLYDVPAMIDYIL 165
PV++ HG+ AS ++ +G + + + + + +L
Sbjct: 3 NPVVMVHGIGGASFNFAGIKSYLVSQGWSRDKLYAVDFWDKTGTNYNNGPVLSRFVQKVL 62
Query: 166 SVTRRPTLSYIGHSMGTTMFYVMASMRPEYNRKINLQISLAPVAYVSRMKSYP 218
T + + HSMG + K+ ++L ++ K+ P
Sbjct: 63 DETGAKKVDIVAHSMGGANTL-YYIKNLDGGNKVANVVTLGGANRLTTGKALP 114
>d1qlwa_ c.69.1.15 (A:) A novel bacterial esterase {Alcaligenes sp.
[TaxId: 512]}
Length = 318
Score = 33.3 bits (74), Expect = 0.039
Identities = 33/204 (16%), Positives = 54/204 (26%), Gaps = 22/204 (10%)
Query: 102 MHRIVPKYANSPPVLLQHGLCLASDSWILRGQEDLGNLYKLYPKN-----VNWHEHGLYD 156
+ +P+ A P+ L HG CL +W +G K ++ G
Sbjct: 48 VRYQIPQRAKRYPITLIHGCCLTGMTWETTPDGRMGWDEYFLRKGYSTYVIDQSGRGRSA 107
Query: 157 VPAMIDYILSVTRRP------------TLSYIGHSMGTTMFYVMASMRPEYNRKINLQIS 204
+ + + P ++ G + + L
Sbjct: 108 TDISAINAVKLGKAPASSLPDLFAAGHEAAWAIFRFGPRYPDAFKDTQFPVQAQAELWQQ 167
Query: 205 LAPVAYVSRMKSYPLVFKHFADNIKYITKVLRKNRKYEILERRLANPI-----AIICKDP 259
+ P S P V IK VL + + I + A AI+ +P
Sbjct: 168 MVPDWLGSMPTPNPTVANLSKLAIKLDGTVLLSHSQSGIYPFQTAAMNPKGITAIVSVEP 227
Query: 260 TLRPICYQAAFLIIGPDLYQMPDE 283
P L P L D
Sbjct: 228 GECPKPEDVKPLTSIPVLVVFGDH 251
>d1wm1a_ c.69.1.7 (A:) Proline aminopeptidase {Serratia marcescens
[TaxId: 615]}
Length = 313
Score = 31.4 bits (69), Expect = 0.16
Identities = 21/146 (14%), Positives = 40/146 (27%), Gaps = 11/146 (7%)
Query: 88 ETHRTKTQDGYTLTMHRIVPKYANSPPVLLQHGLCLASDSWILRGQEDLGNL-------- 139
++ T DG+ + N P + HG S R D
Sbjct: 12 DSGWLDTGDGHRIYWELSGNP--NGKPAVFIHGGPGGGISPHHRQLFDPERYKVLLFDQR 69
Query: 140 -YKLYPKNVNWHEHGLYDVPAMIDYILSVTRRPTLSYIGHSMGTTMFYVMASMRPEYNRK 198
+ + + + + A I+ + + G S G+T+ A PE +
Sbjct: 70 GCGRSRPHASLDNNTTWHLVADIERLREMAGVEQWLVFGGSWGSTLALAYAQTHPERVSE 129
Query: 199 INLQISLAPVAYVSRMKSYPLVFKHF 224
+ L+ + F
Sbjct: 130 MVLRGIFTLRKQRLHWYYQDGASRFF 155
>d2r8ba1 c.69.1.14 (A:44-246) Uncharacterized protein Atu2452
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 203
Score = 30.8 bits (68), Expect = 0.16
Identities = 17/129 (13%), Positives = 37/129 (28%), Gaps = 23/129 (17%)
Query: 94 TQDGYTLTMHRIVPKYANSPPVLLQHGLCLASDSW-------------ILRGQEDLGNLY 140
T+D Y H+ A +P +L HG + + + + +
Sbjct: 2 TKDSY---FHKSRAGVAGAPLFVLLHGTGGDENQFFDFGARLLPQATILSPVGDVSEHGA 58
Query: 141 KLYPKNVNWHEHGLYDVPAMIDYILSVTRRPTLSY-------IGHSMGTTMFYVMASMRP 193
