Query psy6858
Match_columns 592
No_of_seqs 281 out of 2145
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 20:11:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6858.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6858hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2584|consensus 100.0 1E-132 2E-137 996.3 35.3 515 12-550 7-522 (522)
2 PLN02942 dihydropyrimidinase 100.0 4.2E-68 9.2E-73 580.8 49.2 457 18-483 4-461 (486)
3 PRK13404 dihydropyrimidinase; 100.0 4.9E-66 1.1E-70 562.4 48.8 454 18-482 3-463 (477)
4 COG0044 PyrC Dihydroorotase an 100.0 5.2E-66 1.1E-70 547.4 43.8 428 19-471 1-428 (430)
5 TIGR02033 D-hydantoinase D-hyd 100.0 1.8E-65 3.9E-70 558.5 48.9 453 21-480 1-454 (454)
6 PRK08323 phenylhydantoinase; V 100.0 1.5E-64 3.3E-69 551.8 48.9 453 19-483 1-455 (459)
7 cd01314 D-HYD D-hydantoinases 100.0 1.5E-64 3.2E-69 550.0 47.5 447 21-475 1-447 (447)
8 PLN02795 allantoinase 100.0 4.2E-63 9.2E-68 541.5 48.4 445 19-481 44-505 (505)
9 PRK08044 allantoinase; Provisi 100.0 1.9E-62 4.1E-67 530.7 46.3 440 18-479 2-449 (449)
10 PRK06189 allantoinase; Provisi 100.0 3.6E-62 7.9E-67 530.2 48.3 443 18-481 2-448 (451)
11 PRK07369 dihydroorotase; Provi 100.0 8.6E-62 1.9E-66 519.8 38.4 414 18-457 1-418 (418)
12 TIGR03178 allantoinase allanto 100.0 4.2E-60 9.2E-65 513.5 46.7 438 20-478 1-442 (443)
13 PRK07627 dihydroorotase; Provi 100.0 1E-60 2.3E-65 512.9 39.6 421 19-465 1-424 (425)
14 cd01315 L-HYD_ALN L-Hydantoina 100.0 1.8E-59 4E-64 510.0 48.1 443 20-479 1-447 (447)
15 PRK09060 dihydroorotase; Valid 100.0 8.7E-59 1.9E-63 501.9 47.9 436 18-483 4-441 (444)
16 PRK09059 dihydroorotase; Valid 100.0 2.4E-59 5.3E-64 502.9 38.8 420 19-464 3-428 (429)
17 PRK07575 dihydroorotase; Provi 100.0 1.7E-58 3.8E-63 499.0 45.5 431 18-479 2-435 (438)
18 PRK09236 dihydroorotase; Revie 100.0 3.1E-58 6.7E-63 498.5 46.6 438 18-480 1-442 (444)
19 PRK02382 dihydroorotase; Provi 100.0 3.3E-58 7.2E-63 498.2 45.1 435 19-483 2-438 (443)
20 PRK01211 dihydroorotase; Provi 100.0 1.5E-58 3.2E-63 491.6 39.1 401 23-481 3-406 (409)
21 PRK08417 dihydroorotase; Provi 100.0 1.6E-56 3.5E-61 476.1 37.4 384 39-464 1-386 (386)
22 PRK09357 pyrC dihydroorotase; 100.0 5.3E-56 1.2E-60 479.4 40.7 421 19-465 1-423 (423)
23 TIGR00857 pyrC_multi dihydroor 100.0 2.5E-55 5.5E-60 471.2 41.0 408 34-465 3-411 (411)
24 PRK04250 dihydroorotase; Provi 100.0 2.1E-54 4.6E-59 459.9 40.8 394 25-478 3-398 (398)
25 PRK00369 pyrC dihydroorotase; 100.0 9.4E-54 2E-58 452.4 38.7 389 19-481 1-390 (392)
26 cd01318 DHOase_IIb Dihydroorot 100.0 7.9E-51 1.7E-55 427.8 34.1 360 66-459 1-361 (361)
27 cd01317 DHOase_IIa Dihydroorot 100.0 1.8E-50 3.9E-55 428.8 31.8 372 59-455 2-374 (374)
28 cd01302 Cyclic_amidohydrolases 100.0 9.2E-50 2E-54 417.0 32.2 335 67-455 1-337 (337)
29 cd01316 CAD_DHOase The eukaryo 100.0 3.1E-47 6.8E-52 396.4 34.7 342 67-475 2-344 (344)
30 PRK09061 D-glutamate deacylase 100.0 7.4E-44 1.6E-48 390.2 37.1 398 18-481 18-507 (509)
31 cd01297 D-aminoacylase D-amino 100.0 5.8E-44 1.3E-48 384.0 33.2 357 20-470 1-410 (415)
32 PRK15446 phosphonate metabolis 100.0 7E-40 1.5E-44 347.5 31.3 362 18-466 1-383 (383)
33 cd01294 DHOase Dihydroorotase 100.0 3.7E-37 8E-42 322.1 23.9 323 69-447 2-331 (335)
34 TIGR02318 phosphono_phnM phosp 100.0 3E-36 6.6E-41 318.7 30.4 356 22-463 1-376 (376)
35 PRK07228 N-ethylammeline chlor 100.0 2.4E-35 5.1E-40 320.6 34.7 379 19-470 1-420 (445)
36 cd01298 ATZ_TRZ_like TRZ/ATZ f 100.0 3E-35 6.4E-40 316.6 34.0 371 21-469 1-411 (411)
37 PRK06687 chlorohydrolase; Vali 100.0 2.7E-34 5.8E-39 309.8 35.6 374 21-471 2-417 (419)
38 PRK15493 5-methylthioadenosine 100.0 1.7E-33 3.7E-38 304.3 35.3 378 19-472 1-418 (435)
39 PRK12394 putative metallo-depe 100.0 1.8E-33 4E-38 299.1 33.0 350 18-466 2-377 (379)
40 PRK10657 isoaspartyl dipeptida 100.0 6.4E-33 1.4E-37 296.4 32.1 364 19-470 1-383 (388)
41 cd00375 Urease_alpha Urease al 100.0 6.7E-33 1.5E-37 296.6 30.3 355 18-470 64-464 (567)
42 TIGR00856 pyrC_dimer dihydroor 100.0 2.7E-33 5.8E-38 291.7 26.1 328 68-452 2-340 (341)
43 PRK06380 metal-dependent hydro 100.0 7.7E-32 1.7E-36 290.7 37.2 373 19-472 1-408 (418)
44 PRK13309 ureC urease subunit a 100.0 2E-32 4.3E-37 296.0 30.8 361 18-470 67-468 (572)
45 PRK13206 ureC urease subunit a 100.0 1.8E-32 3.8E-37 294.8 29.9 362 18-469 70-468 (573)
46 PRK09045 N-ethylammeline chlor 100.0 7.3E-32 1.6E-36 292.8 35.1 372 18-471 6-422 (443)
47 PRK08203 hydroxydechloroatrazi 100.0 8.3E-32 1.8E-36 293.1 35.4 373 21-470 4-430 (451)
48 PRK13985 ureB urease subunit b 100.0 8.9E-33 1.9E-37 294.5 25.7 350 18-465 64-458 (568)
49 PRK13308 ureC urease subunit a 100.0 2.1E-32 4.6E-37 292.9 28.7 350 18-465 67-459 (569)
50 PRK13207 ureC urease subunit a 100.0 5.4E-32 1.2E-36 291.8 31.6 363 18-470 66-464 (568)
51 PRK05451 dihydroorotase; Provi 100.0 1.3E-32 2.7E-37 288.0 25.5 325 68-452 5-343 (345)
52 PRK07203 putative chlorohydrol 100.0 4.6E-31 1E-35 286.5 37.2 373 21-472 2-423 (442)
53 cd01308 Isoaspartyl-dipeptidas 100.0 1.1E-31 2.4E-36 286.7 31.3 362 21-470 2-382 (387)
54 PRK06151 N-ethylammeline chlor 100.0 3.1E-31 6.7E-36 290.8 35.4 375 19-472 1-446 (488)
55 PRK08204 hypothetical protein; 100.0 4.1E-31 8.9E-36 287.7 35.7 371 19-472 2-425 (449)
56 TIGR01975 isoAsp_dipep isoaspa 100.0 2.2E-30 4.7E-35 273.8 35.0 359 21-470 2-384 (389)
57 PRK08393 N-ethylammeline chlor 100.0 3.5E-30 7.6E-35 278.0 37.1 368 19-470 1-406 (424)
58 TIGR01792 urease_alph urease, 100.0 2E-31 4.4E-36 287.9 25.2 360 18-470 65-463 (567)
59 PRK12393 amidohydrolase; Provi 100.0 1.1E-29 2.3E-34 276.5 35.8 379 19-471 2-436 (457)
60 TIGR03314 Se_ssnA putative sel 100.0 7.6E-30 1.6E-34 276.4 34.4 377 21-472 1-422 (441)
61 PRK06038 N-ethylammeline chlor 100.0 2.8E-29 6.1E-34 271.3 36.5 370 19-471 2-408 (430)
62 PRK07583 cytosine deaminase-li 100.0 6.9E-30 1.5E-34 276.6 31.6 363 17-466 9-425 (438)
63 TIGR01178 ade adenine deaminas 100.0 2.2E-29 4.7E-34 276.7 34.0 325 20-469 1-342 (552)
64 PRK09228 guanine deaminase; Pr 100.0 2.8E-29 6E-34 271.2 33.9 361 36-465 31-432 (433)
65 PRK11170 nagA N-acetylglucosam 100.0 2.1E-30 4.5E-35 273.9 23.6 363 21-464 2-381 (382)
66 cd01293 Bact_CD Bacterial cyto 100.0 2.3E-29 5.1E-34 269.5 30.6 355 22-462 1-398 (398)
67 PRK09356 imidazolonepropionase 100.0 4.9E-29 1.1E-33 268.0 32.2 346 18-464 2-406 (406)
68 PLN02303 urease 100.0 1.4E-29 3.1E-34 279.0 27.7 361 18-469 333-732 (837)
69 TIGR02967 guan_deamin guanine 100.0 3.3E-29 7.2E-34 268.8 29.5 355 36-459 6-401 (401)
70 TIGR00221 nagA N-acetylglucosa 100.0 1.6E-29 3.4E-34 266.6 26.4 352 19-424 3-369 (380)
71 PRK05985 cytosine deaminase; P 100.0 7.8E-29 1.7E-33 265.0 32.0 350 18-466 1-391 (391)
72 COG1820 NagA N-acetylglucosami 100.0 1.7E-29 3.7E-34 257.4 23.1 365 21-464 2-380 (380)
73 PRK09237 dihydroorotase; Provi 100.0 3.1E-28 6.7E-33 259.4 31.1 345 21-466 1-371 (380)
74 COG1228 HutI Imidazolonepropio 100.0 7.1E-29 1.5E-33 262.6 25.8 349 18-467 9-405 (406)
75 PRK07572 cytosine deaminase; V 100.0 7.4E-28 1.6E-32 260.0 33.6 360 18-466 1-404 (426)
76 PRK09230 cytosine deaminase; P 100.0 3.6E-27 7.8E-32 253.9 34.9 361 18-465 3-407 (426)
77 PRK07213 chlorohydrolase; Prov 100.0 2.8E-27 6E-32 251.3 32.4 339 21-461 2-375 (375)
78 PRK10027 cryptic adenine deami 100.0 5.7E-27 1.2E-31 257.7 34.7 331 17-469 28-370 (588)
79 COG1574 Predicted metal-depend 100.0 1.2E-27 2.5E-32 258.9 27.6 365 18-465 4-534 (535)
80 cd01303 GDEase Guanine deamina 100.0 5.9E-27 1.3E-31 253.0 32.8 355 36-459 26-429 (429)
81 TIGR02022 hutF formiminoglutam 100.0 2.4E-27 5.1E-32 257.8 29.7 369 21-472 4-440 (455)
82 PRK09229 N-formimino-L-glutama 100.0 2.4E-27 5.3E-32 258.1 28.5 367 19-469 3-437 (456)
83 PLN02599 dihydroorotase 100.0 6.8E-28 1.5E-32 251.6 22.6 295 67-410 22-329 (364)
84 cd00854 NagA N-acetylglucosami 100.0 1.5E-27 3.3E-32 253.0 24.7 334 21-424 1-364 (374)
85 PRK14085 imidazolonepropionase 100.0 3.5E-26 7.5E-31 243.7 34.0 316 19-425 1-364 (382)
86 PRK08418 chlorohydrolase; Prov 100.0 6.3E-27 1.4E-31 250.8 27.7 362 21-462 2-407 (408)
87 COG0402 SsnA Cytosine deaminas 100.0 7.5E-27 1.6E-31 251.8 28.5 377 19-469 2-414 (421)
88 cd01313 Met_dep_hydrolase_E Me 100.0 4.4E-26 9.6E-31 245.4 31.4 348 31-460 4-418 (418)
89 cd01296 Imidazolone-5PH Imidaz 100.0 3.4E-26 7.4E-31 243.1 28.0 301 39-426 1-352 (371)
90 TIGR01224 hutI imidazoloneprop 99.9 1.3E-25 2.7E-30 239.2 30.4 325 35-461 2-377 (377)
91 TIGR03583 EF_0837 probable ami 99.9 3.6E-25 7.8E-30 234.6 33.7 336 19-462 1-364 (365)
92 cd01304 FMDH_A Formylmethanofu 99.9 2.7E-25 5.8E-30 238.0 32.7 405 23-483 1-515 (541)
93 TIGR03121 one_C_dehyd_A formyl 99.9 1.3E-25 2.9E-30 241.5 28.4 406 21-483 2-517 (556)
94 cd01307 Met_dep_hydrolase_B Me 99.9 5.5E-26 1.2E-30 238.2 24.4 295 38-425 1-317 (338)
95 COG1001 AdeC Adenine deaminase 99.9 2.6E-25 5.6E-30 235.7 29.5 329 17-467 22-362 (584)
96 cd01299 Met_dep_hydrolase_A Me 99.9 1.2E-25 2.5E-30 236.3 24.2 294 59-425 1-335 (342)
97 PRK06846 putative deaminase; V 99.9 1.2E-24 2.5E-29 234.1 31.2 335 33-465 28-406 (410)
98 cd01312 Met_dep_hydrolase_D Me 99.9 8.6E-25 1.9E-29 232.1 27.8 342 44-460 1-381 (381)
99 cd01309 Met_dep_hydrolase_C Me 99.9 7.3E-24 1.6E-28 223.6 27.4 316 43-463 1-359 (359)
100 COG3964 Predicted amidohydrola 99.9 2.2E-24 4.7E-29 208.8 20.7 313 18-425 3-340 (386)
101 COG3454 Metal-dependent hydrol 99.9 3.8E-23 8.2E-28 202.5 21.2 345 22-463 2-377 (377)
102 KOG3968|consensus 99.9 1.1E-22 2.4E-27 206.4 19.8 354 36-464 27-438 (439)
103 cd01300 YtcJ_like YtcJ_like me 99.9 8.1E-23 1.8E-27 224.4 20.2 190 178-420 290-479 (479)
104 COG3653 N-acyl-D-aspartate/D-g 99.9 1E-20 2.2E-25 190.9 29.7 99 382-485 472-573 (579)
105 cd01295 AdeC Adenine deaminase 99.9 4.7E-21 1E-25 206.6 28.8 283 63-466 1-293 (422)
106 COG0804 UreC Urea amidohydrola 99.9 3.2E-21 7E-26 192.9 21.5 350 18-465 66-458 (568)
107 PF13147 Amidohydro_4: Amidohy 99.8 4.5E-20 9.7E-25 188.1 18.8 300 63-419 1-304 (304)
108 COG1229 FwdA Formylmethanofura 99.8 1.9E-19 4.1E-24 180.6 17.4 88 382-479 436-524 (575)
109 cd01306 PhnM PhnM is believed 99.8 1.8E-17 4E-22 170.6 23.1 260 70-424 1-312 (325)
110 PF01979 Amidohydro_1: Amidohy 99.8 8.1E-19 1.8E-23 183.1 12.2 294 68-422 1-333 (333)
111 KOG3892|consensus 99.7 1.2E-16 2.6E-21 152.8 14.5 374 21-465 14-405 (407)
112 PF13594 Amidohydro_5: Amidohy 99.5 1.7E-14 3.7E-19 114.3 7.2 67 39-108 1-68 (68)
113 cd01305 archeal_chlorohydrolas 99.4 3.6E-12 7.7E-17 129.0 14.7 234 68-400 1-263 (263)
114 PRK06886 hypothetical protein; 99.4 9.3E-11 2E-15 121.4 24.8 266 72-404 21-328 (329)
115 cd01292 metallo-dependent_hydr 99.4 2.3E-11 5E-16 122.3 18.1 251 73-400 1-275 (275)
116 PF07969 Amidohydro_3: Amidohy 99.3 1.5E-11 3.3E-16 132.1 16.2 182 174-420 216-404 (404)
117 cd01310 TatD_DNAse TatD like p 98.7 1.6E-06 3.4E-11 86.8 19.6 243 73-402 1-251 (251)
118 TIGR00010 hydrolase, TatD fami 98.6 3.1E-06 6.7E-11 84.7 18.6 125 73-205 1-130 (252)
119 COG0418 PyrC Dihydroorotase [N 98.5 1.2E-05 2.7E-10 79.5 19.0 212 152-404 83-304 (344)
120 PRK10812 putative DNAse; Provi 98.4 2.5E-05 5.3E-10 79.0 20.0 247 73-404 3-257 (265)
121 cd00530 PTE Phosphotriesterase 98.4 2.6E-05 5.7E-10 80.1 20.1 261 72-401 1-293 (293)
122 COG0084 TatD Mg-dependent DNas 98.3 0.00011 2.5E-09 73.2 19.9 125 73-205 3-134 (256)
123 KOG2902|consensus 98.2 7.8E-05 1.7E-09 71.4 16.9 284 68-404 5-301 (344)
124 PRK10425 DNase TatD; Provision 98.2 0.00023 5E-09 71.6 20.5 125 73-205 1-130 (258)
125 TIGR01430 aden_deam adenosine 98.1 0.00026 5.5E-09 74.0 20.5 56 326-403 257-312 (324)
126 PRK11449 putative deoxyribonuc 98.1 0.00046 1E-08 69.5 20.9 127 71-205 3-136 (258)
127 PRK09875 putative hydrolase; P 98.0 0.00067 1.5E-08 69.3 20.2 256 72-402 7-292 (292)
128 PF12890 DHOase: Dihydro-orota 98.0 1.3E-05 2.7E-10 70.1 6.2 79 174-263 57-141 (142)
129 cd01320 ADA Adenosine deaminas 97.9 0.0016 3.5E-08 68.0 21.5 26 180-205 170-195 (325)
130 PF01026 TatD_DNase: TatD rela 97.9 0.00087 1.9E-08 67.5 18.2 125 74-205 1-133 (255)
131 COG1099 Predicted metal-depend 97.6 0.00076 1.7E-08 64.3 11.7 124 73-205 2-136 (254)
132 PRK09358 adenosine deaminase; 97.6 0.0081 1.8E-07 63.1 20.3 27 179-205 178-204 (340)
133 COG1735 Php Predicted metal-de 97.4 0.017 3.7E-07 58.1 18.4 242 97-403 54-314 (316)
134 PF02126 PTE: Phosphotriestera 97.2 0.0059 1.3E-07 62.9 13.5 266 72-401 7-307 (308)
135 PF04909 Amidohydro_2: Amidohy 97.1 0.0097 2.1E-07 59.8 13.6 185 148-403 82-273 (273)
136 COG2159 Predicted metal-depend 96.9 0.26 5.5E-06 50.7 22.5 176 150-405 112-292 (293)
137 PF00449 Urease_alpha: Urease 96.3 0.0061 1.3E-07 51.9 4.5 35 18-52 65-99 (121)
138 PF07908 D-aminoacyl_C: D-amin 96.2 0.0044 9.6E-08 45.1 3.0 29 452-481 20-48 (48)
139 cd01311 PDC_hydrolase 2-pyrone 96.1 0.5 1.1E-05 47.6 18.6 50 153-205 83-132 (263)
140 cd01321 ADGF Adenosine deamina 96.1 0.76 1.7E-05 48.3 20.2 25 181-205 177-203 (345)
141 COG1831 Predicted metal-depend 96.0 0.26 5.7E-06 48.7 15.0 71 321-404 213-283 (285)
142 PTZ00124 adenosine deaminase; 94.5 3.4 7.3E-05 43.8 18.8 53 325-399 293-345 (362)
143 cd00443 ADA_AMPD Adenosine/AMP 93.4 3.6 7.8E-05 42.5 16.4 25 181-205 151-176 (305)
144 COG4464 CapC Capsular polysacc 92.9 0.84 1.8E-05 43.8 9.6 40 73-112 1-41 (254)
145 PF00962 A_deaminase: Adenosin 91.9 0.72 1.6E-05 48.1 8.9 54 149-205 146-202 (331)
146 COG3618 Predicted metal-depend 89.3 26 0.00057 35.4 19.9 23 183-205 124-146 (279)
147 PRK08609 hypothetical protein; 88.7 9.6 0.00021 43.0 14.8 32 74-109 336-367 (570)
148 PF07969 Amidohydro_3: Amidohy 85.4 0.26 5.7E-06 52.8 0.1 27 240-267 227-253 (404)
149 PTZ00372 endonuclease 4-like p 84.3 63 0.0014 34.8 17.3 118 119-261 114-241 (413)
150 KOG1097|consensus 82.9 33 0.00072 36.4 14.1 38 181-218 225-262 (399)
151 PRK08392 hypothetical protein; 82.5 40 0.00087 32.7 14.1 35 74-112 1-37 (215)
152 smart00518 AP2Ec AP endonuclea 82.2 39 0.00084 33.9 14.4 87 155-260 15-106 (273)
153 COG1816 Add Adenosine deaminas 80.6 24 0.00053 37.0 12.2 26 180-205 182-207 (345)
154 PRK01060 endonuclease IV; Prov 73.6 40 0.00087 34.0 11.6 89 153-260 14-111 (281)
155 PRK12331 oxaloacetate decarbox 69.9 1.4E+02 0.0031 32.5 15.3 124 95-223 100-225 (448)
156 COG5016 Pyruvate/oxaloacetate 69.5 1.2E+02 0.0025 32.5 13.5 167 87-264 24-213 (472)
157 PRK12330 oxaloacetate decarbox 69.2 1.6E+02 0.0035 32.6 15.4 126 93-225 99-230 (499)
158 cd07937 DRE_TIM_PC_TC_5S Pyruv 68.1 1.4E+02 0.0029 30.3 13.9 123 97-225 97-222 (275)
159 PRK14042 pyruvate carboxylase 67.0 2.1E+02 0.0045 32.6 16.1 124 93-223 98-225 (596)
160 PRK07328 histidinol-phosphatas 66.3 1.5E+02 0.0032 29.8 18.0 34 73-109 3-36 (269)
161 cd00950 DHDPS Dihydrodipicolin 65.6 66 0.0014 32.6 11.2 98 161-260 31-135 (284)
162 PRK12581 oxaloacetate decarbox 65.3 2.2E+02 0.0047 31.3 15.6 130 90-225 103-236 (468)
163 COG5016 Pyruvate/oxaloacetate 64.8 1.9E+02 0.0042 30.9 14.0 127 93-225 100-229 (472)
164 PRK03170 dihydrodipicolinate s 62.3 89 0.0019 31.9 11.4 98 161-260 32-136 (292)
165 cd00408 DHDPS-like Dihydrodipi 62.0 97 0.0021 31.3 11.6 98 162-261 29-133 (281)
166 TIGR00587 nfo apurinic endonuc 61.6 1.8E+02 0.004 29.2 14.6 98 140-261 4-111 (274)
167 PRK14041 oxaloacetate decarbox 59.1 2.1E+02 0.0047 31.4 14.1 128 90-223 93-224 (467)
168 TIGR01431 adm_rel adenosine de 58.3 2.9E+02 0.0063 30.5 15.6 21 326-346 396-416 (479)
169 PRK07945 hypothetical protein; 57.2 2.5E+02 0.0054 29.4 15.9 33 73-109 97-129 (335)
170 TIGR00674 dapA dihydrodipicoli 56.0 1.4E+02 0.0031 30.3 11.6 97 162-260 30-133 (285)
171 cd00952 CHBPH_aldolase Trans-o 55.9 1.1E+02 0.0023 31.7 10.8 98 162-261 40-145 (309)
172 TIGR01856 hisJ_fam histidinol 53.9 2.4E+02 0.0051 28.1 18.2 33 74-109 1-33 (253)
173 PRK13352 thiamine biosynthesis 53.9 3.1E+02 0.0068 29.5 16.5 50 64-114 35-100 (431)
174 cd00951 KDGDH 5-dehydro-4-deox 53.6 1.5E+02 0.0033 30.2 11.4 107 161-271 31-146 (289)
175 KOG3020|consensus 53.4 2.7E+02 0.0059 28.6 14.4 134 65-205 10-157 (296)
176 PRK11858 aksA trans-homoaconit 51.7 3.3E+02 0.0071 29.0 15.4 107 88-205 23-138 (378)
177 PRK09195 gatY tagatose-bisphos 51.5 2.5E+02 0.0053 28.7 12.2 66 152-221 156-226 (284)
178 cd00019 AP2Ec AP endonuclease 49.4 2.9E+02 0.0062 27.7 13.8 93 153-261 12-108 (279)
179 PRK12738 kbaY tagatose-bisphos 49.1 2.9E+02 0.0063 28.3 12.3 65 153-221 157-226 (286)
180 PF07071 DUF1341: Protein of u 48.5 63 0.0014 31.0 6.7 43 154-199 138-180 (218)
181 COG0821 gcpE 1-hydroxy-2-methy 47.3 3.5E+02 0.0077 28.2 16.1 166 97-301 42-207 (361)
182 TIGR03249 KdgD 5-dehydro-4-deo 47.3 2.2E+02 0.0047 29.1 11.4 110 161-272 36-152 (296)
183 COG0826 Collagenase and relate 46.5 99 0.0022 32.6 8.7 84 179-274 45-136 (347)
184 COG1387 HIS2 Histidinol phosph 46.5 3E+02 0.0065 27.2 14.0 33 73-109 2-34 (237)
185 TIGR01108 oadA oxaloacetate de 46.4 4.9E+02 0.011 29.6 14.8 125 94-224 94-221 (582)
186 TIGR03581 EF_0839 conserved hy 46.2 98 0.0021 30.1 7.7 42 154-198 138-179 (236)
187 PRK04147 N-acetylneuraminate l 46.0 2.2E+02 0.0047 29.0 11.1 96 163-260 37-139 (293)
188 TIGR01235 pyruv_carbox pyruvat 45.3 5.2E+02 0.011 32.0 15.7 133 89-224 622-761 (1143)
189 PRK03892 ribonuclease P protei 44.9 3E+02 0.0065 26.7 14.5 77 120-206 16-92 (216)
190 PRK09282 pyruvate carboxylase 44.5 3.8E+02 0.0081 30.6 13.5 123 95-223 100-225 (592)
191 PRK14040 oxaloacetate decarbox 44.0 5.4E+02 0.012 29.3 20.7 160 87-256 23-203 (593)
192 PRK03620 5-dehydro-4-deoxygluc 43.7 2.5E+02 0.0055 28.8 11.2 109 162-272 39-154 (303)
193 TIGR02313 HpaI-NOT-DapA 2,4-di 43.7 2.6E+02 0.0056 28.6 11.2 110 161-272 31-152 (294)
194 PRK07535 methyltetrahydrofolat 43.4 2.8E+02 0.0061 27.9 11.2 57 333-402 189-245 (261)
195 TIGR00683 nanA N-acetylneurami 42.5 2.8E+02 0.006 28.3 11.2 97 162-260 32-137 (290)
196 PRK11858 aksA trans-homoaconit 42.4 2.7E+02 0.0058 29.7 11.5 78 145-225 139-218 (378)
197 cd00954 NAL N-Acetylneuraminic 42.3 3E+02 0.0065 27.9 11.5 97 162-260 32-137 (288)
198 PRK08508 biotin synthase; Prov 42.2 3.8E+02 0.0082 27.1 12.4 73 152-225 45-117 (279)
199 TIGR01858 tag_bisphos_ald clas 42.1 3.9E+02 0.0085 27.2 12.0 65 153-221 155-224 (282)
200 PRK09248 putative hydrolase; V 42.0 3.5E+02 0.0076 26.6 14.2 34 73-109 4-37 (246)
201 TIGR03822 AblA_like_2 lysine-2 42.0 3.4E+02 0.0074 28.1 11.9 80 179-259 149-235 (321)
202 TIGR03217 4OH_2_O_val_ald 4-hy 41.7 4.3E+02 0.0094 27.6 13.4 103 97-206 93-198 (333)
203 PRK08195 4-hyroxy-2-oxovalerat 41.3 4.4E+02 0.0096 27.6 13.8 119 97-222 94-216 (337)
204 cd07944 DRE_TIM_HOA_like 4-hyd 41.3 3.5E+02 0.0075 27.2 11.6 103 97-206 88-193 (266)
205 PRK07709 fructose-bisphosphate 41.1 4.1E+02 0.0089 27.2 12.8 67 152-222 157-228 (285)
206 cd00953 KDG_aldolase KDG (2-ke 41.0 1.8E+02 0.004 29.4 9.6 105 86-202 15-127 (279)
207 PRK08610 fructose-bisphosphate 39.7 4.3E+02 0.0094 27.0 12.6 66 152-221 157-227 (286)
208 PRK14042 pyruvate carboxylase 39.4 6.3E+02 0.014 28.8 20.1 160 87-256 22-202 (596)
209 cd07943 DRE_TIM_HOA 4-hydroxy- 39.1 3.5E+02 0.0076 27.0 11.3 103 97-206 91-195 (263)
210 COG0329 DapA Dihydrodipicolina 38.5 2.4E+02 0.0051 29.0 10.0 105 155-261 29-140 (299)
211 PF00701 DHDPS: Dihydrodipicol 38.5 2E+02 0.0044 29.1 9.6 97 162-260 33-136 (289)
212 PF03932 CutC: CutC family; I 38.4 3.7E+02 0.0081 25.9 12.5 126 95-223 11-143 (201)
213 PRK12999 pyruvate carboxylase; 37.9 6.2E+02 0.014 31.4 14.8 183 89-274 624-813 (1146)
214 TIGR00190 thiC thiamine biosyn 37.6 5.5E+02 0.012 27.6 14.8 21 94-114 80-100 (423)
215 PF02811 PHP: PHP domain; Int 37.5 25 0.00054 32.2 2.4 33 74-109 1-34 (175)
216 TIGR02660 nifV_homocitr homoci 37.4 4.2E+02 0.0092 28.0 12.0 78 145-225 136-215 (365)
217 TIGR01108 oadA oxaloacetate de 36.7 6.8E+02 0.015 28.4 20.6 160 87-256 17-197 (582)
218 PRK09282 pyruvate carboxylase 35.7 7.1E+02 0.015 28.4 18.3 179 87-280 22-223 (592)
219 PRK12737 gatY tagatose-bisphos 34.3 5.2E+02 0.011 26.4 12.3 65 153-221 157-226 (284)
220 cd07948 DRE_TIM_HCS Saccharomy 33.8 5E+02 0.011 26.0 11.8 54 150-206 140-194 (262)
221 PRK07998 gatY putative fructos 33.2 4.4E+02 0.0096 26.9 10.7 67 152-222 154-224 (283)
222 PRK14040 oxaloacetate decarbox 32.7 7.9E+02 0.017 28.0 15.4 124 94-223 100-226 (593)
223 PF01791 DeoC: DeoC/LacD famil 32.5 2.6E+02 0.0055 27.4 8.9 104 92-203 20-132 (236)
224 PF05853 DUF849: Prokaryotic p 32.4 5.4E+02 0.012 26.0 11.4 107 145-254 144-260 (272)
225 TIGR01235 pyruv_carbox pyruvat 32.4 9E+02 0.019 30.0 14.9 149 118-280 589-758 (1143)
226 PRK12738 kbaY tagatose-bisphos 32.4 5.1E+02 0.011 26.5 11.0 111 148-260 26-139 (286)
227 TIGR02109 PQQ_syn_pqqE coenzym 32.3 4.9E+02 0.011 27.2 11.6 37 238-274 132-172 (358)
228 cd00947 TBP_aldolase_IIB Tagat 31.7 4.6E+02 0.01 26.6 10.5 66 153-222 150-221 (276)
229 PRK06801 hypothetical protein; 31.6 5.3E+02 0.011 26.4 11.0 105 148-254 26-131 (286)
230 TIGR01858 tag_bisphos_ald clas 31.5 5.3E+02 0.011 26.3 11.0 111 148-260 24-137 (282)
231 PRK15447 putative protease; Pr 31.5 4E+02 0.0087 27.3 10.4 55 146-202 10-67 (301)
232 COG0075 Serine-pyruvate aminot 31.4 5.4E+02 0.012 27.5 11.4 54 152-207 91-144 (383)
233 cd00953 KDG_aldolase KDG (2-ke 30.5 5.8E+02 0.013 25.7 11.5 96 161-260 30-130 (279)
234 PRK12737 gatY tagatose-bisphos 30.4 5.5E+02 0.012 26.2 10.9 110 149-260 27-139 (284)
235 PRK08444 hypothetical protein; 29.5 6.7E+02 0.015 26.4 11.8 120 152-274 85-230 (353)
236 TIGR00167 cbbA ketose-bisphosp 28.7 6.3E+02 0.014 25.8 11.0 65 153-221 160-230 (288)
237 PF02679 ComA: (2R)-phospho-3- 28.3 2.7E+02 0.0059 27.7 8.0 11 102-112 11-21 (244)
238 PF00682 HMGL-like: HMGL-like 28.3 5.6E+02 0.012 24.8 11.4 115 88-206 64-191 (237)
239 cd07939 DRE_TIM_NifV Streptomy 28.2 6E+02 0.013 25.2 11.3 57 147-206 135-192 (259)
240 PRK06361 hypothetical protein; 28.1 5.3E+02 0.012 24.6 19.0 55 327-403 155-210 (212)
241 PRK15108 biotin synthase; Prov 27.8 7.3E+02 0.016 26.0 13.2 60 161-222 89-148 (345)
242 KOG2550|consensus 27.7 76 0.0017 33.8 4.1 68 62-132 30-112 (503)
243 PLN02417 dihydrodipicolinate s 27.4 6.5E+02 0.014 25.4 11.1 96 162-261 33-135 (280)
244 PRK06552 keto-hydroxyglutarate 27.1 5.7E+02 0.012 24.8 10.0 98 87-205 21-118 (213)
245 PRK09195 gatY tagatose-bisphos 26.9 6.1E+02 0.013 25.9 10.5 78 182-260 59-139 (284)
246 PF01261 AP_endonuc_2: Xylose 26.2 5E+02 0.011 24.0 9.5 89 159-260 3-93 (213)
247 cd00952 CHBPH_aldolase Trans-o 25.6 6.7E+02 0.015 25.7 10.9 109 86-202 24-141 (309)
248 TIGR03551 F420_cofH 7,8-dideme 25.2 7.9E+02 0.017 25.6 11.6 102 151-255 74-196 (343)
249 PRK07998 gatY putative fructos 24.7 6.3E+02 0.014 25.8 10.1 79 181-260 58-139 (283)
250 PF01261 AP_endonuc_2: Xylose 24.6 5.6E+02 0.012 23.7 11.2 52 151-202 27-91 (213)
251 TIGR01496 DHPS dihydropteroate 24.3 7.2E+02 0.016 24.8 17.2 98 150-260 23-127 (257)
252 PF15585 Imm46: Immunity prote 24.3 50 0.0011 29.3 1.8 51 400-469 70-120 (129)
253 PRK06806 fructose-bisphosphate 23.9 7.8E+02 0.017 25.0 11.0 111 148-260 26-139 (281)
254 PRK05301 pyrroloquinoline quin 23.3 8.8E+02 0.019 25.5 13.7 24 238-261 141-164 (378)
255 PRK12857 fructose-1,6-bisphosp 23.0 8.2E+02 0.018 25.0 12.1 124 94-221 87-226 (284)
256 PRK07315 fructose-bisphosphate 22.5 8E+02 0.017 25.1 10.6 71 183-255 61-134 (293)
257 PRK06015 keto-hydroxyglutarate 22.5 6.8E+02 0.015 24.1 9.4 95 87-205 12-106 (201)
258 PRK13111 trpA tryptophan synth 22.3 5.3E+02 0.012 25.8 9.1 41 154-201 107-147 (258)
259 TIGR02090 LEU1_arch isopropylm 21.9 6.3E+02 0.014 26.7 10.0 107 88-205 19-134 (363)
260 cd07937 DRE_TIM_PC_TC_5S Pyruv 21.6 8.4E+02 0.018 24.5 18.8 157 87-256 17-197 (275)
261 KOG4549|consensus 21.4 1.5E+02 0.0033 26.4 4.1 23 58-81 6-28 (144)
262 cd07938 DRE_TIM_HMGL 3-hydroxy 21.4 8.5E+02 0.018 24.5 11.6 56 148-206 146-203 (274)
263 PF01964 ThiC: ThiC family; I 21.4 5.2E+02 0.011 27.8 8.8 24 237-260 201-224 (420)
264 COG2100 Predicted Fe-S oxidore 21.3 8.8E+02 0.019 25.4 10.1 40 154-196 245-284 (414)
265 PRK06256 biotin synthase; Vali 20.7 6.7E+02 0.015 25.9 9.9 73 151-225 95-167 (336)
266 cd00947 TBP_aldolase_IIB Tagat 20.5 9E+02 0.02 24.5 10.9 79 181-260 53-134 (276)
267 cd07945 DRE_TIM_CMS Leptospira 20.4 9E+02 0.02 24.5 11.7 110 94-206 77-201 (280)
268 PRK00912 ribonuclease P protei 20.4 2.2E+02 0.0047 28.0 5.8 55 327-403 161-216 (237)
269 cd01301 rDP_like renal dipepti 20.0 9.7E+02 0.021 24.7 12.1 52 333-398 255-307 (309)
No 1
>KOG2584|consensus
Probab=100.00 E-value=1e-132 Score=996.25 Aligned_cols=515 Identities=56% Similarity=0.933 Sum_probs=501.8
Q ss_pred cccccccccEEEEccEEEcCCCceeeEEEEECCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCcccccCCCCChh
Q psy6858 12 IHLQSSQNRLLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELELMGATSVD 91 (592)
Q Consensus 12 ~~~~~~~~~llIkng~Iv~~d~~~~~dV~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~~~~~d 91 (592)
.+.+..+.+++||||+|||+|.++.+|||++||+|.+|++++.++++.++|||+|++|+||+||+|||+++|+++..+.|
T Consensus 7 ~~~~v~s~rllikgg~vvN~d~~~~aDV~vedGiI~~vg~~l~ipgg~~~ida~g~~ViPGgID~Hthlq~p~~G~ts~D 86 (522)
T KOG2584|consen 7 TSPHVASNRLLIKGGRVVNDDQSFKADVYVEDGIIKEVGENLIIPGGVKVIDATGKMVIPGGIDPHTHLQMPFMGMTSVD 86 (522)
T ss_pred ccccccccceeeeCCEEEccCCceeeeEEeccCEEEEecccEEcCCCceEEecCCcEEecCccCccceeccccCCccchh
Confidence 34466788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccccccCCChHHHHHHHHHHHHcCCcEEEEE
Q psy6858 92 DFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTF 171 (592)
Q Consensus 92 ~~~~~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~Gv~~~k~~ 171 (592)
||++|+++|++||||||+||+.|..+.+++++|++|+.+++++.||||++|+++++|.+++.++|+.+++++|+|+|++|
T Consensus 87 dF~~GTkAAlaGGtTmiID~vlp~~~~slv~afe~wr~~Ad~k~cCDyglhv~It~W~~~v~eem~~l~~ekGvnsF~~f 166 (522)
T KOG2584|consen 87 DFFQGTKAALAGGTTMIIDFVLPDKGTSLVEAFEKWREWADPKVCCDYGLHVGITWWSPSVKEEMEILVKEKGVNSFKFF 166 (522)
T ss_pred hhhcccHHHhcCCceEEEEEecCCCCchHHHHHHHHHhhcCCceeeeeeeeEeeeecCcchHHHHHHHhhhcCcceEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccC
Q psy6858 172 MAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVD 251 (592)
Q Consensus 172 ~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~ 251 (592)
|+|++.++++|++|++.++.|+++|+++++||||++++.+.+++++++|+++||||.+|||+++|+||++|+|++|++.+
T Consensus 167 mayk~~~~v~d~~lye~l~~~~~lgala~vHAEngd~iae~q~~~l~~gitgPEgh~lSRPee~EaEA~~rai~ia~~~n 246 (522)
T KOG2584|consen 167 MAYKDLYMVRDSELYEALKVCAELGALAMVHAENGDAIAEGQQRLLELGITGPEGHELSRPEELEAEATNRAITIARQAN 246 (522)
T ss_pred eeeccccccCHHHHHHHHHHHhhcchhheehhhcchhhhhhhhHHHHcCCcCcccccccCchhhhHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCc-ccccccceecCCCCCCCCCHHHHHHHH
Q psy6858 252 CPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCT-WHDQAAHVLSPPLRPDETTPTHLLTLL 330 (592)
Q Consensus 252 ~pl~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~-~~~~~~~~~~pplr~~~~~~~~l~~~l 330 (592)
||+|++|+++..+++.|.++|++ |. .|++|++.++|++|+.+||.+ |.++++|+++||+|+++++++.||++|
T Consensus 247 cPlyvvhVmsksaa~~Ia~aRk~----g~--~v~gepita~l~~dg~hy~~~~w~~Aa~~v~sPPlr~d~~t~~~L~~lL 320 (522)
T KOG2584|consen 247 CPLYVVHVMSKSAADAIALARKK----GR--VVFGEPITASLGTDGSHYWSKDWDHAAAFVTSPPLRPDPTTPDGLMDLL 320 (522)
T ss_pred CCcceEEEeehhHHHHHHHHHhc----Cc--eeecccchhhhcccchhhccCChhhcceeeeCCCCCCCCCCHHHHHHHH
Confidence 99999999999999999999999 99 999999999999999999999 999999999999999999999999999
Q ss_pred hcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHHHcCCCCCCccc
Q psy6858 331 NENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVI 410 (592)
Q Consensus 331 ~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I 410 (592)
+.|+++.+|||||+|+..||++||++|++||+|++|+|+||+++|+++|+.|+||+++||+++|+|+||+||+||+||+|
T Consensus 321 a~g~L~~tgSdhctf~~~qKalgKddFt~ip~GvnGvedrMsviwekgv~~G~md~~~fVavtstnaAkifnlYprKGrI 400 (522)
T KOG2584|consen 321 AEGDLQLTGSDHCTFTTEQKALGKDDFTKIPNGVNGVEDRMSVIWEKGVHSGKMDENRFVAVTSTNAAKIFNLYPRKGRI 400 (522)
T ss_pred hcCccceeecCCCCCCHHHHhhccCccccCCCccccccccceeeeehhcccCccCcccEEEEecccchhheeccCcCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEEECCEEEEECCeeeecCCCceeecCCCCCCccccC
Q psy6858 411 AEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQGNYLPTHTNPPFVYEG 490 (592)
Q Consensus 411 ~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv~GkvV~~~g~l~~~~g~g~~~~~~~~~~~~~~~ 490 (592)
++|+|||||||||+..++||+++|+++.+||+||||+|+|.|+.||++||+||+||++.+++|.|||||+++||+|+|++
T Consensus 401 avGsDADiVIwdp~at~tIS~~th~~~~d~NifEGm~~~G~plvtIsrGriv~eng~~~v~~g~G~fip~~~f~~~vy~~ 480 (522)
T KOG2584|consen 401 AVGSDADIVIWDPNATKTISAKTHHSANDFNIFEGMTVHGVPLVTISRGRVVYENGNLVVTEGSGRFIPRSPFPDYVYKR 480 (522)
T ss_pred cccCCCcEEEECCCcceEeccccccccccceeecCcEecceeEEEEeCCeEEEecCcEEEecCCCceeeCCCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccccCcccchhccccccCCCCCCCCccCCCCCCCcCCCCCccCCCCCCCccCC
Q psy6858 491 QTPEVDIDHKENHEVIEEIREKLHGLTPNNNHKISAPRSPSYSSTSSVYGDADYGHNQIH 550 (592)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (592)
+++|++.. ++++|+|. ||+|++ . +++. +++.++++ ++++++|
T Consensus 481 i~~r~~~~---~~~~v~r~---~y~~~~------~---~~~~--~~~~~~~~-~~~~~~p 522 (522)
T KOG2584|consen 481 IKARDKTA---ELRGVPRG---PYDGPV------A---EVTV--TPKIGTPA-PSAATSP 522 (522)
T ss_pred HHhhhccC---Cccccccc---ccCCcc------e---eeee--ccccCCCC-cccccCC
Confidence 99999999 89999999 999999 6 5555 77888877 5554443
No 2
>PLN02942 dihydropyrimidinase
Probab=100.00 E-value=4.2e-68 Score=580.75 Aligned_cols=457 Identities=45% Similarity=0.789 Sum_probs=411.3
Q ss_pred cccEEEEccEEEcCCCceeeEEEEECCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCcccccCCCCChhhHHHHH
Q psy6858 18 QNRLLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELELMGATSVDDFYHGT 97 (592)
Q Consensus 18 ~~~llIkng~Iv~~d~~~~~dV~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~~~~~d~~~~~~ 97 (592)
+.+++|+|++|++.+....++|+|+||+|++|++....+.+.++||++|++|+|||||+|+|+.+++++....+++++++
T Consensus 4 ~~~lli~~~~v~~~~~~~~~~i~I~~g~I~~i~~~~~~~~~~~~iD~~g~~v~PG~ID~H~H~~~~~~~~~~~ed~~s~s 83 (486)
T PLN02942 4 STKILIKGGTVVNAHHQELADVYVEDGIIVAVAPNLKVPDDVRVIDATGKFVMPGGIDPHTHLAMPFMGTETIDDFFSGQ 83 (486)
T ss_pred CCcEEEECcEEEcCCCCeEeEEEEECCEEEEEcCCCCCCCCCeEEECCCCEEecCEeeeeeccCcccCCCcccchHHHHH
Confidence 56899999999997776778999999999999986543346789999999999999999999998876667789999999
Q ss_pred HHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccccccCCChHHHHHHHHHHHHcCCcEEEEEEeeCCC
Q psy6858 98 KAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGL 177 (592)
Q Consensus 98 ~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~Gv~~~k~~~~~~~~ 177 (592)
++|+++||||+.|+..+. .....+.++.....+. +..++|+++...+.+.....+++.++++..|+.+|++|+++++.
T Consensus 84 ~aAl~gGvTTv~D~~~~~-~~~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~e~~~l~~~~gv~~~k~~~~~~~~ 161 (486)
T PLN02942 84 AAALAGGTTMHIDFVIPV-NGNLLAGYEAYEKKAE-KSCMDYGFHMAITKWDDTVSRDMETLVKEKGINSFKFFMAYKGS 161 (486)
T ss_pred HHHHcCCCeEEEeCCCCC-CCCHHHHHHHHHHHHh-hcCCCEEEEEEecCCcHhHHHHHHHHHHhCCCceEEEEEecCCC
Confidence 999999999999996554 3344666666666655 45789998877766665556788888777799999999998877
Q ss_pred cCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCEEEE
Q psy6858 178 YMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVV 257 (592)
Q Consensus 178 ~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~i~ 257 (592)
+.++++.+.++++.++++|.++++|+|+..++....++....|..++..|..++|...|..++.+++.++...++++|++
T Consensus 162 ~~~~~~~l~~~~~~a~~~~~~v~~HaE~~~~~~~~~~~~~~~G~~~~~~~~~~rP~~~E~~av~~~~~la~~~g~~~~i~ 241 (486)
T PLN02942 162 LMVTDELLLEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATARAIRLAKFVNTPLYVV 241 (486)
T ss_pred CCCCHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHHHcCCCChhhhhccCCchHHHHHHHHHHHHHHHhCCCEEEE
Confidence 77889999999999999999999999998888777778888999999999999999999999999999999999999999
Q ss_pred ecccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCc-ccccccceecCCCCCCCCCHHHHHHHHhcCCce
Q psy6858 258 HIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCT-WHDQAAHVLSPPLRPDETTPTHLLTLLNENALQ 336 (592)
Q Consensus 258 hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~-~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~ 336 (592)
|+++.+.++.|+.+|+. |+ .|++|+++++|.++...+..+ +..+..+.++||+|. ..++++||++++.|+++
T Consensus 242 H~s~~~~~e~i~~~k~~----G~--~Vt~e~~ph~L~l~~~~~~~~~~~~~~~~k~~PPlr~-~~~~~~L~~~l~~G~i~ 314 (486)
T PLN02942 242 HVMSIDAMEEIARARKS----GQ--RVIGEPVVSGLVLDDSKLWDPDFTIASKYVMSPPIRP-AGHGKALQAALSSGILQ 314 (486)
T ss_pred ECCCHHHHHHHHHHHHC----CC--cEEEEECchhheeCHHHhcCcccccCcceEECCCCCC-HHHHHHHHHHhcCCceE
Confidence 99999999999999999 99 999999999999998887643 445567889999998 78899999999999999
Q ss_pred EEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCCc
Q psy6858 337 TTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDA 416 (592)
Q Consensus 337 ~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~A 416 (592)
++||||++++...|..+.++|..+|.|+.|+|.+++.+|++++..+.+++.++++++|.|||++||+++++|+|++|++|
T Consensus 315 ~igTDh~p~~~~~k~~~~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~i~~~~~l~~~t~~pA~~lgl~~~~G~l~~G~~A 394 (486)
T PLN02942 315 LVGTDHCPFNSTQKAFGKDDFRKIPNGVNGIEERMHLVWDTMVESGQISPTDYVRVTSTECAKIFNIYPRKGAILAGSDA 394 (486)
T ss_pred EEECCCCCCChHHhhcccCCHhhCCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCCCCCCCcCCCCcC
Confidence 99999999999999887778999999999999999999998888888999999999999999999998889999999999
Q ss_pred cEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEEECCEEEEECCeeeecCCCceeecCCCC
Q psy6858 417 DIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQGNYLPTHTN 483 (592)
Q Consensus 417 DlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv~GkvV~~~g~l~~~~g~g~~~~~~~~ 483 (592)
|||+||++..++++...+++...++||+|+++.|+|..||++|++||+||++...+|.|+||+++.+
T Consensus 395 Dlv~vd~~~~~~v~~~~~~s~~~~~py~g~~l~g~v~~tiv~G~~v~~~g~~~~~~~~G~~~~~~~~ 461 (486)
T PLN02942 395 DIIILNPNSTFTISAKTHHSRIDTNVYEGRRGKGKVEVTISQGRVVWENGELKVVRGSGRYIEMPPF 461 (486)
T ss_pred CEEEEcCCccEEEcHHHccccCCCCCccCcEeeeeEEEEEECCEEEEECCEEeccCCCceEecCCCc
Confidence 9999999999999998889999999999999999999999999999999999888999999999876
No 3
>PRK13404 dihydropyrimidinase; Provisional
Probab=100.00 E-value=4.9e-66 Score=562.39 Aligned_cols=454 Identities=37% Similarity=0.614 Sum_probs=402.5
Q ss_pred cccEEEEccEEEcCCCceeeEEEEECCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCccccc-CCCCChhhHHHH
Q psy6858 18 QNRLLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELEL-MGATSVDDFYHG 96 (592)
Q Consensus 18 ~~~llIkng~Iv~~d~~~~~dV~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~-~~~~~~d~~~~~ 96 (592)
.|+++|+|++|++++....++|+|+||+|++|++.. +.+.++||++|++|||||||+|+|+..+. .+....+++.++
T Consensus 3 ~~d~~i~~~~v~~~~~~~~~~i~I~dg~I~~i~~~~--~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~~e~~~~~ 80 (477)
T PRK13404 3 AFDLVIRGGTVVTATDTFQADIGIRGGRIAALGEGL--GPGAREIDATGRLVLPGGVDSHCHIDQPSGDGIMMADDFYTG 80 (477)
T ss_pred CCcEEEECCEEEcCCCceEEEEEEECCEEEEecCCC--CCCCeEEECCCCEEecCEEEeEEcCCccccCCccccchHHHH
Confidence 368899999999987767899999999999998754 34678999999999999999999997652 233456899999
Q ss_pred HHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccccccCCChHHH-HHHHHHHHHcCCcEEEEEEeeC
Q psy6858 97 TKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVGITWWSDQVQ-QEMAELCEKHGVNSFKTFMAYK 175 (592)
Q Consensus 97 ~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lv~~~Gv~~~k~~~~~~ 175 (592)
+++++++||||++|+....+...+.++++.....+.....++|++|..++...++.. +++.++++ .|+.+||+|+++.
T Consensus 81 s~aa~~gGvTtv~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~~~v~~l~~-~G~~~iKi~~~~~ 159 (477)
T PRK13404 81 TVSAAFGGTTTVIPFAAQHRGQSLREAVEDYHRRAAGKAVIDYAFHLIVADPTEEVLTEELPALIA-QGYTSFKVFMTYD 159 (477)
T ss_pred HHHHHcCCccEEEEccCCCCCCCHHHHHHHHHHHhccCcEEEEEEEEEecCCChhhHHHHHHHHHH-cCCCEEEEEecCC
Confidence 999999999999998765556677888888888887788999999987776555433 67877764 5999999998754
Q ss_pred CCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCEE
Q psy6858 176 GLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLY 255 (592)
Q Consensus 176 ~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~ 255 (592)
+ ..+++++++++++.|+++|.++.+|+|+..++....+.+...|.+.++.|..++|...|.+++.+++.++++.+||+|
T Consensus 160 ~-~~~~~~~l~~~~~~a~~~g~~V~~Hae~~~~i~~~~~~~~~~G~~~~~~~~~~rp~~~E~~~v~~~~~la~~~g~~~h 238 (477)
T PRK13404 160 D-LKLDDRQILDVLAVARRHGAMVMVHAENHDMIAWLTKRLLAAGLTAPKYHAISRPMLAEREATHRAIALAELVDVPIL 238 (477)
T ss_pred C-CCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHCCCcchhhccccCCHHHHHHHHHHHHHHHHHhCCCEE
Confidence 4 457899999999999999999999999999888777888999999999999999999999999999999999999999
Q ss_pred EEecccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCcccccccceecCCCCCCCCCHHHHHHHHhcCCc
Q psy6858 256 VVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENAL 335 (592)
Q Consensus 256 i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~ 335 (592)
++|+++..+.+.|+.+|++ |+ .+++|+|+|||.++.+++...-..+..+.++||+|. .+++++||+++..|..
T Consensus 239 i~Hvs~~~~~~~i~~~k~~----g~--~vt~e~~ph~L~l~~~~~~~~~~~g~~~k~~Pplr~-~~d~~aL~~~l~~G~i 311 (477)
T PRK13404 239 IVHVSGREAAEQIRRARGR----GL--KIFAETCPQYLFLTAEDLDRPGMEGAKYICSPPPRD-KANQEAIWNGLADGTF 311 (477)
T ss_pred EEECCCHHHHHHHHHHHHC----CC--eEEEEEChhhhccCHHHhcCccccCCceEECCCCCC-hHHHHHHHHHHhCCCc
Confidence 9999999999999999999 99 999999999999998876431113456789999998 7899999999999999
Q ss_pred eEEeCCCCCCChhhh----hcC-CCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHHHcCCCCCCccc
Q psy6858 336 QTTGSDNCTFNKNQK----ELG-KDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVI 410 (592)
Q Consensus 336 ~~~gsD~~~~~~~~~----~~g-~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I 410 (592)
++++|||+|+....| ..+ ..+|+.+|.|++|+|.+++.+|++++..+.++++++++++|.||||+||+++++|+|
T Consensus 312 d~i~sDHap~~~~eK~~~~~~~~~~~~~~~~~G~~gie~~l~~ll~~~v~~~~ls~~~~~~~~t~~pA~~lgl~~~~G~i 391 (477)
T PRK13404 312 EVFSSDHAPFRFDDTDGKLAAGANPSFKAIANGIPGIETRLPLLFSEGVVKGRISLNRFVALTSTNPAKLYGLYPRKGAI 391 (477)
T ss_pred eEEecCCCCCCcccchhhhhccCCCCHhhCCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCCCCCcee
Confidence 999999999986544 112 237999999999999999999999888889999999999999999999998889999
Q ss_pred cCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEEECCEEEEECCeeeecCCCceeecCCC
Q psy6858 411 AEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQGNYLPTHT 482 (592)
Q Consensus 411 ~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv~GkvV~~~g~l~~~~g~g~~~~~~~ 482 (592)
++|++||||+||++..++++.+.+++...|+||+|+.+.|+|..||++|++||+||++....|.|||+++.+
T Consensus 392 ~~G~~ADlvivd~~~~~~v~~~~~~~~~~~sp~~g~~~~g~v~~tiv~G~vv~~~g~~~~~~~~G~~~~~~~ 463 (477)
T PRK13404 392 AIGADADIAIWDPDREVTITNADLHHAADYTPYEGMRVTGWPVTVLSRGRVVVEDGELVAERGSGQFLARSL 463 (477)
T ss_pred cCCCcCCEEEEcCCccEEEchHHhcccCCCCcccceEEeeeEEEEEECCEEEEECCEEecCCCceeEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999998888999999743
No 4
>COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]
Probab=100.00 E-value=5.2e-66 Score=547.42 Aligned_cols=428 Identities=30% Similarity=0.434 Sum_probs=392.8
Q ss_pred ccEEEEccEEEcCCCceeeEEEEECCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCcccccCCCCChhhHHHHHH
Q psy6858 19 NRLLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELELMGATSVDDFYHGTK 98 (592)
Q Consensus 19 ~~llIkng~Iv~~d~~~~~dV~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~~~~~d~~~~~~~ 98 (592)
|+++|+|++||+++....+||+|+||+|++|+.++....+.++||++|++|+||+||.|+|+..|++ ...++|.++++
T Consensus 1 ~~~lIk~~~iv~~~~~~~~di~i~~g~I~~Ig~~l~~~~~~~iiD~~g~~v~PG~ID~HVH~repg~--~~ke~~~tgs~ 78 (430)
T COG0044 1 MDLLIKNARVVDPGEDEVADILIKDGKIAAIGKNLEPTSGAEIIDAKGLLVLPGLVDLHVHFREPGF--EHKETFETGSR 78 (430)
T ss_pred CcEEEeccEEEcCCCceEecEEEECCEEEEeccCCCCCCCCcEEECCCCEEccCeeEEEEecCCCCc--chhhhHHHHHH
Confidence 5789999999999888899999999999999987554467899999999999999999999998854 57788999999
Q ss_pred HHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccccccCCChHHHHHHHHHHHHcCCcEEEEEEeeCCCc
Q psy6858 99 AAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLY 178 (592)
Q Consensus 99 ~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~Gv~~~k~~~~~~~~~ 178 (592)
+|++||+|||+||.++.+.....++++.+...+..++.++|.++..++.++....+.++... ..+++.||.+.. .
T Consensus 79 AAa~GG~Ttv~dmPnt~P~~~~~~~~~~~~~~a~~~~~vd~~~~~~it~~~~~~~~~~~~~~----~~g~~~F~~~~~-~ 153 (430)
T COG0044 79 AAAAGGVTTVVDMPNTKPPIDTAEALEDKLERAKGKSVVDYAFYGGLTKGNLGKLELTERGV----EAGFKGFMDDST-G 153 (430)
T ss_pred HHHcCCceEEEECCCCCCCCCCHHHHHHHHHHhhccceeEEEEEEEEeccccchhhhhhhhh----ccceEEEecCCc-C
Confidence 99999999999999988888889999999999998999999999999998877544443332 567788988654 4
Q ss_pred CCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCEEEEe
Q psy6858 179 MLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVH 258 (592)
Q Consensus 179 ~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~i~h 258 (592)
......+++.+++++++|.++.+|+|+.+++. ......|...++.+...+|.+.|.+++.|.+.+++..++++|++|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~H~Ed~~~~~---~~~~~~g~~~~~~~~~~~p~~aE~~~iar~~~la~~~g~~vhi~H 230 (430)
T COG0044 154 ALDDDVLEEALEYAAELGALILVHAEDDDLIA---EGVMNEGLRAPELGLAGRPPIAEASAIARDLELARATGARVHICH 230 (430)
T ss_pred cCCHHHHHHHHHHHHhcCCeEEEecCChhHhh---hHHHhcCccchhhccCCCChHHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 57889999999999999999999999988776 556778999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCcccccccceecCCCCCCCCCHHHHHHHHhcCCceEE
Q psy6858 259 IMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQTT 338 (592)
Q Consensus 259 v~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~~~ 338 (592)
+++++++++|+.++.. |+ .|++|++++||.++...+.. .+..++++||||. .+++++||+.+.+|..+++
T Consensus 231 iSt~~sv~li~~ak~~----g~--~vt~EvtphHL~l~~~~~~~---~~~~~k~nPPLR~-~~dr~aL~~~l~~G~ID~i 300 (430)
T COG0044 231 ISTKESVELIRAAKAE----GI--RVTAEVTPHHLLLDEEDIED---LGTLAKVNPPLRD-EEDREALWEALKDGVIDVI 300 (430)
T ss_pred cCCHHHHHHHHHHhhc----CC--ceEEeecchheEccHhHhhc---cCcceEECCCCCC-HHHHHHHHHHHhCCCCcEE
Confidence 9999999999999999 99 99999999999999987765 4567889999998 8999999999999999999
Q ss_pred eCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCCccE
Q psy6858 339 GSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADI 418 (592)
Q Consensus 339 gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADl 418 (592)
+|||+|+...+|.. +|...|.|+.|+|..++++|+ +|..+.+++.++++++|+|||++||+++ +|.|++|++|||
T Consensus 301 asDHaPht~eeK~~---~f~~ap~G~~glE~~lpl~l~-lv~~g~lsl~~~v~~~S~nPA~ifgl~~-~g~i~~G~~ADl 375 (430)
T COG0044 301 ASDHAPHTLEEKRL---PFEEAPSGIPGLETALPLLLT-LVKKGRLSLERLVELLSTNPARIFGLPP-KGAIEEGADADL 375 (430)
T ss_pred EcCCCCCCHHHhcc---chhhCCCCCccHHHHHHHHHH-HHHcCCcCHHHHHHHHhhCHHHHhCCCC-CCcccCCCccCE
Confidence 99999999999974 499999999999999999999 9999999999999999999999999965 999999999999
Q ss_pred EEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEEECCEEEEECCeeeec
Q psy6858 419 VVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRVA 471 (592)
Q Consensus 419 Vv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv~GkvV~~~g~l~~~ 471 (592)
+|||++..++++.+++++...|+||+|+++.|.|.+||++|++||++|+....
T Consensus 376 ~lvD~~~~~~i~~~~~~sk~~~sPf~G~~~~g~v~~Ti~rG~~v~~~~~~~~~ 428 (430)
T COG0044 376 VLVDPDEEWTIRAEELYSKAKNSPFEGFELKGRVVATILRGKVVYEDGEVIAK 428 (430)
T ss_pred EEEcCCCCeEEchhhhccccCCCCcCCCEEeeeEEEEEECCEEEEECCcEecC
Confidence 99999999999999999999999999999999999999999999999976543
No 5
>TIGR02033 D-hydantoinase D-hydantoinase. This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme.
Probab=100.00 E-value=1.8e-65 Score=558.53 Aligned_cols=453 Identities=48% Similarity=0.784 Sum_probs=404.7
Q ss_pred EEEEccEEEcCCCceeeEEEEECCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCcccccCCCCChhhHHHHHHHH
Q psy6858 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELELMGATSVDDFYHGTKAA 100 (592)
Q Consensus 21 llIkng~Iv~~d~~~~~dV~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~~~~~d~~~~~~~~a 100 (592)
++|+|++|++++...+++|+|+||+|++|++....+.+.++||++|++|||||||+|+|+.++..+....++++.+++++
T Consensus 1 ~li~n~~vv~~~~~~~~~V~I~dg~I~~Ig~~~~~~~~~~vIDa~G~~vlPGlID~H~H~~~~~~~~~~~e~~~~~s~~a 80 (454)
T TIGR02033 1 KLIRGGTVVNADDVFQADVLIEGGKIVAVGRNLSPPDAVEEIDATGKYVMPGGIDVHTHLEMPFGGTVTADDFFTGTKAA 80 (454)
T ss_pred CEEECcEEEcCCCceEEEEEEECCEEEEecCCCCCCCCCcEEECCCCEEecCEecceeccCcccCCCCCcchHHHHHHHH
Confidence 57999999998877789999999999999976433345689999999999999999999988765567889999999999
Q ss_pred HcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccccccCCChHHHHHHHHHHHHcCCcEEEEEEeeCCCcCC
Q psy6858 101 VAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYML 180 (592)
Q Consensus 101 la~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~Gv~~~k~~~~~~~~~~~ 180 (592)
+++||||++|+....+.....++++...........+++++|...+.+..+..+++.....+.|+..+++|++++..+.+
T Consensus 81 ~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~ 160 (454)
T TIGR02033 81 AAGGTTTIIDFALPHKGESLTEALETWHEKAEGKSVIDYGFHMMITHWNDEVLEEHIPELVEEGITSFKVFMAYKNLLMV 160 (454)
T ss_pred HhCCCCEEEeCcCCCCCCCHHHHHHHHHHHhccCceEEEEEEecccCCcHHHHHHHHHHHHhcCCcEEEEEeecCCCCCC
Confidence 99999999999876655567777777777766667889999887766666656664444555789999999998888889
Q ss_pred CHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCEEEEecc
Q psy6858 181 SDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIM 260 (592)
Q Consensus 181 ~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~i~hv~ 260 (592)
++++++++++.|++++.++++|+|+........+++.+.|...+.+|..++|.+.|.+++.+++.++...++++|++|++
T Consensus 161 ~~~~l~~~~~~a~~~~~~v~~H~E~~~~~~~~~~~~~~~G~~~~~~~~~~~p~~~e~~~v~~~~~~~~~~~~~~~i~H~s 240 (454)
T TIGR02033 161 DDEELFEILKRAKELGALLQVHAENGDVIAELQARLLAQGKTGPEYHALSRPPESEAEAVARAIALAALANAPLYVVHVS 240 (454)
T ss_pred CHHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHHHHHcCCCChhHhhhcCCHHHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 99999999999999999999999988777777788888999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCcccccccceecCCCCCCCCCHHHHHHHHhcCCceEEeC
Q psy6858 261 SKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGS 340 (592)
Q Consensus 261 s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~~~gs 340 (592)
+..+.+.|+.+|+. |+ .|++|+|+++|.+++.++..+..+.+.++++||+|. ..++++||+++.+|..+++||
T Consensus 241 ~~~~~~~i~~~~~~----g~--~vt~e~~p~~l~~~~~~~~~~~~~~~~~~~~pPlr~-~~~~~~l~~~l~~G~i~~igt 313 (454)
T TIGR02033 241 TASAVDEIAEAREK----GQ--PVYGETCPQYLLLDDTIYDKPGFEGAKYVCSPPLRE-KEDQDALWSALSSGALQTVGS 313 (454)
T ss_pred CHHHHHHHHHHHHC----CC--eEEEEcCchheeecHHHhcCcccccceeEECCCCCC-hhhHHHHHHHhhcCCeEEEEC
Confidence 99999999999998 99 999999999999999988654335567789999997 789999999999999999999
Q ss_pred CCCCCChhhh-hcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCCccEE
Q psy6858 341 DNCTFNKNQK-ELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIV 419 (592)
Q Consensus 341 D~~~~~~~~~-~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlV 419 (592)
||++++...+ ..+.++|...|+|++|+|.+++.+|++++..+.+++.++++++|.|||++||+++++|+|++|++||||
T Consensus 314 Dh~p~~~~~k~~~~~~~~~~~~~G~~g~e~~l~~l~~~~v~~~~~~~~~~~~~~t~~pa~~~gl~~~~G~l~~G~~AD~~ 393 (454)
T TIGR02033 314 DHCPFNFAQKKAIGKDDFTKIPNGGPGVEERMTLLFDEGVATGRITLEKFVELTSTNPAKIFNMYPRKGTIAVGSDADIV 393 (454)
T ss_pred CCCCCCHHHhhhcccCCHhhCCCCCchHHhHHHHHHHHHHHcCCCCHHHHHHHHhhHHHHHcCCCCCCCccccCCcCCEE
Confidence 9999998776 344568999999999999999999999998889999999999999999999998889999999999999
Q ss_pred EEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEEECCEEEEECCeeeecCCCceeecC
Q psy6858 420 VWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQGNYLPT 480 (592)
Q Consensus 420 v~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv~GkvV~~~g~l~~~~g~g~~~~~ 480 (592)
|+|++..++++.+.+++...|+||.|+.++|+|..||++|++||+||++....|.|+|+++
T Consensus 394 i~d~~~~~~~~~~~~~~~~~~~p~~g~~~~g~v~~t~v~G~~v~~~g~~~~~~~~g~~~~~ 454 (454)
T TIGR02033 394 IWDPNRTTVISAETHHDNADYNPFEGFKVQGAVVSVLSRGRVVVEDGQFVGTAGSGRFIKR 454 (454)
T ss_pred EEcCCcCeeechHHhhccCCCCcccCeEEeeeEEEEEECCEEEEECCEEecCCCCcceecC
Confidence 9999999999999889999999999999999999999999999999999888889999974
No 6
>PRK08323 phenylhydantoinase; Validated
Probab=100.00 E-value=1.5e-64 Score=551.80 Aligned_cols=453 Identities=47% Similarity=0.759 Sum_probs=409.9
Q ss_pred ccEEEEccEEEcCCCceeeEEEEECCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCcccccCCCCChhhHHHHHH
Q psy6858 19 NRLLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELELMGATSVDDFYHGTK 98 (592)
Q Consensus 19 ~~llIkng~Iv~~d~~~~~dV~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~~~~~d~~~~~~~ 98 (592)
|+++|+|++|++++...+++|+|+||+|++|++. .+.++||++|++|+|||||+|+|+.+++.+....++++.+++
T Consensus 1 ~d~li~n~~v~~~~~~~~~~v~I~~g~I~~i~~~----~~~~viD~~g~~v~PGlID~H~H~~~~~~~~~~~e~~~~~~~ 76 (459)
T PRK08323 1 MSTLIKNGTVVTADDTYKADVLIEDGKIAAIGAN----LGDEVIDATGKYVMPGGIDPHTHMEMPFGGTVSSDDFETGTR 76 (459)
T ss_pred CcEEEECCEEEcCCCceEEEEEEECCEEEEEecC----CCceEEECCCCEEeccEEeeeeccccccCCccccCcHHHHHH
Confidence 5789999999998877889999999999999975 256899999999999999999999877655567899999999
Q ss_pred HHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccccccCCChHHHHHHHHHHHHcCCcEEEEEEeeCCCc
Q psy6858 99 AAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLY 178 (592)
Q Consensus 99 ~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~Gv~~~k~~~~~~~~~ 178 (592)
+++++||||++|+..+.+.....++++...........++++++.....+..+..+++.++++ .|+..+++++++++.+
T Consensus 77 ~a~~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~~ik~~~~~~~~~ 155 (459)
T PRK08323 77 AAACGGTTTIIDFALQPKGQSLREALEAWHGKAAGKAVIDYGFHMIITDWNEVVLDEMPELVE-EGITSFKLFMAYKGAL 155 (459)
T ss_pred HHHhCCCCEEEeCcCCCCCCChHHHHHHHHHHhccCceEEEEEEEEecCCcHHHHHHHHHHHH-cCCCEEEEEEecCCCC
Confidence 999999999999987666566777888777776667889999887766566666778888874 6889999999988778
Q ss_pred CCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCEEEEe
Q psy6858 179 MLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVH 258 (592)
Q Consensus 179 ~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~i~h 258 (592)
.++++++.++++.|+++|.++.+|+|+...+....+++...|...++.|...+|.+.|..++.+++.++...++++|++|
T Consensus 156 ~~s~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~v~~~~~~a~~~~~~~~i~H 235 (459)
T PRK08323 156 MLDDDELLRALQRAAELGALPMVHAENGDAIAYLQAKLLAEGKTGPEYHALSRPPEVEGEATNRAIMLAELAGAPLYIVH 235 (459)
T ss_pred CCCHHHHHHHHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCChhhhhccCCHHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 89999999999999999999999999888777777788888999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCc-ccccccceecCCCCCCCCCHHHHHHHHhcCCceE
Q psy6858 259 IMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCT-WHDQAAHVLSPPLRPDETTPTHLLTLLNENALQT 337 (592)
Q Consensus 259 v~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~-~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~~ 337 (592)
+++.+..+.|+.+|++ |+ .|++|+|++||.++.+.+... |..+..++++||+|. .++.++||+++++|..++
T Consensus 236 ~s~~~~~~~i~~ak~~----g~--~vt~e~~p~~l~l~~~~~~~~~~~~g~~~k~~pPlr~-~~~~~~l~~~l~~G~i~~ 308 (459)
T PRK08323 236 VSCKEALEAIRRARAR----GQ--RVFGETCPQYLLLDESEYDGPDWFEGAKYVMSPPLRD-KEHQDALWRGLQDGDLQV 308 (459)
T ss_pred CCCHHHHHHHHHHHHC----CC--eEEEEcCccceeecHHHhcCCccccccceEECCCCCC-hHHHHHHHHHhhcCCeeE
Confidence 9999999999999999 99 999999999999998876543 444567789999998 788999999999999999
Q ss_pred EeCCCCCCChhhhh-cCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCCc
Q psy6858 338 TGSDNCTFNKNQKE-LGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDA 416 (592)
Q Consensus 338 ~gsD~~~~~~~~~~-~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~A 416 (592)
++|||+|++..++. .+.++|+..|.|++|+|.+++.+|++++..+.++++++++++|.|||++||+++++|+|++|++|
T Consensus 309 i~sDh~p~~~~~~~~~~~~~~~~~p~G~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~t~~pA~~lgl~~~~G~l~~G~~A 388 (459)
T PRK08323 309 VATDHCPFCFEQKKQLGRGDFTKIPNGTPGVEDRMPLLFSEGVMTGRITLNRFVELTSTNPAKIFGLYPRKGTIAVGADA 388 (459)
T ss_pred EECCCCCCChHHhcccccCCHhhCCCCcchHhhhHHHHHHHHHHcCCCCHHHHHHHHhhHHHHHhCCCCCCcccCCCCcC
Confidence 99999999988876 46678999999999999999999988888889999999999999999999998889999999999
Q ss_pred cEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEEECCEEEEECCeeeecCCCceeecCCCC
Q psy6858 417 DIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQGNYLPTHTN 483 (592)
Q Consensus 417 DlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv~GkvV~~~g~l~~~~g~g~~~~~~~~ 483 (592)
||||||++..++++.+.+++...|+||+|+++.|.|..||++|++||++|++....|.||||+++.|
T Consensus 389 Dlvi~d~~~~~~v~~~~~~s~~~~s~~~g~~~~g~v~~viv~G~~v~~~g~~~~~~~~G~~~~~~~~ 455 (459)
T PRK08323 389 DIVIWDPNATKTISASTLHSNVDYNPYEGFEVTGWPVTTLSRGEVVVEDGEFRGKAGHGRFLKRKPF 455 (459)
T ss_pred CEEEEcCCcccccCHHHHhhcCCCCcccCcEEeeeEEEEEECCEEEEECCEEeccCCCceEeeCCCC
Confidence 9999999999999999999999999999999999999999999999999999888889999998766
No 7
>cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin. The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues.
Probab=100.00 E-value=1.5e-64 Score=550.01 Aligned_cols=447 Identities=53% Similarity=0.868 Sum_probs=402.0
Q ss_pred EEEEccEEEcCCCceeeEEEEECCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCcccccCCCCChhhHHHHHHHH
Q psy6858 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELELMGATSVDDFYHGTKAA 100 (592)
Q Consensus 21 llIkng~Iv~~d~~~~~dV~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~~~~~d~~~~~~~~a 100 (592)
++|+|++|++++...+++|+|+||+|++|++....+.+.++||++|++|||||||+|+|+.+++.....+++++.+++++
T Consensus 1 lli~~~~v~~~~~~~~~~i~I~~g~I~~ig~~~~~~~~~~viD~~g~~vlPGlID~H~H~~~~~~~~~~~e~~~~~~~~a 80 (447)
T cd01314 1 LIIKNGTIVTADGSFKADILIEDGKIVAIGPNLEAPGGVEVIDATGKYVLPGGIDPHTHLELPFMGTVTADDFESGTRAA 80 (447)
T ss_pred CEEECCEEECCCCceeeeEEEECCEEEEeeCCCCCCCCceEEECCCCEEecCEEeccccccccccCccCcchHHHHHHHH
Confidence 58999999998877789999999999999986443335689999999999999999999987765556789999999999
Q ss_pred HcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccccccCCChHHHHHHHHHHHHcCCcEEEEEEeeCCCcCC
Q psy6858 101 VAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYML 180 (592)
Q Consensus 101 la~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~Gv~~~k~~~~~~~~~~~ 180 (592)
+++||||++|+..+.+.....++++.....+.....++++++.....+.....++++++++ .|+..+++|++++..+.+
T Consensus 81 ~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~-~g~~~ik~~~~~~~~~~~ 159 (447)
T cd01314 81 AAGGTTTIIDFAIPNKGQSLLEAVEKWRGKADGKSVIDYGFHMIITDWTDSVIEELPELVK-KGISSFKVFMAYKGLLMV 159 (447)
T ss_pred HhCCCcEEEeCCCCCCCCCHHHHHHHHHHHhcCCCcccEEEEEeecCCChHHHHHHHHHHH-cCCCEEEEEeccCCCCCC
Confidence 9999999999986555567788888887777667788888887766556666778888776 688899999998888888
Q ss_pred CHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCEEEEecc
Q psy6858 181 SDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIM 260 (592)
Q Consensus 181 ~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~i~hv~ 260 (592)
+++++.++++.++++|.++++|+|+...+....++....|...++.|..++|.+.|.+++.+.+.+++..++++|++|++
T Consensus 160 s~~~l~~~~~~a~~~g~~v~~H~E~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~v~~~~~la~~~~~~~~~~H~s 239 (447)
T cd01314 160 DDEELLDVLKRAKELGALVMVHAENGDVIAELQKKLLAQGKTGPEYHALSRPPEVEAEATARAIRLAELAGAPLYIVHVS 239 (447)
T ss_pred CHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHHHcCCCChHHhhhcCCHHHHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 99999999999999999999999998877777777778899999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCcccccccceecCCCCCCCCCHHHHHHHHhcCCceEEeC
Q psy6858 261 SKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGS 340 (592)
Q Consensus 261 s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~~~gs 340 (592)
+..+.+.|+.+|++ |+ .+++|+|++++.++.+++...+..+..+.++||+|. ..++++||+++++|+++++||
T Consensus 240 ~~~~~~~i~~~k~~----g~--~v~~~~~ph~l~~~~~~~~~~~~~g~~~~~~pplr~-~~~~~~l~~~l~~G~i~~igs 312 (447)
T cd01314 240 SKEAADEIARARKK----GL--PVYGETCPQYLLLDDSDYWKDWFEGAKYVCSPPLRP-KEDQEALWDGLSSGTLQTVGS 312 (447)
T ss_pred CHHHHHHHHHHHHC----CC--eEEEecCchhheeCHHHhccccccccceEECCCCCC-hHHHHHHHHHHhCCCeeEEEC
Confidence 99999999999998 99 999999999999999887533333556789999998 688999999999999999999
Q ss_pred CCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCCccEEE
Q psy6858 341 DNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVV 420 (592)
Q Consensus 341 D~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv 420 (592)
||++++..+++...++|...|.|++|+|.+++.+|++++..+.|+++++++++|.|||++||+++++|+|++|++|||||
T Consensus 313 Dh~~~~~~~k~~~~~~~~~~~~G~~g~e~~l~~l~~~~~~~~~~~~~~~~~~~t~~pA~~~gl~~~~G~l~~G~~AD~vi 392 (447)
T cd01314 313 DHCPFNFAQKARGKDDFTKIPNGVPGVETRMPLLWSEGVAKGRITLEKFVELTSTNPAKIFGLYPRKGTIAVGSDADLVI 392 (447)
T ss_pred CCCCCCHHHhhcccCCHhhCCCCCchHhhhHHHHHHHHHHcCCCCHHHHHHHHhhHHHHHhCCCCCCCccCCCCcCCEEE
Confidence 99999999888766789999999999999999999999888899999999999999999999999999999999999999
Q ss_pred EeCCceEEecCCcccccCCCCcccCeEEeeeeeEEEECCEEEEECCeeeecCCCc
Q psy6858 421 WNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQG 475 (592)
Q Consensus 421 ~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv~GkvV~~~g~l~~~~g~g 475 (592)
||++..++++.+.+++...++||+|+++.|+|..||++|++||+||++...+|.|
T Consensus 393 ~d~~~~~~~~~~~~~~~~~~~~~~g~~~~g~v~~t~v~G~~v~~~~~~~~~~~~g 447 (447)
T cd01314 393 WDPNAEKTISADTHHHNVDYNIFEGMKVKGWPVVTISRGKVVVEDGELVGEKGSG 447 (447)
T ss_pred EeCCcCEEecHHHhhccCCCCcccCeEEeeeEEEEEECCEEEEECCEEeccCCCC
Confidence 9999999999998999999999999999999999999999999999998877765
No 8
>PLN02795 allantoinase
Probab=100.00 E-value=4.2e-63 Score=541.48 Aligned_cols=445 Identities=24% Similarity=0.319 Sum_probs=384.7
Q ss_pred ccEEEEccEEEcCCCceeeEEEEECCEEEEeecCCCCC---CCCeEEecCCCEEeeCccccCcCcccccCCCCChhhHHH
Q psy6858 19 NRLLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVP---GGVRVIDAAGSYVIPGGIDPHTHFELELMGATSVDDFYH 95 (592)
Q Consensus 19 ~~llIkng~Iv~~d~~~~~dV~I~dG~I~~Ig~~~~~~---~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~~~~~d~~~~ 95 (592)
.+++|+|++|++++....++|+|+||+|++|+++...+ .+.++||++|++|+|||||+|+|+..+. ....+++.+
T Consensus 44 ~~~vi~~~~vv~~~~~~~~~v~i~dG~I~~I~~~~~~~~~~~~~~~ida~G~~v~PG~ID~H~H~~~~~--~~~~e~~~~ 121 (505)
T PLN02795 44 PHFVLYSKRVVTPAGVIPGAVEVEGGRIVSVTKEEEAPKSQKKPHVLDYGNAVVMPGLIDVHVHLNEPG--RTEWEGFPT 121 (505)
T ss_pred cceEEECCEEEECCCeEEEEEEEECCEEEEecCccccccccCCCEEEECCCCEEecCEEecccCcCCCC--ccchhHHHH
Confidence 59999999999988777899999999999999754321 2568999999999999999999997653 235689999
Q ss_pred HHHHHHcCCeeEEecccc-CCCCccHHHHHHHHHHHhccCceeeeeccccccCCChHHHHHHHHHHHHcCCcEEEEEEee
Q psy6858 96 GTKAAVAGGTTTIIDFAL-PRKGESLIKTYESWRQKADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAY 174 (592)
Q Consensus 96 ~~~~ala~GtTti~d~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~Gv~~~k~~~~~ 174 (592)
++++++++||||++||.. ..+.....++++...+.+.....++++++...........+++.++. +.|+.+||.||.+
T Consensus 122 ~~~aa~~gGvTtv~dmp~~~~P~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~~l~~~~-~~G~~g~k~f~~~ 200 (505)
T PLN02795 122 GTKAAAAGGITTLVDMPLNSFPSTTSVETLELKIEAAKGKLYVDVGFWGGLVPENAHNASVLEELL-DAGALGLKSFMCP 200 (505)
T ss_pred HHHHHHcCCcEEEECCCCCCCCCCChHHHHHHHHHHhccCceeeeeceecccCcchhHHHHHHHHH-HCCCcEEEEEecc
Confidence 999999999999999973 33445566777777777666788999988766554445566777765 3599899999976
Q ss_pred CCCc---CCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhccc-
Q psy6858 175 KGLY---MLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQV- 250 (592)
Q Consensus 175 ~~~~---~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~- 250 (592)
++.+ ..+++.++++++.++++|.++.+|+|+.+++.... ....+...+..+..++|+..|.+++.+.+.+++..
T Consensus 201 ~~~~~~~~~~~~~l~~~~~~a~~~g~~v~iH~E~~~l~~~~~--~~~~~~~~~~~~~~~rP~~aE~~ai~~~~~la~~~~ 278 (505)
T PLN02795 201 SGINDFPMTTATHIKAALPVLAKYGRPLLVHAEVVSPVESDS--RLDADPRSYSTYLKSRPPSWEQEAIRQLLEVAKDTR 278 (505)
T ss_pred cCCCCcccCCHHHHHHHHHHHHHhCCEEEEecCChhHhhhhh--hhhcCCcChhHhcccCCHHHHHHHHHHHHHHHHHhh
Confidence 5543 56888999999999999999999999988664221 33556666677788999999999999999999999
Q ss_pred ------CCCEEEEecccH-HHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCcccccccceecCCCCCCCCCH
Q psy6858 251 ------DCPLYVVHIMSK-AAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTP 323 (592)
Q Consensus 251 ------~~pl~i~hv~s~-~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr~~~~~~ 323 (592)
++++|+.|+++. ++.++|+.+|++ |+ .|++|+|++||.++..++.. ....+.++||||. .+++
T Consensus 279 ~~~~~~g~~lhi~HiSt~~~~~e~i~~ak~~----G~--~Vt~Ev~ph~L~l~~~~~~~---~~~~~k~~PPLR~-~~d~ 348 (505)
T PLN02795 279 PGGVAEGAHVHIVHLSDAESSLELIKEAKAK----GD--SVTVETCPHYLAFSAEEIPD---GDTRYKCAPPIRD-AANR 348 (505)
T ss_pred hcccCCCCCEEEEECCChHHHHHHHHHHHHC----CC--cEEEEeChhhhcccHHHccC---CCCceEEcCCCCC-hHHH
Confidence 999999999999 999999999999 99 99999999999999887643 2456789999998 7899
Q ss_pred HHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHHHcCC
Q psy6858 324 THLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNL 403 (592)
Q Consensus 324 ~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~lgl 403 (592)
++||+++..|.+++++|||+|++..+|..+..+|+..|.|++|+|..++++|+.++ .+++++.++++++|.|||++||+
T Consensus 349 ~aL~~al~~G~Id~i~sDHap~~~~~K~~~~~~~~~a~~G~~gle~~l~~~~~~~~-~~~l~l~~~v~~~s~~pA~~~gl 427 (505)
T PLN02795 349 ELLWKALLDGDIDMLSSDHSPSPPDLKLLEEGNFLRAWGGISSLQFVLPATWTAGR-AYGLTLEQLARWWSERPAKLAGL 427 (505)
T ss_pred HHHHHHHhCCCceEEecCCCCCChHHhccCcCCHhhCCCCceeHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999987777899999999999999999998776 55699999999999999999999
Q ss_pred CCCCccccCCCCccEEEEeCCceEEecCCc-ccccCC-CCcccCeEEeeeeeEEEECCEEEEECCeeeecCCCceeecCC
Q psy6858 404 YPKKGVIAEGSDADIVVWNYKAKRTISAKT-HAHACD-YNIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQGNYLPTH 481 (592)
Q Consensus 404 ~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~-~~~~~~-~~~~~g~~~~g~~~~Viv~GkvV~~~g~l~~~~g~g~~~~~~ 481 (592)
+++|+|++|++|||||||++..++++.+. .++... |+||+|+++.|+|..||++|++||++|++. .++.|+|++.+
T Consensus 428 -~~~G~l~~G~~ADlvi~d~~~~~~v~~~~~~~s~~~~~sp~~G~~l~g~v~~tiv~G~~v~~~g~~~-~~~~G~~~~~~ 505 (505)
T PLN02795 428 -DSKGAIAPGKDADIVVWDPEAEFVLDESYPIYHKHKSLSPYLGTKLSGKVIATFVRGNLVFLEGKHA-KQACGSPILAK 505 (505)
T ss_pred -CCCCccCCCCccCEEEEcCCcceEECcchhhhhcCCCcCCCCCeEEEeEEEEEEECCEEEEECCeEc-CCCCCeEecCC
Confidence 78999999999999999999999999875 566675 999999999999999999999999999987 57789999753
No 9
>PRK08044 allantoinase; Provisional
Probab=100.00 E-value=1.9e-62 Score=530.72 Aligned_cols=440 Identities=26% Similarity=0.321 Sum_probs=391.3
Q ss_pred cccEEEEccEEEcCCCceeeEEEEECCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCcccccCCCCChhhHHHHH
Q psy6858 18 QNRLLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELELMGATSVDDFYHGT 97 (592)
Q Consensus 18 ~~~llIkng~Iv~~d~~~~~dV~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~~~~~d~~~~~~ 97 (592)
+++++|+|++|++++....++|+|+||+|.+|++... .+.++||++|++|+|||||+|+|+..+... ..+++.+++
T Consensus 2 ~~~~~i~n~~vi~~~~~~~~~i~I~dg~I~~i~~~~~--~~~~~iD~~G~~v~Pg~iD~h~h~~~~~~~--~~e~~~~~~ 77 (449)
T PRK08044 2 SFDLIIKNGTVILENEARVVDIAVKGGKIAAIGQDLG--DAKEVMDASGLVVSPGMVDAHTHISEPGRS--HWEGYETGT 77 (449)
T ss_pred CceEEEECcEEEcCCCCEEEEEEEECCEEEEecCCCC--CCCeEEECCCCEEcCCeeccccccCCCCcc--ccccHHHHH
Confidence 3689999999998777778999999999999987542 366899999999999999999999876533 378899999
Q ss_pred HHHHcCCeeEEecccc-CCCCccHHHHHHHHHHHhccCceeeeeccccccCCChHHHHHHHHHHHHcCCcEEEEEEeeCC
Q psy6858 98 KAAVAGGTTTIIDFAL-PRKGESLIKTYESWRQKADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKG 176 (592)
Q Consensus 98 ~~ala~GtTti~d~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~Gv~~~k~~~~~~~ 176 (592)
++++++||||++|+.. ..+.....+.++.+.+.+..+++++|.++..++.. ...++.++++ .|+.+||+||.|++
T Consensus 78 ~aa~~gGvTtv~d~~~~~~p~~~~~~~~~~~~~~~~~~s~vd~~~~~~~~~~---~~~ei~~l~~-~gv~~fk~~~~~~~ 153 (449)
T PRK08044 78 RAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLVSY---NLDRLHELDE-VGVVGFKCFVATCG 153 (449)
T ss_pred HHHHhCCceEEECCccCCCCCCCcHHHHHHHHHHhccCCeeeEEEEeeeCCC---CHHHHHHHHH-cCceEEEEEecccC
Confidence 9999999999999973 33455667888888888888889999988877644 3567777754 59999999998643
Q ss_pred C-------cCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcc
Q psy6858 177 L-------YMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQ 249 (592)
Q Consensus 177 ~-------~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~ 249 (592)
. ...++..++++++.++++|.++.+|+|+..++..........|...++.+..++|...|.+++.+.+.++++
T Consensus 154 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~H~E~~~l~~~~~~~~~~~G~~~~~~~~~~~P~~~E~~~v~r~~~lA~~ 233 (449)
T PRK08044 154 DRGIDNDFRDVNDWQFYKGAQKLGELGQPVLVHCENALICDELGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLAKV 233 (449)
T ss_pred cccccCCccCcCHHHHHHHHHHHHhcCCEEEEecCCHHHHHHHHHHHHhcCCCChhhccccCCHHHHHHHHHHHHHHHHH
Confidence 1 235778899999999999999999999999887767777888999999999999999999999999999999
Q ss_pred cCCCEEEEecccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCcccccccceecCCCCCCCCCHHHHHHH
Q psy6858 250 VDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTL 329 (592)
Q Consensus 250 ~~~pl~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~ 329 (592)
.++++|+.|+++.++.+.+..+|+. |. .+++|+|+|+|.++..++.. .+..+.++||+|. ..++++||+.
T Consensus 234 ~g~~vhi~HiSt~~~~~~i~~ak~~----G~--~it~e~~~h~L~l~~~~~~~---~~~~~k~~PPlr~-~~d~~aL~~~ 303 (449)
T PRK08044 234 AGCRLHVCHISSPEGVEEVTRARQE----GQ--DVTCESCPHYFVLDTDQFEE---IGTLAKCSPPIRD-LENQKGMWEK 303 (449)
T ss_pred hCCCEEEEeCCCHHHHHHHHHHHHC----CC--CEEEEcChhhhcccHHHhhC---CCCcEEEcCCCCC-hHHHHHHHHH
Confidence 9999999999999999999999998 99 99999999999999988743 2456789999998 6889999999
Q ss_pred HhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHHHcCCCCCCcc
Q psy6858 330 LNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGV 409 (592)
Q Consensus 330 l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~ 409 (592)
|..|..++++|||+|++..+|. .+|+..|.|++|+|..|+.+|..++..++++++++++++|.||||+||+ +++|+
T Consensus 304 l~~G~id~i~sDH~P~~~~~K~---~~~~~~~~g~~g~e~~l~~~~~~~v~~~~l~~~~~v~~~s~npA~~lgl-~~~G~ 379 (449)
T PRK08044 304 LFNGEIDCLVSDHSPCPPEMKA---GNIMEAWGGIAGLQNCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGL-QQKGR 379 (449)
T ss_pred HhCCCceEEEcCCCCCChHHcc---CChhhCCCCceEHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhHHHHhCC-CCCCc
Confidence 9999999999999999877775 3799999999999999999999999999999999999999999999999 66899
Q ss_pred ccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEEECCEEEEECCeeeecCCCceeec
Q psy6858 410 IAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQGNYLP 479 (592)
Q Consensus 410 I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv~GkvV~~~g~l~~~~g~g~~~~ 479 (592)
|++|++|||||||++..++++.+.+++...|+||+|++++|+|..||++|++||++|+....++.|+||+
T Consensus 380 i~~G~~ADlvi~d~~~~~~v~~~~~~s~~~~sp~~G~~l~G~v~~t~~~G~~v~~~~~~~~~~~~G~~~~ 449 (449)
T PRK08044 380 IAPGKDADFVFIQPNSSYVLKNEDLEYRHKVSPYVGRTIGARITKTILRGDVIYDIEQGFPVAPKGQFIL 449 (449)
T ss_pred CCCCCccCEEEECCCCcEEECHHHccccCCCCCCCCCEEeeeEEEEEECCEEEEECCccccCCCCcccCC
Confidence 9999999999999999999999999999999999999999999999999999999998766778999874
No 10
>PRK06189 allantoinase; Provisional
Probab=100.00 E-value=3.6e-62 Score=530.24 Aligned_cols=443 Identities=29% Similarity=0.374 Sum_probs=388.9
Q ss_pred cccEEEEccEEEcCCCceeeEEEEECCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCcccccCCCCChhhHHHHH
Q psy6858 18 QNRLLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELELMGATSVDDFYHGT 97 (592)
Q Consensus 18 ~~~llIkng~Iv~~d~~~~~dV~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~~~~~d~~~~~~ 97 (592)
+++++|+|++|++++....++|+|+||+|++|++.... .+.++||++|++|+|||||+|+|+..+. ....+++.+++
T Consensus 2 ~~~~~i~~~~v~~~~~~~~~~v~i~~G~I~~i~~~~~~-~~~~~iD~~g~~vlPG~ID~H~H~~~~~--~~~~~~~~~~~ 78 (451)
T PRK06189 2 MYDLIIRGGKVVTPEGVYRADIGIKNGKIAEIAPEISS-PAREIIDADGLYVFPGMIDVHVHFNEPG--RTHWEGFATGS 78 (451)
T ss_pred CccEEEECCEEEcCCCcEEEEEEEECCEEEEecCCCCC-CCCeEEECCCCEEecCEEEeeeccCCCC--CCCcccHHHHH
Confidence 47899999999998887889999999999999976543 3568999999999999999999997653 34678999999
Q ss_pred HHHHcCCeeEEeccc-cCCCCccHHHHHHHHHHHhccCceeeeeccccccCCChHHHHHHHHHHHHcCCcEEEEEEeeCC
Q psy6858 98 KAAVAGGTTTIIDFA-LPRKGESLIKTYESWRQKADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKG 176 (592)
Q Consensus 98 ~~ala~GtTti~d~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~Gv~~~k~~~~~~~ 176 (592)
++++++||||++++. ...+.....+.+......+...++++|+++......+ .+++.+++ +.|+.+|++||.+.+
T Consensus 79 ~aa~~gGvTt~~~~p~~t~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~---~~~l~~l~-~~Gv~~~k~f~~~~~ 154 (451)
T PRK06189 79 AALAAGGCTTYFDMPLNSIPPTVTREALDAKAELARQKSAVDFALWGGLVPGN---LEHLRELA-EAGVIGFKAFMSNSG 154 (451)
T ss_pred HHHHhCCEEEEEECCCCCCCCCCcHHHHHHHHHHhCcCceEeEEEEecccccC---HHHHHHHH-HcCCcEEEEEccccC
Confidence 999999999999996 2223344556777777777778899999986554333 55777775 469999999986532
Q ss_pred ---CcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCC
Q psy6858 177 ---LYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCP 253 (592)
Q Consensus 177 ---~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~p 253 (592)
....++..++++++.+++++..+.+|+|+.+++......+...|..+++.+..++|...|.+++.+.+.++++.++|
T Consensus 155 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~e~~~~~~~~~~~~~~~g~~~~~~~~~~~P~~~E~~~v~~~l~la~~~g~~ 234 (451)
T PRK06189 155 TDEFRSSDDLTLYEGMKEIAALGKILALHAESDALTRHLTTQARQQGKTDVRDYLESRPVVAELEAVQRALLYAQETGCP 234 (451)
T ss_pred CCCcCcCCHHHHHHHHHHHHhcCCeEEEECCChHHHHHHHHHHHhcCCCChhHccccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 33467788999999999999999999999988777777788899999999999999999999999999999999999
Q ss_pred EEEEecccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCcccccccceecCCCCCCCCCHHHHHHHHhcC
Q psy6858 254 LYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNEN 333 (592)
Q Consensus 254 l~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G 333 (592)
+|+.|+++.++.++|+.+|.+ |+ .+++|+|+|+|.++..++.. .+..+.++||+|. .+++++||++++.|
T Consensus 235 ~hi~HiSt~~~~~~i~~~k~~----g~--~vt~ev~ph~L~l~~~~~~~---~~~~~~~~Pplr~-~~~~~~L~~~l~~G 304 (451)
T PRK06189 235 LHFVHISSGKAVALIAEAKKR----GV--DVSVETCPHYLLFTEEDFER---IGAVAKCAPPLRS-RSQKEELWRGLLAG 304 (451)
T ss_pred EEEEECCCHHHHHHHHHHHHC----CC--cEEEEeCHHHhhcCHhHhhC---cCCceEEeCCCCC-hhhHHHHHHHHhCC
Confidence 999999999999999999998 99 99999999999999887643 2346778999998 78899999999999
Q ss_pred CceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHHHcCCCCCCccccCC
Q psy6858 334 ALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEG 413 (592)
Q Consensus 334 ~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G 413 (592)
..++++|||+|++...|. ..+|...|.|++|+|.+++.+|++++..+++++.++++++|.|||++||+ +++|+|++|
T Consensus 305 ~i~~i~sDh~p~~~~~K~--~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~l~~~~~~~~~t~npA~~lgl-~~~G~l~~G 381 (451)
T PRK06189 305 EIDMISSDHSPCPPELKE--GDDFFLVWGGISGGQSTLLVMLTEGYIERGIPLETIARLLATNPAKRFGL-PQKGRLEVG 381 (451)
T ss_pred CceEEECCCCCCCHHHcC--cCCcccCCCCceeHHHHHHHHHHHHHhcCCCCHHHHHHHHhhhHHHHhCC-CCCCcccCC
Confidence 999999999999877764 24799999999999999999999888888999999999999999999999 678999999
Q ss_pred CCccEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEEECCEEEEECCeeeecCCCceeecCC
Q psy6858 414 SDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQGNYLPTH 481 (592)
Q Consensus 414 ~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv~GkvV~~~g~l~~~~g~g~~~~~~ 481 (592)
++|||||||++..++++.+.+++...++||+|+++.|+|..||++|++||++|++. ..+.|+||+++
T Consensus 382 ~~ADlvi~d~~~~~~~~~~~~~~~~~~~p~~g~~~~g~v~~tiv~G~~v~~~g~~~-~~~~G~~~~~~ 448 (451)
T PRK06189 382 ADADFVLVDLDETYTLTKEDLFYRHKQSPYEGRTFPGRVVATYLRGQCVYQDGEVF-PPPRGQLLRPS 448 (451)
T ss_pred CcCCEEEEcCCCCEEECHHHhhhcCCCCCcCCcEEEeEEEEEEECCEEEEECCEEc-cCCCCcEecCC
Confidence 99999999999999999988988899999999999999999999999999999987 45699999984
No 11
>PRK07369 dihydroorotase; Provisional
Probab=100.00 E-value=8.6e-62 Score=519.76 Aligned_cols=414 Identities=19% Similarity=0.234 Sum_probs=364.8
Q ss_pred cccEEEEccEEEcCCC--ceeeEEEEECCEEEEeecCCCC-CCCCeEEecCCCEEeeCccccCcCcccccCCCCChhhHH
Q psy6858 18 QNRLLIKNGKVVNADK--ISDLDIYIENGVIQQLGRNLIV-PGGVRVIDAAGSYVIPGGIDPHTHFELELMGATSVDDFY 94 (592)
Q Consensus 18 ~~~llIkng~Iv~~d~--~~~~dV~I~dG~I~~Ig~~~~~-~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~~~~~d~~~ 94 (592)
|.+++|+|++|+++.. ...++|+|+||+|++|+++... +.+.++||++|++|+|||||+|+|+..+. ....+++.