+ + + + D+ + + Y +G S G + + +P
Sbjct: 59 ARFFRRTGEGVYDMVDLERATGKMADFIKANREHYQAGPVIGLGFSNGANILANVLIEQP 118
Query: 194 EYNRKINLQ 202
E L
Sbjct: 119 ELFDAAVLM 127
>d1zd3a2 c.69.1.11 (A:225-547) Mammalian epoxide hydrolase,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 322
Score = 31.4 bits (69), Expect = 0.18
Identities = 40/261 (15%), Positives = 72/261 (27%), Gaps = 23/261 (8%)
Query: 113 PPVLLQHGLCLASDSW--ILRGQEDLG--------NLYKLYPKNVNWHEHGLYDVPAMID 162
P V L HG + SW + G Y E+ + + +
Sbjct: 33 PAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMV 92
Query: 163 YILSVTRRPTLSYIGHSMGTTMFYVMASMRPEYNRKINLQISLAPVAYVSRMKSYPLVFK 222
L +IGH G + + MA PE R SL + PL
Sbjct: 93 TFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRA---VASLNTPFIPANPNMSPLESI 149
Query: 223 HFADNIKYITKVLRKNRKYEILERRLANPIAIICKDPTLRPICYQAAFLIIGPDLYQMPD 282
Y LE+ L+ + + + G + +
Sbjct: 150 KANPVFDYQLYFQEPGVAEAELEQNLSRTFKSLFRASDESVLSMHKVCEAGGLFVNSPEE 209
Query: 283 ENIITAILTHFPAGTSFKNVIHYLQNIKALDFQGYDYGHFENMRRYGNFFSPRYNLSAIT 342
+ + + Y+Q K F+G ++ ++ + I
Sbjct: 210 P--------SLSRMVTEEEIQFYVQQFKKSGFRGPL--NWYRNMERNWKWACKSLGRKIL 259
Query: 343 APVALFYSNNDYLSHPACNQH 363
P + + D++ P +QH
Sbjct: 260 IPALMVTAEKDFVLVPQMSQH 280
>d1cvla_ c.69.1.18 (A:) Lipase {Chromobacterium viscosum [TaxId:
42739]}
Length = 319
Score = 31.0 bits (69), Expect = 0.19
Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 15/117 (12%)
Query: 110 ANSPPVLLQHGLCLASDSWILRG-----QEDL-GNLYKLYPKNVNWH------EHGLYDV 157
A PV+L HGL + Q DL + K+Y N++ +
Sbjct: 6 ATRYPVILVHGLAGTDKFANVVDYWYGIQSDLQSHGAKVYVANLSGFQSDDGPNGRGEQL 65
Query: 158 PAMIDYILSVTRRPTLSYIGHSMGTTMFYVMASMRPEYNRKINLQISLAPVAYVSRM 214
A + +L+ T ++ IGHS G +A++ P+ + ++ S
Sbjct: 66 LAYVKQVLAATGATKVNLIGHSQGGLTSRYVAAVAPQLVASV---TTIGTPHRGSEF 119
>d1dqza_ c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculosis
[TaxId: 1773]}
Length = 280
Score = 30.6 bits (68), Expect = 0.25
Identities = 24/159 (15%), Positives = 40/159 (25%), Gaps = 34/159 (21%)
Query: 102 MHRIVPKY--ANSPPVL-LQHGLCLASDSWILRGQEDLGNLYKLYPKNV----------- 147
M R + P + L GL D Y +V
Sbjct: 16 MGRDIKVQFQGGGPHAVYLLDGLRAQDDYNGWDINTPAFEEYYQSGLSVIMPVGGQSSFY 75
Query: 148 ----------------NWHEHGLYDVPAMIDYILSVTRRPTLSYIGHSMGTTMFYVMASM 191
W ++PA + V+ + +G SM ++A+