T Consensus 1 ~~~~~i~n~~v~d~~~~~~~~~~v~I~dg~I~~i~~~~~~~~~~~~~iDa~G~~vlPG~ID~H~H~~~~~--~~~~e~~~ 78 (418)
T PRK07369 1 MSNELLQQVRVLDPVSNTDRIADVLIEDGKIQAIEPHIDPIPPDTQIIDASGLILGPGLVDLYSHSGEPG--FEERETLA 78 (418)
T ss_pred CCCEEEeCeEEECCCCCcccceeEEEECCEEEEecCCcccCCCCCEEEECCCCEEecCEEecccccCCCC--cCCCccHH
Confidence 3578999999998542 3579999999999999976532 34679999999999999999999998763 45679999
Q ss_pred HHHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccccccCCCh-HHHHHHHHHHHHcCCcEEEEEEe
Q psy6858 95 HGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVGITWWSD-QVQQEMAELCEKHGVNSFKTFMA 173 (592)
Q Consensus 95 ~~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~lv~~~Gv~~~k~~~~ 173 (592)
+++++|++|||||++++....+.....+.++.+.+.+...++++|.++..++.+.. ...+++.++. +.|+.+|+.
T Consensus 79 s~~~aa~~GGvTtv~~~pn~~P~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~~ei~~l~-~~Gv~~f~~--- 154 (418)
T PRK07369 79 SLAAAAAAGGFTRVAILPDTFPPLDNPATLARLQQQAQQIPPVQLHFWGALTLGGQGKQLTELAELA-AAGVVGFTD--- 154 (418)
T ss_pred HHHHHHHhCCceEEEECCCCCCCCCCHHHHHHHHHHhcccCceeEEEEEEEeeCCCCccHhhHHHHH-HCCCEEEEC---
Confidence 99999999999999999876666677888999999988888999999998876543 4567888875 459998872
Q ss_pred eCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCC
Q psy6858 174 YKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCP 253 (592)
Q Consensus 174 ~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~p 253 (592)
+....+...|+++++.++++|.++.+|+|+..++... +...|...+..+..++|...|.+++.+++.+++..+||
T Consensus 155 --~~~~~~~~~l~~~~~~~~~~~~~v~~H~Ed~~l~~~~---~~~~g~~~~~~~~~~~p~~aE~~av~r~~~la~~~~~~ 229 (418)
T PRK07369 155 --GQPLENLALLRRLLEYLKPLGKPVALWPCDRSLAGNG---VMREGLLALRLGLPGDPASAETTALAALLELVAAIGTP 229 (418)
T ss_pred --CCcCCCHHHHHHHHHHHHhcCCeEEEecCChhhhhcC---cccCChhHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCc
Confidence 2223456689999999999999999999998875422 45556667777888899999999999999999999999
Q ss_pred EEEEecccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCcccccccceecCCCCCCCCCHHHHHHHHhcC
Q psy6858 254 LYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNEN 333 (592)
Q Consensus 254 l~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G 333 (592)
+|++|+++.+++++|+.+|++ |+ .|++|+|+|||.++..++.. ....++++||||. .+++++||+.+++|
T Consensus 230 ~hi~HvSs~~~~~~i~~ak~~----g~--~vt~Ev~phhL~l~~~~~~~---~~~~~kv~PPLR~-~~d~~aL~~~l~~G 299 (418)
T PRK07369 230 VHLMRISTARSVELIAQAKAR----GL--PITASTTWMHLLLDTEALAS---YDPNLRLDPPLGN-PSDRQALIEGVRTG 299 (418)
T ss_pred EEEEeCCCHHHHHHHHHHHHc----CC--CeEEEecHHHHhccHHHHhc---cCCCcEECCCCCC-HHHHHHHHHHHhcC
Confidence 999999999999999999999 99 99999999999999988753 3446789999998 78999999999999
Q ss_pred CceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHHHcCCCCCCccccCC
Q psy6858 334 ALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEG 413 (592)
Q Consensus 334 ~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G 413 (592)
.+.+++|||+|++..+|.. +|+.+|.|++|+|..|+.+|+.++..++++++++++++|.||||+||++ +|+|++|
T Consensus 300 ~Id~i~SDHaP~~~~~K~~---~~~~~~~G~~G~e~~l~~~~~~~v~~~~i~l~~~v~~~s~nPA~~lgl~--~G~i~~G 374 (418)
T PRK07369 300 VIDAIAIDHAPYTYEEKTV---AFAEAPPGAIGLELALPLLWQNLVETGELSALQLWQALSTNPARCLGQE--PPSLAPG 374 (418)
T ss_pred CCCEEEcCCCCCCHHHccC---CHhHCCCCceeHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhHHHHhCCC--cCcccCC
Confidence 9999999999999988863 7999999999999999999999999999999999999999999999994 5999999
Q ss_pred CCccEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEEE
Q psy6858 414 SDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIV 457 (592)
Q Consensus 414 ~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv 457 (592)
++|||+++|++..++++.+.+++.+.|+||+|++++|+|..||+
T Consensus 375 ~~ADlvi~d~~~~~~v~~~~~~s~~~~sp~~G~~l~G~v~~t~~ 418 (418)
T PRK07369 375 QPAELILFDPQKTWTVSAQTLHSLSRNTPWLGQTLKGRVLQTWV 418 (418)
T ss_pred CcCCEEEEcCCCCEEECcccccCCCCCCCCCCCEeeeEEEEEEC
Confidence 99999999999999999999999999999999999999999985
No 12
>TIGR03178 allantoinase allantoinase. This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases.
Probab=100.00 E-value=4.2e-60 Score=513.49 Aligned_cols=438 Identities=27% Similarity=0.375 Sum_probs=384.0
Q ss_pred cEEEEccEEEcCCCceeeEEEEECCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCcccccCCCCChhhHHHHHHH
Q psy6858 20 RLLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELELMGATSVDDFYHGTKA 99 (592)
Q Consensus 20 ~llIkng~Iv~~d~~~~~dV~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~~~~~d~~~~~~~~ 99 (592)
+++|+|++|++++....++|+|+||+|++|++... +.+.++||++|++|+|||||+|+|+..+. ....+++.+++++
T Consensus 1 dl~i~~~~v~~~~~~~~~~v~i~dg~I~~i~~~~~-~~~~~~id~~g~~v~PG~ID~H~H~~~~~--~~~~~~~~~~~~~ 77 (443)
T TIGR03178 1 DLIIRGGRVILPNGEREADVGVKGGKIAAIGPDIL-GPAAKIIDAGGLVVFPGVVDTHVHINEPG--RTEWEGFETGTRA 77 (443)
T ss_pred CEEEECcEEECCCCceEEEEEEECCEEEEeeCCCC-CCCCeEEECCCCEEeccEeccccccCCCC--ccccchHHHHHHH
Confidence 57999999999888788999999999999998633 34678999999999999999999997653 2346889999999
Q ss_pred HHcCCeeEEeccc-cCCCCccHHHHHHHHHHHhccCceeeeeccccccCCChHHHHHHHHHHHHcCCcEEEEEEeeCCC-
Q psy6858 100 AVAGGTTTIIDFA-LPRKGESLIKTYESWRQKADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGL- 177 (592)
Q Consensus 100 ala~GtTti~d~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~Gv~~~k~~~~~~~~- 177 (592)
++++||||++|+. ...+.....+.+......+.....++++++..... ...+++.++. +.|+.+||+||++.+.
T Consensus 78 ~~~gGvTtv~dmp~~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~~~i~~~~-~~G~~~ik~~~~~~~~~ 153 (443)
T TIGR03178 78 AAAGGITTYIDMPLNSIPATTTRASLEAKFEAAKGKLAVDVGFWGGLVP---YNLDDLRELD-EAGVVGFKAFLSPSGDD 153 (443)
T ss_pred HHcCCeEEEEECCCCCCCCCCcHHHHHHHHHHhccCCceeEEEEeccCC---CCHHHHHHHH-HCCCcEEEEEecccCCC
Confidence 9999999999996 33344455667777666666667889988765443 3355667665 4599999999976433
Q ss_pred --cCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCEE
Q psy6858 178 --YMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLY 255 (592)
Q Consensus 178 --~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~ 255 (592)
...++++++++++.++++|.++.+|+|+.+++....+.+...|...++.+...+|...|.+++.+.+.++++.++++|
T Consensus 154 ~~~~~~~~~l~~~~~~a~~~g~~v~~H~E~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~ae~~~~~~~~~la~~~g~~vh 233 (443)
T TIGR03178 154 EFPHVDDWQLYKGMRELARLGQLLLVHAENPAITSALGEEAPPQGGVGADAYLASRPVFAEVEAIRRTLALAKVTGCRVH 233 (443)
T ss_pred CcccCCHHHHHHHHHHHHhcCCeEEEeccChHHHHHHHHHHHhcCCCChhHhcCcCCHHHHHHHHHHHHHHHHHhCCCEE
Confidence 356788999999999999999999999998888888889999999999999999999999999999999999999999
Q ss_pred EEecccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCcccccccceecCCCCCCCCCHHHHHHHHhcCCc
Q psy6858 256 VVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENAL 335 (592)
Q Consensus 256 i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~ 335 (592)
+.|+++.++.+.++.+++. |+ .+++|+++++|.++...+.. ....+.++||+|. ..++++||+++++|..
T Consensus 234 i~Hiss~~~~~~i~~~~~~----g~--~it~e~~ph~l~l~~~~~~~---~~~~~~~~Pplr~-~~~~~~l~~~l~~G~i 303 (443)
T TIGR03178 234 VVHLSSAEAVELITEAKQE----GL--DVTVETCPHYLTLTAEEVPD---GGTLAKCAPPIRD-LANQEGLWEALLNGLI 303 (443)
T ss_pred EEeCCCHHHHHHHHHHHHC----CC--cEEEEECccceEecHHHhhC---cCcceEEcCCCCC-hHHHHHHHHHHHcCCc
Confidence 9999999999999999998 99 99999999999998877643 2446779999998 5789999999999999
Q ss_pred eEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCC
Q psy6858 336 QTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSD 415 (592)
Q Consensus 336 ~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ 415 (592)
++++|||+|+....|. ..+|...|.|++|+|..|+.+|..++..++++++++++++|.|||++||+ +++|+|++|++
T Consensus 304 ~~i~SDh~p~~~~~K~--~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~l~~~~~~~~~t~~pA~~~g~-~~~G~l~~G~~ 380 (443)
T TIGR03178 304 DCVVSDHSPCTPDLKR--AGDFFKAWGGIAGLQSTLDVMFDEAVQKRGLPLEDIARLMATNPAKRFGL-AQKGRIAPGKD 380 (443)
T ss_pred cEEeCCCCCCChHHcC--cCChhhCCCCeeEHHHhHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHcCC-CCCCccCCCCc
Confidence 9999999999987764 34799999999999999999998888889999999999999999999999 77899999999
Q ss_pred ccEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEEECCEEEEECCeeeecCCCceee
Q psy6858 416 ADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQGNYL 478 (592)
Q Consensus 416 ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv~GkvV~~~g~l~~~~g~g~~~ 478 (592)
|||||||++..++++.+.+++...++||+|+++.|+|..||++|++||++|++.... .|+||
T Consensus 381 Ad~vi~d~~~~~~~~~~~~~~~~~~~p~~g~~~~g~v~~t~v~G~~v~~~g~~~~~~-~g~~~ 442 (443)
T TIGR03178 381 ADFVFVDPDESYTLTPDDLYYRHKVSPYVGRTIGGRVRATYLRGQCIYDDEQFIGAP-KGQLL 442 (443)
T ss_pred CCEEEEcCCCcEEEcHHHhhhcCCCCCcCCcEEeeEEEEEEECCEEEEECCeeccCC-CCccc
Confidence 999999999899999888888899999999999999999999999999999987654 88876
No 13
>PRK07627 dihydroorotase; Provisional
Probab=100.00 E-value=1e-60 Score=512.87 Aligned_cols=421 Identities=19% Similarity=0.219 Sum_probs=349.8
Q ss_pred ccEEEEccEEEcCCCc--eeeEEEEECCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCcccccCCCCChhhHHHH
Q psy6858 19 NRLLIKNGKVVNADKI--SDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELELMGATSVDDFYHG 96 (592)
Q Consensus 19 ~~llIkng~Iv~~d~~--~~~dV~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~~~~~d~~~~~ 96 (592)
|+++|+|++|++++.. ..++|+|+||+|++|++....+.+.++||++|++|+|||||+|+|+..+. ....+++.++
T Consensus 1 m~~~i~~~~v~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~iDa~g~~vlPG~iD~H~H~~~~g--~~~~e~~~t~ 78 (425)
T PRK07627 1 MKIHIKGGRLIDPAAGTDRQADLYVAAGKIAAIGQAPAGFNADKTIDASGLIVCPGLVDLSARLREPG--YEYKATLESE 78 (425)
T ss_pred CeEEEEeeEEECCCCCccceeEEEEECCEEEEecCCCcCCCCCeEEECCCCEEeccEEeccccccCCC--ccccCcHHHH
Confidence 5799999999986443 47899999999999997643234679999999999999999999997663 3467899999
Q ss_pred HHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceee-eeccccccCCChHHHHHHHHHHHHcCCcEEEEEEeeC
Q psy6858 97 TKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCD-YALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYK 175 (592)
Q Consensus 97 ~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~lv~~~Gv~~~k~~~~~~ 175 (592)
+++|+++|||||+++....+..+..+.++.....+.....++ |.+......+......++.++++ .|+.+||.+
T Consensus 79 s~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~l~~-~G~~~fk~~---- 153 (425)
T PRK07627 79 MAAAVAGGVTSLVCPPDTDPVLDEPGLVEMLKFRARNLNQAHVYPLGALTVGLKGEVLTEMVELTE-AGCVGFSQA---- 153 (425)
T ss_pred HHHHHhCCeeEEEeCCCCCCCCCCHHHHHHHHHHhhccCceeEEEeCeEEcCCCccCHHHHHHHHh-CCEEEEEcC----
Confidence 999999999999998765444344444444444444333344 33332233445556778888864 599999854
Q ss_pred CCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCEE
Q psy6858 176 GLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLY 255 (592)
Q Consensus 176 ~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~ 255 (592)
+....++..++++++.++++|.++.+|+|+..+... .....|......+..++|...|.+++.+++.+|+..+||+|
T Consensus 154 ~~~~~~~~~l~~~~~~~~~~~~~v~~H~E~~~~~~~---~~~~~g~~~~~~~~~~~P~~aE~~av~r~~~la~~~~~~~h 230 (425)
T PRK07627 154 NVPVVDTQVLLRALQYASTFGFTVWLRPLDAFLGRG---GVAASGAVASRLGLSGVPVAAETIALHTIFELMRVTGARVH 230 (425)
T ss_pred CcccCCHHHHHHHHHHHHhcCCEEEEecCChhhhhC---CCcCCCHhHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCcEE
Confidence 223467888999999999999999999999754321 11222333344456678999999999999999999999999
Q ss_pred EEecccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCcccccccceecCCCCCCCCCHHHHHHHHhcCCc
Q psy6858 256 VVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENAL 335 (592)
Q Consensus 256 i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~ 335 (592)
|+|+++.++++.|+.+|++ |+ .|++|+|+|||.++.+++.. ....++++||||. .+++++||+++.+|..
T Consensus 231 i~HvSs~~~~~~i~~ak~~----g~--~vt~Ev~ph~L~l~~~~~~~---~~~~~k~~PPLR~-~~d~~~L~~~l~~G~i 300 (425)
T PRK07627 231 LARLSSAAGVALVRAAKAE----GL--PVTCDVGVNHVHLIDVDIGY---FDSQFRLDPPLRS-QRDREAIRAALADGTI 300 (425)
T ss_pred EEeCCCHHHHHHHHHHHHC----CC--CeEEEeccchheEeHhHHhc---cCCceEEeCCCCC-HHHHHHHHHHHhcCCC
Confidence 9999999999999999999 99 99999999999999888742 3457889999998 7999999999999999
Q ss_pred eEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCC
Q psy6858 336 QTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSD 415 (592)
Q Consensus 336 ~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ 415 (592)
++++|||+|+...+|. .+|+.+|.|++|+|..+++++..++ .++++++++++++|.|||++||+ ++|+|++|++
T Consensus 301 d~i~SDHaP~~~~~k~---~~~~~~~~G~~g~e~~~pl~~~~~~-~~~i~~~~~l~~~t~~pA~~lg~--~~G~l~~G~~ 374 (425)
T PRK07627 301 DAICSDHTPVDDDEKL---LPFAEATPGATGLELLLPLTLKWAD-EAKVPLARALARITSAPARVLGL--PAGRLAEGAP 374 (425)
T ss_pred cEEEcCCCCCCHHHcc---CCHhhCCCCceeHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHhCC--CCCcccCCCc
Confidence 9999999999877665 3799999999999999999987554 67899999999999999999999 5799999999
Q ss_pred ccEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEEECCEEEEEC
Q psy6858 416 ADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDE 465 (592)
Q Consensus 416 ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv~GkvV~~~ 465 (592)
||||+||++..++++.+.+++.+.|+||+|+++.|+|..||++|++||++
T Consensus 375 ADlvv~d~~~~~~v~~~~~~s~~~~sp~~g~~~~g~v~~t~v~G~~v~~~ 424 (425)
T PRK07627 375 ADLCVFDPDAHWRVEPRALKSQGKNTPFLGYELPGRVRATLVAGQVAFER 424 (425)
T ss_pred CCEEEECCCCcEEEChhhccccCCCCCCcCCEeeeEEEEEEECCEEEeec
Confidence 99999999999999999999999999999999999999999999999986
No 14
>cd01315 L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology). But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid.
Probab=100.00 E-value=1.8e-59 Score=510.02 Aligned_cols=443 Identities=30% Similarity=0.409 Sum_probs=388.4
Q ss_pred cEEEEccEEEcCCCceeeEEEEECCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCcccccCCCCChhhHHHHHHH
Q psy6858 20 RLLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELELMGATSVDDFYHGTKA 99 (592)
Q Consensus 20 ~llIkng~Iv~~d~~~~~dV~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~~~~~d~~~~~~~~ 99 (592)
+++|+|++|+|++...+++|+|+||+|++|++....+.+.++||++|++|+|||||+|+|+..+.. ...+++.+++++
T Consensus 1 dl~i~~~~v~~~~~~~~~~v~I~~g~I~~i~~~~~~~~~~~~iDa~G~~v~PG~ID~H~H~~~~~~--~~~e~~~~~s~a 78 (447)
T cd01315 1 DLVIKNGRVVTPDGVREADIAVKGGKIAAIGPDIANTEAEEVIDAGGLVVMPGLIDTHVHINEPGR--TEWEGFETGTKA 78 (447)
T ss_pred CEEEECCEEECCCCceEeEEEEECCEEEEEeCCCCCCCCCeEEECCCCEEeccEeeceeccCCCCc--cccccHHHHHHH
Confidence 589999999998777889999999999999986543457799999999999999999999976532 356789999999
Q ss_pred HHcCCeeEEecccc-CCCCccHHHHHHHHHHHhccCceeeeeccccccCCChHHHHHHHHHHHHcCCcEEEEEEeeCCC-
Q psy6858 100 AVAGGTTTIIDFAL-PRKGESLIKTYESWRQKADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGL- 177 (592)
Q Consensus 100 ala~GtTti~d~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~Gv~~~k~~~~~~~~- 177 (592)
++++||||++|+.. ..++....+.++...+.......++++++...... ..++++++.+ .|+.+||+|+.+...
T Consensus 79 al~gGvTtv~d~p~~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---~~~ei~~l~~-~G~~giKv~~~~~~~~ 154 (447)
T cd01315 79 AAAGGITTIIDMPLNSIPPTTTVENLEAKLEAAQGKLHVDVGFWGGLVPG---NLDQLRPLDE-AGVVGFKCFLCPSGVD 154 (447)
T ss_pred HHhCCceEEEeCCCCCCCCcCCHHHHHHHHHHhccCceeeEEEEEeecCC---CHHHHHHHHH-cCCcEEEEEecccCCC
Confidence 99999999999963 23444556677766666666678899887654433 3556666654 599999999875432
Q ss_pred --cCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCEE
Q psy6858 178 --YMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLY 255 (592)
Q Consensus 178 --~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~ 255 (592)
...++++++++++.++++|.++.+|+++.+++..........|.....++...+|...|.+++.+.+.++++.++++|
T Consensus 155 ~~~~~~~~~l~~~~~~a~~~g~~v~vH~e~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~~~~~~~la~~~g~~ih 234 (447)
T cd01315 155 EFPAVDDEQLEEAMKELAKTGSVLAVHAENPEITEALQEQAKAKGKRDYRDYLASRPVFTEVEAIQRILLLAKETGCRLH 234 (447)
T ss_pred CcccCCHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHhHhhcCCCChHHhhccCCHHHHHHHHHHHHHHHHHhCCCEE
Confidence 236888999999999999999999999999888888888888988888888999999999999999999999999999
Q ss_pred EEecccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCcccccccceecCCCCCCCCCHHHHHHHHhcCCc
Q psy6858 256 VVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENAL 335 (592)
Q Consensus 256 i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~ 335 (592)
+.|+++..+.+.++.++.+ |. .+++|+++++|.++...+.. .+..+.++||+|. ..++++||++++.|..
T Consensus 235 i~h~s~~~~~~~i~~~~~~----g~--~i~~e~~~h~l~~~~~~~~~---~~~~~~~~Pplr~-~~~~~~l~~~l~~g~i 304 (447)
T cd01315 235 IVHLSSAEAVPLIREARAE----GV--DVTVETCPHYLTFTAEDVPD---GGTEFKCAPPIRD-AANQEQLWEALENGDI 304 (447)
T ss_pred EEeCCCHHHHHHHHHHHHC----CC--ceEEEeccccEEEcHHHccC---CCCceEECCCCCC-hHHHHHHHHHHhCCce
Confidence 9999999999999999998 99 99999999999998877643 3456789999998 6889999999999999
Q ss_pred eEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCC
Q psy6858 336 QTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSD 415 (592)
Q Consensus 336 ~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ 415 (592)
++++|||+|+....|..+..+|...+.|++|++..|+.+|..++..++++++++++++|.|||++||+++++|+|++|++
T Consensus 305 ~~i~SDh~p~~~~~k~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~pa~~~g~~~~~G~l~~g~~ 384 (447)
T cd01315 305 DMVVSDHSPCTPELKLLGKGDFFKAWGGISGLQLGLPVMLTEAVNKRGLSLEDIARLMCENPAKLFGLSHQKGRIAVGYD 384 (447)
T ss_pred eEEeCCCCCCCHHHhccCCCChhhCCCCeeEHHHhHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCCCCCccccCCCC
Confidence 99999999999888876667899999999999999999998888889999999999999999999999878999999999
Q ss_pred ccEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEEECCEEEEECCeeeecCCCceeec
Q psy6858 416 ADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQGNYLP 479 (592)
Q Consensus 416 ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv~GkvV~~~g~l~~~~g~g~~~~ 479 (592)
|||||||++..+.++.+.+++...++||+|+.+.|+|..||++|++||++|++.... .||||.
T Consensus 385 Ad~~v~d~~~~~~~~~~~~~~~~~~~~~~g~~~~g~v~~ti~~G~~v~~~~~~~~~~-~G~~~~ 447 (447)
T cd01315 385 ADFVVWDPEEEFTVDAEDLYYKNKISPYVGRTLKGRVHATILRGTVVYQDGEVVGEP-LGQLLL 447 (447)
T ss_pred CCEEEEcCCCCEEEcHHHccccCCCCCccCeEEeeeEEEEEECCEEEEECCeEccCC-CceEeC
Confidence 999999999989998888888889999999999999999999999999999998766 899974
No 15
>PRK09060 dihydroorotase; Validated
Probab=100.00 E-value=8.7e-59 Score=501.88 Aligned_cols=436 Identities=27% Similarity=0.360 Sum_probs=370.2
Q ss_pred cccEEEEccEEEcCCCceeeEEEEECCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCcccccCCCCChhhHHHHH
Q psy6858 18 QNRLLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELELMGATSVDDFYHGT 97 (592)
Q Consensus 18 ~~~llIkng~Iv~~d~~~~~dV~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~~~~~d~~~~~~ 97 (592)
.++++|+|++|++++....++|+|+||+|.+|++... +.+.++||++|++|+|||||+|+|+..+. ....+++.+++
T Consensus 4 ~~d~~i~~~~v~~~~~~~~~~i~i~~g~I~~i~~~~~-~~~~~~iD~~G~~v~PG~ID~HvH~~~~~--~~~~e~~~t~~ 80 (444)
T PRK09060 4 TFDLILKGGTVVNPDGEGRADIGIRDGRIAAIGDLSG-ASAGEVIDCRGLHVLPGVIDSQVHFREPG--LEHKEDLETGS 80 (444)
T ss_pred cCcEEEECCEEECCCCCeeeEEEEECCEEEEecCCCC-CCCceEEECCCCEEccCEEeccccccCCC--CCccchHHHHH
Confidence 4789999999999887778999999999999987543 23568999999999999999999987653 34668999999
Q ss_pred HHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccccccCCChHHHHHHHHHHHHcCCcEEEEEEeeC--
Q psy6858 98 KAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYK-- 175 (592)
Q Consensus 98 ~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~Gv~~~k~~~~~~-- 175 (592)
++++++||||++++....+.....+.+....+.+...+.++|+++..+...+. +++.++....|+.+|++||.+.
T Consensus 81 ~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~~~---~~l~el~~~~gv~g~k~fm~~~~~ 157 (444)
T PRK09060 81 RAAVLGGVTAVFEMPNTNPLTTTAEALADKLARARHRMHCDFAFYVGGTRDNA---DELAELERLPGCAGIKVFMGSSTG 157 (444)
T ss_pred HHHHhCCcEEEEECCCCCCCCChHHHHHHHHHHhcccceeeEEEEeccCCCCH---HHHHHHHhhcCceEEEEEeccCCC
Confidence 99999999999999766555666777777777777678999999987765554 3445544445899999998642
Q ss_pred CCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCEE
Q psy6858 176 GLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLY 255 (592)
Q Consensus 176 ~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~ 255 (592)
.....++..+.++++. .+.++.+|+|+..++... ..+...| .+..|..++|...|.+++.+++.+++..++|+|
T Consensus 158 ~~~~~d~~~l~~~~~~---~~~~v~~H~E~~~l~~~~-~~~~~~g--~~~~~~~~~p~~aE~~av~~~~~la~~~~~~lh 231 (444)
T PRK09060 158 DLLVEDDEGLRRILRN---GRRRAAFHSEDEYRLRER-KGLRVEG--DPSSHPVWRDEEAALLATRRLVRLARETGRRIH 231 (444)
T ss_pred CcccCCHHHHHHHHHh---CCCeEEEECCCHHHHHHH-HHHHhcC--CcccccccCCHHHHHHHHHHHHHHHHHHCCCEE
Confidence 1222344456666544 488999999998877754 5555777 777888899999999999999999999999999
Q ss_pred EEecccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCcccccccceecCCCCCCCCCHHHHHHHHhcCCc
Q psy6858 256 VVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENAL 335 (592)
Q Consensus 256 i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~ 335 (592)
++|+++.++.+.++.+| - .+++|+|++||.++..++... ....+.++||+|. .+++++||++++.|.+
T Consensus 232 i~h~st~~~v~~i~~~~-------~--~vt~ev~ph~l~l~~~~~~~~--~~~~~k~~PPlr~-~~~~~~l~~al~~G~i 299 (444)
T PRK09060 232 VLHVSTAEEIDFLADHK-------D--VATVEVTPHHLTLAAPECYER--LGTLAQMNPPIRD-ARHRDGLWRGVRQGVV 299 (444)
T ss_pred EEeCCCHHHHHHHHHhC-------C--CeEEEeChHHhccCchhhccc--CCceEEEeCCCCC-HHHHHHHHHHHhCCCc
Confidence 99999999999887653 3 589999999999998873322 2345779999998 7899999999999999
Q ss_pred eEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCC
Q psy6858 336 QTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSD 415 (592)
Q Consensus 336 ~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ 415 (592)
++++|||+|+...+|.. +|..+|.|++|+|..+++++. .+..+.+++.++++++|.||||+||+ +++|+|++|++
T Consensus 300 d~i~sDh~p~~~~~k~~---~~~~~~~G~~g~e~~~~l~~~-~v~~g~l~~~~~~~~~s~~pa~~~gl-~~~G~l~~G~~ 374 (444)
T PRK09060 300 DVLGSDHAPHTLEEKAK---PYPASPSGMTGVQTLVPIMLD-HVNAGRLSLERFVDLTSAGPARIFGI-AGKGRIAVGYD 374 (444)
T ss_pred cEEecCCCCCCHHHhcC---CcccCCCCcccHHHHHHHHHH-HHHcCCCCHHHHHHHHhHhHHHHhCC-CCCCcccCCCc
Confidence 99999999999888764 799999999999999999996 48888999999999999999999999 77899999999
Q ss_pred ccEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEEECCEEEEECCeeeecCCCceeecCCCC
Q psy6858 416 ADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQGNYLPTHTN 483 (592)
Q Consensus 416 ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv~GkvV~~~g~l~~~~g~g~~~~~~~~ 483 (592)
|||||||++..++++.+.+++...|+||+|+++.|+|..||++|++||++|++.. .+.|+++++..+
T Consensus 375 ADlvl~d~~~~~~v~~~~~~s~~~~sp~~g~~l~g~~~~tiv~G~~v~~~g~~~~-~~~G~~~~~~~~ 441 (444)
T PRK09060 375 ADFTIVDLKRRETITNEWIASRCGWTPYDGKEVTGWPVGTIVRGQRVMWDGELVG-PPTGEPVRFLET 441 (444)
T ss_pred CCEEEEcCCCCEEEChHHhcccCCCCCCCCCEEeeeEEEEEECCEEEEECCEEcc-CCCccCcccccc
Confidence 9999999999999999999999999999999999999999999999999999875 579999997653
No 16
>PRK09059 dihydroorotase; Validated
Probab=100.00 E-value=2.4e-59 Score=502.87 Aligned_cols=420 Identities=19% Similarity=0.256 Sum_probs=358.7
Q ss_pred ccEEEEccEEEcCCCc--eeeEEEEECCEEEEeecCCC---CCCCCeEEecCCCEEeeCccccCcCcccccCCCCChhhH
Q psy6858 19 NRLLIKNGKVVNADKI--SDLDIYIENGVIQQLGRNLI---VPGGVRVIDAAGSYVIPGGIDPHTHFELELMGATSVDDF 93 (592)
Q Consensus 19 ~~llIkng~Iv~~d~~--~~~dV~I~dG~I~~Ig~~~~---~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~~~~~d~~ 93 (592)
-+++|+|++|++++.. ..++|+|+||+|++|++... .+.+.++||++|++|+|||||+|+|+..++ ....+++
T Consensus 3 ~~~~i~n~~v~~~~~~~~~~~~v~I~~G~I~~i~~~~~~~~~~~~~~viDa~G~~v~PG~ID~HvH~~~~~--~~~~e~~ 80 (429)
T PRK09059 3 RPILLANARIIDPSRGLDEIGTVLIEDGVIVAAGKGAGNQGAPEGAEIVDCAGKAVAPGLVDARVFVGEPG--AEHRETI 80 (429)
T ss_pred cCEEEEeeEEECCCCCcccceEEEEECCEEEEecCccccccCCCCCeEEECCCCEEeccEEecccccCCCC--chhhhhH
Confidence 4689999999997664 36899999999999997532 234668999999999999999999997653 3567889
Q ss_pred HHHHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccccccCC-ChHHHHHHHHHHHHcCCcEEEEEE
Q psy6858 94 YHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVGITWW-SDQVQQEMAELCEKHGVNSFKTFM 172 (592)
Q Consensus 94 ~~~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~lv~~~Gv~~~k~~~ 172 (592)
.+++++++++||||++++....+.....+.+..+...+...++++|.++..++.+ ..+...++..+. +.|+.+|+.+
T Consensus 81 ~~~s~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~l~e~~~l~-~~Gv~~f~~~- 158 (429)
T PRK09059 81 ASASRAAAAGGVTSIIMMPDTDPVIDDVALVEFVKRTARDTAIVNIHPAAAITKGLAGEEMTEFGLLR-AAGAVAFTDG- 158 (429)
T ss_pred HHHHHHHHhCCcEEEEeccCCCCCCCCHHHHHHHHHHhcccCcccEEEEeEEecCCCCcchHHHHHHH-hcCcEEEecC-
Confidence 9999999999999999997655555556677777777777778999998887765 455577887775 4588877621
Q ss_pred eeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCC
Q psy6858 173 AYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDC 252 (592)
Q Consensus 173 ~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~ 252 (592)
+....+...++++++.++++|.++.+|+|+.+++.. .....|......+..++|...|.+++.+++.+++..+|
T Consensus 159 ---~~~~~~~~~l~~~~~~~~~~~~~v~~H~E~~~l~~~---~~~~~~~~~~~~~~~~rP~~aE~~av~r~~~la~~~~~ 232 (429)
T PRK09059 159 ---RRSVANTQVMRRALTYARDFDAVIVHETRDPDLGGN---GVMNEGLFASWLGLSGIPREAEVIPLERDLRLAALTRG 232 (429)
T ss_pred ---CcccCCHHHHHHHHHHHHhcCCEEEEecCChhhhcC---CCcCCcHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 122234556889999999999999999999876441 11122223334556789999999999999999999999
Q ss_pred CEEEEecccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCcccccccceecCCCCCCCCCHHHHHHHHhc
Q psy6858 253 PLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNE 332 (592)
Q Consensus 253 pl~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~ 332 (592)
|+|++|+++.++.+.|+.+|++ |+ .|++|+|++||.++..++.. ....++++||||. .+++++||+.+.+
T Consensus 233 ~~hi~hvs~~~~~~~i~~ak~~----g~--~vt~ev~phhL~l~~~~~~~---~~~~~kvnPPLR~-~~d~~~L~~~l~~ 302 (429)
T PRK09059 233 RYHAAQISCAESAEALRRAKDR----GL--KVTAGVSINHLSLNENDIGE---YRTFFKLSPPLRT-EDDRVAMVEAVAS 302 (429)
T ss_pred cEEEEecCCHHHHHHHHHHHHC----CC--CEEEeecHHHHhccHHHHhc---cCCccEEcCCCCC-HHHHHHHHHHHHc
Confidence 9999999999999999999998 99 99999999999999887643 3456789999998 7899999999999
Q ss_pred CCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHHHcCCCCCCccccC
Q psy6858 333 NALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAE 412 (592)
Q Consensus 333 G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~ 412 (592)
|...+++|||+|++...|.. +|+..|.|++|+|..++++|. ++..+.+++.++++++|+||||+||+ + +|+|++
T Consensus 303 g~id~i~sDh~p~~~~~K~~---~~~~~~~G~~gle~~l~~~~~-~v~~~~l~l~~~~~~~s~nPA~~~gl-~-~G~l~~ 376 (429)
T PRK09059 303 GTIDIIVSSHDPQDVDTKRL---PFSEAAAGAIGLETLLAAALR-LYHNGEVPLLRLIEALSTRPAEIFGL-P-AGTLKP 376 (429)
T ss_pred CCCcEEEeCCCCCCHHHCcC---ChhhCCCCcccHHHHHHHHHH-HHHcCCCCHHHHHHHHhHHHHHHhCC-C-cCcccC
Confidence 99999999999999888753 799999999999999999996 78889999999999999999999999 4 699999
Q ss_pred CCCccEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEEECCEEEEE
Q psy6858 413 GSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVD 464 (592)
Q Consensus 413 G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv~GkvV~~ 464 (592)
|++||||+||++..++++.+.+++.+.|+||+|++++|+|..||++|++||+
T Consensus 377 G~~ADlvl~d~~~~~~v~~~~~~s~~~~sPf~G~~l~G~v~~ti~~G~~v~~ 428 (429)
T PRK09059 377 GAPADIIVIDLDEPWVVDPEDLKSRSKNTPFEEARFQGRVVRTIVAGKTVYE 428 (429)
T ss_pred CCcCCEEEECCCCCEEECcccCccCCCCCCCCCCEEeeEEEEEEECCEEEee
Confidence 9999999999999999999999999999999999999999999999999985
No 17
>PRK07575 dihydroorotase; Provisional
Probab=100.00 E-value=1.7e-58 Score=499.01 Aligned_cols=431 Identities=23% Similarity=0.361 Sum_probs=362.5
Q ss_pred cccEEEEccEEEcCCC-ceeeEEEEECCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCcccccCCCCChhhHHHH
Q psy6858 18 QNRLLIKNGKVVNADK-ISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELELMGATSVDDFYHG 96 (592)
Q Consensus 18 ~~~llIkng~Iv~~d~-~~~~dV~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~~~~~d~~~~~ 96 (592)
+|+++|+|++|++++. ...++|+|+||+|.+|++....+.+.++||++|++|+|||||+|+|+..+ +....++++++
T Consensus 2 ~~~~~i~~~~i~~~~~~~~~~~I~I~dg~I~~ig~~~~~~~~~~vid~~g~~v~PG~ID~H~H~~~~--~~~~~e~~~~~ 79 (438)
T PRK07575 2 MMSLLIRNARILLPSGELLLGDVLVEDGKIVAIAPEISATAVDTVIDAEGLTLLPGVIDPQVHFREP--GLEHKEDLFTA 79 (438)
T ss_pred cceEEEECCEEECCCCCEEeeeEEEECCEEEEecCCCCCCCCCeEEECCCCEEcccEEEeeeccCCC--CCcCcchHHHH
Confidence 4678999999998765 45689999999999999764433346899999999999999999998755 34578999999
Q ss_pred HHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccccccCCChHHHHHHHHHHHHcCCcEEEEEEeeCC
Q psy6858 97 TKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKG 176 (592)
Q Consensus 97 ~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~Gv~~~k~~~~~~~ 176 (592)
+++++++||||++|+....+..+..+.+..+...+.....++|+++..++.. ...++.. ..|+.+|+.|+.+..
T Consensus 80 ~~aa~~gGvTt~~dmp~~~p~~~~~~~~~~~~~~a~~~~~v~~~~~~~~~~~---~l~~l~~---~~~~~g~~~f~~~~~ 153 (438)
T PRK07575 80 SRACAKGGVTSFLEMPNTKPLTTTQAALDDKLARAAEKCVVNYGFFIGATPD---NLPELLT---ANPTCGIKIFMGSSH 153 (438)
T ss_pred HHHHHhCCEEEEEECCCCCCCCCcHHHHHHHHHHhccCcEEEEEEEcccccc---CHHHHHH---hhCCeEEEEEEeeCC
Confidence 9999999999999998765556667778777777777789999999776532 2334433 237788999875321
Q ss_pred -CcCCCHHH-HHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCE
Q psy6858 177 -LYMLSDGE-LYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPL 254 (592)
Q Consensus 177 -~~~~~~~~-l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl 254 (592)
.....+.. +.+. .++.+.++.+|+|+..++.... ....|...+..|..++|...|.+++.+++.++++.++++
T Consensus 154 ~~~~~~~~~~~~~~---~~~~~~~v~~h~e~~~l~~~~~--~~~~g~~~~~~~~~~~p~~aE~~av~~~~~la~~~g~~l 228 (438)
T PRK07575 154 GPLLVDEEAALERI---FAEGTRLIAVHAEDQARIRARR--AEFAGISDPADHSQIQDEEAALLATRLALKLSKKYQRRL 228 (438)
T ss_pred CCcccCcHHHHHHH---HHhCCCEEEEeCcChHHHHhhh--HhhccCcCcccccccCcHHHHHHHHHHHHHHHHHHCCCE
Confidence 11223333 3333 3467999999999988664332 344677788888889999999999999999999999999
Q ss_pred EEEecccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCcccccccceecCCCCCCCCCHHHHHHHHhcCC
Q psy6858 255 YVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENA 334 (592)
Q Consensus 255 ~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~ 334 (592)
|++|+++.++.+.++.+| +. .+++|++++||.++..++.. ....+.++||+|. .+++++||+++++|.
T Consensus 229 hi~HiSt~~~v~~i~~~k------~~--~vt~ev~phhL~l~~~~~~~---~~~~~k~~PPLR~-~~d~~~L~~~l~~G~ 296 (438)
T PRK07575 229 HILHLSTAIEAELLRQDK------PS--WVTAEVTPQHLLLNTDAYER---IGTLAQMNPPLRS-PEDNEALWQALRDGV 296 (438)
T ss_pred EEEECCCHHHHHHHHHhc------CC--CEEEEEchhhheeCHHHHhC---CCceEEEeCCCCC-HHHHHHHHHHHhCCC
Confidence 999999999999998764 45 79999999999999988642 2346778999998 788999999999999
Q ss_pred ceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHHHcCCCCCCccccCCC
Q psy6858 335 LQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGS 414 (592)
Q Consensus 335 ~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~ 414 (592)
.++++|||+|++...|.. +|+..|.|++|+|.+++++|+++ ..++++++++++++|.||||+||+ +++|+|++|+
T Consensus 297 id~i~sDh~p~~~~~k~~---~~~~~~~G~~g~e~~l~~l~~~~-~~~~lsl~~~~~~~s~npAk~lgl-~~~G~L~~G~ 371 (438)
T PRK07575 297 IDFIATDHAPHTLEEKAQ---PYPNSPSGMPGVETSLPLMLTAA-MRGKCTVAQVVRWMSTAVARAYGI-PNKGRIAPGY 371 (438)
T ss_pred CCEEecCCCCCCHHHccC---CcccCCCCcccHHHHHHHHHHHH-hcCCCCHHHHHHHHhhhHHHHcCC-CCCCccCCCC
Confidence 999999999999888763 79999999999999999999875 568899999999999999999999 6789999999
Q ss_pred CccEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEEECCEEEEECCeeeecCCCceeec
Q psy6858 415 DADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQGNYLP 479 (592)
Q Consensus 415 ~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv~GkvV~~~g~l~~~~g~g~~~~ 479 (592)
+|||||||++..++++.+.+++...|+||+|+++.|++..||++|++||++|++. .++.|+||+
T Consensus 372 ~ADlvi~D~~~~~~v~~~~~~s~~~~sp~~g~~~~G~v~~tiv~G~~v~~~g~~~-~~~~G~~~~ 435 (438)
T PRK07575 372 DADLVLVDLNTYRPVRREELLTKCGWSPFEGWNLTGWPVTTIVGGQIVFDRGQVN-TEVRGQALT 435 (438)
T ss_pred cCCEEEEcCCCCEEEchHHccccCCCCCCCCCEEeeEEEEEEECCEEEEECCEEc-cCCCceEee
Confidence 9999999999999999999999999999999999999999999999999999987 567999997
No 18
>PRK09236 dihydroorotase; Reviewed
Probab=100.00 E-value=3.1e-58 Score=498.53 Aligned_cols=438 Identities=25% Similarity=0.341 Sum_probs=372.0
Q ss_pred cccEEEEccEEEcCCCceeeEEEEECCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCcccccCCCCChhhHHHHH
Q psy6858 18 QNRLLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELELMGATSVDDFYHGT 97 (592)
Q Consensus 18 ~~~llIkng~Iv~~d~~~~~dV~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~~~~~d~~~~~~ 97 (592)
|++++|+|++|++++....++|+|+||+|++|+++...+.+.++||++|++|+|||||+|+|+..+.. ...+++.+++
T Consensus 1 ~~~~~i~~~~v~~~~~~~~~~i~i~~g~I~~i~~~~~~~~~~~~id~~g~~v~PG~ID~HvH~~~~~~--~~~e~~~~~~ 78 (444)
T PRK09236 1 MKRILIKNARIVNEGKIFEGDVLIENGRIAKIASSISAKSADTVIDAAGRYLLPGMIDDQVHFREPGL--THKGDIASES 78 (444)
T ss_pred CccEEEECCEEEcCCCceEeEEEEECCEEEEecCCCCCCCCCeEEECCCCEECCCEEEcccccccCcc--cccccHHHHH
Confidence 35789999999998777789999999999999876543346689999999999999999999976532 3457888999
Q ss_pred HHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccccccCCChHHHHHHHHHHHHcCCcEEEEEEeeC-C
Q psy6858 98 KAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYK-G 176 (592)
Q Consensus 98 ~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~Gv~~~k~~~~~~-~ 176 (592)
++++++||||++|+....+.....+.+......+.....++|+++.+.+..+ .+++.++++ .|+.+||+|+.+. +
T Consensus 79 ~aa~~~GvTtv~d~p~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~---~~e~~~l~~-~g~~g~k~~~~~~~~ 154 (444)
T PRK09236 79 RAAVAGGITSFMEMPNTNPPTTTLEALEAKYQIAAQRSLANYSFYFGATNDN---LDEIKRLDP-KRVCGVKVFMGASTG 154 (444)
T ss_pred HHHHhCCcEEEEeCCCCCCCcCcHHHHHHHHHHhccCeEEEEEEEeccCccc---HHHHHHHHH-ccCcEEEEEeccCCC
Confidence 9999999999999976555555677777777777777889999988665332 567777764 4999999998642 2
Q ss_pred CcCCCHH-HHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHc-CCC-CCCCccCCCcHHHHHHHHHHHHHHhcccCCC
Q psy6858 177 LYMLSDG-ELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAA-GIK-GPEGHQLSRPEEVEAEAVTRACTIANQVDCP 253 (592)
Q Consensus 177 ~~~~~~~-~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~-G~~-~p~~~~~s~p~~~e~eav~~~i~la~~~~~p 253 (592)
.....+. .++++ ++..+.++.+|+|+..++......+... |.. .+..|..+||++.|.+++.+++.++++.+++
T Consensus 155 ~~~~~~~~~~~~~---~~~~~~~v~~H~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~rp~~ae~~av~~~~~la~~~~~~ 231 (444)
T PRK09236 155 NMLVDNPETLERI---FRDAPTLIATHCEDTPTIKANLAKYKEKYGDDIPAEMHPLIRSAEACYKSSSLAVSLAKKHGTR 231 (444)
T ss_pred CcccCcHHHHHHH---HHhcCCEEEEecCCHHHHHHHHHHHHHhcCCCCChhhccccCCHHHHHHHHHHHHHHHHHHCCC
Confidence 2223443 34444 3556899999999988877665555544 643 5677888999999999999999999999999
Q ss_pred EEEEecccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCcccccccceecCCCCCCCCCHHHHHHHHhcC
Q psy6858 254 LYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNEN 333 (592)
Q Consensus 254 l~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G 333 (592)
+|+.|+++.++.+.+..++.+ |. .+++|+++|+|.++..++.. ....++++||+|. .+++++||++++.|
T Consensus 232 ~hi~h~st~~~~~~i~~~~~~----g~--~vt~e~~~H~l~l~~~~~~~---~~~~~~~~Pplr~-~~~~~~l~~~l~~G 301 (444)
T PRK09236 232 LHVLHISTAKELSLFENGPLA----EK--RITAEVCVHHLWFDDSDYAR---LGNLIKCNPAIKT-ASDREALRQALADD 301 (444)
T ss_pred EEEEeCCCHHHHHHHHHHHHC----CC--CEEEEEchhhhhcCHHHHhc---cCceEEECCCCCC-HHHHHHHHHHHhCC
Confidence 999999999999999999888 98 99999999999999877643 2556789999998 78999999999999
Q ss_pred CceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHHHcCCCCCCccccCC
Q psy6858 334 ALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEG 413 (592)
Q Consensus 334 ~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G 413 (592)
.++++||||+++....+.. +|...|+|+.++|..++.+|+ .+..+.++++++++++|.|||++||+ +++|+|++|
T Consensus 302 ~i~~igtDh~p~~~~~k~~---~~~~~~~G~~~~e~~l~~l~~-~v~~~~~~~~~~~~~~t~~pA~~lgl-~~~G~l~~G 376 (444)
T PRK09236 302 RIDVIATDHAPHTWEEKQG---PYFQAPSGLPLVQHALPALLE-LVHEGKLSLEKVVEKTSHAPAILFDI-KERGFIREG 376 (444)
T ss_pred CCcEEECCCCCCCHHHhcC---CcccCCCCcccHHHHHHHHHH-HHHhcCCCHHHHHHHHHHhHHHhcCC-CCCCccccC
Confidence 9999999999998777654 799999999999999999996 56678899999999999999999999 578999999
Q ss_pred CCccEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEEECCEEEEECCeeeecCCCceeecC
Q psy6858 414 SDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQGNYLPT 480 (592)
Q Consensus 414 ~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv~GkvV~~~g~l~~~~g~g~~~~~ 480 (592)
++|||||||++..++++.+.+.+...|+||+|+++.|.|.+||++|++||++|++.... .|+++++
T Consensus 377 ~~ADlvi~d~~~~~~~~~~~~~s~~~~sp~~g~~~~g~v~~t~v~G~~v~~~g~~~~~~-~G~~~~~ 442 (444)
T PRK09236 377 YWADLVLVDLNSPWTVTKENILYKCGWSPFEGRTFRSRVATTFVNGQLVYHNGQLVESC-RGQRLEF 442 (444)
T ss_pred CcCCEEEEcCCCCEEEchHHhcccCCCCCCCCCEEeeeEEEEEECCEEEEECCEEccCc-CceEeec
Confidence 99999999999999999999999999999999999999999999999999999998766 9999984
No 19
>PRK02382 dihydroorotase; Provisional
Probab=100.00 E-value=3.3e-58 Score=498.15 Aligned_cols=435 Identities=28% Similarity=0.430 Sum_probs=372.0
Q ss_pred ccEEEEccEEEcCCCceeeEEEEECCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCcccccCCCCChhhHHHHHH
Q psy6858 19 NRLLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELELMGATSVDDFYHGTK 98 (592)
Q Consensus 19 ~~llIkng~Iv~~d~~~~~dV~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~~~~~d~~~~~~~ 98 (592)
.+++|+|++|++.+....++|+|+||+|++|+++...+.+.++||++|++|+|||||+|+|+..+. ....+++.++++
T Consensus 2 ~dl~i~n~~v~~~~~~~~~~v~I~dg~I~~i~~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~g--~~~~e~~~~~~~ 79 (443)
T PRK02382 2 RDALLKDGRVYYNNSLQPRDVRIDGGKITAVGKDLDGSSSEEVIDARGMLLLPGGIDVHVHFREPG--YTHKETWYTGSR 79 (443)
T ss_pred ceEEEECCEEEeCCCceEEEEEEECCEEEEecCCCCCCCCCeEEECCCCEEcCCEeeeeeeccCCC--CCchhhHHHHHH
Confidence 578999999998766678999999999999987544334568999999999999999999987653 245688999999
Q ss_pred HHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccccccCCChHHHHHHHHHHHHcCCcEE-EEEEeeC-C
Q psy6858 99 AAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSF-KTFMAYK-G 176 (592)
Q Consensus 99 ~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~Gv~~~-k~~~~~~-~ 176 (592)
+++++||||++++....+.....+.+......+...+.++|+++..... ..+++..+++. |+.++ |+|+.+. +
T Consensus 80 aa~~gGvTtv~~~~~t~p~~~~~~~~~~~~~~a~~~s~v~~~~~~~~~~----~~~~l~~l~~~-gv~~~gkv~~~~~~~ 154 (443)
T PRK02382 80 SAAAGGVTTVVDQPNTDPPTVDGESFDEKAELAARKSIVDFGINGGVTG----NWDPLESLWER-GVFALGEIFMADSTG 154 (443)
T ss_pred HHHhCCcEEEEECCCCCCCCChHHHHHHHHHHhCcCceEEEEEEeeecc----chhhHHHHHhc-CccceeEEEEEecCC
Confidence 9999999999999766555556667777777766667889988754431 24566777654 88888 8887653 3
Q ss_pred CcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCEEE
Q psy6858 177 LYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYV 256 (592)
Q Consensus 177 ~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~i 256 (592)
....+++.++++++.++++|.++.+|+++.+++..... ...|...+..+..++|...|..++.+++.+|++.++++|+
T Consensus 155 ~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~--~~~g~~~~~~~~~~~p~~~E~~av~~~~~la~~~g~~~hi 232 (443)
T PRK02382 155 GMGIDEELFEEALAEAARLGVLATVHAEDEDLFDELAK--LLKGDADADAWSAYRPAAAEAAAVERALEVASETGARIHI 232 (443)
T ss_pred CcccCHHHHHHHHHHHHhcCCeEEEecCCHHHHHHhhH--hhcCCCCHhhCCCcCCHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 34568889999999999999999999999877553322 2347777888888899999999999999999999999999
Q ss_pred EecccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCcccccccceecCCCCCCCCCHHHHHHHHhcCCce
Q psy6858 257 VHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQ 336 (592)
Q Consensus 257 ~hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~ 336 (592)
.|+++..+.+.++++ .|++|+|+++|.++..++.. ....++++||+|. .+++++||+.+++|.++
T Consensus 233 ~h~ss~~~~~~i~~~-----------~vt~ev~ph~L~l~~~~~~~---~~~~~k~~PPlr~-~~d~~aL~~~l~~g~i~ 297 (443)
T PRK02382 233 AHISTPEGVDAARRE-----------GITCEVTPHHLFLSRRDWER---LGTFGKMNPPLRS-EKRREALWERLNDGTID 297 (443)
T ss_pred EECCCHHHHHHHHHC-----------CcEEEEchhhhhcCHHHHhc---cCceEEEcCCCCC-hHHHHHHHHHHhCCCCC
Confidence 999999999988643 48999999999999887632 2335679999998 68899999999999999
Q ss_pred EEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCCc
Q psy6858 337 TTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDA 416 (592)
Q Consensus 337 ~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~A 416 (592)
+++|||+|++..+|.. +|+..|.|++|+|..++++|. ++..++++++++++++|.|||++||+ +++|+|++|++|
T Consensus 298 ~i~sDh~P~~~~~K~~---~~~~~~~G~~g~e~~~~~~~~-~~~~~~~~l~~~~~~~t~~pA~~~g~-~~~G~l~~G~~A 372 (443)
T PRK02382 298 VVASDHAPHTREEKDA---DIWDAPSGVPGVETMLPLLLA-AVRKNRLPLERVRDVTAANPARIFGL-DGKGRIAEGYDA 372 (443)
T ss_pred EEEcCCCCCCHHHhcC---ChhhCCCCcccHHHHHHHHHH-HHHcCCCCHHHHHHHHhHHHHHHcCC-CCCCccCCCCcC
Confidence 9999999999888864 799999999999999999995 77888999999999999999999999 688999999999
Q ss_pred cEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEEECCEEEEECCeeeecCCCceeecCCCC
Q psy6858 417 DIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQGNYLPTHTN 483 (592)
Q Consensus 417 DlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv~GkvV~~~g~l~~~~g~g~~~~~~~~ 483 (592)
||+|||++..+.++.+.+++...++||+|++.. .|.+||++|++||++|++....|.|+|++++.|
T Consensus 373 D~vi~d~~~~~~~~~~~~~s~~~~sp~~g~~~~-~v~~tiv~G~~v~~~~~~~~~~~~G~~~~~~~~ 438 (443)
T PRK02382 373 DLVLVDPDAAREIRGDDLHSKAGWTPFEGMEGV-FPELTMVRGTVVWDGDDINAKRGRGEFLRGRGY 438 (443)
T ss_pred CEEEEcCCCcEEEcHHHhcccCCCCCcCCCEec-eEEEEEECCEEEEECCEEecCCCCceEeCCccc
Confidence 999999999999999999999999999999877 899999999999999999877789999999655
No 20
>PRK01211 dihydroorotase; Provisional
Probab=100.00 E-value=1.5e-58 Score=491.57 Aligned_cols=401 Identities=22% Similarity=0.308 Sum_probs=340.5
Q ss_pred EEccEEEcCCCceeeEEEEECCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCcccccCCCCChhhHHHHHHHHHc
Q psy6858 23 IKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELELMGATSVDDFYHGTKAAVA 102 (592)
Q Consensus 23 Ikng~Iv~~d~~~~~dV~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~~~~~d~~~~~~~~ala 102 (592)
|+|. +++++....+||+|+||+|++|+++.. +.++||++| +|+||+||+|+|+..|. ....++|.+++++|++
T Consensus 3 ~~~~-~~~~~~~~~~di~I~dGkI~~i~~~~~---~~~~ida~g-~vlPG~ID~HvH~r~pg--~~~ked~~s~s~AAaa 75 (409)
T PRK01211 3 ICGN-FYYKGKFDYLEIEVEDGKIKSIKKDAG---NIGKKELKG-AILPAATDIHVHFRTPG--ETEKEDFSTGTLSAIF 75 (409)
T ss_pred eece-eEEcCcEEEEEEEEECCEEEEecCCCC---CceEEEecc-EEcCCeEEeeeccCCCC--CcccCcHHHHHHHHHc
Confidence 4444 455556678999999999999987652 568999999 99999999999998884 4578999999999999
Q ss_pred CCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccccccCCChHHHHHHHHHHHHcCCcEEEEEEeeCC---CcC
Q psy6858 103 GGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKG---LYM 179 (592)
Q Consensus 103 ~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~Gv~~~k~~~~~~~---~~~ 179 (592)
||||||+||.+..+..+..+.+..+.+.+...++++|++|..++.++. ++. +.|+.+||+|+.+.. ...
T Consensus 76 GGvTtv~dmPnt~P~~~~~e~~~~~~~~a~~~s~vd~~~~~~~~~~~~----~~~----~~g~~~~k~f~~~~~~~~~~~ 147 (409)
T PRK01211 76 GGTTFIMDMPNNNIPIKDYNAFSDKLGRVAPKAYVDFSLYSMETGNNA----LIL----DERSIGLKVYMGGTTNTNGTD 147 (409)
T ss_pred CCcEEEEECCCCCCCCChHHHHHHHHHHhccCceeeEEEEeccCCchh----hHH----hccCcEEEEEcCCCcCCCccc
Confidence 999999999876667778889999999988889999999988754432 222 239999999986421 111
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCEEEEec
Q psy6858 180 LSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHI 259 (592)
Q Consensus 180 ~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~i~hv 259 (592)
..+ +.++.++++|.++.+|+|+.+++...... .+ ....|..++|...|.+++.+.+.++.+ ++|++|+
T Consensus 148 ~~~----~~l~~~~~~g~~v~~H~E~~~l~~~~~~~---~~--~~~~~~~~rP~~aE~~ai~~~~~la~~---~~hi~Hv 215 (409)
T PRK01211 148 IEG----GEIKKINEANIPVFFHAELSECLRKHQFE---SK--NLRDHDLARPIECEIKAVKYVKNLDLK---TKIIAHV 215 (409)
T ss_pred cCH----HHHHHHHccCCEEEEeccChHHhhhhhhC---cc--hHhhCCCCCCHHHHHHHHHHHHHHhCC---CcEEEEe
Confidence 222 35566778999999999998876543211 11 234577889999999999999999987 6999999
Q ss_pred ccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCcccccccceecCCCCCCCCCHHHHHHHHhcCCceEEe
Q psy6858 260 MSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTG 339 (592)
Q Consensus 260 ~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~~~g 339 (592)
++.++. . .|++|+|+|||.++..+. ....++++||||. .+++++||+.+..|...+++
T Consensus 216 St~~~~--------~--------~vt~Ev~phhL~l~~~~~-----~~~~~kvnPPLRs-~~d~~aL~~~l~dG~ID~i~ 273 (409)
T PRK01211 216 SSIDVI--------G--------RFLREVTPHHLLLNDDMP-----LGSYGKVNPPLRD-RWTQERLLEEYISGRFDILS 273 (409)
T ss_pred cChhhc--------C--------ceEEEecHHHHccccccc-----cCCceeEcCCCCC-HHHHHHHHHHHhCCCCCEEe
Confidence 998744 1 799999999999998762 3456889999998 79999999999999999999
Q ss_pred CCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCCccEE
Q psy6858 340 SDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIV 419 (592)
Q Consensus 340 sD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlV 419 (592)
|||+|+...+| ++|+..|+|++|+|..++++|+ ++..++|+++++++++|+||||+||+ + +|+|++|++||||
T Consensus 274 SDHaP~~~~eK----~~~~~a~~G~~gle~~lpl~~~-~v~~~~isl~~~v~~~s~nPAki~gl-~-kG~l~~G~~ADlv 346 (409)
T PRK01211 274 SDHAPHTEEDK----QEFEYAKSGIIGVETRVPLFLA-LVKKKILPLDVLYKTAIERPASLFGI-K-KGKIEEGYDADFM 346 (409)
T ss_pred CCCCCCChhHh----CCHhhCCCCCCcHHHHHHHHHH-HHHcCCCCHHHHHHHHHHHHHHHhCC-C-CCcccCCCcCCEE
Confidence 99999987776 3799999999999999999996 78899999999999999999999999 4 8999999999999
Q ss_pred EEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEEECCEEEEECCeeeecCCCceeecCC
Q psy6858 420 VWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQGNYLPTH 481 (592)
Q Consensus 420 v~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv~GkvV~~~g~l~~~~g~g~~~~~~ 481 (592)
|||++..++++.+.+++...|+||+|+++. +|..||++|++||++|++.... .|+|+++.
T Consensus 347 i~D~~~~~~v~~~~~~s~~~~spf~G~~~~-~v~~tiv~G~~v~~~~~~~~~~-~G~~~~~~ 406 (409)
T PRK01211 347 AFDFTNIKKINDKRLHSKCPVSPFNGFDAI-FPSHVIMRGEVVIDNYELISER-TGKFVPKG 406 (409)
T ss_pred EEcCCCeEEEChHHhhccCCCCCCCCCEec-cEEEEEECCEEEEECCEEcccc-CceEeccC
Confidence 999999999999999999999999999988 9999999999999999988766 99999874
No 21
>PRK08417 dihydroorotase; Provisional
Probab=100.00 E-value=1.6e-56 Score=476.10 Aligned_cols=384 Identities=20% Similarity=0.249 Sum_probs=329.4
Q ss_pred EEEECCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCcccccCCCCChhhHHHHHHHHHcCCeeEEeccccCCCCc
Q psy6858 39 IYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGE 118 (592)
Q Consensus 39 V~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~~~~~d~~~~~~~~ala~GtTti~d~~~~~~~~ 118 (592)
|+|+||+|++|+++. .+.++||++|++|+|||||+|+|+..+.. ..+++.+++++|+++|||||+||....+..
T Consensus 1 i~I~dG~I~~i~~~~---~~~~viDa~g~~vlPG~ID~HvH~~~~~~---~~e~~~t~s~aA~aGGvTtv~dmpnt~P~~ 74 (386)
T PRK08417 1 IRIKDGKITEIGSDL---KGEEILDAKGKTLLPALVDLNVSLKNDSL---SSKNLKSLENECLKGGVGSIVLYPDSTPAI 74 (386)
T ss_pred CEEECCEEEEecCCC---CCCeEEECCCCEEccCeeEEeeeeCCCCc---ChhhHHHHHHHHHcCCcEEEEeCCCCCCCC
Confidence 689999999999764 36799999999999999999999976542 358999999999999999999997655554
Q ss_pred cHHHHHHHHHHHhcc--CceeeeeccccccCCChHHHHHHHHHHHHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcC
Q psy6858 119 SLIKTYESWRQKADE--KVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLG 196 (592)
Q Consensus 119 ~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g 196 (592)
+..+.+....+.+.. ...+++.. ++. .++..+++..++ +.|+.+||.+. ..++..++++++.++++|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~i~~l~-~~Gv~~~k~~~------~~~~~~l~~~~~~a~~~g 143 (386)
T PRK08417 75 DNEIALELINSAQRELPMQIFPSIR---ALD-EDGKLSNIATLL-KKGAKALELSS------DLDANLLKVIAQYAKMLD 143 (386)
T ss_pred CCHHHHHHHHHHhhccCCcEEEEEE---EEC-CCccHHHHHHHH-HCCCEEEECCC------CCCHHHHHHHHHHHHHcC
Confidence 445555555554443 34566633 322 333467788875 46999887531 468889999999999999
Q ss_pred CeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCEEEEecccHHHHHHHHHHHHHHH
Q psy6858 197 AIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIMSKAAGDAMAYKRKELM 276 (592)
Q Consensus 197 ~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~i~hv~s~~a~~~i~~ar~~~~ 276 (592)
.++.+|+|+..++.. .....|....+.+..++|...|..++.+++.++++.+|++|++|+++.++.+.|+.+|++
T Consensus 144 ~~V~~HaEd~~~~~~---~~~~~g~~~~~~~~~~rp~~aE~~~v~~~~~la~~~~~~lhi~hvS~~~~~~~i~~ak~~-- 218 (386)
T PRK08417 144 VPIFCRCEDSSFDDS---GVMNDGELSFELGLPGIPSIAETKEVAKMKELAKFYKNKVLFDTLALPRSLELLDKFKSE-- 218 (386)
T ss_pred CEEEEeCCCHHHhhH---HHHhcChhhHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHC--
Confidence 999999999877654 355667777888888999999999999999999999999999999999999999999998
Q ss_pred hcCCceeeeeecccceeecCCCCCCCcccccccceecCCCCCCCCCHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCC
Q psy6858 277 KKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDS 356 (592)
Q Consensus 277 ~~G~~~~v~~e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~ 356 (592)
|+ .|++|+|++||.++..++.. ....+.++||||. .+++++||+.+.+|.+++++|||+|++..+|.. +
T Consensus 219 --g~--~vt~ev~ph~L~l~~~~~~~---~~~~~k~~PPlR~-~~d~~~L~~~l~~g~Id~i~SDHaP~~~~~K~~---~ 287 (386)
T PRK08417 219 --GE--KLLKEVSIHHLILDDSACEN---FNTAAKLNPPLRS-KEDRLALLEALKEGKIDFLTSLHSAKSNSKKDL---A 287 (386)
T ss_pred --CC--CEEEEechHHHeeCHHHhcC---cCcccEECCCCCC-HHHHHHHHHHHhcCCceEEEcCCCCCCHHHccC---C
Confidence 99 99999999999999987632 2346789999998 799999999999999999999999999887753 7
Q ss_pred CCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccc
Q psy6858 357 FTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAH 436 (592)
Q Consensus 357 f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~ 436 (592)
|+..|.|++|+|..++++|..++..+++++.++++++|.|||++||+ ++ |+|++|++|||++||++..+.++.
T Consensus 288 ~~~a~~G~~g~e~~~~~~~~~~v~~~~~~~~~~~~~~t~~pA~~lgl-~~-G~l~~G~~ADlvi~d~~~~~~~~~----- 360 (386)
T PRK08417 288 FDEAAFGIDSICEYFSLCYTYLVKEGIITWSELSRFTSYNPAQFLGL-NS-GEIEVGKEADLVLFDPNESTIIDD----- 360 (386)
T ss_pred HhHCCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCC-CC-CccCCCCcCCEEEEcCCCCeEeCC-----
Confidence 99999999999999999999899999999999999999999999999 43 999999999999999998888763
Q ss_pred cCCCCcccCeEEeeeeeEEEECCEEEEE
Q psy6858 437 ACDYNIFEGLVCHGVPEYVIVGGRVCVD 464 (592)
Q Consensus 437 ~~~~~~~~g~~~~g~~~~Viv~GkvV~~ 464 (592)
.|+||+|+.+.|.|..||++|++||+
T Consensus 361 --~~~p~~g~~~~g~v~~tiv~G~~v~~ 386 (386)
T PRK08417 361 --NFSLYSGDELYGKIEAVIIKGKLYLE 386 (386)
T ss_pred --CCCCccCCEEeccEEEEEECCEEEeC
Confidence 48999999999999999999999985
No 22
>PRK09357 pyrC dihydroorotase; Validated
Probab=100.00 E-value=5.3e-56 Score=479.36 Aligned_cols=421 Identities=24% Similarity=0.360 Sum_probs=357.9
Q ss_pred ccEEEEccEEEcCC-CceeeEEEEECCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCcccccCCCCChhhHHHHH
Q psy6858 19 NRLLIKNGKVVNAD-KISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELELMGATSVDDFYHGT 97 (592)
Q Consensus 19 ~~llIkng~Iv~~d-~~~~~dV~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~~~~~d~~~~~~ 97 (592)
|+++|+|++|++++ ...+++|+|+||+|.+|++... +.+.++||++|++|+|||||+|+|+..+ +....++++.++
T Consensus 1 ~~~~i~~~~v~~~~~~~~~~~I~I~dg~I~~i~~~~~-~~~~~~iD~~g~~v~PG~ID~H~H~~~~--~~~~~e~~~~~~ 77 (423)
T PRK09357 1 MMILIKNGRVIDPKGLDEVADVLIDDGKIAAIGENIE-AEGAEVIDATGLVVAPGLVDLHVHLREP--GQEDKETIETGS 77 (423)
T ss_pred CcEEEEeEEEECCCCCcceeeEEEECCEEEEeeCCCC-CCCCeEEECCCCEEeCCEEecccccCCC--CccccccHHHHH
Confidence 46899999999874 4557999999999999987532 2356899999999999999999998665 346778999999
Q ss_pred HHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccccccCC-ChHHHHHHHHHHHHcCCcEEEEEEeeCC
Q psy6858 98 KAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVGITWW-SDQVQQEMAELCEKHGVNSFKTFMAYKG 176 (592)
Q Consensus 98 ~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~lv~~~Gv~~~k~~~~~~~ 176 (592)
++++++||||++|+....+.....+.++...+.+.....+++..+..+... .....+++.++.+ .|+..|+ .++
T Consensus 78 ~~a~~~GvTt~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gv~~~~----~~~ 152 (423)
T PRK09357 78 RAAAAGGFTTVVAMPNTKPVIDTPEVVEYVLDRAKEAGLVDVLPVGAITKGLAGEELTEFGALKE-AGVVAFS----DDG 152 (423)
T ss_pred HHHHhCCCeEEEecCCCCCCCCcHHHHHHHHHHhccCCcccEEEEEEEEeCCCCccHHHHHHHHh-CCcEEEE----CCC
Confidence 999999999999998766666667777777777666666777776554322 2234566666654 5775554 334
Q ss_pred CcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCEEE
Q psy6858 177 LYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYV 256 (592)
Q Consensus 177 ~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~i 256 (592)
.+..+++.|+++++.++++|.++++|+++..+... .+...|......+..++|...|..++.+.+.+|++.++++|+
T Consensus 153 ~~~~~~~~l~~~~~~a~~~g~~v~iH~ee~~~~~~---~~~~~g~~~~~~~~~~~p~~~E~~~i~~~~~la~~~g~~~hi 229 (423)
T PRK09357 153 IPVQDARLMRRALEYAKALDLLIAQHCEDPSLTEG---GVMNEGEVSARLGLPGIPAVAEEVMIARDVLLAEATGARVHI 229 (423)
T ss_pred cccCCHHHHHHHHHHHHhcCCEEEEeCCCHHHhhc---ccccCChhhHHhCCCCCCHHHHHHHHHHHHHHHHHHCCcEEE
Confidence 55678889999999999999999999998765443 234455555566677889999999999999999999999999
Q ss_pred EecccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCcccccccceecCCCCCCCCCHHHHHHHHhcCCce
Q psy6858 257 VHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQ 336 (592)
Q Consensus 257 ~hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~ 336 (592)
.|+++.+..+.++.++++ |+ .|++|+++++|.++...+.. ....++++||+|. .+++++||+++++|..+
T Consensus 230 ~H~s~~~~~~~i~~a~~~----g~--~v~~e~~ph~L~~~~~~~~~---~~~~~k~~Pplr~-~~~~~~l~~~l~~G~~~ 299 (423)
T PRK09357 230 CHVSTAGSVELIRWAKAL----GI--KVTAEVTPHHLLLTDEDLLT---YDPNYKVNPPLRT-EEDREALIEGLKDGTID 299 (423)
T ss_pred EeCCCHHHHHHHHHHHHc----CC--CEEEEechHHheEcHHHHhC---cCCceEECCCCCC-HHHHHHHHHHHHcCCCe
Confidence 999999999999999998 99 99999999999999987642 2345779999997 67899999999999999
Q ss_pred EEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCCc
Q psy6858 337 TTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDA 416 (592)
Q Consensus 337 ~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~A 416 (592)
++||||+|++..+|.. +|...|.|++|+|..++.+|.+++..+.++++++++++|.|||++||++ . |+|++|++|
T Consensus 300 ~i~sDh~p~~~~~k~~---~~~~~~~G~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~t~~~A~~~g~~-~-G~i~~G~~A 374 (423)
T PRK09357 300 AIATDHAPHAREEKEC---EFEAAPFGITGLETALSLLYTTLVKTGLLDLEQLLEKMTINPARILGLP-A-GPLAEGEPA 374 (423)
T ss_pred EEecCCCCCChHHccC---CHhhCCCCceEHHHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCC-C-CccCCCCcC
Confidence 9999999999887764 6999999999999999999988888889999999999999999999995 4 999999999
Q ss_pred cEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEEECCEEEEEC
Q psy6858 417 DIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDE 465 (592)
Q Consensus 417 DlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv~GkvV~~~ 465 (592)
||+|+|++..++++.+.+++...|+||+|++++|+|..||++|++||+|
T Consensus 375 D~~i~d~~~~~~v~~~~~~~~~~~~p~~g~~~~g~v~~t~v~G~~v~~~ 423 (423)
T PRK09357 375 DLVIFDPEAEWTVDGEDFASKGKNTPFIGMKLKGKVVYTIVDGKIVYQD 423 (423)
T ss_pred CEEEEcCCCCEEEchhhcccCCCCCCCcCCEEeeEEEEEEECCEEEecC
Confidence 9999999999999988899999999999999999999999999999975
No 23
>TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type. All proteins described by this model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase.
Probab=100.00 E-value=2.5e-55 Score=471.21 Aligned_cols=408 Identities=27% Similarity=0.398 Sum_probs=353.3
Q ss_pred ceeeEEEEECCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCcccccCCCCChhhHHHHHHHHHcCCeeEEecccc
Q psy6858 34 ISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELELMGATSVDDFYHGTKAAVAGGTTTIIDFAL 113 (592)
Q Consensus 34 ~~~~dV~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~~~~~d~~~~~~~~ala~GtTti~d~~~ 113 (592)
...++|+|+||+|++|++.. .+.+.++||++|++|+|||||+|+|+..+ +....+++.+.+++++++||||++++..
T Consensus 3 ~~~~~v~I~~g~I~~i~~~~-~~~~~~~ida~g~~v~PG~ID~H~H~~~~--~~~~~~~~~~~~~~~~~~GvTtv~~~~~ 79 (411)
T TIGR00857 3 ETEVDILVEGGRIKKIGKLR-IPPDAEVIDAKGLLVLPGFIDLHVHLRDP--GEEYKEDIESGSKAAAHGGFTTVADMPN 79 (411)
T ss_pred eEEEEEEEECCEEEEeeccC-CCCCCeEEECCCCEEecCEEEcccCCCCC--CCccHhHHHHHHHHHHhCCeEEEEEecC
Confidence 45789999999999998522 23456899999999999999999999743 2346788999999999999999999987
Q ss_pred CCCCccHHHHHHHHHHHhccCceeeeeccccccCCChH-HHHHHHHHHHHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHH
Q psy6858 114 PRKGESLIKTYESWRQKADEKVCCDYALHVGITWWSDQ-VQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAI 192 (592)
Q Consensus 114 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lv~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a 192 (592)
..+.....+.+....+.....++++|.++..++.+... ..+++.++.. .|+.+ ++|..+ .....++..++++++.+
T Consensus 80 t~p~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~~~~l~e~~~l~~-~Gv~g-~~f~~~-~~~~~~~~~l~~~~~~a 156 (411)
T TIGR00857 80 TKPPIDTPETLEWKLQRLKKVSLVDVHLYGGVTQGNQGKELTEAYELKE-AGAVG-RMFTDD-GSEVQDILSMRRALEYA 156 (411)
T ss_pred CCCCCCcHHHHHHHHHHhccCCcccEEEEEEEecCCccccHHHHHHHHH-CCcEE-EEEEeC-CcccCCHHHHHHHHHHH
Confidence 66666777888888888877789999999888765432 4566776653 58887 333332 22346888999999999
Q ss_pred HHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCEEEEecccHHHHHHHHHHH
Q psy6858 193 KNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIMSKAAGDAMAYKR 272 (592)
Q Consensus 193 ~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~i~hv~s~~a~~~i~~ar 272 (592)
+++|+++.+|+|+.+++... ....|...++.|..++|+..|.+++.+.+.+++..+||+|++|+++.++++.|+.+|
T Consensus 157 ~~~g~~v~iH~E~~~l~~~~---~~~~g~~~~~~~~~~~p~~aE~~ai~~~~~la~~~~~~~~i~Hvs~~~~l~~i~~a~ 233 (411)
T TIGR00857 157 AIAGVPIALHAEDPDLIYGG---VMHEGPSAAQLGLPARPPEAEEVAVARLLELAKHAGCPVHICHISTKESLELIVKAK 233 (411)
T ss_pred HHcCCEEEEecCCHHHHhhh---hhcCCcccHhhCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHHHH
Confidence 99999999999998876544 566688888999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCceeeeeecccceeecCCCCCCCcccccccceecCCCCCCCCCHHHHHHHHhcCCceEEeCCCCCCChhhhhc
Q psy6858 273 KELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKEL 352 (592)
Q Consensus 273 ~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~ 352 (592)
++ |+ .|++|+|++||.++..++.. ....++++||+|. .+++++||+++..|..++++|||+|+...+|..
T Consensus 234 ~~----g~--~v~~ev~ph~L~~~~~~~~~---~~~~~k~~Pplr~-~~~~~~L~~~l~~g~i~~i~sDh~p~~~~~k~~ 303 (411)
T TIGR00857 234 SQ----GI--KITAEVTPHHLLLSEEDVAR---LDGNGKVNPPLRE-KEDRLALIEGLKDGIIDIIATDHAPHTLEEKTK 303 (411)
T ss_pred Hc----CC--cEEEeechhhheecHHHHhC---CCccEEEcCCCCC-HHHHHHHHHHHhcCCCcEEEcCCCCCChHHccC
Confidence 99 99 99999999999999877643 3456789999998 688999999999999999999999999877653
Q ss_pred CCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCC
Q psy6858 353 GKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAK 432 (592)
Q Consensus 353 g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~ 432 (592)
+|...|.|++|+|..++.+|+.+ ..+++++.++++++|.|||++||+ +++|+|++|++|||||||++..++++.+
T Consensus 304 ---~~~~~~~G~~g~e~~~~~~~~~~-~~~~~~~~~~~~~~t~~pa~~~g~-~~~G~l~~G~~ADlvi~d~~~~~~~~~~ 378 (411)
T TIGR00857 304 ---EFAAAPPGIPGLETALPLLLQLL-VKGLISLKDLIRMLSINPARIFGL-PDKGTLEEGNPADITVFDLKKEWTINAE 378 (411)
T ss_pred ---CHhhCCCCceeHHHHHHHHHHHH-HhCCCCHHHHHHHHhHHHHHHhCC-CCCCccCCCCcCCEEEEcCCCCEEEchH
Confidence 79999999999999999999754 456899999999999999999999 5569999999999999999999999988
Q ss_pred cccccCCCCcccCeEEeeeeeEEEECCEEEEEC
Q psy6858 433 THAHACDYNIFEGLVCHGVPEYVIVGGRVCVDE 465 (592)
Q Consensus 433 ~~~~~~~~~~~~g~~~~g~~~~Viv~GkvV~~~ 465 (592)
.+.+...|+||+|+++.|+|..||++|++||+|
T Consensus 379 ~~~~~~~~sp~~g~~~~g~v~~tiv~G~~v~~~ 411 (411)
T TIGR00857 379 TFYSKAKNTPFEGMSLKGKPIATILRGKVVYED 411 (411)
T ss_pred HCccCCCCCCcCCCEEEeEEEEEEECCEEEecC
Confidence 889999999999999999999999999999986
No 24
>PRK04250 dihydroorotase; Provisional
Probab=100.00 E-value=2.1e-54 Score=459.90 Aligned_cols=394 Identities=25% Similarity=0.336 Sum_probs=328.6
Q ss_pred ccEEEcCCCceeeEEEEECCEEEEeec-CCCCCCCCeEEecCCCEEeeCccccCcCcccccCCCCChhhHHHHHHHHHcC
Q psy6858 25 NGKVVNADKISDLDIYIENGVIQQLGR-NLIVPGGVRVIDAAGSYVIPGGIDPHTHFELELMGATSVDDFYHGTKAAVAG 103 (592)
Q Consensus 25 ng~Iv~~d~~~~~dV~I~dG~I~~Ig~-~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~~~~~d~~~~~~~~ala~ 103 (592)
+++|++++...+++|+|+||+|.+|++ .. .+.++||++|++|+|||||+|+|+..+. ....+++.+++++++++
T Consensus 3 ~~~v~~~~~~~~~~i~i~~G~I~~i~~~~~---~~~~~iD~~g~~v~PG~ID~HvH~~~~~--~~~~e~~~~~~~aa~~g 77 (398)
T PRK04250 3 EGKFLLKGRIVEGGIGIENGRISKISLRDL---KGKEVIKVKGGIILPGLIDVHVHLRDFE--ESYKETIESGTKAALHG 77 (398)
T ss_pred eEEEEECCcEEEEEEEEECCEEEEeeCCCC---CCCeEEECCCCEEccCEEeccccccCCC--CCcHHHHHHHHHHHHhC
Confidence 578888877778999999999999984 22 3568999999999999999999995432 35678999999999999
Q ss_pred CeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccccccCCChHHHHHHHHHHHHcCCcEEEEEEeeCCCcCCCHH
Q psy6858 104 GTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDG 183 (592)
Q Consensus 104 GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~Gv~~~k~~~~~~~~~~~~~~ 183 (592)
||||++|+....+.....+.+..+...+..+++++|+++. +...+ .+++.++.. .++|.|+.+.... +..+
T Consensus 78 GvTtv~~~p~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~~~---~~~l~~l~~----~~~k~f~~~~~~~-~~~~ 148 (398)
T PRK04250 78 GITLVFDMPNTKPPIMDEKTYEKRMRIAEKKSYADYALNF-LIAGN---CEKAEEIKA----DFYKIFMGASTGG-IFSE 148 (398)
T ss_pred CeEEEEECCCCCCCCCcHHHHHHHHHHhCcCceeeEEEEE-ecCCC---HHHHHHHHh----hheEEEEecCCCc-hhHH
Confidence 9999999987666667788888888888888999999998 54332 334555532 2578887653221 2222
Q ss_pred HHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCEEEEecccHH
Q psy6858 184 ELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIMSKA 263 (592)
Q Consensus 184 ~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~i~hv~s~~ 263 (592)
.+... ..+.+..+.+|+|+.+++. ...++|...|.+++.+++.++++.++++|++|+++.+
T Consensus 149 ~~~~~---~~~~~~~v~~H~E~~~~~~----------------~~~~~p~~aE~~av~r~~~la~~~~~~lhi~HvSt~~ 209 (398)
T PRK04250 149 NFEVD---YACAPGIVSVHAEDPELIR----------------EFPERPPEAEVVAIERALEAGKKLKKPLHICHISTKD 209 (398)
T ss_pred HHHHH---HHhcCCeEEEEecChhhhh----------------cccCCCHHHHHHHHHHHHHHHHHhCCCEEEEeCCCHH
Confidence 22221 2333567999999987643 1247899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcee-eeeecccceeecCCCCCCCcccccccceecCCCCCCCCCHHHHHHHHhcCCceEEeCCC
Q psy6858 264 AGDAMAYKRKELMKKGKHCT-LYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDN 342 (592)
Q Consensus 264 a~~~i~~ar~~~~~~G~~~~-v~~e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~~~gsD~ 342 (592)
+.+.|+. . |+ . |++|+|++||.++..++ . ....++++||||. .+++++||+.+. ..++++|||
T Consensus 210 ~~~~i~~---~----g~--~~vt~Ev~ph~L~l~~~~~-~---~~~~~k~~PPLR~-~~d~~aL~~~l~--~Id~i~sDH 273 (398)
T PRK04250 210 GLKLILK---S----NL--PWVSFEVTPHHLFLTRKDY-E---RNPLLKVYPPLRS-EEDRKALWENFS--KIPIIASDH 273 (398)
T ss_pred HHHHHHH---c----CC--CcEEEEeCHHHhccCHHHH-C---CCCceEEcCCCCC-HHHHHHHHHhhc--cCCEEEcCC
Confidence 9998843 4 87 7 99999999999999887 2 3457889999998 789999999996 499999999
Q ss_pred CCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCCccEEEEe
Q psy6858 343 CTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWN 422 (592)
Q Consensus 343 ~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d 422 (592)
+|++...|.. .|+|++|+|..++++|. ++..+.|+++++++++|.|||++||+ +++| |++|++|||||||
T Consensus 274 aP~~~~~k~~-------~~~G~~g~e~~lpl~~~-~v~~~~lsl~~~v~~~t~npAk~lgl-~~~G-L~~G~~ADlvi~D 343 (398)
T PRK04250 274 APHTLEDKEA-------GAAGIPGLETEVPLLLD-AANKGMISLFDIVEKMHDNPARIFGI-KNYG-IEEGNYANFAVFD 343 (398)
T ss_pred cccCHHHhhc-------CCCCcchHHHHHHHHHH-HHHhcCCCHHHHHHHHHHHHHHHhCC-CCcC-ccCCCcCCEEEEc
Confidence 9999877642 47999999999999996 68889999999999999999999999 6789 9999999999999
Q ss_pred CCceEEecCCcccccCCCCcccCeEEeeeeeEEEECCEEEEECCeeeecCCCceee
Q psy6858 423 YKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQGNYL 478 (592)
Q Consensus 423 ~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv~GkvV~~~g~l~~~~g~g~~~ 478 (592)
++..++++.+.+++...|+||+|+++.|+|..||++|++||++|++.... .|+++
T Consensus 344 ~~~~~~v~~~~~~s~~~~sp~~g~~l~g~v~~tiv~G~~v~~~g~~~~~~-~G~~~ 398 (398)
T PRK04250 344 MKKEWTIKAEELYTKAGWTPYEGFKLKGKVIMTILRGEVVMEDDEIIGKP-RGVRI 398 (398)
T ss_pred CCCcEEEChhhccccCCCCCCCCCEEeeEEEEEEECCEEEEECCEEcCCC-CCeEC
Confidence 99999999999999999999999999999999999999999999986544 77764
No 25
>PRK00369 pyrC dihydroorotase; Provisional
Probab=100.00 E-value=9.4e-54 Score=452.41 Aligned_cols=389 Identities=20% Similarity=0.229 Sum_probs=322.2
Q ss_pred ccEEEEccEEEcCCCceeeEEEEECCEEEEeecCCCCCCCCeEEec-CCCEEeeCccccCcCcccccCCCCChhhHHHHH
Q psy6858 19 NRLLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDA-AGSYVIPGGIDPHTHFELELMGATSVDDFYHGT 97 (592)
Q Consensus 19 ~~llIkng~Iv~~d~~~~~dV~I~dG~I~~Ig~~~~~~~~~~vIDa-~G~~V~PG~ID~HtH~~~~~~~~~~~d~~~~~~ 97 (592)
|.++|+|..+++ +..|.+++|+|..|++.. +.+.++||+ +|++|+|||||+|+|+..|. ....++|++++
T Consensus 1 ~~~~i~g~~~~~-----~~~~~~~~~~~~~i~~~~--~~~~~~id~~~G~~vlPG~ID~HvH~r~pg--~~~~ed~~sgs 71 (392)
T PRK00369 1 MILWIKGKAYLG-----KEIKEICINFDRRIKEIK--SRCKPDLDLPQGTLILPGAIDLHVHLRGLK--LSYKEDVASGT 71 (392)
T ss_pred CcEEEECCcccC-----CceEEEeeeeeeeEeecc--CCCCceeecCCCCEEeCCEEEcccccCCCC--CcccccHHHHH
Confidence 567888553332 356788889998888752 447889999 69999999999999998874 45789999999
Q ss_pred HHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccccccCCChHHHHHHHHHHHHcCCcEEEEEEeeCCC
Q psy6858 98 KAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGL 177 (592)
Q Consensus 98 ~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~Gv~~~k~~~~~~~~ 177 (592)
++|++||||||+||....+..+..+.++.+.+.+..+++++|++|..++... +++.+ .|+.+||.|+. +
T Consensus 72 ~AAa~GGvTtv~~mPnt~P~~~~~~~l~~~~~~a~~~~~vd~~~~~~~~~~~----~el~~----~~~~g~k~f~~--~- 140 (392)
T PRK00369 72 SEAAYGGVTLVADMPNTIPPLNTPEAITEKLAELEYYSRVDYFVYSGVTKDP----EKVDK----LPIAGYKIFPE--D- 140 (392)
T ss_pred HHHHhCCcEEEEECCCCCCCCChHHHHHHHHHHhCcCCeEEEEEEeeccCCH----HHHHH----hhCceEEEECC--C-
Confidence 9999999999999987777778889999999999988999999998764422 23432 37889998852 1
Q ss_pred cCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCEEEE
Q psy6858 178 YMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVV 257 (592)
Q Consensus 178 ~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~i~ 257 (592)
..+ .++++.+.+.+.++.+|+|+.+++... +..++|...|.+++.+++.+ +|+|++
T Consensus 141 --~~~---~~~~~~~~~~~~~v~~HaE~~~l~~~~--------------~~~~rp~~aE~~ai~~~~~~-----~~lhi~ 196 (392)
T PRK00369 141 --LER---EETFRVLLKSRKLKILHPEVPLALKSN--------------RKLRRNCWYEIAALYYVKDY-----QNVHIT 196 (392)
T ss_pred --Cch---HHHHHHHHHhCCEEEEeCCCHHHhhcc--------------hhcccCHHHHHHHHHHHHHh-----CCEEEE
Confidence 122 234444555669999999998765421 23468888998888887776 899999
Q ss_pred ecccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCcccccccceecCCCCCCCCCHHHHHHHHhcCCceE
Q psy6858 258 HIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQT 337 (592)
Q Consensus 258 hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~~ 337 (592)
|+++.++. +.+|++ | |++|+|+|||.++... ...++++||||. .+++++||+.|++ .++
T Consensus 197 HvSt~~~v---~~ak~~----g----vt~Ev~pHhL~l~~~~-------~~~~k~~PPLR~-~~dr~aL~~~l~~--id~ 255 (392)
T PRK00369 197 HASNPRTV---RLAKEL----G----FTVDITPHHLLVNGEK-------DCLTKVNPPIRD-INERLWLLQALSE--VDA 255 (392)
T ss_pred ECCCHHHH---HHHHHC----C----CeEEechhHheeccCC-------CCceEEeCCCCC-HHHHHHHHHHHHh--CCE
Confidence 99998864 456666 5 5779999999998852 235789999998 7999999999998 999
Q ss_pred EeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCCcc
Q psy6858 338 TGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDAD 417 (592)
Q Consensus 338 ~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~AD 417 (592)
++|||+|+...+|.. +|+.+|+|++|+|..++++|. ++..++++++++++++|.|||++||+ + .|.|++|++||
T Consensus 256 i~SDHaP~~~~~K~~---~f~~~~~Gi~GlE~~lpll~~-~v~~~~lsl~~~v~~~s~nPA~ilgl-~-~g~i~~G~~AD 329 (392)
T PRK00369 256 IASDHAPHSSFEKLQ---PYEVCPPGIAALSFTPPFIYT-LVSKGILSIDRAVELISTNPARILGI-P-YGEIKEGYRAN 329 (392)
T ss_pred EEeCCCCCCHHHccC---CHhhCCCCCeeHHHHHHHHHH-HHHcCCCCHHHHHHHHHHHHHHHhCC-C-CCccCCCCccC
Confidence 999999999887743 799999999999999999997 77789999999999999999999999 4 48899999999
Q ss_pred EEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEEECCEEEEECCeeeecCCCceeecCC
Q psy6858 418 IVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQGNYLPTH 481 (592)
Q Consensus 418 lVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv~GkvV~~~g~l~~~~g~g~~~~~~ 481 (592)
||+||++ .+++ +..++...|+||+|+.+.|+|..||++|++||++|++...+|.|+|=+|+
T Consensus 330 lvi~d~~-~~~~--~~~~sk~~~sp~~G~~l~G~v~~ti~~G~~v~~~~~~~~~~g~G~~~~~~ 390 (392)
T PRK00369 330 FTVIQFE-DWRY--STKYSKVIETPLDGFELKASVYATIVQGKLAYLEGEVFPVKGINPFGERK 390 (392)
T ss_pred EEEEeCC-ceeE--ccccccCCCCCCCCCEeeeEEEEEEECCEEEEECCeEecCCCCCCCCccc
Confidence 9999998 5665 56788999999999999999999999999999999999999999886664
No 26
>cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This group contains the archeal members of the DHOase family.
Probab=100.00 E-value=7.9e-51 Score=427.82 Aligned_cols=360 Identities=28% Similarity=0.395 Sum_probs=314.8
Q ss_pred CCEEeeCccccCcCcccccCCCCChhhHHHHHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccccc
Q psy6858 66 GSYVIPGGIDPHTHFELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVGI 145 (592)
Q Consensus 66 G~~V~PG~ID~HtH~~~~~~~~~~~d~~~~~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 145 (592)
|++|+||+||+|+|+..+. ....++|.+++++|++||||||+||....+..+..+.++.....+..+++++|+++..+
T Consensus 1 G~~vlPG~iD~HvH~r~pg--~~~~ed~~s~t~aA~~GGvTtv~~mPnt~P~~~~~~~~~~~~~~a~~~~~vd~~~~~~~ 78 (361)
T cd01318 1 GLLILPGVIDIHVHFREPG--LTYKEDFVSGSRAAAAGGVTTVMDMPNTKPPTTTAEALYEKLRLAAAKSVVDYGLYFGV 78 (361)
T ss_pred CCEEecCeeEeeecCCCCC--CCccCcHHHHHHHHHcCCCEEEEECCCCCCCCCcHHHHHHHHHHhccCceeEEEEEEee
Confidence 7899999999999998763 45789999999999999999999998766677788899988888888889999999887
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEEEEEeeCC-CcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCC
Q psy6858 146 TWWSDQVQQEMAELCEKHGVNSFKTFMAYKG-LYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGP 224 (592)
Q Consensus 146 ~~~~~~~~~~~~~lv~~~Gv~~~k~~~~~~~-~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p 224 (592)
+.. +++.++.+ .|+.++|.|+.+.. ....++..|+++++.+. .++.+|+|+.+++.....+....+
T Consensus 79 ~~~-----~~l~~~~~-~~~~g~k~f~~~~~~~~~~~~~~l~~~~~~~~---~~v~~H~E~~~l~~~~~~~~~~~~---- 145 (361)
T cd01318 79 TGS-----EDLEELDK-APPAGYKIFMGDSTGDLLDDEETLERIFAEGS---VLVTFHAEDEDRLRENRKELKGES---- 145 (361)
T ss_pred cCh-----hhHHHHHH-hhCcEEEEEEecCCCCcCCCHHHHHHHHHhcC---CeEEEeCCChHHHHHHHhhhhhcc----
Confidence 654 35555543 48899999986532 22357888999998875 789999999988776555444333
Q ss_pred CCccCCCcHHHHHHHHHHHHHHhcccCCCEEEEecccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCcc
Q psy6858 225 EGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTW 304 (592)
Q Consensus 225 ~~~~~s~p~~~e~eav~~~i~la~~~~~pl~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~ 304 (592)
+|..++|...|.+++.+++.++++.++++|+.|+++.++.+.|+.+| . .|++|++++||.++...+..