Sbjct: 76 TDWYQPSQSNGQNYTYKWETFLTREMPAWLQANKGVSPTGN-AAVGLSMSGGSALILAAY 134
Query: 192 RPEYNRKINLQISLAPVAYVSRMKSYPLVFKHFADNIKY 230
P+ SL+ S L+ D+ Y
Sbjct: 135 YPQQFPYA---ASLSGFLNPSESWWPTLIGLAMNDSGGY 170
>d1jmkc_ c.69.1.22 (C:) Surfactin synthetase, SrfA {Bacillus
subtilis [TaxId: 1423]}
Length = 230
Score = 30.4 bits (67), Expect = 0.25
Identities = 16/174 (9%), Positives = 43/174 (24%), Gaps = 7/174 (4%)
Query: 112 SPPVLLQHGLCLASDSWILRGQEDLGNLYKLYPKNVNWHEHGLYDVPAMIDYILSVTRRP 171
+ + + + YKL + E L D I +
Sbjct: 17 EQIIFAFPPV--LGYGLMYQNLSSRLPSYKLCAFDFIEEEDRLDR---YADLIQKLQPEG 71
Query: 172 TLSYIGHSMGTTMFYVMASMRPEYNRKINLQISLAPVAYVSRMKSYPLVFKHFADNIKYI 231
L+ G+S G ++ + A R + I + + + + +
Sbjct: 72 PLTLFGYSAGCSLAFEAAKKLEGQGRIVQRIIMVDSYKKQGVSDLDGRTVESDVEALMNV 131
Query: 232 TKVLRKNRKYEILE--RRLANPIAIICKDPTLRPICYQAAFLIIGPDLYQMPDE 283
+ + ++ + + L+ + +P+
Sbjct: 132 NRDNEALNSEAVKHGLKQKTHAFYSYYVNLISTGQVKADIDLLTSGADFDIPEW 185
>d1r88a_ c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 267
Score = 30.6 bits (68), Expect = 0.28
Identities = 19/151 (12%), Positives = 33/151 (21%), Gaps = 25/151 (16%)
Query: 102 MHRIVPKY---ANSPPVLLQHGLCLASDSWILRGQEDLGNLYKLYPKNV----------- 147
M R +P V L D + N +V
Sbjct: 14 MGRDIPVAFLAGGPHAVYLLDAFNAGPDVSNWVTAGNAMNTLAGKGISVVAPAGGAYSMY 73
Query: 148 -NWHEHGLYDVPAMIDYILSVTRRPTLSY-------IGHSMGTTMFYVMASMRPEYNRKI 199
NW + G + L +G + G +A+ P+
Sbjct: 74 TNWEQDGSKQWDTFLSAELPDWLAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFA 133
Query: 200 NLQISLAPVAYVSRMKSYPLVFKHFADNIKY 230
S++ Y S + +
Sbjct: 134 ---GSMSGFLYPSNTTTNGAIAAGMQQFGGV 161
>d1pjaa_ c.69.1.13 (A:) Palmitoyl protein thioesterase 2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 268
Score = 29.3 bits (64), Expect = 0.61
Identities = 14/97 (14%), Positives = 36/97 (37%), Gaps = 12/97 (12%)
Query: 112 SPPVLLQHGLCLASDSW--ILRGQEDLGNLYKLYPKNVNWHEHGL------YDVPAMIDY 163
PV++ HGL +S S+ +L + + ++ + V +
Sbjct: 2 YKPVIVVHGLFDSSYSFRHLLEYINETHPGTVVT--VLDLFDGRESLRPLWEQVQGFREA 59
Query: 164 ILSVTRR--PTLSYIGHSMGTTMFYVMASMRPEYNRK 198
++ + + + I +S G + + S+ ++N
Sbjct: 60 VVPIMAKAPQGVHLICYSQGGLVCRALLSVMDDHNVD 96
>d1a8qa_ c.69.1.12 (A:) Bromoperoxidase A1 {Streptomyces
aureofaciens [TaxId: 1894]}
Length = 274
Score = 29.1 bits (63), Expect = 0.78
Identities = 21/142 (14%), Positives = 39/142 (27%), Gaps = 13/142 (9%)