T Consensus 146 -~~~~~~P~~aE~~av~r~~~la~~~~~~~hi~Hvs~~~~~~~i~~~k-------~--~vt~ev~ph~L~l~~~~~~~-- 213 (361)
T cd01318 146 -AHPRIRDAEAAAVATARALKLARRHGARLHICHVSTPEELKLIKKAK-------P--GVTVEVTPHHLFLDVEDYDR-- 213 (361)
T ss_pred -CCCCcCCHHHHHHHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHHhC-------C--CeEEEeCHHHhhcCHHHHhc--
Confidence 67888999999999999999999999999999999999999998775 3 79999999999999877642
Q ss_pred cccccceecCCCCCCCCCHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCC
Q psy6858 305 HDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGIL 384 (592)
Q Consensus 305 ~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l 384 (592)
....+.++||+|. .+++++||+++++|..++++|||+|+....|.. +|+..|+|+.|+|..++.++. ++..+++
T Consensus 214 -~~~~~k~~PPlr~-~~d~~aL~~~l~~G~id~i~SDh~P~~~~~k~~---~~~~a~~G~~g~e~~l~~~~~-~v~~~~l 287 (361)
T cd01318 214 -LGTLGKVNPPLRS-REDRKALLQALADGRIDVIASDHAPHTLEEKRK---GYPAAPSGIPGVETALPLMLT-LVNKGIL 287 (361)
T ss_pred -CCCeEEEeCCCCC-HHHHHHHHHHHhCCCCCEEeeCCCCCCHHHccC---ChhhCCCCCccHHHHHHHHHH-HHHcCCC
Confidence 3457789999998 788999999999999999999999998887754 699999999999999999885 6778899
Q ss_pred CHHHHHHHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEEECC
Q psy6858 385 SPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGG 459 (592)
Q Consensus 385 ~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv~G 459 (592)
++.++++++|.|||++||+ +++|+|++|++|||||||++..++++.+.+++.+.|+||+|++++|+|..||++|
T Consensus 288 ~l~~a~~~~t~nPA~~lgl-~~~G~i~~G~~ADlvv~d~~~~~~v~~~~~~s~~~~tp~~G~~l~G~v~~t~~~G 361 (361)
T cd01318 288 SLSRVVRLTSHNPARIFGI-KNKGRIAEGYDADLTVVDLKEERTIRAEEFHSKAGWTPFEGFEVTGFPVMTIVRG 361 (361)
T ss_pred CHHHHHHHHhHHHHHHhCC-CCCCccCCCCcCCEEEEeCCCCEEECHHHccccCCCCCCCCCEEeeEEEEEEeCc
Confidence 9999999999999999999 5689999999999999999999999999999999999999999999999999998
No 27
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=100.00 E-value=1.8e-50 Score=428.81 Aligned_cols=372 Identities=22% Similarity=0.286 Sum_probs=327.0
Q ss_pred CeEEecCCCEEeeCccccCcCcccccCCCCChhhHHHHHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceee
Q psy6858 59 VRVIDAAGSYVIPGGIDPHTHFELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCD 138 (592)
Q Consensus 59 ~~vIDa~G~~V~PG~ID~HtH~~~~~~~~~~~d~~~~~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 138 (592)
.++||++|++|+||+||+|+|+..+. ....+++.+++++|+.+|||||+|+....+..+..+.+..+...+....+++
T Consensus 2 ~~~iD~~g~~vlPG~iD~HvH~~~~~--~~~~e~~~s~s~aA~~GGvTtii~~p~~~p~~~~~~~~~~~~~~~~~~~~~~ 79 (374)
T cd01317 2 AEVIDAEGKILAPGLVDLHVHLREPG--FEYKETLESGAKAAAAGGFTTVVCMPNTNPVIDNPAVVELLKNRAKDVGIVR 79 (374)
T ss_pred CeEEECCCCEEecCEEeeccccCCCC--ccccchHHHHHHHHHhCCCcEEEECCCCCCCCCCHHHHHHHHHHhccCCcee
Confidence 57999999999999999999998764 3467899999999999999999999877667777888888888887777778
Q ss_pred eeccccccCCChH-HHHHHHHHHHHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHH
Q psy6858 139 YALHVGITWWSDQ-VQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLL 217 (592)
Q Consensus 139 ~~~~~~~~~~~~~-~~~~~~~lv~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~ 217 (592)
|.++..++.+... ..+++.++.+ .|+.+||.+ +....++..++++++.++++|.++.+|+|+..++.. .+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~i~~l~~-~G~~~~k~~----~~~~~~~~~l~~~~~~~~~~g~~v~~H~E~~~~~~~---~~~ 151 (374)
T cd01317 80 VLPIGALTKGLKGEELTEIGELLE-AGAVGFSDD----GKPIQDAELLRRALEYAAMLDLPIIVHPEDPSLAGG---GVM 151 (374)
T ss_pred EEEEEEEeeCCCcccHHHHHHHHH-CCcEEEEcC----CcCCCCHHHHHHHHHHHHhcCCeEEEecCChhhhhc---cCc
Confidence 8777777765544 4778888764 599999843 223468889999999999999999999999876542 234
Q ss_pred HcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCEEEEecccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCC
Q psy6858 218 AAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHA 297 (592)
Q Consensus 218 ~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~ 297 (592)
..|...+..+..++|...|.+++.+++.++++.++++|+.|+++.++.+.+..+|+. |+ .+++|+++++|.+|.
T Consensus 152 ~~g~~~~~~~~~~~p~~~e~~~v~~~~~la~~~~~~i~i~h~ss~~~l~~i~~~~~~----G~--~~~~e~~~h~L~ld~ 225 (374)
T cd01317 152 NEGKVASRLGLPGIPPEAETIMVARDLELAEATGARVHFQHLSTARSLELIRKAKAK----GL--PVTAEVTPHHLLLDD 225 (374)
T ss_pred cCChhhHHhCCCCCCHHHHHHHHHHHHHHHHHhCCcEEEEeCCCHHHHHHHHHHHHC----CC--CEEEEecHHHHhcCH
Confidence 456666777788899999999999999999999999999999999999999999998 99 999999999999999
Q ss_pred CCCCCcccccccceecCCCCCCCCCHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHh
Q psy6858 298 NQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEK 377 (592)
Q Consensus 298 ~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~ 377 (592)
+++.. ....++++||+|. .+++++||+++++|..+++||||++++..++.. +|+..|.|++|+|..|+.+++.
T Consensus 226 ~~~~~---~~~~~k~~Pplr~-~~~~~~l~~~~~~G~i~~igsDh~p~~~~~k~~---~~~~~~~Gi~g~e~~l~~~~~~ 298 (374)
T cd01317 226 EALES---YDTNAKVNPPLRS-EEDREALIEALKDGTIDAIASDHAPHTDEEKDL---PFAEAPPGIIGLETALPLLWTL 298 (374)
T ss_pred HHHhc---cCCceEEcCCCCC-HHHHHHHHHHHhcCCceEEEcCCCCCCHHHccC---CHhhCCCcHhHHHHHHHHHHHH
Confidence 88643 3456789999997 578999999999999999999999999887754 6999999999999999999999
Q ss_pred hccCCCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEE
Q psy6858 378 GVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYV 455 (592)
Q Consensus 378 ~v~~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~V 455 (592)
++..+.++++++++++|.|||++||++ .|+|++|++|||++||++.+++++.+.+++.+.|+||+|++++|+|.+|
T Consensus 299 ~~~~~~~~~~~~~~~~t~npA~~lgl~--~G~l~~G~~ADlvi~d~~~~~~~~~~~~~s~~~~sp~~G~~l~g~~~~t 374 (374)
T cd01317 299 LVKGGLLTLPDLIRALSTNPAKILGLP--PGRLEVGAPADLVLFDPDAEWIVDEETFRSKSKNTPFDGQKLKGRVLAT 374 (374)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhCCC--CCcccCCCcCCEEEECCCCCEEEChhhccccCCCCCCCCCEEeEEEEEC
Confidence 998899999999999999999999995 4999999999999999999999999999999999999999999999764
No 28
>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.
Probab=100.00 E-value=9.2e-50 Score=416.98 Aligned_cols=335 Identities=31% Similarity=0.447 Sum_probs=297.5
Q ss_pred CEEeeCccccCcCcccccCCCCChhhHHHHHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeecccccc
Q psy6858 67 SYVIPGGIDPHTHFELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVGIT 146 (592)
Q Consensus 67 ~~V~PG~ID~HtH~~~~~~~~~~~d~~~~~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 146 (592)
++|+||+||+|+|+..+.+. ...++|.+++++|++||||||+||....+..+..+.++.+...+..+++++|+++..++
T Consensus 1 ~~vlPG~iD~HvH~r~pg~~-~~~e~~~t~t~aA~~GG~Ttv~~mpn~~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~ 79 (337)
T cd01302 1 LLVLPGFIDIHVHLRDPGGT-TYKEDFESGSRAAAAGGVTTVIDMPNTGPPPIDLPAIELKIKLAEESSYVDFSFHAGIG 79 (337)
T ss_pred CEecCCeeEeeeccCCCCCC-CchhHHHHHHHHHHhCCCcEEEECCCCCCCCCcHHHHHHHHHHhCcCcEeeEEEEEecc
Confidence 58999999999999887644 47899999999999999999999987766667788898888888888899999998887
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEEEeeCCCc--CCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCC
Q psy6858 147 WWSDQVQQEMAELCEKHGVNSFKTFMAYKGLY--MLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGP 224 (592)
Q Consensus 147 ~~~~~~~~~~~~lv~~~Gv~~~k~~~~~~~~~--~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p 224 (592)
.+. ..+++.++. +.|+.+||+|+.+.... ..+++++.++++.++++|.++.+|+|
T Consensus 80 ~~~--~~~el~~l~-~~Gv~g~K~f~~~~~~~~~~~~~~~l~~~~~~~~~~g~~v~~H~E-------------------- 136 (337)
T cd01302 80 PGD--VTDELKKLF-DAGINSLKVFMNYYFGELFDVDDGTLMRTFLEIASRGGPVMVHAE-------------------- 136 (337)
T ss_pred Ccc--CHHHHHHHH-HcCCcEEEEEEeccCCCccccCHHHHHHHHHHHHhcCCeEEEeHH--------------------
Confidence 642 456777775 46999999999764322 57899999999999999999999988
Q ss_pred CCccCCCcHHHHHHHHHHHHHHhcccCCCEEEEecccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCcc
Q psy6858 225 EGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTW 304 (592)
Q Consensus 225 ~~~~~s~p~~~e~eav~~~i~la~~~~~pl~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~ 304 (592)
+.+.++++.++++|+.|+++.++.+.|+.+|++ |+ .|++|+++++|.++..++..
T Consensus 137 -----------------r~~~la~~~g~~l~i~Hiss~~~le~i~~ak~~----g~--~vt~ev~ph~L~l~~~~~~~-- 191 (337)
T cd01302 137 -----------------RAAQLAEEAGANVHIAHVSSGEALELIKFAKNK----GV--KVTCEVCPHHLFLDESMLRL-- 191 (337)
T ss_pred -----------------HHHHHHHHhCCcEEEEeCCCHHHHHHHHHHHHC----CC--cEEEEcChhhheeCHHHhhC--
Confidence 467788889999999999999999999999999 99 99999999999998877632
Q ss_pred cccccceecCCCCCCCCCHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCC
Q psy6858 305 HDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGIL 384 (592)
Q Consensus 305 ~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l 384 (592)
....+.++||+|. .+++++||+.++.|...+++|||+|++...|..+ ++|+.+|+|++|+|..++.+|+.++. +++
T Consensus 192 -~~~~~k~~Pplr~-~~~~~~L~~~l~~G~id~i~sDh~p~~~~~k~~~-~~~~~a~~G~~g~e~~l~~~~~~~~~-~~i 267 (337)
T cd01302 192 -NGAWGKVNPPLRS-KEDREALWEGVKNGKIDTIASDHAPHSKEEKESG-KDIWKAPPGFPGLETRLPILLTEGVK-RGL 267 (337)
T ss_pred -CCceEEEeCCCCC-HHHHHHHHHHHhCCCCCEEecCCCCCCHHHhccC-CCcccCCCCcccHHHHHHHHHHHHHh-cCC
Confidence 3446779999998 6889999999999999999999999998887654 47999999999999999999988775 469
Q ss_pred CHHHHHHHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEE
Q psy6858 385 SPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYV 455 (592)
Q Consensus 385 ~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~V 455 (592)
+++++++++|.|||++||+++ +|+|++|++|||||||++..++++.+.+++.+.|+||+|++++|+|..|
T Consensus 268 ~~~~~~~~~s~~pA~~~gl~~-~g~i~~G~~ADlvi~d~~~~~~v~~~~~~s~~~~sp~~G~~l~G~v~~t 337 (337)
T cd01302 268 SLETLVEILSENPARIFGLYP-KGTIAVGYDADLVIVDPKKEWKVTAEEIESKADWTPFEGMEVTGKPVST 337 (337)
T ss_pred CHHHHHHHHHHHHHHHcCCCC-CCccccCCcCCEEEEeCCCcEEEcHHHhcccCCCCCcCCcEEEEEEEEC
Confidence 999999999999999999954 7999999999999999999999999999999999999999999999765
No 29
>cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis. Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate.
Probab=100.00 E-value=3.1e-47 Score=396.36 Aligned_cols=342 Identities=22% Similarity=0.287 Sum_probs=284.2
Q ss_pred CEEeeCccccCcCcccccCCCCChhhHHHHHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeecccccc
Q psy6858 67 SYVIPGGIDPHTHFELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVGIT 146 (592)
Q Consensus 67 ~~V~PG~ID~HtH~~~~~~~~~~~d~~~~~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 146 (592)
.+|+||+||+|+|+..|. ....++|.+++++|++||||||+||....+.....+.++.+.+.+...+++||++|..++
T Consensus 2 ~~vlPG~ID~HvH~r~pg--~~~~ed~~sgs~AAa~GGvTtv~dmPnt~P~~~~~~~~~~~~~~a~~~s~vd~~~~~~~~ 79 (344)
T cd01316 2 TIRLPGLIDVHVHLREPG--ATHKEDFASGTKAALAGGFTMVRAMPNTNPSIVDVASLKLVQSLAQAKARCDYAFSIGAT 79 (344)
T ss_pred eEEeCCeEEeeeccCCCC--cCCcChHHHHHHHHHhCCCeEEEECCCCCCCCCCHHHHHHHHHHhccCcEEeEEEEeeec
Confidence 479999999999998884 457899999999999999999999987666667788999999998888899999998887
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEEEeeCCCc-CCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCC
Q psy6858 147 WWSDQVQQEMAELCEKHGVNSFKTFMAYKGLY-MLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPE 225 (592)
Q Consensus 147 ~~~~~~~~~~~~lv~~~Gv~~~k~~~~~~~~~-~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~ 225 (592)
.++.. ++.++.. .+.+||+|+.+.... ...+...+.....+...+.++.+|+++
T Consensus 80 ~~~~~---~~~~l~~--~~~g~k~f~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~e~-------------------- 134 (344)
T cd01316 80 STNAA---TVGELAS--EAVGLKFYLNETFSTLILDKITAWASHFNAWPSTKPIVTHAKS-------------------- 134 (344)
T ss_pred CCCHH---HHHHHHh--ccCeEEEEECCCCCCCccchHHHHHHHHHhcccCCCeEEehhh--------------------
Confidence 76643 3444432 367899987542111 122322222233333345566666554
Q ss_pred CccCCCcHHHHHHHHHHHHHHhcccCCCEEEEecccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCccc
Q psy6858 226 GHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWH 305 (592)
Q Consensus 226 ~~~~s~p~~~e~eav~~~i~la~~~~~pl~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~ 305 (592)
..+.+++.+++..++|+|++|+++.+++++|+.+|++ |+ .|++|+|++||.++..++..
T Consensus 135 ------------~~~~~~l~la~~~g~~lhi~HiSt~~~~~~i~~ak~~----g~--~vt~ev~phhL~l~~~~~~~--- 193 (344)
T cd01316 135 ------------QTLAAVLLLASLHNRSIHICHVSSKEEINLIRLAKAR----GL--KVTCEVSPHHLFLSQDDLPR--- 193 (344)
T ss_pred ------------HHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHHHHHC----CC--cEEEEechHHeeccHHHhhc---
Confidence 3445688999999999999999999999999999999 99 99999999999999887643
Q ss_pred ccccceecCCCCCCCCCHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCC
Q psy6858 306 DQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILS 385 (592)
Q Consensus 306 ~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~ 385 (592)
..+.++||||. .+++++||+++. ...+++|||+|+....|.. ...|+|++|+|..++++|+ ++..++++
T Consensus 194 --~~~k~~PPLR~-~~dr~aL~~~l~--~id~i~SDHaP~~~~~K~~-----~~a~~G~~g~e~~lpl~~~-~v~~~~i~ 262 (344)
T cd01316 194 --GQYEVRPFLPT-REDQEALWENLD--YIDCFATDHAPHTLAEKTG-----NKPPPGFPGVETSLPLLLT-AVHEGRLT 262 (344)
T ss_pred --CCceeCCCCcC-HHHHHHHHHHHh--cCCEEEcCCCCCCHHHhcC-----CCCCCCcccHHHHHHHHHH-HHHcCCCC
Confidence 35789999998 799999999995 5899999999998877642 2789999999999999997 78899999
Q ss_pred HHHHHHHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEEECCEEEEEC
Q psy6858 386 PEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDE 465 (592)
Q Consensus 386 ~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv~GkvV~~~ 465 (592)
+.+++++.|.||||+||+++++ +||||||++..++++.+.+++...|+||+|++++|+|..||++|++||++
T Consensus 263 l~~l~~~~s~nPAk~~gl~~~~--------~~lvi~d~~~~~~v~~~~~~s~~~~sp~~G~~l~G~v~~ti~rG~~v~~~ 334 (344)
T cd01316 263 IEDIVDRLHTNPKRIFNLPPQS--------DTYVEVDLDEEWTIPKNPLQSKKGWTPFEGKKVKGKVQRVVLRGETAFID 334 (344)
T ss_pred HHHHHHHHHHhHHHHhCCCCCC--------CCEEEEeCCCcEEEChhhccccCCCCCCCCCEEeeEEEEEEECCEEEEEC
Confidence 9999999999999999997633 36999999999999999999999999999999999999999999999999
Q ss_pred CeeeecCCCc
Q psy6858 466 GNLRVAQGQG 475 (592)
Q Consensus 466 g~l~~~~g~g 475 (592)
|++....|.|
T Consensus 335 g~~~~~~~~G 344 (344)
T cd01316 335 GEIVAPPGFG 344 (344)
T ss_pred CEEccCCCCC
Confidence 9987766655
No 30
>PRK09061 D-glutamate deacylase; Validated
Probab=100.00 E-value=7.4e-44 Score=390.22 Aligned_cols=398 Identities=20% Similarity=0.192 Sum_probs=304.7
Q ss_pred cccEEEEccEEEcCCCc--eeeEEEEECCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCcccccCCCCChhhHHH
Q psy6858 18 QNRLLIKNGKVVNADKI--SDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELELMGATSVDDFYH 95 (592)
Q Consensus 18 ~~~llIkng~Iv~~d~~--~~~dV~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~~~~~d~~~~ 95 (592)
.++++|+|++|+|++.. ..++|+|+||+|.+|++... .+.++||++|++|+|||||+|+|+..+.
T Consensus 18 ~~~~li~~~~vid~~~~~~~~~~v~I~~G~I~~ig~~~~--~~~~viD~~g~~v~PG~ID~H~H~~~~~----------- 84 (509)
T PRK09061 18 PYDLVIRNGRVVDPETGLDAVRDVGIKGGKIAAVGTAAI--EGDRTIDATGLVVAPGFIDLHAHGQSVA----------- 84 (509)
T ss_pred cCCEEEECcEEEeCCCCeeccceEEEECCEEEEecCCCC--CCCeEEeCCCCEEecCeEeeeeCCCCCc-----------
Confidence 57899999999987654 34899999999999997532 3668999999999999999999986432
Q ss_pred HHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeecccccc-------C-------------------CC
Q psy6858 96 GTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVGIT-------W-------------------WS 149 (592)
Q Consensus 96 ~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-------~-------------------~~ 149 (592)
..+.++++||||++++.. ... ...+.++. .......++|+++.+.. . +.
T Consensus 85 ~~~~~~~~GvTtvv~~~~-~~~-p~~~~~~~---~~~~~~~vn~~~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (509)
T PRK09061 85 AYRMQAFDGVTTALELEA-GVL-PVARWYAE---QAGEGRPLNYGASVGWTPARIAVLTGPQAEGTIADFGKALGDPRWQ 159 (509)
T ss_pred cchhhccCCceeEEeecc-CCC-CHHHHHHH---HHhcCCcceeehhcCcHHHHHHHhCCcccccccccccccccccccc
Confidence 256778999999998731 111 22222222 22223457888776553 1 22
Q ss_pred -----hHHHHHHHHHHH---HcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCC
Q psy6858 150 -----DQVQQEMAELCE---KHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGI 221 (592)
Q Consensus 150 -----~~~~~~~~~lv~---~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~ 221 (592)
.+..++|.++++ +.|+.+|+.++.|. ...++++|.++++.|+++|.++.+|+++...+
T Consensus 160 ~~~~t~~el~~m~~ll~~al~~Ga~gis~~~~y~--p~~~~~eL~~l~~~A~~~g~~v~~H~e~~~~~------------ 225 (509)
T PRK09061 160 ERAATPAELAEILELLEQGLDEGALGIGIGAGYA--PGTGHKEYLELARLAARAGVPTYTHVRYLSNV------------ 225 (509)
T ss_pred cCCCCHHHHHHHHHHHHHHHHCCCCEEecCCccC--CCCCHHHHHHHHHHHHHcCCEEEEEecCcccC------------
Confidence 345667777776 57999998766553 24689999999999999999999999986531
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHHHhcccCCCEEEEeccc------HHHHHHHHHHHHHHHhcCCceeeeeecccce---
Q psy6858 222 KGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIMS------KAAGDAMAYKRKELMKKGKHCTLYGETLAAA--- 292 (592)
Q Consensus 222 ~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~i~hv~s------~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~--- 292 (592)
....|.+++.+.+.++++.|+|+|+.|+++ .+..+.|+.+|+. |+ .|++|+++++
T Consensus 226 ----------~~~~e~~av~~~i~lA~~~G~rv~IsHlss~g~~~~~~~le~I~~Ar~~----Gi--~Vt~e~~P~~~~~ 289 (509)
T PRK09061 226 ----------DPRSSVDAYQELIAAAAETGAHMHICHVNSTSLRDIDRCLALVEKAQAQ----GL--DVTTEAYPYGAGS 289 (509)
T ss_pred ----------CchhHHHHHHHHHHHHHHhCCCEEEEeeccCCcccHHHHHHHHHHHHHc----CC--cEEEEecCcchhh
Confidence 023456889999999999999999999999 8889999999999 99 9999999999
Q ss_pred -----eecCCCCCCCcccccccc---ee---cCCCCC---------------------C---CCCHHHHHHHHhcCCceE
Q psy6858 293 -----VGTHANQIPCTWHDQAAH---VL---SPPLRP---------------------D---ETTPTHLLTLLNENALQT 337 (592)
Q Consensus 293 -----l~~d~~~~~~~~~~~~~~---~~---~pplr~---------------------~---~~~~~~l~~~l~~G~~~~ 337 (592)
+.++...... + ...+ ++ .||+|. . ..+.+.|+..++.+.. +
T Consensus 290 t~~~~~~l~~~~~~~-~--~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~p~~-~ 365 (509)
T PRK09061 290 TVVGAAFFDPGWLER-M--GLGYGSLQWVETGERLLTREELAKLRANDPGGLVLIHFLDEDNPRDRALLDRSVLFPGA-A 365 (509)
T ss_pred hhhcccccCHHHHHH-h--CCCHHHheehhcccccCCHHHHHHHhccCCCCeEEEEeccCCCCccchhHHHHhCCCCc-e
Confidence 4443211110 1 1112 34 788875 1 3457889999999877 9
Q ss_pred EeCCCCCCChhhhhcCCCCCCcCCCCCcchh------hHHHHHHHhhccCC-CCCHHHHHHHHhHhHHHHcC-----CCC
Q psy6858 338 TGSDNCTFNKNQKELGKDSFTHIPNGVNGVQ------DRLSVIWEKGVVPG-ILSPEKFVAVTSTNAAKIFN-----LYP 405 (592)
Q Consensus 338 ~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e------~~~~~~~~~~v~~~-~l~~~e~v~~~T~n~Ak~lg-----l~~ 405 (592)
++|||+|+....+. ++|...+.|..+.+ ..++..+.+++... .++++++++++|.+||++|| + +
T Consensus 366 i~sD~~p~~~~~~~---~~~~~~~~~~~~~~~h~r~~~~~~~~l~~~v~~~~~isl~~ai~~~T~~pA~~lg~~~~~l-~ 441 (509)
T PRK09061 366 IASDAMPWTWSDGT---VYEGDAWPLPEDAVSHPRSAGTFARFLREYVRERKALSLLEAIRKCTLMPAQILEDSVPAM-R 441 (509)
T ss_pred EecCCccccccccc---cccccccccccCCCCCchhhcchHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhccccccc-c
Confidence 99999999877664 47889999988877 77888888777764 69999999999999999999 8 4
Q ss_pred CCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEEECCEEEEECCeeeecCCCceeecCC
Q psy6858 406 KKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQGNYLPTH 481 (592)
Q Consensus 406 ~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv~GkvV~~~g~l~~~~g~g~~~~~~ 481 (592)
++|+|++|++|||||||++... ...++++. +.|++| +.+||++|++||+||+++...+.||+|+++
T Consensus 442 ~~G~i~~G~~ADlvv~D~~~~~--~~~~~~~~--~~~~~g------i~~v~v~G~~v~~~g~~~~~~~~G~~lr~~ 507 (509)
T PRK09061 442 RKGRLQAGADADIVVFDPETIT--DRATFEDP--NRPSEG------VRHVLVNGVPVVSNGELVRDARPGRPVRRP 507 (509)
T ss_pred CCEeeCCCCCcCEEEEchhhcc--cccccccc--CCCCCC------ceEEEECCEEEEECCEecCCCCCCeEecCC
Confidence 5799999999999999998522 22233222 456655 589999999999999987777899999875
No 31
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=100.00 E-value=5.8e-44 Score=383.96 Aligned_cols=357 Identities=24% Similarity=0.295 Sum_probs=273.0
Q ss_pred cEEEEccEEEcCCC--ceeeEEEEECCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCcccccCCCCChhhHHHHH
Q psy6858 20 RLLIKNGKVVNADK--ISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELELMGATSVDDFYHGT 97 (592)
Q Consensus 20 ~llIkng~Iv~~d~--~~~~dV~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~~~~~d~~~~~~ 97 (592)
+++|+|++|+++.. ...++|+|+||+|++|++... +.+.++||++|++|+|||||+|+|+..+... ..++
T Consensus 1 d~~i~n~~v~~~~~~~~~~~~i~I~~g~I~~i~~~~~-~~~~~~iD~~G~~v~PG~iD~H~H~~~~~~~-------~~~~ 72 (415)
T cd01297 1 DLVIRNGTVVDGTGAPPFTADVGIRDGRIAAIGPILS-TSAREVIDAAGLVVAPGFIDVHTHYDGQVFW-------DPDL 72 (415)
T ss_pred CEEEECCEEECCCCCccccceEEEECCEEEEEecCCC-CCCCeEEECCCCEEccCEeeeeecCCccccc-------Ccch
Confidence 47899999999754 357899999999999997643 2367899999999999999999999765321 2347
Q ss_pred HHHHcCCeeEEecccc---CCCCc-----cHH-----------------HHHHHHHHHhccC-ceeeee---cccccc--
Q psy6858 98 KAAVAGGTTTIIDFAL---PRKGE-----SLI-----------------KTYESWRQKADEK-VCCDYA---LHVGIT-- 146 (592)
Q Consensus 98 ~~ala~GtTti~d~~~---~~~~~-----~~~-----------------~a~~~~~~~~~~~-~~~~~~---~~~~~~-- 146 (592)
++++++||||++++.. +.+.. ... +.++.+......+ ..++|+ +|..+.
T Consensus 73 ~~a~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~l~~~ 152 (415)
T cd01297 73 RPSSRQGVTTVVLGNCGVSPAPANPDDLARLIMLMEGLVALGEGLPWGWATFAEYLDALEARPPAVNVAALVGHAALRRA 152 (415)
T ss_pred hhHHhCcEEEEEeccccCccCCCChhhhhhhhhhhhcccccccccCCCCCCHHHHHHHHHhcCCCcCeeeccCcHHHHHH
Confidence 8889999999998643 11110 111 4456666666444 578888 776655
Q ss_pred -------CCChHHHHHHHHHHH---HcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHH
Q psy6858 147 -------WWSDQVQQEMAELCE---KHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKL 216 (592)
Q Consensus 147 -------~~~~~~~~~~~~lv~---~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~ 216 (592)
.+++...++|.++++ +.|+.+|+.++.|......++++|+++++.++++|.++.+|+++.+
T Consensus 153 ~~g~~~~~~~~~~~~~~~~l~~~al~~Ga~g~~~~~~y~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~--------- 223 (415)
T cd01297 153 VMGLDAREATEEELAKMRELLREALEAGALGISTGLAYAPRLYAGTAELVALARVAARYGGVYQTHVRYEG--------- 223 (415)
T ss_pred HhCcCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcccccCCcccCCHHHHHHHHHHHHHcCCEEEEEECccc---------
Confidence 345567788888874 3799999988877543357999999999999999999999999854
Q ss_pred HHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCEEEEecccHHH---------HHHHHHHHHHHHhcCCceeeeee
Q psy6858 217 LAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIMSKAA---------GDAMAYKRKELMKKGKHCTLYGE 287 (592)
Q Consensus 217 ~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~i~hv~s~~a---------~~~i~~ar~~~~~~G~~~~v~~e 287 (592)
..|.+++.+++.++++.++|+|+.|+++.+. .+.|+++|.+ |+ .|++|
T Consensus 224 -----------------~~e~~av~~~~~~a~~~g~r~~i~H~ss~~~~~~~~~~~~l~~i~~a~~~----G~--~v~~e 280 (415)
T cd01297 224 -----------------DSILEALDELLRLGRETGRPVHISHLKSAGAPNWGKIDRLLALIEAARAE----GL--QVTAD 280 (415)
T ss_pred -----------------ccHHHHHHHHHHHHHHhCCCEEEEEEecCCCcccchHHHHHHHHHHHHHh----CC--cEEEE
Confidence 2356889999999999999999999999888 8999999999 99 99999
Q ss_pred cccceeecCCCCCCCcccccccceecCCCCCCCCCHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcch
Q psy6858 288 TLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGV 367 (592)
Q Consensus 288 ~~~~~l~~d~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~ 367 (592)
++++++.. ...++.+++. ..++++|||++++. +..... +
T Consensus 281 ~~p~~~~~---------------------------~~~~~~l~~~-~~~~i~SDh~~~~~--------~~~~~~----~- 319 (415)
T cd01297 281 VYPYGAGS---------------------------EDDVRRIMAH-PVVMGGSDGGALGK--------PHPRSY----G- 319 (415)
T ss_pred eCCCCCCc---------------------------HHHHHHHHcC-CCceeeeCCCcCCC--------CCcchh----C-
Confidence 99876544 2234455655 89999999999751 111111 1
Q ss_pred hhHHHHHHHhhccCC-CCCHHHHHHHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCe
Q psy6858 368 QDRLSVIWEKGVVPG-ILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGL 446 (592)
Q Consensus 368 e~~~~~~~~~~v~~~-~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~ 446 (592)
.++.+|.+++... .++++++++++|.|||++||++ ++|+|++|++|||||||++...... .++.+ .
T Consensus 320 --~~~~~l~~~~~~~~~~~~~~~~~~~t~~pA~~~gl~-~~G~l~~G~~ADlvv~d~~~~~~~~--------~~~~~--~ 386 (415)
T cd01297 320 --DFTRVLGHYVRERKLLSLEEAVRKMTGLPARVFGLA-DRGRIAPGYRADIVVFDPDTLADRA--------TFTRP--N 386 (415)
T ss_pred --CHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhCCC-CCceeCCCCCCCEEEEccccccccc--------chhhh--c
Confidence 1666776665444 5999999999999999999995 6799999999999999998543322 22222 1
Q ss_pred EEeeeeeEEEECCEEEEECCeeee
Q psy6858 447 VCHGVPEYVIVGGRVCVDEGNLRV 470 (592)
Q Consensus 447 ~~~g~~~~Viv~GkvV~~~g~l~~ 470 (592)
.....+..||++|++||+||+++.
T Consensus 387 ~~~~~v~~viv~G~~v~~~~~~~~ 410 (415)
T cd01297 387 QPAEGIEAVLVNGVPVVRDGAFTG 410 (415)
T ss_pred cCCCCceEEEECCEEEEECCEECC
Confidence 222368999999999999998864
No 32
>PRK15446 phosphonate metabolism protein PhnM; Provisional
Probab=100.00 E-value=7e-40 Score=347.45 Aligned_cols=362 Identities=20% Similarity=0.223 Sum_probs=254.9
Q ss_pred cccEEEEccEEEcCCCceeeEEEEECCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcC-ccc---ccCCC--CChh
Q psy6858 18 QNRLLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTH-FEL---ELMGA--TSVD 91 (592)
Q Consensus 18 ~~~llIkng~Iv~~d~~~~~dV~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH-~~~---~~~~~--~~~d 91 (592)
+|+++|+|++|++++....++|+|+||+|++|++... ...++||++|++|||||||+|+| +.+ |..+. ...+
T Consensus 1 ~~~~~i~~~~v~~~~~~~~~~i~i~~g~I~~i~~~~~--~~~~~iDa~g~~v~PG~ID~H~h~~~~~~~p~~~~~~~~~~ 78 (383)
T PRK15446 1 MMEMILSNARLVLPDEVVDGSLLIEDGRIAAIDPGAS--ALPGAIDAEGDYLLPGLVDLHTDNLEKHLAPRPGVDWPADA 78 (383)
T ss_pred CccEEEECcEEEcCCCceeeeEEEECCEEEEecCCCC--CCCceEeCCCCEEEeCeEEcccCCcccccCCCCCCccchHH
Confidence 4789999999999887779999999999999998543 24578999999999999999995 443 43222 2238
Q ss_pred hHHHHHHHHHcCCeeEEeccccCC--C-----CccHHHHHHHHHH--HhccCceeeeeccccccCCChHHHHHHHHHHHH
Q psy6858 92 DFYHGTKAAVAGGTTTIIDFALPR--K-----GESLIKTYESWRQ--KADEKVCCDYALHVGITWWSDQVQQEMAELCEK 162 (592)
Q Consensus 92 ~~~~~~~~ala~GtTti~d~~~~~--~-----~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~ 162 (592)
+|++++++++++||||++|+.... + ...+...+.++.. .+..+++|||++|..+..|+++..++++++++
T Consensus 79 ~~~~~~~~a~~gG~Tt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vD~~~h~~~~~~~~~~~~~l~~~~~- 157 (383)
T PRK15446 79 ALAAHDAQLAAAGITTVFDALSVGDEEDGGLRSRDLARKLIDAIEEARARGLLRADHRLHLRCELTNPDALELFEALLA- 157 (383)
T ss_pred HHHHHHHHHHhCCccEeeeeeEeccCCCCCcccHHHHHHHHHHHHHhhhcCchhccceeEEEEEecCcchHHHHHHHhc-
Confidence 899999999999999999975322 2 1333333334333 34467899999999999999888899999975
Q ss_pred cCCcEEEEEEeeC-CCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHH
Q psy6858 163 HGVNSFKTFMAYK-GLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVT 241 (592)
Q Consensus 163 ~Gv~~~k~~~~~~-~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~ 241 (592)
.|+.+||.||... +..+.....-++.+. +++.| .+|+|+.+++.+...+ |...+.+.+.
T Consensus 158 ~g~~~~k~fm~~~p~~~~~~~~~~~~~~~-~~~~g---~~~~e~~~~~~~~~~~----------------~~~~~~e~i~ 217 (383)
T PRK15446 158 HPRVDLVSLMDHTPGQRQFRDLEKYREYY-AGKYG---LSDEEFDAFVEERIAL----------------SARYAPPNRR 217 (383)
T ss_pred CCCcCEEEEeCCCCccccccCHHHHHHHH-HhhcC---CCHHHHHHHHHHHHHh----------------HhhcCHHHHH
Confidence 4999999999754 322222222244444 55777 7899987765432222 5666678999
Q ss_pred HHHHHhcccCCCEEEEec-ccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCccc-cccccee-cC-CCC
Q psy6858 242 RACTIANQVDCPLYVVHI-MSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWH-DQAAHVL-SP-PLR 317 (592)
Q Consensus 242 ~~i~la~~~~~pl~i~hv-~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~-~~~~~~~-~p-plr 317 (592)
+++.+|+..|+++ ..|. .+. +.++.+++. |+ .+..-.. +.... .... ....... .| ++|
T Consensus 218 ~~v~~A~~~g~~v-~sH~~~~~---~~i~~a~~~----Gv--~~~e~~~------~~e~~-~~~~~~g~~v~~~~p~~~r 280 (383)
T PRK15446 218 AIAALARARGIPL-ASHDDDTP---EHVAEAHAL----GV--AIAEFPT------TLEAA-RAARALGMSVLMGAPNVVR 280 (383)
T ss_pred HHHHHHHHCCCce-eecCCCCH---HHHHHHHHc----CC--ceeeCCC------cHHHH-HHHHHCCCEEEeCCccccc
Confidence 9999999999998 5576 343 356777777 88 5541100 00000 0001 1111112 23 355
Q ss_pred CC-CCCHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHh
Q psy6858 318 PD-ETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTN 396 (592)
Q Consensus 318 ~~-~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n 396 (592)
.. ......++++++.|+.++++|||.+.+.. ..++. .+...++++.++++++|+|
T Consensus 281 ~~~~~~~~~~~~~~~~Gv~~~lgSD~~p~~~~-----------------------~~~~~-~~~~~gls~~~al~~~T~n 336 (383)
T PRK15446 281 GGSHSGNVSALDLAAAGLLDILSSDYYPASLL-----------------------DAAFR-LADDGGLDLPQAVALVTAN 336 (383)
T ss_pred CCcccchHhHHHHHHCCCcEEEEcCCChhhHH-----------------------HHHHH-HHHhcCCCHHHHHHHHhHH
Confidence 32 24567889999999999999999764211 11221 2235679999999999999
Q ss_pred HHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEEECCEEEEECC
Q psy6858 397 AAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEG 466 (592)
Q Consensus 397 ~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv~GkvV~~~g 466 (592)
||++||+ +++|+|++|++|||+|||++.. . ..+..||++|++||+.+
T Consensus 337 pA~~lgl-~~~G~I~~G~~ADlvv~d~~~~--~--------------------~~v~~v~~~G~~v~~~~ 383 (383)
T PRK15446 337 PARAAGL-DDRGEIAPGKRADLVRVRRAGG--L--------------------PVVRAVWRGGRRVFLAG 383 (383)
T ss_pred HHHHcCC-CCCcCcCCCCcCCEEEEcCCCC--C--------------------cchheEEECCEEEEeCC
Confidence 9999999 4569999999999999998710 0 13578999999998753
No 33
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=100.00 E-value=3.7e-37 Score=322.12 Aligned_cols=323 Identities=15% Similarity=0.089 Sum_probs=245.1
Q ss_pred EeeCccccCcCcccccCCCCChhhHHHHHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCc-eeeeeccccccC
Q psy6858 69 VIPGGIDPHTHFELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKV-CCDYALHVGITW 147 (592)
Q Consensus 69 V~PG~ID~HtH~~~~~~~~~~~d~~~~~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~ 147 (592)
-+||+||+|+|+..+ +++.+++++|.++| ||+++|....+.....+.+.++........ ..++..+..+..
T Consensus 2 ~~Pg~iD~h~h~~~~-------~~~~~~~~aa~~gG-Ttvv~mpnt~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 73 (335)
T cd01294 2 TIPRPDDMHLHLRDG-------AMLKLVLPYTARGF-SRAIVMPNLKPPVTTTADALAYRERILAADPGPNFTPLMTLYL 73 (335)
T ss_pred cCCCcceeEecCCCc-------hHHHHHHHHHHhCC-CEEEECCCCCCCCCCHHHHHHHHHHHHhcCCCCcEEEEEEEec
Confidence 379999999999753 88999999999999 999999866544434454555555444433 344444443311
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEEEeeC----CCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCC
Q psy6858 148 WSDQVQQEMAELCEKHGVNSFKTFMAYK----GLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKG 223 (592)
Q Consensus 148 ~~~~~~~~~~~lv~~~Gv~~~k~~~~~~----~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~ 223 (592)
......++++++++..|+.+||+|+... +....++..++++++.+.++|+++.+|+|+..+...
T Consensus 74 ~~~~~~~el~~~~~~~G~~g~Klf~~~~~~~~~~~~~d~~~l~~~~e~~~~~g~~V~vHaE~~~l~~~------------ 141 (335)
T cd01294 74 TENTTPEELREAKKKGGIRGVKLYPAGATTNSQGGVTDLEKIYPVLEAMQKLGMPLLVHGEVPDFKID------------ 141 (335)
T ss_pred cCCCCHHHHHHHHHhCCceEEEEecCCCccCCCCCcCCHHHHHHHHHHHHHcCCeEEEecCCCccccc------------
Confidence 1121357888887666999999997521 111125678999999999999999999998654210
Q ss_pred CCCccCCCcHHHHHHHHHHHHHHhcc-cCCCEEEEecccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCC
Q psy6858 224 PEGHQLSRPEEVEAEAVTRACTIANQ-VDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPC 302 (592)
Q Consensus 224 p~~~~~s~p~~~e~eav~~~i~la~~-~~~pl~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~ 302 (592)
+...+.+.+.+.+.++.+ .++++|+.|+++.++++.|+++| - .|++|+|++||.++..++..
T Consensus 142 --------~~~~e~~~~~~~~~lA~~~p~~~v~i~Hvst~~~~~~i~~ak-------~--~vt~Et~ph~L~l~~~~~~~ 204 (335)
T cd01294 142 --------VLDREAKFIPVLEPLAQRFPKLKIVLEHITTADAVEYVKSCN-------E--NVAATITPHHLLLTRDDLLG 204 (335)
T ss_pred --------chhhHHHHHHHHHHHHHHcCCCeEEEecccHHHHHHHHHhCC-------C--CcEEEEchhHheeeHHHhcC
Confidence 111234556778889997 49999999999999999987653 2 68999999999999887643
Q ss_pred cccccccceecCCCCCCCCCHHHHHHHHhcCCce-EEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccC
Q psy6858 303 TWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQ-TTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVP 381 (592)
Q Consensus 303 ~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~-~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~ 381 (592)
. ..+..++++||||. .+++++||+.+..|.+. +++|||+|++..+|.. .|. ..|+.+++..++++|. .+.
T Consensus 205 ~-~~g~~~k~~PPlR~-~~d~~~L~~~l~~G~id~~i~SDHaP~~~~~K~~---~~g--~~Gi~~~~~~l~~~~~-~~~- 275 (335)
T cd01294 205 G-GLNPHLYCKPVAKR-PEDREALRKAATSGHPKFFLGSDSAPHPKSNKES---SCG--CAGIFSAPIALPYLAE-VFE- 275 (335)
T ss_pred C-CCCCCeEEcCCCCC-HHHHHHHHHHHHcCCCCeEEECCCCCCCCccccC---CCC--CccccCHHHHHHHHHH-HHh-
Confidence 1 12557889999998 78999999999999999 5999999999887741 222 2255555558888883 454
Q ss_pred CCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeE
Q psy6858 382 GILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLV 447 (592)
Q Consensus 382 ~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~ 447 (592)
++++++++++++|.||||+||++++||+|.+|. ..++++.+.+++...|+||+|-+
T Consensus 276 ~~l~l~~~v~~~s~nPA~i~gl~~~kg~i~~~~----------~~~~v~~~~~~s~~~~sp~~g~~ 331 (335)
T cd01294 276 EHNALDKLEAFASDNGPNFYGLPPNKKTITLVK----------EPWKVPEKIPFGNNGVVPFRAGE 331 (335)
T ss_pred ccCCHHHHHHHHHhHHHHHhCCCCCCCeEEEEe----------eceEcCchhccCCCceecccCCc
Confidence 599999999999999999999999888776664 68899999999999999999864
No 34
>TIGR02318 phosphono_phnM phosphonate metabolism protein PhnM. This family consists of proteins from in the PhnM family. PhnM is a a protein associated with phosphonate utilization in a number of bacterial species. In Pseudomonas stutzeri WM88, a protein that is part of a system for the oxidation of phosphites (another form of reduced phosphorous compound) scores between trusted and noise cutoffs.
Probab=100.00 E-value=3e-36 Score=318.67 Aligned_cols=356 Identities=19% Similarity=0.189 Sum_probs=248.6
Q ss_pred EEEccEEEcCCCceeeEEEEECCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCccc------ccCCCCChhhHHH
Q psy6858 22 LIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFEL------ELMGATSVDDFYH 95 (592)
Q Consensus 22 lIkng~Iv~~d~~~~~dV~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~------~~~~~~~~d~~~~ 95 (592)
+|+|++|++++....++|.|+||+|++|++... ...++||++|++|||||||+|+|+.. |.......++|+.
T Consensus 1 ~i~~~~vv~~~~~~~~~i~i~dg~I~~i~~~~~--~~~~~iD~~G~~v~PGlID~H~h~~e~~~~prp~~~~~~~~~~~~ 78 (376)
T TIGR02318 1 VLSNARLVLEDEVVEGSVVIEDGAIADIGEGPV--ALAEAIDGEGDLLLPGLIDLHTDNLERHMSPRPGVDWPIDAAIVE 78 (376)
T ss_pred CEeCeEEECCCceEeeeEEEECCEEEEecCCCC--CCCceEeCCCCEEeccEEEcccCccccCcCCCCCCCcchHHHHHH
Confidence 589999999888778899999999999997432 24578999999999999999999865 3321122378999
Q ss_pred HHHHHHcCCeeEEeccccCC---CCccHHHHHHHHH---HHhccC--ceeeeeccccccCCChHHHHHHHHHHHHcCCcE
Q psy6858 96 GTKAAVAGGTTTIIDFALPR---KGESLIKTYESWR---QKADEK--VCCDYALHVGITWWSDQVQQEMAELCEKHGVNS 167 (592)
Q Consensus 96 ~~~~ala~GtTti~d~~~~~---~~~~~~~a~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~lv~~~Gv~~ 167 (592)
++++++++||||++|+.... ++....+.++... ..+..+ .++|+++|..+....++..++++.++ +.|+.+
T Consensus 79 ~~~~~aa~GiTT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~h~~~e~~~~~~~~~l~~~~-~~g~~~ 157 (376)
T TIGR02318 79 HDKQLAAAGITTVFDALALGDTESGGRRPDNLRRMIDAISEARDRGLLRADHRLHLRCELPNEEVLPELEELI-DDPRVD 157 (376)
T ss_pred HHHHHhhCCcceEEeeEEecccCCcCccHHHHHHHHHHHHHhhhcCchhhhceeEEEEEecCccHHHHHHHHh-cCCCcC
Confidence 99999999999999997432 2323334343333 455544 88999999998766777788999996 469999
Q ss_pred EEEEEeeCCC--cCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHH
Q psy6858 168 FKTFMAYKGL--YMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACT 245 (592)
Q Consensus 168 ~k~~~~~~~~--~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~ 245 (592)
||.||..... ...+++.+++.+.. +.| .+|+|+..++.....+. +.. ..+++.+++.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g---~~~~e~~~~~~~~~~~~---~~~-------------~~e~i~~~v~ 216 (376)
T TIGR02318 158 LISLMDHTPGQRQFRDLEKYREYYRG--KRG---LSDDEFDEIVEERIARR---AEY-------------GLANRSEIAA 216 (376)
T ss_pred EEEEeCCCCCcccccCHHHHHHHHHh--hcC---CCHHHHHHHHHHHHHHH---hhc-------------cHHHHHHHHH
Confidence 9999975331 23566667776654 666 78999877655333221 100 1478889999
Q ss_pred HhcccCCCEEEEecc-cHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCccccccc-ceecC-CCCCCC-C
Q psy6858 246 IANQVDCPLYVVHIM-SKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAA-HVLSP-PLRPDE-T 321 (592)
Q Consensus 246 la~~~~~pl~i~hv~-s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~~~~~-~~~~p-plr~~~-~ 321 (592)
+|+..|+|+ ..|.. +. +.++.+++. |+ .+. |.. .+..........+.. ..+.| ++|... .
T Consensus 217 ~A~~~G~~v-~sH~~~~~---e~i~~a~~~----Gv--~~~-E~~-----~t~e~a~~~~~~G~~v~~~~p~~~r~~~~~ 280 (376)
T TIGR02318 217 LARARGIPL-ASHDDDTP---EHVAEAHDL----GV--TIS-EFP-----TTLEAAKEARSLGMQILMGAPNIVRGGSHS 280 (376)
T ss_pred HHHHCCCeE-EEecCCCH---HHHHHHHHC----CC--Chh-ccC-----CCHHHHHHHHHcCCeEEECCcccccccccc
Confidence 999999998 56763 43 356777776 77 221 110 000000000111112 12334 566521 2
Q ss_pred CHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHHHc
Q psy6858 322 TPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIF 401 (592)
Q Consensus 322 ~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~l 401 (592)
....+++++..|..++++|||.+... +...+.......++++.++++++|.|||++|
T Consensus 281 ~~~~l~~~~~~G~~~~l~SD~~p~~~-----------------------l~~~~~~~~~~~gl~~~~al~~~T~npA~~l 337 (376)
T TIGR02318 281 GNLSARELAHEGLLDVLASDYVPASL-----------------------LLAAFQLADDVEGIPLPQAVKMVTKNPARAV 337 (376)
T ss_pred chHHHHHHHHCCCcEEEEcCCCcHHH-----------------------HHHHHHHHHhhcCCCHHHHHHHHhHHHHHHc
Confidence 36789999999999999999976321 2223333333346899999999999999999
Q ss_pred CCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEEECCEEEE
Q psy6858 402 NLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCV 463 (592)
Q Consensus 402 gl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv~GkvV~ 463 (592)
|++ ++|+|++|++|||++||+... . -.+..||++|++||
T Consensus 338 gl~-~~G~I~~G~~ADlvvvd~~~~--~--------------------~~v~~v~~~G~~v~ 376 (376)
T TIGR02318 338 GLS-DRGSIAPGKRADLVRVHRVDG--V--------------------PRIRAVWRAGRRVY 376 (376)
T ss_pred CCC-CCCcCCCCCcccEEEEcCCCC--C--------------------ccceEEEECCEEeC
Confidence 994 789999999999999998410 0 14678999999986
No 35
>PRK07228 N-ethylammeline chlorohydrolase; Provisional
Probab=100.00 E-value=2.4e-35 Score=320.62 Aligned_cols=379 Identities=20% Similarity=0.263 Sum_probs=234.0
Q ss_pred ccEEEEccEEEcCCC---ceeeEEEEECCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCcccccCCC--------
Q psy6858 19 NRLLIKNGKVVNADK---ISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELELMGA-------- 87 (592)
Q Consensus 19 ~~llIkng~Iv~~d~---~~~~dV~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~~-------- 87 (592)
|+++|+|++|++++. ..+++|+|+||+|++|++....+.+.++||++|++|||||||+|+|+....+..
T Consensus 1 ~~~~i~~~~vi~~~~~~~~~~g~V~I~dg~I~~vg~~~~~~~~~~vID~~G~~vlPGlId~H~H~~~~~~~g~~~~~~~~ 80 (445)
T PRK07228 1 MTILIKNAGIVTMNAKREIVDGDVLIEDDRIAAVGDRLDLEDYDDHIDATGKVVIPGLIQGHIHLCQTLFRGIADDLELL 80 (445)
T ss_pred CeEEEEccEEEecCCCcEecccEEEEECCEEEEecCCcccCcCCeEEeCCCCEEecCEEecccCCccccceeccCCCCHH
Confidence 679999999998763 457999999999999998654433678999999999999999999996543211
Q ss_pred -------------CChhhHHH----HHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHh-ccCceeeeecc--ccccC
Q psy6858 88 -------------TSVDDFYH----GTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKA-DEKVCCDYALH--VGITW 147 (592)
Q Consensus 88 -------------~~~d~~~~----~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~--~~~~~ 147 (592)
.++++.+. +...+|++||||++|+..........++..+...+. .....++++.+ .....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~e~L~~GvTtv~d~~~~~~~~~~~~a~~~~g~r~~~~~~~~~~~~~~p~~~~~ 160 (445)
T PRK07228 81 DWLKDRIWPLEAAHDAESMYYSALLGIGELIESGTTTIVDMESVHHTDSAFEAAGESGIRAVLGKVMMDYGDDVPEGLQE 160 (445)
T ss_pred HHHHhhhhhhhhhCCHHHHHHHHHHHHHHHHhcCceEEEccccccChHHHHHHHHHcCCeEEEecceecCCcCCCccccc
Confidence 12223332 333557899999999864322112222222221111 11122223221 01111
Q ss_pred CChHHHHHHHHHHHHc-CCc--EEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCC
Q psy6858 148 WSDQVQQEMAELCEKH-GVN--SFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGP 224 (592)
Q Consensus 148 ~~~~~~~~~~~lv~~~-Gv~--~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p 224 (592)
...+..++...+++.. |.. .+...++++....+++++|.++++.|+++|+++++|+...........+ ..|..
T Consensus 161 ~~~~~l~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~e~~~~~~~~~~--~~g~~-- 236 (445)
T PRK07228 161 DTEASLAESVRLLEKWHGADNGRIRYAFTPRFAVSCTEELLRGVRDLADEYGVRIHTHASENRGEIETVEE--ETGMR-- 236 (445)
T ss_pred cHHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHH--HhCCC--
Confidence 1223445555555542 443 2333345555567889999999999999999999998443211111111 11221
Q ss_pred CCccCCCcHHHHHHHHHHHHHHhcccCCCEEEEecc--cHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCC
Q psy6858 225 EGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIM--SKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPC 302 (592)
Q Consensus 225 ~~~~~s~p~~~e~eav~~~i~la~~~~~pl~i~hv~--s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~ 302 (592)
+ ++ -+.-....+.++.+.|+. +.+. ++.+++. |+ .+. .|+.. .+.
T Consensus 237 -------~--~~------~l~~~g~~~~~~~l~H~~~~~~~~---~~~~~~~----g~--~v~--~~P~~------~~~- 283 (445)
T PRK07228 237 -------N--IH------YLDEVGLTGEDLILAHCVWLDEEE---REILAET----GT--HVT--HCPSS------NLK- 283 (445)
T ss_pred -------H--HH------HHHHCCCCCCCcEEEEEecCCHHH---HHHHHHc----CC--eEE--EChHH------hhh-
Confidence 0 00 111122346788888988 4443 3444555 77 442 22211 000
Q ss_pred cccccccceecCCCCCCCCCHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccC-
Q psy6858 303 TWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVP- 381 (592)
Q Consensus 303 ~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~- 381 (592)
. ......++++++.|+.+++|||+.+.+..... |. +.++...+++....
T Consensus 284 --~--------------~~~~~p~~~~~~~Gv~v~lGtD~~~~~~~~~~-----~~---------~~~~~~~~~~~~~~~ 333 (445)
T PRK07228 284 --L--------------ASGIAPVPDLLERGINVALGADGAPCNNTLDP-----FT---------EMRQAALIQKVDRLG 333 (445)
T ss_pred --c--------------ccccCcHHHHHHCCCeEEEcCCCCccCCCccH-----HH---------HHHHHHHHhhhccCC
Confidence 0 11223466899999999999998765322111 11 45555555544322
Q ss_pred -CCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeE---EeeeeeEEEE
Q psy6858 382 -GILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLV---CHGVPEYVIV 457 (592)
Q Consensus 382 -~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~---~~g~~~~Viv 457 (592)
..+++.++++++|.|||++||+++++|+|++|+.|||||+|.+.....+... .+|+.... ....|..||+
T Consensus 334 ~~~~s~~~al~~~T~~~A~~lg~~~~~G~l~~G~~ADlvvld~~~~~~~p~~~------~~~~~~~~~~~~~~~v~~v~v 407 (445)
T PRK07228 334 PTAMPARTVFEMATLGGAKAAGFEDEIGSLEEGKKADLAILDLDGLHATPSHG------VDVLSHLVYAAHGSDVETTMV 407 (445)
T ss_pred CcccCHHHHHHHHHHHHHHHhCCCCCccccCCCCccCEEEEcCCCcccCCCcc------cCHHHHhheeCCCCCeeEEEE
Confidence 4689999999999999999999888999999999999999998654443320 12322221 2347899999
Q ss_pred CCEEEEECCeeee
Q psy6858 458 GGRVCVDEGNLRV 470 (592)
Q Consensus 458 ~GkvV~~~g~l~~ 470 (592)
+|++||++|+++.
T Consensus 408 ~G~~v~~~g~~~~ 420 (445)
T PRK07228 408 DGKIVMEDGELTT 420 (445)
T ss_pred CCEEEEECCeEcc
Confidence 9999999999864
No 36
>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.
Probab=100.00 E-value=3e-35 Score=316.55 Aligned_cols=371 Identities=22% Similarity=0.323 Sum_probs=236.9
Q ss_pred EEEEccEEEcCC---CceeeEEEEECCEEEEeecCCCCC--CCCeEEecCCCEEeeCccccCcCcccccC-C--------
Q psy6858 21 LLIKNGKVVNAD---KISDLDIYIENGVIQQLGRNLIVP--GGVRVIDAAGSYVIPGGIDPHTHFELELM-G-------- 86 (592)
Q Consensus 21 llIkng~Iv~~d---~~~~~dV~I~dG~I~~Ig~~~~~~--~~~~vIDa~G~~V~PG~ID~HtH~~~~~~-~-------- 86 (592)
++|+|++|++++ ...+++|+|+||||++|+++...+ .+.++||++|++|||||||+|+|+.++.. +
T Consensus 1 ~~i~~~~v~~~~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~~viD~~g~~i~PGlid~H~Hl~~~~~~~~~~~~~~~ 80 (411)
T cd01298 1 ILIRNGTIVTTDPRRVLEDGDVLVEDGRIVAVGPALPLPAYPADEVIDAKGKVVMPGLVNTHTHLAMTLLRGLADDLPLM 80 (411)
T ss_pred CeEEeeEEEEeCCcceeecceEEEECCEEEEecCccccccCCcCeEEeCCCCEEccCccccccchhhHHhhcccCCCCHH
Confidence 589999999874 345799999999999999875542 46789999999999999999999965322 0
Q ss_pred ------------CCChhhHHHHHH----HHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccccccC---
Q psy6858 87 ------------ATSVDDFYHGTK----AAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVGITW--- 147 (592)
Q Consensus 87 ------------~~~~d~~~~~~~----~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--- 147 (592)
..+.++++..++ .++++||||++|+..... ....++..+ ...+..+.+.. +....
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~-~~~~~~~~~----~g~r~~~~~~~-~~~~~~~~ 154 (411)
T cd01298 81 EWLKDLIWPLERLLTEEDVYLGALLALAEMIRSGTTTFADMYFFYP-DAVAEAAEE----LGIRAVLGRGI-MDLGTEDV 154 (411)
T ss_pred HHHHhhhhhhhhcCCHHHHHHHHHHHHHHHHhcCccEEECccccch-HHHHHHHHH----hCCeEEEEcce-ecCCCccc
Confidence 123455655444 456899999999865432 122222222 12222222222 11111
Q ss_pred -CChHHHHHHHHHHHH---cCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEec-CchhhhHHHHHHHHHcCCC
Q psy6858 148 -WSDQVQQEMAELCEK---HGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHA-ENGEIIDKNTQKLLAAGIK 222 (592)
Q Consensus 148 -~~~~~~~~~~~lv~~---~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHa-e~~~~i~~~~~~~~~~G~~ 222 (592)
......++..+++++ .|...+|++++.+....+++++|.++++.|+++|+++.+|+ ++......... ..|..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~---~~~~~ 231 (411)
T cd01298 155 EETEEALAEAERLIREWHGAADGRIRVALAPHAPYTCSDELLREVAELAREYGVPLHIHLAETEDEVEESLE---KYGKR 231 (411)
T ss_pred ccHHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCccCCHHHHHHHHHHHHHcCCcEEEEecCCHHHHHHHHH---HhCCC
Confidence 123344555566544 24678899988877777899999999999999999999996 44332211111 11111
Q ss_pred CCCCccCCCcHHHHHHHHHHHHHHhcccCCCEEEEecccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCC
Q psy6858 223 GPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPC 302 (592)
Q Consensus 223 ~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~ 302 (592)
.+.... -....++++.+.|+..-.. +.++.+++. |+ .+ .+|+..-. .
T Consensus 232 ----------------~~~~~~-~~~~~~~~~~i~H~~~l~~-~~~~~l~~~----gi--~~--~~~p~~~~------~- 278 (411)
T cd01298 232 ----------------PVEYLE-ELGLLGPDVVLAHCVWLTD-EEIELLAET----GT--GV--AHNPASNM------K- 278 (411)
T ss_pred ----------------HHHHHH-HcCCCCCCeEEEEecCCCH-HHHHHHHHc----CC--eE--EEChHHhh------h-
Confidence 001111 1223357777788775432 346666666 76 33 33332100 0
Q ss_pred cccccccceecCCCCCCCCCHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccC-
Q psy6858 303 TWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVP- 381 (592)
Q Consensus 303 ~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~- 381 (592)
+ . ...+| +.++++.|+.+++|||++........ | -+.++...+.+....
T Consensus 279 -~--~---~~~~~----------~~~~~~~Gv~~~~GsD~~~~~~~~~~-----~---------~~~~~~~~~~~~~~~~ 328 (411)
T cd01298 279 -L--A---SGIAP----------VPEMLEAGVNVGLGTDGAASNNNLDM-----F---------EEMRLAALLQKLAHGD 328 (411)
T ss_pred -h--h---hCCCC----------HHHHHHCCCcEEEeCCCCccCCCcCH-----H---------HHHHHHHHHhccccCC
Confidence 0 0 01133 44789999999999998754321111 1 134444444333322
Q ss_pred -CCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEEECCE
Q psy6858 382 -GILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGR 460 (592)
Q Consensus 382 -~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv~Gk 460 (592)
..+++.++++++|.|||++||++ ++|+|++|++|||||||.+..+.++.+.+.+...+.. ..+.+..||++|+
T Consensus 329 ~~~~~~~~al~~~T~~~A~~lg~~-~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~-----~~~~v~~v~~~G~ 402 (411)
T cd01298 329 PTALPAEEALEMATIGGAKALGLD-EIGSLEVGKKADLILIDLDGPHLLPVHDPISHLVYSA-----NGGDVDTVIVNGR 402 (411)
T ss_pred CCcCCHHHHHHHHHhhHHHHhCCc-cCCCcCCCccCCEEEEeCCCCccCCccchhhHheEec-----CCCCeeEEEECCE
Confidence 26899999999999999999997 8999999999999999998766655443333321111 2458999999999
Q ss_pred EEEECCeee
Q psy6858 461 VCVDEGNLR 469 (592)
Q Consensus 461 vV~~~g~l~ 469 (592)
+||++|+++
T Consensus 403 ~v~~~~~~~ 411 (411)
T cd01298 403 VVMEDGELL 411 (411)
T ss_pred EEEECCEeC
Confidence 999999863
No 37
>PRK06687 chlorohydrolase; Validated
Probab=100.00 E-value=2.7e-34 Score=309.85 Aligned_cols=374 Identities=18% Similarity=0.210 Sum_probs=236.3
Q ss_pred EEEEccEEEcCCCc----eeeEEEEECCEEEEeecCCCC--CCCCeEEecCCCEEeeCccccCcCcccccCC--------
Q psy6858 21 LLIKNGKVVNADKI----SDLDIYIENGVIQQLGRNLIV--PGGVRVIDAAGSYVIPGGIDPHTHFELELMG-------- 86 (592)
Q Consensus 21 llIkng~Iv~~d~~----~~~dV~I~dG~I~~Ig~~~~~--~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~-------- 86 (592)
++|+|++|++.+.. .+++|+|+||+|++||+.... +...++||++|++|||||||+|+|+.+..+.
T Consensus 2 ~~~~n~~vvt~d~~~~~~~~g~VlV~~g~I~aVg~~~~~~~~~~~~viD~~g~~v~PGlIn~H~H~~~~~~rg~~~~~~~ 81 (419)
T PRK06687 2 KVFQHVNIVTCDQDFHVYLDGILAVKDSQIVYVGQDKPAFLEQAEQIIDYQGAWIMPGLVNCHTHSAMTGLRGIRDDSNL 81 (419)
T ss_pred cceEeeEEEEeCCCceEecCcEEEEECCEEEEecCcccccccccCeEEeCCCCEEccceeeeccCCCccccccccCCCCH
Confidence 58999999987653 258999999999999985432 2356899999999999999999999664331
Q ss_pred -------------CCChhhHHHHHHH----HHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccc--cccC
Q psy6858 87 -------------ATSVDDFYHGTKA----AVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHV--GITW 147 (592)
Q Consensus 87 -------------~~~~d~~~~~~~~----ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~ 147 (592)
..++++.+.+++. ++++||||+.|+..+ .+......++...+. +.++.++... ....
T Consensus 82 ~~wl~~~~~~~~~~~~~~~~~~~~~~a~~e~l~~GvTTv~d~~~~-~~~~~~~~~~a~~~~---Gir~~~~~~~~~~~~~ 157 (419)
T PRK06687 82 HEWLNDYIWPAESEFTPDMTTNAVKEALTEMLQSGTTTFNDMYNP-NGVDIQQIYQVVKTS---KMRCYFSPTLFSSETE 157 (419)
T ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHHHhcCcceeehhhcc-ccccHHHHHHHHHHh---CCceEeccccccCCcc
Confidence 1234445554444 488999999998643 222333333333332 2333333321 1122
Q ss_pred CChHHHHHHHHHHHH---cCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCC
Q psy6858 148 WSDQVQQEMAELCEK---HGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGP 224 (592)
Q Consensus 148 ~~~~~~~~~~~lv~~---~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p 224 (592)
..++..++..+++++ .+...++..++++..+.++++.+.++++.|+++|+++++|+.......... +...|..
T Consensus 158 ~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~s~e~l~~~~~~A~~~g~~i~~H~~e~~~e~~~~--~~~~g~~-- 233 (419)
T PRK06687 158 TTAETISRTRSIIDEILKYKNPNFKVMVAPHSPYSCSRDLLEASLEMAKELNIPLHVHVAETKEESGII--LKRYGKR-- 233 (419)
T ss_pred cHHHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHH--HHHHCcC--
Confidence 223444555565543 234568899999999999999999999999999999999975542111111 1111211
Q ss_pred CCccCCCcHHHHHHHHHHHHHHhcccCCCEEEEecccHHHHHHHHHHHHHHHhcCCceeee-eecccceeecCCCCCCCc
Q psy6858 225 EGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLY-GETLAAAVGTHANQIPCT 303 (592)
Q Consensus 225 ~~~~~s~p~~~e~eav~~~i~la~~~~~pl~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~-~e~~~~~l~~d~~~~~~~ 303 (592)
|. + .+.-....+-+..+.|+..-. .+.++.+++. |+ .+. +......+
T Consensus 234 -------~~----~----~l~~~g~l~~~~~~~H~~~~~-~~~~~~la~~----g~--~v~~~P~sn~~l---------- 281 (419)
T PRK06687 234 -------PL----A----FLEELGYLDHPSVFAHGVELN-EREIERLASS----QV--AIAHNPISNLKL---------- 281 (419)
T ss_pred -------HH----H----HHHHcCCCCCCeEEEEEecCC-HHHHHHHHHc----CC--eEEECcHHhhhh----------
Confidence 10 0 011112233445556655332 2234555555 77 332 22111110
Q ss_pred ccccccceecCCCCCCCCCHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhcc--C
Q psy6858 304 WHDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVV--P 381 (592)
Q Consensus 304 ~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~--~ 381 (592)
....+|+ .++++.|+.+++|||..+.+....++ . +.++...+++... .
T Consensus 282 ------~~g~~p~----------~~~~~~Gv~v~lGtD~~~~~~~~~~~-----~---------~~~~~~~~~~~~~~~~ 331 (419)
T PRK06687 282 ------ASGIAPI----------IQLQKAGVAVGIATDSVASNNNLDMF-----E---------EGRTAALLQKMKSGDA 331 (419)
T ss_pred ------ccCCCcH----------HHHHHCCCeEEEeCCCCCCCCChhHH-----H---------HHHHHHHHhccccCCC
Confidence 0011333 37899999999999985433222221 1 4455545544321 2
Q ss_pred CCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEee---eeeEEEEC
Q psy6858 382 GILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHG---VPEYVIVG 458 (592)
Q Consensus 382 ~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g---~~~~Viv~ 458 (592)
..+++.++++++|.|||+++|+++++|+|++|+.||||++|.+..... ....+|+..+.+.+ .|..||++
T Consensus 332 ~~~~~~~~l~~aT~~gA~~lg~~~~~G~l~~G~~ADlv~~d~~~~~~~-------~p~~~~~~~lv~~~~~~~v~~v~v~ 404 (419)
T PRK06687 332 SQFPIETALKVLTIEGAKALGMENQIGSLEVGKQADFLVIQPQGKIHL-------QPQENMLSHLVYAVKSSDVDDVYIA 404 (419)
T ss_pred ccCCHHHHHHHHhHHHHHHcCCCCCCcccCCCccCCEEEECCCCCCCc-------CCccCHHHHhheeCCCCCccEEEEC
Confidence 358999999999999999999987899999999999999998631111 12245666655554 68999999
Q ss_pred CEEEEECCeeeec
Q psy6858 459 GRVCVDEGNLRVA 471 (592)
Q Consensus 459 GkvV~~~g~l~~~ 471 (592)
||+|++||+++..
T Consensus 405 G~~v~~~g~~~~~ 417 (419)
T PRK06687 405 GEQVVKQGQVLTV 417 (419)
T ss_pred CEEEEECCeEecC
Confidence 9999999998653
No 38
>PRK15493 5-methylthioadenosine/S-adenosylhomocysteine deaminase; Provisional
Probab=100.00 E-value=1.7e-33 Score=304.31 Aligned_cols=378 Identities=17% Similarity=0.196 Sum_probs=235.0
Q ss_pred ccEEEEccEEEcCCC----ceeeEEEEECCEEEEeecCCC--CCCCCeEEecCCCEEeeCccccCcCcccccC-------
Q psy6858 19 NRLLIKNGKVVNADK----ISDLDIYIENGVIQQLGRNLI--VPGGVRVIDAAGSYVIPGGIDPHTHFELELM------- 85 (592)
Q Consensus 19 ~~llIkng~Iv~~d~----~~~~dV~I~dG~I~~Ig~~~~--~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~------- 85 (592)
|+++|+|++|++.+. ..+++|+|+||+|++||+... .+.+.++||++|++|||||||+|+|+.+..+
T Consensus 1 ~~~li~~~~v~t~~~~~~~~~~g~V~i~~g~I~~vg~~~~~~~~~~~~viD~~g~~i~PGlVn~H~H~~~~~~rg~~~~~ 80 (435)
T PRK15493 1 MKTTYVNATIVTMNEQNEVIENGYIIVENDQIIDVNSGEFASDFEVDEVIDMKGKWVLPGLVNTHTHVVMSLLRGIGDDM 80 (435)
T ss_pred CeEEEEccEEEEeCCCCcEecCcEEEEECCEEEEEcCccccccCCCCeEEeCCCCEEccceeecccCccchhhhccCCCC
Confidence 578999999997653 236899999999999998532 2236789999999999999999999954211
Q ss_pred --------------CCCChhhHHHH----HHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccc-ccc
Q psy6858 86 --------------GATSVDDFYHG----TKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHV-GIT 146 (592)
Q Consensus 86 --------------~~~~~d~~~~~----~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~ 146 (592)
...++++.+.+ ...+|.+||||+.|+...... ......+...+ ...+.+..+.+.. ...
T Consensus 81 ~l~~wl~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~-~~~~~~~a~~~-~GiR~~~~~~~~~~~~~ 158 (435)
T PRK15493 81 LLQPWLETRIWPLESQFTPELAVASTELGLLEMVKSGTTSFSDMFNPIGV-DQDAIMETVSR-SGMRAAVSRTLFSFGTK 158 (435)
T ss_pred CHHHHHHhchhhchhcCCHHHHHHHHHHHHHHHHhCCccEEEcccccccc-CHHHHHHHHHH-cCCcEEEeeeecCCCCC
Confidence 11234444433 345578999999998643211 11111222222 2223322222211 111
Q ss_pred CCChHHHHHHHHHHHHc-C-CcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCC
Q psy6858 147 WWSDQVQQEMAELCEKH-G-VNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGP 224 (592)
Q Consensus 147 ~~~~~~~~~~~~lv~~~-G-v~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p 224 (592)
.......++..++++.. + ...++..++++..+.++++.|.++++.|+++|+++++|+........... ...|..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~t~s~e~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~--~~~g~~-- 234 (435)
T PRK15493 159 EDEKKAIEEAEKYVKRYYNESGMLTTMVAPHSPYTCSTELLEECARIAVENQTMVHIHLSETEREVRDIE--AQYGKR-- 234 (435)
T ss_pred ccHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCCCcCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHH--HHhCCC--
Confidence 11223344555555442 2 34578888899999999999999999999999999999754322111111 111211
Q ss_pred CCccCCCcHHHHHHHHHHHHHHhcccCCCEEEEecccHHHHHHHHHHHHHHHhcCCceee-eeecccceeecCCCCCCCc
Q psy6858 225 EGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTL-YGETLAAAVGTHANQIPCT 303 (592)
Q Consensus 225 ~~~~~s~p~~~e~eav~~~i~la~~~~~pl~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v-~~e~~~~~l~~d~~~~~~~ 303 (592)
|. +.+. -....+-+..+.|+..-.. +.++.+++. |. .| +++.....+
T Consensus 235 -------~~----~~l~----~~Gll~~~~~~~H~~~l~~-~d~~~la~~----g~--~v~~~P~sn~~l---------- 282 (435)
T PRK15493 235 -------PV----EYAA----SCGLFKRPTVIAHGVVLND-NERAFLAEH----DV--RVAHNPNSNLKL---------- 282 (435)
T ss_pred -------HH----HHHH----HcCCCCCCcEEEEeecCCH-HHHHHHHHc----CC--eEEEChHHHHHH----------
Confidence 11 1111 1123345666666653322 223444444 76 33 222221110
Q ss_pred ccccccceecCCCCCCCCCHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhcc--C
Q psy6858 304 WHDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVV--P 381 (592)
Q Consensus 304 ~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~--~ 381 (592)
+ ...+| +.++++.|+.+++|||..+.+....++ . +.+++.++++++. .
T Consensus 283 ---~---~g~~p----------~~~~~~~Gv~v~lGtD~~~~~~~~d~~-----~---------~~~~a~~~~~~~~~~~ 332 (435)
T PRK15493 283 ---G---SGIAN----------VKAMLEAGIKVGIATDSVASNNNLDMF-----E---------EMRIATLLQKGIHQDA 332 (435)
T ss_pred ---h---cCccc----------HHHHHHCCCeEEEccCccccCCCcCHH-----H---------HHHHHHHHHhhccCCC
Confidence 0 01123 347999999999999986543222221 1 5667677766543 3
Q ss_pred CCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEee---eeeEEEEC
Q psy6858 382 GILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHG---VPEYVIVG 458 (592)
Q Consensus 382 ~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g---~~~~Viv~ 458 (592)
..+++.++++++|.|+|++||+. ++|+|++|+.||||+||.+....+. ...+|+..+.+++ .|..||++
T Consensus 333 ~~~~~~~~l~~aT~~gA~~lg~~-~~G~l~~G~~ADlvv~d~~~~~~~~-------p~~d~~~~lv~~~~~~~V~~v~V~ 404 (435)
T PRK15493 333 TALPVETALTLATKGAAEVIGMK-QTGSLEVGKCADFITIDPSNKPHLQ-------PADEVLSHLVYAASGKDISDVIIN 404 (435)
T ss_pred CcCCHHHHHHHHhHHHHHHcCCC-CCCccCCCCcCCEEEEcCCCCCCcC-------CccChHHhEEEeCCCCCccEEEEC
Confidence 57899999999999999999994 6899999999999999975322211 1245666666553 68899999
Q ss_pred CEEEEECCeeeecC
Q psy6858 459 GRVCVDEGNLRVAQ 472 (592)
Q Consensus 459 GkvV~~~g~l~~~~ 472 (592)
||+|++||+++...
T Consensus 405 G~~v~~~g~~~~~d 418 (435)
T PRK15493 405 GKRVVWNGECKTLD 418 (435)
T ss_pred CEEEEECCeECCCC
Confidence 99999999997543
No 39
>PRK12394 putative metallo-dependent hydrolase; Provisional
Probab=100.00 E-value=1.8e-33 Score=299.13 Aligned_cols=350 Identities=17% Similarity=0.169 Sum_probs=230.8
Q ss_pred cccEEEEccEEEcCCC--ceeeEEEEECCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCcccccCCCCChhhHHH
Q psy6858 18 QNRLLIKNGKVVNADK--ISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELELMGATSVDDFYH 95 (592)
Q Consensus 18 ~~~llIkng~Iv~~d~--~~~~dV~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~~~~~d~~~~ 95 (592)
+++++|+|++|+++.. ...++|+|+||+|++|++... +.+.++||++|++|||||||+|+|+..+.. ++..+
T Consensus 2 ~~~~li~~~~i~~~~~~~~~~~~i~i~~g~I~~i~~~~~-~~~~~viD~~g~~v~PGliD~H~H~~~~g~-----~~~~~ 75 (379)
T PRK12394 2 KNDILITNGHIIDPARNINEINNLRIINDIIVDADKYPV-ASETRIIHADGCIVTPGLIDYHAHVFYDGT-----EGGVR 75 (379)
T ss_pred CccEEEECcEEECCCCCcccccEEEEECCEEEEEcCCCC-CCCCeEEECCCCEEECCEEEeeecCCCCCc-----ccccC
Confidence 3679999999998652 346799999999999987532 235689999999999999999999965432 12233
Q ss_pred HHHHHHcCCeeEEeccccCCCCccHHHHHHHHH---HHhccCceeeeeccccccC--C---ChH--HHHHHHHHHHH--c
Q psy6858 96 GTKAAVAGGTTTIIDFALPRKGESLIKTYESWR---QKADEKVCCDYALHVGITW--W---SDQ--VQQEMAELCEK--H 163 (592)
Q Consensus 96 ~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~---~~~~~~~~~~~~~~~~~~~--~---~~~--~~~~~~~lv~~--~ 163 (592)
....++++||||++|+... +....+.+.+.. .....+++.+++++..... . ... ..+++.+++++ .
T Consensus 76 ~~~~~l~~G~Ttv~d~g~~--~~~~~~~~~~~~~a~~~~gira~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (379)
T PRK12394 76 PDMYMPPNGVTTVVDAGSA--GTANFDAFYRTVICASKVRIKAFLTVSPPGQTWSGYQENYDPDNIDENKIHALFRQYRN 153 (379)
T ss_pred HHHHHHhCCccEEEECCCC--CcccHHHHHHHHhhhhcceeeeEEeeecccccccCcccccChhHCCHHHHHHHHHHCcC
Confidence 4556899999999998643 222232333321 1122345566666543221 1 111 13577777765 4
Q ss_pred CCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHH
Q psy6858 164 GVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRA 243 (592)
Q Consensus 164 Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~ 243 (592)
++.++|+++........+++.+.+.++.|+++|+++++|+++....... .
T Consensus 154 ~~~g~ki~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~iH~~e~~~~~~~------------------------------~ 203 (379)
T PRK12394 154 VLQGLKLRVQTEDIAEYGLKPLTETLRIANDLRCPVAVHSTHPVLPMKE------------------------------L 203 (379)
T ss_pred cEEEEEEEEecccccccchHHHHHHHHHHHHcCCCEEEEeCCCCccHHH------------------------------H
Confidence 6777887764332124678899999999999999999998764321111 1
Q ss_pred HHHhcccCCCEEEE-------ecccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCcccccccceecCCC
Q psy6858 244 CTIANQVDCPLYVV-------HIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPL 316 (592)
Q Consensus 244 i~la~~~~~pl~i~-------hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~~~~~~~~~ppl 316 (592)
+.+...-....|++ |....+..+.+..++++ |+ .+.... +
T Consensus 204 ~~~l~~g~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~----G~--~~~~~~-------------------------g-- 250 (379)
T PRK12394 204 VSLLRRGDIIAHAFHGKGSTILTEEGAVLAEVRQARER----GV--IFDAAN-------------------------G-- 250 (379)
T ss_pred HHhcCCCCEEEecCCCCCCCcCCCCCCChHHHHHHHhC----Ce--EEEecC-------------------------C--
Confidence 11111111111211 12233335556666666 76 221100 0
Q ss_pred CCCCCCHHHHHHHHhcCC-ceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhH
Q psy6858 317 RPDETTPTHLLTLLNENA-LQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTST 395 (592)
Q Consensus 317 r~~~~~~~~l~~~l~~G~-~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~ 395 (592)
+. ..+...+++++..|. ++++|||+++.+..... ...|..++++++ ..++++.++++++|.
T Consensus 251 ~s-~~~~~~~~~~l~~G~~~~~lgTD~~~~~~~~~~----------------~~~l~~~~~~~~-~~~~~~~~~~~~at~ 312 (379)
T PRK12394 251 RS-HFDMNVARRAIANGFLPDIISSDLSTITKLAWP----------------VYSLPWVLSKYL-ALGMALEDVINACTH 312 (379)
T ss_pred cc-ccchHHHHHHHHCCCCceEEECCCCCCCcccCc----------------cchHHHHHHHHH-HcCCCHHHHHHHHHH
Confidence 00 123456778999995 89999999987632110 134556676666 456999999999999
Q ss_pred hHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEee----eeeEEEECCEEEEECC
Q psy6858 396 NAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHG----VPEYVIVGGRVCVDEG 466 (592)
Q Consensus 396 n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g----~~~~Viv~GkvV~~~g 466 (592)
|||++||+++++|+|++|++|||++||.+..+... .+ +.|..++| .|..||++|++||++-
T Consensus 313 ~~a~~~g~~~~~G~i~~G~~ADl~~~~~~~~~~~~---------~d-~~g~~~~~~~~~~v~~t~v~G~~v~~~~ 377 (379)
T PRK12394 313 TPAVLMGMAAEIGTLAPGAFADIAIFKLKNRHVEF---------AD-IHGETLTGTHVLVPQMTIKSGEILYRQI 377 (379)
T ss_pred HHHHHhCCCCCCCccCCCCccCEEEEecCcCccee---------cc-CCCCEEEeeeecceEEEEECCEEEEecC
Confidence 99999999768999999999999999998664421 11 57778888 7999999999999853
No 40
>PRK10657 isoaspartyl dipeptidase; Provisional
Probab=100.00 E-value=6.4e-33 Score=296.41 Aligned_cols=364 Identities=21% Similarity=0.246 Sum_probs=234.2
Q ss_pred ccEEEEccEEEcCCCceeeEEEEECCEEEEeecCCCCC---CCCeEEecCCCEEeeCccccCcCcccccC-CCCChhhHH
Q psy6858 19 NRLLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVP---GGVRVIDAAGSYVIPGGIDPHTHFELELM-GATSVDDFY 94 (592)
Q Consensus 19 ~~llIkng~Iv~~d~~~~~dV~I~dG~I~~Ig~~~~~~---~~~~vIDa~G~~V~PG~ID~HtH~~~~~~-~~~~~d~~~ 94 (592)
|.++|+|++|++.+....++|+|+||+|++|+++...+ .+.++||++|++|+|||||+|+|+..... ......++.
T Consensus 1 ~~~~i~~~~v~~~~~~~~~~i~i~~g~I~~v~~~~~~~~~~~~~~~id~~g~~v~PG~id~H~H~~~~~~~~~~~~~t~~ 80 (388)
T PRK10657 1 MFTLLKNAHVYAPEDLGKKDILIAGGKIIAIADNINIPDIVPDIEVIDASGKILVPGFIDQHVHIIGGGGEGGFSTRTPE 80 (388)
T ss_pred CeEEEEccEEECCCCCcceEEEEECCEEEEecCCccccccCCCCeEEECCCCEEcccceeeeeCcccCCCCcccccCCHH
Confidence 56899999999987666799999999999998754322 35689999999999999999999863211 111223455
Q ss_pred HHHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccccccCCChHHHHHHHHHHHHcCCcEEEEEEee
Q psy6858 95 HGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAY 174 (592)
Q Consensus 95 ~~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~Gv~~~k~~~~~ 174 (592)
.++++++++||||++|+.... .+..+ .+...+..+.+.+.|++.+. +...
T Consensus 81 ~~~~~~~~~GvTTvvd~~~~~----------------------------~~~~~-~~~~~~~~~~~~~~Gv~~~~-~~~~ 130 (388)
T PRK10657 81 VQLSDLTEAGITTVVGLLGTD----------------------------GITRS-MESLLAKARALEEEGISAYM-YTGS 130 (388)
T ss_pred HHHHHHHhCCceEEECCCCCC----------------------------CCCCC-HHHHHHHHHHHHhhCCEEEE-EecC
Confidence 678999999999999985221 01111 11122233333355777773 2221
Q ss_pred CCCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCC-
Q psy6858 175 KGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCP- 253 (592)
Q Consensus 175 ~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~p- 253 (592)
.. .....+.+.+.. +. ....++...|-..+..|...++.+.+..++.+....++..+++
T Consensus 131 ~~---~~~~~~~~~~~~--~~---------------~~~~~~~g~g~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~g~~ 190 (388)
T PRK10657 131 YH---VPVRTITGSIRK--DI---------------VLIDKVIGVGEIAISDHRSSQPTVEELARLAAEARVGGLLSGKA 190 (388)
T ss_pred CC---CCchhhhcchhh--ce---------------ehhhhhhCcceeeeccCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 11 111111111110 00 0011111122233445555566666667777777776666653
Q ss_pred -EEEEecc-cHHHHHHHHHH-HHHHHhcCCceeeeeecccceeecCCCCCC--Ccccccccce----ecCCCCCCC--CC
Q psy6858 254 -LYVVHIM-SKAAGDAMAYK-RKELMKKGKHCTLYGETLAAAVGTHANQIP--CTWHDQAAHV----LSPPLRPDE--TT 322 (592)
Q Consensus 254 -l~i~hv~-s~~a~~~i~~a-r~~~~~~G~~~~v~~e~~~~~l~~d~~~~~--~~~~~~~~~~----~~pplr~~~--~~ 322 (592)
.+++|++ +....+.+..+ ++. |+ .++. ++++|+..+..... ........+. ..|+++... ..
T Consensus 191 ~~i~vH~~~~~~~l~~v~~~l~~~----Gv--~~~~-~~~~H~~~~~~~~~~~~~~~~~G~~~~v~~~~~~~~~~~~~~~ 263 (388)
T PRK10657 191 GIVHVHMGDGKKGLQPLFELLENT----DI--PISQ-FLPTHVNRNEPLFEQALEFAKKGGVIDLTTSDPDFLGEGEVAP 263 (388)
T ss_pred CEEEEEeCCchHHHHHHHHHHHhc----CC--Ccce-eeCcccCCCHHHHHHHHHHHHcCCeEEEecCCCcccccCccCH
Confidence 7788988 57777777444 466 88 7774 88888776433211 1111112222 566666522 34
Q ss_pred HHHHHHHHhcCC---ceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHH
Q psy6858 323 PTHLLTLLNENA---LQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAK 399 (592)
Q Consensus 323 ~~~l~~~l~~G~---~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak 399 (592)
.+.++++++.|. .++++||++..+.... .+..+ .+.|.++++..+..+. .++...+++++++++++|.|||+
T Consensus 264 ~~~l~~~~~~G~~~d~v~l~tD~~~~~~~~~--~~g~~--~~~g~~~~~~l~~~~~-~~~~~~gis~~~~l~~aT~npA~ 338 (388)
T PRK10657 264 AEALKRALEAGVPLSRVTLSSDGNGSLPKFD--EDGNL--VGLGVGSVESLLEEVR-ELVKDEGLPLEDALKPLTSNVAR 338 (388)
T ss_pred HHHHHHHHHcCCChhheEEECCCCCCCceec--cCCCE--eccCcCchhhHHHHHH-HHHHhcCCCHHHHHHHHHHHHHH
Confidence 588999999998 6799999864432111 11111 5677777766655555 45556789999999999999999
Q ss_pred HcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEEECCEEEEECCeeee
Q psy6858 400 IFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRV 470 (592)
Q Consensus 400 ~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv~GkvV~~~g~l~~ 470 (592)
+||+++ +|+|++|++|||++||.+ . .+..|+++|++|++||++..
T Consensus 339 ~lg~~~-~G~l~~G~~AD~vv~~~~-~------------------------~~~~~~~~G~~v~~~~~~~~ 383 (388)
T PRK10657 339 FLKLNG-KGEILPGKDADLLVLDDD-L------------------------RIEQVIAKGKLMVKDGKALV 383 (388)
T ss_pred HhCCCC-CCccCCCCccCEEEECCC-C------------------------CEEEEEECCEEEEECCEEec
Confidence 999976 999999999999999932 1 36799999999999999754
No 41
>cd00375 Urease_alpha Urease alpha-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, fungi and plants. Their primary role is to allow the use of external and internally generated urea as a nitrogen source. The enzyme consists of 3 subunits, alpha, beta and gamma, which can be fused and present on a single protein chain and which in turn forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=100.00 E-value=6.7e-33 Score=296.57 Aligned_cols=355 Identities=23% Similarity=0.259 Sum_probs=240.2
Q ss_pred cccEEEEccEEEcCCCceeeEEEEECCEEEEeecCCC------------CCCCCeEEecCCCEEeeCccccCcCcccccC
Q psy6858 18 QNRLLIKNGKVVNADKISDLDIYIENGVIQQLGRNLI------------VPGGVRVIDAAGSYVIPGGIDPHTHFELELM 85 (592)
Q Consensus 18 ~~~llIkng~Iv~~d~~~~~dV~I~dG~I~~Ig~~~~------------~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~ 85 (592)
.++++|+|++|+|......++|+|+||+|++|++... ...+.++||++|++|+|||||+|+|+..|..
T Consensus 64 ~~DlVI~Na~IiD~~gi~~adI~IkdGrIvaIG~agnp~~~~~v~~~~~~g~~teVIDaeG~iV~PG~ID~HvH~~~P~~ 143 (567)
T cd00375 64 VLDLVITNALIIDYTGIYKADIGIKDGRIVAIGKAGNPDIMDGVTPNMIVGPSTEVIAGEGKIVTAGGIDTHVHFICPQQ 143 (567)
T ss_pred cCCEEEECeEEECCCCcEEEEEEEECCEEEEEecCCCccccccccccccCCCCCeEEECCCCEEeeceEECccCCCCccH
Confidence 4689999999999777778999999999999997532 1135789999999999999999999865421
Q ss_pred CCCChhhHHHHHHHHHcCCeeEEeccccC-------CCCccHHHHHHHHHHHhccCceeeeeccccccCCChHHHHHHHH
Q psy6858 86 GATSVDDFYHGTKAAVAGGTTTIIDFALP-------RKGESLIKTYESWRQKADEKVCCDYALHVGITWWSDQVQQEMAE 158 (592)
Q Consensus 86 ~~~~~d~~~~~~~~ala~GtTti~d~~~~-------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (592)
.++|+++||||++++... .+.......++.+.+.+. ...++++++.... .+..+++.+
T Consensus 144 -----------~~aAlagGVTTvI~~G~gP~~gtnatp~t~g~~~l~~ml~aa~-~~pin~g~~gkg~---~~~l~eL~e 208 (567)
T cd00375 144 -----------IEEALASGITTMIGGGTGPAAGTKATTCTPGPWNIKRMLQAAD-GLPVNIGFLGKGN---GSSPDALAE 208 (567)
T ss_pred -----------HHHHHcCCCcEEEcCCcCcccccCCCCCCCCHHHHHHHHHHhh-cCCceEEEEecCc---cccHHHHHH
Confidence 478999999999996221 112122345555555544 3457888876432 344567777
Q ss_pred HHHHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHH
Q psy6858 159 LCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAE 238 (592)
Q Consensus 159 lv~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~e 238 (592)
+++ .|+.+||++..| ..++..+.++++.|++++.++.+|++..... -.+ |
T Consensus 209 ~~~-aGA~GfK~~eD~----g~t~~~i~~aL~~A~~~dv~VaiHadtlne~-----------------------g~~--E 258 (567)
T cd00375 209 QIE-AGACGLKLHEDW----GATPAAIDTCLSVADEYDVQVAIHTDTLNES-----------------------GFV--E 258 (567)
T ss_pred HHH-cCCEEEEecCCC----CCCHHHHHHHHHHHHhhCCEEEEECCCCCcc-----------------------hHH--H
Confidence 764 599999987654 3589999999999999999999999873311 001 1
Q ss_pred HHHHHHHHhcccCCCEEEEeccc---HHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCcccccccceecCC
Q psy6858 239 AVTRACTIANQVDCPLYVVHIMS---KAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPP 315 (592)
Q Consensus 239 av~~~i~la~~~~~pl~i~hv~s---~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~~~~~~~~~pp 315 (592)
. .++...|.++|+.|..+ ..+.+.|+.+... .+.|.-+.++.++-..+-.+|+.-- ...+-.+|.
T Consensus 259 ----~-t~aa~~gr~iH~~H~egaggghapdi~~~~~~~----nvlp~stnpt~p~t~nt~~e~~dm~---m~~h~l~~~ 326 (567)
T cd00375 259 ----D-TIAAIKGRTIHTYHTEGAGGGHAPDIIKVAGHP----NVLPSSTNPTRPFTVNTLDEHLDML---MVCHHLDPN 326 (567)
T ss_pred ----H-HHHHhcCCeEEEEecCCCCcccchHHHHhcCCC----CcccCCCCCCCCCccCchhhhcCeE---EeecCCCCC
Confidence 1 34556799999999985 3566777766554 5555555666666665555555421 111222332
Q ss_pred CCCC---------CCCHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHH--------hh
Q psy6858 316 LRPD---------ETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWE--------KG 378 (592)
Q Consensus 316 lr~~---------~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~--------~~ 378 (592)
+..| +++..+---+-+.|+...++||...... +.+.....|+ .+
T Consensus 327 ~~~d~~fa~srir~~ti~ae~~l~d~G~~s~~~sDs~~mgr-------------------~ge~~~r~~q~a~k~~~~~g 387 (567)
T cd00375 327 IPEDVAFAESRIRAETIAAEDVLHDLGAISIMSSDSQAMGR-------------------VGEVILRTWQTAHKMKAQRG 387 (567)
T ss_pred CcchhhhhhhhccchhhccchhhhccCcEEEEccchhhcCc-------------------cceeeechHHHHHHHHHhcC
Confidence 2221 2333222224557999999999853211 0111111121 11
Q ss_pred ccC---CCCCHHHH---HHHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEeeee
Q psy6858 379 VVP---GILSPEKF---VAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVP 452 (592)
Q Consensus 379 v~~---~~l~~~e~---v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~ 452 (592)
... ...+..++ |++.|.|||+++|++.++|+|++||.||||||+++. | + ..+
T Consensus 388 ~~~~~~~~~~n~r~~~~L~~~Tin~A~alG~~~~vGSLe~GK~ADlVv~d~~~-----------------f-~----~~p 445 (567)
T cd00375 388 PLPEDSGDADNFRVKRYIAKYTINPAIAHGISHEVGSVEVGKLADLVLWEPAF-----------------F-G----VKP 445 (567)
T ss_pred CCCcccccCchHHHHHHHHHhhHHHHHHcCcccCceeeCCCCccCEEEEcCcc-----------------c-C----CCe
Confidence 111 12455444 999999999999999999999999999999999871 1 1 146
Q ss_pred eEEEECCEEEEEC-Ceeee
Q psy6858 453 EYVIVGGRVCVDE-GNLRV 470 (592)
Q Consensus 453 ~~Viv~GkvV~~~-g~l~~ 470 (592)
..||++|++||.. |....
T Consensus 446 ~~vi~~G~iv~~~~gd~na 464 (567)
T cd00375 446 EMVLKGGFIAYAQMGDPNA 464 (567)
T ss_pred eEEEECCEEEEecCCCccc
Confidence 7999999999988 76544
No 42
>TIGR00856 pyrC_dimer dihydroorotase, homodimeric type. This homodimeric form of dihydroorotase is less common in microbial genomes than a related dihydroorotase that appears in a complex with aspartyltranscarbamoylase or as a homologous domain in multifunctional proteins of pyrimidine biosynthesis in higher eukaryotes.
Probab=100.00 E-value=2.7e-33 Score=291.72 Aligned_cols=328 Identities=15% Similarity=0.105 Sum_probs=255.0
Q ss_pred EEeeCccccCcCcccccCCCCChhhHHHHHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCc--eeeeeccccc
Q psy6858 68 YVIPGGIDPHTHFELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKV--CCDYALHVGI 145 (592)
Q Consensus 68 ~V~PG~ID~HtH~~~~~~~~~~~d~~~~~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~ 145 (592)
+.+|-=-|+|+|+.+. ++...+.-+...|||++++|....+.....+.++.+...+.... .++|.+|..+
T Consensus 2 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~vt~vv~mPnt~P~~~~~e~~~~~~~~~~~~s~~~vDf~~~~~v 73 (341)
T TIGR00856 2 LTIRRPDDWHLHLRDG--------AMLKAVLPYTSEIFSRAIVMPNLAPPVTTVEAAVAYRERILDAVPAGHDFTPLMTL 73 (341)
T ss_pred ceecCccceeeeccCc--------hHHHHHHHHHHhhcCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcceEEEEEE
Confidence 4566677999999765 34444556677789999999776655555677777777776655 4689998888
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEEEEEeeCC---CcCC-CHHHHHHHHHHHHHcCCeEEEecCchh-hhHHHHHHHHHcC
Q psy6858 146 TWWSDQVQQEMAELCEKHGVNSFKTFMAYKG---LYML-SDGELYDAFSAIKNLGAIAMVHAENGE-IIDKNTQKLLAAG 220 (592)
Q Consensus 146 ~~~~~~~~~~~~~lv~~~Gv~~~k~~~~~~~---~~~~-~~~~l~~~~~~a~~~g~~~~vHae~~~-~i~~~~~~~~~~G 220 (592)
..+.+...+++++++++.|+.+||+|+.+.+ .... ++..++++++.|+++|+++.+|+|+.. .+..
T Consensus 74 ~~~~~~~~~Ei~~l~~~~Gv~g~Klf~~~~~~~~~~~v~dd~~l~~~~e~~~e~g~~v~vHaEd~~~~i~~--------- 144 (341)
T TIGR00856 74 YLTDSLTPEELERAKNEGVVRAVKLYPAGATTNSSHGVTDIDAIMPVLEAMEKIGLPLLLHGEVTHGDIDI--------- 144 (341)
T ss_pred ECCCCCCHHHHHHHHHcCCeEEEEEccCCcccCCCcCCCCHHHHHHHHHHHHHcCCeEEEeecCCCCCccc---------
Confidence 6555545688988877669999999975321 1222 457899999999999999999999852 1100
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHH-HHhc-ccCCCEEEEecccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCC
Q psy6858 221 IKGPEGHQLSRPEEVEAEAVTRAC-TIAN-QVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHAN 298 (592)
Q Consensus 221 ~~~p~~~~~s~p~~~e~eav~~~i-~la~-~~~~pl~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~ 298 (592)
. ..|..++.+.+ .+|. ..++++|+.|++++++.+.++++| + .|++|+|++||.++.+
T Consensus 145 ----------~--~~e~~a~~~~i~~lA~~~~~~~~~i~H~st~~~~~~i~~a~------~---~vt~E~~ph~L~l~~~ 203 (341)
T TIGR00856 145 ----------F--DREARFIESVLEPLRQRFPALKVVLEHITTKDAIDYVEDGN------N---RLAATITPQHLMFTRN 203 (341)
T ss_pred ----------c--cchhhhhHHHHHHHHHHccCCeEEEEecCcHHHHHHHHHcC------C---CEEEEEcHHHHhccHH
Confidence 0 00233344333 5554 559999999999999999998773 2 5999999999999998
Q ss_pred CCCCcccccccceecCCCCCCCCCHHHHHHHHhcCCce-EEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHh
Q psy6858 299 QIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQ-TTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEK 377 (592)
Q Consensus 299 ~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~-~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~ 377 (592)
++... ..+..++++||+|. .+++++||+.+.+|.+. +++|||||++..+|.. ..+|+|++|+|..+++++..
T Consensus 204 ~~~~~-~~~~~~k~~PPlR~-~~d~~aL~~~l~~G~id~~i~SDHaP~~~~~K~~-----~~~~~G~~g~e~~l~~~~~~ 276 (341)
T TIGR00856 204 DLLGG-GVNPHLYCLPILKR-NIHQQALLELAASGFPKFFLGTDSAPHARHRKES-----SCGCAGCFSAPTALPSYAEV 276 (341)
T ss_pred HHhcc-CCCCceEEeCCCCC-HHHHHHHHHHHHcCCCCEEEeCCCCCCChhHcCC-----CCCCCCcccHHHHHHHHHHH
Confidence 86431 02456889999998 78999999999999999 6999999999887753 24899999999999998853
Q ss_pred hccCCCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcc-cCeEEeeee
Q psy6858 378 GVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIF-EGLVCHGVP 452 (592)
Q Consensus 378 ~v~~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~-~g~~~~g~~ 452 (592)
+ .++++++++++++|+||||+||+ ++ | +|||+|+ +..++++.+.+++...|+|| .|.++.|+|
T Consensus 277 -~-~~~~~l~~~v~~~s~nPAk~~gl-~~-~------dAdi~~~--~~~~~i~~~~~~s~~~~sp~~~~~~~~~~v 340 (341)
T TIGR00856 277 -F-EEMNALENLEAFCSDNGPQFYGL-PV-N------STKIELV--KKEQQIPESIALTDDTLVPFRAGETLSWSV 340 (341)
T ss_pred -H-hcCCCHHHHHHHHhHhHHHHhCC-CC-C------CceEEEE--eccEEeCchhccCCCCcccccCCcccceee
Confidence 3 34799999999999999999999 54 3 8999999 47899999999999999999 566666654
No 43
>PRK06380 metal-dependent hydrolase; Provisional
Probab=100.00 E-value=7.7e-32 Score=290.73 Aligned_cols=373 Identities=21% Similarity=0.306 Sum_probs=231.4
Q ss_pred ccEEEEccEEEcCCC---ceeeEEEEECCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCcccccC----------
Q psy6858 19 NRLLIKNGKVVNADK---ISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELELM---------- 85 (592)
Q Consensus 19 ~~llIkng~Iv~~d~---~~~~dV~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~---------- 85 (592)
|+++|+|++|++.+. ..+++|+|+||+|++||+... .+.++||++|++|+|||||+|+|+.+...
T Consensus 1 m~~li~~~~v~~~~~~~~~~~~~v~i~~g~I~~ig~~~~--~~~~viD~~g~~v~PG~Vd~H~Hl~~~~~rg~~~~~~l~ 78 (418)
T PRK06380 1 MSILIKNAWIVTQNEKREILQGNVYIEGNKIVYVGDVNE--EADYIIDATGKVVMPGLINTHAHVGMTASKGLFDDVDLE 78 (418)
T ss_pred CeEEEEeeEEEECCCCceeeeeeEEEECCEEEEecCCCC--CCCEEEECCCCEEccCEEeeccCCCccccCCcccCCCHH
Confidence 568999999997652 347899999999999998543 35689999999999999999999965322
Q ss_pred ----------CCCChhhHHHHH----HHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccc-cccCCCh
Q psy6858 86 ----------GATSVDDFYHGT----KAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHV-GITWWSD 150 (592)
Q Consensus 86 ----------~~~~~d~~~~~~----~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 150 (592)
...+.++++.++ ..++++||||+.|+... .+.+.+++.+. ..+.+..+.... .......
T Consensus 79 ~~~~~~~~~~~~~~~e~~~~~~~~~~~e~l~~G~Tt~~d~~~~--~~~~~~a~~~~----G~r~~~~~~~~~~~~~~~~~ 152 (418)
T PRK06380 79 EFLMKTFKYDSKRTREGIYNSAKLGMYEMINSGITAFVDLYYS--EDIIAKAAEEL----GIRAFLSWAVLDEEITTQKG 152 (418)
T ss_pred HHHHHHHhhhhcCCHHHHHHHHHHHHHHHHhcCCeEEEccccC--hHHHHHHHHHh----CCeEEEecccccCCcccccc
Confidence 123445555433 45578999999998532 12222222222 112222222111 0100111
Q ss_pred HHHHHHHHHHHH-cCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccC
Q psy6858 151 QVQQEMAELCEK-HGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQL 229 (592)
Q Consensus 151 ~~~~~~~~lv~~-~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~ 229 (592)
...++.+.+++. .+...++..+++++.+.++++++.++++.|+++|.++++|+.... .+......+.|.+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~--~~~~~~~~~~g~~~------ 224 (418)
T PRK06380 153 DPLNNAENFIREHRNEELVTPSIGVQGIYVANDETYLKAKEIAEKYDTIMHMHLSETR--KEVYDHVKRTGERP------ 224 (418)
T ss_pred hHHHHHHHHHHHhcCCCCeEEEEECCCCccCCHHHHHHHHHHHHHcCCCEEEEeCCcH--HHHHHHHHHhCCCH------
Confidence 122334444432 223346677788888899999999999999999999999986542 11112222334321
Q ss_pred CCcHHHHHHHHHHHHHHhcccCCCEEEEecccHHHHHHHHHHHHHHHhcCCceee-eeecccceeecCCCCCCCcccccc
Q psy6858 230 SRPEEVEAEAVTRACTIANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTL-YGETLAAAVGTHANQIPCTWHDQA 308 (592)
Q Consensus 230 s~p~~~e~eav~~~i~la~~~~~pl~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v-~~e~~~~~l~~d~~~~~~~~~~~~ 308 (592)
+ + . +.-....+.++.+.|+..-.. +.++.+++. |+ .+ +++.....+..
T Consensus 225 -----i--e---~-~~~~g~l~~~~~~~H~~~l~~-~d~~~la~~----g~--~v~~~P~sn~~l~~------------- 273 (418)
T PRK06380 225 -----V--E---H-LEKIGFLNSKLIAAHCVWATY-HEIKLLSKN----GV--KVSWNSVSNFKLGT------------- 273 (418)
T ss_pred -----H--H---H-HHHCCCCCCCeEEEEeecCCH-HHHHHHHHc----CC--EEEECHHHHHhhcc-------------
Confidence 1 1 1 111223345666667664332 334555555 76 32 23222111100
Q ss_pred cceecCCCCCCCCCHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhcc--CCCCCH
Q psy6858 309 AHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVV--PGILSP 386 (592)
Q Consensus 309 ~~~~~pplr~~~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~--~~~l~~ 386 (592)
...+| +.++++.|+.+++|||....+..... |. +.++...+.+... ...+++
T Consensus 274 --~g~~p----------~~~~~~~Gv~v~lGTD~~~~~~~~d~-----~~---------~~~~~~~~~~~~~~~~~~~~~ 327 (418)
T PRK06380 274 --GGSPP----------IPEMLDNGINVTIGTDSNGSNNSLDM-----FE---------AMKFSALSVKNERWDASIIKA 327 (418)
T ss_pred --CCCCc----------HHHHHHCCCeEEEcCCCCcCCCCcCH-----HH---------HHHHHHHHhhhccCCCCcCCH
Confidence 01123 34789999999999997432211111 10 3444443333221 124899
Q ss_pred HHHHHHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEee---eeeEEEECCEEEE
Q psy6858 387 EKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHG---VPEYVIVGGRVCV 463 (592)
Q Consensus 387 ~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g---~~~~Viv~GkvV~ 463 (592)
.++++++|.|+|++||+ ++|+|++|+.||||++|.+.+...+.. ..+|+..+...+ .+..||++|++|+
T Consensus 328 ~~~l~~aT~~gA~~lg~--~~G~l~~G~~ADlvv~d~~~~~~~p~~------~~~~~~~lv~~~~~~~v~~v~v~G~~v~ 399 (418)
T PRK06380 328 QEILDFATINAAKALEL--NAGSIEVGKLADLVILDARAPNMIPTR------KNNIVSNIVYSLNPLNVDHVIVNGKILK 399 (418)
T ss_pred HHHHHHHHHHHHHHhCC--CCCccCCCccCCEEEEeCCCCccCCCC------ccChHHheeecCCCCceeEEEECCEEEE
Confidence 99999999999999999 389999999999999998865444321 245666666554 7999999999999
Q ss_pred ECCeeeecC
Q psy6858 464 DEGNLRVAQ 472 (592)
Q Consensus 464 ~~g~l~~~~ 472 (592)
++|+++...
T Consensus 400 ~~g~~~~~d 408 (418)
T PRK06380 400 ENGRLNGFN 408 (418)
T ss_pred ECCeECccC
Confidence 999997644
No 44
>PRK13309 ureC urease subunit alpha; Reviewed
Probab=100.00 E-value=2e-32 Score=295.96 Aligned_cols=361 Identities=19% Similarity=0.183 Sum_probs=240.6
Q ss_pred cccEEEEccEEEcC-CCceeeEEEEECCEEEEeecCCCC------------CCCCeEEecCCCEEeeCccccCcCccccc
Q psy6858 18 QNRLLIKNGKVVNA-DKISDLDIYIENGVIQQLGRNLIV------------PGGVRVIDAAGSYVIPGGIDPHTHFELEL 84 (592)
Q Consensus 18 ~~~llIkng~Iv~~-d~~~~~dV~I~dG~I~~Ig~~~~~------------~~~~~vIDa~G~~V~PG~ID~HtH~~~~~ 84 (592)
..+++|+|++|+|+ .....+||.|+||+|++|++.... ..+.++||++|++|+|||||+|+|+..|.
T Consensus 67 ~~DlVI~Ng~ViD~~~gi~kaDI~IkdGrI~aIG~~~~p~~~~~v~~~~~~g~~tevIDa~G~iVtPG~ID~HvH~~~P~ 146 (572)
T PRK13309 67 VLDLVITNVTIVDARLGVIKADVGIRDGKIVGIGKSGNPSTMDGVTQGMVVGVSTDAISGEHLILTAAGIDTHIHLISPQ 146 (572)
T ss_pred cCCEEEECeEEEcCCCCEEEEEEEEECCEEEEecCCCccccccccccccccCCCceEEECCCCEEEeCEEEeecccCCcc
Confidence 45899999999985 456789999999999999975321 11478999999999999999999987653
Q ss_pred CCCCChhhHHHHHHHHHcCCeeEEeccc-------cCCCCccHHHHHHHHHHHhccCceeeeeccccccCCChHHHHHHH
Q psy6858 85 MGATSVDDFYHGTKAAVAGGTTTIIDFA-------LPRKGESLIKTYESWRQKADEKVCCDYALHVGITWWSDQVQQEMA 157 (592)
Q Consensus 85 ~~~~~~d~~~~~~~~ala~GtTti~d~~-------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (592)
. .++|+++||||++++. .+.+.......++...+.+. ...++++++... +.. ..+++.
T Consensus 147 ~-----------~~aAl~gGVTTvi~~G~gp~~~~n~~~~t~g~~~i~~~l~~a~-~~pvn~g~~gkg--~~~-~~~~l~ 211 (572)
T PRK13309 147 Q-----------AYHALSNGVTTFFGGGIGPTDGTNGTTVTPGPWNIRQMLRSIE-GLPVNVGILGKG--NSY-GRGPLL 211 (572)
T ss_pred h-----------HHHHHcCceEEEEecCCCCccCCCCCCCCCCHHHHHHHHHHhc-cCCcCEEEEcCC--CCC-CHHHHH
Confidence 1 3579999999999642 11111122334444444444 234777777532 322 236677
Q ss_pred HHHHHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHH
Q psy6858 158 ELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEA 237 (592)
Q Consensus 158 ~lv~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~ 237 (592)
++++ .|+.+||.+..+ ..++..+.++++.|++++.++.+|+++.... .++
T Consensus 212 el~~-aGa~gfk~~~d~----g~t~~~L~~aLe~A~~~gv~VaiH~d~lnE~-----------------------g~v-- 261 (572)
T PRK13309 212 EQAI-AGVAGYKVHEDW----GATAAALRHALRVADEVDIQVAVHTDSLNEC-----------------------GYV-- 261 (572)
T ss_pred HHHh-cCcEEEEecCcC----CcCHHHHHHHHHHHHhcCCEEEEeCCccccc-----------------------hhH--
Confidence 7654 599999987544 3588999999999999999999998874311 011
Q ss_pred HHHHHHHHHhcccCCCEEEEeccc---HHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCcccccccceecC
Q psy6858 238 EAVTRACTIANQVDCPLYVVHIMS---KAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSP 314 (592)
Q Consensus 238 eav~~~i~la~~~~~pl~i~hv~s---~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~~~~~~~~~p 314 (592)
| .+ ++...+.|+|+.|..+ ..+.+.|+.+... .+.|.-+.++.++...+-.+|+.-- ...+-.+|
T Consensus 262 E----~~-~aa~~grpih~~H~~Gaggghapd~~~~~~~~----~~~~~st~pt~p~~~~~~~e~~~m~---m~~h~l~~ 329 (572)
T PRK13309 262 E----DT-IDAFEGRTIHTFHTEGAGGGHAPDIIKVASQT----NVLPSSTNPTLPYGVNSQAELFDMI---MVCHNLNP 329 (572)
T ss_pred H----HH-HHHhCCCceeeeeccCcccCCchhHHHhcCCC----CcccCCCCCCCCCcccchHhhhchh---hhhccCCC
Confidence 1 22 5566788999989874 4566777766554 5555555566666665555554421 11122233
Q ss_pred CCCCC---------CCCHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHH--hh-----
Q psy6858 315 PLRPD---------ETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWE--KG----- 378 (592)
Q Consensus 315 plr~~---------~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~--~~----- 378 (592)
.+-.| .++..+...+++.|+.++++||+...... +.+.+ .+++ .+...+ +.
T Consensus 330 ~~~~D~~~a~srig~e~~~a~~~l~daGa~~~~gSD~pv~gr~----~~~p~-------~~iq--~Av~rk~~~g~l~~~ 396 (572)
T PRK13309 330 NVPADVAFAESRVRPETIAAENVLHDMGVISMFSSDSQAMGRV----GENWL-------RAIQ--TADAMKAARGKLPED 396 (572)
T ss_pred CCCCChhHHHHhhCchhhcchhHHHhCCCEEEEcCCCCcccCC----cccHH-------HHHH--HHHHHHhccCCCCcc
Confidence 22221 34445666788999999999998642100 00000 0001 011010 00
Q ss_pred -ccCCCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEEE
Q psy6858 379 -VVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIV 457 (592)
Q Consensus 379 -v~~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv 457 (592)
.....++..++|+..|.|||+++|+++++|+|++||.|||||||++ +|. ..+..||+
T Consensus 397 ~~~~~~~~v~~aL~~yT~n~A~a~g~e~~~GsLe~Gk~ADlvvld~d-----------------~f~-----~~~~~vi~ 454 (572)
T PRK13309 397 AAGNDNFRVLRYVAKITINPAITQGVSHVIGSVEVGKMADLVLWEPR-----------------FFG-----AKPKMVIK 454 (572)
T ss_pred CCCcccccHHHHHHHHhHHHHHHcCcccCccccCCCCcCCEEEEchh-----------------hcC-----CCccEEEE
Confidence 0124467889999999999999999999999999999999999976 221 14689999
Q ss_pred CCEEEEEC-Ceeee
Q psy6858 458 GGRVCVDE-GNLRV 470 (592)
Q Consensus 458 ~GkvV~~~-g~l~~ 470 (592)
+|++||.. |....
T Consensus 455 ~G~iv~~~~gd~~a 468 (572)
T PRK13309 455 GGMINWAAMGDPNA 468 (572)
T ss_pred CCEEEEecCCCccc
Confidence 99999988 76644
No 45
>PRK13206 ureC urease subunit alpha; Reviewed
Probab=100.00 E-value=1.8e-32 Score=294.81 Aligned_cols=362 Identities=19% Similarity=0.191 Sum_probs=243.3
Q ss_pred cccEEEEccEEEcCCCceeeEEEEECCEEEEeecCCCC------------CCCCeEEecCCCEEeeCccccCcCcccccC
Q psy6858 18 QNRLLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIV------------PGGVRVIDAAGSYVIPGGIDPHTHFELELM 85 (592)
Q Consensus 18 ~~~llIkng~Iv~~d~~~~~dV~I~dG~I~~Ig~~~~~------------~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~ 85 (592)
.++++|+|++|+|......+||+|+||+|++|++.... ..+.++||++|++|+|||||+|+|+..|.
T Consensus 70 ~~DlVI~Na~IiD~~gi~~adI~IkDGrIvaIG~~~~p~~~~gv~~~~~ig~~tevIDaeG~iV~PG~ID~HVH~~~Pg- 148 (573)
T PRK13206 70 APDTVITGAVILDHWGIVKADVGIRDGRIVAIGKAGNPDIMDGVHPDLVIGPSTEIIAGNGRILTAGAIDCHVHFICPQ- 148 (573)
T ss_pred CCCEEEECeEEECCCCeEEEEEEEECCEEEEEeCCCCccccccccccccCCCCCEEEECCCCEEEeCEEeeeeccCCch-
Confidence 46899999999997777789999999999999974211 13578999999999999999999986552
Q ss_pred CCCChhhHHHHHHHHHcCCeeEEeccccCC-C---C---ccHHHHHHHHHHHhccCceeeeeccccccCCChHHHHHHHH
Q psy6858 86 GATSVDDFYHGTKAAVAGGTTTIIDFALPR-K---G---ESLIKTYESWRQKADEKVCCDYALHVGITWWSDQVQQEMAE 158 (592)
Q Consensus 86 ~~~~~d~~~~~~~~ala~GtTti~d~~~~~-~---~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (592)
..++|+++||||++++.... . . ......+..+...+. ...++|+++.....+. .+++.+
T Consensus 149 ----------~~~aALagGVTTvi~~G~gP~~~t~~~t~t~g~~~l~~~~~aa~-~~pvn~g~~g~g~~~~---~~~L~e 214 (573)
T PRK13206 149 ----------IVDEALAAGITTLIGGGTGPAEGSKATTVTPGAWHLARMLEALD-GWPVNVALLGKGNTVS---AEALWE 214 (573)
T ss_pred ----------HHHHHHcCCeEEEEcCCCCccccCcccccccchhHHHHHHHHhh-cCceeEEEecCcCcCC---HHHHHH
Confidence 13889999999999963211 0 1 011112223333333 4678899887654443 346777
Q ss_pred HHHHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHH
Q psy6858 159 LCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAE 238 (592)
Q Consensus 159 lv~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~e 238 (592)
+++ .|+.+||++..| ..+++++.++++.|+++++++.+|+++.... |+ + |
T Consensus 215 l~~-aGA~GfKi~~d~----g~t~~~i~~aL~~A~~~gv~V~iHadtlne~----------g~-------------~--E 264 (573)
T PRK13206 215 QLR-GGAGGFKLHEDW----GSTPAAIDACLRVADAAGVQVALHSDTLNEA----------GF-------------V--E 264 (573)
T ss_pred HHH-CCCcEEeecCcc----CCCHHHHHHHHHHHHHhCCEEEEECCCcccc----------ch-------------h--h
Confidence 754 599999988643 4799999999999999999999999874311 11 1 1
Q ss_pred HHHHHHHHhcccCCCEEEEeccc---HHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCcccccccceecCC
Q psy6858 239 AVTRACTIANQVDCPLYVVHIMS---KAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPP 315 (592)
Q Consensus 239 av~~~i~la~~~~~pl~i~hv~s---~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~~~~~~~~~pp 315 (592)
. .++...|.++|+.|+.+ ..+.+.|+.+... .+.|.-+.++.++-..+-.+|+.-- ...+-.+|.
T Consensus 265 ----~-t~aa~~gr~iH~~H~egaggghapd~~~~~~~~----n~lp~stnpt~p~~~nt~~e~~~m~---m~~h~l~~~ 332 (573)
T PRK13206 265 ----D-TLAAIAGRSIHAYHTEGAGGGHAPDIITVASHP----NVLPSSTNPTRPHTVNTLDEHLDML---MVCHHLNPA 332 (573)
T ss_pred ----H-HHHHhcCCeEEEEeccCCCcCcccHHHHhcCCC----CCcCCCCCCCCCCcccchhhhhCeE---EeeccCCCC
Confidence 1 34455689999999985 4567788777655 5655556666666666555555431 111222332
Q ss_pred CCCC---------CCCHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhh-----ccC
Q psy6858 316 LRPD---------ETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKG-----VVP 381 (592)
Q Consensus 316 lr~~---------~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~-----v~~ 381 (592)
+..| +++..+--.+++.|+...++||.+....-.... .. -.+......-++. ...
T Consensus 333 ~~~d~~fa~srir~~ti~ae~~l~d~G~~~~~~SDs~~~~~~~e~~-----~~------~~q~a~~~~~rr~~l~g~~~~ 401 (573)
T PRK13206 333 VPEDLAFAESRIRPSTIAAEDVLHDMGAISMIGSDSQAMGRIGEVV-----LR------TWQTAHVMKRRRGALPGDGRA 401 (573)
T ss_pred CcchhhhhhhhccceeeccCchHhhCCcEEeccCCccccccccchh-----hh------HHHHHHHHHhccCCCCCCCcc
Confidence 2221 334444335778899999999987522100000 00 0000000000000 013
Q ss_pred CCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEEECCEE
Q psy6858 382 GILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRV 461 (592)
Q Consensus 382 ~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv~Gkv 461 (592)
..++..++|++.|.|||+++|++..+|+|++|+.||||+||++. |. -.+..||++|++
T Consensus 402 ~~~~v~~al~~yT~nPA~alG~~~~~GsLe~Gk~ADlVvld~d~-----------------f~-----~~~~~ti~~G~i 459 (573)
T PRK13206 402 DNNRARRYVAKYTICPAVAHGIDHEIGSVEVGKLADLVLWEPAF-----------------FG-----VRPHAVLKGGAI 459 (573)
T ss_pred cchhHHHHHHHHHHHHHHHhCCCcCCcccCCCCcCCEEEECccc-----------------cC-----CCccEEEECCEE
Confidence 45789999999999999999998889999999999999999871 10 145789999999
Q ss_pred EEEC-Ceee
Q psy6858 462 CVDE-GNLR 469 (592)
Q Consensus 462 V~~~-g~l~ 469 (592)
||.. |...
T Consensus 460 v~~~~gd~n 468 (573)
T PRK13206 460 AWAAMGDAN 468 (573)
T ss_pred EEecCCChh
Confidence 9986 5443
No 46
>PRK09045 N-ethylammeline chlorohydrolase; Provisional
Probab=100.00 E-value=7.3e-32 Score=292.78 Aligned_cols=372 Identities=19% Similarity=0.230 Sum_probs=228.0
Q ss_pred cccEEEEccEEEcCCC----ceeeEEEEECCEEEEeecCCCC---CCCCeEEecCCCEEeeCccccCcCcccccCC----
Q psy6858 18 QNRLLIKNGKVVNADK----ISDLDIYIENGVIQQLGRNLIV---PGGVRVIDAAGSYVIPGGIDPHTHFELELMG---- 86 (592)
Q Consensus 18 ~~~llIkng~Iv~~d~----~~~~dV~I~dG~I~~Ig~~~~~---~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~---- 86 (592)
+++++|+|+.|++.+. ..+++|+|+||+|++||+.... +.+.++||++|++|||||||+|+|+.+....
T Consensus 6 ~~~~li~~~~v~~~~~~~~~~~~~~v~i~~g~I~~Vg~~~~~~~~~~~~~~iD~~g~~v~PG~id~H~Hl~~~~~~g~~~ 85 (443)
T PRK09045 6 PVDLLIEARWIVPVEPAGVVLEDHAVAIRDGRIVAILPRAEARARYAAAETVELPDHVLIPGLINAHTHAAMSLLRGLAD 85 (443)
T ss_pred cccEEEEccEEEEeCCCceEeeccEEEEECCEEEEecCcccccccCCcceEEeCCCCEEecCEeccccChhhHhhhhccC
Confidence 4689999999998652 2368999999999999986432 2357899999999999999999998643210
Q ss_pred ------------------CCChhhHHH----HHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeecccc
Q psy6858 87 ------------------ATSVDDFYH----GTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVG 144 (592)
Q Consensus 87 ------------------~~~~d~~~~----~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 144 (592)
..+.++.+. +...++++||||+.|+... . ....+.. .....+....+... .
T Consensus 86 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~G~Ttv~d~~~~--~---~~~~~~~-~~~G~R~~~~~~~~-~ 158 (443)
T PRK09045 86 DLPLMTWLQDHIWPAEGAWVSEEFVRDGTLLAIAEMLRGGTTCFNDMYFF--P---EAAAEAA-HQAGMRAQIGMPVL-D 158 (443)
T ss_pred CCCHHHHHHhhhhhhhhccCCHHHHHHHHHHHHHHHHhcCCcEEEecccc--H---HHHHHHH-HHcCCeEEEecccc-c
Confidence 012233332 3445688999999997421 1 1111111 11111222222211 1
Q ss_pred cc-CC---ChHHHHHHHHHHHH-cCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHH-
Q psy6858 145 IT-WW---SDQVQQEMAELCEK-HGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLA- 218 (592)
Q Consensus 145 ~~-~~---~~~~~~~~~~lv~~-~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~- 218 (592)
.+ .+ .++..++..++.+. .+...++..++++..+.++++++.++++.|+++|+++.+|+.... ......++
T Consensus 159 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~---~~~~~~~~~ 235 (443)
T PRK09045 159 FPTAWASDADEYLAKGLELHDQWRHHPLISTAFAPHAPYTVSDENLERIRTLAEQLDLPIHIHLHETA---QEIADSLKQ 235 (443)
T ss_pred CCCccccCHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEeecCcH---HHHHHHHHH
Confidence 11 11 12223332333332 456678888888888889999999999999999999999985321 11111111
Q ss_pred cCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCEEEEecccHHHHHHHHHHHHHHHhcCCceeee-eecccceeecCC
Q psy6858 219 AGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLY-GETLAAAVGTHA 297 (592)
Q Consensus 219 ~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~-~e~~~~~l~~d~ 297 (592)
.|.. | + + +. .-....+-+..+.|+..-.. +.++.+++. |+ .+. +......+
T Consensus 236 ~g~~---------~--~--~---~l-~~~g~l~~r~~~~H~~~l~~-~~~~~la~~----g~--~i~~~P~~~~~~---- 287 (443)
T PRK09045 236 HGQR---------P--L--A---RL-ARLGLLGPRLIAVHMTQLTD-AEIALLAET----GC--SVVHCPESNLKL---- 287 (443)
T ss_pred hCCC---------H--H--H---HH-HHcCCCCCCeEEEEecCCCH-HHHHHHHHc----CC--eEEECHHHHhhh----
Confidence 2221 1 1 1 11 11123344555667664332 234555555 76 332 21111000
Q ss_pred CCCCCcccccccceecCCCCCCCCCHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHh
Q psy6858 298 NQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEK 377 (592)
Q Consensus 298 ~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~ 377 (592)
......+.++++.|+.+++|||+++.+...+.+ -+.++..++.+
T Consensus 288 ----------------------~~~~~~~~~l~~~Gv~v~lGtD~~~~~~~~~~~--------------~~~~~a~~~~~ 331 (443)
T PRK09045 288 ----------------------ASGFCPVAKLLQAGVNVALGTDGAASNNDLDLF--------------GEMRTAALLAK 331 (443)
T ss_pred ----------------------ccCCCcHHHHHHCCCeEEEecCCCCCCCCccHH--------------HHHHHHHHHHh
Confidence 001112347889999999999987543222211 14555555544
Q ss_pred hcc--CCCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeE---Eeeee
Q psy6858 378 GVV--PGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLV---CHGVP 452 (592)
Q Consensus 378 ~v~--~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~---~~g~~ 452 (592)
... ...+++.++++++|.|||+++|+++++|+|++|+.|||||||.+.....+. .++++.+. ....|
T Consensus 332 ~~~~~~~~~~~~~al~~~T~~~A~~lg~~~~~G~i~~G~~ADlvv~d~~~~~~~p~--------~~~~~~lv~~~~~~~v 403 (443)
T PRK09045 332 AVAGDATALPAHTALRMATLNGARALGLDDEIGSLEPGKQADLVAVDLSGLETQPV--------YDPVSQLVYAAGREQV 403 (443)
T ss_pred hccCCCCcCCHHHHHHHHhHHHHHHcCCCCCCcccCCCCcCCEEEEeCCCCCcCCc--------cChHhHhhEeCCCCCc
Confidence 332 346899999999999999999998889999999999999999884322111 23333222 23478
Q ss_pred eEEEECCEEEEECCeeeec
Q psy6858 453 EYVIVGGRVCVDEGNLRVA 471 (592)
Q Consensus 453 ~~Viv~GkvV~~~g~l~~~ 471 (592)
..||++||+||++|++...
T Consensus 404 ~~v~v~G~~v~~~g~~~~~ 422 (443)
T PRK09045 404 SHVWVAGKQLLDDRELTTL 422 (443)
T ss_pred cEEEECCEEEEECCcCCCC
Confidence 9999999999999988653
No 47
>PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed
Probab=100.00 E-value=8.3e-32 Score=293.12 Aligned_cols=373 Identities=18% Similarity=0.207 Sum_probs=230.9
Q ss_pred EEEEccEEEcCCC----ceeeEEEEECCEEEEeecCCCCC-CCCeEEecCCCEEeeCccccCcCcccccCC---------
Q psy6858 21 LLIKNGKVVNADK----ISDLDIYIENGVIQQLGRNLIVP-GGVRVIDAAGSYVIPGGIDPHTHFELELMG--------- 86 (592)
Q Consensus 21 llIkng~Iv~~d~----~~~~dV~I~dG~I~~Ig~~~~~~-~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~--------- 86 (592)
+++.|+.|++.+. ..+++|+|+||+|++|++..+.+ .+.++||++|++|||||||+|+|+.+....
T Consensus 4 ~i~~~~~v~~~~~~~~~~~~~~v~I~~g~I~~Vg~~~~~~~~~~~vID~~g~~v~PGlVn~H~H~~~~~~~g~~~~~~~~ 83 (451)
T PRK08203 4 WIKNPLAIVTMDAARREIADGGLVVEGGRIVEVGPGGALPQPADEVFDARGHVVTPGLVNTHHHFYQTLTRALPAAQDAE 83 (451)
T ss_pred EEEeccEEEEeCCCceEeeccEEEEECCEEEEEeCCccCCCCCCeEEeCCCCEEecceEeccccccchhcccccccCCCc
Confidence 4455578998764 23689999999999999975533 367899999999999999999999653221
Q ss_pred -------------CCChhhHHH----HHHHHHcCCeeEEeccccCCCC---ccHHHHHHHHHHHhccCceeeeec-----
Q psy6858 87 -------------ATSVDDFYH----GTKAAVAGGTTTIIDFALPRKG---ESLIKTYESWRQKADEKVCCDYAL----- 141 (592)
Q Consensus 87 -------------~~~~d~~~~----~~~~ala~GtTti~d~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~----- 141 (592)
..++++++. +...++++||||++|+....+. ..+..+.+....... +....+..
T Consensus 84 ~~~~~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~~~~~a~~~~G~-R~~~~~~~~~~~~ 162 (451)
T PRK08203 84 LFPWLTTLYPVWARLTPEMVRVATQTALAELLLSGCTTSSDHHYLFPNGLRDALDDQIEAAREIGM-RFHATRGSMSLGE 162 (451)
T ss_pred HHHHHHHHhHHHHhCCHHHHHHHHHHHHHHHHhcCcCEEEcceeeccccccchHHHHHHHHHHcCC-eEEEecceeecCC
Confidence 122344433 3345678999999998632211 112222322222222 22221111
Q ss_pred -ccccc-----CCChHHHHHHHHHHHHc-C---CcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCch-hhhH
Q psy6858 142 -HVGIT-----WWSDQVQQEMAELCEKH-G---VNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENG-EIID 210 (592)
Q Consensus 142 -~~~~~-----~~~~~~~~~~~~lv~~~-G---v~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~-~~i~ 210 (592)
+.... ...++..+..+++++.. + ...++..++.+..+.+++++|.++++.|+++|+++.+|+... ..+.
T Consensus 163 ~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~ 242 (451)
T PRK08203 163 SDGGLPPDSVVEDEDAILADSQRLIDRYHDPGPGAMLRIALAPCSPFSVSRELMRESAALARRLGVRLHTHLAETLDEEA 242 (451)
T ss_pred ccCCCCccccccCHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHH
Confidence 00001 11223445555555432 1 145777778888888999999999999999999999997432 2111
Q ss_pred HHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCEEEEecccHHHHHHHHHHHHHHHhcCCceeee-eecc
Q psy6858 211 KNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLY-GETL 289 (592)
Q Consensus 211 ~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~-~e~~ 289 (592)
.. +...|.. | +.+.. -....+.++.+.|+..-.. +.++.+++. |+ .+. +...
T Consensus 243 ~~---~~~~g~~---------~-------~~~l~-~~g~l~~~~~~~H~~~l~~-~~~~~la~~----g~--~v~~~P~~ 295 (451)
T PRK08203 243 FC---LERFGMR---------P-------VDYLE-DLGWLGPDVWLAHCVHLDD-AEIARLART----GT--GVAHCPCS 295 (451)
T ss_pred HH---HHHhCCC---------H-------HHHHH-HcCCCCCCeEEEEEeCCCH-HHHHHHHhc----CC--eEEECcHH
Confidence 11 1112221 1 11111 1122344565666664332 234555555 77 432 2211
Q ss_pred cceeecCCCCCCCcccccccceecCCCCCCCCCHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhh
Q psy6858 290 AAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQD 369 (592)
Q Consensus 290 ~~~l~~d~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~ 369 (592)
...+ . ...+| +..+++.|+.+++|||.+..+.....+ -+.
T Consensus 296 ~~~l-------------~---~~~~~----------~~~~~~~Gv~v~lGtD~~~~~~~~~~~--------------~~~ 335 (451)
T PRK08203 296 NMRL-------------A---SGIAP----------VRELRAAGVPVGLGVDGSASNDGSNLI--------------GEA 335 (451)
T ss_pred hhhh-------------c---cCCCC----------HHHHHHCCCeEEEecCCCccCCCcCHH--------------HHH
Confidence 1100 0 01122 347899999999999986533111111 144
Q ss_pred HHHHHHHhhcc-CCCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEE
Q psy6858 370 RLSVIWEKGVV-PGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVC 448 (592)
Q Consensus 370 ~~~~~~~~~v~-~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~ 448 (592)
++...+.+... ...+++.++++++|.|||+++|+. ++|+|++|+.|||||||.+.... ...++||+++.+
T Consensus 336 ~~~~~~~~~~~~~~~i~~~~~l~~~T~~~A~~lg~~-~~G~l~~G~~ADlvv~d~~~~~~--------~~~~~p~~~l~~ 406 (451)
T PRK08203 336 RQALLLQRLRYGPDAMTAREALEWATLGGARVLGRD-DIGSLAPGKLADLALFDLDELRF--------AGAHDPVAALVL 406 (451)
T ss_pred HHHHHHhhcccCCCCCCHHHHHHHHHHHHHHHhCCC-CCCCcCCCCccCEEEEcCCcccc--------CCccChHHHHHc
Confidence 55555544322 346899999999999999999996 78999999999999999985422 223678877765
Q ss_pred e--eeeeEEEECCEEEEECCeeee
Q psy6858 449 H--GVPEYVIVGGRVCVDEGNLRV 470 (592)
Q Consensus 449 ~--g~~~~Viv~GkvV~~~g~l~~ 470 (592)
. +.|..||++|++||++|+++.
T Consensus 407 ~~~~~v~~v~v~G~~v~~~~~~~~ 430 (451)
T PRK08203 407 CGPPRADRVMVGGRWVVRDGQLTT 430 (451)
T ss_pred cCCCCccEEEECCEEEEECCcccC
Confidence 3 589999999999999998764
No 48
>PRK13985 ureB urease subunit beta; Provisional
Probab=100.00 E-value=8.9e-33 Score=294.50 Aligned_cols=350 Identities=20% Similarity=0.245 Sum_probs=235.8
Q ss_pred cccEEEEccEEEcCCCceeeEEEEECCEEEEeecCCCC------------CCCCeEEecCCCEEeeCccccCcCcccccC
Q psy6858 18 QNRLLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIV------------PGGVRVIDAAGSYVIPGGIDPHTHFELELM 85 (592)
Q Consensus 18 ~~~llIkng~Iv~~d~~~~~dV~I~dG~I~~Ig~~~~~------------~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~ 85 (592)
..+++|+|++|+|......+||+|+||+|++|++.... ..+.++||++|++|+|||||+|+|+..|.
T Consensus 64 ~~DlVI~Na~IiD~~gi~kaDI~IkdGrIaaIG~~gn~~~~~~v~~~~~ig~~tevIDa~G~iV~PG~ID~HvH~~~P~- 142 (568)
T PRK13985 64 ELDLIITNALIIDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLIVTAGGIDTHIHFISPQ- 142 (568)
T ss_pred cCCEEEECeEEECCCCcEEEEEEEECCEEEEeecCCCccccccccccccCCCCceEEECCCCEEEeCEEEeeCCCCCcc-
Confidence 56899999999997777789999999999999985321 23679999999999999999999996542
Q ss_pred CCCChhhHHHHHHHHHcCCeeEEeccccCC-----C--CccHHHHHHHHHHHhccCceeeeeccccccCCChHHHHHHHH
Q psy6858 86 GATSVDDFYHGTKAAVAGGTTTIIDFALPR-----K--GESLIKTYESWRQKADEKVCCDYALHVGITWWSDQVQQEMAE 158 (592)
Q Consensus 86 ~~~~~d~~~~~~~~ala~GtTti~d~~~~~-----~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (592)
. .+.|+++||||++++.... + .......++...+.+.. ..++++++... +. ...+++++
T Consensus 143 ------~----~~~AlagGVTTvI~~G~gP~~~T~p~~~tpg~~~i~~ml~~a~~-~pvn~gf~gkG--~~-~~l~eL~e 208 (568)
T PRK13985 143 ------Q----IPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAEE-YSMNLGFLGKG--NS-SNDASLAD 208 (568)
T ss_pred ------H----HHHHhcCceEEEEccCcCCCCCCCCcCCCCcHHHHHHHHHHhhc-cCccEEEecCC--cc-CCHHHHHH
Confidence 1 2458999999999852211 0 01112223333333332 34778877543 22 33567777
Q ss_pred HHHHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHH
Q psy6858 159 LCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAE 238 (592)
Q Consensus 159 lv~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~e 238 (592)
+++ .|+.+||.+..| ..++..+.++++.|++++.++.+|+++.... -.+ |
T Consensus 209 l~~-aGA~GfK~~ed~----g~t~~~I~~aL~vA~~~dv~V~iHtdtlne~-----------------------g~~--E 258 (568)
T PRK13985 209 QIE-AGAIGFKIHEDW----GTTPSAINHALDVADKYDVQVAIHTDTLNEA-----------------------GCV--E 258 (568)
T ss_pred HHH-cCCEEEEECCcc----CCCHHHHHHHHHHHHHcCCEEEEeCCCCCCc-----------------------hhh--H
Confidence 764 599999976443 4788999999999999999999999874311 001 1
Q ss_pred HHHHHHHHhcccCCCEEEEeccc---HHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCcccccccceecCC
Q psy6858 239 AVTRACTIANQVDCPLYVVHIMS---KAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPP 315 (592)
Q Consensus 239 av~~~i~la~~~~~pl~i~hv~s---~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~~~~~~~~~pp 315 (592)
. .++...|.++|+.|+.+ ..+.+.|+.+... .+.|.-+.++.++...+-.+|+.-- ...+-.+|.
T Consensus 259 ~-----t~aa~~gr~iH~~H~egaggghapdi~~~~~~~----nvlp~stnpt~p~t~nt~~e~~dm~---m~~h~l~~~ 326 (568)
T PRK13985 259 D-----TMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEH----NILPASTNPTIPFTVNTEAEHMDML---MVCHHLDKS 326 (568)
T ss_pred H-----HHHHhcCCeEEEEeccCCCccchhhHHHHcCCC----CcccCCCCCCCCCccCchhhhcCeE---EeecCCCCC
Confidence 1 34445689999999985 4667777777555 5555555666666666655555431 112223332
Q ss_pred CCCC---------CCCHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHH---hhc----
Q psy6858 316 LRPD---------ETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWE---KGV---- 379 (592)
Q Consensus 316 lr~~---------~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~---~~v---- 379 (592)
+..| +++..+---+-+.|....++||...... +.+....+|+ +..
T Consensus 327 ~~ed~afa~srir~~tiaaed~l~d~G~~s~~~SDs~~mgr-------------------~ge~~~r~~q~a~k~~~~~g 387 (568)
T PRK13985 327 IKEDVQFADSRIRPQTIAAEDTLHDMGIFSITSSDSQAMGR-------------------VGEVITRTWQTADKNKKEFG 387 (568)
T ss_pred CcchhhhhhhhccccccccCchhhhCCcEEEEeccchhhCc-------------------ccceeeehHHHHHHHHHhcC
Confidence 2221 2333222224457999999999853210 1111111222 111
Q ss_pred -------cCCCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEeeee
Q psy6858 380 -------VPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVP 452 (592)
Q Consensus 380 -------~~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~ 452 (592)
....++..++|++.|.|||+++|++.++|+|++||.|||||||++. |. ..|
T Consensus 388 ~l~~~~~~~dnl~v~eAL~~yTin~A~A~G~e~~vGSLe~GK~ADlVv~d~d~-----------------f~-----~~p 445 (568)
T PRK13985 388 RLKEEKGDNDNFRIKRYLSKYTINPAIAHGISEYVGSVEVGKVADLVLWSPAF-----------------FG-----VKP 445 (568)
T ss_pred CCCCccccccccCHHHHHHHHhHHHHHHcCcccCceeECCCCccCEEEEcCcc-----------------CC-----CCh
Confidence 1245667799999999999999999999999999999999999872 21 146
Q ss_pred eEEEECCEEEEEC
Q psy6858 453 EYVIVGGRVCVDE 465 (592)
Q Consensus 453 ~~Viv~GkvV~~~ 465 (592)
..||++|+++|..
T Consensus 446 e~vi~~G~iv~~~ 458 (568)
T PRK13985 446 NMIIKGGFIALSQ 458 (568)
T ss_pred heEEECCEEEEcc
Confidence 7999999999976
No 49
>PRK13308 ureC urease subunit alpha; Reviewed
Probab=100.00 E-value=2.1e-32 Score=292.85 Aligned_cols=350 Identities=22% Similarity=0.247 Sum_probs=237.5
Q ss_pred cccEEEEccEEEcC-CCceeeEEEEECCEEEEeecCCCC------------CCCCeEEecCCCEEeeCccccCcCccccc
Q psy6858 18 QNRLLIKNGKVVNA-DKISDLDIYIENGVIQQLGRNLIV------------PGGVRVIDAAGSYVIPGGIDPHTHFELEL 84 (592)
Q Consensus 18 ~~~llIkng~Iv~~-d~~~~~dV~I~dG~I~~Ig~~~~~------------~~~~~vIDa~G~~V~PG~ID~HtH~~~~~ 84 (592)
..+++|+|++|+|+ .....+||+|+||+|++|++.... ..+.++||++|++|+|||||+|+|+..+.
T Consensus 67 ~~DlVItNa~IIDp~~Gi~kaDIgIkDGrIaaIG~~~npd~~~gv~p~~~~g~~teVIDaeG~IVtPG~ID~HVH~~~Pg 146 (569)
T PRK13308 67 ALDFVLCNVTVIDPVLGIVKGDIGIRDGRIVGIGKAGNPDIMDGVDPRLVVGPGTDVRPAEGLIATPGAIDVHVHFDSAQ 146 (569)
T ss_pred cCCEEEECeEEEcCCCCeEEeEEEEECCEEEEecCCCCccccccccccccCCCCCeEEECCCCEEEeCEEEeeeCCCCcc
Confidence 46899999999985 456789999999999999975321 13668999999999999999999996542
Q ss_pred CCCCChhhHHHHHHHHHcCCeeEEeccccCC---CCccHHHHHHHHHHHhccCceeeeeccccccCCChHHHHHHHHHHH
Q psy6858 85 MGATSVDDFYHGTKAAVAGGTTTIIDFALPR---KGESLIKTYESWRQKADEKVCCDYALHVGITWWSDQVQQEMAELCE 161 (592)
Q Consensus 85 ~~~~~~d~~~~~~~~ala~GtTti~d~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~ 161 (592)
. .++|+++||||++++.... ........++.+.+.+. ...++|+++.... . ...+++.++++
T Consensus 147 ~-----------~~aALagGVTTVi~gg~gPt~p~~t~g~~~i~~~l~aa~-~~pvN~g~~gkG~--~-s~~aeL~eli~ 211 (569)
T PRK13308 147 L-----------VDHALASGITTMLGGGLGPTVGIDSGGPFNTGRMLQAAE-AWPVNFGFLGRGN--S-SKPAALIEQVE 211 (569)
T ss_pred H-----------HHHHHcCCCcEEecCCcCCCCCCCCCCHHHHHHHHHHHh-cCCccEEEEcCCc--c-cCHHHHHHHHH
Confidence 1 3789999999999863221 01122333444444433 2458888875432 2 33567888765
Q ss_pred HcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHH
Q psy6858 162 KHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVT 241 (592)
Q Consensus 162 ~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~ 241 (592)
.|+.+||.+..| ..++..+.++++.|+++++++.+|++..... | .+ |.
T Consensus 212 -aGA~GfKi~ed~----g~t~~~i~~aL~~A~~~dv~VaiHadtlne~----------g-------------~~--E~-- 259 (569)
T PRK13308 212 -AGACGLKIHEDW----GAMPAAIDTCLEVADEYDFQVQLHTDTLNES----------G-------------FV--ED-- 259 (569)
T ss_pred -CCCCEEeecCCC----CCCHHHHHHHHHHHHhcCCEEEEeCCCcCcc----------h-------------HH--HH--
Confidence 599999988654 3588999999999999999999999873311 0 01 22
Q ss_pred HHHHHhcccCCCEEEEecccH---HHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCcccccccceecCCCCC
Q psy6858 242 RACTIANQVDCPLYVVHIMSK---AAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRP 318 (592)
Q Consensus 242 ~~i~la~~~~~pl~i~hv~s~---~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr~ 318 (592)
.++...|.++|+.|+.+. .+.+.|+.+... .+.|.-+.++.++-..+-.+|+.-- ...+-.+|.+..
T Consensus 260 ---t~~a~~gr~iH~~H~egaggghapd~l~~~~~~----n~lp~stnpt~p~t~nt~~e~~dm~---m~~h~l~~~~~~ 329 (569)
T PRK13308 260 ---TLAAIGGRTIHMYHTEGAGGGHAPDIIRVVGEP----HCLPSSTNPTNPYTVNTFDEHLDMT---MVCHHLNPDVPE 329 (569)
T ss_pred ---HHHHhcCCeEEEEeccCCccCchhHHHHHhCCC----CccCCCCCCCCCCccCchhhhcCeE---EEecCCCCCCcc
Confidence 233334899999999863 556666666554 5555555666666666555555431 111223332222
Q ss_pred C---------CCCHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhh---c-cCCCCC
Q psy6858 319 D---------ETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKG---V-VPGILS 385 (592)
Q Consensus 319 ~---------~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~---v-~~~~l~ 385 (592)
| +++..+---+-+.|+...++||.... ..+.+.+...|+.. . ..|.|+
T Consensus 330 d~afa~srir~~ti~ae~~l~d~g~~s~~~sds~~m-------------------gr~~e~i~r~~q~a~~~~~~~g~l~ 390 (569)
T PRK13308 330 DVAFAESRIRAQTIAAEDVLHDIGAISMLGSDSQGM-------------------GRIAEVIARTWQLASKMKDQRGPLP 390 (569)
T ss_pred hhhhhhhhccceeeccCchhhcCCcEEEEecchHHH-------------------hHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 1 22222221244569999999997432 23344455555422 1 356676
Q ss_pred HHH-----------HHHHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeE
Q psy6858 386 PEK-----------FVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEY 454 (592)
Q Consensus 386 ~~e-----------~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~ 454 (592)
..+ .|+++|.|||+++|++.++|+|++|+.||||+||++. | +. .+..
T Consensus 391 ~~~~~~~dn~rv~r~L~~~T~npA~alGi~~~vGsLe~Gk~ADLVv~d~d~-----------------f-gv----~p~~ 448 (569)
T PRK13308 391 EDRGTFADNARIKRYIAKYTINPAITFGIDDHIGSLEPGKLADIVLWRPAF-----------------F-GI----KPEL 448 (569)
T ss_pred cccccCCchhhhhHHHHHHhHHHHHHcCCCCCceeeCCCCcCCEEEECCcc-----------------c-CC----CeeE
Confidence 665 7999999999999998889999999999999999761 1 11 4678
Q ss_pred EEECCEEEEEC
Q psy6858 455 VIVGGRVCVDE 465 (592)
Q Consensus 455 Viv~GkvV~~~ 465 (592)
||++|+++|..
T Consensus 449 ti~~G~iv~~~ 459 (569)
T PRK13308 449 VIKGGFPAWAA 459 (569)
T ss_pred EEECCEEEEec
Confidence 99999999864
No 50
>PRK13207 ureC urease subunit alpha; Reviewed
Probab=100.00 E-value=5.4e-32 Score=291.84 Aligned_cols=363 Identities=20% Similarity=0.219 Sum_probs=240.0
Q ss_pred cccEEEEccEEEcCCCceeeEEEEECCEEEEeecCCC----------CCCCCeEEecCCCEEeeCccccCcCcccccCCC
Q psy6858 18 QNRLLIKNGKVVNADKISDLDIYIENGVIQQLGRNLI----------VPGGVRVIDAAGSYVIPGGIDPHTHFELELMGA 87 (592)
Q Consensus 18 ~~~llIkng~Iv~~d~~~~~dV~I~dG~I~~Ig~~~~----------~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~~ 87 (592)
.++++|+|++|+|......++|+|+||+|++|++... +..+.++||++|++|+|||||+|+|+..+..
T Consensus 66 ~mDlVI~Na~Vvd~~gi~~adI~I~dGrI~~IG~~~~p~~~~~v~~~~~~~~eVIDa~G~iV~PG~ID~HvH~~~P~~-- 143 (568)
T PRK13207 66 AVDTVITNALILDHWGIVKADIGIKDGRIVAIGKAGNPDIQDGVDIIIGPGTEVIAGEGLIVTAGGIDTHIHFICPQQ-- 143 (568)
T ss_pred cCCEEEECeEEECCCCeEEEEEEEECCEEEEEeCCCCccccccccccCCCCCeEEECCCCEEEeCeEECccCCccccH--
Confidence 5789999999999877778999999999999997421 1136789999999999999999999865521
Q ss_pred CChhhHHHHHHHHHcCCeeEEeccccCC-C--Ccc----HHHHHHHHHHHhccCceeeeeccccccCCChHHHHHHHHHH
Q psy6858 88 TSVDDFYHGTKAAVAGGTTTIIDFALPR-K--GES----LIKTYESWRQKADEKVCCDYALHVGITWWSDQVQQEMAELC 160 (592)
Q Consensus 88 ~~~d~~~~~~~~ala~GtTti~d~~~~~-~--~~~----~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv 160 (592)
.++|+++||||++++.... . ... ....+........ ...++++++.... .+..+++++++
T Consensus 144 ---------~~aALagGVTTVi~mg~gP~~gt~~~t~tpG~~~l~~~l~~a~-~~pin~g~~g~g~---~~~~~~L~e~i 210 (568)
T PRK13207 144 ---------IEEALASGVTTMIGGGTGPATGTNATTCTPGPWHIHRMLQAAD-AFPMNIGFLGKGN---ASLPEALEEQI 210 (568)
T ss_pred ---------HHHHHcCCCCEEEcCCcCCccCCcccccccchHHHHHHHHHhh-cCCceEEEEcCCC---cccHHHHHHHH
Confidence 5789999999999974221 1 000 1122333323222 2456777765332 23466777776
Q ss_pred HHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHH
Q psy6858 161 EKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAV 240 (592)
Q Consensus 161 ~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav 240 (592)
+ .|+.+||++..+ ..+++++.++++.|+++|.++.+|++..... ..
T Consensus 211 ~-aGA~gfKi~~d~----g~t~~~l~~aL~~A~~~gv~V~iHa~tlne~-----------------------------G~ 256 (568)
T PRK13207 211 E-AGAIGLKLHEDW----GATPAAIDNCLSVADEYDVQVAIHTDTLNES-----------------------------GF 256 (568)
T ss_pred H-cCCCEEeecCCC----CCCHHHHHHHHHHHHHhCCEEEEeCCCcccc-----------------------------hH
Confidence 4 599999988654 3588999999999999999999999763211 00
Q ss_pred HHHHHHhcccCCCEEEEeccc---HHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCcccccccceecCCCC
Q psy6858 241 TRACTIANQVDCPLYVVHIMS---KAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLR 317 (592)
Q Consensus 241 ~~~i~la~~~~~pl~i~hv~s---~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr 317 (592)
.+. .++...+..+|+.|..+ ..+.+.++.+... +++|.-+.++.++-..+-.+|+.-- ...+-.+|.+.
T Consensus 257 ~e~-t~~a~~g~~iH~~H~egaggghapdii~~~~~~----~v~p~st~pt~p~~~~~~~e~~~m~---m~~h~l~~~~~ 328 (568)
T PRK13207 257 VED-TIAAFKGRTIHTFHTEGAGGGHAPDIIKVAGEP----NVLPSSTNPTRPYTVNTIDEHLDML---MVCHHLDPSIP 328 (568)
T ss_pred HHH-HHHhcCCCEEEEEeecCCCcCCchHHHHHhhcC----CCccCCCCCCCCCccCchhhhcCeE---EeecCCCCCCc
Confidence 011 34555688999999773 3567788887777 8877777777777776666665432 11122233222
Q ss_pred CC---------CCCHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhcc--C-CCCC
Q psy6858 318 PD---------ETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVV--P-GILS 385 (592)
Q Consensus 318 ~~---------~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~--~-~~l~ 385 (592)
.| +++..+---+++.|...+++||+..... .|...+. +.+......-..+.. . +..+
T Consensus 329 ~d~~~a~srir~~t~~ae~~l~d~Ga~~~~~SD~p~~~~----~~~~~~r-------~~q~A~~r~~~~G~~~~d~~~~~ 397 (568)
T PRK13207 329 EDVAFAESRIRRETIAAEDILHDLGAISMISSDSQAMGR----VGEVIIR-------TWQTAHKMKVQRGPLPGDSGRND 397 (568)
T ss_pred chhhhhhhhccceeecccchhhhCCCEEEecCCcccccc----cccchhH-------HHHHHHHHHHccCCCCcccccCc
Confidence 21 3333333346788999999999964420 0000000 001100000000000 0 1112
Q ss_pred HHHH---HHHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEEECCEEE
Q psy6858 386 PEKF---VAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVC 462 (592)
Q Consensus 386 ~~e~---v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv~GkvV 462 (592)
.+++ |+++|.|||+++|++..+|+|++|+.|||||||++. | ...+..||++|+++
T Consensus 398 n~ri~~~l~~~T~npA~alG~~~~vGsIe~Gk~ADlVvld~d~-----------------f-----~~~~~~ti~~G~iv 455 (568)
T PRK13207 398 NFRVKRYIAKYTINPAIAHGISHEVGSVEVGKLADLVLWKPAF-----------------F-----GVKPELVLKGGMIA 455 (568)
T ss_pred cchHHHHHHHHhHHHHHHcCCCcCccccCCCCcCCEEEECchh-----------------c-----CCCceEEEECCEEE
Confidence 2233 999999999999998889999999999999999761 1 11467999999999
Q ss_pred EEC-Ceeee
Q psy6858 463 VDE-GNLRV 470 (592)
Q Consensus 463 ~~~-g~l~~ 470 (592)
|.. |....
T Consensus 456 ~~~~gd~~a 464 (568)
T PRK13207 456 WAPMGDPNA 464 (568)
T ss_pred EecCCCccc
Confidence 988 76644
No 51
>PRK05451 dihydroorotase; Provisional
Probab=100.00 E-value=1.3e-32 Score=288.04 Aligned_cols=325 Identities=16% Similarity=0.100 Sum_probs=243.5
Q ss_pred EEeeCccccCcCcccccCCCCChhhHHHHHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccC--ceeeeeccccc
Q psy6858 68 YVIPGGIDPHTHFELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEK--VCCDYALHVGI 145 (592)
Q Consensus 68 ~V~PG~ID~HtH~~~~~~~~~~~d~~~~~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~ 145 (592)
+-+|=-||+|+|+... ...+++.++++ .++|++++|....+.....+.++.+...+... ..++|.++..+
T Consensus 5 ~~~~~~~d~h~hl~~~----~~~~~~~~~~~----~~~t~~v~mPnt~P~~~~~~~l~~~~~~a~~~~~~~~d~~~~~~i 76 (345)
T PRK05451 5 LTIRRPDDWHLHLRDG----AMLKAVVPYTA----RQFGRAIVMPNLVPPVTTVAQALAYRERILAALPAGSNFEPLMTL 76 (345)
T ss_pred EEecCcceEEEecCCc----hHHHHHHHHHH----HhcCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCCcEEEEEEE
Confidence 5577889999999742 33447777776 34888888875544444566677776666544 23567766666
Q ss_pred cCCChHHHHHHHHHHHHcC-CcEEEEEEeeCCC----cCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcC
Q psy6858 146 TWWSDQVQQEMAELCEKHG-VNSFKTFMAYKGL----YMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAG 220 (592)
Q Consensus 146 ~~~~~~~~~~~~~lv~~~G-v~~~k~~~~~~~~----~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G 220 (592)
........++++++. +.| +.+||+|+.+... ...+++.++++++.+.++|+++.+|+|+.+......
T Consensus 77 ~~~~~~~~~El~~~~-~~Gvv~g~Kl~~~~~~~~~~~~~~dd~~l~~~~e~~~~~g~~V~vHaE~~~~~~~~~------- 148 (345)
T PRK05451 77 YLTDNTDPDELERAK-ASGVVTAAKLYPAGATTNSDAGVTDIEKIYPVLEAMQKLGMPLLVHGEVTDPDIDIF------- 148 (345)
T ss_pred EeCCCCCHHHHHHHH-HCCCEEEEEEecccCccCCccCcCCHHHHHHHHHHHHHcCCEEEEecCCCCcccccc-------
Confidence 444334467888885 459 5699999875321 112788999999999999999999999854311000
Q ss_pred CCCCCCccCCCcHHHHHHHHHHH-HHHhccc-CCCEEEEecccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCC
Q psy6858 221 IKGPEGHQLSRPEEVEAEAVTRA-CTIANQV-DCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHAN 298 (592)
Q Consensus 221 ~~~p~~~~~s~p~~~e~eav~~~-i~la~~~-~~pl~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~ 298 (592)
.. |..++.+. ..+|... ++++|++|+++.++.+.|+++ +. .|++|+|++||.++..
T Consensus 149 ---------~~----e~~~~~~~l~~lA~~~pg~~lhI~Hlst~~~~e~i~~a-------~~--~it~Et~ph~L~l~~~ 206 (345)
T PRK05451 149 ---------DR----EAVFIDRVLEPLRRRFPKLKIVFEHITTKDAVDYVREA-------ND--NLAATITPHHLLINRN 206 (345)
T ss_pred ---------cc----hHHHHHHHHHHHHHhcCCCcEEEEecCcHHHHHHHHhc-------CC--CEEEEecHHHHhcCHH
Confidence 00 23344454 4488666 999999999999999998665 56 8999999999999987
Q ss_pred CCCCcccccccceecCCCCCCCCCHHHHHHHHhcCCce-EEeCCCCCCChhhhhcCCCCCCcCCCCCcchhh---HHHHH
Q psy6858 299 QIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQ-TTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQD---RLSVI 374 (592)
Q Consensus 299 ~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~-~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~---~~~~~ 374 (592)
++... ..+..++++||||. .+++++||+.|++|.+. +++|||||++..+|. .|+|.+|++. .++.+
T Consensus 207 ~~~~~-~~~~~~k~~PPLR~-~~d~~aLw~~l~~G~Id~~i~SDHaP~~~~~K~--------~~~G~~gi~~~~~g~~~~ 276 (345)
T PRK05451 207 DMLVG-GIRPHLYCLPILKR-ETHRQALREAATSGNPKFFLGTDSAPHARHAKE--------SACGCAGIFSAPAALELY 276 (345)
T ss_pred HHhCC-CcCCCeEEeCCCCC-HHHHHHHHHHHHcCCCCEEEeCCCCCCChHHhC--------CCCCCCchhhHHHHHHHH
Confidence 76421 12345889999998 78999999999999999 799999999987763 2567777776 44555
Q ss_pred HHhhccCCCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcc-cCeEEeeee
Q psy6858 375 WEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIF-EGLVCHGVP 452 (592)
Q Consensus 375 ~~~~v~~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~-~g~~~~g~~ 452 (592)
+..+ ..++ +++++++++|+||||+||++++||+|.+| +..++++...+++...|+|| +|.++.+.|
T Consensus 277 ~~~~-~~~~-~l~~~v~~~s~nPAkifGl~~~KG~i~~~----------~~~~~v~~~~~~s~~~~sp~~~~~~~~~~~ 343 (345)
T PRK05451 277 AEVF-EEAG-ALDKLEAFASLNGPDFYGLPRNTDTITLV----------REPWTVPESIPFGDETVVPFRAGETLRWSV 343 (345)
T ss_pred HHHH-HcCC-CHHHHHHHHhHHHHHHhCCCCCCCeEEEE----------ecceecCcccccCCCceeeecCCceeeeEe
Confidence 5533 3333 99999999999999999999999999888 57899999999999999999 666666655
No 52
>PRK07203 putative chlorohydrolase/aminohydrolase; Validated
Probab=100.00 E-value=4.6e-31 Score=286.46 Aligned_cols=373 Identities=20% Similarity=0.236 Sum_probs=226.6
Q ss_pred EEEEccEEEcCCC---c-eeeEEEEECCEEEEeecC--CCC-CCCCeEEecCCCEEeeCccccCcCcccccC--------
Q psy6858 21 LLIKNGKVVNADK---I-SDLDIYIENGVIQQLGRN--LIV-PGGVRVIDAAGSYVIPGGIDPHTHFELELM-------- 85 (592)
Q Consensus 21 llIkng~Iv~~d~---~-~~~dV~I~dG~I~~Ig~~--~~~-~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~-------- 85 (592)
++|+|++|++.+. . .+++|+|+||+|++||+. ... ..+.++||++|++|+|||||+|+|+.+...
T Consensus 2 ~li~~~~i~~~~~~~~~~~~~~v~I~~g~I~~Vg~~~~~~~~~~~~~viD~~g~lv~PGfID~H~H~~~~~~rg~~~~~~ 81 (442)
T PRK07203 2 LLIGNGTAITRDPAKPVIEDGAIAIEGNVIVEIGTTDELKAKYPDAEFIDAKGKLIMPGLINSHNHIYSGLARGMMANIP 81 (442)
T ss_pred EEEECCEEEeCCCCCceeeccEEEEECCEEEEEeCchhhccccCCCeEEeCCCCEEecceeeccccchhhhhcccccccC
Confidence 5899999997542 2 368999999999999963 221 135689999999999999999999854221
Q ss_pred -----------------CCCChhhHHHHHH----HHHcCCeeEEeccccCCC-CccHHHHHHHHHHHhccCceeeeeccc
Q psy6858 86 -----------------GATSVDDFYHGTK----AAVAGGTTTIIDFALPRK-GESLIKTYESWRQKADEKVCCDYALHV 143 (592)
Q Consensus 86 -----------------~~~~~d~~~~~~~----~ala~GtTti~d~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~ 143 (592)
..+++++++.+++ .++++||||++|+..... .....+++.+.......+....+.+.-
T Consensus 82 ~~~~l~~~l~~~~~~~~~~~t~e~~~~~a~~~~~e~l~~GtTt~~d~~~~~~~~~~~~~~~~~a~~~~GiR~~~~~~~~d 161 (442)
T PRK07203 82 PPPDFISILKNLWWRLDRALTLEDVYYSALICSLEAIKNGVTTVFDHHASPNYIGGSLFTIADAAKKVGLRAMLCYETSD 161 (442)
T ss_pred CCCCHHHHHHhheehhhhcCCHHHHHHHHHHHHHHHHHcCceEEEccccccccccchHHHHHHHHHHhCCeEEEeccccc
Confidence 1133455554443 457899999999853211 112223332222222222322222211
Q ss_pred -cccCCChHHHHHHHHHHHHc-C--CcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchh-hhHHHHHHHHH
Q psy6858 144 -GITWWSDQVQQEMAELCEKH-G--VNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGE-IIDKNTQKLLA 218 (592)
Q Consensus 144 -~~~~~~~~~~~~~~~lv~~~-G--v~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~-~i~~~~~~~~~ 218 (592)
.......+..++..++++.. + ...+...++++..+.++++.+.++++.|+++|+++++|..+.. ...... ..
T Consensus 162 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~p~~~~~~s~~~l~~~~~lA~~~g~~i~~H~~E~~~e~~~~~---~~ 238 (442)
T PRK07203 162 RDGEKELQEGVEENIRFIKHIDEAKDDMVEAMFGLHASFTLSDATLEKCREAVKETGRGYHIHVAEGIYDVSDSH---KK 238 (442)
T ss_pred CCcchhHHHHHHHHHHHHHHhcCCCCCceEEEEccCCCcCcCHHHHHHHHHHHHHcCCcEEEEecCChHHHHHHH---HH
Confidence 00111122333444444332 2 1246677888888899999999999999999999999975432 211111 11
Q ss_pred cCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCEEEEecccHHHHHHHHHHHHHHHhcCCcee-eeeecccceeecCC
Q psy6858 219 AGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCT-LYGETLAAAVGTHA 297 (592)
Q Consensus 219 ~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~i~hv~s~~a~~~i~~ar~~~~~~G~~~~-v~~e~~~~~l~~d~ 297 (592)
.|.+ |. + .+.-....+-++.+.|+..-.. +.++.+++. |. . ++++..+..+
T Consensus 239 ~g~~---------~v----~----~l~~~Gll~~~~~~~H~~~~~~-~d~~~la~~----g~--~v~~~P~sn~~l---- 290 (442)
T PRK07203 239 YGKD---------IV----E----RLADFGLLGEKTLAAHCIYLSD-EEIDLLKET----DT--FVVHNPESNMGN---- 290 (442)
T ss_pred cCCC---------HH----H----HHHhCCCCCCCcEEEEeecCCH-HHHHHHHhc----CC--eEEECchhhhhc----
Confidence 2221 11 1 1111223455666667664332 223444445 76 3 2222221111
Q ss_pred CCCCCcccccccceecCCCCCCCCCHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHh
Q psy6858 298 NQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEK 377 (592)
Q Consensus 298 ~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~ 377 (592)
......+.++++.|+.+++|||....+. |. +.++..++++
T Consensus 291 ----------------------~~g~~p~~~~~~~Gv~v~lGtD~~~~d~---------~~---------~~~~a~~~~~ 330 (442)
T PRK07203 291 ----------------------AVGYNPVLEMIKNGILLGLGTDGYTSDM---------FE---------SYKVANFKHK 330 (442)
T ss_pred ----------------------ccCCCCHHHHHHCCCeEEEcCCCCCccH---------HH---------HHHHHHHHhc
Confidence 0111234479999999999999753221 11 5566655655
Q ss_pred hcc-CCCCCHHHHHHHHhHhHHHHcC--CCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEE---eee
Q psy6858 378 GVV-PGILSPEKFVAVTSTNAAKIFN--LYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVC---HGV 451 (592)
Q Consensus 378 ~v~-~~~l~~~e~v~~~T~n~Ak~lg--l~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~---~g~ 451 (592)
... ....+..++++++|.|||+++| +.++.|+|++|+.||||++|.+.+..++ ..+|+..+.. ...
T Consensus 331 ~~~~~~~~~~~~~~~~aT~~gA~~lg~~~~~~~G~l~~G~~ADlvv~d~~~~~~~~--------~~~~~~~~v~~~~~~~ 402 (442)
T PRK07203 331 HAGGDPNVGWPESPAMLFENNNKIAERYFGAKFGILEEGAKADLIIVDYNPPTPLN--------EDNINGHILFGMNGGS 402 (442)
T ss_pred cccCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccCEEEEcCCCCeecC--------ccccccceEeecCCCc
Confidence 321 1123468999999999999999 4567899999999999999988553332 1344444433 347
Q ss_pred eeEEEECCEEEEECCeeeecC
Q psy6858 452 PEYVIVGGRVCVDEGNLRVAQ 472 (592)
Q Consensus 452 ~~~Viv~GkvV~~~g~l~~~~ 472 (592)
|..||++||+|++||+++...
T Consensus 403 v~~v~v~G~~v~~~g~~~~~d 423 (442)
T PRK07203 403 VDTTIVNGKVVMEDRKFLNFD 423 (442)
T ss_pred eEEEEECCEEEEECCcccccC
Confidence 899999999999999986543
No 53
>cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid. Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides.
Probab=100.00 E-value=1.1e-31 Score=286.68 Aligned_cols=362 Identities=22% Similarity=0.271 Sum_probs=236.7
Q ss_pred EEEEccEEEcCCCceeeEEEEECCEEEEeecCCCCC--CCCeEEecCCCEEeeCccccCcCcccccCC-CCChhhHHHHH
Q psy6858 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVP--GGVRVIDAAGSYVIPGGIDPHTHFELELMG-ATSVDDFYHGT 97 (592)
Q Consensus 21 llIkng~Iv~~d~~~~~dV~I~dG~I~~Ig~~~~~~--~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~-~~~~d~~~~~~ 97 (592)
++|+|++|++++....++|+|+||+|++|++....+ .+.++||++|++|||||||+|+|+...... .....+...+.
T Consensus 2 ~~i~~~~v~~~~~~~~~~v~i~~g~I~~v~~~~~~~~~~~~~~id~~g~~v~PG~id~H~H~~~~~~~~~~~~~~~~~~~ 81 (387)
T cd01308 2 TLIKNAEVYAPEYLGKKDILIAGGKILAIEDQLNLPGYENVTVVDLHGKILVPGFIDQHVHIIGGGGEGGPSTRTPEVTL 81 (387)
T ss_pred EEEECcEEeCCCCccceEEEEECCEEEEEeCCcccccCCCCeEEECCCCEEccCeeehhhCcccccCCCcccccCHHHHH
Confidence 589999999987767899999999999999865332 367899999999999999999998652111 11122334556
Q ss_pred HHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccccccCCChHHHHHHHHHHHHcCCcEEEEEEeeCCC
Q psy6858 98 KAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGL 177 (592)
Q Consensus 98 ~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~Gv~~~k~~~~~~~~ 177 (592)
..++++|+||++|+..+. + ...+.+...+.++.+ .+.|+..+..+..|.
T Consensus 82 ~~~~~~G~tt~~d~~~~~-~---------------------------~~~~~~~~~~~~~~~-~~~Gv~~v~~~~~~~-- 130 (387)
T cd01308 82 SDLTTAGVTTVVGCLGTD-G---------------------------ISRSMEDLLAKARAL-EEEGITCFVYTGSYE-- 130 (387)
T ss_pred HHHHhCCceEEecCcCCC-C---------------------------CCCCHHHHHHHHHHH-HHhCCEEEEEecccC--
Confidence 688999999999986221 1 011112222223332 345888776544332
Q ss_pred cCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCEEEE
Q psy6858 178 YMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVV 257 (592)
Q Consensus 178 ~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~i~ 257 (592)
..++++.+.+.... .....+...|..++..+..++|.+.+...+.+.+.+++..+++.+++
T Consensus 131 --~~~~~~~~~~~~~~-----------------~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 191 (387)
T cd01308 131 --VPTRTITGSIRKDL-----------------LLIDKVIGVGEIAISDHRSSQPTVEELARIAAEARVGGLLGGKAGIV 191 (387)
T ss_pred --CCCcCchhhHHHHH-----------------HHHHHhcCcceEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcEE
Confidence 12222322222100 01122222344454555667888888777777777766666765444
Q ss_pred e--cc-cHHHHHHHHH-HHHHHHhcCCceeeeeecccceeecCCCCCCC--ccc-ccc----cceecCCCCCCC--CCHH
Q psy6858 258 H--IM-SKAAGDAMAY-KRKELMKKGKHCTLYGETLAAAVGTHANQIPC--TWH-DQA----AHVLSPPLRPDE--TTPT 324 (592)
Q Consensus 258 h--v~-s~~a~~~i~~-ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~--~~~-~~~----~~~~~pplr~~~--~~~~ 324 (592)
| .. +..+.+.+.. +++. |+ .++ ++|++++..+...+.. ... .+. .+..+|++++++ ...+
T Consensus 192 ~vh~~~~~~~~~~i~~~~~~~----G~--~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~v~i~~~~~~~~~~~~~~~~~~ 264 (387)
T cd01308 192 HIHLGDGKRALSPIFELIEET----EI--PIT-QFLPTHINRTAPLFEQGVEFAKMGGTIDLTSSIDPQFRKEGEVRPSE 264 (387)
T ss_pred EEEeCCchHHHHHHHHHHHhc----CC--Ccc-eeECCcccCCHHHHHHHHHHHHcCCcEEEECCCCccccccCccChHH
Confidence 4 33 3355666633 4444 77 788 9999998876663211 111 111 234566766543 2468
Q ss_pred HHHHHHhcCC---ceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHHHc
Q psy6858 325 HLLTLLNENA---LQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIF 401 (592)
Q Consensus 325 ~l~~~l~~G~---~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~l 401 (592)
.++.+++.|. .++++||++........ .+.+ .+.|..+++..+..+. .++..+++++.++++++|.|||++|
T Consensus 265 ~l~~~~~~g~~~d~i~l~TD~~~~~p~~~~--~g~~--~~~g~~~~~~~~~~~~-~~v~~~~i~~~~al~~~T~npA~~l 339 (387)
T cd01308 265 ALKRLLEQGVPLERITFSSDGNGSLPKFDE--NGNL--VGLGVGSVDTLLREVR-EAVKCGDIPLEVALRVITSNVARIL 339 (387)
T ss_pred HHHHHHHhCCCCCcEEEEECCCCCcccCcc--CCeE--EecCcCcHHHHHHHHH-HHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 8889999985 36999998522111000 1111 2457778887776666 5777788999999999999999999
Q ss_pred CCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEEECCEEEEECCeeee
Q psy6858 402 NLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRV 470 (592)
Q Consensus 402 gl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv~GkvV~~~g~l~~ 470 (592)
|+++ +|+|++|++|||+|||++. .+..|+++|++|++||++..
T Consensus 340 g~~~-~G~i~~G~~ADlvv~d~~~-------------------------~~~~~~~~G~~v~~~~~~~~ 382 (387)
T cd01308 340 KLRK-KGEIQPGFDADLVILDKDL-------------------------DINSVIAKGQIMVRNGKLLV 382 (387)
T ss_pred CCCC-CCCcCCCCcCCEEEEcCCC-------------------------CEEEEEECCEEEEECCeEee
Confidence 9965 8999999999999999871 34689999999999998864
No 54
>PRK06151 N-ethylammeline chlorohydrolase; Provisional
Probab=100.00 E-value=3.1e-31 Score=290.77 Aligned_cols=375 Identities=19% Similarity=0.193 Sum_probs=225.3
Q ss_pred ccEEEEccEEEcCCC-----ceeeEEEEECCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCcccc--------c-
Q psy6858 19 NRLLIKNGKVVNADK-----ISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELE--------L- 84 (592)
Q Consensus 19 ~~llIkng~Iv~~d~-----~~~~dV~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~--------~- 84 (592)
|++||+|++|++.+. ..+++|+|+||+|++||+.... .+.++||+.|++|||||||+|+|+.+. .
T Consensus 1 ~~~li~~~~v~~~d~~~~~~~~~~~VlVe~g~I~~Vg~~~~~-~~~~viD~~g~~vlPGlVdaH~Hl~~~~~~~~~~~~~ 79 (488)
T PRK06151 1 MRTLIKARWVLGFDDGDHRLLRDGEVVFEGDRILFVGHRFDG-EVDRVIDAGNALVGPGFIDLDALSDLDTTILGLDNGP 79 (488)
T ss_pred CeEEEEccEEEEEcCCCCeEEeCcEEEEECCEEEEecCCCCC-CCCeEEeCCCCEEecCEEeeecccchhhhhcccccch
Confidence 578999999975432 2368999999999999986432 246899999999999999999996421 0
Q ss_pred ---C--------------CCCChhhHHH----HHHHHHcCCeeEEeccccC---CCCc---cHHHHHHHHHHHhccCcee
Q psy6858 85 ---M--------------GATSVDDFYH----GTKAAVAGGTTTIIDFALP---RKGE---SLIKTYESWRQKADEKVCC 137 (592)
Q Consensus 85 ---~--------------~~~~~d~~~~----~~~~ala~GtTti~d~~~~---~~~~---~~~~a~~~~~~~~~~~~~~ 137 (592)
. ...+.++.+. +...+|++||||++|+... .... .+...++..... ..+.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~t~e~~~~~a~~~~~e~L~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~a~~~~-GiR~~~ 158 (488)
T PRK06151 80 GWAKGRVWSRDYVEAGRREMYTPEELAFQKRYAFAQLLRNGITTAMPIASLFYRQWAETYAEFAAAAEAAGRL-GLRVYL 158 (488)
T ss_pred hHHhcccCchhhhhcchhhcCCHHHHHHHHHHHHHHHHhcCeeEEehhhhhhccccccccchHHHHHHHHHHc-CCeEEe
Confidence 0 0134444443 4456688999999987421 1111 122222222222 112221
Q ss_pred eeecccc-----c-----c-CC---ChHHHHHHHHHHHH---cCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEE
Q psy6858 138 DYALHVG-----I-----T-WW---SDQVQQEMAELCEK---HGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAM 200 (592)
Q Consensus 138 ~~~~~~~-----~-----~-~~---~~~~~~~~~~lv~~---~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~ 200 (592)
.+.+... . . .. ..+..++..+++++ .|...++..++++..+.+++++|.++++.|+++|.+++
T Consensus 159 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~i~~~~~p~~~~~~s~e~l~~~~~~A~~~g~~v~ 238 (488)
T PRK06151 159 GPAYRSGGSVLEADGSLEVVFDEARGLAGLEEAIAFIKRVDGAHNGLVRGMLAPDRIETCTVDLLRRTAAAARELGCPVR 238 (488)
T ss_pred cchhccCccccccCCCCCccccchhHHHHHHHHHHHHHHhhcccCCceEEEEcCCCCCCCCHHHHHHHHHHHHHCCCcEE
Confidence 1111000 0 0 01 12223445555443 35566788888777778999999999999999999999
Q ss_pred EecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCEEEEecccHHH--------HHHHHHHH
Q psy6858 201 VHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIMSKAA--------GDAMAYKR 272 (592)
Q Consensus 201 vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~i~hv~s~~a--------~~~i~~ar 272 (592)
+|+.++....+...+ ..|.. + + +. . .-....+.++.+.|+..-.. .+.++.++
T Consensus 239 ~H~~e~~~~~~~~~~--~~g~~---------~--~--~~---~-~~~g~l~~r~~l~H~~~l~~~~~~~~~~~~~~~~la 299 (488)
T PRK06151 239 LHCAQGVLEVETVRR--LHGTT---------P--L--EW---L-ADVGLLGPRLLIPHATYISGSPRLNYSGGDDLALLA 299 (488)
T ss_pred EEECCchHHHHHHHH--HcCCC---------H--H--HH---H-HHcCCCCCCcEEEEEEEcCCccccccCCHHHHHHHH
Confidence 998544311111111 11211 0 0 10 0 01122234555666553221 14456666
Q ss_pred HHHHhcCCceeeeeecccceeecCCCCCCCcccccccceecCCCCCCCCCHHHHHHHHhcCCceEEeCCCCCCChhhhhc
Q psy6858 273 KELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKEL 352 (592)
Q Consensus 273 ~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~ 352 (592)
+. |+ .+.. |+... .. . ......+.++++.|+.+++|||..+.+...
T Consensus 300 ~~----g~--~v~~--~P~~~-----~~---~---------------g~~~~p~~~l~~~Gv~v~lGtD~~~~~~~~--- 345 (488)
T PRK06151 300 EH----GV--SIVH--CPLVS-----AR---H---------------GSALNSFDRYREAGINLALGTDTFPPDMVM--- 345 (488)
T ss_pred hc----CC--EEEE--Cchhh-----hh---h---------------ccccccHHHHHHCCCcEEEECCCCCccHHH---
Confidence 66 77 4321 11100 00 0 011122447899999999999974432111
Q ss_pred CCCCCCcCCCCCcchhhHHHHHHHhhcc--CCCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEec
Q psy6858 353 GKDSFTHIPNGVNGVQDRLSVIWEKGVV--PGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTIS 430 (592)
Q Consensus 353 g~~~f~~~p~G~~g~e~~~~~~~~~~v~--~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~ 430 (592)
+.++.....+.+. ...+++.++++++|.|||+++|+.+ +|+|++|+.|||||+|.+.....+
T Consensus 346 ---------------~~~~~~~~~~~~~~~~~~~~~~~al~~aT~~~A~~lg~~~-~G~I~~G~~ADlvvld~~~~~~~~ 409 (488)
T PRK06151 346 ---------------NMRVGLILGRVVEGDLDAASAADLFDAATLGGARALGRDD-LGRLAPGAKADIVVFDLDGLHMGP 409 (488)
T ss_pred ---------------HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhCCCC-CcccCCCCcCCEEEEeCCccccCC
Confidence 2233333333322 1247999999999999999999954 899999999999999987432211
Q ss_pred CCcccccCCCCcccCeEEee---eeeEEEECCEEEEECCeeeecC
Q psy6858 431 AKTHAHACDYNIFEGLVCHG---VPEYVIVGGRVCVDEGNLRVAQ 472 (592)
Q Consensus 431 ~~~~~~~~~~~~~~g~~~~g---~~~~Viv~GkvV~~~g~l~~~~ 472 (592)
.++|+..+.+.+ .|..||++|++||++|+++...
T Consensus 410 --------~~d~~~~lv~~~~~~~v~~v~v~G~~v~~~g~~~~~d 446 (488)
T PRK06151 410 --------VFDPIRTLVTGGSGRDVRAVFVDGRVVMEDGRLPGVD 446 (488)
T ss_pred --------ccCHHHHHHhhCCCCCccEEEECCEEEEECCeecCCC
Confidence 235665555443 6899999999999999997644
No 55
>PRK08204 hypothetical protein; Provisional
Probab=100.00 E-value=4.1e-31 Score=287.75 Aligned_cols=371 Identities=20% Similarity=0.250 Sum_probs=224.3
Q ss_pred ccEEEEccEEEcCCC----ceeeEEEEECCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCcccccC---------
Q psy6858 19 NRLLIKNGKVVNADK----ISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELELM--------- 85 (592)
Q Consensus 19 ~~llIkng~Iv~~d~----~~~~dV~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~--------- 85 (592)
.+++|+|++|++.+. ..+++|+|+||+|++|++....+ +.++||+.|++|||||||+|+|+.....
T Consensus 2 ~~~li~~~~v~~~~~~~~~~~~~~v~V~~g~I~~Vg~~~~~~-~~~viD~~g~~v~PGlId~H~H~~~~~~~~~~~~~~~ 80 (449)
T PRK08204 2 KRTLIRGGTVLTMDPAIGDLPRGDILIEGDRIAAVAPSIEAP-DAEVVDARGMIVMPGLVDTHRHTWQSVLRGIGADWTL 80 (449)
T ss_pred CcEEEECcEEEecCCCCCccccceEEEECCEEEEecCCCCCC-CCeEEeCCCCEEecCEEeeeeccchhhhccccCCCcH
Confidence 467899999997542 24689999999999999865543 6689999999999999999999853211
Q ss_pred ------------CCCChhhHH----HHHHHHHcCCeeEEeccccCCCC-ccHHHHHHHHHHHhccCceeeeeccccccCC
Q psy6858 86 ------------GATSVDDFY----HGTKAAVAGGTTTIIDFALPRKG-ESLIKTYESWRQKADEKVCCDYALHVGITWW 148 (592)
Q Consensus 86 ------------~~~~~d~~~----~~~~~ala~GtTti~d~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (592)
...+.++.+ .+.+.+|++||||++|+...... ......++....... +.+..++.......|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~L~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~G~-r~~~~~~~~~~~~~~ 159 (449)
T PRK08204 81 QTYFREIHGNLGPMFRPEDVYIANLLGALEALDAGVTTLLDWSHINNSPEHADAAIRGLAEAGI-RAVFAHGSPGPSPYW 159 (449)
T ss_pred HHHHHhhcccccccCCHHHHHHHHHHHHHHHHhcCCeEEeecccccCChhHHHHHHHHHHHcCC-eEEEEccccCCCCCC
Confidence 112233333 34456789999999997543221 122222222222211 222222211111122
Q ss_pred C----hHHHHHHHHHHHH--cCCc-EEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCC
Q psy6858 149 S----DQVQQEMAELCEK--HGVN-SFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGI 221 (592)
Q Consensus 149 ~----~~~~~~~~~lv~~--~Gv~-~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~ 221 (592)
. ....++++.+.++ .+.. .+...+..++...++++++.++++.|+++|.++.+|+..+...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~~------------ 227 (449)
T PRK08204 160 PFDSVPHPREDIRRVKKRYFSSDDGLLTLGLAIRGPEFSSWEVARADFRLARELGLPISMHQGFGPWG------------ 227 (449)
T ss_pred CcchhhhhHHHHHHHHHhhccCCCCceEEEEecCCcccCCHHHHHHHHHHHHHcCCcEEEEEcCCCcc------------
Confidence 1 1233344444332 1222 2334445556666788999999999999999999998543210
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHHHhcccCCCEEEEecccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCC
Q psy6858 222 KGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIP 301 (592)
Q Consensus 222 ~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~ 301 (592)
.... .+..... ....+-+..+.|+..-.. +.++.+++. |+ .+. +|+.+..
T Consensus 228 --------~~~~-----~~~~l~~-~g~~~~~~~i~H~~~~~~-~~~~~la~~----g~--~v~--~~P~~~~------- 277 (449)
T PRK08204 228 --------ATPR-----GVEQLHD-AGLLGPDLNLVHGNDLSD-DELKLLADS----GG--SFS--VTPEIEM------- 277 (449)
T ss_pred --------cCCC-----HHHHHHH-CCCCCCCeEEEecCCCCH-HHHHHHHHc----CC--CEE--EChHHHh-------
Confidence 0000 1111111 123344566777764432 335555555 77 332 1221100
Q ss_pred CcccccccceecCCCCCCCCCHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhh---
Q psy6858 302 CTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKG--- 378 (592)
Q Consensus 302 ~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~--- 378 (592)
+. +. ..+| +.++++.|+.+++|||..+.+.. .. |. +.++....++.
T Consensus 278 --~~-g~---~~~~----------~~~~~~~Gv~v~lGtD~~~~~~~-~~-----~~---------~~~~a~~~~~~~~~ 326 (449)
T PRK08204 278 --MM-GH---GYPV----------TGRLLAHGVRPSLGVDVVTSTGG-DM-----FT---------QMRFALQAERARDN 326 (449)
T ss_pred --hh-cC---CCCc----------HHHHHhcCCceeeccccCCCCCc-CH-----HH---------HHHHHHHHHHhhcc
Confidence 00 00 1122 34789999999999997543211 10 10 33333332221
Q ss_pred ----------ccCCCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEE
Q psy6858 379 ----------VVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVC 448 (592)
Q Consensus 379 ----------v~~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~ 448 (592)
.....+++.++++++|.|+|+++|+++++|+|++||.|||||||.+.....+ ..+|++.+.+
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~al~~~T~~gA~~lg~~~~~G~le~Gk~ADlvvld~~~~~~~p--------~~dp~~~lv~ 398 (449)
T PRK08204 327 AVHLREGGMPPPRLTLTARQVLEWATIEGARALGLEDRIGSLTPGKQADLVLIDATDLNLAP--------VHDPVGAVVQ 398 (449)
T ss_pred cccccccccCCCcCCCCHHHHHHHHhHHHHHHcCCCCCCcccCCCCcCCEEEEcCCCccccC--------CcChhhhhee
Confidence 1235689999999999999999999878999999999999999988543322 2455555543
Q ss_pred e---eeeeEEEECCEEEEECCeeeecC
Q psy6858 449 H---GVPEYVIVGGRVCVDEGNLRVAQ 472 (592)
Q Consensus 449 ~---g~~~~Viv~GkvV~~~g~l~~~~ 472 (592)
. .+|..||++||+|+++|+++...
T Consensus 399 ~~~~~~v~~v~v~G~~v~~~~~~~~~d 425 (449)
T PRK08204 399 SAHPGNVDSVMVAGRAVKRNGKLLGVD 425 (449)
T ss_pred ccCCCCceEEEECCEEEEECCEeccCC
Confidence 3 57999999999999999987643
No 56
>TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA. The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases.
Probab=100.00 E-value=2.2e-30 Score=273.82 Aligned_cols=359 Identities=19% Similarity=0.154 Sum_probs=224.7
Q ss_pred EEEEccEEEcCCCceeeEEEEECCEEEEeecCCCCC----CCCeEEecCCCEEeeCccccCcCcccccC-CCCChhhHHH
Q psy6858 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVP----GGVRVIDAAGSYVIPGGIDPHTHFELELM-GATSVDDFYH 95 (592)
Q Consensus 21 llIkng~Iv~~d~~~~~dV~I~dG~I~~Ig~~~~~~----~~~~vIDa~G~~V~PG~ID~HtH~~~~~~-~~~~~d~~~~ 95 (592)
++|+|++|++++.....||+|+||+|++|+++.+.+ ....++|++|++|+|||||+|+|+.+... +.........
T Consensus 2 ~li~n~~v~~~~~~~~~dvlI~~gkI~~Ig~~~~~~~~~~~~~~i~d~~G~~v~PGlID~HvH~~~gg~~~~~~~~~~e~ 81 (389)
T TIGR01975 2 TLLKGAEVYAPEYIGKKDILIANDKIIAIADEIPSTKDFVPNCVVVGLEGMIAVPGFIDQHVHIIGGGGEGGPTTRTPEL 81 (389)
T ss_pred EEEECcEEEcCCcCcceeEEEECCEEEEEcCCccccccCCCCeEEECCCCCEEccCEeehhhccccccccCCCccCCHHH
Confidence 589999999987666789999999999999876543 23345667999999999999999854211 1110112223
Q ss_pred HHHHHHcCCeeEEeccccCCCCccHHH-HHHHHHHHhccCce--eeeec-cccccCCChHHHHHHHHHHHHcCCcEEE-E
Q psy6858 96 GTKAAVAGGTTTIIDFALPRKGESLIK-TYESWRQKADEKVC--CDYAL-HVGITWWSDQVQQEMAELCEKHGVNSFK-T 170 (592)
Q Consensus 96 ~~~~ala~GtTti~d~~~~~~~~~~~~-a~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~lv~~~Gv~~~k-~ 170 (592)
++..++++||||++|+..........+ .+.+.+........ +..+. ....+..+.....++.. . .-+.++| +
T Consensus 82 ~~~e~l~~GvTTv~d~~g~~~~~~~~~~~~a~~~al~~~Gir~~~~~g~~~~p~~t~t~~~~~d~~~-~--d~iiG~~~i 158 (389)
T TIGR01975 82 TLSDITKGGVTTVVGLLGTDGITRHMESLLAKARALEEEGISCYMLTGAYHVPSRTITGSVESDLLL-I--DKVIGVGEI 158 (389)
T ss_pred HHHHHHhCCcEEEecCcccCccccChhhHHHHHHHHHHhCCEEEEEcccccCCCcccccchhhheee-e--hhhcccceE
Confidence 678889999999999864432221111 22233333333222 22222 23334444444444432 1 1344553 6
Q ss_pred EEeeCCCcCCCHHHHHHHHHHHHHcC----Ce--EEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHH
Q psy6858 171 FMAYKGLYMLSDGELYDAFSAIKNLG----AI--AMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRAC 244 (592)
Q Consensus 171 ~~~~~~~~~~~~~~l~~~~~~a~~~g----~~--~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i 244 (592)
-++.+...+.+-++|.++.+.++..| .+ +++|.-++..-.+ ...
T Consensus 159 a~sd~r~~~~~~~~l~~~~~~~~~~g~~~~~~g~~~vH~g~~~~~l~------------------------------~l~ 208 (389)
T TIGR01975 159 AISDHRSAQPTVEHLTNMAAEARVGGLLGGKPGIVNFHVGDSKRALQ------------------------------PIY 208 (389)
T ss_pred EEccCcCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCchhhHH------------------------------HHH
Confidence 67777777889999999999999988 77 9999876542222 233
Q ss_pred HHhcccCCCEEEEe---cc-cHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCcccccccceecCCCCCCC
Q psy6858 245 TIANQVDCPLYVVH---IM-SKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDE 320 (592)
Q Consensus 245 ~la~~~~~pl~i~h---v~-s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr~~~ 320 (592)
.+.++.++|.|..+ +. +..-.+.-..+.++ |....+.....+..+ .+ .. .
T Consensus 209 ~~~~~~di~~~~f~pth~~r~~~l~~~~i~~~~~----gg~iDv~~~~~~~~l-----------~~-------~~----~ 262 (389)
T TIGR01975 209 ELVENTDVPITQFLPTHINRNVPLFEAGLEFAKK----GGTIDLTSSIDPQFR-----------KE-------GE----V 262 (389)
T ss_pred HHHHhcCCChhheecCccCCCHHHHHHHHHHHHh----CCcEEEeCCCCccch-----------hc-------cc----c
Confidence 34445566555433 32 22222222222233 541122211110000 00 00 1
Q ss_pred CCHHHHHHHHhcCCc---eEEeCCCCCC-ChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHh
Q psy6858 321 TTPTHLLTLLNENAL---QTTGSDNCTF-NKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTN 396 (592)
Q Consensus 321 ~~~~~l~~~l~~G~~---~~~gsD~~~~-~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n 396 (592)
...+.+..++++|+. ++++||.... +.. .. .-..+..|+.+++..+. .+..++..++++++++++++|.|
T Consensus 263 ~~~~~~~~~~~~Gv~~~~i~isSD~~gs~p~~-~~----~g~~~~~g~g~~~sl~~-~~~~lv~~g~ls~~eal~~~T~n 336 (389)
T TIGR01975 263 APAEGIKKALEAGVPLEKVTFSSDGNGSQPFF-DE----NGELTGLGVGSFETLFE-EVREAVKDGDVPLEKALRVITSN 336 (389)
T ss_pred ChHHHHHHHHHcCCCcceEEEEeCCCCCCCcc-cc----ccccccCCcCcHHHHHH-HHHHHHHhCCCCHHHHHHHHHHH
Confidence 234567789999986 4999997421 111 00 11234566777665444 34467778889999999999999
Q ss_pred HHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEEECCEEEEECCeeee
Q psy6858 397 AAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRV 470 (592)
Q Consensus 397 ~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv~GkvV~~~g~l~~ 470 (592)
||++||++ ++|+|++|++|||+|||.+ . .+..||++|++++++|++..
T Consensus 337 pA~~Lgl~-~~G~I~~G~~ADlvild~~--~-----------------------~i~~v~~~G~~v~~~g~~~~ 384 (389)
T TIGR01975 337 VAGVLNLT-GKGEISPGNDADLVVLDPD--L-----------------------RIHSVIARGKLMVKDGKACV 384 (389)
T ss_pred HHHHhCCC-CCCeECCCCcCCEEEEcCC--C-----------------------CEEEEEECCEEEEECCEEEe
Confidence 99999996 7999999999999999986 1 24689999999999999864
No 57
>PRK08393 N-ethylammeline chlorohydrolase; Provisional
Probab=100.00 E-value=3.5e-30 Score=277.97 Aligned_cols=368 Identities=24% Similarity=0.283 Sum_probs=224.2
Q ss_pred ccEEEEccEEEcCCCc--eeeEEEEECCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCcccccC-----------
Q psy6858 19 NRLLIKNGKVVNADKI--SDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELELM----------- 85 (592)
Q Consensus 19 ~~llIkng~Iv~~d~~--~~~dV~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~----------- 85 (592)
|+++|+|++|++++.. ..++|+|+||+|++|+++...+ +.++||+.|++|+|||||+|+|+.+...