Query: 93 KTQDGYTLTMHRIVPKYANSPPVLLQHGLCLASDSWILRGQEDLGNLYKLY--------- 143
T+DG + + PV+ HG L D+W + + + Y+
Sbjct: 4 TTRDGVEIFYKD----WGQGRPVVFIHGWPLNGDAWQDQLKAVVDAGYRGIAHDRRGHGH 59
Query: 144 PKNVNWHEHGLYDVPAMIDYILSVTRRPTLSYIGHSMGTTMFYVMASMRPEYNRKINLQI 203
V + D + + R G + + R L
Sbjct: 60 STPVWDGYDFDTFADDLNDLLTDLDLRDVTLVAHSMGGGELARYVGRHGTGRLRSAVLLS 119
Query: 204 SLAPVAYVSRMKSYPLVFKHFA 225
++ PV S + + F
Sbjct: 120 AIPPVMIKSDKNPDGVPDEVFD 141
>d1uk8a_ c.69.1.10 (A:) Meta-cleavage product hydrolase CumD
{Pseudomonas fluorescens [TaxId: 294]}
Length = 271
Score = 29.0 bits (63), Expect = 0.80
Identities = 21/165 (12%), Positives = 47/165 (28%), Gaps = 15/165 (9%)
Query: 88 ETHRTKTQDGYTLTMHRIVPKYANSPPVLLQHGLCLASDSW-ILRGQ-EDLGNLYKLY-- 143
E ++ G H PV+L HG ++ R L Y++
Sbjct: 3 EIGKSILAAGVLTNYHD----VGEGQPVILIHGSGPGVSAYANWRLTIPALSKFYRVIAP 58
Query: 144 -------PKNVNWHEHGLYDVPAMIDYILSVTRRPTLSYIGHSMGTTMFYVMASMRPEYN 196
+ + I I+ +G++ G + A E
Sbjct: 59 DMVGFGFTDRPENYNYSKDSWVDHIIGIMDALEIEKAHIVGNAFGGGLAIATALRYSERV 118
Query: 197 RKINLQISLAPVAYVSRMKSYPLVFKHFADNIKYITKVLRKNRKY 241
++ L + V+ + + +N++ + + +R
Sbjct: 119 DRMVLMGAAGTRFDVTEGLNAVWGYTPSIENMRNLLDIFAYDRSL 163
>d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis
[TaxId: 1773]}
Length = 288
Score = 28.8 bits (63), Expect = 0.91
Identities = 28/178 (15%), Positives = 49/178 (27%), Gaps = 39/178 (21%)
Query: 84 GLSSETHRTKTQDGYTLTMHRIVPKY-----ANSPPVLLQHGLCLASDSWILRGQEDLGN 138
GL E + + +M R + ANSP + L GL D
Sbjct: 6 GLPVEYLQV-----PSPSMGRDIKVQFQSGGANSPALYLLDGLRAQDDFSGWDINTPAFE 60
Query: 139 LYKLYPKNVNWHEHG------------------------LYDVPAMIDYILSVTRR-PTL 173
Y +V G + + ++ + PT
Sbjct: 61 WYDQSGLSVVMPVGGQSSFYSDWYQPACGKAGCQTYKWETFLTSELPGWLQANRHVKPTG 120
Query: 174 SYI-GHSMGTTMFYVMASMRPEYNRKINLQISLAPVAYVSRMKSYPLVFKHFADNIKY 230
S + G SM + +A P+ +++ + S+ L+ D Y
Sbjct: 121 SAVVGLSMAASSALTLAIYHPQQFVYA---GAMSGLLDPSQAMGPTLIGLAMGDAGGY 175
>d1a88a_ c.69.1.12 (A:) Chloroperoxidase L {Streptomyces lividans
[TaxId: 1916]}
Length = 275
Score = 28.8 bits (62), Expect = 0.94
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 93 KTQDGYTLTMHRIVPKYANSPPVLLQHGLCLASDSW 128
T DG + P+ + PV+ HG L++D W
Sbjct: 4 TTSDGTNIFYKDWGPR--DGLPVVFHHGWPLSADDW 37
>d1bn7a_ c.69.1.8 (A:) Haloalkane dehalogenase {Rhodococcus sp.