T Consensus 1 ~~~~i~~~~i~~~~~~~~~~~~i~i~~g~I~~v~~~~~~~-~~~~id~~~~~v~Pg~vd~H~H~~~~~~rg~~~~~~l~~ 79 (424)
T PRK08393 1 MSILIKNGYVIYGENLKVIRADVLIEGNKIVEVKRNINKP-ADTVIDASGSVVSPGFINAHTHSPMVLLRGLADDVPLME 79 (424)
T ss_pred CeEEEECcEEEeCCCCceecceEEEECCEEEEecCCCCCC-CCeEEeCCCCEEccCeeeeccCcchHhhhhccCCCCHHH
Confidence 5789999999998763 4689999999999999865443 5679999999999999999999854211
Q ss_pred ----------CCCChhhHHH----HHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccc-cccCCCh
Q psy6858 86 ----------GATSVDDFYH----GTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHV-GITWWSD 150 (592)
Q Consensus 86 ----------~~~~~d~~~~----~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 150 (592)
...+.++++. +...++++||||+.|+... .....++ ......+....++... ..+....
T Consensus 80 ~l~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~GvTtv~d~~~~--~~~~~~a----~~~~G~r~~~~~~~~~~~~~~~~~ 153 (424)
T PRK08393 80 WLQNYIWPRERKLKRKDIYWGAYLGLLEMIKSGTTTFVDMYFH--MEEVAKA----TLEVGLRGYLSYGMVDLGDEEKRE 153 (424)
T ss_pred HHHhhhccccccCCHHHHHHHHHHHHHHHHhcCceEEeccccC--HHHHHHH----HHHhCCeEEEeceEecCCCccchH
Confidence 1133445554 4455678999999998531 1122222 2222223333333211 1111112
Q ss_pred HHHHHHHHHHHH-c--CCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCch-hhhHHHHHHHHHcCCCCCCC
Q psy6858 151 QVQQEMAELCEK-H--GVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENG-EIIDKNTQKLLAAGIKGPEG 226 (592)
Q Consensus 151 ~~~~~~~~lv~~-~--Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~-~~i~~~~~~~~~~G~~~p~~ 226 (592)
+..++..++++. + +...+...++++..+.+++++|.++++.|+++|+++++|+... ..+....+ ..|.
T Consensus 154 ~~l~~~~~~~~~~~~~~~~~v~~~~~p~~~~~~s~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~---~~g~----- 225 (424)
T PRK08393 154 KEIKETEKLMEFIEKLNSPRVHFVFGPHAPYTCSLALLKWVREKAREWNKLITIHLSETMDEIKQIRE---KYGK----- 225 (424)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCcCCcCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHH---HhCc-----
Confidence 222333333321 2 2223455557777788999999999999999999999997443 22111111 1121
Q ss_pred ccCCCcHHHHHHHHHHHHHHhcccCCCEEEEecccHHHHHHHHHHHHHHHhcCCceeee-eecccceeecCCCCCCCccc
Q psy6858 227 HQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLY-GETLAAAVGTHANQIPCTWH 305 (592)
Q Consensus 227 ~~~s~p~~~e~eav~~~i~la~~~~~pl~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~-~e~~~~~l~~d~~~~~~~~~ 305 (592)
+|.+ .+.-....+.++.+.|+..-. .+.++.+++. |+ .+. +......+.
T Consensus 226 ----~~~~--------~l~~~G~l~~~~~~~H~~~l~-~~~l~~la~~----g~--~v~~~P~sn~~lg----------- 275 (424)
T PRK08393 226 ----SPVV--------LLDEIGFLNEDVIAAHGVWLS-SRDIRILASA----GV--TVAHNPASNMKLG----------- 275 (424)
T ss_pred ----CHHH--------HHHHcCCCCCCcEEEEeecCC-HHHHHHHHhc----CC--EEEECHHHHHhhc-----------
Confidence 1110 111122334455556655322 2334555555 76 332 211111100
Q ss_pred ccccceecCCCCCCCCCHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhc--cCCC
Q psy6858 306 DQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGV--VPGI 383 (592)
Q Consensus 306 ~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v--~~~~ 383 (592)
...+| +.++++.|+.+++|||....+.....+ . +.++..++.+.. ....
T Consensus 276 -----~g~~~----------~~~~~~~Gv~v~lGtD~~~~~~~~d~~-----~---------~~~~a~~~~~~~~~~~~~ 326 (424)
T PRK08393 276 -----SGVMP----------LRKLLNAGVNVALGTDGAASNNNLDML-----R---------EMKLAALLHKVHNLDPTI 326 (424)
T ss_pred -----cCCCC----------HHHHHHCCCcEEEecCCCccCCchhHH-----H---------HHHHHHHHHhhccCCCCc
Confidence 00122 347889999999999975432221111 0 444444444332 1224
Q ss_pred CCHHHHHHHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEe---eeeeEEEECCE
Q psy6858 384 LSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCH---GVPEYVIVGGR 460 (592)
Q Consensus 384 l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~---g~~~~Viv~Gk 460 (592)
+++.++++++|.|||++||+. .|+|++|+.||||++|.+.+...+.. +|+....+. +.|..||++|+
T Consensus 327 ~~~~~al~~aT~~~A~~lg~~--~G~l~~G~~ADlvvld~~~~~~~~~~--------~~~~~~~~~~~~~~v~~v~v~G~ 396 (424)
T PRK08393 327 ADAETVFRMATQNGAKALGLK--AGVIKEGYLADIAVIDFNRPHLRPIN--------NPISHLVYSANGNDVETTIVDGK 396 (424)
T ss_pred CCHHHHHHHHHHHHHHHhCCC--CCccCCCCccCEEEEeCCCCCcCCCC--------ChHHHeeeeCCCCCeeEEEECCE
Confidence 678999999999999999994 69999999999999999876555543 344333333 47999999999
Q ss_pred EEEECCeeee
Q psy6858 461 VCVDEGNLRV 470 (592)
Q Consensus 461 vV~~~g~l~~ 470 (592)
+||+||+++.
T Consensus 397 ~v~~~g~~~~ 406 (424)
T PRK08393 397 IVMLDGEVLT 406 (424)
T ss_pred EEEECCeECC
Confidence 9999998854
No 58
>TIGR01792 urease_alph urease, alpha subunit. This model describes the urease alpha subunit UreC (designated beta or B chain, UreB in Helicobacter species). Accessory proteins for incorporation of the nickel cofactor are usually found in addition to the urease alpha, beta, and gamma subunits. The trusted cutoff is set above the scores of many reported fragments and of a putative second urease alpha chain in Streptomyces coelicolor.
Probab=100.00 E-value=2e-31 Score=287.88 Aligned_cols=360 Identities=22% Similarity=0.231 Sum_probs=226.5
Q ss_pred cccEEEEccEEEcCCCceeeEEEEECCEEEEeecCCCC----------CCCCeEEecCCCEEeeCccccCcCcccccCCC
Q psy6858 18 QNRLLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIV----------PGGVRVIDAAGSYVIPGGIDPHTHFELELMGA 87 (592)
Q Consensus 18 ~~~llIkng~Iv~~d~~~~~dV~I~dG~I~~Ig~~~~~----------~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~~ 87 (592)
.|+++|+|++|+|......+||+|+||+|++|++.... ..+.++||++|++|+|||||+|+|+..+.
T Consensus 65 ~MDlVIkNg~VID~~gi~kaDI~IkDGrIaaIG~~~~p~~~~~v~~~~~~~tEVIDa~GkIV~PGlIDtHvH~~~P~--- 141 (567)
T TIGR01792 65 VLDLVITNALILDWTGIYKADIGIKNGRIVGIGKAGNPDTMDGVDMIVGASTEAISGEGKIVTAGGIDTHVHYISPQ--- 141 (567)
T ss_pred cCcEEEECeEEECCCCeEEEEEEEECCEEEEEcCCCcccccccccccCCCCCeEEECCCCEEEECeEEeecCCCCcc---
Confidence 57899999999997667789999999999999975322 13568999999999999999999985431
Q ss_pred CChhhHHHHHHHHHcCCeeEEeccccCC-----CC--ccHHHHHHHHHHHhccCceeeeeccccccCCChHHHHHHHHHH
Q psy6858 88 TSVDDFYHGTKAAVAGGTTTIIDFALPR-----KG--ESLIKTYESWRQKADEKVCCDYALHVGITWWSDQVQQEMAELC 160 (592)
Q Consensus 88 ~~~d~~~~~~~~ala~GtTti~d~~~~~-----~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv 160 (592)
.+++|+++|+||+++..... +. ....-.+....+... ...++++++..... ...+++.+++
T Consensus 142 --------~~~aAl~gGVTTmI~~Gtgp~~~t~pTt~t~~~~~~~~~l~aa~-~~~in~g~~g~g~~---~~~~~L~e~i 209 (567)
T TIGR01792 142 --------QVQAALDNGITTLIGGGTGPADGTNATTCTPGPWYLHRMLQAAD-GLPINFGFTGKGSG---SGPAALIEQI 209 (567)
T ss_pred --------HHHHHHhCceEEEecCCCccccCCCCcccccchhhHHHHHHHhc-cCCccEEEEeCCcc---chHHHHHHHH
Confidence 26889999999999854311 00 010111121222222 34466776643222 2345666665
Q ss_pred HHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHH
Q psy6858 161 EKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAV 240 (592)
Q Consensus 161 ~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav 240 (592)
+ .|+.+||.+. .+.++++.|.++++.|++++.++++|+|..... |+ + +.
T Consensus 210 ~-aGa~gfK~h~----~y~~s~e~L~~al~~A~e~gv~V~iH~ET~~E~----------g~-------------v--e~- 258 (567)
T TIGR01792 210 E-AGACGLKVHE----DWGATPAAIDNALSVADEYDVQVAVHTDTLNES----------GF-------------V--ED- 258 (567)
T ss_pred H-cCCcEEEeCC----CCCCCHHHHHHHHHHHHHcCCEEEEeCCCcccc----------hH-------------H--HH-
Confidence 4 6888888654 346899999999999999999999999764311 00 1 11
Q ss_pred HHHHHHhcccCCCEEEEecc---cHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCcccccccceecCCCC
Q psy6858 241 TRACTIANQVDCPLYVVHIM---SKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLR 317 (592)
Q Consensus 241 ~~~i~la~~~~~pl~i~hv~---s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr 317 (592)
.++..-+.|+|+.|.. ...+.+.|+.+... ++.|.-+.++.++...+-.+|+.-- ...+-.+|.+.
T Consensus 259 ----t~~a~g~rpIh~~H~~G~g~ghapdi~~~~~~~----~~~~~st~pt~p~~~~~~~e~~~m~---~~~h~l~~~~~ 327 (567)
T TIGR01792 259 ----TIAAFKGRTIHTYHTEGAGGGHAPDIIVVVGYN----NILPSSTNPTLPYTVNTIDEHLDML---MVCHHLNPKIP 327 (567)
T ss_pred ----HHHHHCCCcchhHhhcCCCCCcHHHHHHHcCCC----CcccCCCCCCCCCccCchhhhcCeE---EEeccCCCCCc
Confidence 1222346777777765 35667777777555 5555555666666666555555431 11222333222
Q ss_pred CC---------CCCHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcch---hhHHHHHHHhhc--cCCC
Q psy6858 318 PD---------ETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGV---QDRLSVIWEKGV--VPGI 383 (592)
Q Consensus 318 ~~---------~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~---e~~~~~~~~~~v--~~~~ 383 (592)
.| +++..+---+-+.|+...++||..+... +-+.+... ...| ...++. ....
T Consensus 328 ~d~~~a~~r~r~~t~~ae~~l~d~G~~~~~~sDs~~mgr------------~~~~~~r~~q~a~k~--~~~~g~~~~~~~ 393 (567)
T TIGR01792 328 EDVAFAESRIRKETIAAEDVLQDMGAISMISSDSQAMGR------------IGEVVTRCWQTADKM--KKQRGPLPGDSP 393 (567)
T ss_pred ccchhhhhhccceeccccchhhhCCcEEEecCCchhhCc------------ccceeechHHHHHHH--HHhcCCCccccc
Confidence 21 2333332234567999999999863210 00000000 0011 000000 0000
Q ss_pred -CCHHH---HHHHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEEECC
Q psy6858 384 -LSPEK---FVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGG 459 (592)
Q Consensus 384 -l~~~e---~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv~G 459 (592)
-+.++ .|++.|.|||+++|++.++|+|++||.|||||||++ +|. ..+..||++|
T Consensus 394 ~~~~~rl~r~L~~yT~n~A~a~g~~~~~GsLe~Gk~ADlVv~~~d-----------------~f~-----~~p~~v~~~G 451 (567)
T TIGR01792 394 GNDNNRVKRYVAKYTINPAITHGISDYIGSIEVGKLADLVLWEPA-----------------FFG-----VKPDMVLKGG 451 (567)
T ss_pred CChhhhHHHHHHHHhHHHHHHcCcccCceeeCCCCccCEEEEcCc-----------------ccC-----CChheEEECC
Confidence 01122 299999999999999999999999999999999987 121 1467999999
Q ss_pred EEEEEC-Ceeee
Q psy6858 460 RVCVDE-GNLRV 470 (592)
Q Consensus 460 kvV~~~-g~l~~ 470 (592)
+++|.. |....
T Consensus 452 ~i~~~~~Gd~~a 463 (567)
T TIGR01792 452 LIAWAIMGDPNA 463 (567)
T ss_pred EEEEEeCCCccc
Confidence 999876 65433
No 59
>PRK12393 amidohydrolase; Provisional
Probab=99.98 E-value=1.1e-29 Score=276.47 Aligned_cols=379 Identities=18% Similarity=0.195 Sum_probs=223.0
Q ss_pred ccEEEEccE-EEcCCC----cee-eEEEEECCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCcccccCC------
Q psy6858 19 NRLLIKNGK-VVNADK----ISD-LDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELELMG------ 86 (592)
Q Consensus 19 ~~llIkng~-Iv~~d~----~~~-~dV~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~------ 86 (592)
.+++|+|+. |++.+. ..+ ++|+|+||+|++||+. ....+.++||+.|++|+|||||+|+|+.+.++.
T Consensus 2 ~~~li~~~~~v~~~~~~~~~~~~~~~v~I~~g~I~~Vg~~-~~~~~~~viD~~g~~v~PG~VnaH~Hl~~~~~rg~~~~~ 80 (457)
T PRK12393 2 PSLLIRNAAAIMTGLPGDAARLGGPDIRIRDGRIAAIGAL-TPLPGERVIDATDCVVYPGWVNTHHHLFQSLLKGVPAGI 80 (457)
T ss_pred CcEEEECCeEEEecCCCccccccCceEEEECCEEEEEecc-CCCCCCeEEeCCCCEEecCEeecccCccccccccccccc
Confidence 478999995 676442 234 4899999999999983 333467999999999999999999999653211
Q ss_pred -----------------CCChhhHHH----HHHHHHcCCeeEEeccccC---CCCccHHHHHHHHHHHhccCceeeeecc
Q psy6858 87 -----------------ATSVDDFYH----GTKAAVAGGTTTIIDFALP---RKGESLIKTYESWRQKADEKVCCDYALH 142 (592)
Q Consensus 87 -----------------~~~~d~~~~----~~~~ala~GtTti~d~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 142 (592)
..++++.+. ++..++.+||||+.|+... .......++..+.......+.+..++..
T Consensus 81 ~~~~~~wl~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~~~~~~a~~~~G~R~~~~~~~~ 160 (457)
T PRK12393 81 NQSLTAWLAAVPYRFRARFDEDLFRLAARIGLVELLRSGCTTVADHHYLYHPGMPFDTGDILFDEAEALGMRFVLCRGGA 160 (457)
T ss_pred CCchHHHhhhCcchhhhhCCHHHHHHHHHHHHHHHHhCCccEeecchhhcccccccchHHHHHHHHHHcCCeEEEEcccc
Confidence 123344443 4456688999999998532 2222222332222222222333322221
Q ss_pred -------cccc-CC----ChHHHHHHHHHHHHc-C---CcEEEEEEeeCCC-cCCCHHHHHHHHHHHHHcCCeEEEecCc
Q psy6858 143 -------VGIT-WW----SDQVQQEMAELCEKH-G---VNSFKTFMAYKGL-YMLSDGELYDAFSAIKNLGAIAMVHAEN 205 (592)
Q Consensus 143 -------~~~~-~~----~~~~~~~~~~lv~~~-G---v~~~k~~~~~~~~-~~~~~~~l~~~~~~a~~~g~~~~vHae~ 205 (592)
.... .+ .++..++.+++.+.. + -...++.++++.. +.++++.+.++++.++++|+++++|+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~a~~~g~~~~~H~~e 240 (457)
T PRK12393 161 TQTRGDHPGLPTALRPETLDQMLADVERLVSRYHDASPDSLRRVVVAPTTPTFSLPPELLREVARAARGMGLRLHSHLSE 240 (457)
T ss_pred ccccccCCCCCCcccccCHHHHHHHHHHHHHHhcCCCcCCceEEEEcCCCCCCCcCHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 1110 11 122333444444331 1 1134555666665 7889999999999999999999999854
Q ss_pred hhhhHHHHHHHHH-cCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCEEEEecccHHHHHHHHHHHHHHHhcCCceee
Q psy6858 206 GEIIDKNTQKLLA-AGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTL 284 (592)
Q Consensus 206 ~~~i~~~~~~~~~-~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v 284 (592)
.. . ......+ .|. +|. + +. .-....+.++.+.|+..-. .+.++.+++. |+ .+
T Consensus 241 ~~--~-~~~~~~~~~g~---------~~~----~---~l-~~~g~l~~~~~~~H~~~l~-~~d~~~la~~----g~--~v 293 (457)
T PRK12393 241 TV--D-YVDFCREKYGM---------TPV----Q---FV-AEHDWLGPDVWFAHLVKLD-AEEIALLAQT----GT--GI 293 (457)
T ss_pred CH--H-HHHHHHHHhCC---------CHH----H---HH-HHcCCCCCCeEEEEEecCC-HHHHHHHHHc----CC--eE
Confidence 32 1 1111111 111 111 1 11 1112234455566665433 2234555555 76 33
Q ss_pred -eeecccceeecCCCCCCCcccccccceecCCCCCCCCCHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCC
Q psy6858 285 -YGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNG 363 (592)
Q Consensus 285 -~~e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G 363 (592)
+++.....++ ...+| +.++++.|+.+++|||....+.....+ .
T Consensus 294 ~~~P~sn~~lg----------------~g~~~----------~~~~~~~Gv~v~lGtD~~~~~~~~d~~-----~----- 337 (457)
T PRK12393 294 AHCPQSNGRLG----------------SGIAP----------ALAMEAAGVPVSLGVDGAASNESADML-----S----- 337 (457)
T ss_pred EECchhhhhhc----------------ccCCC----------HHHHHHCCCeEEEecCCcccCCCccHH-----H-----
Confidence 2221111110 01123 347899999999999975533221111 1
Q ss_pred CcchhhHHHHHHHhhc-cCCCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCc
Q psy6858 364 VNGVQDRLSVIWEKGV-VPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNI 442 (592)
Q Consensus 364 ~~g~e~~~~~~~~~~v-~~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~ 442 (592)
+.++..+.++.. ....+++.++++++|.|+|++||++ ++|+|++|+.|||+|+|.+.+...+... . ..++
T Consensus 338 ----~~~~a~~~~~~~~~~~~~~~~~~l~~~T~~~A~~l~~~-~~G~l~~G~~ADlvv~d~~~~~~~~~~~---~-~~~~ 408 (457)
T PRK12393 338 ----EAHAAWLLHRAEGGADATTVEDVVHWGTAGGARVLGLD-AIGTLAVGQAADLAIYDLDDPRFFGLHD---P-AIAP 408 (457)
T ss_pred ----HHHHHHHHhhhcCCCCCCCHHHHHHHHhHHHHHHhCCC-CCCCcCCCCcCCEEEEeCCCcccCCCCC---c-hhhh
Confidence 333333333211 1235899999999999999999995 5899999999999999998765544211 1 1222
Q ss_pred ccCeEEeeeeeEEEECCEEEEECCeeeec
Q psy6858 443 FEGLVCHGVPEYVIVGGRVCVDEGNLRVA 471 (592)
Q Consensus 443 ~~g~~~~g~~~~Viv~GkvV~~~g~l~~~ 471 (592)
+... ..+.+..||++|++||++|+++..
T Consensus 409 ~~~~-~~~~v~~v~v~G~~v~~~~~~~~~ 436 (457)
T PRK12393 409 VACG-GPAPVKALLVNGRPVVENGAIPGL 436 (457)
T ss_pred hccC-CCCCeeEEEECCEEEEECCccCCC
Confidence 2222 245789999999999999987653
No 60
>TIGR03314 Se_ssnA putative selenium metabolism protein SsnA. Members of this protein family are found exclusively in genomes that contain putative set of labile selenium-dependent enzyme accessory proteins as well as homologs of a labile selenium-dependent purine hydroxylase. A mutant in this gene in Escherichia coli had improved stationary phase viability. The function is unknown.
Probab=99.98 E-value=7.6e-30 Score=276.35 Aligned_cols=377 Identities=19% Similarity=0.224 Sum_probs=227.2
Q ss_pred EEEEccEEEcCCC----ceeeEEEEECCEEEEeecCCCC---CCCCeEEecCCCEEeeCccccCcCcccccC--------
Q psy6858 21 LLIKNGKVVNADK----ISDLDIYIENGVIQQLGRNLIV---PGGVRVIDAAGSYVIPGGIDPHTHFELELM-------- 85 (592)
Q Consensus 21 llIkng~Iv~~d~----~~~~dV~I~dG~I~~Ig~~~~~---~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~-------- 85 (592)
++|+|++|++.+. ..+++|+|+||+|.+||+.... ..+.++||++|++|+|||||+|+|+.+...
T Consensus 1 ~li~~~~i~t~~~~~~~~~~~~v~i~~g~I~~vg~~~~~~~~~~~~~~id~~g~~v~PG~vd~H~H~~~~~~rg~~~d~~ 80 (441)
T TIGR03314 1 LLIGNGTAVQLDPTRPIQEGGDIAIDGDVIKAVGPTEELKQKYPEATFIDAKGKLIMPGFINTHNHFYSTFARGMMADIP 80 (441)
T ss_pred CEEECCEEEecCCCCceEeccEEEEECCEEEEEcCchhhcccCCCCeEEeCCCCEEecCeeecccchhhhhhccccccCC
Confidence 4799999996432 2368999999999999975221 135689999999999999999999954211
Q ss_pred -----------------CCCChhhHHHHHH----HHHcCCeeEEeccccCCC-CccHHHHHHHHHHHhccCceeeeeccc
Q psy6858 86 -----------------GATSVDDFYHGTK----AAVAGGTTTIIDFALPRK-GESLIKTYESWRQKADEKVCCDYALHV 143 (592)
Q Consensus 86 -----------------~~~~~d~~~~~~~----~ala~GtTti~d~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~ 143 (592)
...++++.+.+++ .++++||||+.|+..... .....+++.+.......+....+++..
T Consensus 81 ~~~~~~~~l~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~GtTt~~d~~~~~~~~~~~~~~~~~a~~~~GiR~~~~~~~~~ 160 (441)
T TIGR03314 81 PPPDFISILKNLWWRLDRALTLEDVYYSGLICSLDAIKSGCTTVIDHHASPNAITGSLSTIRKAADEAGLRTMLCYETSD 160 (441)
T ss_pred CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHHHcCCeEEEecccccccccchHHHHHHHHHHhCCeEEEeeeeec
Confidence 1134455554443 457899999999864221 111122222222222223333333321
Q ss_pred cc-cCCChHHHHHHHHHHHH-cC--CcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchh-hhHHHHHHHHH
Q psy6858 144 GI-TWWSDQVQQEMAELCEK-HG--VNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGE-IIDKNTQKLLA 218 (592)
Q Consensus 144 ~~-~~~~~~~~~~~~~lv~~-~G--v~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~-~i~~~~~~~~~ 218 (592)
.. .....+..++..++++. ++ ...++..++++..+.++++.+.++.+.|+++++++++|..... .+.... ..
T Consensus 161 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~p~~~~t~s~~~l~~~~~lA~~~~~~i~~H~~E~~~e~~~~~---~~ 237 (441)
T TIGR03314 161 RDGGKEMQEGVEENIAFIKKSSGKEPYLVEAHIGAHAPFTVSDAGLEMCREAVQATGRGFHIHVAEDIYDVEDSH---HK 237 (441)
T ss_pred CCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHH---HH
Confidence 10 01111223333334332 23 2346778888999999999999999999999999999975432 111111 11
Q ss_pred cCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCEEEEecccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCC
Q psy6858 219 AGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHAN 298 (592)
Q Consensus 219 ~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~ 298 (592)
.|. +|. +.+ .-....+-++.+.|+..-.. +.++.+++. |.. .++++..+..+.
T Consensus 238 ~g~---------~~~----~~l----~~~G~l~~~~~~~H~~~~~~-~d~~~la~~----g~~-v~~cP~sn~~l~---- 290 (441)
T TIGR03314 238 YGK---------DIV----ERL----ADFGLLGSKTLAAHCIYLSD-REIELLNET----DTF-VVHNPESNMGNA---- 290 (441)
T ss_pred cCC---------CHH----HHH----HHCCCCCCCeEEEEEecCCH-HHHHHHHHc----CCc-EEECHHHHhhhc----
Confidence 121 111 111 11123345666666653322 233444444 661 233333221110
Q ss_pred CCCCcccccccceecCCCCCCCCCHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhh
Q psy6858 299 QIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKG 378 (592)
Q Consensus 299 ~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~ 378 (592)
...+|+ .++++.|+.+++|||..+.+. |. |+++..++++.
T Consensus 291 ------------~G~~p~----------~~~~~~Gv~v~LGtD~~~~d~---------~~---------em~~a~~~~~~ 330 (441)
T TIGR03314 291 ------------VGYNPV----------LRMFKNGILLGLGTDGYTSDM---------FE---------SLKFANFKHKD 330 (441)
T ss_pred ------------cCCCCH----------HHHHHCCCEEEEcCCCCCcCH---------HH---------HHHHHHHHhcc
Confidence 011333 378999999999999754321 22 66777766654
Q ss_pred ccCC-CCCHHHHHHHHhHhHHHHcC--CCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEE
Q psy6858 379 VVPG-ILSPEKFVAVTSTNAAKIFN--LYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYV 455 (592)
Q Consensus 379 v~~~-~l~~~e~v~~~T~n~Ak~lg--l~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~V 455 (592)
.... .....++++++|.|+|+++| +..++|+|++|+.|||++||++.++.++.....+ .++.+.. .+.|..|
T Consensus 331 ~~~~~~~~~~~~~~~aT~~ga~al~~~l~~~~G~Le~G~~ADlvv~d~~~~~~~~~~~~~~----~lv~~~~-~~~V~~v 405 (441)
T TIGR03314 331 AGGDLNAAWPESPAMLFENNNEIAERNFGAKFGRLEPGAKADLIIVDYNAPTPLTADNING----HILFGMN-GGSVDST 405 (441)
T ss_pred ccCCCCccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcccEEEEcCCCCeeechhhccc----cceecCC-CCeeEEE
Confidence 3221 12356899999999999986 4457899999999999999998776654322211 1332222 5689999
Q ss_pred EECCEEEEECCeeeecC
Q psy6858 456 IVGGRVCVDEGNLRVAQ 472 (592)
Q Consensus 456 iv~GkvV~~~g~l~~~~ 472 (592)
|++|++||+||+++...
T Consensus 406 ~V~G~~v~~~~~~~~~d 422 (441)
T TIGR03314 406 MVNGKVVMEDREFLHFD 422 (441)
T ss_pred EECCEEEEECCcccccC
Confidence 99999999999986543
No 61
>PRK06038 N-ethylammeline chlorohydrolase; Provisional
Probab=99.97 E-value=2.8e-29 Score=271.31 Aligned_cols=370 Identities=20% Similarity=0.271 Sum_probs=225.4
Q ss_pred ccEEEEccEEEcCCC--ceeeEEEEECCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCcccccC-----------
Q psy6858 19 NRLLIKNGKVVNADK--ISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELELM----------- 85 (592)
Q Consensus 19 ~~llIkng~Iv~~d~--~~~~dV~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~----------- 85 (592)
.+++|+|++|++++. ...++|+|+||+|++|++.... .+.++||+.|++|+|||||+|+|+....+
T Consensus 2 ~~~~~~~~~i~~~~~~~~~~~~v~v~~g~I~~i~~~~~~-~~~~~id~~g~~v~PG~vd~H~H~~~~~~~g~~~~~~~~~ 80 (430)
T PRK06038 2 ADIIIKNAYVLTMDAGDLKKGSVVIEDGTITEVSESTPG-DADTVIDAKGSVVMPGLVNTHTHAAMTLFRGYADDLPLAE 80 (430)
T ss_pred CCEEEEccEEEECCCCeeeccEEEEECCEEEEecCCCCC-CCCEEEeCCCCEEecCeeecccCcchhhhhhccCCCCHHH
Confidence 468999999997653 3467999999999999986433 35589999999999999999999964311
Q ss_pred ----------CCCChhhHHH----HHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccc-cccCCCh
Q psy6858 86 ----------GATSVDDFYH----GTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHV-GITWWSD 150 (592)
Q Consensus 86 ----------~~~~~d~~~~----~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 150 (592)
...+.++.+. +...++++||||+.|+... .....+++.+ ...+....++... .......
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~D~~~~--~~~~~~a~~~----~GiR~~~~~~~~d~~~~~~~~ 154 (430)
T PRK06038 81 WLNDHIWPAEAKLTAEDVYAGSLLACLEMIKSGTTSFADMYFY--MDEVAKAVEE----SGLRAALSYGMIDLGDDEKGE 154 (430)
T ss_pred HHHhhhhhchhcCCHHHHHHHHHHHHHHHHhcCceeEEccccC--HHHHHHHHHH----hCCeEEEEchhccCCCccchH
Confidence 1223444443 3445688999999998531 1122222222 1212222222110 0001112
Q ss_pred HHHHHHHHHHHHc-C--CcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCc
Q psy6858 151 QVQQEMAELCEKH-G--VNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGH 227 (592)
Q Consensus 151 ~~~~~~~~lv~~~-G--v~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~ 227 (592)
+..++..++++.. + ...++..++++..+.+++++|.++++.|+++|+++++|+............ ..|..
T Consensus 155 ~~l~~~~~~i~~~~~~~~g~v~~~~~~~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~--~~G~~----- 227 (430)
T PRK06038 155 AELKEGKRFVKEWHGAADGRIKVMYGPHAPYTCSEEFLSKVKKLANKDGVGIHIHVLETEAELNQMKE--QYGMC----- 227 (430)
T ss_pred HHHHHHHHHHHHhcCCCCCceEEEEeCCcCccCCHHHHHHHHHHHHHcCCcEEEEcCCCHHHHHHHHH--HhCCC-----
Confidence 2333444444432 1 234566667788888999999999999999999999998664322111111 11221
Q ss_pred cCCCcHHHHHHHHHHHHHHhcccCCCEEEEecccHHHHHHHHHHHHHHHhcCCceeee-eecccceeecCCCCCCCcccc
Q psy6858 228 QLSRPEEVEAEAVTRACTIANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLY-GETLAAAVGTHANQIPCTWHD 306 (592)
Q Consensus 228 ~~s~p~~~e~eav~~~i~la~~~~~pl~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~-~e~~~~~l~~d~~~~~~~~~~ 306 (592)
| + + . +.-....+.++.+.|+..-... .++.+++. |+ .+. +......+
T Consensus 228 ----~--i--~---~-l~~~g~l~~r~~~~H~~~l~~~-~~~~la~~----g~--~v~~~P~~n~~~------------- 275 (430)
T PRK06038 228 ----S--V--N---Y-LDDIGFLGPDVLAAHCVWLSDG-DIEILRER----GV--NVSHNPVSNMKL------------- 275 (430)
T ss_pred ----H--H--H---H-HHHcCCCCCCeEEEEEecCCHH-HHHHHHhc----CC--EEEEChHHhhhh-------------
Confidence 1 0 0 0 1111233556666666533322 25555555 77 432 21111100
Q ss_pred cccceecCCCCCCCCCHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhc--cCCCC
Q psy6858 307 QAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGV--VPGIL 384 (592)
Q Consensus 307 ~~~~~~~pplr~~~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v--~~~~l 384 (592)
. ...+| +.++++.|+.+++|||.++.+...+.+ . +.++....++.. ....+
T Consensus 276 ~---~~~~p----------~~~~~~~Gv~v~lGtD~~~~~~~~d~~-----~---------~~~~a~~~~~~~~~~~~~~ 328 (430)
T PRK06038 276 A---SGIAP----------VPKLLERGVNVSLGTDGCASNNNLDMF-----E---------EMKTAALLHKVNTMDPTAL 328 (430)
T ss_pred c---cCCCC----------HHHHHHCCCeEEEeCCCCccCCCcCHH-----H---------HHHHHHHHhhhccCCCCcC
Confidence 0 01123 347999999999999975432211111 1 444444444321 23568
Q ss_pred CHHHHHHHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEee---eeeEEEECCEE
Q psy6858 385 SPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHG---VPEYVIVGGRV 461 (592)
Q Consensus 385 ~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g---~~~~Viv~Gkv 461 (592)
++.++++++|.|+|++||++ .|+|++|+.||||++|.+.+...+. .+|+....+.+ .+..||++|++
T Consensus 329 ~~~~al~~aT~~gA~~lg~~--~G~l~~G~~ADlvvld~~~~~~~p~--------~~~~~~~v~~~~~~~v~~v~v~G~~ 398 (430)
T PRK06038 329 PARQVLEMATVNGAKALGIN--TGMLKEGYLADIIIVDMNKPHLTPV--------RDVPSHLVYSASGSDVDTTIVDGRI 398 (430)
T ss_pred CHHHHHHHHhHHHHHHhCCC--CCccCCCcccCEEEEeCCCCccCCC--------CChHHheeEeCCCCceeEEEECCEE
Confidence 99999999999999999994 6999999999999999985433322 24444443332 68999999999
Q ss_pred EEECCeeeec
Q psy6858 462 CVDEGNLRVA 471 (592)
Q Consensus 462 V~~~g~l~~~ 471 (592)
||++|+++..
T Consensus 399 v~~~g~~~~~ 408 (430)
T PRK06038 399 LMEDYKVLCM 408 (430)
T ss_pred EEECCeECCC
Confidence 9999998653
No 62
>PRK07583 cytosine deaminase-like protein; Validated
Probab=99.97 E-value=6.9e-30 Score=276.58 Aligned_cols=363 Identities=21% Similarity=0.199 Sum_probs=227.6
Q ss_pred ccccEEEEccEEEcC------------CCceeeEEEEECCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCccccc
Q psy6858 17 SQNRLLIKNGKVVNA------------DKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELEL 84 (592)
Q Consensus 17 ~~~~llIkng~Iv~~------------d~~~~~dV~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~ 84 (592)
.++.++|+|+++-+. +....+||.|+||+|++|+++...+.+.++||++|++|+|||||+|+|+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~dg~i~~i~~~~~~~~~~~~id~~g~~v~Pg~id~H~Hld~~~ 88 (438)
T PRK07583 9 ESGRYWLKNARVPAALLEGGVPPGDTLEGLVLVDIEIADGKIAAILPAGGAPDELPAVDLKGRMVWPCFVDMHTHLDKGH 88 (438)
T ss_pred CCCcEEEeccccccccccCccCCCcCCCCcEEEEEEEECCEEEEEecCCCCCCCCceecCCCCcccCCcccceeccccce
Confidence 468899999986421 33456899999999999998765444778999999999999999999986541
Q ss_pred CC-----------------------CCChhh----HHHHHHHHHcCCeeEEeccccCC-C-CccHH----HHHHHHHHHh
Q psy6858 85 MG-----------------------ATSVDD----FYHGTKAAVAGGTTTIIDFALPR-K-GESLI----KTYESWRQKA 131 (592)
Q Consensus 85 ~~-----------------------~~~~d~----~~~~~~~ala~GtTti~d~~~~~-~-~~~~~----~a~~~~~~~~ 131 (592)
.. .++.++ +..+++.++++|||+++.++... . ..... +..+.|....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~Gtt~vRt~vd~~~~~~~~~~~~i~~~~~~~~~~~ 168 (438)
T PRK07583 89 IWPRSPNPDGTFPGALDAVTADREAHWSAEDLYRRMEFGLRCAYAHGTSAIRTHLDSFAPQAAISWEVFAELREAWAGRI 168 (438)
T ss_pred ecCCCCCCCCCHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhChhhEEeeeccCCCCcccHHHHHHHHHHHhhccC
Confidence 10 112455 67788899999999777766422 1 11223 3444454444
Q ss_pred ccCceeeeeccccccCCChHHHHHHHHHHHHc-CCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEec-Cchhhh
Q psy6858 132 DEKVCCDYALHVGITWWSDQVQQEMAELCEKH-GVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHA-ENGEII 209 (592)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~-Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHa-e~~~~i 209 (592)
..++++++.+|.....+. +++.+.+.+. |+.+++.++.+ -.+++++++++.|+++|+++.+|+ ++++..
T Consensus 169 ~~~~v~~~p~~~~~~~~~----~eL~~~v~~~~gv~g~~~~~~~-----~~d~~l~~i~~lA~~~G~~v~vH~~E~~~~~ 239 (438)
T PRK07583 169 ALQAVSLVPLDAYLTDAG----ERLADLVAEAGGLLGGVTYMNP-----DLDAQLDRLFRLARERGLDLDLHVDETGDPA 239 (438)
T ss_pred eEEEEEecChhhccCchH----HHHHHHHHHcCCEEeCCCCCCC-----CHHHHHHHHHHHHHHhCCCcEEeECCCCCch
Confidence 445567777776655544 4566666444 56665544432 156889999999999999999998 554322
Q ss_pred HHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCEEEEecccHH------HHHHHHHHHHHHHhcCCcee
Q psy6858 210 DKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIMSKA------AGDAMAYKRKELMKKGKHCT 283 (592)
Q Consensus 210 ~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~i~hv~s~~------a~~~i~~ar~~~~~~G~~~~ 283 (592)
......+ ...+.. .-...++.+.|+..-. ..+.++.+++. |+ .
T Consensus 240 ~~~l~~~-----------------------~~~~~~--~G~~~~v~i~H~~~l~~~~~~~~~~~i~~la~~----gv--~ 288 (438)
T PRK07583 240 SRTLKAV-----------------------AEAALR--NGFEGKVTCGHCCSLAVQPEEQAQATIALVAEA----GI--A 288 (438)
T ss_pred HHHHHHH-----------------------HHHHHH--hCCCCCEEEEeccchhcCCHHHHHHHHHHHHHc----CC--e
Confidence 2111110 011111 1123468888886432 24667777777 88 4
Q ss_pred eee-ecccceeecCCCCCCCcccccccceecCCCCCCCCCHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCC
Q psy6858 284 LYG-ETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPN 362 (592)
Q Consensus 284 v~~-e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~ 362 (592)
|.. .....++. +. . ....|+.| ....+.++++.|+.+++|||+..- .|. |.
T Consensus 289 vv~~P~~~~~l~--~~-~---------~~~~p~~~----~~~~v~~l~~aGV~valGtD~~~d----------~~~--p~ 340 (438)
T PRK07583 289 IVSLPMCNLYLQ--DR-Q---------PGRTPRWR----GVTLVHELKAAGIPVAVASDNCRD----------PFY--AY 340 (438)
T ss_pred EEECcchhhhhc--CC-C---------cCCCCCCC----CcchHHHHHHCCCeEEEEeCCCCC----------CCC--CC
Confidence 432 22221110 00 0 00112222 223456789999999999998531 121 33
Q ss_pred CCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCc
Q psy6858 363 GVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNI 442 (592)
Q Consensus 363 G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~ 442 (592)
|....-..+..... .. ...+++.++++++|.|||+++|++. +|+|++|+.|||||||.+....+.
T Consensus 341 g~~~~~~~~~~a~~-~~-~~~~~~~~al~~~T~~~A~~lg~~~-~G~i~~G~~ADlvv~d~~~~~~~~------------ 405 (438)
T PRK07583 341 GDHDMLEVFREAVR-IL-HLDHPYDDWPAAVTTTPADIMGLPD-LGRIAVGAPADLVLFKARSFSELL------------ 405 (438)
T ss_pred CCcCHHHHHHHHHH-HH-hcCCcHHHHHHHHhHHHHHHcCCCC-CCCcCCCCCCCEEEEcCCCHHHHH------------
Confidence 32211122222221 11 1246889999999999999999965 899999999999999988433221
Q ss_pred ccCeEEeeeeeEEEECCEEEEECC
Q psy6858 443 FEGLVCHGVPEYVIVGGRVCVDEG 466 (592)
Q Consensus 443 ~~g~~~~g~~~~Viv~GkvV~~~g 466 (592)
.-.+.+..||.+|++|....
T Consensus 406 ----~~~~~~~~V~~~G~~v~~~~ 425 (438)
T PRK07583 406 ----SRPQSDRIVLRAGKPIDTTL 425 (438)
T ss_pred ----hcCCCccEEEECCEEecccC
Confidence 11234568999999886553
No 63
>TIGR01178 ade adenine deaminase. The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected.
Probab=99.97 E-value=2.2e-29 Score=276.67 Aligned_cols=325 Identities=23% Similarity=0.297 Sum_probs=218.3
Q ss_pred cEEEEccEEEcCC--CceeeEEEEECCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCcccccCCCCChhhHHHHH
Q psy6858 20 RLLIKNGKVVNAD--KISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELELMGATSVDDFYHGT 97 (592)
Q Consensus 20 ~llIkng~Iv~~d--~~~~~dV~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~~~~~d~~~~~~ 97 (592)
+++|+|++|+|.. ....++|+|+||+|++|++.. +.++||++|++|+|||||+|+|+..+.. ++++| .
T Consensus 1 dlli~n~~ivd~~~~~~~~~dI~I~~g~I~~ig~~~----~~~viDa~G~~v~PG~ID~H~Hi~~~~~---~~~~~---~ 70 (552)
T TIGR01178 1 DIVIKNAKIIDVYNGEIIPGDIAIANGHIAGVGKYN----GVKVIDALGEYAVPGFIDAHIHIESSML---TPSEF---A 70 (552)
T ss_pred CEEEEeeEEEeCCCCcEEeeeEEEECCEEEEecCCC----CCeEEECCCCEEEeCeEecccccCCCCC---ChhHH---H
Confidence 5799999999753 345789999999999998742 4689999999999999999999987643 34555 4
Q ss_pred HHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeecccc--cc----CCChH--HHHHHHHHHHHcCCcEEE
Q psy6858 98 KAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVG--IT----WWSDQ--VQQEMAELCEKHGVNSFK 169 (592)
Q Consensus 98 ~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~--~~~~~~~lv~~~Gv~~~k 169 (592)
+.++.+||||++++....+.....+.++.+.+.+. +..+++.+.+. ++ .++.. ..+++++++++.|+.++|
T Consensus 71 ~~al~~GvTtvv~~P~~~~~v~g~~~~~~~~~~a~-~~~~d~~~~~~s~vp~~~~e~~g~~~~~~~i~~~~~~~~V~glk 149 (552)
T TIGR01178 71 KLVLPHGVTTVVSDPHEIANVNGEDGINFMLNNAK-KTPLNFYFMLPSCVPALQFETSGAVLTAEDIDELMELDEVLGLA 149 (552)
T ss_pred HHHHCCCEEEEEcCCCCCCCCCCHHHHHHHHHHhh-cCCcEEEEECCCCCCCCcccCCCCccCHHHHHHHHcCCCccEEE
Confidence 66899999999987554333344566666666555 44555533222 11 22222 467888988878999999
Q ss_pred EEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcc
Q psy6858 170 TFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQ 249 (592)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~ 249 (592)
.+|.|.+.. ..++++.+.++.+++.|..+.+|++. +..+....++..|+.. .|+....+++
T Consensus 150 e~m~~~~v~-~~d~~~l~~i~~a~~~g~~I~gHap~--l~~~eL~~~~~aGi~~--dHe~~s~~ea-------------- 210 (552)
T TIGR01178 150 EVMDYPGVI-NADIEMLNKINSARKRNKVIDGHCPG--LSGKLLNKYISAGISN--DHESTSIEEA-------------- 210 (552)
T ss_pred EEecchhhc-CCCHHHHHHHHHHHhCCCEEEecCCC--CCHHHHHHHHHcCCCC--CcCcCCHHHH--------------
Confidence 999987643 46777777779999999999999984 3455666667777664 1222111111
Q ss_pred cCCCEEEEecccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCcccccccceecCCCCCCCCCHHHHHHH
Q psy6858 250 VDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTL 329 (592)
Q Consensus 250 ~~~pl~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~ 329 (592)
...++. |+ .+.. ..++. ..+...+..+
T Consensus 211 -------------------~e~~~~----Gm--~~~i--------r~gs~--------------------~~n~~~~~~~ 237 (552)
T TIGR01178 211 -------------------REKLRL----GM--KLMI--------REGSA--------------------AKNLEALHPL 237 (552)
T ss_pred -------------------HHHHHC----CC--EEEE--------eCCcc--------------------ccCHHHHHHH
Confidence 111222 65 2211 00111 1112222222
Q ss_pred H--hcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHHHcCCCCCC
Q psy6858 330 L--NENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKK 407 (592)
Q Consensus 330 l--~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~lgl~~~~ 407 (592)
+ ..+..++++||.... ...+. +..|...+.+++.. ++++.++++++|.|||++||+. +.
T Consensus 238 ~~~~~~~~~~l~TD~~~~---~~~~~--------------~g~l~~~v~~ai~~-g~~~~~Al~maT~npA~~lgl~-~~ 298 (552)
T TIGR01178 238 INEKNCRSLMLCTDDRHV---NDILN--------------EGHINHIVRRAIEH-GVDPFDALQMASINPAEHFGID-VG 298 (552)
T ss_pred HhhcCCceEEEEeCCCCh---hHHHh--------------cCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCC-CC
Confidence 2 245789999994211 11110 23345555555543 5999999999999999999995 58
Q ss_pred ccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEEECCEEEEEC-----Ceee
Q psy6858 408 GVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDE-----GNLR 469 (592)
Q Consensus 408 G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv~GkvV~~~-----g~l~ 469 (592)
|+|++|+.||||+||.... ..+..||++|++|.++ |+..
T Consensus 299 G~I~pG~~ADlvvl~~l~~-----------------------~~v~~v~~~G~~v~~~~~~~~g~~~ 342 (552)
T TIGR01178 299 GLIAPGDPADFVILKDLRN-----------------------FKVNKTYVKGKLLDLNEVFNDEISR 342 (552)
T ss_pred cccCCCCcCCEEEECCCCC-----------------------ceEEEEEECCEEEcccccccCCccc
Confidence 9999999999999984211 1467999999999997 7644
No 64
>PRK09228 guanine deaminase; Provisional
Probab=99.97 E-value=2.8e-29 Score=271.21 Aligned_cols=361 Identities=15% Similarity=0.073 Sum_probs=212.8
Q ss_pred eeEEEEECCEEEEeecCCCC----CCCCeEEecCCCEEeeCccccCcCcccccCCC---------------------CCh
Q psy6858 36 DLDIYIENGVIQQLGRNLIV----PGGVRVIDAAGSYVIPGGIDPHTHFELELMGA---------------------TSV 90 (592)
Q Consensus 36 ~~dV~I~dG~I~~Ig~~~~~----~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~~---------------------~~~ 90 (592)
+++|+|+||+|++||+..+. +.+.++||++|++|||||||+|+|+.+..... .+.
T Consensus 31 ~g~I~I~~g~I~~Vg~~~~~~~~~~~~~~viD~~g~lv~PGlVn~H~H~~~~~~~g~~~~~l~~wl~~~~~~~e~~~~~~ 110 (433)
T PRK09228 31 DGLLLVEDGRIVAAGPYAELRAQLPADAEVTDYRGKLILPGFIDTHIHYPQTDMIASYGEQLLDWLNTYTFPEERRFADP 110 (433)
T ss_pred CeEEEEECCEEEEEcChHHhhhhcCCCCeEEeCCCCEEecceecccccccchhhccCCchHHHHHHHhhhhHHHHHhCCH
Confidence 68999999999999985432 22468999999999999999999985532211 122
Q ss_pred hhHHHH----HHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeecccc-cc-C---CChHHHHHHHHHHH
Q psy6858 91 DDFYHG----TKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVG-IT-W---WSDQVQQEMAELCE 161 (592)
Q Consensus 91 d~~~~~----~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~-~---~~~~~~~~~~~lv~ 161 (592)
++.+.. ...++++||||+.|+..... ...+++.+.......+.+..+++... .+ . ...+..++.+++++
T Consensus 111 ~~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~--~~~~~~~~a~~~~GiR~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 188 (433)
T PRK09228 111 AYAREVAEFFLDELLRNGTTTALVFGTVHP--QSVDALFEAAEARNMRMIAGKVLMDRNAPDGLRDTAESGYDDSKALIE 188 (433)
T ss_pred HHHHHHHHHHHHHHHhCCceEEEeccccCH--HHHHHHHHHHHHcCCeEEeeeeeecCCCCcccccCHHHHHHHHHHHHH
Confidence 233332 34568899999999753221 12233322223233333333332210 11 1 11223334444443
Q ss_pred H-cCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHc-CCeEEEecCchhhhHHHHHHHHH-cCCCCCCCccCCCcHHHHHH
Q psy6858 162 K-HGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNL-GAIAMVHAENGEIIDKNTQKLLA-AGIKGPEGHQLSRPEEVEAE 238 (592)
Q Consensus 162 ~-~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~-g~~~~vHae~~~~i~~~~~~~~~-~G~~~p~~~~~s~p~~~e~e 238 (592)
. .+-...++.++++..+.++++.+.++.+.|+++ +.++++|....... ...+.+ .|.. +..++
T Consensus 189 ~~~~~~~~~~~~~p~~~~t~s~~~l~~~~~lA~~~~~~~i~~Hl~E~~~e---~~~~~~~~g~~---------~~~~~-- 254 (433)
T PRK09228 189 RWHGKGRLLYAITPRFAPTSTPEQLEAAGALAREHPDVWIQTHLSENLDE---IAWVKELFPEA---------RDYLD-- 254 (433)
T ss_pred HHhCCCCceEEEECCcCCcCCHHHHHHHHHHHHHCCCCceEEeecCChhH---HHHHHHHcCCC---------CCHHH--
Confidence 3 232345667777888889999999999999997 99999997543211 111111 1211 11111
Q ss_pred HHHHHHHHhcccCCCEEEEecccHHHHHHHHHHHHHHHhcCCceee-eeecccceeecCCCCCCCcccccccceecCCCC
Q psy6858 239 AVTRACTIANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTL-YGETLAAAVGTHANQIPCTWHDQAAHVLSPPLR 317 (592)
Q Consensus 239 av~~~i~la~~~~~pl~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v-~~e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr 317 (592)
.+.-....+.++.+.|+..-.. +.++.+++. |+ .+ ++......+ . ...+|
T Consensus 255 ----~l~~~G~l~~~~~~~H~~~l~~-~~~~~la~~----g~--~v~~~P~sn~~l-------------g---~g~~~-- 305 (433)
T PRK09228 255 ----VYERYGLLGPRAVFAHCIHLED-RERRRLAET----GA--AIAFCPTSNLFL-------------G---SGLFD-- 305 (433)
T ss_pred ----HHHHcCCCCCCeEEEeccCCCH-HHHHHHHHc----CC--eEEECCccHHhh-------------c---CCCcC--
Confidence 1111123355777888775442 234555555 76 32 222211111 0 01122
Q ss_pred CCCCCHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhH
Q psy6858 318 PDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNA 397 (592)
Q Consensus 318 ~~~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~ 397 (592)
+.++++.|+.+++|||....+. ... |. +.++...+.+. ....+++.++++++|.||
T Consensus 306 --------~~~~~~~Gv~v~lGtD~~~~~~-~d~-----~~---------~~~~~~~~~~~-~~~~~~~~~~l~~aT~~~ 361 (433)
T PRK09228 306 --------LKRADAAGVRVGLGTDVGGGTS-FSM-----LQ---------TMNEAYKVQQL-QGYRLSPFQAFYLATLGG 361 (433)
T ss_pred --------HHHHHHCCCeEEEecCCCCCCC-CCH-----HH---------HHHHHHHHhhc-ccCCCCHHHHHHHHhHHH
Confidence 3478899999999999753211 111 11 34444444433 345689999999999999
Q ss_pred HHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEe---eeeeEEEECCEEEEEC
Q psy6858 398 AKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCH---GVPEYVIVGGRVCVDE 465 (592)
Q Consensus 398 Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~---g~~~~Viv~GkvV~~~ 465 (592)
|+++|+++++|+|++|+.||||+||.+...............++|+..+... ..|..|||+||+|+++
T Consensus 362 A~~lg~~~~~G~l~~Gk~ADlvv~d~~~~~~~~~~~~~~~~~~d~~~~lv~~~~~~~V~~v~VdG~~v~~~ 432 (433)
T PRK09228 362 ARALGLDDRIGNLAPGKEADFVVLDPAATPLLALRTARAESLEELLFALMTLGDDRAVAETYVAGRPVYRR 432 (433)
T ss_pred HHHhCCCCCCcccCCCCCCCEEEEcCCCCccccchhcccCCHHHHHHHHhhcCCccceeEEEECCEEeccC
Confidence 9999997778999999999999999875322110000001123455555543 3789999999999875
No 65
>PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional
Probab=99.97 E-value=2.1e-30 Score=273.86 Aligned_cols=363 Identities=15% Similarity=0.143 Sum_probs=244.7
Q ss_pred EEEEccEEEcCCCcee-eEEEEECCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCcccccCC-----CCChhhHH
Q psy6858 21 LLIKNGKVVNADKISD-LDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELELMG-----ATSVDDFY 94 (592)
Q Consensus 21 llIkng~Iv~~d~~~~-~dV~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~-----~~~~d~~~ 94 (592)
++|+|++|++++.... ++|+|+||+|++|++....+.+.++||++|++|+|||||+|+|......- ..+.++++
T Consensus 2 ~~i~n~~i~~~~~~~~~~~v~IedgkI~~I~~~~~~~~~~~~ID~~G~~l~PG~ID~HvHG~~g~~~~~~~~~~~~~~l~ 81 (382)
T PRK11170 2 YALTNGRIYTGHEVLDDHAVVIADGLIEAVCPVAELPPGIEQRDLNGAILSPGFIDLQLNGCGGVQFNDTAEAISVETLE 81 (382)
T ss_pred EEEEeeEEECCCCeEeCCEEEEECCEEEEecCCccCCCCCeEEeCCCCEEccceeeeeecCccCcccccCccCCCHHHHH
Confidence 6799999999987664 69999999999998764434466899999999999999999997432221 23668898
Q ss_pred HHHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccccccCCChHHHHHHHHHHHHcCCcEEEEEEee
Q psy6858 95 HGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAY 174 (592)
Q Consensus 95 ~~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~Gv~~~k~~~~~ 174 (592)
..+++++++|||+++++..+.+.+.+.++++.++........+++++|++++++++.. +|...-.
T Consensus 82 ~~~~~~~~~GvTt~lpT~it~~~~~~~~~l~~~~~~~~~~~a~~~G~HlEGPfi~~~~----------~Gah~~~----- 146 (382)
T PRK11170 82 IMQKANEKSGCTSFLPTLITSSDELMKQAVRVMREYLAKHPNQALGLHLEGPYLNLVK----------KGTHNPE----- 146 (382)
T ss_pred HHHHHHHhcCEeEEeeeccCCCHHHHHHHHHHHHHHHhcCCCeEEEEEeecCCCCccc----------CCCCCHH-----
Confidence 9999999999999999998888888888888887765555678999999999998752 2432111
Q ss_pred CCCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCE
Q psy6858 175 KGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPL 254 (592)
Q Consensus 175 ~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl 254 (592)
-....+.+++..+.+.+ ..-..+++-+|... .+.++++.+.|+...-||..+..+++. . ++. .|..
T Consensus 147 -~~~~p~~~~~~~~~~~~-~~i~~iTlAPE~~~--~~~i~~l~~~gi~vs~GHs~A~~~~~~-~----a~~----~Ga~- 212 (382)
T PRK11170 147 -FIRKPDAEMVDFLCENA-DVITKVTLAPEMVD--AEVIRKLVEAGIVVSAGHSNATYEEAK-A----GFR----AGIT- 212 (382)
T ss_pred -HhcCcCHHHHHHHHhcc-CCEEEEEECCCCCc--HHHHHHHHHCCcEEEeeCCcCCHHHHH-H----HHH----cCCC-
Confidence 11234566666666543 22123444456442 477888999999999999988877665 2 222 2221
Q ss_pred EEEecccHHHHHHHHHHHHHHHhcCCceeee-eecccceeecCCCCCCCcccccccceecCCCCCCCCCHHHHHHHHhcC
Q psy6858 255 YVVHIMSKAAGDAMAYKRKELMKKGKHCTLY-GETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNEN 333 (592)
Q Consensus 255 ~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~-~e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G 333 (592)
+++|+.+.-. -+ ..|+. |+...++ .+.....+..||.|..+. ...-++++. |
T Consensus 213 ~~THlfNaM~--~~-~hR~p----g~vga~l~~~~~~~elI~Dg~Hv~p~------------------~~~~~~~~k--~ 265 (382)
T PRK11170 213 FATHLYNAMP--YI-TGREP----GLVGAILDEPDVYCGIIADGLHVDYA------------------NIRNAKRLK--G 265 (382)
T ss_pred EEeeccccCC--cc-cCCCc----chhhHhhcCCCcEEEEEcCcccCCHH------------------HHHHHHHhc--C
Confidence 3445442100 00 11222 3311112 122355667788776542 111222222 4
Q ss_pred CceEEeCCCCCCCh---hhhhcCC------CCCCcCCCC-CcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHHHcCC
Q psy6858 334 ALQTTGSDNCTFNK---NQKELGK------DSFTHIPNG-VNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNL 403 (592)
Q Consensus 334 ~~~~~gsD~~~~~~---~~~~~g~------~~f~~~p~G-~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~lgl 403 (592)
...++-||...... ....+|. +.......| ..|-...|...+..++...++++.++++++|.|||++||+
T Consensus 266 ~~~~lvtDa~~~~G~~~g~y~l~~~~v~v~~g~~~~~~G~LAGs~l~l~~~v~~l~~~~~~~~~eal~~aT~npA~~lgl 345 (382)
T PRK11170 266 DKLCLVTDATAPAGANIEQFIFAGKTIYYRDGLCVDENGTLSGSALTMIEAVRNLVEHVGIALDEALRMATLYPARAIGV 345 (382)
T ss_pred CcEEEEeccccCCCCCCCeEEECCEEEEEECCEEECCCCcccccHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCC
Confidence 55667777532111 1111111 112223344 5676777777788888888999999999999999999999
Q ss_pred CCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEEECCEEEEE
Q psy6858 404 YPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVD 464 (592)
Q Consensus 404 ~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv~GkvV~~ 464 (592)
.+++|+|++|++|||+|||.+. .+..||++|+.|+.
T Consensus 346 ~~~~G~i~~G~~ADlvvld~~~-------------------------~v~~v~~~G~~~~~ 381 (382)
T PRK11170 346 DKRLGSIEAGKVANLTAFTRDF-------------------------KITKTIVNGNEVVT 381 (382)
T ss_pred CCCccccCCCCcCCEEEECCCC-------------------------cEEEEEECCEEeec
Confidence 7778999999999999999761 46799999998874
No 66
>cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases. Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric.
Probab=99.97 E-value=2.3e-29 Score=269.51 Aligned_cols=355 Identities=19% Similarity=0.200 Sum_probs=205.6
Q ss_pred EEEccEEEcCCCceeeEEEEECCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCcccccCC---------------
Q psy6858 22 LIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELELMG--------------- 86 (592)
Q Consensus 22 lIkng~Iv~~d~~~~~dV~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~--------------- 86 (592)
.|+|++|+|+. ...++|+|+||+|++||++...+.+.++||++|++|||||||+|+|+.+.+..
T Consensus 1 ~~~~~~~~~~~-~~~~~v~I~~g~I~~Vg~~~~~~~~~~vID~~g~~v~PGlId~H~H~~~~~~~~~~~~~~~~~~~~~~ 79 (398)
T cd01293 1 LLRNARLADGG-TALVDIAIEDGRIAAIGPALAVPPDAEEVDAKGRLVLPAFVDPHIHLDKTFTGGRWPNNSGGTLLEAI 79 (398)
T ss_pred CeeeeEEeCCC-ceEEEEEEECCEEEEEecCCCCCCCCceEeCCCCEEccCEeeeeeccCcccccCCCCCCCccccHHHH
Confidence 47899999974 56789999999999999876555678999999999999999999999653211
Q ss_pred --------CCChhhHH----HHHHHHHcCCeeEEeccccCCCC--ccHHHHHHHHHHHhccCceee-eeccccccCCC-h
Q psy6858 87 --------ATSVDDFY----HGTKAAVAGGTTTIIDFALPRKG--ESLIKTYESWRQKADEKVCCD-YALHVGITWWS-D 150 (592)
Q Consensus 87 --------~~~~d~~~----~~~~~ala~GtTti~d~~~~~~~--~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~-~ 150 (592)
..++++.+ .+...+++.||||++++...... ....+++.+++.......... ..+... ..+. +
T Consensus 80 ~~~~~~~~~~t~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 158 (398)
T cd01293 80 IAWEERKLLLTAEDVKERAERALELAIAHGTTAIRTHVDVDPAAGLKALEALLELREEWADLIDLQIVAFPQH-GLLSTP 158 (398)
T ss_pred HHHHHHHhccChHHHHHHHHHHHHHHHHcChhheeeeecccccccchHHHHHHHHHHHhhccceEEEEeccCc-cccCCC
Confidence 12333333 24456688999999887643221 122334444433322111111 111100 0111 2
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchh-hhHHHHHHHHHcCCCCCCCccC
Q psy6858 151 QVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGE-IIDKNTQKLLAAGIKGPEGHQL 229 (592)
Q Consensus 151 ~~~~~~~~lv~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~-~i~~~~~~~~~~G~~~p~~~~~ 229 (592)
+..+.+++..+ .|..... ...+.....++++++.++++.|+++|+++++|+.... ...
T Consensus 159 ~~~~~v~~~~~-~g~~~~~-~~~~~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~------------------- 217 (398)
T cd01293 159 GGEELMREALK-MGADVVG-GIPPAEIDEDGEESLDTLFELAQEHGLDIDLHLDETDDPGS------------------- 217 (398)
T ss_pred CHHHHHHHHHH-hCCCEEe-CCCCCcCCccHHHHHHHHHHHHHHhCCCCEEEeCCCCCcch-------------------
Confidence 33334444443 3443222 1222223456889999999999999999999975321 100
Q ss_pred CCcHHHHHHHHHHHHHHhcccCC--CEEEEecccH------HHHHHHHHHHHHHHhcCCceeee-eecccceeecCCCCC
Q psy6858 230 SRPEEVEAEAVTRACTIANQVDC--PLYVVHIMSK------AAGDAMAYKRKELMKKGKHCTLY-GETLAAAVGTHANQI 300 (592)
Q Consensus 230 s~p~~~e~eav~~~i~la~~~~~--pl~i~hv~s~------~a~~~i~~ar~~~~~~G~~~~v~-~e~~~~~l~~d~~~~ 300 (592)
..+...+..+.+.+. ++.+.|+... +..+.++.+++. |+ .+. +......+... ...
T Consensus 218 --------~~~~~~~~~~~~~g~~~~~~i~H~~~~~~~~~~~~~~~~~~l~~~----g~--~v~~~p~s~~~l~~~-~~~ 282 (398)
T cd01293 218 --------RTLEELAEEAERRGMQGRVTCSHATALGSLPEAEVSRLADLLAEA----GI--SVVSLPPINLYLQGR-EDT 282 (398)
T ss_pred --------hHHHHHHHHHHHhCCCCCEEeeecchhhcCCHHHHHHHHHHHHHc----CC--eEEeCCCcchhhccc-ccC
Confidence 111122333333332 5667777543 223556777666 77 432 22211111000 000
Q ss_pred CCcccccccceecCCCCCCCCCHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcch--hhHHHHHHHhh
Q psy6858 301 PCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGV--QDRLSVIWEKG 378 (592)
Q Consensus 301 ~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~--e~~~~~~~~~~ 378 (592)
+ | . ......+.++++.|+.+++|||..... | .|++.... +.++......
T Consensus 283 ---~---------~-~---~~~~~~~~~~~~~Gv~v~lGTD~~~~~----------~--~~~~~~~~~~~~~~~~~~~~- 333 (398)
T cd01293 283 ---T---------P-K---RRGVTPVKELRAAGVNVALGSDNVRDP----------W--YPFGSGDMLEVANLAAHIAQ- 333 (398)
T ss_pred ---C---------C-C---CCCCCcHHHHHHCCCeEEECCCCCCCC----------C--cCCCCCCHHHHHHHHHHHHc-
Confidence 0 0 0 112234568999999999999974210 0 01111111 1222221111
Q ss_pred ccCCCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEEEC
Q psy6858 379 VVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVG 458 (592)
Q Consensus 379 v~~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv~ 458 (592)
. ....+..++++++|.|+|+++|+ ++|+|++||.||||+||.+....+. .....+..||++
T Consensus 334 ~-~~~~~~~~al~~aT~~~A~~lg~--~~G~l~~Gk~ADlv~~d~~~~~~~~----------------~~~~~~~~v~~~ 394 (398)
T cd01293 334 L-GTPEDLALALDLITGNAARALGL--EDYGIKVGCPADLVLLDAEDVAEAV----------------ARQPPRRVVIRK 394 (398)
T ss_pred C-CChhhHHHHHHhcChhhhhhcCC--cCcccccCCcceEEEECCCCHHHHH----------------hcCCCccEEEEC
Confidence 1 11234578999999999999999 5799999999999999998443221 111257899999
Q ss_pred CEEE
Q psy6858 459 GRVC 462 (592)
Q Consensus 459 GkvV 462 (592)
|++|
T Consensus 395 G~~~ 398 (398)
T cd01293 395 GRVV 398 (398)
T ss_pred CEEC
Confidence 9875
No 67
>PRK09356 imidazolonepropionase; Validated
Probab=99.97 E-value=4.9e-29 Score=268.04 Aligned_cols=346 Identities=23% Similarity=0.223 Sum_probs=198.9
Q ss_pred cccEEEEccEEEcCCCc--------eeeEEEEECCEEEEeecCCCCCC--CCeEEecCCCEEeeCccccCcCcccccCC-
Q psy6858 18 QNRLLIKNGKVVNADKI--------SDLDIYIENGVIQQLGRNLIVPG--GVRVIDAAGSYVIPGGIDPHTHFELELMG- 86 (592)
Q Consensus 18 ~~~llIkng~Iv~~d~~--------~~~dV~I~dG~I~~Ig~~~~~~~--~~~vIDa~G~~V~PG~ID~HtH~~~~~~~- 86 (592)
+++++|+|++|++.+.. .+++|+|+||+|.+||+....+. +.++||+.|++|||||||+|+|+.+.+..
T Consensus 2 ~~~~li~~~~v~~~~~~~~~~~~~~~~~~v~i~~g~I~~vg~~~~~~~~~~~~~iD~~g~~v~PG~id~H~Hl~~~~~~~ 81 (406)
T PRK09356 2 MADLLWTNAQLATMDGGGMGELGIIEDGAIAIEDGKIVWVGPEADLPAAYAAEVIDAGGKLVTPGLIDCHTHLVFGGNRA 81 (406)
T ss_pred CceEEEECCEEEecCCCCccccccccCcEEEEECCEEEEEeCccccccccCceEEECCCCEEeeceEecCCCcccCCCcH
Confidence 57899999999986532 26899999999999998654332 36899999999999999999999653210
Q ss_pred ------------------------------CCChhhHHH----HHHHHHcCCeeEEeccccCC-CCcc---HHHHHHHHH
Q psy6858 87 ------------------------------ATSVDDFYH----GTKAAVAGGTTTIIDFALPR-KGES---LIKTYESWR 128 (592)
Q Consensus 87 ------------------------------~~~~d~~~~----~~~~ala~GtTti~d~~~~~-~~~~---~~~a~~~~~ 128 (592)
..+.++++. +...++++||||+.++.... ..+. ..+++.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~ 161 (406)
T PRK09356 82 NEFELRLQGVSYEEIAAQGGGILSTVRATRAASEEELFAQALPRLDALLAEGVTTVEIKSGYGLDLETELKMLRVARRLG 161 (406)
T ss_pred HHHHHHHCCCcHHHHHHhcCChHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCceEEEeeccCCCCHHHHHHHHHHHHHHh
Confidence 012233332 33455789999998763111 1111 223333332
Q ss_pred HHhccCcee-eeeccccccCCC---hHHHHH----HHHHHHH-cCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeE
Q psy6858 129 QKADEKVCC-DYALHVGITWWS---DQVQQE----MAELCEK-HGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIA 199 (592)
Q Consensus 129 ~~~~~~~~~-~~~~~~~~~~~~---~~~~~~----~~~lv~~-~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~ 199 (592)
......... ..+.+.....+. +...+. +.+.+.. .++...+.+. .....+++++.++++.|+++|.++
T Consensus 162 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~~l~~~~~~A~~~g~~v 238 (406)
T PRK09356 162 EEHPVDVVTTFLGAHAVPPEYKGRPDAYIDLVCEEMLPAVAEEGLADAVDVFC---ETGAFSVEQSERVLEAAKALGLPV 238 (406)
T ss_pred hhCCCceEeeeeecccCCccccCCHHHHHHHHHHHHhHHHHhcCCcceEEEEe---cCCCCCHHHHHHHHHHHHHCCCCE
Confidence 222111110 011111011111 111122 1222112 2355555432 223568999999999999999999
Q ss_pred EEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCEEEEecccHHHHHHHHHHHHHHHhcC
Q psy6858 200 MVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKG 279 (592)
Q Consensus 200 ~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~i~hv~s~~a~~~i~~ar~~~~~~G 279 (592)
.+|+...... .......+.|.. .+.|+..-. .+.++.+++. |
T Consensus 239 ~~H~~~~~~~-~~~~~~~~~~~~--------------------------------~~~H~~~~~-~~~~~~la~~----g 280 (406)
T PRK09356 239 KIHAEQLSNL-GGAELAAEYGAL--------------------------------SADHLEYLD-EAGIAAMAEA----G 280 (406)
T ss_pred EEEEecccCC-CHHHHHHHcCCc--------------------------------EehHhhcCC-HHHHHHHHHh----C
Confidence 9998531100 011111112211 122322111 1234444445 6
Q ss_pred CceeeeeecccceeecCCCCCCCcccccccceecCCCCCCCCCHHHHHHHHhcCCceEEeCCCCC-CChhhhhcCCCCCC
Q psy6858 280 KHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCT-FNKNQKELGKDSFT 358 (592)
Q Consensus 280 ~~~~v~~e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~~~gsD~~~-~~~~~~~~g~~~f~ 358 (592)
+ .+. +++..... ++ ......+.++++.|+.+++|||+.+ ++...
T Consensus 281 ~--~~~--~~P~~~~~--------------------l~--~~~~~~~~~l~~~Gi~v~lgtD~~~~~~~~~--------- 325 (406)
T PRK09356 281 T--VAV--LLPGAFYF--------------------LR--ETQYPPARLLRDAGVPVALATDFNPGSSPTE--------- 325 (406)
T ss_pred C--EEE--ECccchhh--------------------cC--cccCchHHHHHHCCCeEEEeCCCCCCCChhH---------
Confidence 6 321 22211100 00 0011224468899999999999864 22110
Q ss_pred cCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccC
Q psy6858 359 HIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHAC 438 (592)
Q Consensus 359 ~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~ 438 (592)
.+...+..++...++++.++++++|.|||+++|+++++|+|++|+.|||||+|.+....+.
T Consensus 326 -----------~~~~~~~~~~~~~~l~~~~~l~~~T~~~A~~~g~~~~~G~i~~G~~AD~vvld~~~~~~~~-------- 386 (406)
T PRK09356 326 -----------SLLLAMNMACTLFRLTPEEALAAVTINAARALGRQDTHGSLEVGKKADLVIWDAPSPAELP-------- 386 (406)
T ss_pred -----------HHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhCCCCCceeeCCCCcCCEEEECCCchhhhh--------
Confidence 1122222223345789999999999999999999888999999999999999987432211
Q ss_pred CCCcccCeEEeeeeeEEEECCEEEEE
Q psy6858 439 DYNIFEGLVCHGVPEYVIVGGRVCVD 464 (592)
Q Consensus 439 ~~~~~~g~~~~g~~~~Viv~GkvV~~ 464 (592)
+ .....+|..||++||+||+
T Consensus 387 ----~--~~~~~~v~~v~v~G~~vy~ 406 (406)
T PRK09356 387 ----Y--HFGVNPVETVVKNGEVVVD 406 (406)
T ss_pred ----h--hhCCCCccEEEECCEEeeC
Confidence 1 0123478999999999984
No 68
>PLN02303 urease
Probab=99.97 E-value=1.4e-29 Score=278.98 Aligned_cols=361 Identities=18% Similarity=0.210 Sum_probs=218.9
Q ss_pred cccEEEEccEEEcCCCceeeEEEEECCEEEEeecCCCC---C---------CCCeEEecCCCEEeeCccccCcCcccccC
Q psy6858 18 QNRLLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIV---P---------GGVRVIDAAGSYVIPGGIDPHTHFELELM 85 (592)
Q Consensus 18 ~~~llIkng~Iv~~d~~~~~dV~I~dG~I~~Ig~~~~~---~---------~~~~vIDa~G~~V~PG~ID~HtH~~~~~~ 85 (592)
..+++|+|++|+|......+||+|+||+|++|++.... + .+.++||++|++|+|||||+|+|+..|..
T Consensus 333 ~~DlVItNa~IID~~Gi~kaDI~IkDGrIvaIGkagnp~i~~gv~~~~~~g~~teVIDAeGlIVtPG~ID~HVHf~~Pg~ 412 (837)
T PLN02303 333 SLDTVITNAVIIDYTGIYKADIGIKDGLIVGIGKAGNPDVMDGVTSNMIVGVNTEVIAGEGMIVTAGGIDCHVHFICPQL 412 (837)
T ss_pred cCCEEEeCeEEECCCCcEEeEEEEECCEEEEecCCCCcccccccccccccCCCCeEEECCCCEEEeCEEEeecCCCCCcH
Confidence 46899999999997777889999999999999974211 1 24799999999999999999999965522
Q ss_pred CCCChhhHHHHHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccccccCCChHHHHHHHHHHHHcCC
Q psy6858 86 GATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGV 165 (592)
Q Consensus 86 ~~~~~d~~~~~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~Gv 165 (592)
..+.+..|+..++.+|+|++-++ .+.........++...+.+. ...++++++..... ...+++.++++ .|+
T Consensus 413 ---~~eaLasGVTTai~GGtgp~pnT-~ptt~t~g~e~I~~~L~aa~-~~pvn~Gf~gkG~~---s~l~eL~elie-aGa 483 (837)
T PLN02303 413 ---ATEAIASGITTLVGGGTGPAHGT-CATTCTPAPSHMKLMLQSTD-DLPLNFGFTGKGNT---AKPEGLHEIIK-AGA 483 (837)
T ss_pred ---HHHHHHHhHHHHHhcCCCCCCcc-cCcCCCCCHHHHHHHHHhcc-cCCCcEEEEccCcc---cCHHHHHHHHH-cCc
Confidence 24555555555666665553111 11110011333444333333 34578887754322 33557777754 599
Q ss_pred cEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHH
Q psy6858 166 NSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACT 245 (592)
Q Consensus 166 ~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~ 245 (592)
.+||.+. .+.++++.+.++++.|++++.++++|+|+-.........+...|.
T Consensus 484 ~GfK~h~----d~gvTpelL~raLe~AkelGVpVaIHAEdLnE~G~vE~t~~a~G~------------------------ 535 (837)
T PLN02303 484 MGLKLHE----DWGTTPAAIDNCLDVAEEYDIQVTIHTDTLNESGCVEHSIAAFKG------------------------ 535 (837)
T ss_pred EEEEECC----CCCCCHHHHHHHHHHHHHcCCEEEEecCcccccchHHHHHHHHCC------------------------
Confidence 9998663 235789999999999999999999999883210001111111111
Q ss_pred HhcccCCCEEEEec---ccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCcccccccceecCCCCCC---
Q psy6858 246 IANQVDCPLYVVHI---MSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPD--- 319 (592)
Q Consensus 246 la~~~~~pl~i~hv---~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr~~--- 319 (592)
.|++..|. ....+.+.|+.+... .+.|.-+.++.++...+-.+|+.-- ...+-.+|.+..|
T Consensus 536 ------RpIh~~h~~Ga~gghapdi~~~~~~~----nvlpsstnpt~p~t~nt~~e~~dm~---m~~h~l~~~~~edvaf 602 (837)
T PLN02303 536 ------RTIHTYHSEGAGGGHAPDIIKVCGVK----NVLPSSTNPTRPYTKNTIDEHLDML---MVCHHLDKNIPEDVAF 602 (837)
T ss_pred ------ChHHHHHhcCCCCCCCcHHHHhcCCC----CccCCCCCCCCCCccCchhhhcCeE---EeecCCCCCCcchhhh
Confidence 11111111 133445555554433 4444444455555544444444321 1111122222211
Q ss_pred ------CCCHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHH---hh------c-----
Q psy6858 320 ------ETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWE---KG------V----- 379 (592)
Q Consensus 320 ------~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~---~~------v----- 379 (592)
+++..+---+-+.|+...++||...... +.+....+|+ +. +
T Consensus 603 a~srir~~tiaaed~l~d~G~~s~~~SDs~amgr-------------------~ge~i~r~~q~A~k~~~~~g~l~~~~~ 663 (837)
T PLN02303 603 AESRIRAETIAAEDILHDMGAISIISSDSQAMGR-------------------IGEVITRTWQTAHKMKSQRGALEPRGA 663 (837)
T ss_pred hhhhccchhhccchhhhccCCEEEEeccchhhCc-------------------ccceeeehHHHHHHHHHhcCCCCCccc
Confidence 2333222224567999999999853211 0111111111 00 0
Q ss_pred cCCCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEEECC
Q psy6858 380 VPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGG 459 (592)
Q Consensus 380 ~~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv~G 459 (592)
.....+..++|+..|.|||+++|+++++|+|++||.||||||+++ +|. ..|..||++|
T Consensus 664 ~~dn~rv~~aL~~~TiN~A~AlG~~~~vGSLe~GK~ADlVvw~~~-----------------~fg-----~~~~~vi~~G 721 (837)
T PLN02303 664 DNDNFRIKRYIAKYTINPAIAHGMSHFVGSVEVGKLADLVLWKPA-----------------FFG-----AKPEMVIKGG 721 (837)
T ss_pred cccccCHHHHHHHHhHHHHHHCCcccCceeeCCCcccCEEEeccc-----------------ccC-----CCeeEEEECC
Confidence 123456799999999999999999999999999999999999975 121 2578999999
Q ss_pred EEEEEC-Ceee
Q psy6858 460 RVCVDE-GNLR 469 (592)
Q Consensus 460 kvV~~~-g~l~ 469 (592)
++||.. |...
T Consensus 722 ~ivy~~~gd~n 732 (837)
T PLN02303 722 QIAWAQMGDPN 732 (837)
T ss_pred EEEEccCCCcc
Confidence 999987 5543
No 69
>TIGR02967 guan_deamin guanine deaminase. This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model.
Probab=99.97 E-value=3.3e-29 Score=268.83 Aligned_cols=355 Identities=18% Similarity=0.121 Sum_probs=210.1
Q ss_pred eeEEEEECCEEEEeecCCC----CCCCCeEEecCCCEEeeCccccCcCcccccCC-C--------------------CCh
Q psy6858 36 DLDIYIENGVIQQLGRNLI----VPGGVRVIDAAGSYVIPGGIDPHTHFELELMG-A--------------------TSV 90 (592)
Q Consensus 36 ~~dV~I~dG~I~~Ig~~~~----~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~-~--------------------~~~ 90 (592)
+++|+|+||+|++||+... .+.+.++||++|++|||||||+|+|+.+.... . .+.
T Consensus 6 ~~~V~V~~g~I~~Vg~~~~~~~~~~~~~~viD~~g~~v~PGlId~H~Hl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (401)
T TIGR02967 6 DGLLVVENGRIVAVGDYAELKETLPAGVEIDDYRGHLIMPGFIDTHIHYPQTEMIASYGEQLLEWLEKYTFPTEARFADP 85 (401)
T ss_pred ceEEEEECCEEEEecCcchhhhccCCCCeEEeCCCCEEecceeecccCchhhhhcccCCchHHHHHhhCcCccccccCCH
Confidence 5799999999999998533 23456899999999999999999998543211 0 122
Q ss_pred hhHHH----HHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeecc-----ccccCCChHHHHHHHHHHH
Q psy6858 91 DDFYH----GTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALH-----VGITWWSDQVQQEMAELCE 161 (592)
Q Consensus 91 d~~~~----~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~lv~ 161 (592)
++.+. +...++++||||++|+..... ...+++.+.......+....+... ...........++.+++++
T Consensus 86 ~~~~~~a~~~~~e~l~~GvTtv~d~~~~~~--~~~~~~~~a~~~~G~R~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~ 163 (401)
T TIGR02967 86 DHAEEVAEFFLDELLRNGTTTALVFATVHP--ESVDALFEAALKRGMRMIAGKVLMDRNAPDYLRDTAESSYDESKALIE 163 (401)
T ss_pred HHHHHHHHHHHHHHHhCCCcEEEeccccCH--HHHHHHHHHHHHCCCeEEEeeeeecCCCCcccccCHHHHHHHHHHHHH
Confidence 22222 335678899999999864322 111222222222222222221111 0001112234455666665
Q ss_pred H-cCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHc-CCeEEEecC-chhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHH
Q psy6858 162 K-HGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNL-GAIAMVHAE-NGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAE 238 (592)
Q Consensus 162 ~-~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~-g~~~~vHae-~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~e 238 (592)
+ .+...++..++++..+.+++++|.++++.|+++ |.++++|+. +...+....+ ..|. +|..++
T Consensus 164 ~~~~~g~i~~~~~~~~~~~~s~e~l~~~~~~A~~~~g~~v~~H~~e~~~~~~~~~~---~~~~---------~~~~~~-- 229 (401)
T TIGR02967 164 RWHGKGRLLYAVTPRFAPTSSPEQLAAAGELAKEYPDVYVQTHLSENKDEIAWVKE---LFPE---------AKDYLD-- 229 (401)
T ss_pred HHhCcCCceEEEECCcCCcCcHHHHHHHHHHHHhCCCCeeEEEECCCchHHHHHHH---HcCC---------CCcHHH--
Confidence 4 343457778888888889999999999999999 999999975 4332222111 1111 111111
Q ss_pred HHHHHHHHhcccCCCEEEEecccHHHHHHHHHHHHHHHhcCCceeee-eecccceeecCCCCCCCcccccccceecCCCC
Q psy6858 239 AVTRACTIANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLY-GETLAAAVGTHANQIPCTWHDQAAHVLSPPLR 317 (592)
Q Consensus 239 av~~~i~la~~~~~pl~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~-~e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr 317 (592)
. +.-....+.+..+.|+..-. .+.++.+++. |+ .+. +......+. ...+|
T Consensus 230 ~----l~~~g~lg~~~~~~H~~~~~-~~~~~~l~~~----g~--~v~~~P~~~~~~~----------------~g~~~-- 280 (401)
T TIGR02967 230 V----YDHYGLLGRRSVFAHCIHLS-DEECQRLAET----GA--AIAHCPTSNLFLG----------------SGLFN-- 280 (401)
T ss_pred H----HHHCCCCCCCeEEEecccCC-HHHHHHHHHc----CC--eEEEChHHHHHhc----------------cCCCC--
Confidence 0 11112335566677776433 2335666666 77 432 222211110 01122
Q ss_pred CCCCCHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhH
Q psy6858 318 PDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNA 397 (592)
Q Consensus 318 ~~~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~ 397 (592)
+.++++.|+.+++|||....+.. .. |. +.++...+.+.. ...+++.++++++|.||
T Consensus 281 --------~~~~~~~Gv~v~lGtD~~~~~~~-~~-----~~---------~~~~~~~~~~~~-~~~~~~~~~l~~aT~~~ 336 (401)
T TIGR02967 281 --------LKKALEHGVRVGLGTDVGGGTSF-SM-----LQ---------TLREAYKVSQLQ-GARLSPFEAFYLATLGG 336 (401)
T ss_pred --------HHHHHHCCCeEEEecCCCCCCCc-CH-----HH---------HHHHHHHHhhhc-CCCCCHHHHHHHHHHHH
Confidence 33688999999999997432111 11 00 334434443333 34689999999999999
Q ss_pred HHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEee---eeeEEEECC
Q psy6858 398 AKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHG---VPEYVIVGG 459 (592)
Q Consensus 398 Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g---~~~~Viv~G 459 (592)
|++||++.++|+|++|+.||||+||.+.+...+..........+|+..+...+ .|..||++|
T Consensus 337 A~~lg~~~~~G~i~~G~~ADlvi~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~v~v~G 401 (401)
T TIGR02967 337 ARALDLDDRIGNFEPGKEADFVVLDPAATPLLALRFEGADTLEDKLFKLMYLGDDRNVAETYVAG 401 (401)
T ss_pred HHHhCCcCCccccCCCCccCEEEEcCCCCcccccccccccchhhHHHHheeecCccceeEEEeCC
Confidence 99999977899999999999999998854322100000001246777776655 588999988
No 70
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=99.97 E-value=1.6e-29 Score=266.55 Aligned_cols=352 Identities=16% Similarity=0.154 Sum_probs=236.9
Q ss_pred ccEEEEccEEEcCCCce-eeEEEEECCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCccccc-CCCCChhhHHHH
Q psy6858 19 NRLLIKNGKVVNADKIS-DLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELEL-MGATSVDDFYHG 96 (592)
Q Consensus 19 ~~llIkng~Iv~~d~~~-~~dV~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~-~~~~~~d~~~~~ 96 (592)
|+++|+|++|++++... +++|+|+||+|++|++....+.+.++||++|++|+|||||+|+|..... ....+.+++...
T Consensus 3 ~~~~i~n~~i~~~~~~~~~~~i~V~dGkI~~I~~~~~~~~~~~viD~~G~~i~PGfID~HvHg~~g~~~~~~~~e~~~~~ 82 (380)
T TIGR00221 3 ESYLLKDIAIVTGNEVIDNGAVGINDGKISTVSTEAELEPEIKEIDLPGNVLTPGFIDIHIHGCGGVDTNDASFETLEIM 82 (380)
T ss_pred ceEEEEeeEEECCCCEEeccEEEEECCEEEEEcccccCCCCCeEEECCCCEEccceeeeeeccccCcCCCCCCHHHHHHH
Confidence 57999999999987666 5899999999999987654444668999999999999999999984321 122466899999
Q ss_pred HHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHh-ccCceeeeeccccccCCChHHHHHHHHHHHHcCCcEEEEEEeeC
Q psy6858 97 TKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKA-DEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYK 175 (592)
Q Consensus 97 ~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~Gv~~~k~~~~~~ 175 (592)
++.++++||||++++..+.+.+.+.++++.+.... ..+..+++++|+++++++++. +|...- .
T Consensus 83 ~~~~~~~GvTt~l~t~~t~~~~~~~~~l~~~~~~~~~~~~a~~lG~HlEGPfi~~~~----------~Gah~~------~ 146 (380)
T TIGR00221 83 SERLPKSGCTSFLPTLITQPDENIKQAVKNMREYLAKEKNAQALGLHLEGPFLSPEK----------KGAHPP------E 146 (380)
T ss_pred HHHHHhcCeeEEeeeccCCCHHHHHHHHHHHHHHHhccCCceeeeEeeecCcCChhh----------cCCCCH------H
Confidence 99999999999999998888888888888887754 334678999999999998742 344211 1
Q ss_pred CCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCEE
Q psy6858 176 GLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLY 255 (592)
Q Consensus 176 ~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~ 255 (592)
.....+.+++.++++.+...-..+++-+|.. -..+.++++.+.|+...-||..+..+++. .++.. |.. +
T Consensus 147 ~i~~p~~~~~~~~~~~~~~~i~~vTlAPE~~-~~~~~i~~l~~~gi~vs~GHs~A~~~~~~-~a~~~--------Ga~-~ 215 (380)
T TIGR00221 147 YIREPDVELFKKFLCEAGGVITKVTLAPEED-QHFELIRHLKDAGIIVSAGHTNATYELAK-AAFKA--------GAT-H 215 (380)
T ss_pred HhhCcCHHHHHHHHHhcCCCEEEEEECCCCC-ChHHHHHHHHHCCeEEEeeCCCCCHHHHH-HHHHc--------CCC-e
Confidence 1223577888888876542222344444532 24577888999999999999999877664 22222 221 3
Q ss_pred EEecccHHHHHHHHHHHHHHHhcCCceeee-eecccceeecCCCCCCCcccccccceecCCCCCCCCCHHHHHHHHhcC-
Q psy6858 256 VVHIMSKAAGDAMAYKRKELMKKGKHCTLY-GETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNEN- 333 (592)
Q Consensus 256 i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~-~e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G- 333 (592)
++|+.+.-. -+ ..|+. |+...++ .+-..+.+..||.|..+. ....++++ .|
T Consensus 216 ~THlfNaM~--~~-~hR~p----g~vga~l~~~~~~~elI~Dg~Hv~p~------------------~~~~~~r~--kg~ 268 (380)
T TIGR00221 216 ATHLYNAMS--PI-HHREP----GVIGAVLDHDDVYTEIIADGIHIHPL------------------NIRLAKKL--KGD 268 (380)
T ss_pred eeeeccCCC--Cc-CCCCC----cHHHHHhcCCCcEEEEEcCCCcCCHH------------------HHHHHHHh--cCC
Confidence 344432100 00 01111 2200111 122345666777776542 11111111 23
Q ss_pred CceEEeCCCCCCCh---hhhhcC------CCCCCcCCCC-CcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHHHcCC
Q psy6858 334 ALQTTGSDNCTFNK---NQKELG------KDSFTHIPNG-VNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNL 403 (592)
Q Consensus 334 ~~~~~gsD~~~~~~---~~~~~g------~~~f~~~p~G-~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~lgl 403 (592)
...++-||...... ....+| ++.....+.| ..|....|...+..+++.+++++.++++++|.|||++||+
T Consensus 269 ~~~~lvtDa~~~~g~~~G~y~l~~~~v~~~~g~~~~~~g~LAGs~ltl~~~v~~l~~~~~~~~~eal~~aT~npA~~lgl 348 (380)
T TIGR00221 269 SKLCLVTDSMAAAGAKDGVFIFGGKTVYIREGTCLDSNGTLAGSSLTMIEGARNLVEFTNISLTDAARMSSLNPARALGI 348 (380)
T ss_pred CcEEEEeccccccCCCCceEeECCEEEEEECCEEEcCCCceechhhhHHHHHHHHHHhhCCCHHHHHHHHhHHHHHHhCC
Confidence 35666777432111 111111 1222233444 5777778888888888888899999999999999999999
Q ss_pred CCCCccccCCCCccEEEEeCC
Q psy6858 404 YPKKGVIAEGSDADIVVWNYK 424 (592)
Q Consensus 404 ~~~~G~I~~G~~ADlVv~d~~ 424 (592)
..++|+|++|++|||+|||++
T Consensus 349 ~~~~G~i~~G~~ADlvv~d~~ 369 (380)
T TIGR00221 349 DDRLGSVTVGKDANLVVFTPD 369 (380)
T ss_pred CCCCcccCCCCcCCEEEECCC
Confidence 766899999999999999987
No 71
>PRK05985 cytosine deaminase; Provisional
Probab=99.97 E-value=7.8e-29 Score=264.97 Aligned_cols=350 Identities=18% Similarity=0.191 Sum_probs=205.5
Q ss_pred cccEEEEccEEEcCCCceeeEEEEECCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCcccccCCCC---------
Q psy6858 18 QNRLLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELELMGAT--------- 88 (592)
Q Consensus 18 ~~~llIkng~Iv~~d~~~~~dV~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~~~--------- 88 (592)
+++++|+|++|+++. ..+|+|+||+|.+|++....+.+.++||++|++|+|||||+|+|+...+....
T Consensus 1 ~~~~~i~~~~i~~~~---~~~v~i~~g~i~~i~~~~~~~~~~~~id~~g~~v~Pg~iD~h~h~~~~~~~~~~~~~~~~~~ 77 (391)
T PRK05985 1 MTDLLFRNVRPAGGA---AVDILIRDGRIAAIGPALAAPPGAEVEDGGGALALPGLVDGHIHLDKTFWGDPWYPNEPGPS 77 (391)
T ss_pred CCCEEEECcEECCCC---eeEEEEECCEEEEecCCCCCCCCCcEEECCCCEEecceEeeEEccCccccCCccccCCCCCC
Confidence 357899999999975 56999999999999987554446689999999999999999999964322110
Q ss_pred --------------ChhhHH----HHHHHHHcCCeeEEeccccCCC--CccHHHHHHHHHHHhccCceeeeeccccccCC
Q psy6858 89 --------------SVDDFY----HGTKAAVAGGTTTIIDFALPRK--GESLIKTYESWRQKADEKVCCDYALHVGITWW 148 (592)
Q Consensus 89 --------------~~d~~~----~~~~~ala~GtTti~d~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (592)
+.++++ .+.+.++++|||+++||+...+ +....+++.+.+.........++........+
T Consensus 78 ~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~l~~G~t~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~ 157 (391)
T PRK05985 78 LRERIANERRRRAASGHPAAERALALARAAAAAGTTAMRSHVDVDPDAGLRHLEAVLAARETLRGLIDIQIVAFPQSGVL 157 (391)
T ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHHHHhcCcceEEeeEccCCCcccchHHHHHHHHHHhhCcccEEEEeccCcccc
Confidence 111222 2356678999999999974322 22223444433333221111111111111111
Q ss_pred C-hHHHHHHHHHHHHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCc-hhhhHHHHHHHHHcCCCCCCC
Q psy6858 149 S-DQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAEN-GEIIDKNTQKLLAAGIKGPEG 226 (592)
Q Consensus 149 ~-~~~~~~~~~lv~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~-~~~i~~~~~~~~~~G~~~p~~ 226 (592)
. +...+.+++..+ .|.. +...++++....+++++|.++++.|+++|.++.+|+.. ++...
T Consensus 158 ~~~~~~~ll~~~l~-~g~~-~~gg~~p~~~~~~~~~~l~~~~~~A~~~g~~i~~Hv~e~~d~~~---------------- 219 (391)
T PRK05985 158 SRPGTAELLDAALR-AGAD-VVGGLDPAGIDGDPEGQLDIVFGLAERHGVGIDIHLHEPGELGA---------------- 219 (391)
T ss_pred CCcCHHHHHHHHHH-cCCC-EEeCCCCCCcCCCHHHHHHHHHHHHHHhCCCcEEeeCCCCCccH----------------
Confidence 1 112334554444 3543 22223444556678899999999999999999999643 22111
Q ss_pred ccCCCcHHHHHHHHHHHHHHhcccCC--CEEEEecccH------HHHHHHHHHHHHHHhcCCceeeeeecccceeecCCC
Q psy6858 227 HQLSRPEEVEAEAVTRACTIANQVDC--PLYVVHIMSK------AAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHAN 298 (592)
Q Consensus 227 ~~~s~p~~~e~eav~~~i~la~~~~~--pl~i~hv~s~------~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~ 298 (592)
..+.+.++.+...+. ++.+.|+.+- +..+.++.+++. |+ .|.-.
T Consensus 220 -----------~~~~~~~e~~~~~g~~~~~~i~H~~~l~~~~~~~~~~~i~~lae~----g~--~v~~~----------- 271 (391)
T PRK05985 220 -----------FQLERIAARTRALGMQGRVAVSHAFCLGDLPEREVDRLAERLAEA----GV--AIMTN----------- 271 (391)
T ss_pred -----------HHHHHHHHHHHHhCCCCCEehhhhhhhhcCCHHHHHHHHHHHHHc----CC--eEEEe-----------
Confidence 111122222223333 3667776532 123456666666 87 44211
Q ss_pred CCCCcccccccceecCCCCCCCCCHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCC-cchhh-HHHHHHH
Q psy6858 299 QIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGV-NGVQD-RLSVIWE 376 (592)
Q Consensus 299 ~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~-~g~e~-~~~~~~~ 376 (592)
+|.. .....+.++++.|+.+++|||+...+.. |.+. .-++. ++.....