[TaxId: 1831]}
Length = 291
Score = 28.7 bits (62), Expect = 0.98
Identities = 20/128 (15%), Positives = 38/128 (29%), Gaps = 13/128 (10%)
Query: 89 THRTKTQDGYTLTMHRIVPKYANSPPVLLQHGLCLASDSWILRGQ-EDLGNLYKLY---- 143
G MH + + PVL HG +S W R + ++
Sbjct: 8 DPHYVEVLG--ERMHYVDVGPRDGTPVLFLHGNPTSSYLW--RNIIPHVAPSHRCIAPDL 63
Query: 144 ----PKNVNWHEHGLYDVPAMIDYILSVTRRPTLSYIGHSMGTTMFYVMASMRPEYNRKI 199
+ ++ D +D + + + H G+ + + A PE + I
Sbjct: 64 IGMGKSDKPDLDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGI 123
Query: 200 NLQISLAP 207
+ P
Sbjct: 124 ACMEFIRP 131
>d2dyaa1 d.58.6.1 (A:6-158) Nucleoside diphosphate kinase, NDK
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 153
Score = 28.1 bits (62), Expect = 1.1
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 34 RNIISSIIERFLSGGLSITAIMFKSLRK 61
R +I II RF GL I + + +
Sbjct: 16 RGLIGEIISRFEKKGLKIVGMKMIWIDR 43
>d1wkja1 d.58.6.1 (A:1-137) Nucleoside diphosphate kinase, NDK
{Thermus thermophilus [TaxId: 274]}
Length = 137
Score = 28.0 bits (62), Expect = 1.1
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 34 RNIISSIIERFLSGGLSITAIMFKSLRK 61
R ++ I+ RF G I A+ + +
Sbjct: 15 RGLVGEILARFERKGFRIAALKLMQISQ 42
>d2az3a1 d.58.6.1 (A:4-155) Nucleoside diphosphate kinase, NDK
{Archaeon Halobacterium salinarum [TaxId: 2242]}
Length = 152
Score = 27.3 bits (60), Expect = 1.9
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 33 SRNIISSIIERFLSGGLSITAIMFKSLRK 61
R +I I+ R + GL + F + +
Sbjct: 15 QRGLIGDIVTRLETKGLKMVGGKFMRIDE 43
>d1hlwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
{Dictyostelium discoideum [TaxId: 44689]}
Length = 150
Score = 26.9 bits (59), Expect = 2.4
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 34 RNIISSIIERFLSGGLSITAIMFKSL 59
R ++ II R+ G + +
Sbjct: 17 RGLVGEIIARYEKKGFVLVGLKQLVP 42
>d1a8sa_ c.69.1.12 (A:) Chloroperoxidase F {Pseudomonas fluorescens
[TaxId: 294]}
Length = 273
Score = 27.6 bits (59), Expect = 2.6
Identities = 15/127 (11%), Positives = 35/127 (27%), Gaps = 4/127 (3%)
Query: 93 KTQDGYTLTMHRIVPKYANSPPVLLQHGLCLASDSWILRGQEDLGNLYKLYPKNVNWHEH 152
T+DG + + + P++ HG L +DSW + Y++ + H
Sbjct: 4 TTRDGTQIYYKD----WGSGQPIVFSHGWPLNADSWESQMIFLAAQGYRVIAHDRRGHGR 59
Query: 153 GLYDVPAMIDYILSVTRRPTLSYIGHSMGTTMFYVMASMRPEYNRKINLQISLAPVAYVS 212
+ + ++ + + +A +S
Sbjct: 60 SSQPWSGNDMDTYADDLAQLIEHLDLRDAVLFGFSTGGGEVARYIGRHGTARVAKAGLIS 119
Query: 213 RMKSYPL 219
+ L
Sbjct: 120 AVPPLML 126
>d1w7wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Pea
(Pisum sativum) [TaxId: 3888]}
Length = 151
Score = 26.9 bits (59), Expect = 2.6
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 34 RNIISSIIERFLSGGLSITAIMFKSL 59
R +IS II RF G + I
Sbjct: 17 RGLISEIISRFERKGFKLVGIKVLIP 42
>d1xiqa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
{Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}
Length = 149
Score = 26.9 bits (59), Expect = 2.7