T Consensus 272 ---------------~~~~---~~~~~~~~l~~~Gv~v~lGtD~~~~~~~------------p~~~~~~~~~~~~~~~~~ 321 (391)
T PRK05985 272 ---------------APGS---VPVPPVAALRAAGVTVFGGNDGIRDTWW------------PYGNGDMLERAMLIGYRS 321 (391)
T ss_pred ---------------CCCC---CCCCCHHHHHHCCCeEEEecCCCCCCCc------------CCCCCcHHHHHHHHHHHH
Confidence 0000 0111244799999999999997431100 1111 11122 1111111
Q ss_pred hhccCCCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEE
Q psy6858 377 KGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVI 456 (592)
Q Consensus 377 ~~v~~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Vi 456 (592)
. + ....++.++++++|.|+|+++|++. ++|++|+.||||+||.+....... ....+..||
T Consensus 322 ~-~-~~~~~~~~al~~~T~~~A~~lg~~~--~~l~~G~~ADlvvld~~~~~~~~~----------------~~~~~~~v~ 381 (391)
T PRK05985 322 G-F-RTDDELAAALDCVTHGGARALGLED--YGLAVGARADFVLVDAETVAEAVV----------------AVPVRRLVV 381 (391)
T ss_pred c-c-CChHHHHHHHHHHcchhHHHhCCcc--cCCCCCCcCCEEEECCCCHHHHHh----------------hCCcceEEE
Confidence 1 1 1122457999999999999999953 459999999999999874321110 011246799
Q ss_pred ECCEEEEECC
Q psy6858 457 VGGRVCVDEG 466 (592)
Q Consensus 457 v~GkvV~~~g 466 (592)
++||+||++|
T Consensus 382 ~~G~~v~~~~ 391 (391)
T PRK05985 382 RGGRIVARDG 391 (391)
T ss_pred ECCEEEecCC
Confidence 9999999986
No 72
>COG1820 NagA N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]
Probab=99.97 E-value=1.7e-29 Score=257.44 Aligned_cols=365 Identities=20% Similarity=0.204 Sum_probs=264.2
Q ss_pred EEEEccEEEcCCCcee-eEEEEECCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCccc--ccCCCCChhhHHHHH
Q psy6858 21 LLIKNGKVVNADKISD-LDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFEL--ELMGATSVDDFYHGT 97 (592)
Q Consensus 21 llIkng~Iv~~d~~~~-~dV~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~--~~~~~~~~d~~~~~~ 97 (592)
.+|+|++|+++....+ +.|.|+||+|.+|.+ .+.|.+.++||.+|.+|+|||||+|+|-.. .+++..+.+.+...+
T Consensus 2 ~~~~~~~i~t~~~~~~~~~v~i~dg~I~~i~~-~~~p~~~e~id~~G~~l~PGfID~hihG~gG~~~~D~~~~~~l~~i~ 80 (380)
T COG1820 2 YALKNGRIFTGHGVLDGGAVVIEDGKIEAVVP-AELPADAEIIDLKGALLVPGFIDLHIHGGGGADFMDAGSVETLETMA 80 (380)
T ss_pred ceeeccEEEcCcceEECcEEEEcCCEEEEEec-CcCCCcceeecCCCCEecccEEEEeecCcCcccccCccCHHHHHHHH
Confidence 4789999999988875 599999999999998 446778999999999999999999999843 455556788899999
Q ss_pred HHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccccccCCChHHHHHHHHHHHHcCCcEEEEEEeeCCC
Q psy6858 98 KAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGL 177 (592)
Q Consensus 98 ~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~Gv~~~k~~~~~~~~ 177 (592)
+..++.|||+++....+.+.+.+.++++..+++.........|+|++.++++++. +|..... -.
T Consensus 81 ~~~~~~GtTsfLpT~iT~~~e~i~~al~~~~e~~~~~ga~ilGiHLEGP~ls~~k----------kGAh~~~------~i 144 (380)
T COG1820 81 EAHLRHGTTSFLPTLITASLEKIKAALRAIREAIAKGGAQILGIHLEGPFLSPEK----------KGAHNPE------YI 144 (380)
T ss_pred HHhhhcCeeeeeeecccCCHHHHHHHHHHHHHHHhccCCceEEEEeecCccCHhh----------ccCCCHH------Hh
Confidence 9999999999998888888888899999988888866677899999999998764 4654322 12
Q ss_pred cCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCEEEE
Q psy6858 178 YMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVV 257 (592)
Q Consensus 178 ~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~i~ 257 (592)
...+++++.++++.++..-..+++-+|+. --.+.++.+.+.|+...-||..+..++.- .++... ...-.|+.
T Consensus 145 r~~~~~~~~~~~~~a~g~i~~vTlAPE~~-~~~e~i~~l~~~giivs~GHS~Atye~~~-----~a~~~G--a~~~THlf 216 (380)
T COG1820 145 RPPDPEELEQLIAAADGLIKLVTLAPELD-GTKELIRLLANAGIVVSIGHSNATYEQAR-----AAFEAG--ATFVTHLF 216 (380)
T ss_pred CCCCHHHHHHHHhhccCceEEEEECCCCC-CCHHHHHHHHhCCeEEEecCccccHHHHH-----HHHHhC--ccEEEeec
Confidence 34688888888887776333455555654 23667888999999999999998866553 232221 11112232
Q ss_pred ecccHHHHHHHHHHHHHHHhcCCceeeeee-cccceeecCCCCCCCcccccccceecCCCCCCCCCHHHHHHHHhcCCce
Q psy6858 258 HIMSKAAGDAMAYKRKELMKKGKHCTLYGE-TLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQ 336 (592)
Q Consensus 258 hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e-~~~~~l~~d~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~ 336 (592)
..|+.- ..|+. |+...++.. ...+.+..||.|..+. ...-+ .-.+-+..+
T Consensus 217 NaMs~l------~hREP----GvvGA~L~~~~~~~eiIaDG~HVhP~------------------~~~ia-~~~kg~~~i 267 (380)
T COG1820 217 NAMSGL------HHREP----GVVGAALDNPDVYAEIIADGVHVHPA------------------AIRLA-LKAKGGDKI 267 (380)
T ss_pred cCCCCC------CCCCC----cccceeecCCCeEEEEEccCcccCHH------------------HHHHH-HhccCCceE
Confidence 333321 12333 553233333 3566677788776542 01111 111223456
Q ss_pred EEeCCCCCCC---hhhhhcC------CCCCCcCCCC-CcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHHHcCCCCC
Q psy6858 337 TTGSDNCTFN---KNQKELG------KDSFTHIPNG-VNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPK 406 (592)
Q Consensus 337 ~~gsD~~~~~---~~~~~~g------~~~f~~~p~G-~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~lgl~~~ 406 (592)
++-||...-. ..+..++ ++.+...++| ++|.-..|...++++++.++++++|+++|+|.||||+||+.++
T Consensus 268 ~LVTDam~a~G~~dg~y~lgg~~V~v~~g~~~~~~GtLAGS~Ltm~~avrn~v~~~~~~~~eAv~maS~~PA~~lgl~~~ 347 (380)
T COG1820 268 VLVTDAMAAAGLPDGEYILGGQTVTVADGARRLEDGTLAGSTLTMDEAVRNLVEWGGISLAEAVRMASLNPAKALGLDDR 347 (380)
T ss_pred EEEEccccccCCCCccEEECCEEEEEECCEEECCCCceeeeeeeHHHHHHHHHHHhCCCHHHHHHHhhhhHHHHhCCcCc
Confidence 7777763211 1111111 2245556666 5888888999999999999999999999999999999999999
Q ss_pred CccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEEECCEEEEE
Q psy6858 407 KGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVD 464 (592)
Q Consensus 407 ~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv~GkvV~~ 464 (592)
+|+|++|++||||+||.+ + ++..||++|++++.
T Consensus 348 ~G~i~~G~~Adlvvld~d---------------~----------~v~~T~i~G~~~~~ 380 (380)
T COG1820 348 LGSIKPGKDADLVVLDDD---------------L----------NVKATWINGEKVFN 380 (380)
T ss_pred ccccCCCcccCEEEECCC---------------C----------cEEEEEECCEEeeC
Confidence 999999999999999988 1 46799999999873
No 73
>PRK09237 dihydroorotase; Provisional
Probab=99.97 E-value=3.1e-28 Score=259.41 Aligned_cols=345 Identities=22% Similarity=0.217 Sum_probs=209.4
Q ss_pred EEEEccEEEcCCC--ceeeEEEEECCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCcccccCCCCChhhHHHHHH
Q psy6858 21 LLIKNGKVVNADK--ISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELELMGATSVDDFYHGTK 98 (592)
Q Consensus 21 llIkng~Iv~~d~--~~~~dV~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~~~~~d~~~~~~~ 98 (592)
++|+|++|+|+.. ...++|+|+||+|++|++....+.+.++||++|++|+|||||+|+|+...... .. .+.++
T Consensus 1 ~~i~~~~v~d~~~~~~~~~~v~i~~g~I~~v~~~~~~~~~~~~iD~~g~~v~PG~iD~H~H~~~~~~~--~~---~~~~~ 75 (380)
T PRK09237 1 LLLRGGRVIDPANGIDGVIDIAIEDGKIAAVAGDIDGSQAKKVIDLSGLYVSPGWIDLHVHVYPGSTP--YG---DEPDE 75 (380)
T ss_pred CEEEeEEEECCCCCcccceEEEEECCEEEEecCCCCCCCCCeEEECCCCEEecCEEEeeecCCCCCCc--cC---CCHHH
Confidence 4799999998653 34589999999999999865544467899999999999999999999754211 11 14578
Q ss_pred HHHcCCeeEEeccccCCCCccHHHHHHHHHHHh-cc--CceeeeeccccccC--CCh---HHHHHHHHHHHH--cCCcEE
Q psy6858 99 AAVAGGTTTIIDFALPRKGESLIKTYESWRQKA-DE--KVCCDYALHVGITW--WSD---QVQQEMAELCEK--HGVNSF 168 (592)
Q Consensus 99 ~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~-~~--~~~~~~~~~~~~~~--~~~---~~~~~~~~lv~~--~Gv~~~ 168 (592)
+++++||||++++.. .+....+.+.+..... .. ..+.++..+..... +.+ -..++++++..+ .|+.+|
T Consensus 76 ~~~~~G~Ttv~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gl 153 (380)
T PRK09237 76 VGVRSGVTTVVDAGS--AGADNFDDFRKLTIEASKTRVLAFLNISRIGLLAQDELADLEDIDADAVAEAVKRNPDFIVGI 153 (380)
T ss_pred HHHhCCcCEEEECCC--CCCCCHHHHHHHHHhhhCcEEEEEEeeecccccccchhcCHhHCCHHHHHHHHHhCcCcEEEE
Confidence 899999999999754 3334555665555544 22 34455555543221 111 134566776653 479999
Q ss_pred EEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhc
Q psy6858 169 KTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIAN 248 (592)
Q Consensus 169 k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~ 248 (592)
|.+|.+........+.+......+++.|.++.+|+++..........++..|
T Consensus 154 k~~~~~~v~~~~~~~~~~~~~~~a~~~g~~v~~H~~~~~~~~~~l~~~l~~g---------------------------- 205 (380)
T PRK09237 154 KARMSSSVVGDNGIEPLELAKAIAAEANLPLMVHIGNPPPSLEEILELLRPG---------------------------- 205 (380)
T ss_pred EEEEecccccccCCchHHHHHHHHHhcCCCEEEEcCCCCCCHHHHHhhccCC----------------------------
Confidence 9998765211111123344444466899999999976432111111111111
Q ss_pred ccCCCEEEEecccHH----------HHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCcccccccceecCCCCC
Q psy6858 249 QVDCPLYVVHIMSKA----------AGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRP 318 (592)
Q Consensus 249 ~~~~pl~i~hv~s~~----------a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr~ 318 (592)
. .++|+.+.. ..+....+.++ |+ .+. +.. +...
T Consensus 206 --~---~~~H~~~~~~~~~~~~~~~~~~~a~~~l~~----G~--~~~-------ig~-g~~~------------------ 248 (380)
T PRK09237 206 --D---ILTHCFNGKPNRILDEDGELRPSVLEALER----GV--RLD-------VGH-GTAS------------------ 248 (380)
T ss_pred --C---EEEecCCCCCCCccCCCCcchHHHHHHHHC----CE--EEE-------ecC-CCCc------------------
Confidence 1 133443221 12233333334 66 221 000 0000
Q ss_pred CCCCHHHHHHHHhcCC-ceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhH
Q psy6858 319 DETTPTHLLTLLNENA-LQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNA 397 (592)
Q Consensus 319 ~~~~~~~l~~~l~~G~-~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~ 397 (592)
.+...+..+++.|. ..+++||..+.+.. ++-...+...+.+++. .++++.++++++|.||
T Consensus 249 --~~~~~~~~l~~~g~~~~~l~tD~~~~~~~----------------~~~~~~l~~~~~~~~~-~g~~~~~al~~aT~n~ 309 (380)
T PRK09237 249 --FSFKVAEAAIAAGILPDTISTDIYCRNRI----------------NGPVYSLATVMSKFLA-LGMPLEEVIAAVTKNA 309 (380)
T ss_pred --ccHHHHHHHHHCCCCceEEECCCCCCCcc----------------cchHhHHHHHHHHHHH-hCCCHHHHHHHHHHHH
Confidence 01122335667785 56899997543210 0101123334444333 4699999999999999
Q ss_pred HHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEe---eeeeEEEECCEEEEECC
Q psy6858 398 AKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCH---GVPEYVIVGGRVCVDEG 466 (592)
Q Consensus 398 Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~---g~~~~Viv~GkvV~~~g 466 (592)
|++||+ +++|+|++|+.|||++|+.+... .+ . .+++...... ..|..||++||+||.+-
T Consensus 310 A~~lgl-~~~G~l~~G~~ADlvv~~~~~~~-~~---~-----~d~~~~~~~~~~~~~~~~~~v~G~~~~~~~ 371 (380)
T PRK09237 310 ADALRL-PELGRLQVGSDADLTLFTLKDGP-FT---L-----TDSEGDSLIGERLLTPLATVRGGKVVLTEQ 371 (380)
T ss_pred HHHcCC-CCCCcCCCCCcCCEEEEeCCCCC-cc---c-----cCCCCCEEEecCCCcceEEEECCEEEEccC
Confidence 999999 67999999999999999976332 11 1 1233222222 37899999999998873
No 74
>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.97 E-value=7.1e-29 Score=262.60 Aligned_cols=349 Identities=22% Similarity=0.221 Sum_probs=203.2
Q ss_pred cccEEEEccEEEc-CCCceeeEEEEECCEEEEeecC-CCCCCCCeEEecCCCEEeeCccccCcCcccccCCC------CC
Q psy6858 18 QNRLLIKNGKVVN-ADKISDLDIYIENGVIQQLGRN-LIVPGGVRVIDAAGSYVIPGGIDPHTHFELELMGA------TS 89 (592)
Q Consensus 18 ~~~llIkng~Iv~-~d~~~~~dV~I~dG~I~~Ig~~-~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~~------~~ 89 (592)
.+.+++++++.++ -....++.|+|+||||++||+. ...+.+.++||++|++|+|||||+|||+.+..... ..
T Consensus 9 ~~~~~~~~~~~~~~~~~i~~~~v~i~~GkI~~vg~~~~~~~~~~~viD~~G~~V~PGLID~HtHl~~~~~~~~~~~~~~~ 88 (406)
T COG1228 9 IAMLATLAGRGLPGLGIIEDGAVLIEDGKIVAVGPEEIDIPAGAEVIDAKGKTVTPGLIDAHTHLGFGGSRGGEFELREA 88 (406)
T ss_pred hhhheeeccccCCCcceeecceEEEECCEEEEecCcccCCCCCCeEEeCCCCEEccceeeccccccccCCccchhhhccc
Confidence 4678889999888 4445569999999999999988 56777899999999999999999999995421110 00
Q ss_pred hhh-----------------------------HHHHHHHHHcCCeeEEeccccCCCCccHHH-HHHHHHHHhccCceeee
Q psy6858 90 VDD-----------------------------FYHGTKAAVAGGTTTIIDFALPRKGESLIK-TYESWRQKADEKVCCDY 139 (592)
Q Consensus 90 ~d~-----------------------------~~~~~~~ala~GtTti~d~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~ 139 (592)
... .....+.+++.|+|+.--...-........ .++..............
T Consensus 89 ~~~~~~i~~~~~gi~~~~~~~~~a~~~g~~~~~~~~l~~~~~~g~~~~e~~~~~g~~~~~e~~~~~~~~~~~~~~~~~~~ 168 (406)
T COG1228 89 GASYTEILAAGGGILPLDRGFTTARDGGLKATALPRLKRAGSAGVTTGERKSGYGLDLETEGGHLRAAAGLKESRPVAVG 168 (406)
T ss_pred CccHHHHHHhcCChhhhHHHHHHHhhcchHHHHHHHHHHHHHcCCcccceeeeecccccccccccchhhhcccccccccc
Confidence 000 001122334566666532211110000000 00001011100000000
Q ss_pred ecc---ccccCCCh----HHHHHHHH---HHHHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhh
Q psy6858 140 ALH---VGITWWSD----QVQQEMAE---LCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEII 209 (592)
Q Consensus 140 ~~~---~~~~~~~~----~~~~~~~~---lv~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i 209 (592)
..+ ...+.+.. ...+.+.. .+...|+.++.-. .....+.++++++++++.+++.|.++.+|++..+
T Consensus 169 ~t~~~~~~~~~~~~~~r~~~~~g~~~~i~~~a~~~l~~~~d~--~~~~~~fs~~e~~~~l~~a~~~g~~v~~HA~~~~-- 244 (406)
T COG1228 169 STPLAAHGVPEERKATREAYVAGARLLIKIVATGGLASFVDA--FCEGGQFSPEEIRAVLAAALKAGIPVKAHAHGAD-- 244 (406)
T ss_pred CccccccCCcccccchHHHHHHHHHHHHHHHHhccccchhhc--cccccccCHHHHHHHHHHHHHCCCceEEEecccc--
Confidence 000 11122222 12222222 2223344444320 1234567999999999999999999999998755
Q ss_pred HHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCEEEEecccHHHHHHHHHHHHHHHhcCCceeeeeecc
Q psy6858 210 DKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETL 289 (592)
Q Consensus 210 ~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~ 289 (592)
..+...++|....+|..+...+.. +.++++- .|. . +.+
T Consensus 245 --g~~~A~~~g~~s~~H~~~ld~~~~---------------------------------~~~a~~~--~g~--~-~~~-- 282 (406)
T COG1228 245 --GIKLAIRLGAKSAEHGTLLDHETA---------------------------------ALLAEKG--AGT--P-VPV-- 282 (406)
T ss_pred --hHHHHHHhCcceehhhhhcCHhHH---------------------------------HHHhhcc--CCC--c-ccc--
Confidence 566666666666555444432211 1111210 032 1 000
Q ss_pred cceeecCCCCCCCcccccccceecCCCCCCCCCHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhh
Q psy6858 290 AAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQD 369 (592)
Q Consensus 290 ~~~l~~d~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~ 369 (592)
|.....+... .........+++.|+.++++||+.+.+..+
T Consensus 283 --------------l~p~~~~~l~------e~~~~~~~~l~~~GV~vai~TD~~~~~~~~-------------------- 322 (406)
T COG1228 283 --------------LLPRTKFELR------ELDYKPARKLIDAGVKVAIGTDHNPGTSHG-------------------- 322 (406)
T ss_pred --------------ccchhhhhhh------cccchhHHHHHHCCCEEEEEcCCCCCchhh--------------------
Confidence 1111111111 111223457899999999999998866311
Q ss_pred HHHHHHHhhccCCCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEe
Q psy6858 370 RLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCH 449 (592)
Q Consensus 370 ~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~ 449 (592)
.+.+....++..+ |++.|+|+.+|.|||++||+..++|+|++||+|||||||.++...+.. +...
T Consensus 323 ~l~~~m~l~~~~g-mtp~EaL~a~T~naA~alG~~~~~Gsle~Gk~ADlvv~~~dp~~~i~y--------------~~~~ 387 (406)
T COG1228 323 SLALEMALAVRLG-MTPEEALKAATINAAKALGLADKVGSLEPGKDADLVVWDGDPLADIPY--------------FLGL 387 (406)
T ss_pred HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCccccccccCCCccCEEEEcCCChhhccc--------------cccC
Confidence 1122222344556 999999999999999999999999999999999999999995544311 1222
Q ss_pred eeeeEEEECCEEEEECCe
Q psy6858 450 GVPEYVIVGGRVCVDEGN 467 (592)
Q Consensus 450 g~~~~Viv~GkvV~~~g~ 467 (592)
..+..||.+|+++++++.
T Consensus 388 ~~v~~v~k~G~~~~~~~~ 405 (406)
T COG1228 388 NKVEAVIKDGKVVYERGS 405 (406)
T ss_pred CceEEEEECCEEeecCCC
Confidence 357899999999998763
No 75
>PRK07572 cytosine deaminase; Validated
Probab=99.97 E-value=7.4e-28 Score=259.98 Aligned_cols=360 Identities=17% Similarity=0.176 Sum_probs=209.8
Q ss_pred cccEEEEccEEEcCCCceeeEEEEECCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCcccccC------------
Q psy6858 18 QNRLLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELELM------------ 85 (592)
Q Consensus 18 ~~~llIkng~Iv~~d~~~~~dV~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~------------ 85 (592)
+|+++|+|++|+++.. ..+|+|+||+|.+|++.... ...++||++|++|+|||||+|+|+...+.
T Consensus 1 ~~~~~i~~~~i~~~~~--~~~i~i~~g~I~~v~~~~~~-~~~~~id~~g~~~~PG~id~h~h~~~~~~~~~~~~~~~g~l 77 (426)
T PRK07572 1 MFDLIVRNANLPDGRT--GIDIGIAGGRIAAVEPGLQA-EAAEEIDAAGRLVSPPFVDPHFHMDATLSYGLPRVNASGTL 77 (426)
T ss_pred CCcEEEECeEECCCCe--eEEEEEECCEEEEecCCCCC-CcCceEeCCCCEEcccceehhhCcchhhccCCCCCCCCCCH
Confidence 3678999999998653 56899999999999986432 35689999999999999999999965321
Q ss_pred -----------CCCChhhHHH----HHHHHHcCCeeEEeccccC-CCCccHHHHHHHHHHHhccCceeee---ecccccc
Q psy6858 86 -----------GATSVDDFYH----GTKAAVAGGTTTIIDFALP-RKGESLIKTYESWRQKADEKVCCDY---ALHVGIT 146 (592)
Q Consensus 86 -----------~~~~~d~~~~----~~~~ala~GtTti~d~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~ 146 (592)
...+.++++. +.+.+++.|||+++|++.. .......+++.+.+.... ..+++ .+.....
T Consensus 78 ~e~l~~~~~~~~~~t~edl~~~a~~~~~e~l~~G~Ttvrd~~d~~~~~~~~~~a~~~~~~~~~--~~~~~~~~a~~~~g~ 155 (426)
T PRK07572 78 LEGIALWGELKPLLTQEALVERALRYCDWAVARGLLAIRSHVDVCDPRLLAVEALLEVRERVA--PYLDLQLVAFPQDGV 155 (426)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCcccEeeccccCCCcccHHHHHHHHHHHhh--ccceEEEEeccChhh
Confidence 1134555554 4455678999999998642 222122333334443222 22221 1111111
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEEEeeCCCcCCCH--HHHHHHHHHHHHcCCeEEEec-CchhhhHHHHHHHHHcCCCC
Q psy6858 147 WWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSD--GELYDAFSAIKNLGAIAMVHA-ENGEIIDKNTQKLLAAGIKG 223 (592)
Q Consensus 147 ~~~~~~~~~~~~lv~~~Gv~~~k~~~~~~~~~~~~~--~~l~~~~~~a~~~g~~~~vHa-e~~~~i~~~~~~~~~~G~~~ 223 (592)
...+...+.++++++ .|+..+... ++....+++ +++..+++.|+++|+++.+|+ +..+.+......+
T Consensus 156 ~~~~~~~~~~~~~l~-~g~d~iGg~--p~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~------- 225 (426)
T PRK07572 156 LRSPGAVDNLERALD-MGVDVVGGI--PHFERTMADGAESVRLLCEIAAERGLRVDMHCDESDDPLSRHIETL------- 225 (426)
T ss_pred ccCccHHHHHHHHHH-cCCCEEeCC--CCCccccchHHHHHHHHHHHHHHcCCCeEEEECCCCChhHHHHHHH-------
Confidence 112233445666665 476555311 222223344 899999999999999999998 4443222211111
Q ss_pred CCCccCCCcHHHHHHHHHHHHHHhcccC--CCEEEEecccH------HHHHHHHHHHHHHHhcCCceee-eeecccceee
Q psy6858 224 PEGHQLSRPEEVEAEAVTRACTIANQVD--CPLYVVHIMSK------AAGDAMAYKRKELMKKGKHCTL-YGETLAAAVG 294 (592)
Q Consensus 224 p~~~~~s~p~~~e~eav~~~i~la~~~~--~pl~i~hv~s~------~a~~~i~~ar~~~~~~G~~~~v-~~e~~~~~l~ 294 (592)
.....+.| ..+.+.|+.+- ...+.++.+++. |+ .| ++......+.
T Consensus 226 --------------------~~~~~~~G~~~~v~~~H~~~l~~~~~~~~~~~~~~la~~----g~--~vv~~P~~n~~l~ 279 (426)
T PRK07572 226 --------------------AAETQRLGLQGRVAGSHLTSMHSMDNYYVSKLIPLMAEA----GV--NAIANPLINITLQ 279 (426)
T ss_pred --------------------HHHHHHhCCCCCEEEEccchhhcCCHHHHHHHHHHHHHc----CC--eEEECchhhhhhc
Confidence 11111122 25666777532 223445555555 76 33 2332221111
Q ss_pred cCCCCCCCcccccccceecCCCCCCCCCHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCC-cchhhHHHH
Q psy6858 295 THANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGV-NGVQDRLSV 373 (592)
Q Consensus 295 ~d~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~-~g~e~~~~~ 373 (592)
.....+ | . ......+.++++.|+.+++|||+... .| .++|. .-++.. ..
T Consensus 280 ~~~~~~-------------~-~---~~g~~~v~~l~~~GV~v~lGtD~~~~----------~~--~~~~~~~~~e~~-~~ 329 (426)
T PRK07572 280 GRHDTY-------------P-K---RRGMTRVPELMAAGINVAFGHDCVMD----------PW--YSLGSGDMLEVA-HM 329 (426)
T ss_pred CCCCCC-------------C-C---CCCCcCHHHHHHCCCcEEEecCCCCC----------CC--CCCCCCCHHHHH-HH
Confidence 100111 1 0 11223456899999999999997420 01 01111 111221 11
Q ss_pred HHHhhccCCCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEeeeee
Q psy6858 374 IWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPE 453 (592)
Q Consensus 374 ~~~~~v~~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~ 453 (592)
.....-......+.++++++|.|+|++||+++ .| |++|+.||||+||.. +|++.+...+.+.
T Consensus 330 ~~~~~~~~~~~~l~~~l~~aT~~~A~~lgl~~-~g-i~~G~~ADlvl~d~~----------------~p~e~i~~~~~~~ 391 (426)
T PRK07572 330 GLHVAQMTGQDAMRACFDAVTVNPARIMGLEG-YG-LEPGCNADLVLLQAR----------------DPIEAIRLRAARL 391 (426)
T ss_pred HHHHHcCCCHHHHHHHHHHhhcchHHhhCCCC-cC-CCCCCcCCEEEEeCC----------------CHHHHHHhcCCce
Confidence 11111011111345777899999999999965 67 999999999999953 2556555666789
Q ss_pred EEEECCEEEEECC
Q psy6858 454 YVIVGGRVCVDEG 466 (592)
Q Consensus 454 ~Viv~GkvV~~~g 466 (592)
.||.+|++|++..
T Consensus 392 ~V~~~G~~v~~~~ 404 (426)
T PRK07572 392 AVIRRGKVIARTP 404 (426)
T ss_pred EEEECCEEEeccC
Confidence 9999999998773
No 76
>PRK09230 cytosine deaminase; Provisional
Probab=99.96 E-value=3.6e-27 Score=253.91 Aligned_cols=361 Identities=16% Similarity=0.175 Sum_probs=209.9
Q ss_pred cccEEEEccEEEcCCCceeeEEEEECCEEEEeecCCCCC-CCCeEEecCCCEEeeCccccCcCcccccCCC---------
Q psy6858 18 QNRLLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVP-GGVRVIDAAGSYVIPGGIDPHTHFELELMGA--------- 87 (592)
Q Consensus 18 ~~~llIkng~Iv~~d~~~~~dV~I~dG~I~~Ig~~~~~~-~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~~--------- 87 (592)
...++|+|++|+++.. ..+|+|+||+|.+|++....+ .+.++||++|++|||||||+|+|+.+.+...
T Consensus 3 ~~~~li~~~~~~~~~~--~~~i~i~~g~I~~i~~~~~~~~~~~~~id~~g~~v~PGlid~H~H~~~~~~~~~~~~~~~~~ 80 (426)
T PRK09230 3 NALMTIKNARLPGKEG--LWQITIEDGKISAIEPQSEASLEAGEVLDAEGGLAIPPFIEPHIHLDTTQTAGEPNWNQSGT 80 (426)
T ss_pred CceEEEECcEEcCCCe--eEEEEEECCEEEEecCCCCCCCCCCceEeCCCCEeccceeEEEEccccceecCCCccCCCCC
Confidence 3578999999987543 369999999999999864322 3568999999999999999999997642211
Q ss_pred --------------CChhhHHH----HHHHHHcCCeeEEeccccCCC-CccHHHHHHHHHHHhccCceeeeeccccccC-
Q psy6858 88 --------------TSVDDFYH----GTKAAVAGGTTTIIDFALPRK-GESLIKTYESWRQKADEKVCCDYALHVGITW- 147 (592)
Q Consensus 88 --------------~~~d~~~~----~~~~ala~GtTti~d~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~- 147 (592)
.+.++++. ....+++.|||++.+++.+.. .....+++.+..+... ...+.++......
T Consensus 81 l~~~i~~~~~~~~~~t~ed~~~~a~~~~~e~l~~GvTtvr~~~d~~~~~~~~~~a~~~~~~~~~--~~~~~~i~a~~~~~ 158 (426)
T PRK09230 81 LFEGIERWAERKALLTHEDVKQRAWQTLKWQIANGIQHVRTHVDVSDPTLTALKAMLEVKEEVA--PWVDLQIVAFPQEG 158 (426)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCcccEEeccccCCcchhHHHHHHHHHHHhh--CcceEEEEeccCcc
Confidence 23344443 444567899999999986522 1112222222222211 1122222111110
Q ss_pred -CC-hHHHHHHHHHHHHcCCcEEEEEEeeCCCcCC--CHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCC
Q psy6858 148 -WS-DQVQQEMAELCEKHGVNSFKTFMAYKGLYML--SDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKG 223 (592)
Q Consensus 148 -~~-~~~~~~~~~lv~~~Gv~~~k~~~~~~~~~~~--~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~ 223 (592)
+. +...+.+++..+ .+...+. ..++..+.. +++.+.++++.|+++|+++.+|+........ +
T Consensus 159 ~~~~~~~~~~l~~a~~-~~~~~vg--~~p~~~~~~~~~~e~l~~~~~~A~~~g~~~~~H~~E~~~~~~---~-------- 224 (426)
T PRK09230 159 ILSYPNGEALLEEALR-LGADVVG--AIPHFEFTREYGVESLHKAFALAQKYDRLIDVHCDEIDDEQS---R-------- 224 (426)
T ss_pred ccCCccHHHHHHHHHH-cCCCEEe--CCCCccccchhHHHHHHHHHHHHHHhCCCcEEEECCCCCcch---H--------
Confidence 11 122223333333 2433222 122232222 4678999999999999999999754221110 0
Q ss_pred CCCccCCCcHHHHHHHHHHHHHHhcc--cCCCEEEEecccHH------HHHHHHHHHHHHHhcCCceeeeeecccceeec
Q psy6858 224 PEGHQLSRPEEVEAEAVTRACTIANQ--VDCPLYVVHIMSKA------AGDAMAYKRKELMKKGKHCTLYGETLAAAVGT 295 (592)
Q Consensus 224 p~~~~~s~p~~~e~eav~~~i~la~~--~~~pl~i~hv~s~~------a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~ 295 (592)
.....+++... .+-++.+.|+..-. ..+.++.+++. |+. .++++..+.++..
T Consensus 225 ---------------~~~~~~~~~~~~gl~~~v~~~H~~~l~~~~~~~~~~~~~~La~~----gv~-vv~cP~sn~~l~~ 284 (426)
T PRK09230 225 ---------------FVETVAALAHREGMGARVTASHTTAMHSYNGAYTSRLFRLLKMS----GIN-FVANPLVNIHLQG 284 (426)
T ss_pred ---------------HHHHHHHHHHHhCCCCCEEEEecCchhcCCHHHHHHHHHHHHHc----CCe-EEECcchhhhhcC
Confidence 00111222222 34467788877652 45567777776 871 3445555444431
Q ss_pred CCCCCCCcccccccceecCCCCCCCCCHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHH
Q psy6858 296 HANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIW 375 (592)
Q Consensus 296 d~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~ 375 (592)
....+ |.+ .....+.++++.|+.+++|||+.. + .| -|.|...+-..+...+
T Consensus 285 ~~~~~--------------p~~---~g~~pi~~l~~aGv~V~lGTD~~~-d---------~~--~~~~~~d~~~~~~~~~ 335 (426)
T PRK09230 285 RFDTY--------------PKR---RGITRVKEMLEAGINVCFGHDDVF-D---------PW--YPLGTANMLQVLHMGL 335 (426)
T ss_pred CCCCC--------------CCC---CCCcCHHHHHHCCCeEEEecCCCC-C---------CC--cCCCCCCHHHHHHHHH
Confidence 11111 111 122335589999999999999742 1 12 1223222222222221
Q ss_pred --HhhccCCCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEeeeee
Q psy6858 376 --EKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPE 453 (592)
Q Consensus 376 --~~~v~~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~ 453 (592)
.++.... ++.++++|+|.|+|++||+.+ .| |++|+.||||+||.+.+..+. ..+..+.
T Consensus 336 ~~~~~~~~~--~~~~~l~maT~~gA~alg~~~-~g-le~G~~ADlv~~~~~~~~~~~----------------~~~~~~~ 395 (426)
T PRK09230 336 HVCQLMGYG--QINDGLNLITTHSARTLNLQD-YG-IEVGNPANLIILPAENGFDAV----------------RRQVPVR 395 (426)
T ss_pred HHHhhCChh--hHHHHHHHHhcchhHHhCCCC-cC-CCCCCcCCEEEEeCCCHHHHH----------------hccCCce
Confidence 1111111 367999999999999999964 78 999999999999975332221 1133568
Q ss_pred EEEECCEEEEEC
Q psy6858 454 YVIVGGRVCVDE 465 (592)
Q Consensus 454 ~Viv~GkvV~~~ 465 (592)
.|+++|++|+..
T Consensus 396 ~v~~~G~~v~~~ 407 (426)
T PRK09230 396 YSIRHGKVIAET 407 (426)
T ss_pred EEEECCEEEecc
Confidence 999999999865
No 77
>PRK07213 chlorohydrolase; Provisional
Probab=99.96 E-value=2.8e-27 Score=251.33 Aligned_cols=339 Identities=20% Similarity=0.236 Sum_probs=203.1
Q ss_pred EEEEccEEEcCCC--ceeeEEEEECCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCcccccC-------------
Q psy6858 21 LLIKNGKVVNADK--ISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELELM------------- 85 (592)
Q Consensus 21 llIkng~Iv~~d~--~~~~dV~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~------------- 85 (592)
++|+|++|++++. ..+++|+|+||+|.+|++.. .+.++||++|++| |||||+|+|+.....
T Consensus 2 ~li~~~~v~~~~~~~~~~~~v~i~~g~I~~i~~~~---~~~~~id~~g~~v-PGlvd~H~H~~~~~~rg~~~~~~l~~~~ 77 (375)
T PRK07213 2 LVYLNGNFLYGEDFEPKKGNLVIEDGIIKGFTNEV---HEGNVIDAKGLVI-PPLINAHTHIGDSSIKDIGIGKSLDELV 77 (375)
T ss_pred EEEEeeEEEeCCCCceeeeEEEEECCEEEEeccCC---CCCeEEeCCCCEe-cceeeeccccCchhhhcCCCCCCHHHHc
Confidence 6899999998754 35788999999999999752 3568999999999 999999999965321
Q ss_pred -----------CCCChhhHHHH----HHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccccccCCCh
Q psy6858 86 -----------GATSVDDFYHG----TKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVGITWWSD 150 (592)
Q Consensus 86 -----------~~~~~d~~~~~----~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (592)
...+.++.+.+ +..+++.||||+.|+... +....+++.+.......+.. -++... ....+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~D~~~~--~~~~~~~~~~a~~~~~~r~~-~~~~~~--~~~~~ 152 (375)
T PRK07213 78 KPPNGLKHKFLNSCSDKELVEGMKEGLYDMYNNGIKAFCDFREG--GIKGINLLKKASSDLPIKPI-ILGRPT--EADEN 152 (375)
T ss_pred cCCCcchHHHHhcCCHHHHHHHHHHHHHHHHHcCCeEEEEhhhc--ChhHHHHHHHHHHcCCCceE-EecCCC--cccch
Confidence 11233455443 345578999999997321 21222232222111111111 011111 11112
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCC
Q psy6858 151 QVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLS 230 (592)
Q Consensus 151 ~~~~~~~~lv~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s 230 (592)
...+.++.+++. ... ++.++...++++++.++++.|+++|.++++|+....... .......|..
T Consensus 153 ~~~~~~~~~~~~--~~g----~~~~~~~~~s~~~l~~~~~~A~~~g~~v~~H~~e~~~e~--~~~~~~~G~~-------- 216 (375)
T PRK07213 153 ELKKEIREILKN--SDG----IGLSGANEYSDEELKFICKECKREKKIFSIHAAEHKGSV--EYSLEKYGMT-------- 216 (375)
T ss_pred hhHHHHHHHHHh--ccc----ccccccccCCHHHHHHHHHHHHHcCCEEEEeeCCchhHH--HHHHHHcCCC--------
Confidence 233334433331 111 234455678899999999999999999999985432111 1111111211
Q ss_pred CcHHHHHHHHHHHHHHhcccCCC-EEEEecccHHHHHHHHHHHHHHHhcCCceee-eeecccceeecCCCCCCCcccccc
Q psy6858 231 RPEEVEAEAVTRACTIANQVDCP-LYVVHIMSKAAGDAMAYKRKELMKKGKHCTL-YGETLAAAVGTHANQIPCTWHDQA 308 (592)
Q Consensus 231 ~p~~~e~eav~~~i~la~~~~~p-l~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v-~~e~~~~~l~~d~~~~~~~~~~~~ 308 (592)
.+.++.. .|+. -.+.|+..-.. +.++.+++. |+ .+ +++.....+.
T Consensus 217 --------~v~~~~~----~G~~~~~i~H~~~~~~-~~i~~la~~----g~--~v~~~P~sn~~l~-------------- 263 (375)
T PRK07213 217 --------EIERLIN----LGFKPDFIVHATHPSN-DDLELLKEN----NI--PVVVCPRANASFN-------------- 263 (375)
T ss_pred --------hHHHHHh----cCCCCCEEEECCCCCH-HHHHHHHHc----CC--cEEECCcchhhhc--------------
Confidence 1112222 2221 13566654332 235555555 76 32 2332222110
Q ss_pred cceecCCCCCCCCCHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHH
Q psy6858 309 AHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEK 388 (592)
Q Consensus 309 ~~~~~pplr~~~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e 388 (592)
...+ .+.++++.|+.+++|||..+++.. .++ -|.++.. ...++++.+
T Consensus 264 --~g~~----------~v~~l~~~Gv~v~lGTD~~~~~~~-~~~--------------~e~~~~~------~~~~~~~~~ 310 (375)
T PRK07213 264 --VGLP----------PLNEMLEKGILLGIGTDNFMANSP-SIF--------------REMEFIY------KLYHIEPKE 310 (375)
T ss_pred --cCCc----------cHHHHHHCCCEEEEeeCCCCCchH-hHH--------------HHHHHHH------HHhCcCHHH
Confidence 0112 244799999999999998654321 111 0333321 123689999
Q ss_pred HHHHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEee---eeeEEEECCEE
Q psy6858 389 FVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHG---VPEYVIVGGRV 461 (592)
Q Consensus 389 ~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g---~~~~Viv~Gkv 461 (592)
+++++|.|+|++||+. +.|+|++|+.||||+||.+... ...+|+..+..++ .+..|+++||+
T Consensus 311 ~l~~aT~~gA~~lg~~-~~G~l~~G~~ADlvv~d~~~~~----------p~~dp~~~lV~~~~~~~v~~v~v~G~~ 375 (375)
T PRK07213 311 ILKMATINGAKILGLI-NVGLIEEGFKADFTFIKPTNIK----------FSKNPYASIITRCESGDIVNKILKGKL 375 (375)
T ss_pred HHHHHHHHHHHHhCCC-CcCCcCCCCcccEEEEcCcccc----------ccCCchHHHhhhccCCCceEEEECCcC
Confidence 9999999999999995 5899999999999999975211 2256777776654 68999999984
No 78
>PRK10027 cryptic adenine deaminase; Provisional
Probab=99.96 E-value=5.7e-27 Score=257.71 Aligned_cols=331 Identities=19% Similarity=0.168 Sum_probs=216.4
Q ss_pred ccccEEEEccEEEcC--CCceeeEEEEECCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCcccccCCCCChhhHH
Q psy6858 17 SQNRLLIKNGKVVNA--DKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELELMGATSVDDFY 94 (592)
Q Consensus 17 ~~~~llIkng~Iv~~--d~~~~~dV~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~~~~~d~~~ 94 (592)
...+++|+|++|++. .....++|+|+||+|.+|++......+.++||++|++|+|||||+|+|+..+. .++++|
T Consensus 28 ~~~dllI~ng~vv~~~~~~~~~~~V~I~~GrI~~Vg~~~~~~~~~~vIDa~G~~v~PGlIDaHvHiess~---~~p~~~- 103 (588)
T PRK10027 28 AVADYIIDNVSILDLINGGEISGPIVIKGRYIAGVGAEYADAPALQRIDARGATAVPGFIDAHLHIESSM---MTPVTF- 103 (588)
T ss_pred CCCCEEEECcEEEeCCCCcEEeeEEEEECCEEEEeCCCCCCCCCCeEEECCCCEEEECeEeccccCCccc---CCHhHH-
Confidence 457899999999985 34457899999999999986533223568999999999999999999998764 356777
Q ss_pred HHHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhc-cCceeeeeccccccC---CCh----HHHHHHHHHHHHcCCc
Q psy6858 95 HGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKAD-EKVCCDYALHVGITW---WSD----QVQQEMAELCEKHGVN 166 (592)
Q Consensus 95 ~~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~---~~~----~~~~~~~~lv~~~Gv~ 166 (592)
.++++.+||||+++...........+.++...+.+. ......+.+...++. +.. -..++++++.++.++.
T Consensus 104 --a~aal~~G~TtVv~dPhei~nv~g~~gi~~~l~~a~~~p~~~~~~~ps~vpa~~~~Et~Ga~~~~~~~~~~l~~~~v~ 181 (588)
T PRK10027 104 --ETATLPRGLTTVICDPHEIVNVMGEAGFAWFARCAEQARQNQYLQVSSCVPALEGCDVNGASFTLEQMLAWRDHPQVT 181 (588)
T ss_pred --HHHHHhCceEEEEcCCCCcccCCCHHHHHHHHHHhhhCCCeeEEeecccCcCCcccccCCCcCCHHHHHHHhcCCCce
Confidence 446899999999986543222222222222222222 112222222222222 111 1467888888888999
Q ss_pred EEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHH
Q psy6858 167 SFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTI 246 (592)
Q Consensus 167 ~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~l 246 (592)
++...|.|.+.....++.+.++... .+..+..|+..-. ......++..|+.. -|+...++++.
T Consensus 182 glgEvMn~~~V~~~d~~~~~ki~~~---~~~~idGH~p~l~--g~~L~ay~aaGi~s--DHE~~t~eea~---------- 244 (588)
T PRK10027 182 GLAEMMDYPGVISGQNALLDKLDAF---RHLTLDGHCPGLG--GKELNAYIAAGIEN--CHESYQLEEGR---------- 244 (588)
T ss_pred eEEeccCccccccCCHHHHHHHHHh---CCCceECCCCCCC--hHHHHHHHHcCCCC--CcccCCHHHHH----------
Confidence 9999999999887777777777733 7899999986532 34455666777765 34444333221
Q ss_pred hcccCCCEEEEecccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCcccccccceecCCCCCCCCCHHHH
Q psy6858 247 ANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHL 326 (592)
Q Consensus 247 a~~~~~pl~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr~~~~~~~~l 326 (592)
+++| . |+ .|.. ..... ..+.+.|
T Consensus 245 ----------------------eklr-~----Gm--~v~i---------RegS~-------------------~~nl~~l 267 (588)
T PRK10027 245 ----------------------RKLQ-L----GM--SLMI---------REGSA-------------------ARNLNAL 267 (588)
T ss_pred ----------------------HHHH-C----CC--EEEE---------eCCcc-------------------ccCHHHH
Confidence 1221 1 55 2210 00000 1122333
Q ss_pred HHHHhcC--CceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHHHcCCC
Q psy6858 327 LTLLNEN--ALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLY 404 (592)
Q Consensus 327 ~~~l~~G--~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~lgl~ 404 (592)
..++..- ..+++.||......-.+ +..+...+.+++...++++.++++++|.|||++||+.
T Consensus 268 ~~~~~~~~~~~~~l~TDd~~~~~l~~-----------------~Ghi~~~vr~av~~~Gi~~~~Ai~mAT~nPA~~lgl~ 330 (588)
T PRK10027 268 APLINEFNSPQCMLCTDDRNPWEIAH-----------------EGHIDALIRRLIEQHNVPLHVAYRVASWSTARHFGLN 330 (588)
T ss_pred HHHhhccCCCeEEEEcCCCChHHHHh-----------------ccCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCC
Confidence 3333221 35678888754222111 3345566667777788999999999999999999995
Q ss_pred CCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEEECCEEEEECCeee
Q psy6858 405 PKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLR 469 (592)
Q Consensus 405 ~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv~GkvV~~~g~l~ 469 (592)
++|+|++|+.||||+||..... .+..||++|++|+++ ++.
T Consensus 331 -d~G~IapG~~ADlvvld~l~~~-----------------------~v~~v~~~G~~v~~~-~~~ 370 (588)
T PRK10027 331 -HLGLLAPGKQADIVLLSDARKV-----------------------TVQQVLVKGEPIDAQ-TLQ 370 (588)
T ss_pred -CCcccCCCCcCCEEEEccCCCc-----------------------eEEEEEECCEEeecc-ccc
Confidence 6899999999999999954111 357899999999998 654
No 79
>COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=99.96 E-value=1.2e-27 Score=258.85 Aligned_cols=365 Identities=21% Similarity=0.243 Sum_probs=226.7
Q ss_pred cccEEEEccEEEcCCC--ceeeEEEEECCEEEEeecCCCC----CCCCeEEecCCCEEeeCccccCcCccc---cc----
Q psy6858 18 QNRLLIKNGKVVNADK--ISDLDIYIENGVIQQLGRNLIV----PGGVRVIDAAGSYVIPGGIDPHTHFEL---EL---- 84 (592)
Q Consensus 18 ~~~llIkng~Iv~~d~--~~~~dV~I~dG~I~~Ig~~~~~----~~~~~vIDa~G~~V~PG~ID~HtH~~~---~~---- 84 (592)
.+++++.||+|++.+. ..-..|+|+||+|++||.+.+. ...+++||++|++|||||||+|+|+-. ..
T Consensus 4 ~adlil~nG~i~T~~~~~p~aeAvaI~dGrI~avG~~~~~~~~~~~~t~viDL~Gk~v~PGfvDaH~Hl~~~G~~~~~~~ 83 (535)
T COG1574 4 AADLILHNGRIYTMDEARPTAEAVAIKDGRIVAVGSDAELKALAGPATEVIDLKGKFVLPGFVDAHLHLISGGLSLLELN 83 (535)
T ss_pred ccceeEECCEEEeccCCCcceeEEEEcCCEEEEEcChHHHHhhcCCCceEEeCCCCEeccccchhhHHHHHhhhhhhccc
Confidence 5789999999999874 4567899999999999986322 247899999999999999999999822 00
Q ss_pred ----------------------------------------------------------C---------------------
Q psy6858 85 ----------------------------------------------------------M--------------------- 85 (592)
Q Consensus 85 ----------------------------------------------------------~--------------------- 85 (592)
.
T Consensus 84 ~~~~~~~~~~~~~i~~~a~~~~~~~w~~~vG~g~~~~~~~~~~~t~~~lD~~~~~~Pv~l~r~~~H~a~~Ns~aL~~~Gi 163 (535)
T COG1574 84 LDGVRSLDDLLAALRRQAARTPPGQWVVVVGWGWDEQFWEERLPTLAELDAAAPDHPVLLIRLDGHVAVANSAALRLAGI 163 (535)
T ss_pred ccccCCHHHHHHHHHHHHHhCCCCCceEEEEcChhhhccccCCCcHHHhhccCCCCCEEEEeccChHHHHhHHHHHHcCC
Confidence 0
Q ss_pred ------------------------------------CCCChhhHHH-----HHHHHHcCCeeEEeccccCCCCccHHHHH
Q psy6858 86 ------------------------------------GATSVDDFYH-----GTKAAVAGGTTTIIDFALPRKGESLIKTY 124 (592)
Q Consensus 86 ------------------------------------~~~~~d~~~~-----~~~~ala~GtTti~d~~~~~~~~~~~~a~ 124 (592)
.....+..+. +.+.+.+.|+|++.|+.. . ......+
T Consensus 164 ~~~t~~p~gg~~~~d~~g~ptG~L~e~a~~~~~~~~~~~~~~~~~~~~~~~a~~~l~s~GiT~v~d~~~-~--~~~~~~~ 240 (535)
T COG1574 164 TRDTPDPPGGIIGRDADGEPTGLLLENAQALVARLAPPPSPAEELEAAAARAARELNSLGITGVHDMAG-Y--QGYYADY 240 (535)
T ss_pred CCCCCCCCCCcccccCCCCCCeeehHhhHHHHHHhcCCCCchHHHHHHHHHHHHHHHhcCCeEEEcccc-c--ccchhHH
Confidence 0000111111 233456799999999875 2 1233333
Q ss_pred HHHHHHhcc---CceeeeeccccccCCChHHHHHHHHHHHHcC------CcEEEEEEe-------------e---C---C
Q psy6858 125 ESWRQKADE---KVCCDYALHVGITWWSDQVQQEMAELCEKHG------VNSFKTFMA-------------Y---K---G 176 (592)
Q Consensus 125 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~G------v~~~k~~~~-------------~---~---~ 176 (592)
..++..... ...+.+.++.. ... ++........+ ...+|.|+. | . +
T Consensus 241 ~~~r~~~~~~~l~~rv~~~l~~~--~~~----~~~~~~~~~~~~~~~~~~g~~K~f~Dgslg~rtA~l~~~y~d~~~~~G 314 (535)
T COG1574 241 EAYRALAAGGELPVRVALLLFTE--DLK----EERLDLLRQTGAKGLLQGGGVKLFADGSLGERTALLAAPYADGPGPSG 314 (535)
T ss_pred HHHHHHHhcCcceEEEEeecccc--chh----hHHHhhcccCCccceeecCceEEEEeCCCCcchhhccCcccCCCCCCC
Confidence 333333332 22233333221 111 11122211111 123334432 1 1 3
Q ss_pred CcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCEEE
Q psy6858 177 LYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYV 256 (592)
Q Consensus 177 ~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~i 256 (592)
...+++++|.++++.|.++|+++.+|+-.+..+.... ++.+++..-....+++..|
T Consensus 315 ~~l~~~e~l~~~v~~a~~~gl~v~vHAiGD~Av~~~L------------------------dafE~~~~~~~~~~~r~ri 370 (535)
T COG1574 315 ELLLTEEELEELVRAADERGLPVAVHAIGDGAVDAAL------------------------DAFEKARKKNGLKGLRHRI 370 (535)
T ss_pred CcccCHHHHHHHHHHHHHCCCcEEEEEechHHHHHHH------------------------HHHHHHhhhcCCccCCcee
Confidence 4467899999999999999999999998865444332 3333333222234678888
Q ss_pred EecccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCcccccccceecCCCCCCCCCHHHHHHHHhcCCce
Q psy6858 257 VHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQ 336 (592)
Q Consensus 257 ~hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~ 336 (592)
.|+.--. .+.|+++++. |+ ...+.+.++..++..+.. .........++|++ .+++.|..+
T Consensus 371 eH~~~v~-~~~i~R~~~L----gv----~~svQP~f~~~~~~~~~~-rlG~~r~~~~~p~~----------~ll~~G~~l 430 (535)
T COG1574 371 EHAELVS-PDQIERFAKL----GV----IASVQPNFLFSDGEWYVD-RLGEERASRSYPFR----------SLLKAGVPL 430 (535)
T ss_pred eeeeecC-HhHHHHHHhc----Cc----eEeeccccccccchHHHH-hhhhhhhhccCcHH----------HHHHCCCeE
Confidence 8887543 3445666655 44 555566665555421111 11112233445555 799999999
Q ss_pred EEeCCC--CCCChhh---hhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHHHcCCCCCCcccc
Q psy6858 337 TTGSDN--CTFNKNQ---KELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIA 411 (592)
Q Consensus 337 ~~gsD~--~~~~~~~---~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~ 411 (592)
+.|||. ++++... -+.. .+.+.|... . ....+|..++|++.|.|+|.+.+.+.++|+|+
T Consensus 431 a~gSD~Pv~~~dP~~~i~~AVt----r~~~~g~~~-----------~-~~~~L~~~eAL~~yT~~~A~a~~~e~~~G~Le 494 (535)
T COG1574 431 AGGSDAPVEPYDPWLGIYAAVT----RKTPGGRVL-----------G-PEERLTREEALRAYTEGGAYASGAEGEKGSLE 494 (535)
T ss_pred eccCCCCCCCCChHHHHHHHHc----CCCCCCCCC-----------c-cccccCHHHHHHHHhhhhHHhhhccccccccc
Confidence 999998 3433221 1110 001111000 0 01168999999999999999999999999999
Q ss_pred CCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEEECCEEEEEC
Q psy6858 412 EGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDE 465 (592)
Q Consensus 412 ~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv~GkvV~~~ 465 (592)
+|+.|||+|||.+ .++++.+.++.. +|..||++||+||+.
T Consensus 495 ~G~~AD~~Vld~d-~f~~~~~~i~~~-------------~v~~T~~~Gk~VY~~ 534 (535)
T COG1574 495 PGKLADFAVLDRD-PFTVDPDSIKDT-------------KVVLTIVAGKVVYRA 534 (535)
T ss_pred cCceeeEEEecCC-cccCChHHhccc-------------eEEEEEEcCeEeecC
Confidence 9999999999987 566655544433 889999999999974
No 80
>cd01303 GDEase Guanine deaminase (GDEase). Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool.
Probab=99.96 E-value=5.9e-27 Score=253.04 Aligned_cols=355 Identities=17% Similarity=0.101 Sum_probs=207.1
Q ss_pred eeEEEEECCEEEEeecCCC----CCCCCeEEecCCCEEeeCccccCcCcccccC-CC---------------------CC
Q psy6858 36 DLDIYIENGVIQQLGRNLI----VPGGVRVIDAAGSYVIPGGIDPHTHFELELM-GA---------------------TS 89 (592)
Q Consensus 36 ~~dV~I~dG~I~~Ig~~~~----~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~-~~---------------------~~ 89 (592)
+++|+|+||+|++||+... .+.+.++||++|++|||||||+|+|+.+... +. .+
T Consensus 26 ~g~V~v~~g~I~~vG~~~~~~~~~~~~~~viD~~g~~v~PGlVn~H~Hl~~~~~rg~~~~~~l~~wl~~~~~~~e~~~~~ 105 (429)
T cd01303 26 DGLIVVVDGNIIAAGAAETLKRAAKPGARVIDSPNQFILPGFIDTHIHAPQYANIGSGLGEPLLDWLETYTFPEEAKFAD 105 (429)
T ss_pred CeEEEEECCEEEEeCchhhhhhhcCCCceEEcCCCCEEecceeeeeecccccccccccCCCcHHHHHHhhhhHHHHhcCC
Confidence 6899999999999998432 2346789999999999999999999864321 10 11
Q ss_pred hhhHH----HHHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccc-cccC-C---ChHHHHHHHHHH
Q psy6858 90 VDDFY----HGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHV-GITW-W---SDQVQQEMAELC 160 (592)
Q Consensus 90 ~d~~~----~~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~-~---~~~~~~~~~~lv 160 (592)
.++.+ .+...++++||||++|+..... ......++..... ..+.+..+.... ..+. + ..+..++..+++
T Consensus 106 ~~~~~~~a~~~~~e~l~~GvTtv~d~~~~~~-~~~~~~~~a~~~~-G~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 183 (429)
T cd01303 106 PAYAREVYGRFLDELLRNGTTTACYFATIHP-ESTEALFEEAAKR-GQRAIAGKVCMDRNAPEYYRDTAESSYRDTKRLI 183 (429)
T ss_pred HHHHHHHHHHHHHHHHhCCceEEEeecccCh-hHHHHHHHHHHHh-CCeEEEeeeeecCCCCcccccCHHHHHHHHHHHH
Confidence 22222 2334568899999998864321 1122222222222 223333222211 0111 1 111233344444
Q ss_pred HH-cCC-cEEEEEEeeCCCcCCCHHHHHHHHHHHHHcC-CeEEEecCchhhhHHHHHHHHH-cCCCCCCCccCCCcHHHH
Q psy6858 161 EK-HGV-NSFKTFMAYKGLYMLSDGELYDAFSAIKNLG-AIAMVHAENGEIIDKNTQKLLA-AGIKGPEGHQLSRPEEVE 236 (592)
Q Consensus 161 ~~-~Gv-~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g-~~~~vHae~~~~i~~~~~~~~~-~G~~~p~~~~~s~p~~~e 236 (592)
+. .+. ..+...++++..+.++++.+.++++.|+++| .++++|+..... ....+.+ .|- ..+|.+
T Consensus 184 ~~~~~~~~~v~~~~~p~~~~~~s~e~l~~~~~~A~~~g~~~v~~H~~e~~~---e~~~~~~~~g~-------~~~p~~-- 251 (429)
T cd01303 184 ERWHGKSGRVKPAITPRFAPSCSEELLAALGKLAKEHPDLHIQTHISENLD---EIAWVKELFPG-------ARDYLD-- 251 (429)
T ss_pred HHHhCcCCceEEEEecCcCCcCCHHHHHHHHHHHHHCCCCeEEEeeCCCHH---HHHHHHHHcCC-------CCCHHH--
Confidence 33 221 3466677788888899999999999999999 999999744221 1111111 110 001111
Q ss_pred HHHHHHHHHHhcccCCCEEEEecccHHHHHHHHHHHHHHHhcCCceee-eeecccceeecCCCCCCCcccccccceecCC
Q psy6858 237 AEAVTRACTIANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTL-YGETLAAAVGTHANQIPCTWHDQAAHVLSPP 315 (592)
Q Consensus 237 ~eav~~~i~la~~~~~pl~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v-~~e~~~~~l~~d~~~~~~~~~~~~~~~~~pp 315 (592)
.+.-....+.++.+.|+..-.. +.++.+++. |+ .| ++......+. ...+|
T Consensus 252 ------~l~~~G~l~~~~~l~H~~~l~~-~~~~~l~~~----g~--~v~~~P~sn~~l~----------------~g~~~ 302 (429)
T cd01303 252 ------VYDKYGLLTEKTVLAHCVHLSE-EEFNLLKER----GA--SVAHCPTSNLFLG----------------SGLFD 302 (429)
T ss_pred ------HHHHCCCCCCCcEEEeCCCCCH-HHHHHHHHc----CC--EEEECccchhhhc----------------cCCCC
Confidence 1111122345677778774432 335556666 77 43 2332211110 01123
Q ss_pred CCCCCCCHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhc-----cCCCCCHHHHH
Q psy6858 316 LRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGV-----VPGILSPEKFV 390 (592)
Q Consensus 316 lr~~~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v-----~~~~l~~~e~v 390 (592)
+.++++.|+.+++|||....+.. .. |. +.++...+.+.. ....+++.+++
T Consensus 303 ----------~~~~~~~Gv~v~lGtD~~~~~~~-d~-----~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~al 357 (429)
T cd01303 303 ----------VRKLLDAGIKVGLGTDVGGGTSF-SM-----LD---------TLRQAYKVSRLLGYELGGHAKLSPAEAF 357 (429)
T ss_pred ----------HHHHHHCCCeEEEeccCCCCCCc-cH-----HH---------HHHHHHHHHHhhccccCCcCCCCHHHHH
Confidence 34799999999999998543211 11 11 334444343322 23458999999
Q ss_pred HHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEe-cCCcccccCCCCcccCeEEee---eeeEEEECC
Q psy6858 391 AVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTI-SAKTHAHACDYNIFEGLVCHG---VPEYVIVGG 459 (592)
Q Consensus 391 ~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i-~~~~~~~~~~~~~~~g~~~~g---~~~~Viv~G 459 (592)
+++|.|+|+++|+++++|+|++||.|||||+|.+.+... +..+.. ...++|+..+.+++ .|..|||+|
T Consensus 358 ~~aT~~gA~~lg~~~~~Gsle~Gk~ADlvvld~~~~~~~~p~~~~~-~~~~d~~~~lV~~~~~~~V~~v~V~G 429 (429)
T cd01303 358 YLATLGGAEALGLDDKIGNFEVGKEFDAVVIDPSATPLLADRMFRV-ESLEEALFKFLYLGDDRNIREVYVAG 429 (429)
T ss_pred HHHhhHHHHHcCCCCCCcCcCCCCccCEEEEcCCCccccccccccc-cchhhHHHHHeeeCCCCCeeEEEeCC
Confidence 999999999999988899999999999999998854222 210000 01146776666665 588999998
No 81
>TIGR02022 hutF formiminoglutamate deiminase. In some species, histidine utilization goes via urocanate to glutamate in four step, the last being removal of formamide. This model describes an alternate fourth step, formiminoglutamate hydrolase, which leads to N-formyl-L-glutamate. This product may be acted on by formylglutamate amidohydrolase (TIGR02017) and bypass glutamate as a product during its degradation. Alternatively, removal of formate (by EC 3.5.1.68) would yield glutamate.
Probab=99.96 E-value=2.4e-27 Score=257.76 Aligned_cols=369 Identities=15% Similarity=0.139 Sum_probs=209.6
Q ss_pred EEEEccEEEcCCCceeeEEEEE-CCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCcccccC--------------
Q psy6858 21 LLIKNGKVVNADKISDLDIYIE-NGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELELM-------------- 85 (592)
Q Consensus 21 llIkng~Iv~~d~~~~~dV~I~-dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~-------------- 85 (592)
+.++|+.+-++ ....++|+|+ ||+|++||+....+.+ ++..|++|||||||+|+|+.+.++
T Consensus 4 ~~~~~~~~~~~-~~~~~~i~I~~~g~I~~vg~~~~~~~~---~~~~g~lvlPGfVn~H~H~~~~~~rg~~~~~~~~~~~l 79 (455)
T TIGR02022 4 YWAERALLPDG-WAEGVRIAVAADGRILAIETGVPAAPG---AERLSGPLLPGLANLHSHAFQRAMAGLAEVAGSGGDSF 79 (455)
T ss_pred hhHHhccCCCc-cccCceEEEecCCEEEEecCCCCcccc---cccCCCEEccCCcccCcchhhHhhcCCcccccCCCCCH
Confidence 45677777443 2346899999 9999999986543222 345689999999999999954211
Q ss_pred -----------CCCChhhHHHHH----HHHHcCCeeEEeccccCCC---C---c---c-HHHHHHHHHHHhccCceeeee
Q psy6858 86 -----------GATSVDDFYHGT----KAAVAGGTTTIIDFALPRK---G---E---S-LIKTYESWRQKADEKVCCDYA 140 (592)
Q Consensus 86 -----------~~~~~d~~~~~~----~~ala~GtTti~d~~~~~~---~---~---~-~~~a~~~~~~~~~~~~~~~~~ 140 (592)
...++++++.++ ..++++||||+.|+..... + . . ....++...+.. .+......
T Consensus 80 ~~w~~~~~~~~~~~t~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~~~~~~~~a~~~a~~e~G-~R~~~~~~ 158 (455)
T TIGR02022 80 WTWRELMYRFVDRLTPEQLQAIARQLYVEMLEAGFTRVGEFHYLHHAPDGTPYADPAEMAERIAAAAADAG-IGLTLLPV 158 (455)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCEEEeeeeecccCCCccccchhhhHHHHHHHHHHhC-CeEEeeee
Confidence 123445555444 3457899999999753211 0 0 1 112222222221 12211111
Q ss_pred c--ccc---ccCC---------ChHHHHHHHHHHHH-cCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCc
Q psy6858 141 L--HVG---ITWW---------SDQVQQEMAELCEK-HGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAEN 205 (592)
Q Consensus 141 ~--~~~---~~~~---------~~~~~~~~~~lv~~-~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~ 205 (592)
+ +.. .+.+ .+...+.++.+.+. .+...+...++++..+.++++.+.++++ ++++|+++++|+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~s~e~l~~~~~-a~~~g~~v~~H~~e 237 (455)
T TIGR02022 159 FYAHSGFGGAAPNPGQRRFIHDVERFARLVEVLRRELAAQPAAVLGLAPHSLRAVTPEQLAAVLQ-ASDRQAPVHIHVAE 237 (455)
T ss_pred eeecCCCCCCCCcccchhhccCHHHHHHHHHHHHHHhccCCceEEEEecCCCCcCCHHHHHHHHH-HHhCCCceEEEECC
Confidence 1 110 1111 01122223333221 1223466667788888899999999999 88999999999843
Q ss_pred hhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCEEEEecccHHHHHHHHHHHHHHHhcCCceee-
Q psy6858 206 GEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTL- 284 (592)
Q Consensus 206 ~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v- 284 (592)
.. .+........|.. | + +. +.-....+-++.+.|+..-.. +.++.+++. |. .+
T Consensus 238 ~~--~e~~~~~~~~G~~---------~--v--~~----l~~~g~l~~~~~~~H~~~l~~-~d~~~la~~----g~--~v~ 291 (455)
T TIGR02022 238 QQ--KEVDDCLAWSGRR---------P--V--EW----LLDHGPVDARWCLVHATHLTD-EETALLARS----GA--VAG 291 (455)
T ss_pred Ch--HHHHHHHHHhCCC---------H--H--HH----HHHcCCCCCCEEEEEeecCCH-HHHHHHHHc----CC--eEE
Confidence 21 1111111112221 1 1 11 111122455566666653332 234555555 76 32
Q ss_pred eeecccceeecCCCCCCCcccccccceecCCCCCCCCCHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCC
Q psy6858 285 YGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGV 364 (592)
Q Consensus 285 ~~e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~ 364 (592)
++......++ ...+| +.++++.|+.+++|||...... .|.
T Consensus 292 ~~P~sn~~lg----------------~g~~p----------i~~l~~~Gv~v~lGTD~~~~~d--------~~~------ 331 (455)
T TIGR02022 292 LCPTTEANLG----------------DGIFP----------AVDFVAAGGRFGIGSDSHVVID--------VAE------ 331 (455)
T ss_pred EChhhhcccc----------------CCCCC----------HHHHHHCCCeEEEECCCCCCCC--------HHH------
Confidence 2222211110 01133 3479999999999999633111 111
Q ss_pred cchhhHHHHHHHhhc---------cCCCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCccc
Q psy6858 365 NGVQDRLSVIWEKGV---------VPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHA 435 (592)
Q Consensus 365 ~g~e~~~~~~~~~~v---------~~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~ 435 (592)
+.++...+++.. ....+++.++++++|.|+|++||+ + +|+|++||.|||||||.+.+...+..
T Consensus 332 ---~m~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~gAralg~-~-~GsLe~Gk~ADlvvld~~~~~~~~~~--- 403 (455)
T TIGR02022 332 ---ELRQLEYGQRLRDRARNVLAAGPGPSVGRALYDAALLGGAQALGL-A-TGGLRAGARADFLTLDGDHPYLAGAL--- 403 (455)
T ss_pred ---HHHHHHHHHHHHhcccccccCCcccchHHHHHHHHHHHHHHHhCC-C-CCccCCCCCcCEEEEeCCCcccCCCC---
Confidence 344444443321 123567889999999999999999 3 89999999999999998854433210
Q ss_pred ccCCCCcccCeEEe---eeeeEEEECCEEEEECCeeeecC
Q psy6858 436 HACDYNIFEGLVCH---GVPEYVIVGGRVCVDEGNLRVAQ 472 (592)
Q Consensus 436 ~~~~~~~~~g~~~~---g~~~~Viv~GkvV~~~g~l~~~~ 472 (592)
..+|+..+... ..|..||++||+||+||+++..+
T Consensus 404 ---~~~~~~~lv~~~~~~~V~~v~V~G~~v~~~g~~~~~~ 440 (455)
T TIGR02022 404 ---GDSLLDRWLFAGGGAAVRDVWVGGRWVVRDGRHALRE 440 (455)
T ss_pred ---chhHHHHHhhcCCCCCccEEEECCEEEEECCccccHH
Confidence 12333333332 36889999999999999996543
No 82
>PRK09229 N-formimino-L-glutamate deiminase; Validated
Probab=99.96 E-value=2.4e-27 Score=258.14 Aligned_cols=367 Identities=16% Similarity=0.124 Sum_probs=209.7
Q ss_pred ccEEEEccEEEcCCCceeeEEEEEC-CEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCcccccC------------
Q psy6858 19 NRLLIKNGKVVNADKISDLDIYIEN-GVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELELM------------ 85 (592)
Q Consensus 19 ~~llIkng~Iv~~d~~~~~dV~I~d-G~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~------------ 85 (592)
..|+++++.+.++ ...+++|+|+| |+|++||+.... . .++..|++|||||||+|+|+.+..+
T Consensus 3 ~~~~~~~~~~~~~-~~~~~~v~i~~~grI~~vg~~~~~-~---~~~~~g~~vlPGlVn~H~H~~~~~~rg~~~~~~~~~~ 77 (456)
T PRK09229 3 TTLFAERALLPDG-WARNVRLTVDADGRIAAVEPGAAP-A---GAERLAGPVLPGMPNLHSHAFQRAMAGLTEVRGPPQD 77 (456)
T ss_pred hhHHHHHhhCCCc-cccCcEEEEecCCeEEEecCCCCC-c---cccccCcEEccCcccccccHhhHhhcCcccccCCCCC
Confidence 3456667766544 33578999999 999999986432 1 3456999999999999999853211
Q ss_pred -------------CCCChhhHHH----HHHHHHcCCeeEEeccccCC--CC-c------cHHHHHHHHHHHhccCceeee
Q psy6858 86 -------------GATSVDDFYH----GTKAAVAGGTTTIIDFALPR--KG-E------SLIKTYESWRQKADEKVCCDY 139 (592)
Q Consensus 86 -------------~~~~~d~~~~----~~~~ala~GtTti~d~~~~~--~~-~------~~~~a~~~~~~~~~~~~~~~~ 139 (592)
...++++.+. ++..+|.+||||+.|+.... .+ . ...++..+.......+.++..
T Consensus 78 ~l~~w~~~~~~~~~~~~~e~~~~~a~~~~~e~L~~G~Ttv~d~~~~~~~~~~~~~~~~~~~~~a~~~a~~e~GiR~~~~~ 157 (456)
T PRK09229 78 SFWSWRELMYRFALRLTPDQLEAIARQLYVEMLEAGYTSVGEFHYLHHDPDGTPYADPAEMALRIVAAARAAGIGLTLLP 157 (456)
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCcEEEeeeeeccCCCCCccCChHHHHHHHHHHHHHcCCEEEece
Confidence 1123344433 33455789999999985321 11 0 111222222222222222211
Q ss_pred ec--ccc---ccCC---------ChHHHHHHHHHHHH-cCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecC
Q psy6858 140 AL--HVG---ITWW---------SDQVQQEMAELCEK-HGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAE 204 (592)
Q Consensus 140 ~~--~~~---~~~~---------~~~~~~~~~~lv~~-~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae 204 (592)
.. +.. .+.+ .+...+.++++.+. .+...+...++++..+.++++++.++++.| ++|+++++|+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~s~e~l~~~~~~A-~~g~~i~~H~~ 236 (456)
T PRK09229 158 VLYAHSGFGGQPPNPGQRRFINDPDGFLRLLEALRRALAALPGARLGLAPHSLRAVTPDQLAAVLALA-APDGPVHIHIA 236 (456)
T ss_pred eeeecCCCCCCCCchhhcccccCHHHHHHHHHHHHHhhcCCCceEEEEeCCCCCCCCHHHHHHHHHHh-cCCCceEEEeC
Confidence 11 100 0111 11122233333322 223456677788888889999999999999 99999999984
Q ss_pred c-hhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCEEEEecccHHHHHHHHHHHHHHHhcCCcee
Q psy6858 205 N-GEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCT 283 (592)
Q Consensus 205 ~-~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~i~hv~s~~a~~~i~~ar~~~~~~G~~~~ 283 (592)
+ ...+....+ ..|.. |. +.+.. ....+-++.+.|+..-... .++.+++. |+ .
T Consensus 237 e~~~e~~~~~~---~~g~~---------~~----~~l~~----~g~l~~~~~l~H~~~l~~~-d~~~la~~----g~--~ 289 (456)
T PRK09229 237 EQTKEVDDCLA---WSGAR---------PV----EWLLD----HAPVDARWCLVHATHLTDA-ETARLARS----GA--V 289 (456)
T ss_pred CCHHHHHHHHH---HcCCC---------HH----HHHHH----cCCCCCCeEEEeeccCCHH-HHHHHHHc----CC--e
Confidence 3 221111111 12221 11 11111 1234556667776643322 24555555 76 3
Q ss_pred ee-eecccceeecCCCCCCCcccccccceecCCCCCCCCCHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCC
Q psy6858 284 LY-GETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPN 362 (592)
Q Consensus 284 v~-~e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~ 362 (592)
+. +......++ ...+|+ .++++.|+.+.+|||...... .|.
T Consensus 290 v~~~P~sn~~lg----------------~g~~p~----------~~l~~~Gv~v~lGtD~~~~~d--------~~~---- 331 (456)
T PRK09229 290 AGLCPTTEANLG----------------DGIFPA----------VDYLAAGGRFGIGSDSHVSID--------LVE---- 331 (456)
T ss_pred EEECchhhhhhc----------------CCCCCH----------HHHHHCCCeEEEecCCCCCCC--------HHH----
Confidence 32 221111100 011233 478999999999999633110 111
Q ss_pred CCcchhhHHHHHHHhhcc---------CCCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCc
Q psy6858 363 GVNGVQDRLSVIWEKGVV---------PGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKT 433 (592)
Q Consensus 363 G~~g~e~~~~~~~~~~v~---------~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~ 433 (592)
+.++....++... ...++..++++++|.|+|+++|+ .+|+|++||.|||||+|.+.+...+.
T Consensus 332 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~gA~alg~--~~GsLe~Gk~ADlvvld~~~~~~~~~-- 402 (456)
T PRK09229 332 -----ELRLLEYGQRLRDRRRNVLAAAAQPSVGRRLFDAALAGGAQALGR--AIGGLAVGARADLVVLDLDHPALAGR-- 402 (456)
T ss_pred -----HHHHHHHHHHHhhcCCcccccccccchHHHHHHHHHHHHHHHhCC--CcCCcCCCCccCEEEEeCCCccccCC--
Confidence 3333333332211 13567899999999999999999 58999999999999999885322211
Q ss_pred ccccCCCCcccCeEEe---eeeeEEEECCEEEEECCeee
Q psy6858 434 HAHACDYNIFEGLVCH---GVPEYVIVGGRVCVDEGNLR 469 (592)
Q Consensus 434 ~~~~~~~~~~~g~~~~---g~~~~Viv~GkvV~~~g~l~ 469 (592)
...+|+..+... ..+..||++||+||++|++.
T Consensus 403 ----~~~~~~~~lv~~~~~~~V~~v~V~G~~v~~~g~~~ 437 (456)
T PRK09229 403 ----EGDALLDRWVFAGGDAAVRDVWVAGRWVVRDGRHR 437 (456)
T ss_pred ----ChhhHHHHHhhcCCCCCeeEEEECCEEEEECCccC
Confidence 012343333322 37889999999999999754
No 83
>PLN02599 dihydroorotase
Probab=99.96 E-value=6.8e-28 Score=251.64 Aligned_cols=295 Identities=15% Similarity=0.108 Sum_probs=224.5
Q ss_pred CEEeeCccccCcCcccccCCCCChhhHHHHHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccC--ceeeeecccc
Q psy6858 67 SYVIPGGIDPHTHFELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEK--VCCDYALHVG 144 (592)
Q Consensus 67 ~~V~PG~ID~HtH~~~~~~~~~~~d~~~~~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ 144 (592)
.+.+|---|.|+|+... ++...+.-..++|+|++++|.+..+.....+.++.+++++... ..++|++++.
T Consensus 22 ~~~~~~~~d~h~hlr~~--------~~~~~~~~~~~gg~t~~i~MPn~~Ppv~~~~~~~~~~~~~~~~~~~~vdf~~~~~ 93 (364)
T PLN02599 22 ELTITRPDDWHLHLRDG--------AKLAAVVPHSARHFGRAIVMPNLKPPVTTTARALAYRERIMKALPPGSSFEPLMT 93 (364)
T ss_pred eEEecCCcceeeEccCc--------HHHHhhhHHhcCCcCEEEECCCCCCCcCCHHHHHHHHHHHhhhcCCCcceEEEEE
Confidence 36688899999999653 3444566678899999999987666667778888888877766 5579999876
Q ss_pred ccCCChHHHHHHHHHHHHcCCc-EEEEEEeeCC---CcCCC-HHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHc
Q psy6858 145 ITWWSDQVQQEMAELCEKHGVN-SFKTFMAYKG---LYMLS-DGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAA 219 (592)
Q Consensus 145 ~~~~~~~~~~~~~~lv~~~Gv~-~~k~~~~~~~---~~~~~-~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~ 219 (592)
+........++++++ .+.|+. +||+|+...+ ...++ ++.++++++.++++|+++.+|+|+.+....
T Consensus 94 l~lt~~~~l~Ei~~~-~~~Gvv~gfKlyp~~~tt~s~~gv~d~~~l~~~le~~~e~G~~L~vH~E~~~~~~~-------- 164 (364)
T PLN02599 94 LYLTDNTTPEEIKAA-KASGVVFAVKLYPAGATTNSQAGVTDLGKCLPVLEEMAEQGMPLLVHGEVTDPSVD-------- 164 (364)
T ss_pred EecCCCCCHHHHHHH-HHCCCcEEEEECcccCcCCCccccCCHHHHHHHHHHHHhcCCEEEEecCCCccccc--------
Confidence 622222345788887 456988 9999985321 12234 589999999999999999999998543110
Q ss_pred CCCCCCCccCCCcHHHHHHHHHHHH--HHhcccCCCEEEEecccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCC
Q psy6858 220 GIKGPEGHQLSRPEEVEAEAVTRAC--TIANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHA 297 (592)
Q Consensus 220 G~~~p~~~~~s~p~~~e~eav~~~i--~la~~~~~pl~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~ 297 (592)
...+ |.+.+.+.+ .+++..++++|+.|+++.++.+.++.+|.. .|++|+|+|||.++.
T Consensus 165 --------~~~~----E~~~i~r~l~~~la~~~g~kI~i~HiSt~~~ve~v~~ak~~--------~vtae~tpHhL~l~~ 224 (364)
T PLN02599 165 --------IFDR----EKVFIDTILAPLVQKLPQLKIVMEHITTMDAVEFVESCGDG--------NVAATVTPQHLLLNR 224 (364)
T ss_pred --------cccc----HHHHHHHHHHHHHHhccCCeEEEEecChHHHHHHHHhccCC--------CEEEEecHHHHhcCH
Confidence 0001 224456777 588899999999999999999999887742 699999999999998
Q ss_pred CCCCCcccccccceecCCCCCCCCCHHHHHHHHhcCCc-eEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhh---HHHH
Q psy6858 298 NQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENAL-QTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQD---RLSV 373 (592)
Q Consensus 298 ~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~-~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~---~~~~ 373 (592)
.++... .....++++||+|. .+++++||+.+.+|.+ +.+||||+|+....|. .|.|.+|++. .++.
T Consensus 225 ~~~~~~-~~~~~~k~~PPlR~-~~dr~aL~~al~~G~i~~~i~SDHaPh~~~~K~--------~~~g~~Gi~~~~~~l~~ 294 (364)
T PLN02599 225 NALFQG-GLQPHNYCLPVLKR-EIHREALVKAATSGSKKFFLGTDSAPHPKRAKE--------ASCGCAGIYSAPVALSL 294 (364)
T ss_pred HHHhcc-CCCCCeEEECCCCC-HHHHHHHHHHHHcCCCCEEEecCCCCCChHHhc--------CCCCCCCcccHHHHHHH
Confidence 876421 12345789999998 8999999999999996 8999999999877653 3456666666 5777
Q ss_pred HHHhhccCCCCCHHHHHHHHhHhHHHHcCCCCCCccc
Q psy6858 374 IWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVI 410 (592)
Q Consensus 374 ~~~~~v~~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I 410 (592)
++..+.+.+ +++++++++|.||||+||+..+||+|
T Consensus 295 l~~~~~~~g--~l~~l~~~~S~npA~~~gL~~~kg~i 329 (364)
T PLN02599 295 YAKAFEEAG--ALDKLEAFTSFNGPDFYGLPRNTSTI 329 (364)
T ss_pred HHHHHHhcC--CHHHHHHHHhHHHHHHhCCCCCCCeE
Confidence 655444434 89999999999999999994488874
No 84
>cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.
Probab=99.96 E-value=1.5e-27 Score=253.00 Aligned_cols=334 Identities=20% Similarity=0.220 Sum_probs=212.2
Q ss_pred EEEEccEEEcCCCceeeEEEEECCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCccccc-CCCCChhhHHHHHHH
Q psy6858 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELEL-MGATSVDDFYHGTKA 99 (592)
Q Consensus 21 llIkng~Iv~~d~~~~~dV~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~-~~~~~~d~~~~~~~~ 99 (592)
++|+|++|+++.....++|+|+||+|++|+++...+.+.++||++|++|+|||||+|+|..... ......+++...+++
T Consensus 1 ~~i~~~~v~~~~~~~~~~i~i~~g~I~~i~~~~~~~~~~~vid~~g~~l~PG~iD~H~H~~~g~~~~~~~~e~~~~~~~~ 80 (374)
T cd00854 1 LIIKNARILTPGGLEDGAVLVEDGKIVAIGPEDELEEADEIIDLKGQYLVPGFIDIHIHGGGGADFMDGTAEALKTIAEA 80 (374)
T ss_pred CEEEeEEEeCCCEEcccEEEEECCEEEEecCCCCcccCCcEEECCCCEecccEEEeeecccCCCCCCCCCHHHHHHHHHH
Confidence 4799999999844457899999999999998654444568999999999999999999985422 223357889999999
Q ss_pred HHcCCeeEEeccccCCCCccHHHHHHHHHHHhccC-ceeeeeccccccCCChH-------------HHHHHHHHHHHcCC
Q psy6858 100 AVAGGTTTIIDFALPRKGESLIKTYESWRQKADEK-VCCDYALHVGITWWSDQ-------------VQQEMAELCEKHGV 165 (592)
Q Consensus 100 ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------------~~~~~~~lv~~~Gv 165 (592)
++++||||++++....+.+.+.+.+..++...... ....+++|+..++++.. ..+++++++.. +.
T Consensus 81 ~~~~GvTtv~~t~~t~~~~~~~~~l~~~~~~~~~~~g~~~~g~hleGP~~~~~~~g~h~~~~~~~~~~~~~~~~~~~-~~ 159 (374)
T cd00854 81 LAKHGTTSFLPTTVTAPPEEIAKALAAIAEAIAEGQGAEILGIHLEGPFISPEKKGAHPPEYLRAPDPEELKKWLEA-AG 159 (374)
T ss_pred HHccCcceeeccccCCCHHHHHHHHHHHHHHhhcCCCCeeEEEeeecCccCcccCCCCCHHHcCCcCHHHHHHHHHh-cC
Confidence 99999999999987777777778888887765543 46788889888777443 22566666654 44
Q ss_pred cEEEEEEeeCCCcCCCHHHH--HHHHHHHHHcCCeEE-EecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHH
Q psy6858 166 NSFKTFMAYKGLYMLSDGEL--YDAFSAIKNLGAIAM-VHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTR 242 (592)
Q Consensus 166 ~~~k~~~~~~~~~~~~~~~l--~~~~~~a~~~g~~~~-vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~ 242 (592)
..+|++ .+.++.. .++++.++++|+++. .|.... ........+.|+...+|....-+.....+.-.-
T Consensus 160 ~~ik~~-------tlaPE~~~~~~~i~~~~~~gi~v~~GH~~a~---~~~~~~a~~~G~~~~tH~~n~m~~~~~r~~~~~ 229 (374)
T cd00854 160 GLIKLV-------TLAPELDGALELIRYLVERGIIVSIGHSDAT---YEQAVAAFEAGATHVTHLFNAMSPLHHREPGVV 229 (374)
T ss_pred CCEEEE-------EECCCCCChHHHHHHHHHCCeEEEeeCCcCC---HHHHHHHHHcCCCeeeECCCCCCCcCCCCCcHH
Confidence 667765 2345544 788999999999995 886532 234555556676665543322111110000000
Q ss_pred HHHHhcccCCCEEEEecccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCcccccccceecCCCCCCCCC
Q psy6858 243 ACTIANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETT 322 (592)
Q Consensus 243 ~i~la~~~~~pl~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr~~~~~ 322 (592)
...+. .+ .++ ..+..|+.|..+.
T Consensus 230 ~a~l~---~~------------------------------~~~-----~~li~dg~Hv~~~------------------- 252 (374)
T cd00854 230 GAALS---DD------------------------------DVY-----AELIADGIHVHPA------------------- 252 (374)
T ss_pred HHhhc---CC------------------------------CCe-----EEEEcCCCcCCHH-------------------
Confidence 00000 00 111 2233444443221
Q ss_pred HHHHHHHHhc-C-CceEEeCCCCCCCh---hhhhc-C-----CCCCCcCCCC-CcchhhHHHHHHHhhccCCCCCHHHHH
Q psy6858 323 PTHLLTLLNE-N-ALQTTGSDNCTFNK---NQKEL-G-----KDSFTHIPNG-VNGVQDRLSVIWEKGVVPGILSPEKFV 390 (592)
Q Consensus 323 ~~~l~~~l~~-G-~~~~~gsD~~~~~~---~~~~~-g-----~~~f~~~p~G-~~g~e~~~~~~~~~~v~~~~l~~~e~v 390 (592)
.+..+.+. | ..+++.||...+.. ....+ + .+....+..| ..|-...|...+..++..+++++.+++
T Consensus 253 --~~~~~~r~~g~~~~~lvtD~~~~~G~~~g~y~~~~~~~~~~~~~~~~~~g~laG~~~~l~~~~~~l~~~~~l~~~~al 330 (374)
T cd00854 253 --AVRLAYRAKGADKIVLVTDAMAAAGLPDGEYELGGQTVTVKDGVARLADGTLAGSTLTMDQAVRNMVKWGGCPLEEAV 330 (374)
T ss_pred --HHHHHHHhcCCCcEEEEeccccccCCCCCeEEECCEEEEEECCEEEcCCCCeeehHhhHHHHHHHHHHhhCCCHHHHH
Confidence 00111111 2 22334444311000 00000 0 0111111222 345455566666667777889999999
Q ss_pred HHHhHhHHHHcCCCCCCccccCCCCccEEEEeCC
Q psy6858 391 AVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYK 424 (592)
Q Consensus 391 ~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~ 424 (592)
+++|.|||+++|++.+.|+|++|+.||||+||.+
T Consensus 331 ~~aT~npA~~lg~~~~~G~i~~G~~ADlvv~d~~ 364 (374)
T cd00854 331 RMASLNPAKLLGLDDRKGSLKPGKDADLVVLDDD 364 (374)
T ss_pred HHHhHHHHHHcCCCCCcCCcCCCCcCCEEEECCC
Confidence 9999999999999777999999999999999986
No 85
>PRK14085 imidazolonepropionase; Provisional
Probab=99.96 E-value=3.5e-26 Score=243.67 Aligned_cols=316 Identities=19% Similarity=0.159 Sum_probs=189.6
Q ss_pred ccEEEEc-cEEEcCCC---------ceeeEEEEECCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCcccccCC--
Q psy6858 19 NRLLIKN-GKVVNADK---------ISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELELMG-- 86 (592)
Q Consensus 19 ~~llIkn-g~Iv~~d~---------~~~~dV~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~-- 86 (592)
|+++|+| +.|++.|. ..+++|+|+||+|++|++....+.+.++||++|++|||||||+|+|+.+....
T Consensus 1 ~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~v~i~~g~I~~Vg~~~~~~~~~~~iD~~g~~v~PGlId~H~Hl~~~~~r~~ 80 (382)
T PRK14085 1 MSTLITNIGELVTNDPELGEGPLGVLRDAAVVVEGGRVAWVGPAADAPAADERVDAGGRAVLPGFVDSHSHLVFAGDRSA 80 (382)
T ss_pred CcEEEEcccEEEcCCCcccCCCcccccCcEEEEECCEEEEEcCCccCCCCCeEEeCCCCEEecCeEecCcCccccCChhH
Confidence 6889999 59998652 23689999999999999865555577999999999999999999999542110
Q ss_pred ------------------------CCChhhHHH----HHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhcc-Ccee
Q psy6858 87 ------------------------ATSVDDFYH----GTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADE-KVCC 137 (592)
Q Consensus 87 ------------------------~~~~d~~~~----~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~-~~~~ 137 (592)
..+.++.+. ..+.++++||||+.|+... +..+.+.++..+..... ....
T Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~~~t~e~~~~~a~~~~~~~l~~G~Ttv~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 158 (382)
T PRK14085 81 EFAARMAGEPYSAGGIRTTVAATRAASDEELRANVRRLVAEALRQGTTTVETKTGY--GLTVEDEARSARIAAEFTDEVT 158 (382)
T ss_pred HHHhhhcCCCccCCChHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCceEEEcCCcC--CCCHHHHHHHHHHHHHhhhcce
Confidence 123445443 4456688999999997422 22233333322211100 0111
Q ss_pred eeeccccccCC--Ch-HHHHH----HHHHHHHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhH
Q psy6858 138 DYALHVGITWW--SD-QVQQE----MAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIID 210 (592)
Q Consensus 138 ~~~~~~~~~~~--~~-~~~~~----~~~lv~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~ 210 (592)
..+.+.....+ +. ...+. +...++. ....++++... ...+++++.++++.++++|+++.+|+.... ..
T Consensus 159 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~idi~~~~---~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~-~~ 233 (382)
T PRK14085 159 FLGAHVVPPEYAGDADEYVDLVCGPMLDAVAP-HARWIDVFCER---GAFDEDQSRRVLTAGRAAGLGLRVHGNQLG-PG 233 (382)
T ss_pred eeccccCCcccCCCHHHHHHHHHHHHHHHHHH-hCCeEEEEecC---CCCCHHHHHHHHHHHHHcCCCeEEEeCccc-CC
Confidence 12222211111 11 11111 2234443 45556665432 246889999999999999999999986411 01
Q ss_pred HHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCEEEEecccHHHHHHHHHHHHHHHhcCCceeeeeeccc
Q psy6858 211 KNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLA 290 (592)
Q Consensus 211 ~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~ 290 (592)
.....+++.|....+|.....+ +.++++++. |+ .+.. ++
T Consensus 234 ~~v~~~~~~g~~~i~H~~~l~~---------------------------------~~~~~la~~----gv--~~~~--~P 272 (382)
T PRK14085 234 PGVRLAVELGAASVDHCTYLTD---------------------------------ADVDALAGS----GT--VATL--LP 272 (382)
T ss_pred hHHHHHHHcCCCcHHHhCCCCH---------------------------------HHHHHHHHc----CC--EEEE--Cc
Confidence 2234444445443332222211 223334444 55 2211 11
Q ss_pred ceeecCCCCCCCcccccccceecCCCCCCCCCHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhH
Q psy6858 291 AAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDR 370 (592)
Q Consensus 291 ~~l~~d~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~ 370 (592)
... +. .+ .....+.++++.|+.+++|||+.+...... +.
T Consensus 273 ~~~------~~--------------~~---~~~~~~~~l~~aGv~v~lgsD~~~~~~~~~-----------------~~- 311 (382)
T PRK14085 273 GAE------FS--------------TR---QPYPDARRLLDAGVTVALASDCNPGSSYTS-----------------SM- 311 (382)
T ss_pred HHH------Hh--------------cC---CCCchHHHHHHCCCcEEEEeCCCCCCChHH-----------------HH-
Confidence 110 00 00 011235579999999999999854332110 11
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCc
Q psy6858 371 LSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKA 425 (592)
Q Consensus 371 ~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~ 425 (592)
...+...+...++++.++++++|.|||++||++ .+|+|++|+.|||||+|.+.
T Consensus 312 -~~~~~~~~~~~~l~~~~al~~aT~~~A~~lg~~-~~G~l~~G~~ADlvv~d~~~ 364 (382)
T PRK14085 312 -PFCVALAVRQMGMTPAEAVWAATAGGARALRRD-DVGVLAVGARADLHVLDAPS 364 (382)
T ss_pred -HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC-CCCCcCCCCCCCEEEEcCCC
Confidence 111222334567999999999999999999996 68999999999999999874
No 86
>PRK08418 chlorohydrolase; Provisional
Probab=99.96 E-value=6.3e-27 Score=250.81 Aligned_cols=362 Identities=15% Similarity=0.114 Sum_probs=205.2
Q ss_pred EEEEccEEEcCCC---c-eeeEEEEECCEEEEeecCCC---CCCCCeEEecCCCEEeeCccccCcCcccccCC-------
Q psy6858 21 LLIKNGKVVNADK---I-SDLDIYIENGVIQQLGRNLI---VPGGVRVIDAAGSYVIPGGIDPHTHFELELMG------- 86 (592)
Q Consensus 21 llIkng~Iv~~d~---~-~~~dV~I~dG~I~~Ig~~~~---~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~------- 86 (592)
.+|+|+.|++.+. . .+++|+|+ |+|++||+... ...+.++||+.|++|||||||+|+|+.+....
T Consensus 2 ~~i~~~~v~t~~~~~~~~~~~~v~v~-~~I~~ig~~~~~~~~~~~~~vid~~g~~v~PG~Vn~H~H~~~~~~rg~~~~~~ 80 (408)
T PRK08418 2 KIIGASYIFTCDENFEILEDGAVVFD-DKILEIGDYENLKKKYPNAKIQFFKNSVLLPAFINPHTHLEFSANKTTLDYGD 80 (408)
T ss_pred EEEEccEEEecCCCCceeeccEEEEC-CEEEEecCHHHHHhhCCCCcEEecCCcEEccCccccccchhhhhhccccCCCc
Confidence 4799999998662 2 36899999 99999997422 12245699999999999999999999543211
Q ss_pred -------------CCChhhHH----HHHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeecccccc-CC
Q psy6858 87 -------------ATSVDDFY----HGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVGIT-WW 148 (592)
Q Consensus 87 -------------~~~~d~~~----~~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~ 148 (592)
....++.+ .+...++++||||+.|+.... ...+++.+. ..+....+... +.. ..
T Consensus 81 ~~~wl~~~~~~~~~l~~~~~~~~~~~~~~E~l~~GtTtv~d~~~~~---~~~~a~~~~----GiR~~~~~~~~-~~~~~~ 152 (408)
T PRK08418 81 FIPWLGSVINHREDLLEKCKGALIQQAINEMLKSGVGTIGAISSFG---IDLEICAKS----PLRVVFFNEIL-GSNASA 152 (408)
T ss_pred hHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHhcCceEEEEeecch---hhHHHHHhc----CCeEEEEeeee-CCCccc
Confidence 01122222 234456889999999875321 112332221 11222211111 111 01
Q ss_pred ChHHHHHHHHHHHH---cCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchh-hhHHHHHHHHHcCC---
Q psy6858 149 SDQVQQEMAELCEK---HGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGE-IIDKNTQKLLAAGI--- 221 (592)
Q Consensus 149 ~~~~~~~~~~lv~~---~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~-~i~~~~~~~~~~G~--- 221 (592)
.....+++.+.+.. .....++..++++..+.++++.+.++.+.|+++|+++++|..... ...... ...|.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~aph~~~t~s~e~l~~~~~~A~~~~~~i~~H~~E~~~E~~~~~---~~~G~~~~ 229 (408)
T PRK08418 153 VDELYQDFLARFEESKKFKSKKFIPAIAIHSPYSVHPILAKKALQLAKKENLLVSTHFLESKAEREWLE---ESKGWFKK 229 (408)
T ss_pred hhhhHHHHHHHHHhhhcccCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCHHHHHHHH---hccCchhh
Confidence 11111212111211 123457788889999999999999999999999999999975432 111111 11121
Q ss_pred ----CCCCCccCCCcHHHHHHHHHHHHHHhccc-CCCEEEEecccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecC
Q psy6858 222 ----KGPEGHQLSRPEEVEAEAVTRACTIANQV-DCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTH 296 (592)
Q Consensus 222 ----~~p~~~~~s~p~~~e~eav~~~i~la~~~-~~pl~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d 296 (592)
.+.+.-...+|.+. .... +.+..+.|+..-+. +.++.+++. |.. .++++.....++.
T Consensus 230 ~~~~~~~~~~~~~~pv~~-----------l~~~g~~~~~~~H~~~~~~-~di~~la~~----g~~-v~~cP~sn~~lg~- 291 (408)
T PRK08418 230 FFEKFLKEPKPLYTPKEF-----------LELFKGLRTLFTHCVYASE-EELEKIKSK----NAS-ITHCPFSNRLLSN- 291 (408)
T ss_pred hhhhhcccccccCCHHHH-----------HHHhCCCCeEEEecccCCH-HHHHHHHHc----CCc-EEECHhHHHHhcC-
Confidence 00000001122211 1112 34566777663332 223444444 661 2333222111110
Q ss_pred CCCCCCcccccccceecCCCCCCCCCHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHH
Q psy6858 297 ANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWE 376 (592)
Q Consensus 297 ~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~ 376 (592)
..+| +.++++.|+.+++|||..+.+.....+ . |.++.....
T Consensus 292 ---------------g~~p----------~~~~~~~Gi~v~lGtD~~~~~~~~~~~-----~---------em~~~~~~~ 332 (408)
T PRK08418 292 ---------------KALD----------LEKAKKAGINYSIATDGLSSNISLSLL-----D---------ELRAALLTH 332 (408)
T ss_pred ---------------CCcc----------HHHHHhCCCeEEEeCCCCCCCCCcCHH-----H---------HHHHHHHHh
Confidence 1123 347999999999999975544322211 1 444444333
Q ss_pred hhccCCCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEE
Q psy6858 377 KGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVI 456 (592)
Q Consensus 377 ~~v~~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Vi 456 (592)
+.. ....++.++++++|.|+|++||+. .|+|++|+.||||++|.+...+ + ...+|+.-+.....|..||
T Consensus 333 ~~~-~~~~~~~~~l~~aT~~gA~alg~~--~G~l~~G~~ADlv~~d~~~~~~-~-------~~~~~~~~~~~~~~v~~v~ 401 (408)
T PRK08418 333 ANM-PLLELAKILLLSATRYGAKALGLN--NGEIKEGKDADLSVFELPEECT-K-------KEQLPLQFILHAKEVKKLF 401 (408)
T ss_pred ccC-CccccHHHHHHHHHHHHHHHhCCC--CccccCCCccCEEEEeCCCCCC-C-------hhHhHHHHHhccCccceEE
Confidence 221 112346899999999999999994 7999999999999999863211 1 0122332222334788999
Q ss_pred ECCEEE
Q psy6858 457 VGGRVC 462 (592)
Q Consensus 457 v~GkvV 462 (592)
++|++|
T Consensus 402 v~G~~v 407 (408)
T PRK08418 402 IGGKEV 407 (408)
T ss_pred ECCEEc
Confidence 999987
No 87
>COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only]
Probab=99.96 E-value=7.5e-27 Score=251.75 Aligned_cols=377 Identities=20% Similarity=0.223 Sum_probs=231.1
Q ss_pred ccEEEEccEEEcCCCc---eeeEEEEECCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCcccccC----------
Q psy6858 19 NRLLIKNGKVVNADKI---SDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELELM---------- 85 (592)
Q Consensus 19 ~~llIkng~Iv~~d~~---~~~dV~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~---------- 85 (592)
+.++|+|..++..|.. ..++|.|+||+|+.||+....+.+.++||+.|++|+|||||+|+|+.+..+
T Consensus 2 ~~~~i~~~~~~~~d~~~~~~~~~~~i~~g~I~~ig~~~~~~~~~~~iD~~~~lv~Pgfvn~H~H~~~t~~~g~~~~~~l~ 81 (421)
T COG0402 2 TMLLIRGDLLLTNDPEGRIEDGDLVIEDGKIVAIGANAEGPPDEEVIDAKGKLVLPGFVNAHTHLDQTLLRGLADDLPLL 81 (421)
T ss_pred cceeeeCcEEeecCcccceeeeeEEEcCCEEEEeCCcCCCCCCceeecCCCCEeccCccccccchHHHHHhhhhcccchH
Confidence 4678889988875433 469999999999999997665457899999999999999999999854221
Q ss_pred ------------CCCChhhHHHHH----HHHHcCCeeEEeccccCCCC--ccHHHHHHHHHHHhcc-Cceeeeecccccc
Q psy6858 86 ------------GATSVDDFYHGT----KAAVAGGTTTIIDFALPRKG--ESLIKTYESWRQKADE-KVCCDYALHVGIT 146 (592)
Q Consensus 86 ------------~~~~~d~~~~~~----~~ala~GtTti~d~~~~~~~--~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~ 146 (592)
...++++.+..+ ..++++|||+++.+...... ....+++.+.+.+... ..+.+.++.....
T Consensus 82 ~wl~~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~G~t~~~~~~~~~~~~~~~~~~a~~~~g~r~~~~~~~~~~~~p~~~~ 161 (421)
T COG0402 82 EWLERYVWPREARLLTEEDLYARALLALLEMLRNGTTTARTHVDVVAESADAAFEAALEVGLRAVLGPVLQDVAFPDPGA 161 (421)
T ss_pred HHHHHHHhHHHhhcCCHHHHHHHHHHHHHHHHhcCccccccccchhhhhHHHHHHHHHHhCCeeEeeeccccCCCCcccc
Confidence 113455555544 35578999998766432211 1122233333222221 1111211111222
Q ss_pred CCChHHHHHHHHHHHH-cCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEec-CchhhhHHHHHHHHHcCCCCC
Q psy6858 147 WWSDQVQQEMAELCEK-HGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHA-ENGEIIDKNTQKLLAAGIKGP 224 (592)
Q Consensus 147 ~~~~~~~~~~~~lv~~-~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHa-e~~~~i~~~~~~~~~~G~~~p 224 (592)
...+. .++.+++.++ .+.....+...++..+.++++.+..+.+.+++.|+++++|+ |+.+.+..... ..|..
T Consensus 162 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~v~iH~~E~~~e~~~~~~---~~g~~-- 235 (421)
T COG0402 162 ETDEE-LEETEELLREAHGLGRDVVGLAPHFPYTVSPELLESLDELARKYGLPVHIHLAETLDEVERVLE---PYGAR-- 235 (421)
T ss_pred cchHH-HHHHHHHHHHHhcCCCeeEEEecCCCCCCCHHHHHHHHHHHhcCCCceEEEecCcHHHHHHHHh---hcCCC--
Confidence 22221 2334444433 34445667778888889999999999999999999999996 66544433322 12221
Q ss_pred CCccCCCcHHHHHHHHHHHHHHhcccCCCEEEEecccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCcc
Q psy6858 225 EGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTW 304 (592)
Q Consensus 225 ~~~~~s~p~~~e~eav~~~i~la~~~~~pl~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~ 304 (592)
|.+ -.......+-+..+.|+......+. ...++. |+. .++|+..+..|+..
T Consensus 236 -------~~~--------~~~~~g~l~~~~~~~H~~~~~~~e~-~~l~~~----g~~-v~~cP~sN~~L~sG-------- 286 (421)
T COG0402 236 -------PVE--------RLDLLGLLGSHTLLAHCVHLSEEEL-ELLAES----GAS-VVHCPRSNLKLGSG-------- 286 (421)
T ss_pred -------HHH--------HHHHcCCCCCCeEEEEeccCCHHHH-HHHhhC----CCe-EEECcchhccccCC--------
Confidence 111 1112233334445555553332222 223344 661 34455444333211
Q ss_pred cccccceecCCCCCCCCCHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCC
Q psy6858 305 HDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGIL 384 (592)
Q Consensus 305 ~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l 384 (592)
.. .+.+++..|+++.+|||.+..+....++. +++.+..+++.......
T Consensus 287 --------~~----------p~~~~~~~gv~v~~gTD~~~~~~~~d~l~--------------~~~~a~~l~~~~~~~~~ 334 (421)
T COG0402 287 --------IA----------PVRRLLERGVNVALGTDGAASNNVLDMLR--------------EMRTADLLQKLAGGLLA 334 (421)
T ss_pred --------CC----------CHHHHHHcCCCEEEecCCccccChHHHHH--------------HHHHHHHHHHhhcCCCc
Confidence 11 13478999999999999988887544431 66667666654432211
Q ss_pred CHH--HHHHHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEEECCEEE
Q psy6858 385 SPE--KFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVC 462 (592)
Q Consensus 385 ~~~--e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv~GkvV 462 (592)
+.. +++.++|.|+||+||+ .+.|+|++|++|||||+|++.+...+.. . .+.+....-...+..|+++|+.+
T Consensus 335 ~~~~~~~l~~aT~~gA~alg~-~~~G~le~G~~ADlvvld~~~~~~~~~~-~-----~~~~v~~~~~~~v~~v~~~g~~v 407 (421)
T COG0402 335 AQLPGEALDMATLGGAKALGL-DDIGSLEVGKKADLVVLDASAPHLAPLR-P-----VSRLVFAAGGKDVDRVLVDGRLV 407 (421)
T ss_pred ccchHHHHHHHHhhHHHHcCC-cccCCcccccccCEEEEcCCCCcccccc-H-----HHHHHHhcCCCceeEEEECCEEE
Confidence 111 3899999999999999 7899999999999999999976443322 0 00111111222789999999999
Q ss_pred EECCeee
Q psy6858 463 VDEGNLR 469 (592)
Q Consensus 463 ~~~g~l~ 469 (592)
+++|++.
T Consensus 408 ~~~~~~~ 414 (421)
T COG0402 408 MEDGRLL 414 (421)
T ss_pred EEcceeh
Confidence 9999875
No 88
>cd01313 Met_dep_hydrolase_E Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.95 E-value=4.4e-26 Score=245.45 Aligned_cols=348 Identities=16% Similarity=0.146 Sum_probs=202.5
Q ss_pred CCCce-eeEE-EEECCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCcccccC-----------------------
Q psy6858 31 ADKIS-DLDI-YIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELELM----------------------- 85 (592)
Q Consensus 31 ~d~~~-~~dV-~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~----------------------- 85 (592)
+|+.. +++| +|+||+|++||+... .++||+.|++|||||||+|+|+.+...
T Consensus 4 ~~~~~~~~~i~~v~~g~I~~Vg~~~~----~~~iD~~g~lv~PGfVn~H~Hl~~~~~rg~~~~~~~~~~~l~~w~~~~~~ 79 (418)
T cd01313 4 PEGWERNVRIEVDADGRIAAVNPDTA----TEAVALLGGALLPGMPNLHSHAFQRAMAGLTEYRGSAADSFWTWRELMYR 79 (418)
T ss_pred CCceecCeEEEEeCCCeEEEecCCCC----CcccccCCCeeccCccccCccHHHHHhcccccccCCCCCChhhHHHHHHH
Confidence 34443 5899 999999999998643 256999999999999999999965311
Q ss_pred --CCCChhhHHHHH----HHHHcCCeeEEeccccCCCC---------ccHHHHHHHHHHHhccCceeeeecc--cc---c
Q psy6858 86 --GATSVDDFYHGT----KAAVAGGTTTIIDFALPRKG---------ESLIKTYESWRQKADEKVCCDYALH--VG---I 145 (592)
Q Consensus 86 --~~~~~d~~~~~~----~~ala~GtTti~d~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~--~~---~ 145 (592)
...+.++++.++ ..++++||||+.|+...... ....++..+.......+......+. .. .
T Consensus 80 ~~~~~t~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~GiR~~~~~~~~~~~~~~~~ 159 (418)
T cd01313 80 FAARLTPEQIEAIARQLYIEMLLAGITAVGEFHYVHHDPDGTPYADPAELAQRVIAAASDAGIGITLLPVLYARAGFGGP 159 (418)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHhCCCEEEEeeeeccCCCCCccCChhhhHHHHHHHHHHhCCeEEeeeeEEeccCCCCC
Confidence 113344554433 34578999999998532110 0112322222222222222211111 00 0
Q ss_pred cCC---------ChHHHHHHHHHHHH-cCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHH
Q psy6858 146 TWW---------SDQVQQEMAELCEK-HGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQK 215 (592)
Q Consensus 146 ~~~---------~~~~~~~~~~lv~~-~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~ 215 (592)
..+ ..+..+.+++++.. .....+...++++..+.++++.++++++.|++ |+++++|+.+.. .+....
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~s~e~l~~~~~~a~~-g~~i~~H~~e~~--~e~~~~ 236 (418)
T cd01313 160 APNPGQRRFINGYEDFLGLLEKALRAVKEHAAARIGVAPHSLRAVPAEQLAALAALASE-KAPVHIHLAEQP--KEVDDC 236 (418)
T ss_pred CCchhhhhhcccHHHHHHHHHHHhhhhccCCceEEEEccCCCCCCCHHHHHHHHHHHhc-CCceEEEeCCCH--HHHHHH
Confidence 101 01222333332211 12234666677788788999999999999999 999999984322 111111
Q ss_pred HHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCEEEEecccHHHHHHHHHHHHHHHhcCCceee-eeecccceee
Q psy6858 216 LLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTL-YGETLAAAVG 294 (592)
Q Consensus 216 ~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v-~~e~~~~~l~ 294 (592)
....|.. |. +.+.+ ....+-++.+.|+..-.. +.++.+++. |+ .+ ++......++
T Consensus 237 ~~~~g~~---------~i----~~l~~----~g~l~~~~~~~H~~~l~~-~~~~~la~~----g~--~v~~~P~sn~~lg 292 (418)
T cd01313 237 LAAHGRR---------PV----ELLLD----HGHLDARWCLVHATHLTD-NETLLLGRS----GA--VVGLCPTTEANLG 292 (418)
T ss_pred HHHcCCC---------HH----HHHHH----cCCCCCCEEEEeCCCCCH-HHHHHHHHc----CC--EEEECCCchhhcc
Confidence 1112221 11 11111 123456677888775432 335666665 76 32 2222211110
Q ss_pred cCCCCCCCcccccccceecCCCCCCCCCHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHH
Q psy6858 295 THANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVI 374 (592)
Q Consensus 295 ~d~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~ 374 (592)
...+|++ ++++.|+.+++|||..... .. |. +.++...
T Consensus 293 ----------------~g~~p~~----------~l~~~Gv~v~lGtD~~~~~---d~-----~~---------~~~~~~~ 329 (418)
T cd01313 293 ----------------DGIFPAA----------ALLAAGGRIGIGSDSNARI---DL-----LE---------ELRQLEY 329 (418)
T ss_pred ----------------CCCCCHH----------HHHHCCCcEEEecCCCCCc---CH-----HH---------HHHHHHH
Confidence 0123333 7899999999999953211 00 11 2333333
Q ss_pred HHhhcc--------CCCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCe
Q psy6858 375 WEKGVV--------PGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGL 446 (592)
Q Consensus 375 ~~~~v~--------~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~ 446 (592)
.++... ...+++.++++++|.|+|++||+. +|+|++||.|||||||.+.++..+. ...+|+..+
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~l~~~T~~gA~alg~~--~Gsle~Gk~ADlvvld~~~~~~~p~------~~~~~~~~l 401 (418)
T cd01313 330 SQRLRDRARNVLATAGGSSARALLDAALAGGAQALGLA--TGALEAGARADLLSLDLDHPSLAGA------LPDTLLDAW 401 (418)
T ss_pred HHHHHhcccccccccCCCCHHHHHHHHHHHHHHHhCCC--CCeECCCCccCEEEEcCCCccccCC------CchhHHHHH
Confidence 322221 237899999999999999999994 9999999999999999986554332 013455555
Q ss_pred EEee---eeeEEEECCE
Q psy6858 447 VCHG---VPEYVIVGGR 460 (592)
Q Consensus 447 ~~~g---~~~~Viv~Gk 460 (592)
.+.+ .|..||++||
T Consensus 402 v~~~~~~~V~~v~V~G~ 418 (418)
T cd01313 402 VFAAGDREVRDVVVGGR 418 (418)
T ss_pred eecCCCCceeEEEeCCC
Confidence 5444 6889999996
No 89
>cd01296 Imidazolone-5PH Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate. In bacteria, the enzyme is part of histidine utilization (hut) operon.
Probab=99.95 E-value=3.4e-26 Score=243.07 Aligned_cols=301 Identities=19% Similarity=0.224 Sum_probs=175.4
Q ss_pred EEEECCEEEEeecCCCCC----CCCeEEecCCCEEeeCccccCcCcccccC----------C------------------
Q psy6858 39 IYIENGVIQQLGRNLIVP----GGVRVIDAAGSYVIPGGIDPHTHFELELM----------G------------------ 86 (592)
Q Consensus 39 V~I~dG~I~~Ig~~~~~~----~~~~vIDa~G~~V~PG~ID~HtH~~~~~~----------~------------------ 86 (592)
|+|+||+|++|++....+ .+.++||++|++|+|||||+|+|+.+... +
T Consensus 1 i~i~~g~I~~ig~~~~~~~~~~~~~~~iD~~G~~v~Pg~vn~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (371)
T cd01296 1 IAIRDGRIAAVGPAASLPAPGPAAAEEIDAGGRAVTPGLVDCHTHLVFAGDRVDEFAARLAGASYEEILAAGGGILSTVR 80 (371)
T ss_pred CEEECCEEEEEeCchhcccccCCCceEEECCCCEEecceeecCCCCcCCCCcHHHHHHHHCCCCHHHHHHcCCChHHHHH
Confidence 689999999999854432 46689999999999999999999965321 0
Q ss_pred ---CCChhhHHH----HHHHHHcCCeeEEeccccCC----CCccHHHHHHHHHHHhccCce-eeeeccccccCC--ChHH
Q psy6858 87 ---ATSVDDFYH----GTKAAVAGGTTTIIDFALPR----KGESLIKTYESWRQKADEKVC-CDYALHVGITWW--SDQV 152 (592)
Q Consensus 87 ---~~~~d~~~~----~~~~ala~GtTti~d~~~~~----~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~ 152 (592)
..+.++++. +.+.+++.|||++.++.... ......+++.+.+........ +....+..-... .+..
T Consensus 81 ~~~~~~~~d~~~~a~~~~~~~~~~Gvt~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~ 160 (371)
T cd01296 81 ATRAASEDELFASALRRLARMLRHGTTTVEVKSGYGLDLETELKMLRVIRRLKEEGPVDLVSTFLGAHAVPPEYKGREEY 160 (371)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHCCceEEEecccCCCCHHHHHHHHHHHHHHHhhCCCceEeeeeecccCCcccCChHHH
Confidence 123345544 44566789999999852211 112234445444443111111 111001111111 1111
Q ss_pred HH-HHHHHH----HHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCc
Q psy6858 153 QQ-EMAELC----EKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGH 227 (592)
Q Consensus 153 ~~-~~~~lv----~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~ 227 (592)
.+ ..++++ .+.++..++++... ...+.+++.++++.|+++|..+.+|+....... ........
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~A~~~g~~v~~H~~e~~~~~-~~~~~~~~-------- 228 (371)
T cd01296 161 IDLVIEEVLPAVAEENLADFCDVFCEK---GAFSLEQSRRILEAAKEAGLPVKIHADELSNIG-GAELAAEL-------- 228 (371)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEeecC---CccCHHHHHHHHHHHHHCCCeEEEEEcCcCCCC-HHHHHHHc--------
Confidence 11 112222 23456777765432 234688999999999999999999986432100 01111111
Q ss_pred cCCCcHHHHHHHHHHHHHHhcccCCCEEEEecccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCccccc
Q psy6858 228 QLSRPEEVEAEAVTRACTIANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQ 307 (592)
Q Consensus 228 ~~s~p~~~e~eav~~~i~la~~~~~pl~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~~~ 307 (592)
++ ..+.|+..-. .+.++.+++. |+ .+. .++..... +.
T Consensus 229 -----------------------g~-~~i~H~~~~~-~~~i~~la~~----g~--~v~--~~P~~~~~--------l~-- 265 (371)
T cd01296 229 -----------------------GA-LSADHLEHTS-DEGIAALAEA----GT--VAV--LLPGTAFS--------LR-- 265 (371)
T ss_pred -----------------------CC-CeeHHhcCCC-HHHHHHHHHc----CC--eEE--EChHHHHH--------hC--
Confidence 11 1123333211 2345555555 66 332 12111000 00
Q ss_pred ccceecCCCCCCCCCHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHH
Q psy6858 308 AAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPE 387 (592)
Q Consensus 308 ~~~~~~pplr~~~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~ 387 (592)
. ..+|+ .++++.|+.+++|||+.++... ...+...+..++...++++.
T Consensus 266 ~---~~~~~----------~~l~~~Gv~v~lgsD~~p~~~~-------------------~~~l~~~~~~~~~~~~l~~~ 313 (371)
T cd01296 266 E---TYPPA----------RKLIDAGVPVALGTDFNPGSSP-------------------TSSMPLVMHLACRLMRMTPE 313 (371)
T ss_pred C---CCCCH----------HHHHHCCCcEEEecCCCCCCCh-------------------HHHHHHHHHHHHHhcCCCHH
Confidence 0 02333 3789999999999998554311 11122233334455679999
Q ss_pred HHHHHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCce
Q psy6858 388 KFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAK 426 (592)
Q Consensus 388 e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~ 426 (592)
++++++|.|||+++|+++++|+|++|++|||||+|.+..
T Consensus 314 ~al~~aT~~~A~~lg~~~~~G~i~~G~~ADlvv~d~~~~ 352 (371)
T cd01296 314 EALTAATINAAAALGLGETVGSLEVGKQADLVILDAPSY 352 (371)
T ss_pred HHHHHHHHHHHHHhCCCCCceeeCCCCCcCEEEECCCch
Confidence 999999999999999988899999999999999999854
No 90
>TIGR01224 hutI imidazolonepropionase. This enzyme catalyzes the third step in histidine degradation.
Probab=99.95 E-value=1.3e-25 Score=239.24 Aligned_cols=325 Identities=20% Similarity=0.212 Sum_probs=181.9
Q ss_pred eeeEEEEECCEEEEeecCCCCCC--CCeEEecCCCEEeeCccccCcCcccccCC--------------------------
Q psy6858 35 SDLDIYIENGVIQQLGRNLIVPG--GVRVIDAAGSYVIPGGIDPHTHFELELMG-------------------------- 86 (592)
Q Consensus 35 ~~~dV~I~dG~I~~Ig~~~~~~~--~~~vIDa~G~~V~PG~ID~HtH~~~~~~~-------------------------- 86 (592)
.+++|+|+||+|++||+....+. +.++||++|++|||||||+|+|+.+....
T Consensus 2 ~~~~v~i~~g~I~~vg~~~~~~~~~~~~~iD~~g~~v~PGlin~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (377)
T TIGR01224 2 EDAVILIHGGKIVWIGQLAALPGEEATEIIDCGGGLVTPGLVDPHTHLVFAGDRVNEFEMKLQGASYLEILAQGGGILST 81 (377)
T ss_pred CceEEEEECCEEEEEechhhCCcccCCeEEeCCCCEEcccEEecccCccccCCcHHHHHHHhCCCCHHHHHHhcCChHHH
Confidence 36899999999999998432232 66899999999999999999999642110
Q ss_pred -----CCChhhHHHHH----HHHHcCCeeEEeccccCCC----CccHHHHHHHHHHHhccCceeeeeccccccC----CC
Q psy6858 87 -----ATSVDDFYHGT----KAAVAGGTTTIIDFALPRK----GESLIKTYESWRQKADEKVCCDYALHVGITW----WS 149 (592)
Q Consensus 87 -----~~~~d~~~~~~----~~ala~GtTti~d~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~----~~ 149 (592)
..+.++++..+ ..+++.||||+-+...... .....++.++............+......+. ..
T Consensus 82 ~~~~~~~~~ed~~~~a~~~~~e~l~~Gvt~ve~~~~~g~~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 161 (377)
T TIGR01224 82 VRATRAASEEELLKLALFRLKSMLRSGTTTAEVKSGYGLDLETELKMLRAAKALHEEQPVDVVTTFLGAHAVPPEFQGRP 161 (377)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHCCceEEEecccCCCCHHHHHHHHHHHHHHHhhCCCceEeeeeecccCCccccCCH
Confidence 12334444433 4557899999933211110 0112334443333221111110110001110 01
Q ss_pred hHHHHHH-HHHHH---H-cCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCC
Q psy6858 150 DQVQQEM-AELCE---K-HGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGP 224 (592)
Q Consensus 150 ~~~~~~~-~~lv~---~-~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p 224 (592)
++..++. +.+++ . .++..++.+- .+. ..+.+++.++++.|+++|+++.+|+...... .....+...|....
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~--~~~~~~~~~~~~~A~~~g~~v~~H~~e~~~~-~~~~~~~~~g~~~~ 237 (377)
T TIGR01224 162 DDYVDGICEELIPQVAEEGLASFADVFC-EAG--VFSVEQSRRILQAAQEAGLPVKLHAEELSNL-GGAELAAKLGAVSA 237 (377)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCeeEEEe-cCC--CcCHHHHHHHHHHHHHCCCCEEEEecCCCCC-CHHHHHHHcCCCcc
Confidence 1111111 11222 1 2355555432 222 3467899999999999999999998542110 01111111221111
Q ss_pred CCccCCCcHHHHHHHHHHHHHHhcccCCCEEEEecccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCcc
Q psy6858 225 EGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTW 304 (592)
Q Consensus 225 ~~~~~s~p~~~e~eav~~~i~la~~~~~pl~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~ 304 (592)
.|.+++ + .+.++.+++. |+ .+ ..|+.+....+
T Consensus 238 -----------------------------~H~~~~-~---~~~l~~la~~----g~--~~--~~~P~~~~~l~------- 269 (377)
T TIGR01224 238 -----------------------------DHLEHA-S---DAGIKALAEA----GT--VA--VLLPGTTFYLR------- 269 (377)
T ss_pred -----------------------------HHHhcC-C---HHHHHHHHhc----CC--EE--EECchHHHhcC-------
Confidence 122233 2 2334555555 66 32 22222100000
Q ss_pred cccccceecCCCCCCCCCHHHHHHHHhcCCceEEeCCCCC-CChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCC
Q psy6858 305 HDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCT-FNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGI 383 (592)
Q Consensus 305 ~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~~~gsD~~~-~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~ 383 (592)
...+| +.++++.|+.+++|||+.+ ++.... |...+...+...+
T Consensus 270 ------~~~~p----------~~~l~~~Gv~v~lgTD~~~~~~~~~~--------------------~~~~~~~~~~~~~ 313 (377)
T TIGR01224 270 ------ETYPP----------ARQLIDYGVPVALATDLNPGSSPTLS--------------------MQLIMSLACRLMK 313 (377)
T ss_pred ------CcCcc----------HHHHHHCCCCEEEECCCCCCCChhHH--------------------HHHHHHHHHHhcC
Confidence 01122 3468899999999999755 332111 1112222234467
Q ss_pred CCHHHHHHHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEEECCEE
Q psy6858 384 LSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRV 461 (592)
Q Consensus 384 l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv~Gkv 461 (592)
+++.++++++|.|||+++|+++++|+|++|+.|||||||.+....+... .....|..||++||+
T Consensus 314 ls~~eal~~~T~~~A~~lg~~~~~G~l~~G~~ADlvv~d~~~~~~~~~~--------------~~~~~v~~v~v~G~~ 377 (377)
T TIGR01224 314 MTPEEALHAATVNAAYALGLGEERGTLEAGRDADLVILSAPSYAEIPYH--------------YGVNHVHAVIKNGNI 377 (377)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCceeeCCCCcCCEEEEcCCChHHhhhh--------------cCCCCceEEEECCCC
Confidence 9999999999999999999987799999999999999999854322110 011267899999984
No 91
>TIGR03583 EF_0837 probable amidohydrolase EF_0837/AHA_3915. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown.
Probab=99.95 E-value=3.6e-25 Score=234.56 Aligned_cols=336 Identities=24% Similarity=0.232 Sum_probs=189.5
Q ss_pred ccEEEEccEEEcCCCceeeEEEEECCEEEEeecCCCCCCCCeEEecCC-CEEeeCccccCcCcccccCCCCChhhHHHHH
Q psy6858 19 NRLLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAG-SYVIPGGIDPHTHFELELMGATSVDDFYHGT 97 (592)
Q Consensus 19 ~~llIkng~Iv~~d~~~~~dV~I~dG~I~~Ig~~~~~~~~~~vIDa~G-~~V~PG~ID~HtH~~~~~~~~~~~d~~~~~~ 97 (592)
++++|+|++|+|+. ..+|+|+||+|++|+++...+ +.++||++| ++|+|||||+|+|+..+... ..+++ .
T Consensus 1 ~~~~i~n~~i~~~~---~~~v~i~~g~I~~v~~~~~~~-~~~~iD~~g~~~l~PG~ID~H~H~~~~~~~--~~~~~---~ 71 (365)
T TIGR03583 1 YDLLIKNGRTVNGT---PVDIAIEDGKIAAVGTTITGS-AKQTIDLEGETYVSAGWIDDHTHCFPKSAL--YYDEP---D 71 (365)
T ss_pred CcEEEECcEEecCC---eeEEEEECCEEEEecCCCCCC-CCeEEECCCCeEEecCEEEeeeccCCCccc--ccCCH---h
Confidence 57899999999853 459999999999998754333 468999999 99999999999999744321 12233 2
Q ss_pred HHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCc--eeeeeccccc-----cCCChHHHHHHHHHHHH-c-CCcEE
Q psy6858 98 KAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKV--CCDYALHVGI-----TWWSDQVQQEMAELCEK-H-GVNSF 168 (592)
Q Consensus 98 ~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~~~~lv~~-~-Gv~~~ 168 (592)
..++++||||++++..... +..+.+.+.......+. ++++..+... ..+.....++++++... . ++.+|
T Consensus 72 ~~a~~~GvTt~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~vv~~ 149 (365)
T TIGR03583 72 EIGVKTGVTTVVDAGSTGA--DDIDDFYRLAQQAKTNVFALLNISRIGLVAQDELADLSNLDASAVKQAVERYPDFIVGL 149 (365)
T ss_pred HhhhcCceeEEEeCCCCCC--CCHHHHHHHHHhhCCcEEEEeeehhccccChhhhhChHHhHHHHHHHHHHhCcCcEEEE
Confidence 4468899999998753222 22233333222222222 1222211111 12122344556655543 2 36788
Q ss_pred EEEEeeCCCc--CCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHH
Q psy6858 169 KTFMAYKGLY--MLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTI 246 (592)
Q Consensus 169 k~~~~~~~~~--~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~l 246 (592)
+.+|+..... .+++.++.+.+..+ +++.++.+|+++.........+...
T Consensus 150 ~~~~t~~~i~E~gl~~~~~~~~l~~~-~~~~pv~vH~~~a~~~~~~i~~~~~---------------------------- 200 (365)
T TIGR03583 150 KARMSKSVVGDNGIEPLEIAKQIQQE-NLELPLMVHIGSAPPELDEILALME---------------------------- 200 (365)
T ss_pred EEeecccccccCCcCHHHHHHHHHHh-cCCCcEEEEeCCCccCHHHHHHHhc----------------------------
Confidence 8888743222 23466666655444 6899999999874321111111111
Q ss_pred hcccCCCEEEEecccHHH----------HHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCcccccccceecCCC
Q psy6858 247 ANQVDCPLYVVHIMSKAA----------GDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPL 316 (592)
Q Consensus 247 a~~~~~pl~i~hv~s~~a----------~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~~~~~~~~~ppl 316 (592)
.+ ..++|+.+... .+.+..+... |+ ..+..+-..
T Consensus 201 ---~g--~~~~H~fng~~~~~~r~~g~~~~~~~~~l~~----G~-------------i~d~~hg~~-------------- 244 (365)
T TIGR03583 201 ---KG--DVLTHCFNGKPNGILRETGEVKPSVLEAYNR----GV-------------ILDVGHGTA-------------- 244 (365)
T ss_pred ---CC--CeeeeeecCCCCCCCCCcchHHHHHHHHHhC----eE-------------EEEeCCCCC--------------
Confidence 11 12345443221 1222222223 44 122111000
Q ss_pred CCCCCCHHHHHHHHhcCC-ceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhH
Q psy6858 317 RPDETTPTHLLTLLNENA-LQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTST 395 (592)
Q Consensus 317 r~~~~~~~~l~~~l~~G~-~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~ 395 (592)
+........+...+. +.+.++|.. ..+..+|....+...+++++. .+++++++++++|.
T Consensus 245 ---~~~~~~~~~~~~~~~~~~td~~d~~----------------~~~~~~gp~~~l~~~~~~~~~-~g~~~~ea~~~~t~ 304 (365)
T TIGR03583 245 ---SFSFHVAEKAKRAGIFPDTISTDIY----------------IRNRINGPVYSLATVMSKFLA-LGYSLEEVIEKVTK 304 (365)
T ss_pred ---CchHHHHHHHHhCCCCCcccccccc----------------cCCCccCccccHHHHHHHHHH-cCCCHHHHHHHHHH
Confidence 001111222333332 233333321 112234545556777777764 57999999999999
Q ss_pred hHHHHcCCCCCCccccCCCCccEEEEeCCceE-EecCCcccccCCCCcccCeEEee----eeeEEEECCEEE
Q psy6858 396 NAAKIFNLYPKKGVIAEGSDADIVVWNYKAKR-TISAKTHAHACDYNIFEGLVCHG----VPEYVIVGGRVC 462 (592)
Q Consensus 396 n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~-~i~~~~~~~~~~~~~~~g~~~~g----~~~~Viv~GkvV 462 (592)
|||++||+. ++|+|++|++|||++||.+... .+.. ..|-+..+ .|..|+.+|++.
T Consensus 305 npa~~~gl~-~~g~i~~g~~ad~~~~~~~~~~~~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~ 364 (365)
T TIGR03583 305 NAAEILKLT-QKGRLQEGYDADLTIFTVKAEPKKLTD-----------SEGDSRIAEEQIKPLAVIIGGEYY 364 (365)
T ss_pred HHHHHhCCC-CCCCcCCCCcccEEEEecCCCCceeec-----------CCCCEEEeccccceEEEEECCEEe
Confidence 999999994 5899999999999999985322 1111 12223333 567888888864
No 92
>cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor. FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen.
Probab=99.95 E-value=2.7e-25 Score=238.01 Aligned_cols=405 Identities=19% Similarity=0.224 Sum_probs=223.6
Q ss_pred EEccEEEcCCCc---eeeEEEEECCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCccccc--C-CC---------
Q psy6858 23 IKNGKVVNADKI---SDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELEL--M-GA--------- 87 (592)
Q Consensus 23 Ikng~Iv~~d~~---~~~dV~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~--~-~~--------- 87 (592)
|+|++|+++... ..++|+|+||+|++|++.. .+.++||++|++|||||||+|+|+.... . ..
T Consensus 1 Ikng~V~d~~~~~~~~~~dI~IedGkIv~Vg~~~---~~~~vID~~G~~VmPGfID~HtH~~gg~~~~~r~~~pe~~~~~ 77 (541)
T cd01304 1 IKNGTVYDPLNGINGEKMDIFIRDGKIVESSSGA---KPAKVIDASGKVVMAGGVDMHSHIAGGKVNVGRILRPEDHRRD 77 (541)
T ss_pred CEEEEEEcCCCcccccccEEEEECCEEEEEccCC---CCCeEEECCCCEEECCeeeeeeCccccccccccccChhhhhcc
Confidence 689999997543 4689999999999998743 2458999999999999999999985321 1 11
Q ss_pred --------------CChhhHHHHHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhc--cCceeeeecc-ccccCCCh
Q psy6858 88 --------------TSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKAD--EKVCCDYALH-VGITWWSD 150 (592)
Q Consensus 88 --------------~~~d~~~~~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~-~~~~~~~~ 150 (592)
..+..+..|.+.| .-|.||+++...+.. ....+-+++..... ..+..-++.. +......+
T Consensus 78 ~~~~~~~~~~~~g~~~pst~~tgy~ya-~mGytt~~e~a~~p~--~a~h~h~e~~~~p~~d~~~~~~~gnn~~~~~~~~~ 154 (541)
T cd01304 78 PVPKGALRRAGVGFSVPSTLATGYRYA-EMGYTTAFEAAMPPL--NARHTHEEMADTPILDKGAYPLLGNNWFVLEYLRD 154 (541)
T ss_pred ccccccccccCCCccCCCchHhhhHHH-hcCcceeecccCCcc--cchhhhHHhccCccccccceEEecchHHHHHHHhc
Confidence 2223333444443 468888888765543 22233333332211 1111112111 11111111
Q ss_pred HHHHHHHHHHHH----cCCcEEEEEE----------------e-eCCCcCCCHHH-HHHHHHHHHHcCCeEEEecCchhh
Q psy6858 151 QVQQEMAELCEK----HGVNSFKTFM----------------A-YKGLYMLSDGE-LYDAFSAIKNLGAIAMVHAENGEI 208 (592)
Q Consensus 151 ~~~~~~~~lv~~----~Gv~~~k~~~----------------~-~~~~~~~~~~~-l~~~~~~a~~~g~~~~vHae~~~~ 208 (592)
...+.+..++.+ -..-.+|+.- . ..-.+.+++.+ +..+.+.+.++|++..+|..-..
T Consensus 155 ~~~~~~~~~vaw~l~~tk~~giK~vnpgG~~a~~~~~~~~~~d~~~~~~~vtp~~ii~~l~~~~~~lg~ph~iH~h~nn- 233 (541)
T cd01304 155 GDMEKLAAYVAWTLKASKGYGIKVVNPGGTEAWGWGQNVLSLDDPVPYFDITPREILKGLAEANEELGLPHSIHVHCNN- 233 (541)
T ss_pred CCHHHHHHHHHHHHHhccceEEEEECCCchhhhccCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcccc-
Confidence 123333443322 1122333321 0 01125677777 55566777788988777743211
Q ss_pred hHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCC-----CEEEEecc--c---------HHHHHHHHHHH
Q psy6858 209 IDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDC-----PLYVVHIM--S---------KAAGDAMAYKR 272 (592)
Q Consensus 209 i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~-----pl~i~hv~--s---------~~a~~~i~~ar 272 (592)
+| .|-.. +.+...+.+++.... .+|++|+. + .++++.|+.+.
T Consensus 234 ----------lg----------~pgn~--~~t~~t~~~~~~~~~~~~~~~~h~tH~qfhsyg~~~~~~~~s~a~~i~~~~ 291 (541)
T cd01304 234 ----------LG----------VPGNY--ETTLETMKAAEGVKPDPRRQVLHLTHVQFHSYGGTSWRDFESGAERIADYV 291 (541)
T ss_pred ----------CC----------CCCcH--HHHHHHHHHhhcCCCccccceeEeeeeeEEeeccCCcccHhHHHHHHHHHH
Confidence 11 22222 334566777765554 58999996 1 34566666666
Q ss_pred HHHHhcCCceeeeeeccccee------ecCC------CCCCCc-ccccccc-----eecCCCC-CCCCCHHHH-------
Q psy6858 273 KELMKKGKHCTLYGETLAAAV------GTHA------NQIPCT-WHDQAAH-----VLSPPLR-PDETTPTHL------- 326 (592)
Q Consensus 273 ~~~~~~G~~~~v~~e~~~~~l------~~d~------~~~~~~-~~~~~~~-----~~~pplr-~~~~~~~~l------- 326 (592)
.. +. .|+.......+ ..|+ ...... |.....- ... |+. ...+...+|
T Consensus 292 n~----~~--~it~D~G~v~f~~t~tmt~d~~~~~~~~~~~~~kw~~~d~e~e~g~Gvv-p~~y~~k~~v~~lqwaiglE 364 (541)
T cd01304 292 NA----ND--HVTIDVGQVIFGETTTMTGDGPMQFDLHGLTGLKWVNCDIELETGSGVV-PFIYSPKNPVNALQWAIGLE 364 (541)
T ss_pred Hc----CC--CEEEEeCceecCCcEEEEccchhhcccccccCCceeeeeeEeccCCceE-EeEecCCCCchHHHHHHHHH
Confidence 55 54 44443332211 1111 111111 3322110 111 333 113333333
Q ss_pred HHHHhcCC-ceEEeCCCC---CCChhhhhcCCCCCCcCCCCCcchhhHHHHH---HHhh-------ccCCCCCHHHHHHH
Q psy6858 327 LTLLNENA-LQTTGSDNC---TFNKNQKELGKDSFTHIPNGVNGVQDRLSVI---WEKG-------VVPGILSPEKFVAV 392 (592)
Q Consensus 327 ~~~l~~G~-~~~~gsD~~---~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~---~~~~-------v~~~~l~~~e~v~~ 392 (592)
+.++-... .+.+.|||. ||...-+.+.. +-.-+.|...+ .... --...+++++++++
T Consensus 365 l~ll~~dp~~~~~tTDhPn~gpf~~YP~~i~~---------lm~~~~r~~~~~~~~~~~~~~~~l~~~~reLSLeei~~m 435 (541)
T cd01304 365 LFLLIDDPWKVILTTDHPNGGPFTRYPRIIAW---------LMSKKFRAEEIATLHKWAQDRSALPGIDREYSLYEIAIM 435 (541)
T ss_pred HHHHhCCcceEEeecCCCCCCCcccHHHHHHH---------HhCHHHHHHHHHhcCHHHHhhccccCCCCCCCHHHHHHH
Confidence 11233344 789999985 33332211100 00001122111 1100 12345799999999
Q ss_pred HhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEEECCEEEEECCeeeecC
Q psy6858 393 TSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQ 472 (592)
Q Consensus 393 ~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv~GkvV~~~g~l~~~~ 472 (592)
+|.||||+||+. ++|+|++|++|||+|+|++.. ++..+.+.+ -....|+|..||++|++|+++|++...
T Consensus 436 tT~nPAKiLGL~-~kG~L~~G~~ADLvIfD~n~~-~v~~~dl~s--------~~~~~gkV~~Tiv~GkvVv~dGeiv~~- 504 (541)
T cd01304 436 TRAGPAKLLGLS-DKGHLGVGADADIAIYDDDPD-QVDPSDYEK--------VEKAFSRAAYVLKDGEIVVKDGEVVAE- 504 (541)
T ss_pred HHHHHHHHhCCC-CCCccCCCCcCCEEEEeCCcC-ccCchhhcC--------ceeecCcEEEEEECCEEEEECCEEccC-
Confidence 999999999994 689999999999999999865 444332221 146778899999999999999998754
Q ss_pred CCceeecCCCC
Q psy6858 473 GQGNYLPTHTN 483 (592)
Q Consensus 473 g~g~~~~~~~~ 483 (592)
..|+.+-..+-
T Consensus 505 ~~G~~l~~~~~ 515 (541)
T cd01304 505 PWGRTYWVDVE 515 (541)
T ss_pred CCCcEEEEecc
Confidence 37888776543
No 93
>TIGR03121 one_C_dehyd_A formylmethanofuran dehydrogenase subunit A. Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably.
Probab=99.95 E-value=1.3e-25 Score=241.48 Aligned_cols=406 Identities=21% Similarity=0.277 Sum_probs=218.1
Q ss_pred EEEEccEEEcCCCce---eeEEEEECCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCcccc--cCCC-CChhhHH
Q psy6858 21 LLIKNGKVVNADKIS---DLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELE--LMGA-TSVDDFY 94 (592)
Q Consensus 21 llIkng~Iv~~d~~~---~~dV~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~--~~~~-~~~d~~~ 94 (592)
++|+|++|+++.... .++|+|+||+|++|++... .+.++||++|++|||||||+|+|+..+ +++. ..++++.
T Consensus 2 ~iIkng~I~dp~~~~~~~~~dI~IedGkIveIg~~~~--~~~eVIDa~G~vVmPGfID~HvHg~gG~~~~~R~~~pE~~~ 79 (556)
T TIGR03121 2 ILIKNGTVYDPANGIDGEVMDIFIRDGKIVEPVSGGT--KPAKVIDASGKLVMAGGVDSHTHIAGPKVNVGRLLRPEDHR 79 (556)
T ss_pred EEEEeEEEEcCCCCccccccEEEEECCEEEEecCCCC--CCCeEEECCCCEEEeCEEeeeECCCccccccccccCHHHHh
Confidence 689999999985432 4799999999999986543 245899999999999999999999753 2221 2344333
Q ss_pred H----------------------HHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhc--cCceeeeecc-ccccCCC
Q psy6858 95 H----------------------GTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKAD--EKVCCDYALH-VGITWWS 149 (592)
Q Consensus 95 ~----------------------~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~-~~~~~~~ 149 (592)
. .....++.|+||++|+..+.. ....+-+++..... ..+..-++.. +......
T Consensus 80 ~~~~~~~~~~r~Gtt~~lPTt~tt~y~ya~mGyTt~~eaa~~p~--~arh~h~e~~~~p~~d~~~~~~~gnn~~~~~~~~ 157 (556)
T TIGR03121 80 RDPEPRTGLTRAGSGFSVPSTYATGYRYARMGYTTVFEAAVPPL--NARHTHEEFADTPILDKGGYTLLGNNWFLLEYLK 157 (556)
T ss_pred hcchhhhhhcCCCcceEehhHhHHHHHHHhCCccEEecCCCCcc--chhhhHHHhccCccccccceEEecchHHHHHHHh
Confidence 2 223456789999999876543 22333333332211 1111222211 1111111
Q ss_pred hHHHHHHHHHHHH----cCCcEEEEEE----------------e-eCCCcCCCHHHHH-HHHHHHHHcCCeEEEe--cCc
Q psy6858 150 DQVQQEMAELCEK----HGVNSFKTFM----------------A-YKGLYMLSDGELY-DAFSAIKNLGAIAMVH--AEN 205 (592)
Q Consensus 150 ~~~~~~~~~lv~~----~Gv~~~k~~~----------------~-~~~~~~~~~~~l~-~~~~~a~~~g~~~~vH--ae~ 205 (592)
+...+++..++.+ -..-.+|+.- . ..-.+.+++.++. .+.+...++|++-.+| +.|
T Consensus 158 ~~~~~~~~~~vaw~l~~tk~~giK~vnpgG~~a~~~~~~~~~~d~~~~~~~vtp~~i~~~l~~~~e~l~lph~~h~H~nn 237 (556)
T TIGR03121 158 DGEPEKAAAYVAWLLKATKGYGIKVVNPGGVEAWGWGENVLSLDDPVPYFGITPREIIKGLARANEELGLPHSIHVHCNN 237 (556)
T ss_pred cCCHHHHHHHHHHHHHhccceEEEEECCCchhhhccCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEecCC
Confidence 1123334443322 1112333321 0 0112567887755 4555666788875554 444
Q ss_pred hhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCC------EEEEecc-------c----HHHHHHH
Q psy6858 206 GEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCP------LYVVHIM-------S----KAAGDAM 268 (592)
Q Consensus 206 ~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~p------l~i~hv~-------s----~~a~~~i 268 (592)
+|..| .. +.....+++++ |.| +|++|+. + ...++.|
T Consensus 238 -------------lg~pg----------n~--~~t~~t~~~~~--g~~~~~~~~~h~tH~qf~syg~~~~~~f~s~a~~~ 290 (556)
T TIGR03121 238 -------------LGVPG----------NY--ETTLDTLDAAE--GVKPNRNQVLHLTHVQFHSYGGTSWRDFESGAEKI 290 (556)
T ss_pred -------------CCCCC----------ch--HHHHHHHHHhc--CCCCCccceeEeeeeeeeccCCCCCCCcchhHHHH
Confidence 12222 22 22233455544 555 8999996 1 1223333
Q ss_pred HHHHHH----HHhcCCceeeeeecccceeecCC------CCCC-Ccccccc-----cceecCCCC-CCCCCHHHHHH---
Q psy6858 269 AYKRKE----LMKKGKHCTLYGETLAAAVGTHA------NQIP-CTWHDQA-----AHVLSPPLR-PDETTPTHLLT--- 328 (592)
Q Consensus 269 ~~ar~~----~~~~G~~~~v~~e~~~~~l~~d~------~~~~-~~~~~~~-----~~~~~pplr-~~~~~~~~l~~--- 328 (592)
..+-.+ .++.|. +.++|+..... |+ ..+. .+|.... +.... |+. ...+...+|.-
T Consensus 291 a~~vn~~~~~t~d~Gq--v~fg~t~tmt~--d~~~~~~~~~~~~~kw~~~d~e~e~g~gvv-p~~y~~~~~v~~~qwaig 365 (556)
T TIGR03121 291 ADYVNANPNVTIDVGQ--VTFGETTTMTA--DGPMEYDLHKLTGLKWANKDVELETGSGVV-PFKYSPKNPVHALQWAIG 365 (556)
T ss_pred HHHHhcCCCEEEEeCc--eecCCceEEec--cchhhhhcccCCCCceeeeeeecccCCceE-EeeecCCCcchHHHHHHh
Confidence 333222 112244 45555542221 11 1111 1143321 11111 332 11233323221
Q ss_pred ----HHhcC-CceEEeCCCCCCChhhhhcCCCCCCcCCCCCc---chhhHHHHH---HHhh-------ccCCCCCHHHHH
Q psy6858 329 ----LLNEN-ALQTTGSDNCTFNKNQKELGKDSFTHIPNGVN---GVQDRLSVI---WEKG-------VVPGILSPEKFV 390 (592)
Q Consensus 329 ----~l~~G-~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~---g~e~~~~~~---~~~~-------v~~~~l~~~e~v 390 (592)
+|..+ -.+.+.|||.--. +|+.-|.-+. .-+.|...+ .... --...++++|++
T Consensus 366 lel~Ll~~dp~~~~~ttDhPngg---------pf~~YP~ii~~lm~~~~r~~~~~~~~~~~~~~~~l~~~~Re~sL~EI~ 436 (556)
T TIGR03121 366 LELFLLIKDPWRVFLTTDHPNGG---------PFTRYPRIIALLMSRKYREDMLSTVHPWAAARSTLGGIDREYSLYEIA 436 (556)
T ss_pred hHHHHhcCCcceeEEeccCCCCC---------cccchHHHHHHHcCHHHHHHHHHhcCHHHHhhcccccccCCCCHHHHH
Confidence 22222 3688899985211 2332221110 011121111 1111 134678999999
Q ss_pred HHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEEECCEEEEECCeeee
Q psy6858 391 AVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRV 470 (592)
Q Consensus 391 ~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv~GkvV~~~g~l~~ 470 (592)
+++|.||||+||+ +++|+|++|++|||+|||.+.....+ .++.++ ...+.+.+||++|++|++||++..
T Consensus 437 ~mtTanPAkaLGL-~dkG~L~pGa~ADIaI~D~~~~~~~~--------~~~~v~--~~~~~v~~Tik~G~vV~~dGei~~ 505 (556)
T TIGR03121 437 IMTRAGPAKLLGL-TDRGHLGVGADADIAVYDINPDDVDT--------DYADVE--KAFSTALYVFKDGEIVVKDGEIVE 505 (556)
T ss_pred HHHHHHHHHHhCC-CCCCCcCCCCcCCEEEEeCcccccCC--------chHHHh--hccCCccEEEECCEEEEECCEEcc
Confidence 9999999999999 56899999999999999987443311 122222 223578999999999999999976
Q ss_pred cCCCceeecCCCC
Q psy6858 471 AQGQGNYLPTHTN 483 (592)
Q Consensus 471 ~~g~g~~~~~~~~ 483 (592)
.. .|+++-..+.
T Consensus 506 ~~-~G~~~~~~~~ 517 (556)
T TIGR03121 506 TP-WGRTYWVDAK 517 (556)
T ss_pred CC-CCcEEEEecc
Confidence 54 7888876644
No 94
>cd01307 Met_dep_hydrolase_B Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.95 E-value=5.5e-26 Score=238.25 Aligned_cols=295 Identities=20% Similarity=0.171 Sum_probs=186.9
Q ss_pred EEEEECCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCcccccCCCCChhhHHHHHHHHHcCCeeEEeccccCCCC
Q psy6858 38 DIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKG 117 (592)
Q Consensus 38 dV~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~~~~~d~~~~~~~~ala~GtTti~d~~~~~~~ 117 (592)
||+|+||+|++|+++...+.+.++||++|++|+|||||+|+|+..+... ....++++|+++|+||++|+..+..
T Consensus 1 ~i~i~~g~I~~i~~~~~~~~~~~~id~~g~~v~PG~iD~H~H~~~~g~~-----~~~~~~~~a~~~GvTtvvd~~~~~~- 74 (338)
T cd01307 1 DVAIENGKIAAVGAALAAPAATQIVDAGGCYVSPGWIDLHVHVYQGGTR-----YGDRPDMIGVKSGVTTVVDAGSAGA- 74 (338)
T ss_pred CEEEECCEEEEccCCCCCCCCCeEEECCCCEEecCeEEeeecCCCCCcc-----cCCCHhHHHHcCceeEEEeCCCCCC-
Confidence 6899999999999875544457999999999999999999999876532 2234788999999999999974333
Q ss_pred ccHHHH-HHHHHHHhcc--CceeeeeccccccC--CCh---HHHHHHHHHHHH--cCCcEEEEEEeeCCCcCCCHHHHHH
Q psy6858 118 ESLIKT-YESWRQKADE--KVCCDYALHVGITW--WSD---QVQQEMAELCEK--HGVNSFKTFMAYKGLYMLSDGELYD 187 (592)
Q Consensus 118 ~~~~~a-~~~~~~~~~~--~~~~~~~~~~~~~~--~~~---~~~~~~~~lv~~--~Gv~~~k~~~~~~~~~~~~~~~l~~ 187 (592)
..... ++.....+.. .++++|+++..... +.+ ...+++.++..+ .|+.+||+++..+.........+.+
T Consensus 75 -~~~~~~~~~~~~~~~~~v~a~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~e~~~gi~gik~~~~~~~~~~~~~~~l~~ 153 (338)
T cd01307 75 -DNIDGFRYTVIERSATRVYAFLNISRVGLVAQDELPDPDNIDEDAVVAAAREYPDVIVGLKARASKSVVGEWGIKPLEL 153 (338)
T ss_pred -CCHHHHHHHHHHhhhceEEEEEeeeccccccccccCChhHCCHHHHHHHHHHCcCcEEEEEEEeecccccccCCcHHHH
Confidence 33343 4444344444 45677777654321 111 123344444433 5889999998755433334445889
Q ss_pred HHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCEEEEecccHHH---
Q psy6858 188 AFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIMSKAA--- 264 (592)
Q Consensus 188 ~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~i~hv~s~~a--- 264 (592)
.++.++++|+++.+|+++.......... +.+. + ..++|+.....
T Consensus 154 ~~~~a~~~~~pi~vH~~~~~~~~~~~~~------------------------------~l~~-g--~~~~H~~~g~~~~~ 200 (338)
T cd01307 154 AKKIAKEADLPLMVHIGSPPPILDEVVP------------------------------LLRR-G--DVLTHCFNGKPNGI 200 (338)
T ss_pred HHHHHHHcCCCEEEEeCCCCCCHHHHHH------------------------------HhcC-C--CEEEeccCCCCCCC
Confidence 9999999999999999875422111111 1111 1 12344443221
Q ss_pred -------HHHHHHHHHHHHhcCCceeeeeecccceeecCCC-CCCCcccccccceecCCCCCCCCCHHHHHHHHhcCC-c
Q psy6858 265 -------GDAMAYKRKELMKKGKHCTLYGETLAAAVGTHAN-QIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENA-L 335 (592)
Q Consensus 265 -------~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~-~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~-~ 335 (592)
.+.+..+.++ |+ . .|-. .... .+.....++++.|. .
T Consensus 201 ~~~~~~~~~~~~~~~~~----G~--~-----------~d~~~G~~~------------------~~~~~~~~l~~~G~~~ 245 (338)
T cd01307 201 VDEEGEVLPLVRRARER----GV--I-----------FDVGHGTAS------------------FSFRVARAAIAAGLLP 245 (338)
T ss_pred CCCCCcHHHHHHHHHhC----CE--E-----------EEeCCCCCc------------------hhHHHHHHHHHCCCCC
Confidence 2333444444 66 1 1100 0000 01112335677886 4
Q ss_pred eEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCC
Q psy6858 336 QTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSD 415 (592)
Q Consensus 336 ~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ 415 (592)
.++++|...... . ++-...+..+++++ ...+++++++++++|.|||++|++ +++|+|++|+.
T Consensus 246 ~~lstD~~~~~~---------~-------~~p~~~l~~~l~~l-~~~gi~~ee~~~~~T~NpA~~lgl-~~~G~l~~G~~ 307 (338)
T cd01307 246 DTISSDIHGRNR---------T-------NGPVYALATTLSKL-LALGMPLEEVIEAVTANPARMLGL-AEIGTLAVGYD 307 (338)
T ss_pred eeecCCccccCC---------C-------CCccccHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHcCC-CCCCccCCCCc
Confidence 678998732110 0 11123334444444 235799999999999999999999 77999999999
Q ss_pred ccEEEEeCCc
Q psy6858 416 ADIVVWNYKA 425 (592)
Q Consensus 416 ADlVv~d~~~ 425 (592)
|||+||+.+.
T Consensus 308 ad~~v~~~~~ 317 (338)
T cd01307 308 ADLTVFDLKD 317 (338)
T ss_pred CCEEEEeCCC
Confidence 9999999773
No 95
>COG1001 AdeC Adenine deaminase [Nucleotide transport and metabolism]
Probab=99.95 E-value=2.6e-25 Score=235.69 Aligned_cols=329 Identities=25% Similarity=0.341 Sum_probs=216.8
Q ss_pred ccccEEEEccEEEcC--CCceeeEEEEECCEEEE-eecCCCCCCCCeEEecCCCEEeeCccccCcCcccccCCCCChhhH
Q psy6858 17 SQNRLLIKNGKVVNA--DKISDLDIYIENGVIQQ-LGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELELMGATSVDDF 93 (592)
Q Consensus 17 ~~~~llIkng~Iv~~--d~~~~~dV~I~dG~I~~-Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~~~~~d~~ 93 (592)
+..+++++||+|+|. .+.+.+||.|.+|+|+. +++.. .++.++||+.|++|.|||||.|.|+..+. .++..|
T Consensus 22 ~~adlv~~ng~ivdv~~gei~~~dIaI~~grI~~v~~~~~--~e~~~~iDa~g~yivPGfID~H~HIESSm---~tP~~F 96 (584)
T COG1001 22 AKADLVLKNGRIVDVVTGEIYKGDIAIAGGRIVGVIGEYR--AEATEVIDAAGRYIVPGFIDAHLHIESSM---LTPSEF 96 (584)
T ss_pred CCCCEEEECCEEEEeeeccEEeeeEEEECCEEEEeecCcC--cccceeecCCCCEeccceeecceeccccc---cCHHHH
Confidence 468999999999996 46678999999999999 45433 45889999999999999999999998763 567777
Q ss_pred HHHHHHHHcCCeeEEecccc---CCCCccHHHHHHHHHHHhccCceeeeeccccccCCCh----HHHHHHHHHHHHcCCc
Q psy6858 94 YHGTKAAVAGGTTTIIDFAL---PRKGESLIKTYESWRQKADEKVCCDYALHVGITWWSD----QVQQEMAELCEKHGVN 166 (592)
Q Consensus 94 ~~~~~~ala~GtTti~d~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~lv~~~Gv~ 166 (592)
+++.+..||||++.-.. --.|..-...+..-.+....+.++.....+..+.+.. -..+++.++..+..+-
T Consensus 97 ---A~~Vlp~GtTtvV~DPHEIaNV~G~~Gi~~ml~~a~~~pl~~~~~~pScVPat~~Et~Ga~l~a~~i~e~~~~p~Vi 173 (584)
T COG1001 97 ---ARAVLPHGTTTVVSDPHEIANVLGEDGIRFMLDEAKETPLKVYVMLPSCVPATPFETSGAELTAEDIKELLEHPEVI 173 (584)
T ss_pred ---HHHhhccCceEEeeCcHHHHhhccHHHHHHHHHHHhhCCeEEEEecccCccCCccccCCceecHHHHHHHhhCCCcc
Confidence 88889999999973210 0112222222222212122222222222222221111 1356788888888888
Q ss_pred EEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHH
Q psy6858 167 SFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTI 246 (592)
Q Consensus 167 ~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~l 246 (592)
++..+|.|.+... .|+++...++.+++.|.++..|+..-. ......+...|+.. -|...++||+
T Consensus 174 gl~E~Mn~pgVi~-~D~~~l~kl~a~~~~~k~VdGHapgl~--g~~Ln~Y~aaGi~t--DHE~~t~EEa----------- 237 (584)
T COG1001 174 GLGEMMNFPGVIE-GDPDMLAKLEAARKAGKPVDGHAPGLS--GKELNAYIAAGIST--DHESTTAEEA----------- 237 (584)
T ss_pred chhhhcCCchhcc-CCHHHHHHHHHHHHcCCeecccCCCCC--hHHHHHHHhcCCCc--CcccCCHHHH-----------
Confidence 8889999888764 566777778899999999999987643 34455566666654 3444443322
Q ss_pred hcccCCCEEEEecccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCcccccccceecCCCCCCCCCHHHH
Q psy6858 247 ANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHL 326 (592)
Q Consensus 247 a~~~~~pl~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr~~~~~~~~l 326 (592)
++++|. |+ .+.. ..|+. ..+...+
T Consensus 238 ---------------------~~klr~-----Gm--~i~i--------ReGS~--------------------a~dl~~l 261 (584)
T COG1001 238 ---------------------LEKLRL-----GM--KIMI--------REGSA--------------------AKDLAAL 261 (584)
T ss_pred ---------------------HHHHhC-----Cc--EEEE--------EcCch--------------------hhhHHHH
Confidence 222221 55 1100 00110 1223344
Q ss_pred HHHHhc-C-CceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHHHcCCC
Q psy6858 327 LTLLNE-N-ALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLY 404 (592)
Q Consensus 327 ~~~l~~-G-~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~lgl~ 404 (592)
...+.. | ..+++.||....+.... +..|..+..++++ .+++|-++++|+|.|||+.||++
T Consensus 262 ~~~i~e~~~~~~~lcTDD~~p~dl~~-----------------eGhld~~vR~Ai~-~Gv~p~~a~qmAtiN~A~~~gl~ 323 (584)
T COG1001 262 LPAITELGSRRVMLCTDDRHPDDLLE-----------------EGHLDRLVRRAIE-EGVDPLDAYQMATINPAEHYGLD 323 (584)
T ss_pred HHHHhhcCCceEEEECCCCChhHhhh-----------------cCCHHHHHHHHHH-cCCCHHHHHHHHhcCHHHHcCCc
Confidence 444433 3 34777888755442211 3345555555554 56899999999999999999995
Q ss_pred CCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEEECCEEEEECCe
Q psy6858 405 PKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGN 467 (592)
Q Consensus 405 ~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv~GkvV~~~g~ 467 (592)
++|.|+||..||||+++.-... ++..|+++|++|.++|+
T Consensus 324 -~~G~iAPG~~ADlvi~~DL~~~-----------------------~v~~V~~~G~~v~~~g~ 362 (584)
T COG1001 324 -DLGLIAPGRRADLVILEDLRNF-----------------------KVTSVLIKGRVVAEDGK 362 (584)
T ss_pred -ccccccCCccccEEEEcccccC-----------------------ceeEEEECCEEEecCCc
Confidence 5999999999999999843111 56799999999999997
No 96
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.94 E-value=1.2e-25 Score=236.27 Aligned_cols=294 Identities=19% Similarity=0.154 Sum_probs=171.9
Q ss_pred CeEEecCCCEEeeCccccCcCcccccCCCCC----hhhHH-----HHHHHHHcCCeeEEeccccCCCCccHHHHHHHHHH
Q psy6858 59 VRVIDAAGSYVIPGGIDPHTHFELELMGATS----VDDFY-----HGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQ 129 (592)
Q Consensus 59 ~~vIDa~G~~V~PG~ID~HtH~~~~~~~~~~----~d~~~-----~~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~ 129 (592)
+++||++|++|||||||+|+|+..+...... .+++. ..++.+|++|||||+|+....... +.+++.....
T Consensus 1 ~~vID~~g~~v~PGliD~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~g~~~~~~-~~~~~~~g~~ 79 (342)
T cd01299 1 AQVIDLGGKTLMPGLIDAHTHLGSDPGDLPLDLALPVEYRTIRATRQARAALRAGFTTVRDAGGADYGL-LRDAIDAGLI 79 (342)
T ss_pred CcEEeCCCCEECCCeeeeeeeccccCCCccccccCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCcchHH-HHHHHHcCCc
Confidence 4789999999999999999999664322111 12222 577889999999999986543221 2222222111
Q ss_pred -----------HhccCceeeeec---------cccccCCChHHHHHHHHHHHHcCCcEEEEEEeeCC--------CcCCC
Q psy6858 130 -----------KADEKVCCDYAL---------HVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKG--------LYMLS 181 (592)
Q Consensus 130 -----------~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~lv~~~Gv~~~k~~~~~~~--------~~~~~ 181 (592)
......++++.+ +.......++..++++++.+ .|++.+|+|+.+.. ...++
T Consensus 80 ~gPr~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~G~~~iK~~~~g~~~~~~~~~~~~~~~ 158 (342)
T cd01299 80 PGPRVFASGRALSQTGGHGDPRGLSGLFPAGGLAAVVDGVEEVRAAVREQLR-RGADQIKIMATGGVLSPGDPPPDTQFS 158 (342)
T ss_pred cCCceeecchhhcccCCCCccccccccccccCCcceecCHHHHHHHHHHHHH-hCCCEEEEeccCCcCCCCCCCcccCcC
Confidence 011112222221 11122234456677777775 49999999986421 12578
Q ss_pred HHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCEEEEeccc
Q psy6858 182 DGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIMS 261 (592)
Q Consensus 182 ~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~i~hv~s 261 (592)
++++.++++.|+++|+++.+|+.... ....+++.|+...+|.....+
T Consensus 159 ~e~l~~~~~~A~~~g~~v~~H~~~~~----~i~~~l~~G~~~i~H~~~~~~----------------------------- 205 (342)
T cd01299 159 EEELRAIVDEAHKAGLYVAAHAYGAE----AIRRAIRAGVDTIEHGFLIDD----------------------------- 205 (342)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHcCCCEEeecCCCCH-----------------------------
Confidence 99999999999999999999998643 333444555544333332221
Q ss_pred HHHHHHHHHHHHHHHhcCCceeeeeecccceeec----CCCCCCCcccccccceecCCCCCCCCCHHHHHHHHhcCCceE
Q psy6858 262 KAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGT----HANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQT 337 (592)
Q Consensus 262 ~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~----d~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~~ 337 (592)
+.++.+++. |+ .+. +++..... .....+..+... ... . .+ ......+..+++.|+.++
T Consensus 206 ----~~~~~l~~~----g~--~~~--~t~~~~~~~~~~~~~~~~~~~~~~-~~~--~-~~--~~~~~~~~~l~~~Gv~v~ 267 (342)
T cd01299 206 ----ETIELMKEK----GI--FLV--PTLATYEALAAEGAAPGLPADSAE-KVA--L-VL--EAGRDALRRAHKAGVKIA 267 (342)
T ss_pred ----HHHHHHHHC----Cc--EEe--CcHHHHHHHHhhccccCCCHHHHH-HHH--H-HH--HHHHHHHHHHHHcCCeEE
Confidence 223333333 54 221 11110000 000011100000 000 0 00 112345668899999999
Q ss_pred EeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCCcc
Q psy6858 338 TGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDAD 417 (592)
Q Consensus 338 ~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~AD 417 (592)
+|||....+.... .+...+.. ++ ..++++.++++++|.|+|++||+++++|+|++|+.||
T Consensus 268 ~GTD~~~~~~~~~---------------~~~~e~~~----~~-~~~~~~~~al~~~T~~~a~~~g~~~~~G~i~~G~~AD 327 (342)
T cd01299 268 FGTDAGFPVPPHG---------------WNARELEL----LV-KAGGTPAEALRAATANAAELLGLSDELGVIEAGKLAD 327 (342)
T ss_pred EecCCCCCCCchh---------------HHHHHHHH----HH-HhCCCHHHHHHHHHHHHHHHhCccCCcceECCCCcCC
Confidence 9999754111000 00111111 12 2457999999999999999999988899999999999
Q ss_pred EEEEeCCc
Q psy6858 418 IVVWNYKA 425 (592)
Q Consensus 418 lVv~d~~~ 425 (592)
|||||.+.
T Consensus 328 lvvl~~~p 335 (342)
T cd01299 328 LLVVDGDP 335 (342)
T ss_pred EEEECCCh
Confidence 99999874
No 97
>PRK06846 putative deaminase; Validated
Probab=99.94 E-value=1.2e-24 Score=234.07 Aligned_cols=335 Identities=12% Similarity=0.112 Sum_probs=190.4
Q ss_pred CceeeEEEEECCEEEEeecCCCC-CCCCeEEecCCCEEeeCccccCcCcccccCCCCCh---------------------
Q psy6858 33 KISDLDIYIENGVIQQLGRNLIV-PGGVRVIDAAGSYVIPGGIDPHTHFELELMGATSV--------------------- 90 (592)
Q Consensus 33 ~~~~~dV~I~dG~I~~Ig~~~~~-~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~~~~~--------------------- 90 (592)
.....+|.|+||+|.+|++.... +.+.++||++|++|+|||||+|+|+..++......
T Consensus 28 ~~~~~~i~i~~g~I~~i~~~~~~~~~~~~~id~~g~~v~Pg~iD~H~H~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 107 (410)
T PRK06846 28 ETALCTLEIQDGKIVAIRPNKQVPDATLPTYDANGLLMLPAFREMHIHLDKTYYGGPWKACRPAKTIQDRIELEQKELPE 107 (410)
T ss_pred ceeeEEEEEECCEEEEeecCCCCCCCCCceEeCCCCEEecCEEeeeecccchhhccchhhcCCcccHHHHHhhhhhhHHH
Confidence 34568999999999999986332 23568999999999999999999997644221100
Q ss_pred --hhHH----HHHHHHHcCCeeEEeccccCCCC--ccHHH----HHHHHHHHhccCceeeeeccccccCCChHHHHHHHH
Q psy6858 91 --DDFY----HGTKAAVAGGTTTIIDFALPRKG--ESLIK----TYESWRQKADEKVCCDYALHVGITWWSDQVQQEMAE 158 (592)
Q Consensus 91 --d~~~----~~~~~ala~GtTti~d~~~~~~~--~~~~~----a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (592)
+... .....+++.|||++++++...+. ....+ ++++++..... ..+.+..+. .......+.+++
T Consensus 108 ~~~~~~~~a~~~l~~~~~~Gtt~~r~~v~~~~~~~~~~~~a~~e~l~e~~~~v~~-~~~a~~~~g---~~~~~~~~lL~~ 183 (410)
T PRK06846 108 LLPTTQERAEKLIELLQSKGATHIRSHCNIDPVIGLKNLENLQAALERYKDGFTY-EIVAFPQHG---LLRSNSEPLMRE 183 (410)
T ss_pred hHHHHHHHHHHHHHHHHhCCccEEEEEEeeCcccccchHHHHHHHHHHhhCcceE-EEEeccCcc---cCCccHHHHHHH
Confidence 0111 22334456899999888743222 11122 23332221111 111111110 001222344555
Q ss_pred HHHHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHH
Q psy6858 159 LCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAE 238 (592)
Q Consensus 159 lv~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~e 238 (592)
..+ .|...++.+ .+......++++|.++++.|+++|+++.+|...... ... .
T Consensus 184 al~-~Ga~~i~gl-~p~~~~~~~~~~l~~~~~lA~~~g~~v~~Hv~e~~~--~~~------------------------~ 235 (410)
T PRK06846 184 AMK-MGAHLVGGV-DPASVDGAIEKSLDTMFQIAVDFNKGVDIHLHDTGP--LGV------------------------A 235 (410)
T ss_pred HHH-cCCCEEeCC-CCccCCcCHHHHHHHHHHHHHHhCCCcEEEECCCCC--hhH------------------------H
Confidence 554 476644422 333444567888999999999999999999654210 000 1
Q ss_pred HHHHHHHHhcccCC--CEEEEeccc------HHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCcccccccc
Q psy6858 239 AVTRACTIANQVDC--PLYVVHIMS------KAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAH 310 (592)
Q Consensus 239 av~~~i~la~~~~~--pl~i~hv~s------~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~~~~~~ 310 (592)
.+.+.+.+..+.+. ++.+.|+.. .+..++++.+++. |+ .|..-
T Consensus 236 ~~~~~~~~~~~~gl~~~v~~~H~~~l~~~~~~e~~~li~~la~~----g~--~v~~~----------------------- 286 (410)
T PRK06846 236 TIKYLVETTEEAQWKGKVTISHAFALGDLNEEEVEELAERLAAQ----GI--SITST----------------------- 286 (410)
T ss_pred HHHHHHHHHHHhCCCCCEEEEecchhhcCCHHHHHHHHHHHHHc----CC--eEEEe-----------------------
Confidence 11122223333332 788888864 2333335556666 87 44210
Q ss_pred eecCCCCCCCCCHHHHHHHHhcCCceEEeCCCCC--CChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHH
Q psy6858 311 VLSPPLRPDETTPTHLLTLLNENALQTTGSDNCT--FNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEK 388 (592)
Q Consensus 311 ~~~pplr~~~~~~~~l~~~l~~G~~~~~gsD~~~--~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e 388 (592)
.|+. .....+.++++.|+.+++|||... ++ |.|...+-..|.......-....-...+
T Consensus 287 ---~~~~---~g~~p~~~l~~~Gv~v~lGtD~~~~~~~--------------p~~~~d~~~~~~~~~~~~~~~~~~~~~~ 346 (410)
T PRK06846 287 ---VPIG---RLHMPIPLLHDKGVKVSLGTDSVIDHWS--------------PFGTGDMLEKANLLAELYRWSDERSLSR 346 (410)
T ss_pred ---CCCC---CCCCCHHHHHhCCCeEEEecCCCCCCCc--------------CCCCCCHHHHHHHHHHHhcCCCHHHHHH
Confidence 0000 011124478999999999999742 21 1111111222222211000011123467
Q ss_pred HHHHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEEECCEEEEEC
Q psy6858 389 FVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDE 465 (592)
Q Consensus 389 ~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv~GkvV~~~ 465 (592)
+++++|.+ |+.++++..+|+|++|+.|||||||.+....+ ......+..||++||+||..
T Consensus 347 ~l~~~T~~-a~~l~~~~~~G~l~~G~~ADlvlld~~~~~~~----------------~~~~~~v~~v~~~G~~v~~~ 406 (410)
T PRK06846 347 SLALATGG-VLPLNDEGERVWPKVGDEASFVLVDASCSAEA----------------VARQSPRTAVFHKGQLVAGS 406 (410)
T ss_pred HHHHHcCC-ccccccCCCccCCCCCCcccEEEEeCCChHHH----------------HHhcCCceEEEECCEEEeee
Confidence 89999988 46688877889999999999999998632111 11113678999999999975
No 98
>cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.94 E-value=8.6e-25 Score=232.13 Aligned_cols=342 Identities=13% Similarity=0.101 Sum_probs=192.4
Q ss_pred CEEEEeecCCCC---CCCCeEEecCCCEEeeCccccCcCcccccCC--------------------CCChhhHHH----H
Q psy6858 44 GVIQQLGRNLIV---PGGVRVIDAAGSYVIPGGIDPHTHFELELMG--------------------ATSVDDFYH----G 96 (592)
Q Consensus 44 G~I~~Ig~~~~~---~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~--------------------~~~~d~~~~----~ 96 (592)
|+|++||+.... .++.++||+.|++|||||||+|+|+.+..+. ..+.++.+. +
T Consensus 1 ~~I~aVG~~~~~~~~~~~~~v~d~~g~~v~PGlVnaH~H~~~~~~rg~~~~~~~~~wl~~~~~~~~~~~~e~~~~~a~~~ 80 (381)
T cd01312 1 DKILEVGDYEKLEKRYPGAKHEFFPNGVLLPGLINAHTHLEFSANVAQFTYGRFRAWLLSVINSRDELLKQPWEEAIRQG 80 (381)
T ss_pred CeEEEECChHHHHhhcCCCeEEecCCcEEecCccccccccchhccccccCCCchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 689999974321 2367899999999999999999999554221 122333333 3
Q ss_pred HHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccc-cccCCChHHHHHHHHHHHH--cCCcEEEEEEe
Q psy6858 97 TKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHV-GITWWSDQVQQEMAELCEK--HGVNSFKTFMA 173 (592)
Q Consensus 97 ~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lv~~--~Gv~~~k~~~~ 173 (592)
+..++++||||+.|+.... ...+++.+ ...++...+.+.. ....+.....+.++.+... .....++..++
T Consensus 81 ~~E~l~~G~Tt~~d~~~~~---~~~~a~~~----~GiR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 153 (381)
T cd01312 81 IRQMLESGTTSIGAISSDG---SLLPALAS----SGLRGVFFNEVIGSNPSAIDFKGETFLERFKRSKSFESQLFIPAIS 153 (381)
T ss_pred HHHHHHhCCeEEEEecCCH---HHHHHHHH----cCCcEEEEEeeECCCCchhhhhHHHHHHHHHHhhccCccceEEEEC
Confidence 3455789999999986421 12333322 2223333333211 0011111111112222111 12234677888
Q ss_pred eCCCcCCCHHHHHHHHHHHHHcCCeEEEecCch-hhhHHHHHH------HHHcCCCCCCCc-cCCCcHHHHHHHHHHHHH
Q psy6858 174 YKGLYMLSDGELYDAFSAIKNLGAIAMVHAENG-EIIDKNTQK------LLAAGIKGPEGH-QLSRPEEVEAEAVTRACT 245 (592)
Q Consensus 174 ~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~-~~i~~~~~~------~~~~G~~~p~~~-~~s~p~~~e~eav~~~i~ 245 (592)
++..+.++++.+.++++.|+++++++++|..+. ......... +.+. ....... .-.+|.+ .+.
T Consensus 154 p~a~~~~s~e~l~~~~~lA~~~g~~i~~Hl~E~~~e~~~~~~~~g~~~~~~~~-~~~~~~~~~g~~pv~--------~l~ 224 (381)
T cd01312 154 PHAPYSVHPELAQDLIDLAKKLNLPLSTHFLESKEEREWLEESKGWFKHFWES-FLKLPKPKKLATAID--------FLD 224 (381)
T ss_pred CCCCcccCHHHHHHHHHHHHHcCCeEEEEecCcHHHHHHHHHhccchhhHhhh-hcccccccCCCCHHH--------HHH
Confidence 888889999999999999999999999996543 221111100 0000 0000000 0011211 111
Q ss_pred HhcccCCCEEEEecccHHHHHHHHHHHHHHHhcCCceee-eeecccceeecCCCCCCCcccccccceecCCCCCCCCCHH
Q psy6858 246 IANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTL-YGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPT 324 (592)
Q Consensus 246 la~~~~~pl~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v-~~e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr~~~~~~~ 324 (592)
-....+-++.+.|+..-.. +.++.+++. |+ .+ ++......+ +. ..+|
T Consensus 225 ~~g~L~~~~~~~H~~~l~~-~~~~~l~~~----g~--~v~~~P~sn~~l-------------g~---g~~p--------- 272 (381)
T cd01312 225 MLGGLGTRVSFVHCVYANL-EEAEILASR----GA--SIALCPRSNRLL-------------NG---GKLD--------- 272 (381)
T ss_pred HcCCCCCCcEEEECCcCCH-HHHHHHHHc----CC--eEEECcchhhhh-------------cC---CCcC---------
Confidence 1233455777888775442 345556666 77 33 222111100 00 1123
Q ss_pred HHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHHHcCCC
Q psy6858 325 HLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLY 404 (592)
Q Consensus 325 ~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~lgl~ 404 (592)
+.++++.|+.+++|||....+....++ . +.++...+.+... ..+++.++++++|.|+|++||++
T Consensus 273 -~~~~~~~Gv~v~lGtD~~~~~~~~d~~-----~---------~~~~~~~~~~~~~-~~~~~~~~l~~aT~~gA~alg~~ 336 (381)
T cd01312 273 -VSELKKAGIPVSLGTDGLSSNISLSLL-----D---------ELRALLDLHPEED-LLELASELLLMATLGGARALGLN 336 (381)
T ss_pred -HHHHHHCCCcEEEeCCCCccCCCCCHH-----H---------HHHHHHHhccccc-ccCCHHHHHHHHHHHHHHHhCCC
Confidence 347999999999999975433211111 1 3444333322211 13678999999999999999994
Q ss_pred CCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEEECCE
Q psy6858 405 PKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGR 460 (592)
Q Consensus 405 ~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv~Gk 460 (592)
.|+|++|+.||||+||.+.+. .+ ..+++.-....+.|..||++||
T Consensus 337 --~Gsle~Gk~ADlvv~d~~~~~-~~--------~~~~~~~~~~~~~v~~v~v~G~ 381 (381)
T cd01312 337 --NGEIEAGKRADFAVFELPGPG-IK--------EQAPLQFILHAKEVRHLFISGK 381 (381)
T ss_pred --CCccCCCCcccEEEEeCCCcC-CC--------CccHHHHHHccCCCCEEEecCC
Confidence 899999999999999988541 11 1222222223457999999996
No 99
>cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.93 E-value=7.3e-24 Score=223.63 Aligned_cols=316 Identities=24% Similarity=0.263 Sum_probs=174.1
Q ss_pred CCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCcccccCCC-------------CC----h-hh---HHHHHHHHH
Q psy6858 43 NGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELELMGA-------------TS----V-DD---FYHGTKAAV 101 (592)
Q Consensus 43 dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~~-------------~~----~-d~---~~~~~~~al 101 (592)
||+|++|+++...+.+.++||++|++|+|||||+|+|++....+. .. . |. .......++
T Consensus 1 ~gkI~~i~~~~~~~~~~~vid~~g~~v~Pg~id~h~h~~~~~~~~~~~~~d~~e~~~~~~p~~~~~d~~~~~~~~~~~a~ 80 (359)
T cd01309 1 DGKIVAVGAEITTPADAEVIDAKGKHVTPGLIDAHSHLGLDEEGGVRETSDANEETDPVTPHVRAIDGINPDDEAFKRAR 80 (359)
T ss_pred CCEEEEEcCCCCCCCCCeEEeCCCCEEcCcEEecccccCccccCCCcCcCCccccCCCCCceeEeecccCCCCHhHHHHH
Confidence 799999999877777889999999999999999999997633211 00 0 00 113566788
Q ss_pred cCCeeEEeccccCCCC-----cc-HHHHHHH-HHHH-hccCceeeeeccccc-c-C----CCh----HHHHHHHHHH---
Q psy6858 102 AGGTTTIIDFALPRKG-----ES-LIKTYES-WRQK-ADEKVCCDYALHVGI-T-W----WSD----QVQQEMAELC--- 160 (592)
Q Consensus 102 a~GtTti~d~~~~~~~-----~~-~~~a~~~-~~~~-~~~~~~~~~~~~~~~-~-~----~~~----~~~~~~~~lv--- 160 (592)
++|||++.-. |..+ .+ +++.... +... ........+.+--.. . . ..+ .....+.+..
T Consensus 81 ~~GvT~~~v~--p~~~~~~gg~~~~i~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~~~~~~p~trmg~~~~lr~~~~~a 158 (359)
T cd01309 81 AGGVTTVQVL--PGSANLIGGQGVVIKTDGGTIEDMFIKAPAGLKMALGENPKRVYGGKGKEPATRMGVAALLRDAFIKA 158 (359)
T ss_pred hcCceEEEec--CCCCCcccceEEEEECCCCCHHHhcccCCceeEEecCCCCcccccccCCCccchHHHHHHHHHHHHHH
Confidence 9999999533 3221 11 0000000 0000 000111111110000 0 0 000 0000111111
Q ss_pred HHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHH
Q psy6858 161 EKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAV 240 (592)
Q Consensus 161 ~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav 240 (592)
++......+ +-.........+..+..++..++.. .++.+|+... ..+
T Consensus 159 ~~y~~~~~~-~~~~~~~~~~~d~~l~~l~~~~~~~-~~v~vHa~~~-------------------------------~~i 205 (359)
T cd01309 159 QEYGRKYDL-GKNAKKDPPERDLKLEALLPVLKGE-IPVRIHAHRA-------------------------------DDI 205 (359)
T ss_pred HHHHHHhhh-hhhcccCCCCCCccHHHHHHHHcCC-eeEEEEeCCH-------------------------------HHH
Confidence 000000000 0000000011333455555555533 6777776642 345
Q ss_pred HHHHHHhcccCCCEEEEecccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCcccccccceecCCCCCCC
Q psy6858 241 TRACTIANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDE 320 (592)
Q Consensus 241 ~~~i~la~~~~~pl~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr~~~ 320 (592)
.++++++++.+.++.+.|+... .+.++.+++. |+ .+...+... ....+.. . .
T Consensus 206 ~~~l~~~~e~g~~~~i~H~~~~--~~~~~~la~~----gv--~v~~~P~~~--------~~~~~~~---------~---~ 257 (359)
T cd01309 206 LTAIRIAKEFGIKITIEHGAEG--YKLADELAKH----GI--PVIYGPTLT--------LPKKVEE---------V---N 257 (359)
T ss_pred HHHHHHHHHcCCCEEEECchhH--HHHHHHHHHc----CC--CEEECcccc--------ccccHHH---------h---h
Confidence 5677788888988889998754 4555666666 77 432221110 0000000 0 1
Q ss_pred CCHHHHHHHHhcC-CceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHH
Q psy6858 321 TTPTHLLTLLNEN-ALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAK 399 (592)
Q Consensus 321 ~~~~~l~~~l~~G-~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak 399 (592)
.....+..+++.| +.++++||+...+.. .+...+..++ ..++++.++++++|.|||+
T Consensus 258 ~~~~~~~~l~~aGGv~valgsD~~~~~~~---------------------~l~~~~~~a~-~~gl~~~~al~~~T~n~A~ 315 (359)
T cd01309 258 DAIDTNAYLLKKGGVAFAISSDHPVLNIR---------------------NLNLEAAKAV-KYGLSYEEALKAITINPAK 315 (359)
T ss_pred cchhhHHHHHHcCCceEEEECCCCCccch---------------------hHHHHHHHHH-HcCCCHHHHHHHHHHHHHH
Confidence 1223445788887 999999998532211 0111111112 3468999999999999999
Q ss_pred HcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEEECCEEEE
Q psy6858 400 IFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCV 463 (592)
Q Consensus 400 ~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv~GkvV~ 463 (592)
+||+++++|+|++|++|||||||.+ ||+. ..+|..||++|++||
T Consensus 316 ~lg~~~~~G~l~~G~~ADlvv~d~d-----------------pl~~---~~~v~~v~i~G~~v~ 359 (359)
T cd01309 316 ILGIEDRVGSLEPGKDADLVVWNGD-----------------PLEP---TSKPEQVYIDGRLVY 359 (359)
T ss_pred HhCCCCCcccCCCCCccCEEEECCC-----------------cccc---cCcccEEEECCEEeC
Confidence 9999888999999999999999987 2222 247889999999986
No 100
>COG3964 Predicted amidohydrolase [General function prediction only]
Probab=99.93 E-value=2.2e-24 Score=208.79 Aligned_cols=313 Identities=21% Similarity=0.225 Sum_probs=199.4
Q ss_pred cccEEEEccEEEcCCCce--eeEEEEECCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCcccccCC-CCChhhHH
Q psy6858 18 QNRLLIKNGKVVNADKIS--DLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELELMG-ATSVDDFY 94 (592)
Q Consensus 18 ~~~llIkng~Iv~~d~~~--~~dV~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~-~~~~d~~~ 94 (592)
+.++|++|++++++..-. -.+|.|.||+|++++ +.+.|...++||++|++|.||+||.|+|.+..... ...+|
T Consensus 3 qfdiLLt~~rlidpa~g~d~~tniai~ngkIaa~~-d~~apa~tq~Ida~Gc~VspG~iDlHvHvy~ggt~~~v~pd--- 78 (386)
T COG3964 3 QFDILLTGGRLIDPARGIDEITNIAIINGKIAAAD-DYPAPAETQIIDADGCIVSPGLIDLHVHVYYGGTEGGVRPD--- 78 (386)
T ss_pred ccceeeeCCeecccccccCccceeeeecCeEEecc-CcCCChhheEEccCccEeccCeeeeeeEEecCCCccCcCHH---
Confidence 579999999999875332 478999999999999 78888889999999999999999999999654332 22333
Q ss_pred HHHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhc---cCceeeeeccccccCCCh------HHHHHHHHHHHHcC-
Q psy6858 95 HGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKAD---EKVCCDYALHVGITWWSD------QVQQEMAELCEKHG- 164 (592)
Q Consensus 95 ~~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~------~~~~~~~~lv~~~G- 164 (592)
..+...||||++|... .|..-.+.|.+....+. .++..+.+.- ++.+.++ -..+++.++++++-
T Consensus 79 ---~~ga~~GvTTvVDAGS--aGaanf~gF~r~vie~Sr~RI~Aflnvs~~-Gl~a~nE~~d~~nid~d~i~aa~reh~d 152 (386)
T COG3964 79 ---MYGAPNGVTTVVDAGS--AGAANFDGFYRTVIEASRVRIKAFLNVSPP-GLTASNELYDPDNIDEDKIHAAFREHRD 152 (386)
T ss_pred ---HccccCCceEEEecCC--cCccchhhHHHHhhcchhheeeeeeeccCc-ceeeehhhCChhhCCHHHHHHHHHhCcC
Confidence 3367899999999954 34444444444332222 1344444432 2222221 13345666666532
Q ss_pred -CcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHH
Q psy6858 165 -VNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRA 243 (592)
Q Consensus 165 -v~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~ 243 (592)
+.++|+-++-+......-.-+....+.++.+++++++|..+......++...+..|
T Consensus 153 ~ivGlKvR~s~~~~g~~GitPl~la~~ia~~~klPlmvHigePp~~~dEvlerL~~G----------------------- 209 (386)
T COG3964 153 VIVGLKVRVSTEDIGEYGITPLTLALRIANDLKLPLMVHIGEPPVLMDEVLERLRRG----------------------- 209 (386)
T ss_pred cEEEEEEEeeeccccccCCchHHHHHHHHhhcCCceEEecCCCCccHHHHHHhccCC-----------------------
Confidence 45667666544332233334777788899999999999766433323222222222
Q ss_pred HHHhcccCCCEEEEecc----------cHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCcccccccceec
Q psy6858 244 CTIANQVDCPLYVVHIM----------SKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLS 313 (592)
Q Consensus 244 i~la~~~~~pl~i~hv~----------s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~~~~~~~~~ 313 (592)
++ ++|+. +..-....++++++ |+ .+|..|-... |.
T Consensus 210 -------DI---itHcfngkpn~~l~~dg~vr~~vrra~er----GV-------------~fD~ghG~as------fs-- 254 (386)
T COG3964 210 -------DI---ITHCFNGKPNTILTDDGVVRAEVRRARER----GV-------------IFDAGHGRAS------FS-- 254 (386)
T ss_pred -------ce---eeeeccCCCCCccccchhHHHHHHHHHhc----ce-------------EEEccCCcce------ee--
Confidence 11 22332 23344556777777 87 2222222211 10
Q ss_pred CCCCCCCCCHHHHHHHHhcCC-ceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHH
Q psy6858 314 PPLRPDETTPTHLLTLLNENA-LQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAV 392 (592)
Q Consensus 314 pplr~~~~~~~~l~~~l~~G~-~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~ 392 (592)
-.--..+++.|. +..++||-...+. ++|--..+++++.|++. -+|++.++++.
T Consensus 255 ---------f~vAr~aia~GllP~~ISSDlh~~~~----------------~n~Pv~dla~~mSKlla-lgmpl~~Vi~a 308 (386)
T COG3964 255 ---------FNVARRAIANGLLPDIISSDLHTITK----------------LNGPVYDLAWIMSKLLA-LGMPLTDVINA 308 (386)
T ss_pred ---------HHHHHHHHhcCCCcceeeccceeeee----------------cCchHHHHHHHHHHHHH-cCCcHHHHHHH
Confidence 011225788888 5889999544331 12223444555555544 46899999999
Q ss_pred HhHhHHHHcCCCCCCccccCCCCccEEEEeCCc
Q psy6858 393 TSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKA 425 (592)
Q Consensus 393 ~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~ 425 (592)
+|.|||..+++ +.+|+|+||.+|||+||+...
T Consensus 309 vT~npA~~i~l-~~~gtLa~G~~aD~tvf~lk~ 340 (386)
T COG3964 309 VTHNPAVLIGL-AEIGTLAPGAFADITVFKLKN 340 (386)
T ss_pred HhcCHHHHhCc-cccCccCCCcccceEEEEecc
Confidence 99999999999 689999999999999998663
No 101
>COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=99.91 E-value=3.8e-23 Score=202.52 Aligned_cols=345 Identities=21% Similarity=0.230 Sum_probs=207.5
Q ss_pred EEEccEEEcCCCceeeEEEEECCEEEEeecCCCCCCCCeEEecCCCEEeeCccccCcCc-cc---ccCCCCC--hhhHHH
Q psy6858 22 LIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHF-EL---ELMGATS--VDDFYH 95 (592)
Q Consensus 22 lIkng~Iv~~d~~~~~dV~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~V~PG~ID~HtH~-~~---~~~~~~~--~d~~~~ 95 (592)
+|.|++|+..|....+.|+|+||+|..|.+.... ...-||+.|.+++||+||.||-. .. |--+..+ ...+..
T Consensus 2 ~lsnarivl~D~v~~gsv~i~DG~Ia~i~~g~s~--~~~~~d~eGd~LLPGlIeLHtD~lE~~~~PRPgV~wp~~aAi~a 79 (377)
T COG3454 2 ILSNARIVLEDRVVNGSVLIRDGLIADIDEGISP--LAAGIDGEGDYLLPGLIELHTDNLERFMTPRPGVRWPPIAAILA 79 (377)
T ss_pred ccccceEEeecceeeeeEEEecceEeeeccccCc--ccccccCCCCeecccchhhcchhhhcccCCCCCCCCCchHHHHH
Confidence 6889999999999999999999999999986542 24679999999999999999943 21 1111111 112223
Q ss_pred HHHHHHcCCeeEEeccccCC----CC---ccHHHHHHHHHHH-hccCceeeeeccccccCCChHHHHHHHHHHHHcCCcE
Q psy6858 96 GTKAAVAGGTTTIIDFALPR----KG---ESLIKTYESWRQK-ADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNS 167 (592)
Q Consensus 96 ~~~~ala~GtTti~d~~~~~----~~---~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~Gv~~ 167 (592)
--+..++.||||+.|...-. .+ ..+.+.++..... +....+.+--+|....--.+...+.+++++....+..
T Consensus 80 hD~~l~~sGITTv~dal~iGd~~~gg~r~~~~~~midaI~~~~~~g~lradHr~HlRcEvs~~~~l~~~e~~~~~p~v~L 159 (377)
T COG3454 80 HDAQLAASGITTVLDALAIGDVRDGGLRLENLRKMIDAIEEAQAAGRLRADHRLHLRCEVSHPATLPLFEDLMDHPRVKL 159 (377)
T ss_pred hhHHHHhcChhhHHhhhhcCcccCCccchHHHHHHHHHHHHHHhccchhhccceeeeeecCChhHHHHHHHHhcCCCeeE
Confidence 33456789999999876411 11 1122222222222 3334667777887777677788888888887655544
Q ss_pred EEEEEe-----------------eCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCC
Q psy6858 168 FKTFMA-----------------YKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLS 230 (592)
Q Consensus 168 ~k~~~~-----------------~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s 230 (592)
+. .|. |.+.+.++++++.+.+..-..+..... ..........+.+.||.-. .|--.
T Consensus 160 iS-lMDH~PGQrQf~~le~Y~~yy~~k~~~s~~e~~~~i~~r~a~~~~y~-----~~~r~~i~~~c~~rgI~lA-SHDDa 232 (377)
T COG3454 160 IS-LMDHTPGQRQFANLEKYREYYQGKRGLSDEEFAEFIEERQALSARYS-----DPNRQAIAALCRERGIALA-SHDDA 232 (377)
T ss_pred EE-ecCCCCCcchhhhHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcc-----cchHHHHHHHHHHcCCcee-cCCcC
Confidence 43 332 233345777777766544333222110 0011223344445555432 22333
Q ss_pred CcHHHHHHHHHHHHHHhcccCCCEEEEecccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCcccccccc
Q psy6858 231 RPEEVEAEAVTRACTIANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAH 310 (592)
Q Consensus 231 ~p~~~e~eav~~~i~la~~~~~pl~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~~~~~~ 310 (592)
.++.++ |+....+.+++ .| .+ .+.-+.+|+. |+ .|. +-.-.+...++|.-+
T Consensus 233 T~~hV~-es~~~Gv~iAE---FP------tT---~eAA~asr~~----Gm--~Vl--MGAPNivrGgSHsGN-------- 283 (377)
T COG3454 233 TVEHVA-ESHGLGVAIAE---FP------TT---VEAAKASREL----GM--QVL--MGAPNIVRGGSHSGN-------- 283 (377)
T ss_pred cHHHHH-HHHhcCeeEEe---Cc------cH---HHHHHHHHHh----Cc--hhh--cCCCceeccCCcccc--------
Confidence 344443 33333333332 11 11 2333444555 77 321 001112222333221
Q ss_pred eecCCCCCCCCCHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHH
Q psy6858 311 VLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFV 390 (592)
Q Consensus 311 ~~~pplr~~~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v 390 (592)
-+..++.+.|.+++++||+.|++..+..+. + .-....+++.+++
T Consensus 284 -------------vsA~ela~~glLDiLsSDY~P~SLl~A~F~---------------------L--a~~~~~~~lpqAv 327 (377)
T COG3454 284 -------------VSARELAQHGLLDILSSDYVPASLLHAAFR---------------------L--ADLGSNISLPQAV 327 (377)
T ss_pred -------------hhHHHHHhCCceeeecccCCcHHHHHHHHH---------------------H--hhhhcccCHHHHH
Confidence 123478889999999999999776544321 1 1122345899999
Q ss_pred HHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEEECCEEEE
Q psy6858 391 AVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCV 463 (592)
Q Consensus 391 ~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv~GkvV~ 463 (592)
+++|.|||+++|+. ++|+|++|++||||....+... | .+..||+.||-|+
T Consensus 328 alvt~nPA~algl~-DRG~Ia~GlrADlv~v~~~~~v--------------p--------~ir~vwr~G~rv~ 377 (377)
T COG3454 328 ALVTKNPARALGLT-DRGRIAPGLRADLVRVRRDGGV--------------P--------VIRTVWRAGKRVA 377 (377)
T ss_pred HHhccCHHHhcCCC-cccccccccccceEEEecCCCC--------------c--------eeeeeeecceecC
Confidence 99999999999995 8999999999999988766211 2 4689999999874
No 102
>KOG3968|consensus
Probab=99.90 E-value=1.1e-22 Score=206.39 Aligned_cols=354 Identities=17% Similarity=0.157 Sum_probs=198.6
Q ss_pred eeEEEEEC-CEEEEeecCCCCC----------CCCeEEecCCCEEeeCccccCcCc-c----------c-----------
Q psy6858 36 DLDIYIEN-GVIQQLGRNLIVP----------GGVRVIDAAGSYVIPGGIDPHTHF-E----------L----------- 82 (592)
Q Consensus 36 ~~dV~I~d-G~I~~Ig~~~~~~----------~~~~vIDa~G~~V~PG~ID~HtH~-~----------~----------- 82 (592)
...+.|.| |+|+.|++....+ +..++++.+|+++||||||+|+|. . +
T Consensus 27 ~~sl~Vd~~GKi~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~mPGfVdtH~H~a~q~~~s~~g~d~pll~wl~~~~f 106 (439)
T KOG3968|consen 27 GSSLGVDDTGKIVFIGKAYFDENKLKGEGVEKENTKIKLSSGHFLMPGFVDTHIHPAHQFAMSGAGTDMPLLQWLGKYTF 106 (439)
T ss_pred CcceeecCCccEEEeeccccchhhhcccccccccceeeecCCcEEecceeecccchHhhhhhhccccCcHHHHHhhccee
Confidence 35568877 9999999854322 245789999999999999999993 1 1
Q ss_pred ccCCCCCh-hhHH----HHHHHHHcCCeeEEeccccCCCC--ccHHHHHHHHHHHhcc-Cceeeeecc---ccccCCChH
Q psy6858 83 ELMGATSV-DDFY----HGTKAAVAGGTTTIIDFALPRKG--ESLIKTYESWRQKADE-KVCCDYALH---VGITWWSDQ 151 (592)
Q Consensus 83 ~~~~~~~~-d~~~----~~~~~ala~GtTti~d~~~~~~~--~~~~~a~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~ 151 (592)
+....++. ++.+ .-.+..|++||||+.-+..-... ..+.++......++.. +.+.+-.-| ...+ -.++
T Consensus 107 ~le~~~~~~e~~~q~~~~vv~~mL~~GTTt~~~f~~~~~~s~~ll~~~~~~~G~R~~igkv~m~~~~~~~p~~~~-~~E~ 185 (439)
T KOG3968|consen 107 PLEATFTNEEDARQVYQRVVKEMLRAGTTTVEYFSTLHLDSELLLARAAIRAGQRALIGKVCMDCNAHAVPKGVE-TTEE 185 (439)
T ss_pred ecchhhhhHHHHHHHHHHHHHHHHHcCceehhhhhccCchhHHHHHHHHHHhCCceeeeeehhccCCCCCCccch-hHHH
Confidence 11112222 3333 34557789999999765421111 1122333333333222 222222221 1111 1222
Q ss_pred HHHHHHHHHH-------HcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEec-CchhhhHHHHHHHHHcCCCC
Q psy6858 152 VQQEMAELCE-------KHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHA-ENGEIIDKNTQKLLAAGIKG 223 (592)
Q Consensus 152 ~~~~~~~lv~-------~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHa-e~~~~i~~~~~~~~~~G~~~ 223 (592)
..+..++++. ..+...+... -...|+.+-+.+..+.++.+.+.++.|. |+...+...+...-+.