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 34 RNIISSIIERFLSGGLSITAIMFKSL 59
R ++ +II+RF G + AI +
Sbjct: 15 RGLVGTIIKRFEKKGYKLIAIKMLNP 40
>d1s57a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale
cress (Arabidopsis thaliana), chloroplast NDK2 [TaxId:
3702]}
Length = 153
Score = 26.9 bits (59), Expect = 2.9
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 34 RNIISSIIERFLSGGLSITAIMF 56
R ++ II RF G + +
Sbjct: 19 RGLVGEIISRFEKKGFKLIGLKM 41
>d1c4xa_ c.69.1.10 (A:) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate
hydrolase (BPHD) {Rhodococcus sp., strain rha1 [TaxId:
1831]}
Length = 281
Score = 27.2 bits (58), Expect = 3.3
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 99 TLTMHRIVPKYANSPPVLLQHGLCLASDSW 128
TL H +V SP V+L HG + +
Sbjct: 13 TLASHALVAGDPQSPAVVLLHGAGPGAHAA 42
>d1mj5a_ c.69.1.8 (A:) Haloalkane dehalogenase {Sphingomonas
paucimobilis, UT26, LinB [TaxId: 13689]}
Length = 298
Score = 27.1 bits (58), Expect = 3.9
Identities = 17/133 (12%), Positives = 34/133 (25%), Gaps = 20/133 (15%)
Query: 89 THRTKTQDGYTLTMHRIVPKYANSPPVLLQHGLCLASDSWILRGQ-EDLGNLYKLY---- 143
+ G + P+L QHG +S W R L +L
Sbjct: 9 EKKFIEIKGRRMAYID----EGTGDPILFQHGNPTSSYLW--RNIMPHCAGLGRLIACDL 62
Query: 144 ---------PKNVNWHEHGLYDVPAMIDYILSVTRRPTLSYIGHSMGTTMFYVMASMRPE 194
+ + ++ + + H G+ + + A E
Sbjct: 63 IGMGDSDKLDPSGPERYAYAEHRDYLDALWEALDLGDRVVLVVHDWGSALGFDWARRHRE 122
Query: 195 YNRKINLQISLAP 207
+ I ++A
Sbjct: 123 RVQGIAYMEAIAM 135
>d1oy2a_ b.55.1.2 (A:) Shc adaptor protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 191
Score = 26.5 bits (58), Expect = 4.0
Identities = 11/70 (15%), Positives = 26/70 (37%), Gaps = 11/70 (15%)
Query: 197 RKINLQISLAPVAYVSRMKSYPLVFKHFADNIKYITKVLRKNRKYEILERRLANPIAIIC 256
I L +S + + ++ ++ H +I + + +Y +A +
Sbjct: 104 MPITLTVSTSSLNLMA-ADCKQIIANHHMQSISFASGGDPDTAEY----------VAYVA 152
Query: 257 KDPTLRPICY 266
KDP + C+
Sbjct: 153 KDPVNQRACH 162
>d1xqia1 d.58.6.1 (A:14-195) Nucleoside diphosphate kinase, NDK
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 182
Score = 26.6 bits (58), Expect = 4.0
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 33 SRNIISSIIERFLSGGLSITAIMFKSLRK 61
+R ++ II RF GL I A+
Sbjct: 15 ARGLVDEIISRFKKAGLKIVALKMVKASP 43
>d1zs6a1 d.58.6.1 (A:18-169) Nucleoside diphosphate kinase, NDK
{Human(Homo sapiens), NDK3 [TaxId: 9606]}
Length = 152
Score = 26.1 bits (57), Expect = 4.4
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 34 RNIISSIIERFLSGGLSITAIMF 56
R ++ I+ RF G + A+
Sbjct: 18 RRLVGEIVRRFERKGFKLVALKL 40
>d1nb2a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
{Bacillus halodenitrificans [TaxId: 1482]}
Length = 149
Score = 26.2 bits (57), Expect = 5.0
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 33 SRNIISSIIERFLSGGLSITAIMFKSLRK 61
RN++ +++RF S GL + + K
Sbjct: 14 QRNLVGEVVKRFESKGLKLAGAKLMVISK 42
>d1imja_ c.69.1.23 (A:) Ccg1/TafII250-interacting factor B (Cib)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 208
Score = 26.6 bits (57), Expect = 5.0
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 89 THRTKTQDGYTLTMHRIVPKYANS-PPVLLQHGLCLASDSWILRGQ 133
T G L +P + VLL HG+ +S++W G
Sbjct: 7 REGTIQVQGQALFFREALPGSGQARFSVLLLHGIRFSSETWQNLGT 52
>d1k44a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 135
Score = 25.7 bits (56), Expect = 5.1
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 34 RNIISSIIERFLSGGLSITAIMFKSLRK 61
R +I II R GL+I A+ +++
Sbjct: 15 RQLIGEIISRIERKGLTIAALQLRTVSA 42
>d1nhkl_ d.58.6.1 (L:) Nucleoside diphosphate kinase, NDK
{Myxococcus xanthus [TaxId: 34]}
Length = 143
Score = 26.1 bits (57), Expect = 5.1
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 34 RNIISSIIERFLSGGLSITAIMFKSLRK 61
+ +I II RF GL AI + L +
Sbjct: 16 KGVIGKIISRFEEKGLKPVAIRLQHLSQ 43
>d1r3da_ c.69.1.35 (A:) Hypothetical protein VC1974 {Vibrio cholerae
[TaxId: 666]}
Length = 264
Score = 26.4 bits (56), Expect = 5.5
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 110 ANSPPVLLQHGLCLASDSW 128
A +P V+L HGL + W
Sbjct: 14 ARTPLVVLVHGLLGSGADW 32
>d1hkha_ c.69.1.12 (A:) Gamma-lactamase {Aureobacterium sp. [TaxId:
51671]}
Length = 279
Score = 26.4 bits (56), Expect = 6.3
Identities = 25/132 (18%), Positives = 42/132 (31%), Gaps = 8/132 (6%)
Query: 113 PPVLLQHGLCLASDSWILRGQEDLGNLYKLY--------PKNVNWHEHGLYDVPAMIDYI 164
PV+L HG L SW + +E L Y++ + + A + +
Sbjct: 24 QPVVLIHGYPLDGHSWERQTRELLAQGYRVITYDRRGFGGSSKVNTGYDYDTFAADLHTV 83
Query: 165 LSVTRRPTLSYIGHSMGTTMFYVMASMRPEYNRKINLQISLAPVAYVSRMKSYPLVFKHF 224
L + +G SMGT + ++ V R + V +
Sbjct: 84 LETLDLRDVVLVGFSMGTGELARYVARYGHERVAKLAFLASLEPFLVQRDDNPEGVPQEV 143
Query: 225 ADNIKYITKVLR 236
D I+ K R
Sbjct: 144 FDGIEAAAKGDR 155
>d3bbba1 d.58.6.1 (A:2-151) Nucleoside diphosphate kinase, NDK
{Human (Homo sapiens) [TaxId: 9606]}
Length = 150
Score = 25.7 bits (56), Expect = 6.4
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 34 RNIISSIIERFLSGGLSITAIMF 56
R ++ II+RF G + A+ F
Sbjct: 17 RGLVGEIIKRFEQKGFRLVAMKF 39
>d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga
maritima [TaxId: 2336]}
Length = 322
Score = 26.2 bits (56), Expect = 7.6
Identities = 12/101 (11%), Positives = 22/101 (21%), Gaps = 3/101 (2%)
Query: 262 RPICYQAAFLIIGPDLYQMPDENIITAILTHFPAGTSFKNVIHYLQNIKALDFQGYDYGH 321
I G L A+L P F+ + + + + H
Sbjct: 179 ERIVIAGGSQGGGIALAVSALSKKAKALLCDVPFLCHFRRAVQLVDTHPYAEITNFLKTH 238
Query: 322 FENMRRYGNFFSPRY---NLSAITAPVALFYSNNDYLSHPA 359
+ S + P D + P+
Sbjct: 239 RDKEEIVFRTLSYFDGVNFAARAKIPALFSVGLMDNICPPS 279
>d2rhwa1 c.69.1.10 (A:4-286)
2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
(BPHD) {Burkholderia xenovorans [TaxId: 36873]}
Length = 283
Score = 25.9 bits (55), Expect = 7.9
Identities = 24/275 (8%), Positives = 55/275 (20%), Gaps = 38/275 (13%)
Query: 86 SSETHRTKTQDGYTLTMHRI-VPKYANSPPVLLQHGLCLASDSWILRGQEDLGNLYKLYP 144
S T + + + I + N V++ HG + W Y
Sbjct: 3 ESSTSKFVKINEKGFSDFNIHYNEAGNGETVIMLHGGGPGAGGW------------SNYY 50
Query: 145 KNVNWHEHGLYDVPAMIDYILSVTRRPTLSYIGHSMGTTMFYVMASMRPEYNRKINLQIS 204
+NV Y V S M + + + +
Sbjct: 51 RNVGPFVDAGYRVIL-----------KDSPGFNKSDAVVMDEQRGLVNARAVKGLMDALD 99
Query: 205 LAPVAYVSRMKSYPLVFKHFADNIKYITKVLRKNRKYEILERRLANPIAIICKDPTLRPI 264
+ V + I +L P+
Sbjct: 100 IDRAHLVGNAMGGATALNFALEYPDRI--------------GKLILMGPGGLGPSMFAPM 145
Query: 265 CYQAAFLIIGPDLYQMPDENIITAILTHFPAGTSFKNVIHYLQNIKALDFQGYDYGHFEN 324
+ L+ + + + + ++ +
Sbjct: 146 PMEGIKLLFKLYAEPSYETLKQMLQVFLYDQSLITEELLQGRWEAIQRQPEHLKNFLISA 205
Query: 325 MRRYGNFFSPRYNLSAITAPVALFYSNNDYLSHPA 359
+ + + L I A + + +D
Sbjct: 206 QKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLD 240
>d1u8wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 149
Score = 25.4 bits (55), Expect = 8.2
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 33 SRNIISSIIERFLSGGLSITAIMFKSLRK 61
R +I +I RF G ++ + S+ +
Sbjct: 14 QRGLIGEVICRFEKKGFTLKGLKLISVER 42
>d1q0ra_ c.69.1.28 (A:) Aclacinomycin methylesterase RdmC
{Streptomyces purpurascens [TaxId: 1924]}
Length = 297
Score = 26.0 bits (55), Expect = 8.2
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 110 ANSPPVLLQHGLCLASDSW 128
P +LL G L++ W
Sbjct: 20 PADPALLLVMGGNLSALGW 38
>d1tqha_ c.69.1.29 (A:) Carboxylesterase Est {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 242
Score = 25.6 bits (54), Expect = 9.1
Identities = 14/95 (14%), Positives = 23/95 (24%), Gaps = 11/95 (11%)
Query: 110 ANSPPVLLQHGLCLASDSWILRGQE-----------DLGNLYKLYPKNVNWHEHGLYDVP 158
A VLL HG S + G+ + V+ +
Sbjct: 9 AGERAVLLLHGFTGNSADVRMLGRFLESKGYTCHAPIYKGHGVPPEELVHTGPDDWWQDV 68
Query: 159 AMIDYILSVTRRPTLSYIGHSMGTTMFYVMASMRP 193
L ++ G S+G + P
Sbjct: 69 MNGYEFLKNKGYEKIAVAGLSLGGVFSLKLGYTVP 103
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase,
beta-subunit {Human (Homo sapiens) [TaxId: 9606]}
Length = 401
Score = 25.8 bits (56), Expect = 9.4
Identities = 8/45 (17%), Positives = 13/45 (28%)
Query: 128 WILRGQEDLGNLYKLYPKNVNWHEHGLYDVPAMIDYILSVTRRPT 172
W L H ++ A+ +YIL + P
Sbjct: 283 WQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPA 327
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.138 0.415
Gapped
Lambda K H
0.267 0.0580 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,386,837
Number of extensions: 65667
Number of successful extensions: 276
Number of sequences better than 10.0: 1
Number of HSP's gapped: 271
Number of HSP's successfully gapped: 58
Length of query: 370
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 283
Effective length of database: 1,213,086
Effective search space: 343303338
Effective search space used: 343303338
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (24.9 bits)