T Consensus 186 si~~t~~~i~~~~~~~~~~~~~~vt~~----fa~~c~k~v~~~l~~lak~~~l~~q~hIsen~~EI~~~~~ff~~~---- 257 (439)
T KOG3968|consen 186 SIESTEDLIPKLEKLKREKVNPIVTPR----FAASCSKGVFEELSKLAKYHNLHIQIHISENGKEIEAVKNFFPEK---- 257 (439)
T ss_pred HHHHHHHHHHHHHhhccCCCCCccccc----ccCCCcchhHHHHHHHHHhhhhhhhhhhhhcHHHHHHHHHhhhhc----
Confidence 2333333332 1121111111 1234777778888888999999999995 5665554433222110
Q ss_pred CCCccCCCcHHHHHHHHHHHHHHhcccC---CCEEEEecccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCC
Q psy6858 224 PEGHQLSRPEEVEAEAVTRACTIANQVD---CPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQI 300 (592)
Q Consensus 224 p~~~~~s~p~~~e~eav~~~i~la~~~~---~pl~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~ 300 (592)
.+.+ .+.......+ +-.|.+|++..+ .+. +.++ |.. ...+++.+..|
T Consensus 258 -----~~y~---------~~yd~~~lL~~ktvlaH~~hl~d~e-i~~---l~k~----g~s-vshCP~Sn~~L------- 307 (439)
T KOG3968|consen 258 -----LSYT---------DVYDKGGLLTEKTVLAHLEHLSDEE-IEL---LAKR----GCS-VSHCPTSNSIL------- 307 (439)
T ss_pred -----ccch---------HHHHHhcccchHhHhhhheecCchh-HHH---HHhc----CCc-eEECCcchhhh-------
Confidence 0000 1111111111 233566765544 333 3333 540 22233322221
Q ss_pred CCcccccccceecCCCCCCCCCHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhcc
Q psy6858 301 PCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVV 380 (592)
Q Consensus 301 ~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~ 380 (592)
......+.++|+.|+.+.+|||.|+.+...... .++.|+..+.....
T Consensus 308 -------------------~sG~~~vr~lL~~~v~VgLGtDv~~~s~l~a~r--------------~A~~~s~hL~~~~~ 354 (439)
T KOG3968|consen 308 -------------------GSGIPRVRELLDIGVIVGLGTDVSGCSILNALR--------------QAMPMSMHLACVLD 354 (439)
T ss_pred -------------------ccCCccHHHHHhcCceEeecCCccccccHHHHH--------------HHHHHHHHHHhccC
Confidence 122333458999999999999998754332211 13444555543334
Q ss_pred CCCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEee---eeeEEEE
Q psy6858 381 PGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHG---VPEYVIV 457 (592)
Q Consensus 381 ~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g---~~~~Viv 457 (592)
.-+|++.|+|.+||.|+|++||+++..|++++||++|++++|.+.+.. +...+.. .....+-..+.| ++..||+
T Consensus 355 ~~~Ls~~e~L~lATi~GA~aLg~d~~~Gs~eVGK~fDai~id~s~~~~-~l~~~~~--~~~lI~~~v~~g~drni~~V~V 431 (439)
T KOG3968|consen 355 VMKLSMEEALYLATIGGAKALGRDDTHGSLEVGKYFDAIIIDLSAPES-PLYRFSG--HHDLISKVVYNGDDRNIAEVFV 431 (439)
T ss_pred cccCCHHHHHHHHhccchhhccCCCcccceecccccceEEEeCCCCcc-hhhhccc--hHHHHHHHHhcCCCCceEEEEE
Confidence 578999999999999999999999999999999999999999985511 0111000 112333445566 8899999
Q ss_pred CCEEEEE
Q psy6858 458 GGRVCVD 464 (592)
Q Consensus 458 ~GkvV~~ 464 (592)
+||.|+.
T Consensus 432 ~Gk~v~~ 438 (439)
T KOG3968|consen 432 AGKLVKQ 438 (439)
T ss_pred ccEEecc
Confidence 9999875
No 103
>cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.
Probab=99.90 E-value=8.1e-23 Score=224.41 Aligned_cols=190 Identities=19% Similarity=0.128 Sum_probs=114.5
Q ss_pred cCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCEEEE
Q psy6858 178 YMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVV 257 (592)
Q Consensus 178 ~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~i~ 257 (592)
..+++++|.++++.|++.|+++.+|+.....+.... +++..+.......+++..+.
T Consensus 290 ~~~~~e~l~~~~~~a~~~g~~v~~Ha~gd~~i~~~l------------------------~~~~~~~~~~g~~~~r~~i~ 345 (479)
T cd01300 290 LLISPEELEELVRAADEAGLQVAIHAIGDRAVDTVL------------------------DALEAALKDNPRADHRHRIE 345 (479)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEEecHHHHHHHH------------------------HHHHHHHHhcCCCCCCceee
Confidence 356899999999999999999999998654333222 11112211111235778899
Q ss_pred ecccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCcccccccceecCCCCCCCCCHHHHHHHHhcCCceE
Q psy6858 258 HIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQT 337 (592)
Q Consensus 258 hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~~ 337 (592)
|+.... .+.++++++. |+ ..++++.++...+..+...+.........+ .+..+++.|+.++
T Consensus 346 H~~~~~-~~~~~~l~~~----gv----~~~~~P~~~~~~~~~~~~~~lg~~~~~~~~----------p~~~~~~~Gv~v~ 406 (479)
T cd01300 346 HAQLVS-PDDIPRFAKL----GV----IASVQPNHLYSDGDAAEDRRLGEERAKRSY----------PFRSLLDAGVPVA 406 (479)
T ss_pred ecccCC-HHHHHHHHHc----CC----ceEeCcccccCchHHHHHhcccHHHHhcCc----------hHHHHHHCCCeee
Confidence 988654 4556777766 66 335555554433322111000000111222 3447899999999
Q ss_pred EeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCCcc
Q psy6858 338 TGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDAD 417 (592)
Q Consensus 338 ~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~AD 417 (592)
+|||++..... +|..+..++......... ......++++.++++++|.|||+++|+++++|+|++|++||
T Consensus 407 lGSD~~~~~~~-------p~~~~~~av~~~~~~~~~---~~~~~~~ls~~~al~~~T~~~A~~lg~e~~~GsLe~Gk~AD 476 (479)
T cd01300 407 LGSDAPVAPPD-------PLLGIWAAVTRKTPGGGV---LGNPEERLSLEEALRAYTIGAAYAIGEEDEKGSLEPGKLAD 476 (479)
T ss_pred ccCCCCCCCCC-------HHHHHHHHheeeCCCCCC---CCCccccCCHHHHHHHHHHHHHHHhccccccccccCCcccc
Confidence 99999654211 111000000000000000 00134578999999999999999999998999999999999
Q ss_pred EEE
Q psy6858 418 IVV 420 (592)
Q Consensus 418 lVv 420 (592)
|||
T Consensus 477 lvv 479 (479)
T cd01300 477 FVV 479 (479)
T ss_pred eeC
Confidence 986
No 104
>COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.89 E-value=1e-20 Score=190.91 Aligned_cols=99 Identities=25% Similarity=0.278 Sum_probs=76.9
Q ss_pred CCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEee---eeeEEEEC
Q psy6858 382 GILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHG---VPEYVIVG 458 (592)
Q Consensus 382 ~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g---~~~~Viv~ 458 (592)
-.|+++++|+..|...|+.||| .+.|-|++|..|||+|+|+...+.....+-. --|+-|+...- .+..|++.
T Consensus 472 p~l~Le~av~rmT~~~Ae~~GL-~drGlvreG~rADl~viDp~~vr~~a~y~~~----~lPa~G~~~~~vn~~~vat~v~ 546 (579)
T COG3653 472 PLLSLERAVRRMTGELAEWFGL-GDRGLVREGDRADLVVIDPHLVRDVATYTEP----ALPAYGILRVMVNRNVVATGVG 546 (579)
T ss_pred CcccHHHHHHHHhccHHHHhCc-ccccccccccccceEEEccccccccccccCc----cCCCCcceEEEEeccceeeecc
Confidence 4689999999999999999999 6789999999999999999866554432222 23454543221 35678888
Q ss_pred CEEEEECCeeeecCCCceeecCCCCCC
Q psy6858 459 GRVCVDEGNLRVAQGQGNYLPTHTNPP 485 (592)
Q Consensus 459 GkvV~~~g~l~~~~g~g~~~~~~~~~~ 485 (592)
|.+.++||+++...-.|||++..+...
T Consensus 547 Gvvs~rdGe~tg~~~aGR~lR~g~~g~ 573 (579)
T COG3653 547 GVVSFRDGEFTGQVKAGRYLRAGELGA 573 (579)
T ss_pred eeEEEecCcccCcccccchhccccccc
Confidence 999999999988656999999876543
No 105
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=99.89 E-value=4.7e-21 Score=206.59 Aligned_cols=283 Identities=23% Similarity=0.292 Sum_probs=172.2
Q ss_pred ecCCCEEeeCccccCcCcccccCCCCChhhHHHHHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeecc
Q psy6858 63 DAAGSYVIPGGIDPHTHFELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALH 142 (592)
Q Consensus 63 Da~G~~V~PG~ID~HtH~~~~~~~~~~~d~~~~~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 142 (592)
|++|++|+|||||+|+|+..+.. +.+++ +++++++||||+++...........+.++...+.+. +...++.+.
T Consensus 1 Da~G~~v~PG~ID~H~Hi~~~~~---~~~~~---~~~a~~~GvTtvv~~p~~~~~v~g~~~~~~~~~~a~-~~p~~~~~~ 73 (422)
T cd01295 1 DAEGKYIVPGFIDAHLHIESSML---TPSEF---AKAVLPHGTTTVIADPHEIANVAGVDGIEFMLEDAK-KTPLDIFWM 73 (422)
T ss_pred CCCCCEEccCEEEccCCcCCCCC---ChHHH---HHHHHCCCcEEEEeCCCCCCcCCCHHHHHHHHHHHh-CCCceEEEe
Confidence 79999999999999999987642 33333 789999999999987533333233444444444332 223333222
Q ss_pred cc--ccCCCh----H--HHHHHHHHHHHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHH
Q psy6858 143 VG--ITWWSD----Q--VQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQ 214 (592)
Q Consensus 143 ~~--~~~~~~----~--~~~~~~~lv~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~ 214 (592)
+. ++.... . ..++++++.+..++.+++.+|.|... ...++++.+.++.++++|.++.+|+.... .....
T Consensus 74 ~p~~vp~t~~e~~g~~~~~~~i~~l~~~~~vvglgE~md~~~v-~~~~~~l~~~i~~A~~~g~~v~~Ha~g~~--~~~L~ 150 (422)
T cd01295 74 LPSCVPATPFETSGAELTAEDIKELLEHPEVVGLGEVMDFPGV-IEGDDEMLAKIQAAKKAGKPVDGHAPGLS--GEELN 150 (422)
T ss_pred CCCcCCCCCCCCCCCcCCHHHHHHHhcCCCCcEEEEeccCccc-cCCcHHHHHHHHHHHhCCCEEEEeCCCCC--HHHHH
Confidence 21 111111 1 36788888776699999999887653 34778999999999999999999997643 12233
Q ss_pred HHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCEEEEecccHHHHHHHHHHHHHHHhcCCceeeeeecccceee
Q psy6858 215 KLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVG 294 (592)
Q Consensus 215 ~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~ 294 (592)
.++..|+.. + |..... .+.++++ +. |+ .+....
T Consensus 151 a~l~aGi~~-d-H~~~~~--------------------------------eea~e~l-~~----G~--~i~i~~------ 183 (422)
T cd01295 151 AYMAAGIST-D-HEAMTG--------------------------------EEALEKL-RL----GM--YVMLRE------ 183 (422)
T ss_pred HHHHcCCCC-C-cCCCcH--------------------------------HHHHHHH-HC----CC--EEEEEC------
Confidence 333344322 1 111111 1111121 12 55 221000
Q ss_pred cCCCCCCCcccccccceecCCCCCCCCCHHHHHHHHh--cCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHH
Q psy6858 295 THANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLN--ENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLS 372 (592)
Q Consensus 295 ~d~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~--~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~ 372 (592)
+. . ..+.+.+.+.+. .+..++++||....+... ..| .+.
T Consensus 184 --g~-~-------------------~~~~~~~~~~l~~~~~~~i~l~TD~~~~~~~~-----------~~g------~~~ 224 (422)
T cd01295 184 --GS-I-------------------AKNLEALLPAITEKNFRRFMFCTDDVHPDDLL-----------SEG------HLD 224 (422)
T ss_pred --cc-c-------------------HhhHHHHHHhhhhccCCeEEEEcCCCCchhhh-----------hcc------hHH
Confidence 00 0 001122223332 478899999984221110 001 122
Q ss_pred HHHHhhccCCCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEeeee
Q psy6858 373 VIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVP 452 (592)
Q Consensus 373 ~~~~~~v~~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~ 452 (592)
.+..+.. ..++++.++++++|.|+|++||+ +++|+|++|+.|||++||.... -++
T Consensus 225 ~v~r~a~-~~g~s~~eal~~aT~n~A~~~gl-~~~G~i~~G~~AD~vv~~~~~~-----------------------~~v 279 (422)
T cd01295 225 YIVRRAI-EAGIPPEDAIQMATINPAECYGL-HDLGAIAPGRIADIVILDDLEN-----------------------FNI 279 (422)
T ss_pred HHHHHHH-HcCCCHHHHHHHHhHHHHHHcCC-CCCcccCCCCcCCEEEECCCCC-----------------------Cce
Confidence 2222222 34689999999999999999999 7899999999999999984210 046
Q ss_pred eEEEECCEEEEECC
Q psy6858 453 EYVIVGGRVCVDEG 466 (592)
Q Consensus 453 ~~Viv~GkvV~~~g 466 (592)
..||++|++||+.-
T Consensus 280 ~~v~~~G~~v~~r~ 293 (422)
T cd01295 280 TTVLAKGIAVVERH 293 (422)
T ss_pred EEEEECCeEEEEec
Confidence 79999999999763
No 106
>COG0804 UreC Urea amidohydrolase (urease) alpha subunit [Amino acid transport and metabolism]
Probab=99.88 E-value=3.2e-21 Score=192.94 Aligned_cols=350 Identities=21% Similarity=0.250 Sum_probs=226.5
Q ss_pred cccEEEEccEEEcCCCceeeEEEEECCEEEEeecCCCC----------CCCCeEEecCCCEEeeCccccCcCcccccCCC
Q psy6858 18 QNRLLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIV----------PGGVRVIDAAGSYVIPGGIDPHTHFELELMGA 87 (592)
Q Consensus 18 ~~~llIkng~Iv~~d~~~~~dV~I~dG~I~~Ig~~~~~----------~~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~~ 87 (592)
-.+++|.|+.|+|..+++++||.|+||+|..||+.-.+ ..++++|-+.|++|.-|+||+|.|+-.|
T Consensus 66 ~~D~VITNa~IiD~~Gi~KADiGikdGrI~~IGKaGNPd~~dgV~iiiG~sTe~iagEg~I~TAGGiDtHiHfI~P---- 141 (568)
T COG0804 66 ALDLVITNALIIDYWGIVKADIGIKDGRIAGIGKAGNPDIMDGVTIIIGPSTEIIAGEGKIVTAGGIDTHIHFICP---- 141 (568)
T ss_pred cccEEEeeeEEEeccceEEeecccccceEEEeecCCCCCccCCceEEeccccceecCCceEEeeccccceeEEecH----
Confidence 46899999999999999999999999999999974322 1367889999999999999999998544
Q ss_pred CChhhHHHHHHHHHcCCeeEEeccccCC-CCc------cHHHHHHHHHHHhccCceeeeeccccccCCChHHHHHHHHHH
Q psy6858 88 TSVDDFYHGTKAAVAGGTTTIIDFALPR-KGE------SLIKTYESWRQKADEKVCCDYALHVGITWWSDQVQQEMAELC 160 (592)
Q Consensus 88 ~~~d~~~~~~~~ala~GtTti~d~~~~~-~~~------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv 160 (592)
+-...||++|+||++.-..+. .+. .-...+....+.++ ....++++........+. .+.+.+
T Consensus 142 -------qqi~~Al~sGiTtmiGGGtGpa~Gt~aTT~TpG~w~i~rMl~a~d-~~p~N~g~lgKGn~s~~~---~L~Eqi 210 (568)
T COG0804 142 -------QQIEEALASGITTMIGGGTGPADGTNATTCTPGPWHIARMLQAAD-GLPMNIGFLGKGNASNPA---PLAEQI 210 (568)
T ss_pred -------HHHHHHHhcCcEEEecCccCCCCCcccccccCCHHHHHHHHHhhh-cCceeeEEeecCCCCCch---hHHHHH
Confidence 225678999999997543211 110 01112222222232 345666665544433333 344444
Q ss_pred HHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHH
Q psy6858 161 EKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAV 240 (592)
Q Consensus 161 ~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav 240 (592)
. .|..++|+. ..+..++..+..++..|.+.++.+.+|...-. +.|+ + |..
T Consensus 211 ~-aGa~GlKlH----EDWG~TpaaI~~~L~VAD~~DvqVaiHtDTLN----------EsGf-------------v--EdT 260 (568)
T COG0804 211 E-AGAIGLKLH----EDWGATPAAIDTCLSVADEYDVQVAIHTDTLN----------ESGF-------------V--EDT 260 (568)
T ss_pred h-hccceeEee----cccCCCHHHHHHHHhhhhhhceEEEEeecccc----------cccc-------------h--HhH
Confidence 3 489899865 44567999999999999999999999964311 1111 1 111
Q ss_pred HHHHHHhcccCCCEEEEecc---cHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCcccccccceecCCCC
Q psy6858 241 TRACTIANQVDCPLYVVHIM---SKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLR 317 (592)
Q Consensus 241 ~~~i~la~~~~~pl~i~hv~---s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr 317 (592)
++...+.-+|..|.. ...+.+.|+.+... .+.|.-+.++.++-..+-.+|+.-- ...+-.+|.+.
T Consensus 261 -----i~A~~gRtIHtyHtEGAGGGHAPDiikv~~~~----NvLPsSTNPT~PytvNT~~EhlDMl---MVcHhL~p~ip 328 (568)
T COG0804 261 -----IAAIKGRTIHTYHTEGAGGGHAPDIIKVAGQP----NVLPSSTNPTRPYTVNTIDEHLDML---MVCHHLDPRIP 328 (568)
T ss_pred -----HHHhcCceeEEeeccCCCCCCccHHHHHccCC----CcCcCCCCCCCCcccccHHHhhhhh---hhhccCCCCCc
Confidence 223346677777766 34677888777655 5555555566665555544444321 01112233222
Q ss_pred CC---------CCCHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhh----ccC---
Q psy6858 318 PD---------ETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKG----VVP--- 381 (592)
Q Consensus 318 ~~---------~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~----v~~--- 381 (592)
.| +++..+---+-+-|....++||..... .+.+.....|+-+ ...
T Consensus 329 eDvaFAeSRIR~eTIAAEdiLhDmGafSmisSDSQAMG-------------------RvGEvi~RtwQtA~kmK~qrG~L 389 (568)
T COG0804 329 EDVAFAESRIRPETIAAEDILHDMGAFSMISSDSQAMG-------------------RVGEVITRTWQTADKMKKQRGAL 389 (568)
T ss_pred chhhhhhhccchhhhhHHHHHhhccceEEeccchHhhh-------------------ccchhhhhHHHHHHHHHHhcCCC
Confidence 11 334433333445688999999975422 1122223334311 011
Q ss_pred -------CCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeE
Q psy6858 382 -------GILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEY 454 (592)
Q Consensus 382 -------~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~ 454 (592)
......+.++..|.|||-.-|+.+.+|++++||.||||+|+|. |-|. +|..
T Consensus 390 ~~d~~~nDN~RvkRYiaKyTINPAIthGis~~vGSvEvGK~ADlVLW~Pa------------------FFGv----KP~~ 447 (568)
T COG0804 390 PEDAGGNDNFRVKRYIAKYTINPAITHGISHEVGSVEVGKLADLVLWDPA------------------FFGV----KPEL 447 (568)
T ss_pred CCCCCCCccHHHhhhhhheecCHHHhcccchhccceeccceeeeeeechh------------------hcCC----Ccce
Confidence 2233568899999999999999999999999999999999986 2222 7899
Q ss_pred EEECCEEEEEC
Q psy6858 455 VIVGGRVCVDE 465 (592)
Q Consensus 455 Viv~GkvV~~~ 465 (592)
|+.+|-+.+..
T Consensus 448 vlkgG~ia~a~ 458 (568)
T COG0804 448 VLKGGMIAWAQ 458 (568)
T ss_pred EEecceeeeec
Confidence 99999999864
No 107
>PF13147 Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2PUZ_B 2GOK_B 3HM7_E 3D6N_A 1XRT_A 1XRF_A 1YNY_B 1K1D_F ....
Probab=99.84 E-value=4.5e-20 Score=188.13 Aligned_cols=300 Identities=26% Similarity=0.260 Sum_probs=167.3
Q ss_pred ecCCCEEeeCccccCcC--cccccCCCCChhhHHHHHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeee
Q psy6858 63 DAAGSYVIPGGIDPHTH--FELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYA 140 (592)
Q Consensus 63 Da~G~~V~PG~ID~HtH--~~~~~~~~~~~d~~~~~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 140 (592)
|++|++|+|||||+|+| +..........+......+.++.+|+||+++.... . .......... ...+.
T Consensus 1 D~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~G~tt~~~~~~~--~--~~~~~~~~~~------~~~~~ 70 (304)
T PF13147_consen 1 DASGKYVLPGLIDLHVHGPLGRSEDGAPWAEQAAAASAAALAGGVTTVVDMPGT--N--PEELNRARRR------GAGYP 70 (304)
T ss_dssp E-TTSEEEE-EEEEEEECCSSCETTTEEHSSHHHHHHHHHHHTTEEEEEESSSS--S--HHHHHHHHHH------ESEEE
T ss_pred CCCCCEEccceeeeeeCCCcCCCCCCccchhhHHHHHHHHHhCCEeEEecCCCC--C--chhhHHHHhh------ccccc
Confidence 89999999999999999 44443333444455577888899999999984222 1 1111111111 11111
Q ss_pred ccccccCCChHHHHHHHHHHHHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcC
Q psy6858 141 LHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAG 220 (592)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~lv~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G 220 (592)
................+.........+..+.+. ......+.+..+.+...+....++..+..........-.+..
T Consensus 71 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (304)
T PF13147_consen 71 --GSGAGPRGTTIEELEALVDLIAAEGVGFVAAYN---GIEGPGLQAAIRAAHRAGVIKVVGHSPADGIEGAIAEGLDAM 145 (304)
T ss_dssp --EECESCCHHHHHHHHHHHHHHHHTEEEEESSST---HHHHHHHHHHHHHHHHHTHEEEEEECHHHHHHHHHHHHHHTT
T ss_pred --cccccccccchHHHHHHHHHHhhcCcceeeccc---cCCHHHHHHHHHHHHhcCCeeeecccchhhHHHHHHhcccch
Confidence 112223334444555554432333333332211 345667888888899999555555444332222221111111
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCEEEEecccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCC
Q psy6858 221 IKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQI 300 (592)
Q Consensus 221 ~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~ 300 (592)
... ......+.......+....+..+++...........+...+.. ++ ..+.... +..+.
T Consensus 146 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~---~~~~~--- 205 (304)
T PF13147_consen 146 EHI--------LPHEVAEALHLAEALAQGAGPGLHCHVASDDATAEGVAIAHGF----GL--PPTPLHL---LARDA--- 205 (304)
T ss_dssp HHS--------THHHHHHHHHHHHHHHHHHTHCEEEEETSSHHHHHHHHHHHHT----TH--EEEEEEH---HHHHH---
T ss_pred hhh--------hhhhHHHHHHHHHHhhhccccchhhhhhhhhhhhHHHHHHHhh----cc--ccchHHh---hHHHH---
Confidence 111 1122223444444455555777777666665544433333333 44 3222210 00000
Q ss_pred CCcccccccceecCCCC--CCCCCHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhh
Q psy6858 301 PCTWHDQAAHVLSPPLR--PDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKG 378 (592)
Q Consensus 301 ~~~~~~~~~~~~~pplr--~~~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~ 378 (592)
......+...||++ . ......+..+++.|+.++++||+.+.... +....+..... .
T Consensus 206 ---~~~~~~~~~~p~~~~~~-~~~~~~~~~l~~~Gv~~~l~sD~~~~~~~-----------------~~~~~~~~~~~-~ 263 (304)
T PF13147_consen 206 ---AAAGIRFKVLPPLRLDL-REDRAALRELLEAGVPVALGSDHAPSSTE-----------------GSGDLLHEAMR-L 263 (304)
T ss_dssp ---HHHGGGGEESSCHHHHT-HHHHHHHHHHHHTTSSEEEEE-BBTTTTT-----------------CTTTHHHHHHH-H
T ss_pred ---HhcCceeeeCCCccccc-hhhhHHHHHHHhCCCeEEEEcCCcccccc-----------------cccccchhhhh-H
Confidence 00033566778765 3 45678889999999999999999875432 00111222222 2
Q ss_pred ccCCCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCCccEE
Q psy6858 379 VVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIV 419 (592)
Q Consensus 379 v~~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlV 419 (592)
+...+|+++++++++|+|||++||+++++|+|++|++||||
T Consensus 264 ~~~~gl~~~~al~~~T~~pA~~lgl~~~~G~i~~G~~ADlv 304 (304)
T PF13147_consen 264 AVRAGLSPEEALRAATSNPARILGLDDDKGSIAPGKDADLV 304 (304)
T ss_dssp HHHTSSTHHHHHHHHTHHHHHHTTBTTTSSSTSTTSB-EEE
T ss_pred HhhcCCCHHHHHHHHHHHHHHHhCCCCCCccCCCCCCCCcC
Confidence 23378999999999999999999999999999999999997
No 108
>COG1229 FwdA Formylmethanofuran dehydrogenase subunit A [Energy production and conversion]
Probab=99.82 E-value=1.9e-19 Score=180.58 Aligned_cols=88 Identities=23% Similarity=0.425 Sum_probs=66.1
Q ss_pred CCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCe-EEeeeeeEEEECCE
Q psy6858 382 GILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGL-VCHGVPEYVIVGGR 460 (592)
Q Consensus 382 ~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~-~~~g~~~~Viv~Gk 460 (592)
..+++.|+..++..|+||.||+.++||.|.+|+||||.|+|.++...-+.. -|+-. .......+|+.+|+
T Consensus 436 rE~t~~eia~~TRa~~ak~lgl~e~kGhLg~GadadIaiYdlnP~~vDps~---------dye~v~kaf~~A~ytlK~Ge 506 (575)
T COG1229 436 RELTLYELAIMTRANPAKVLGLSERKGHLGVGADADIAIYDLNPEQVDPSN---------DYEKVEKAFRKAAYTLKGGE 506 (575)
T ss_pred ccccHHHHHHHHhcChhhhcccccccCccCcCccCceEEEecChhhcCCcc---------cHHHHHHHHhheeEEecCce
Confidence 346889999999999999999988899999999999999998843322211 11111 11124579999999
Q ss_pred EEEECCeeeecCCCceeec
Q psy6858 461 VCVDEGNLRVAQGQGNYLP 479 (592)
Q Consensus 461 vV~~~g~l~~~~g~g~~~~ 479 (592)
+|+.||++.... .||.+-
T Consensus 507 IvvkdGeiv~~p-~grTyw 524 (575)
T COG1229 507 IVVKDGEIVAEP-EGRTYW 524 (575)
T ss_pred EEEecceEEecc-cCceEE
Confidence 999999997765 566443
No 109
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=99.78 E-value=1.8e-17 Score=170.60 Aligned_cols=260 Identities=21% Similarity=0.186 Sum_probs=154.5
Q ss_pred eeCccccCcCc-ccccC---CC-C-ChhhHHHHHHHHHcCCeeEEeccccCC---CC---c----cHHHHHHHHHHHhcc
Q psy6858 70 IPGGIDPHTHF-ELELM---GA-T-SVDDFYHGTKAAVAGGTTTIIDFALPR---KG---E----SLIKTYESWRQKADE 133 (592)
Q Consensus 70 ~PG~ID~HtH~-~~~~~---~~-~-~~d~~~~~~~~ala~GtTti~d~~~~~---~~---~----~~~~a~~~~~~~~~~ 133 (592)
+||+||.|+-. ..-.. +. + ..-.+...-+..+++||||+++...-. .+ . .+.+++...+ ..+
T Consensus 1 lPG~vdlH~D~~E~~~~PRp~v~~~~~~a~~~~d~~~~a~GiTT~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 78 (325)
T cd01306 1 LPGLIDLHTDNLEKHVMPRPGVDWPMDIALAAHDRQLAAAGITTVFDALSFGDEEGGRRRLRNLRKLIDAIRELH--ARG 78 (325)
T ss_pred CCCeEEecCcchhcccCCCCCCCCCHHHHHHHHHHHHHhcCcccceeeeEeccccCCcccHHHHHHHHHHHHHhh--hCC
Confidence 69999999933 22111 11 1 112233444566889999999865322 11 1 1222333322 124
Q ss_pred CceeeeeccccccCCChHHHHHHHHHHHHcCCcEEEEEEe----------------e-CCCcC-----------------
Q psy6858 134 KVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMA----------------Y-KGLYM----------------- 179 (592)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~Gv~~~k~~~~----------------~-~~~~~----------------- 179 (592)
...++.-+|.-..-..++..+.++.+++...+..+. +|. | .....
T Consensus 79 ~~~~d~~~hlR~E~~~~~~~~~~~~~~~~~~v~lvs-~~dH~pg~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (325)
T cd01306 79 VLRADHRLHLRCELADPAVLPELESLMADPRVHLVS-LMDHTPGQRQFRDLEKYREYYAKKYGLSDEEVEEAILERKARA 157 (325)
T ss_pred cchhhcceEEEEeecCccHHHHHHHHhcCCCcCEEE-EeCCCCccccccCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHh
Confidence 467788888877777788888888888775555443 332 0 01111
Q ss_pred --CCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCEEEE
Q psy6858 180 --LSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVV 257 (592)
Q Consensus 180 --~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~i~ 257 (592)
.+++++.++++.|+++|+++.+|..... +....+.+.|+...|
T Consensus 158 ~~~~~~~~~~iv~~A~~~gl~vasH~d~~~---~~v~~a~~~Gv~~~E-------------------------------- 202 (325)
T cd01306 158 AAYAPANRSELAALARARGIPLASHDDDTP---EHVAEAHELGVVISE-------------------------------- 202 (325)
T ss_pred hhcCHHHHHHHHHHHHHCCCcEEEecCCCh---HHHHHHHHCCCeecc--------------------------------
Confidence 2345667777888888888888875421 234444444544432
Q ss_pred ecccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCcccccccceecCCCCCCCCCHHHHHHHHhcCCceE
Q psy6858 258 HIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQT 337 (592)
Q Consensus 258 hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~~ 337 (592)
|..+.+ .+..+++. |+ .|..-. ..+...++ ......++++++.|+.++
T Consensus 203 ~p~t~e---~a~~a~~~----G~--~vv~ga--pn~lrg~s---------------------~~g~~~~~~ll~~Gv~~a 250 (325)
T cd01306 203 FPTTLE---AAKAAREL----GL--QTLMGA--PNVVRGGS---------------------HSGNVSARELAAHGLLDI 250 (325)
T ss_pred CCCCHH---HHHHHHHC----CC--EEEecC--cccccCcc---------------------ccccHhHHHHHHCCCeEE
Confidence 222222 23344444 77 332110 00000000 011234568999999999
Q ss_pred EeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCCcc
Q psy6858 338 TGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDAD 417 (592)
Q Consensus 338 ~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~AD 417 (592)
++||+.+.+... ..+ .++...++++.++++++|.|||++||++ ++|+|++|+.||
T Consensus 251 l~SD~~p~sll~-----------------------~~~-~la~~~gl~l~eAl~~aT~nPA~~lGl~-d~G~I~~G~~AD 305 (325)
T cd01306 251 LSSDYVPASLLH-----------------------AAF-RLADLGGWSLPEAVALVSANPARAVGLT-DRGSIAPGKRAD 305 (325)
T ss_pred EEcCCCcHhHHH-----------------------HHH-HHHHHcCCCHHHHHHHHhHHHHHHcCCC-CCCCcCCCCCCC
Confidence 999997643211 112 1234467999999999999999999996 679999999999
Q ss_pred EEEEeCC
Q psy6858 418 IVVWNYK 424 (592)
Q Consensus 418 lVv~d~~ 424 (592)
||+||.+
T Consensus 306 lvvvd~~ 312 (325)
T cd01306 306 LILVDDM 312 (325)
T ss_pred EEEEeCC
Confidence 9999986
No 110
>PF01979 Amidohydro_1: Amidohydrolase family; InterPro: IPR006680 This group of enzymes represents a large metal dependent hydrolase superfamily []. The family includes adenine deaminase (3.5.4.2 from EC) that hydrolyses adenine to form hypoxanthine and ammonia. The adenine deaminase reaction is important for adenine utilization as a purine and also as a nitrogen source []. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases (3.5.1.25 from EC). These enzymes catalyse the reaction: N-acetyl-D-glucosamine 6-phosphate + H2O = D-glucosamine 6-phosphate + acetateThis family includes dihydroorotase and urease which belong to MEROPS peptidase family M38 (beta-aspartyl dipeptidase, clan MJ), where they are classified as non-peptidase homologs. ; GO: 0016787 hydrolase activity; PDB: 1O12_A 2KAU_C 1FWD_C 1A5M_C 1FWC_C 1FWI_C 1EJV_C 1FWH_C 1A5L_C 1KRA_C ....
Probab=99.78 E-value=8.1e-19 Score=183.11 Aligned_cols=294 Identities=21% Similarity=0.251 Sum_probs=144.5
Q ss_pred EEeeCccccCcCcccccCC-----CCChhhHHHHHHHHHcCCeeEEeccccCCCCcc--HHHH-HHHHHHHhc---cCce
Q psy6858 68 YVIPGGIDPHTHFELELMG-----ATSVDDFYHGTKAAVAGGTTTIIDFALPRKGES--LIKT-YESWRQKAD---EKVC 136 (592)
Q Consensus 68 ~V~PG~ID~HtH~~~~~~~-----~~~~d~~~~~~~~ala~GtTti~d~~~~~~~~~--~~~a-~~~~~~~~~---~~~~ 136 (592)
+|||||||+|+|+..+... ....+.+..+++.++++||||++|+....+... .... .+....... ...+
T Consensus 1 ~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (333)
T PF01979_consen 1 YVMPGLIDAHVHGGQGGLRGLLDPEDHYESIRTGAKAALKGGVTTVLDTPHTSPNPDIELRNEIMEGLAAAPKIEPAMTL 80 (333)
T ss_dssp EEEE-EEEEEEEGGGTTHTTSSSHHHHHHHHHHHHHHHHHTTEEEEEEEEESSHCHHHHHHHHHHHHHHHHHHHEEEEEE
T ss_pred CEEcChhHHhhCcCCcCccccCCHHHHHHHHHHHHHHHHhcCeEEEEcCcccCCccccccccccccccccchhhhccccc
Confidence 6999999999999776543 123455677888999999999999965544433 1111 111111111 0011
Q ss_pred ---eeeeccccccCCChHH---------HHHHHHHHHHcCCc-----EEEEEEeeCCCcCCCHHHHHHHHHHHHH-----
Q psy6858 137 ---CDYALHVGITWWSDQV---------QQEMAELCEKHGVN-----SFKTFMAYKGLYMLSDGELYDAFSAIKN----- 194 (592)
Q Consensus 137 ---~~~~~~~~~~~~~~~~---------~~~~~~lv~~~Gv~-----~~k~~~~~~~~~~~~~~~l~~~~~~a~~----- 194 (592)
...+.+.......... .+++.+.+.+.+.. .+......+....++.+.+...++.+++
T Consensus 81 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 160 (333)
T PF01979_consen 81 LGTGSVGGHGEGPNEPPDKNGPHDEAFEGEDFIKFIEEAGSEIKRIDGVIPAISPHNPYTVSDEELREAVELAKEFLAAE 160 (333)
T ss_dssp EEECECSEEEECHHHHHHHHSEHHHHHHHHHHHHHHHHHTTTCEEEECEEEEEEHHTTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccCCchhhhHHHHHHHhhhhhhhhcccccccccccccccccchhhhhhhHHhhhhhHHHHH
Confidence 1222222211111111 11223333332221 3344445567778899999999999998
Q ss_pred c-CCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHH-hcccCCCEEEEecccHHHHHHHHHHH
Q psy6858 195 L-GAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTI-ANQVDCPLYVVHIMSKAAGDAMAYKR 272 (592)
Q Consensus 195 ~-g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~l-a~~~~~pl~i~hv~s~~a~~~i~~ar 272 (592)
. +.++.+|+.+..........+. ....+ +......-+ ....+....+.|...-. .+.++.++
T Consensus 161 ~~~~~~~~h~~~~~~~~~~~~~~~-------------~~~~~--~~~~~~~~~~~~~~~~~~~~~h~~~~~-~~~~~~l~ 224 (333)
T PF01979_consen 161 KLGIPVHIHVAEGTGEVEAMTHLY-------------GMSPI--EALDHLGLLEEAIDDGVDLIAHGTHLS-DEEIELLK 224 (333)
T ss_dssp HHTHEEEEEESSSHHHHCCCHHHH-------------SHHHH--HHHHHHHSCHHHHHHHCEEEEEHTTSE-HHHHHHHH
T ss_pred hhcccceeeeccCcccceeEeeee-------------eccch--hhhccchhhhhhcccccceeeccccCC-HHHhhhhh
Confidence 3 9999999876543310001000 00001 111000000 00001122233444211 11233333
Q ss_pred HHHHhcCCceeee-eecccceee-cCCCCCCCcccccccceecC-CCCCCCCCHHHHHHHHhc-CCceEEeCCCCCCChh
Q psy6858 273 KELMKKGKHCTLY-GETLAAAVG-THANQIPCTWHDQAAHVLSP-PLRPDETTPTHLLTLLNE-NALQTTGSDNCTFNKN 348 (592)
Q Consensus 273 ~~~~~~G~~~~v~-~e~~~~~l~-~d~~~~~~~~~~~~~~~~~p-plr~~~~~~~~l~~~l~~-G~~~~~gsD~~~~~~~ 348 (592)
+. +. .+. +........ ..+...... ..+ ....-......+..++.. |+. +|||+..
T Consensus 225 ~~----~~--~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~~~g~~--lgtDg~~---- 284 (333)
T PF01979_consen 225 ET----GI--GIIHCPISNDSAPHKPGKAIMMD--------GTAEGIYGLGSGGAPLFRMLDKMGVN--LGTDGVA---- 284 (333)
T ss_dssp HH----TH--EEEEEHHHHHHHHHHTTHHSETT--------BSBTSBSCTTHHHHHHHHHHHCTTHE--ETTCTTC----
T ss_pred cc----CC--ccccccchhhhhccccccccccc--------hhccccccccccccchhhhhhhcccc--ccccccc----
Confidence 33 43 222 221111100 000000000 000 000001223345566666 777 9999433
Q ss_pred hhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHHHcCCCCCCccccCCCCccEEEEe
Q psy6858 349 QKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWN 422 (592)
Q Consensus 349 ~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~lgl~~~~G~I~~G~~ADlVv~d 422 (592)
. +.+ ..++.. +++.++++++|.||||+||+++++|+|++|++|||||||
T Consensus 285 -~-----------------~l~--~~~~~~-----~~~~~~l~~aT~n~Ak~lg~~~~~G~i~~G~~ADlvv~D 333 (333)
T PF01979_consen 285 -E-----------------ELK--LFVRLG-----ISPEEALKMATINPAKILGLDDDKGSIEPGKDADLVVLD 333 (333)
T ss_dssp -H-----------------HHH--HHHHHH-----SHHHHHHHHHTHHHHHHTTSTTTSSSSSTTSB--EEEEE
T ss_pred -c-----------------ccc--cccccc-----ccccccccccchhHHHHcCCCCCEEEeCcCCCcCEEEeC
Confidence 1 222 222222 899999999999999999999999999999999999997
No 111
>KOG3892|consensus
Probab=99.71 E-value=1.2e-16 Score=152.81 Aligned_cols=374 Identities=17% Similarity=0.176 Sum_probs=212.9
Q ss_pred EEEEccEEEcCCCceeeEEEEECCEEEEeecCC--CCCCCCeEEecCCCEEeeCccccCcCccc--ccCC--CCChhhHH
Q psy6858 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGRNL--IVPGGVRVIDAAGSYVIPGGIDPHTHFEL--ELMG--ATSVDDFY 94 (592)
Q Consensus 21 llIkng~Iv~~d~~~~~dV~I~dG~I~~Ig~~~--~~~~~~~vIDa~G~~V~PG~ID~HtH~~~--~~~~--~~~~d~~~ 94 (592)
+-+.|++|+-+....+-|++|+||||..=.+-. +..-+...||+.|+++.|||||....-+. +|.. ....+.+.
T Consensus 14 lQFtNCrilR~g~l~~edlWVR~GRIldpe~vFFeErt~Ad~riDCgG~IlaPGfIDlQiNGGfGvDFS~dte~~~eGvA 93 (407)
T KOG3892|consen 14 LQFTNCRILRGGKLLREDLWVRGGRILDPEKVFFEERTVADERIDCGGRILAPGFIDLQINGGFGVDFSQDTEDVGEGVA 93 (407)
T ss_pred eeeeeeEEeeCCceeehheeEeCCeecCcccccceeccchhheeccCCeeecCceEEEEecCccccccccchhhhhhhHH
Confidence 458999999888888999999999997655421 11125578999999999999999887643 2221 11112233
Q ss_pred HHHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHh-ccCceeeeeccccccCCChHHHHHHHHHHHHcCCcEEEEEEe
Q psy6858 95 HGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKA-DEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMA 173 (592)
Q Consensus 95 ~~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~Gv~~~k~~~~ 173 (592)
.-++..++.|+|++.......+.+.....+-+..... .++..-..++|...++.+.+.+-.-.+.. +.+|
T Consensus 94 lVAr~ll~hGvtsf~Pt~~tsp~~~YHkilP~ip~~~~~p~GaG~LG~HlEGPFIs~~KrG~HPE~~----i~s~----- 164 (407)
T KOG3892|consen 94 LVARQLLSHGVTSFCPTLVTSPPEVYHKILPQIPVKSGGPHGAGVLGLHLEGPFISREKRGAHPEAH----IRSF----- 164 (407)
T ss_pred HHHHHHHhcCCCcCCCccccCCchhhhhhccccccccCCCCccceeeeeccCCccChhhcCCCHHHH----Hhcc-----
Confidence 4567788999999976655555544444444433322 23456678999998888765432111111 1111
Q ss_pred eCCCcCCCHHHHHHHHHHHHHc-CCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCC
Q psy6858 174 YKGLYMLSDGELYDAFSAIKNL-GAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDC 252 (592)
Q Consensus 174 ~~~~~~~~~~~l~~~~~~a~~~-g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~ 252 (592)
+.+.+..+...--.+ ++.+..-+.+-.-..+.+..+.+.|++...||..+.-..-|......+-.+.+.+|.
T Consensus 165 -------~~~~~~~l~~tYGsleni~IvTlAPEl~~~~evi~~lv~~gitVslGHS~A~L~~gE~AV~sGat~ITHLFNA 237 (407)
T KOG3892|consen 165 -------EADAFQDLLATYGSLENIRIVTLAPELGGAQEVIRALVARGITVSLGHSVADLRAGEDAVWSGATFITHLFNA 237 (407)
T ss_pred -------CccHHHHHHHHhCCccceEEEEecccccCcHHHHHHHHhcceEEeeccchhccCcHHHHHhccchHHHHHHHh
Confidence 122222222222222 233333333333346677888889999888887766555553333333445555666
Q ss_pred CEEEEecccHHHHHHHHHHHHHHHhcCCceeee------eecccceeecCCCCCCCc-ccccccceecCCCCCCCCCHHH
Q psy6858 253 PLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLY------GETLAAAVGTHANQIPCT-WHDQAAHVLSPPLRPDETTPTH 325 (592)
Q Consensus 253 pl~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~------~e~~~~~l~~d~~~~~~~-~~~~~~~~~~pplr~~~~~~~~ 325 (592)
.+.+.|-.. |+...++ +.+....+..||.|-.+. .. .+|...|. -
T Consensus 238 MlpfHHRDP-----------------GlvGLLtSd~lp~gr~iyyGiIsDG~HThpaALR--IAyrthpq---------G 289 (407)
T KOG3892|consen 238 MLPFHHRDP-----------------GLVGLLTSDRLPAGRCIYYGIISDGTHTHPAALR--IAYRTHPQ---------G 289 (407)
T ss_pred ccccccCCC-----------------ceeEEeecCCCCCCCeEEEEEecCCccCChhHhh--hhhhcCCC---------c
Confidence 555545321 3311111 122233445556554432 11 11111110 0
Q ss_pred HHHHHhcCCceEEeCCCCCCChhhhhc---CCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHHHcC
Q psy6858 326 LLTLLNENALQTTGSDNCTFNKNQKEL---GKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFN 402 (592)
Q Consensus 326 l~~~l~~G~~~~~gsD~~~~~~~~~~~---g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~lg 402 (592)
| .|-.+.+.++|-........|..+ |..-|..--+-..|.-.-|......+....+-+.+-++..+|..||++||
T Consensus 290 L--vLVTDAI~ALGl~~GvH~lGqq~v~Vkgl~A~~aGT~Tl~GSiApMd~CvRhf~kATgCs~e~AleaAtlhPAqlLg 367 (407)
T KOG3892|consen 290 L--VLVTDAIPALGLGNGVHTLGQQEVEVKGLTAYVAGTKTLSGSIAPMDVCVRHFLKATGCSMESALEAATLHPAQLLG 367 (407)
T ss_pred e--EEEecchhhcccccccccccceeEEEcceEEEeeccccccccccCcHHHHHHHHHhcCCcHHHHHhhhccChHHhhc
Confidence 0 011111112221111111111110 00011110111233334567777777788889999999999999999999
Q ss_pred CCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEEECCEEEEEC
Q psy6858 403 LYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDE 465 (592)
Q Consensus 403 l~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv~GkvV~~~ 465 (592)
+++.||.|..|++||||++|.+- .|..+|+.|+.||+-
T Consensus 368 ~ek~KGTLDfG~dADFVllDd~l-------------------------~V~aT~isG~~V~~a 405 (407)
T KOG3892|consen 368 LEKSKGTLDFGADADFVLLDDSL-------------------------HVQATYISGELVWQA 405 (407)
T ss_pred cccccccccccccCceEEEccce-------------------------EEEEEEEccEEEEec
Confidence 99999999999999999999761 467999999999974
No 112
>PF13594 Amidohydro_5: Amidohydrolase; PDB: 4F0R_A 4F0S_A 1NFG_C 2FVM_A 2FVK_A 2FTY_D 1YBQ_B 1POJ_B 1ONW_A 2AQO_B ....
Probab=99.53 E-value=1.7e-14 Score=114.34 Aligned_cols=67 Identities=42% Similarity=0.567 Sum_probs=49.3
Q ss_pred EEEECCEEEEeecCCCCC-CCCeEEecCCCEEeeCccccCcCcccccCCCCChhhHHHHHHHHHcCCeeEE
Q psy6858 39 IYIENGVIQQLGRNLIVP-GGVRVIDAAGSYVIPGGIDPHTHFELELMGATSVDDFYHGTKAAVAGGTTTI 108 (592)
Q Consensus 39 V~I~dG~I~~Ig~~~~~~-~~~~vIDa~G~~V~PG~ID~HtH~~~~~~~~~~~d~~~~~~~~ala~GtTti 108 (592)
|+|+||||++|++....+ .+.++||++|++|+|||||+|+|+..+... ..+.......++++|||||
T Consensus 1 V~I~~g~I~~v~~~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~~---~~~~~~~~~~~l~~GvTTV 68 (68)
T PF13594_consen 1 VLIEDGKIVAVGPDSELPADAAEVIDAKGKYVMPGFIDMHTHLGEPGWQ---SLDPETEAAAALAGGVTTV 68 (68)
T ss_dssp EEEETTEEEEEESSCCTTSTCCEEEEETTCEEEE-EEEEEE-TTTTCEG---GCTCHHHHHHHHHTTEEEE
T ss_pred CEEECCEEEEeCCCCCCCCCCCEEEECCCCEEeCCeEeeeecccccccc---ccchhhHHHHHHCcceeeC
Confidence 789999999997654443 466899999999999999999998733221 1222445677789999997
No 113
>cd01305 archeal_chlorohydrolases Predicted chlorohydrolases. These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases.
Probab=99.40 E-value=3.6e-12 Score=129.02 Aligned_cols=234 Identities=18% Similarity=0.216 Sum_probs=121.2
Q ss_pred EEeeCccccCcCcccccC------------------------CCCChhhHHHHH----HHHHcCCeeEEeccccCCCCcc
Q psy6858 68 YVIPGGIDPHTHFELELM------------------------GATSVDDFYHGT----KAAVAGGTTTIIDFALPRKGES 119 (592)
Q Consensus 68 ~V~PG~ID~HtH~~~~~~------------------------~~~~~d~~~~~~----~~ala~GtTti~d~~~~~~~~~ 119 (592)
+|||||||+|+|+.+..+ ...+.++++.++ ..++++||||+.|+... +..
T Consensus 1 ~v~PG~vn~H~H~~~~~~rg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~GtTt~~d~~~~--~~~ 78 (263)
T cd01305 1 ILIPALVNAHTHLGDSAIKEVGDGLPLDDLVAPPDGLKHRLLAQADDRELAEAMRKVLRDMRETGIGAFADFREG--GVE 78 (263)
T ss_pred CccccceeccccHHHHHhhcCCCCCcHHHHhcCcccchHHHHHhCCHHHHHHHHHHHHHHHHhcCCeEEEEccCc--chh
Confidence 589999999999943211 224555565544 35578999999998422 212
Q ss_pred HHHHHHHHHHHhccCceeeeeccccccCCChHHHHHHHHHHHHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeE
Q psy6858 120 LIKTYESWRQKADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIA 199 (592)
Q Consensus 120 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~ 199 (592)
..+++.+.......+. +.+ ++.+.+. .. ++++.+ +.. .++.++...++ +.++++.|+++|+++
T Consensus 79 ~~~a~~~a~~~~g~r~---~~~-~~~~~~~-~~---~~~~~~--~~~----~~~~~~~~~~~---l~~~~~~A~~~g~~v 141 (263)
T cd01305 79 GIELLRRALGKLPVPF---EVI-LGRPTEP-DD---PEILLE--VAD----GLGLSSANDVD---LEDILELLRRRGKLF 141 (263)
T ss_pred HHHHHHHHHHhcCCCc---eEE-eccCCcc-hH---HHHHHh--hcc----cccCCCCCccC---HHHHHHHHHHCCCee
Confidence 2333333333222222 111 1112111 11 222221 221 12334444444 999999999999999
Q ss_pred EEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCEEEEecccHHHHHHHHHHHHHHHhcC
Q psy6858 200 MVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKG 279 (592)
Q Consensus 200 ~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~i~hv~s~~a~~~i~~ar~~~~~~G 279 (592)
++|+....... |. ..+..++++ +..+ +.|+..-.. +.++.+++. |
T Consensus 142 ~~H~~e~~~~~---------g~----------------~~i~~~~~~----~~~~-i~H~~~l~~-~~~~~la~~----g 186 (263)
T cd01305 142 AIHASETRESV---------GM----------------TDIERALDL----EPDL-LVHGTHLTD-EDLELVREN----G 186 (263)
T ss_pred EEecCCCCCCC---------Cc----------------hhHHHHHhC----CCCE-EEEcCCCCH-HHHHHHHHc----C
Confidence 99975432100 00 011222222 2222 455543222 335666666 7
Q ss_pred Cceeee-eecccceeecCCCCCCCcccccccceecCCCCCCCCCHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCC
Q psy6858 280 KHCTLY-GETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFT 358 (592)
Q Consensus 280 ~~~~v~-~e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~ 358 (592)
+ .+. +......+ . ...+| +.++++.|+.+++|||...++.. .. |
T Consensus 187 ~--~v~~~P~sn~~l-------------~---~g~~p----------~~~l~~~Gv~v~lGtD~~~~~~~-~~-----~- 231 (263)
T cd01305 187 V--PVVLCPRSNLYF-------------G---VGIPP----------VAELLKLGIKVLLGTDNVMVNEP-DM-----W- 231 (263)
T ss_pred C--cEEEChhhHHHh-------------C---CCCCC----------HHHHHHCCCcEEEECCCCccCCC-CH-----H-
Confidence 7 332 22111110 0 01133 34799999999999997553311 11 1
Q ss_pred cCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHHH
Q psy6858 359 HIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKI 400 (592)
Q Consensus 359 ~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~ 400 (592)
-+.++.....+.. ..+++.++++++|.|+||+
T Consensus 232 --------~~~~~~~~~~~~~--~~~~~~~~l~~aT~~gA~~ 263 (263)
T cd01305 232 --------AEMEFLAKYSRLQ--GYLSPLEILRMATVNAAEF 263 (263)
T ss_pred --------HHHHHHHHHhccc--ccCCHHHHHHHHhhccccC
Confidence 1444444333322 2679999999999999984
No 114
>PRK06886 hypothetical protein; Validated
Probab=99.39 E-value=9.3e-11 Score=121.41 Aligned_cols=266 Identities=16% Similarity=0.191 Sum_probs=143.6
Q ss_pred CccccCcCcccccC-----------C--------------CCChhhHHH----HHHHHHcCCeeEEecccc--CCCCccH
Q psy6858 72 GGIDPHTHFELELM-----------G--------------ATSVDDFYH----GTKAAVAGGTTTIIDFAL--PRKGESL 120 (592)
Q Consensus 72 G~ID~HtH~~~~~~-----------~--------------~~~~d~~~~----~~~~ala~GtTti~d~~~--~~~~~~~ 120 (592)
||||+|+|++..+. + .++.+|++. ..+.+++.|||-++.|+. +..+...
T Consensus 21 gfv~~H~HlDk~~~~~~~~~~~~~~g~l~e~i~~~~~~k~~~t~~dv~~Ra~~~l~~~~~~Gtt~iRtHvdvd~~~~l~~ 100 (329)
T PRK06886 21 GWVNAHAHADRAFTMTPEKIAIYHYANLQQKWDLVDEVKRNSTVEDYYARFSQAIELMISQGVTAFGTFVDIDPICEDRA 100 (329)
T ss_pred CCccccccccccccCCCccccccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHcCcccEeeeeccCCCccccH
Confidence 79999999965321 1 123344443 444667899999999984 3335566
Q ss_pred HHHHHHHHHHhccCceeee-eccccccCCChHHHHHHHHHHHHcCCcEEEEEEeeC--CCcCCCHHHHHHHHHHHHHcCC
Q psy6858 121 IKTYESWRQKADEKVCCDY-ALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYK--GLYMLSDGELYDAFSAIKNLGA 197 (592)
Q Consensus 121 ~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lv~~~Gv~~~k~~~~~~--~~~~~~~~~l~~~~~~a~~~g~ 197 (592)
.+++.+.++......-+.+ .+....- ..+...+.+++.++. +..+... .+. .....+++.+..+++.|+++|+
T Consensus 101 ~~a~~~~r~~~~~~idlq~vafPq~g~-~~~~~~~l~~~al~~--advvGGi-P~~~~~~~~~~~e~l~~~~~lA~~~g~ 176 (329)
T PRK06886 101 IIAAHKAREVYKHDIILKFANQTLKGV-IEPTAKKWFDIGSEM--VDMIGGL-PYRDELDYGRGLEAMDILLDTAKSLGK 176 (329)
T ss_pred HHHHHHHHHHhcCcceEEEEecChhhc-cCccHHHHHHHHHHh--CCEEeCc-cCCcCCCCCCCHHHHHHHHHHHHHcCC
Confidence 7777777666554333222 2221111 122233344443332 2222221 111 1234567889999999999999
Q ss_pred eEEEecCch-hhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCEEEEecccHH------HHHHHHH
Q psy6858 198 IAMVHAENG-EIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIMSKA------AGDAMAY 270 (592)
Q Consensus 198 ~~~vHae~~-~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~i~hv~s~~------a~~~i~~ 270 (592)
.+.+|+... +........+. .+.++ .-..-++.+.|+.+-. ..+.++.
T Consensus 177 ~Id~Hlde~~~~~~~~le~l~-----------------------~~~~~--~Gl~grV~~sH~~~L~~~~~~~~~~~i~~ 231 (329)
T PRK06886 177 MVHVHVDQFNTPKEKETEQLC-----------------------DKTIE--HGMQGRVVAIHGISIGAHSKEYRYRLYQK 231 (329)
T ss_pred CeEEeECCCCchhHHHHHHHH-----------------------HHHHH--cCCCCCEEEEEeccccCcChhhHHHHHHH
Confidence 999997542 21111111111 11111 1123477788877433 3345666
Q ss_pred HHHHHHhcCCceeeee-ecccceeecCCCCCCCcccccccceecCCCCCCCCCHHHHHHHHhcCCceEEeCCCCCCChhh
Q psy6858 271 KRKELMKKGKHCTLYG-ETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQ 349 (592)
Q Consensus 271 ar~~~~~~G~~~~v~~-e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~ 349 (592)
+++. |+ .|.. +.++.++......+ |++ .....+.++++.|+.+.+|||+..-.
T Consensus 232 La~a----gi--~Vv~~P~snl~l~~~~~~~--------------p~~---rGv~pv~eL~~aGV~V~lGtDnv~D~--- 285 (329)
T PRK06886 232 MREA----DM--MVIACPMAWIDSNRKEDLM--------------PFH---NALTPADEMIPEGITVALGTDNICDY--- 285 (329)
T ss_pred HHHc----CC--eEEECchhhhhhccccccC--------------cCC---CCCCCHHHHHHCCCeEEEecCCCccc---
Confidence 6666 88 5433 33222111111111 111 11223458999999999999985321
Q ss_pred hhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHHHcCCC
Q psy6858 350 KELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLY 404 (592)
Q Consensus 350 ~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~lgl~ 404 (592)
|. |.|...+-..|..... . ....++.++++++|.|+|+++|++
T Consensus 286 -------~~--p~g~~Dmle~~~l~~~-~--~~~~~~~~~l~maT~~gAraLgl~ 328 (329)
T PRK06886 286 -------MV--PLCEGDMWQELSLLAA-G--CRFYDLDEMVNIASINGRKVLGLE 328 (329)
T ss_pred -------CC--CCCCCCHHHHHHHHHH-H--cCCCCHHHHHHHHhhhHHHHhCCC
Confidence 11 3333333333333332 1 122378999999999999999984
No 115
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=99.37 E-value=2.3e-11 Score=122.27 Aligned_cols=251 Identities=18% Similarity=0.122 Sum_probs=136.0
Q ss_pred ccccCcCcccccCCC------------CC----hhhHHHHHHHHHcCCeeEEeccccCCCCc---cHHHHHHHHHHHh-c
Q psy6858 73 GIDPHTHFELELMGA------------TS----VDDFYHGTKAAVAGGTTTIIDFALPRKGE---SLIKTYESWRQKA-D 132 (592)
Q Consensus 73 ~ID~HtH~~~~~~~~------------~~----~d~~~~~~~~ala~GtTti~d~~~~~~~~---~~~~a~~~~~~~~-~ 132 (592)
|||+|+|+..+.... .+ ..+.....+.++++||||++++....... ...+.+.+..... .
T Consensus 1 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvttv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (275)
T cd01292 1 FIDTHVHLDGSALRGTRLNLELKEAEELSPEDLYEDTLRALEALLAGGVTTVVDMGSTPPPTTTKAAIEAVAEAARASAG 80 (275)
T ss_pred CcccchhhHHHHHccCCCccccccccccCHHHHHHHHHHHHHHHHhcCceEEEeeEeecCccccchHHHHHHHHHHHhcC
Confidence 799999986543321 11 23345567778999999999987544331 1222222222222 1
Q ss_pred cCceeeeeccccccC----CChHHHHHHHHHHHHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchhh
Q psy6858 133 EKVCCDYALHVGITW----WSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEI 208 (592)
Q Consensus 133 ~~~~~~~~~~~~~~~----~~~~~~~~~~~lv~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~ 208 (592)
......++.+..... ..+...+++..+.+ .|+.+++....+.. ...+++.++++++.|+++++++.+|+.+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~gi~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~i~~H~~~~~~ 158 (275)
T cd01292 81 IRVVLGLGIPGVPAAVDEDAEALLLELLRRGLE-LGAVGLKLAGPYTA-TGLSDESLRRVLEEARKLGLPVVIHAGELPD 158 (275)
T ss_pred eeeEEeccCCCCccccchhHHHHHHHHHHHHHh-cCCeeEeeCCCCCC-CCCCcHHHHHHHHHHHHcCCeEEEeeCCccc
Confidence 112222222211100 01122233333322 37777776544322 2248899999999999999999999876431
Q ss_pred hHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCEEEEecccHHHHHHHHHHHHHHHhcCCceeeeeec
Q psy6858 209 IDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGET 288 (592)
Q Consensus 209 i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~ 288 (592)
. . ..+.+.+.+... +.++.+.|+.... .+.++.+++. |+ +.++
T Consensus 159 ~--------------------~-------~~~~~~~~~~~~-~~~~~~~H~~~~~-~~~~~~~~~~----g~----~~~~ 201 (275)
T cd01292 159 P--------------------T-------RALEDLVALLRL-GGRVVIGHVSHLD-PELLELLKEA----GV----SLEV 201 (275)
T ss_pred C--------------------c-------cCHHHHHHHHhc-CCCEEEECCccCC-HHHHHHHHHc----CC----eEEE
Confidence 1 0 011223333332 6788999998742 2344555555 54 4444
Q ss_pred ccceeecCCCCCCCcccccccceecCCCCCCCCCHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchh
Q psy6858 289 LAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQ 368 (592)
Q Consensus 289 ~~~~l~~d~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e 368 (592)
++.+..... ........+..+++.|..+++|||+.+.+..... ..+
T Consensus 202 ~~~~~~~~~--------------------~~~~~~~~~~~~~~~g~~~~lgTD~~~~~~~~~~--------------~~~ 247 (275)
T cd01292 202 CPLSNYLLG--------------------RDGEGAEALRRLLELGIRVTLGTDGPPHPLGTDL--------------LAL 247 (275)
T ss_pred CCccccccc--------------------CCcCCcccHHHHHHCCCcEEEecCCCCCCCCCCH--------------HHH
Confidence 544332211 0012234466789999999999998765211000 002
Q ss_pred hHHHHHHHhhccCCCCCHHHHHHHHhHhHHHH
Q psy6858 369 DRLSVIWEKGVVPGILSPEKFVAVTSTNAAKI 400 (592)
Q Consensus 369 ~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~ 400 (592)
.+...... ..+++..++++++|.|||++
T Consensus 248 ~~~~~~~~----~~~~~~~~~~~~~t~n~a~~ 275 (275)
T cd01292 248 LRLLLKVL----RLGLSLEEALRLATINPARA 275 (275)
T ss_pred HHHHHHHH----hcCCCHHHHHHHHhccccCC
Confidence 22211111 11279999999999999974
No 116
>PF07969 Amidohydro_3: Amidohydrolase family; InterPro: IPR013108 Amidohydrolases are a diverse superfamily of enzymes which catalyse the hydrolysis of amide or amine bonds in a large number of different substrates including urea, cytosine, AMP, formylmethanofuran, etc [, ]. Also included in this superfamily are the phopshotriesterase enzymes, which hydrolyse P-O bonds. Members participate in a large number of processes including nucleotide metabolism, detoxification and neuronal development. They use a variety of divalent metal cofactors for catalysis: for example adenosine deaminase binds a single zinc ion, phopsphotriesterase binds two, while urease binds nickel. It has been postulated that since some of these proteins, such as those some of those involved in neuronal devlopment, appear to have lost their metal-binding centres, their function may simply be to bind, but not hydrolyse, their target molecules. This entry represents a subset of amidohydrolase domains that participate in different functions including cytosine degradation, atrazine degradation and other metabolic processes. The structure of the domain from Escherichia coli has been studied, and like other amidohydrolases it forms a classical alpha-beta TIM-barrel fold []. The active site is located in the mouth of the enzyme barrel and contains a bound iron ion that coordinates a hydroxyl nucleophile. Substrate binding involves a significant conformational change that sequesters the reaction complex from solvent.; PDB: 4F0R_A 4F0S_A 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A ....
Probab=99.35 E-value=1.5e-11 Score=132.13 Aligned_cols=182 Identities=20% Similarity=0.132 Sum_probs=100.7
Q ss_pred eCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCC
Q psy6858 174 YKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCP 253 (592)
Q Consensus 174 ~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~p 253 (592)
+++....+++++.++++.+.+.|+.+.+|+.....+..... ++.-....
T Consensus 216 ~~g~~~~~~~~l~~~v~~a~~~g~~v~vHa~gd~a~~~~l~----------------------------a~~~~~~~--- 264 (404)
T PF07969_consen 216 ISGLPSFDPEELEELVRAAREAGLQVAVHAIGDRAIDEALD----------------------------AIEAARAR--- 264 (404)
T ss_dssp ETC--SSSHHHHHHHHHHHHHCT-EEEEEEESHHHHHHHHH----------------------------HHHHHTCC---
T ss_pred ccccccccchhHHHHHHHHHhcCCeeEEEEcCCchHHhHHH----------------------------HHHhhccc---
Confidence 44566678889999999999999999999966443322221 11111111
Q ss_pred EEEEecccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCc-ccccccceecCCCCCCCCCHHHHHHHHhc
Q psy6858 254 LYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCT-WHDQAAHVLSPPLRPDETTPTHLLTLLNE 332 (592)
Q Consensus 254 l~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~-~~~~~~~~~~pplr~~~~~~~~l~~~l~~ 332 (592)
..+.|+.-.. .+.+.+.++. |+ ..++.++++..++...... +.. .. ......+..+++.
T Consensus 265 ~~i~h~~~~~-~~~~~~~~~l----~~----~~~~~p~~~~~~~~~~~~~~~~~-~~----------~~~~~~~~~~~~~ 324 (404)
T PF07969_consen 265 GRIEHAELID-PDDIERMAEL----GV----TASVQPHFLFSWGGEWYEERLGP-ER----------ARRIYPIRSLLDA 324 (404)
T ss_dssp HEEEEHCBCC-HHHHHHHHHH----TT----EEEECCTHHHHETEETHHHHHHH-HC----------GGGBTHHHHHHHC
T ss_pred ceeeccccCC-HHHHHHHHHh----CC----ccccChhHhhhccchhhhhhhhh-HH----------HHHHhHHHHHHhc
Confidence 1566665333 2334444444 55 3333333333332111110 000 00 1112456689999
Q ss_pred CCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHh------hccCCCCCHHHHHHHHhHhHHHHcCCCCC
Q psy6858 333 NALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEK------GVVPGILSPEKFVAVTSTNAAKIFNLYPK 406 (592)
Q Consensus 333 G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~------~v~~~~l~~~e~v~~~T~n~Ak~lgl~~~ 406 (592)
|+.++++||+......... ++.......... ......+|++|+|++.|.|||+.+|++++
T Consensus 325 Gv~v~~gsD~p~~~~~P~~--------------~~~~~~~~~~~~~~~~~~~~~~~~ls~~eAl~~~T~~~A~~~g~~~~ 390 (404)
T PF07969_consen 325 GVRVALGSDAPVSPPNPFR--------------GIWAAVTRQMAGERSGPVLGPEQRLSLEEALRAYTSNPARALGLEDR 390 (404)
T ss_dssp TTEEEE--TTTTSSCCHHH--------------HHHHHHHHHHCHHTHHHCCGGTGSSHHHHHHHHTTHHHHHHTT-TTT
T ss_pred cCceecCcCCcccccCcch--------------hhhhhhccccccccccccccccccCCHHHHHHHHhHHHHHHcCCCCC
Confidence 9999999998642211100 111111111100 01127899999999999999999999988
Q ss_pred CccccCCCCccEEE
Q psy6858 407 KGVIAEGSDADIVV 420 (592)
Q Consensus 407 ~G~I~~G~~ADlVv 420 (592)
+|+|++||+|||||
T Consensus 391 ~Gsl~~Gk~AD~vV 404 (404)
T PF07969_consen 391 KGSLEPGKLADFVV 404 (404)
T ss_dssp SSSSSTTSBS-EEE
T ss_pred cceECCCCCcCeEC
Confidence 89999999999997
No 117
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=98.69 E-value=1.6e-06 Score=86.80 Aligned_cols=243 Identities=16% Similarity=0.090 Sum_probs=126.8
Q ss_pred ccccCcCcccccCCCCChhhHHHHHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccccc-cCCChH
Q psy6858 73 GIDPHTHFELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVGI-TWWSDQ 151 (592)
Q Consensus 73 ~ID~HtH~~~~~~~~~~~d~~~~~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 151 (592)
+||+|+|+...... .+...-.+.+.+.|+++++.+... .. ..+.+.++.... ....+..++|... ..+.+.
T Consensus 1 ~~D~H~H~~~~~~~----~~~~~~l~~~~~~gv~~~v~~~~~--~~-~~~~~~~la~~~-~~i~~~~G~hP~~~~~~~~~ 72 (251)
T cd01310 1 LIDTHCHLDFPQFD----ADRDDVLARAREAGVIKIIVVGTD--LK-SSKRALELAKKY-DNVYAAVGLHPHDADEHVDE 72 (251)
T ss_pred CEEeeeCCCchhhc----cCHHHHHHHHHHcCCCEEEEeCCC--HH-HHHHHHHHHHhC-CCeEEEEeeCcchhhcCCHH
Confidence 68999999643211 223333555667888888766332 11 222222222222 3344556777432 112233
Q ss_pred HHHHHHHHHHHcCCcEE-EEEEeeCCCcC---CCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCc
Q psy6858 152 VQQEMAELCEKHGVNSF-KTFMAYKGLYM---LSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGH 227 (592)
Q Consensus 152 ~~~~~~~lv~~~Gv~~~-k~~~~~~~~~~---~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~ 227 (592)
..++++++++..++..+ .+.+.+..... ..++.++.+++.|+++++++.+|+...
T Consensus 73 ~~~~l~~~~~~~~~~~IGeiGld~~~~~~~~~~q~~~~~~~~~~a~e~~~pv~iH~~~~--------------------- 131 (251)
T cd01310 73 DLDLLELLAANPKVVAIGEIGLDYYRDKSPREVQKEVFRAQLELAKELNLPVVIHSRDA--------------------- 131 (251)
T ss_pred HHHHHHHHhcCCCEEEEEeeecCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeCc---------------------
Confidence 46677777654455444 22222221111 234558899999999999999997642
Q ss_pred cCCCcHHHHHHHHHHHHHHhcccC-CCEEEEecccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCcccc
Q psy6858 228 QLSRPEEVEAEAVTRACTIANQVD-CPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHD 306 (592)
Q Consensus 228 ~~s~p~~~e~eav~~~i~la~~~~-~pl~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~~ 306 (592)
+. ..++++++.+ ....+.|..+.. .+.+..+.+. |+ .+ .+++..+.
T Consensus 132 ----~~--------~~~~l~~~~~~~~~~i~H~~~~~-~~~~~~~~~~----g~--~~---------~~~~~~~~----- 178 (251)
T cd01310 132 ----HE--------DVLEILKEYGPPKRGVFHCFSGS-AEEAKELLDL----GF--YI---------SISGIVTF----- 178 (251)
T ss_pred ----hH--------HHHHHHHhcCCCCCEEEEccCCC-HHHHHHHHHc----CC--EE---------Eeeeeecc-----
Confidence 11 1234555554 344455766532 2333444334 55 11 11111000
Q ss_pred cccceecCCCCCCCCCHHHHHHHHhcC--CceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCC
Q psy6858 307 QAAHVLSPPLRPDETTPTHLLTLLNEN--ALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGIL 384 (592)
Q Consensus 307 ~~~~~~~pplr~~~~~~~~l~~~l~~G--~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l 384 (592)
.....+.++++.+ ..+.++||+.-.... .. .|..+....+..++.++....++
T Consensus 179 --------------~~~~~~~~~~~~~~~dril~~TD~p~~~~~-~~----------~~~~~~~~~~~~~~~~la~~~gl 233 (251)
T cd01310 179 --------------KNANELREVVKEIPLERLLLETDSPYLAPV-PF----------RGKRNEPAYVKHVAEKIAELKGI 233 (251)
T ss_pred --------------CCCHHHHHHHHhCChHHEEEcccCCCCCCC-CC----------CCCCCCChhHHHHHHHHHHHHCc
Confidence 0112233445544 367999998432211 00 01112233344555555555789
Q ss_pred CHHHHHHHHhHhHHHHcC
Q psy6858 385 SPEKFVAVTSTNAAKIFN 402 (592)
Q Consensus 385 ~~~e~v~~~T~n~Ak~lg 402 (592)
+.+++.++.+.|++++||
T Consensus 234 ~~e~~~~~~~~N~~~ll~ 251 (251)
T cd01310 234 SVEEVAEVTTENAKRLFG 251 (251)
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 999999999999999986
No 118
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=98.59 E-value=3.1e-06 Score=84.74 Aligned_cols=125 Identities=16% Similarity=0.144 Sum_probs=70.0
Q ss_pred ccccCcCcccccCCCCChhhHHHHHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccccccCC-ChH
Q psy6858 73 GIDPHTHFELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVGITWW-SDQ 151 (592)
Q Consensus 73 ~ID~HtH~~~~~~~~~~~d~~~~~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 151 (592)
+||+|+|+...... ++...-.+.+...|+++++.+... .... +.+.+..+... +..+..++|...... ...
T Consensus 1 ~iD~H~Hl~~~~~~----~~~~~~~~~~~~~Gv~~~v~~~~~--~~~~-~~~~~~~~~~~-~i~~~~GihP~~~~~~~~~ 72 (252)
T TIGR00010 1 LIDAHCHLDFLDFE----EDVEEVIERAKAAGVTAVVAVGTD--LEDF-LRALELAEKYP-NVYAAVGVHPLDVDDDTKE 72 (252)
T ss_pred CEEeccCCCChhhc----cCHHHHHHHHHHcCCCEEEEecCC--HHHH-HHHHHHHHHCC-CEEEEEEeCcchhhcCCHH
Confidence 68999998643211 133344666777899999865322 1122 22323333333 677778887522111 234
Q ss_pred HHHHHHHHHHHcCCcEEEEE-EeeCCCcCC---CHHHHHHHHHHHHHcCCeEEEecCc
Q psy6858 152 VQQEMAELCEKHGVNSFKTF-MAYKGLYML---SDGELYDAFSAIKNLGAIAMVHAEN 205 (592)
Q Consensus 152 ~~~~~~~lv~~~Gv~~~k~~-~~~~~~~~~---~~~~l~~~~~~a~~~g~~~~vHae~ 205 (592)
..+++++++++.++..+... +.+.....- ..+.|.+.++.|+++|.++.+|+..
T Consensus 73 ~~~~l~~~l~~~~~~~iGEiGld~~~~~~~~~~q~~~~~~~~~~a~~~~~pv~iH~~~ 130 (252)
T TIGR00010 73 DIKELERLAAHPKVVAIGETGLDYYKADEYKRRQEEVFRAQLQLAEELNLPVIIHARD 130 (252)
T ss_pred HHHHHHHHccCCCEEEEEecccCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEecC
Confidence 45667766654444444322 222111110 1256888899999999999999864
No 119
>COG0418 PyrC Dihydroorotase [Nucleotide transport and metabolism]
Probab=98.49 E-value=1.2e-05 Score=79.52 Aligned_cols=212 Identities=18% Similarity=0.166 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHcCCcEEEEEEeeC----CCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCc
Q psy6858 152 VQQEMAELCEKHGVNSFKTFMAYK----GLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGH 227 (592)
Q Consensus 152 ~~~~~~~lv~~~Gv~~~k~~~~~~----~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~ 227 (592)
..+++++..++..+..+|.|.+-- ....-+-+.++.+++...+.|++..||.|-.+......
T Consensus 83 ~peel~~a~~~g~i~a~KlYPaGaTTNS~~GV~~~~~~~pvle~Mq~~gmpLlvHGEvt~~~vDif-------------- 148 (344)
T COG0418 83 TPEELEEAKAKGVIRAVKLYPAGATTNSDSGVTDIEKIYPVLEAMQKIGMPLLVHGEVTDAEVDIF-------------- 148 (344)
T ss_pred CHHHHHHHHhcCcEEEEEeccCCccccCcCCcCcHHHHHHHHHHHHHcCCeEEEecccCCccccch--------------
Confidence 356677765554488899886421 11112356799999999999999999987543221100
Q ss_pred cCCCcHHHHHHHHHHHH-HHh-cccCCCEEEEecccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCccc
Q psy6858 228 QLSRPEEVEAEAVTRAC-TIA-NQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWH 305 (592)
Q Consensus 228 ~~s~p~~~e~eav~~~i-~la-~~~~~pl~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~ 305 (592)
.| |..-+...+ .+. +.....+.+.|+.++++.+.|+.+ +. ++.+..+++||..+-.+...- .
T Consensus 149 --dr----E~~Fi~~vl~pl~~~fP~LKIV~EHiTT~dav~~v~~~-------~~--nlaATIT~hHL~~nrnd~l~G-g 212 (344)
T COG0418 149 --DR----EAAFIESVLEPLRQRFPKLKIVLEHITTKDAVEYVKDA-------NN--NLAATITPHHLLLNRNDMLVG-G 212 (344)
T ss_pred --hh----HHHHHHHHHHHHHhhCCcceEEEEEeccHHHHHHHHhc-------Cc--ceeeEeehhheeeehhhhhcC-C
Confidence 00 001111111 122 334788999999999999998765 55 689999999999887665421 0
Q ss_pred ccccceecCCCCCCCCCHHHHHHHHhcCC-ceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhh---HHHHHHHhhccC
Q psy6858 306 DQAAHVLSPPLRPDETTPTHLLTLLNENA-LQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQD---RLSVIWEKGVVP 381 (592)
Q Consensus 306 ~~~~~~~~pplr~~~~~~~~l~~~l~~G~-~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~---~~~~~~~~~v~~ 381 (592)
-...+.|-|-+.. ..++.+|.++..+|. ...+|||..|.....|.- ..|.+|+.. .++.+.+-+-+.
T Consensus 213 i~Ph~fClPilKr-~~hr~AL~~aa~sg~~kfFlGtDSAPH~~~~Ke~--------~cgcAG~fsap~al~~~AevFE~~ 283 (344)
T COG0418 213 IRPHLFCLPILKR-ETHREALREAATSGHPKFFLGTDSAPHARSRKES--------ACGCAGIFSAPFALPLYAEVFEEE 283 (344)
T ss_pred CCcceeeeccccc-hhhHHHHHHHHhcCCCcEEecCCCCCCccccccc--------ccccccccccHhHHHHHHHHHHHh
Confidence 0124456666665 788999999988887 589999999988765532 234455433 333333322233
Q ss_pred CCCCHHHHHHHHhHhHHHHcCCC
Q psy6858 382 GILSPEKFVAVTSTNAAKIFNLY 404 (592)
Q Consensus 382 ~~l~~~e~v~~~T~n~Ak~lgl~ 404 (592)
+ .++.+=+.+|.|+.+++|+.
T Consensus 284 n--aL~~LeaF~S~nGp~fY~lp 304 (344)
T COG0418 284 N--ALDNLEAFASDNGPKFYGLP 304 (344)
T ss_pred c--HHHHHHHHHhhcCcceeccc
Confidence 3 35556677899999999994
No 120
>PRK10812 putative DNAse; Provisional
Probab=98.43 E-value=2.5e-05 Score=78.99 Aligned_cols=247 Identities=15% Similarity=0.080 Sum_probs=128.3
Q ss_pred ccccCcCcccccCCCCChhhHHHHHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccccccCCChHH
Q psy6858 73 GIDPHTHFELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVGITWWSDQV 152 (592)
Q Consensus 73 ~ID~HtH~~~~~~~~~~~d~~~~~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (592)
+||+|||+..+..... .++...-.+.|...|+..++... ....+...+++..... ......+|+|..... .+..
T Consensus 3 ~iDtH~Hl~~~~~~~~-~~d~~~vl~~a~~~gv~~~~~~~--~~~~~~~~~~~l~~~~--~~v~~~~GiHP~~~~-~~~~ 76 (265)
T PRK10812 3 LVDSHCHLDGLDYQSL-HKDVDDVLAKAAARDVKFCLAVA--TTLPGYRHMRDLVGER--DNVVFSCGVHPLNQD-EPYD 76 (265)
T ss_pred eEEeccCCCCccchhh-hcCHHHHHHHHHHcCCCEEEEeC--CCHHHHHHHHHHHhhC--CCeEEEEEeCCCCCC-ChhH
Confidence 7999999964211111 13455557777788998775432 2222233333332222 236667888874332 2334
Q ss_pred HHHHHHHHHHcCCcEE-EEEEeeCCCcC---CCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCcc
Q psy6858 153 QQEMAELCEKHGVNSF-KTFMAYKGLYM---LSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQ 228 (592)
Q Consensus 153 ~~~~~~lv~~~Gv~~~-k~~~~~~~~~~---~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~ 228 (592)
.++++++++...+..+ .+.+.|..... ...+-|.+.++.|++++.++.+|+.... .+
T Consensus 77 ~~~l~~~~~~~~vvaIGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~e~~~Pv~iH~r~a~--~~----------------- 137 (265)
T PRK10812 77 VEELRRLAAEEGVVAMGETGLDYYYTPETKVRQQESFRHHIQIGRELNKPVIVHTRDAR--AD----------------- 137 (265)
T ss_pred HHHHHHHhcCCCEEEEEeeecCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeCch--HH-----------------
Confidence 5667766654344444 34444431111 1223377888999999999999986532 01
Q ss_pred CCCcHHHHHHHHHHHHHHhcccCCC--EEEEecccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCcccc
Q psy6858 229 LSRPEEVEAEAVTRACTIANQVDCP--LYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHD 306 (592)
Q Consensus 229 ~s~p~~~e~eav~~~i~la~~~~~p--l~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~~ 306 (592)
.+.+.++.+.+ --+.|+.+.. .+....+.+. |. +++.++....
T Consensus 138 --------------~l~iL~~~~~~~~~~v~H~fsG~-~~~a~~~~~~----G~-----------~is~~g~~t~----- 182 (265)
T PRK10812 138 --------------TLAILREEKVTDCGGVLHCFTED-RETAGKLLDL----GF-----------YISFSGIVTF----- 182 (265)
T ss_pred --------------HHHHHHhhcCCCCCEEEEeecCC-HHHHHHHHHC----CC-----------EEEECeeeec-----
Confidence 11112211111 1246776543 3333444334 66 2233222111
Q ss_pred cccceecCCCCCCCCCHHHHHHHHhcC--CceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCC
Q psy6858 307 QAAHVLSPPLRPDETTPTHLLTLLNEN--ALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGIL 384 (592)
Q Consensus 307 ~~~~~~~pplr~~~~~~~~l~~~l~~G--~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l 384 (592)
.....+.++++.+ ....+.||. |+.......|+ +|. ...+..+.+....-.++
T Consensus 183 --------------~~~~~~~~~~~~ipldrlLlETD~-P~~~p~~~~g~------~n~----P~~i~~v~~~ia~l~g~ 237 (265)
T PRK10812 183 --------------RNAEQLRDAARYVPLDRLLVETDS-PYLAPVPHRGK------ENQ----PAMVRDVAEYMAVLKGV 237 (265)
T ss_pred --------------CccHHHHHHHHhCChhhEEEecCC-CCCCCcCCCCC------CCC----cHHHHHHHHHHHHHhCC
Confidence 1123445566665 467888986 33222111111 011 12233333333344679
Q ss_pred CHHHHHHHHhHhHHHHcCCC
Q psy6858 385 SPEKFVAVTSTNAAKIFNLY 404 (592)
Q Consensus 385 ~~~e~v~~~T~n~Ak~lgl~ 404 (592)
+.+++.+.++.|+.++|++.
T Consensus 238 ~~eei~~~~~~N~~~lf~~~ 257 (265)
T PRK10812 238 SVEELAQVTTDNFARLFHID 257 (265)
T ss_pred CHHHHHHHHHHHHHHHHCCC
Confidence 99999999999999999983
No 121
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=98.40 E-value=2.6e-05 Score=80.09 Aligned_cols=261 Identities=16% Similarity=0.113 Sum_probs=127.5
Q ss_pred CccccCcCcccccCC---------CCChhh---HHHHHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeee
Q psy6858 72 GGIDPHTHFELELMG---------ATSVDD---FYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDY 139 (592)
Q Consensus 72 G~ID~HtH~~~~~~~---------~~~~d~---~~~~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 139 (592)
|++.+|=|+...+.. ....++ .....+.+.+.|+||++|......+.+.....+.. ........+..
T Consensus 1 g~~~~heh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvttiv~~~~~~~~~~~~~~~~~~-~~~g~~v~~~~ 79 (293)
T cd00530 1 GVTLTHEHLIIDSSGFVRDPPEVDDFDLADVEAAKEELKRFRAHGGRTIVDATPPGIGRDVEKLAEVA-RATGVNIVAAT 79 (293)
T ss_pred CcccccCCeeecChhhccCcccccccchhhHHHHHHHHHHHHHcCCCeEEEcCCcccCcCHHHHHHHH-HHhCCcEEEec
Confidence 678888888443211 122222 23345567789999999886432233333333222 22222456677
Q ss_pred ecccccc--C-CChHHHHHHHH----HHHH----cCCc--EEE-EEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCc
Q psy6858 140 ALHVGIT--W-WSDQVQQEMAE----LCEK----HGVN--SFK-TFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAEN 205 (592)
Q Consensus 140 ~~~~~~~--~-~~~~~~~~~~~----lv~~----~Gv~--~~k-~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~ 205 (592)
|+|.... . ..+...+++.+ .+.+ .++. .++ +...+ .......+.|.+.++.|+++|+++++|+..
T Consensus 80 G~hp~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~i~~~~IGEigld~-~~~~~q~~~f~~~~~lA~~~~~Pv~iH~~~ 158 (293)
T cd00530 80 GFYKDAFYPEWVRLRSVEELTDMLIREIEEGIEGTGIKAGIIKEAGGSP-AITPLEEKVLRAAARAQKETGVPISTHTQA 158 (293)
T ss_pred ccCCCccChHHHhhCCHHHHHHHHHHHHHhccccCCcCceEEEEeecCC-CCCHHHHHHHHHHHHHHHHHCCeEEEcCCC
Confidence 7775431 1 11111122222 1211 1221 122 12222 222223345888999999999999999875
Q ss_pred h-hhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCC---CEEEEecccHHHHHHHHHHHHHHHhcCCc
Q psy6858 206 G-EIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDC---PLYVVHIMSKAAGDAMAYKRKELMKKGKH 281 (592)
Q Consensus 206 ~-~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~---pl~i~hv~s~~a~~~i~~ar~~~~~~G~~ 281 (592)
. .... ..+.+....+. ++.+.|+......+.+..+.+. |.
T Consensus 159 ~~~~~~-------------------------------~~l~~l~~~g~~~~~~vi~H~~~~~~~~~~~~~~~~----G~- 202 (293)
T cd00530 159 GLTMGL-------------------------------EQLRILEEEGVDPSKVVIGHLDRNDDPDYLLKIAAL----GA- 202 (293)
T ss_pred CccccH-------------------------------HHHHHHHHcCCChhheEEeCCCCCCCHHHHHHHHhC----CC-
Confidence 3 1111 11222222333 2467788621223444444444 66
Q ss_pred eeeeeecccceeecCCCCCCCcccccccceecCCCCCCCCCHHHHHHHHhcCCc--eEEeCCCCCCChhhhhcCCCCCCc
Q psy6858 282 CTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENAL--QTTGSDNCTFNKNQKELGKDSFTH 359 (592)
Q Consensus 282 ~~v~~e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~--~~~gsD~~~~~~~~~~~g~~~f~~ 359 (592)
. +..++......+ ..++ +......+.++++.|.. ++++||..-.. .....+
T Consensus 203 -~---------i~~~~~~~~~~~-------~~~~---~~~~~~~l~~~~~~~~~d~ill~TD~p~~~-~~~~~~------ 255 (293)
T cd00530 203 -Y---------LEFDGIGKDKIF-------GYPS---DETRADAVKALIDEGYGDRLLLSHDVFRKS-YLEKRY------ 255 (293)
T ss_pred -E---------EEeCCCCccccc-------CCCC---HHHHHHHHHHHHHCCCcCCEEEeCCcCchh-hhhhcc------
Confidence 2 222221111000 0000 01134557788888874 59999964322 111111
Q ss_pred CCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHHHc
Q psy6858 360 IPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIF 401 (592)
Q Consensus 360 ~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~l 401 (592)
+-++... +...+...+...+++.+++.++++.||+++|
T Consensus 256 ---~~~~~~~-~~~~~~~~~~~~g~~~e~i~~~~~~N~~~lf 293 (293)
T cd00530 256 ---GGHGYDY-ILTRFIPRLRERGVTEEQLDTILVENPARFL 293 (293)
T ss_pred ---CCCChHH-HHHHHHHHHHHcCCCHHHHHHHHHHCHHHhC
Confidence 1122222 2222333445678899999999999999986
No 122
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=98.26 E-value=0.00011 Score=73.22 Aligned_cols=125 Identities=17% Similarity=0.146 Sum_probs=75.8
Q ss_pred ccccCcCcccccCCCCChhhHHHHHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeecccccc-CCChH
Q psy6858 73 GIDPHTHFELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVGIT-WWSDQ 151 (592)
Q Consensus 73 ~ID~HtH~~~~~~~~~~~d~~~~~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 151 (592)
+||+|||+..... .++...-...|...|++-++.... .-.+...+++....+. ..++..|+|.... .+.+.
T Consensus 3 liDtH~HL~~~~~----~~d~~~vi~~a~~~gv~~~~~~g~--~~~~~~~~~~la~~y~--~v~~~~G~HP~~~~~~~~~ 74 (256)
T COG0084 3 LIDTHCHLDFEEF----DEDRDEVIARAREAGVKKMVVVGT--DLEDFKRALELAEKYP--NVYAAVGVHPLDADEHSEE 74 (256)
T ss_pred cEEeeeCCCchhh----cCCHHHHHHHHHHcCCcEEEEeec--CHHHHHHHHHHHHhCC--CeEEEEeeCCCccccccHH
Confidence 7999999976322 233444466677788888864422 2223333444443333 5788888887661 22366
Q ss_pred HHHHHHHHHHH-cCCcEEE-EEEeeCCCcCC----CHHHHHHHHHHHHHcCCeEEEecCc
Q psy6858 152 VQQEMAELCEK-HGVNSFK-TFMAYKGLYML----SDGELYDAFSAIKNLGAIAMVHAEN 205 (592)
Q Consensus 152 ~~~~~~~lv~~-~Gv~~~k-~~~~~~~~~~~----~~~~l~~~~~~a~~~g~~~~vHae~ 205 (592)
..+++.+++.. ..+..+. +.+.|...... ..+-|.+.++.|++++.++.+|+.+
T Consensus 75 ~~~~l~~~~~~~~~vvaIGEiGLDy~~~~~~~~~~Q~~~F~~ql~lA~~~~lPviIH~R~ 134 (256)
T COG0084 75 DLEELEQLAEHHPKVVAIGEIGLDYYWDKEPDKERQEEVFEAQLELAKELNLPVIIHTRD 134 (256)
T ss_pred HHHHHHHHHhcCCCeEEEEecccCccccccccHHHHHHHHHHHHHHHHHcCCCEEEEccc
Confidence 77788888763 3444333 22233221111 2234788899999999999999876
No 123
>KOG2902|consensus
Probab=98.23 E-value=7.8e-05 Score=71.39 Aligned_cols=284 Identities=17% Similarity=0.133 Sum_probs=170.8
Q ss_pred EEeeCccccCcCcccccCCCCChhhHHHHHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHH---hccCceeeeecccc
Q psy6858 68 YVIPGGIDPHTHFELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQK---ADEKVCCDYALHVG 144 (592)
Q Consensus 68 ~V~PG~ID~HtH~~~~~~~~~~~d~~~~~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~~~~ 144 (592)
+-+|+.-|+|+|+....|-.... -....+|+.-..-|.+-.+.....++.-+++.. ...+...-++++..
T Consensus 5 l~i~~~~DmHvHlR~g~ml~aVv-------P~~a~ggvs~AyvMPNL~PPiTt~da~i~YkK~i~kL~skttfLMslYLs 77 (344)
T KOG2902|consen 5 LTITQPDDMHVHLRDGDMLHAVV-------PHSASGGVSRAYVMPNLKPPITTTDAAIIYKKFIMKLPSKTTFLMSLYLS 77 (344)
T ss_pred EecCCccceeEEeccCCeeeeec-------cccccCceeEEEEcCCCCCCcchHHHHHHHHHHHHhcCccceeEEEEeec
Confidence 34678899999996543321111 112357888887665544444445554444433 23333333333322
Q ss_pred ccCCChHHHHHHHHHHHHcCCcEEEEEEeeCC---CcCCC--HHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHc
Q psy6858 145 ITWWSDQVQQEMAELCEKHGVNSFKTFMAYKG---LYMLS--DGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAA 219 (592)
Q Consensus 145 ~~~~~~~~~~~~~~lv~~~Gv~~~k~~~~~~~---~~~~~--~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~ 219 (592)
.+...+++.+..+..++.++|.|.+--. ...++ -+.++-+|+...+.++++.+|-|-...
T Consensus 78 ----~~ttPe~I~eAa~~~~irgVK~YPaGaTTNS~~GV~~~f~~fyPvf~aMqe~nm~LnvHGEvpps----------- 142 (344)
T KOG2902|consen 78 ----DKTTPEEIREAAESGVIRGVKLYPAGATTNSQDGVTDLFGKFYPVFEAMQEQNMPLNVHGEVPPS----------- 142 (344)
T ss_pred ----CCCCHHHHHHHHHhCceeeEEeccCcccccccccccccchhhhHHHHHHHHcCceEEecCCCCCc-----------
Confidence 2223556666666668899998864211 11122 356888999999999999999775331
Q ss_pred CCCCCCCccCCCcHHHHHHHHHHHHHHh-cccCCCEEEEecccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCC
Q psy6858 220 GIKGPEGHQLSRPEEVEAEAVTRACTIA-NQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHAN 298 (592)
Q Consensus 220 G~~~p~~~~~s~p~~~e~eav~~~i~la-~~~~~pl~i~hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~ 298 (592)
..+|.+.+-+. =..++. .+- +..+..+.+.|+.+.++.+.++.++ +. .|-+...++||.++..
T Consensus 143 ----~D~~Vf~aE~~-Flptll---~LhqrfP~LKivlEHcTt~dAv~~ve~a~------~~--sVaaTvTahHL~Lt~~ 206 (344)
T KOG2902|consen 143 ----IDGHVFDAEKI-FLPTLL---QLHQRFPQLKIVLEHCTTMDAVNFVESAK------EG--SVAATVTAHHLLLTRN 206 (344)
T ss_pred ----cCCceecchhh-hHHHHH---HHHHhCccceeHHHhcccHHHHHHHHhhc------CC--ceeeEeehheeEEehh
Confidence 22344433221 122322 232 3346778899999999999999876 44 7888999999998876
Q ss_pred CCCCcccccccceecCCCCCCCCCHHHHHHHHhcCCc-eEEeCCCCCCChhhhhcCCCCCCcCCCCCcchh---hHHHHH
Q psy6858 299 QIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENAL-QTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQ---DRLSVI 374 (592)
Q Consensus 299 ~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G~~-~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e---~~~~~~ 374 (592)
++ .......|-|-... ..+.++|.++.-+|.+ ..+|||..|.....|.- ..|.+|+. ..++.+
T Consensus 207 dw----qg~P~nfCkPVaK~-e~dr~AlvkAatSg~pkFFfGsDSAPHprs~K~~--------~~~cAGvysqpfA~sy~ 273 (344)
T KOG2902|consen 207 DW----QGQPHNFCKPVAKR-EIDREALVKAATSGSPKFFFGSDSAPHPRSRKES--------SCGCAGVYSQPFALSYY 273 (344)
T ss_pred hh----cCCCcccccccccC-cccHHHHHHHHhcCCCceeecCCCCCCccccccc--------CCCcceeecccchHHHH
Confidence 63 22222234444443 6788999999888885 88999999988776542 12444443 233333
Q ss_pred HHhhccCCCCCHHHHHHHHhHhHHHHcCCC
Q psy6858 375 WEKGVVPGILSPEKFVAVTSTNAAKIFNLY 404 (592)
Q Consensus 375 ~~~~v~~~~l~~~e~v~~~T~n~Ak~lgl~ 404 (592)
.+-+-+.|.++ ..-..++.++-+++++-
T Consensus 274 A~VFde~gaLd--~Lk~F~s~fG~~FY~~p 301 (344)
T KOG2902|consen 274 AKVFDEAGALD--KLKAFTSFFGPDFYGLP 301 (344)
T ss_pred HHHHhhhchHH--HHhhhHhhcCcceeccc
Confidence 33222445443 34455777888888883
No 124
>PRK10425 DNase TatD; Provisional
Probab=98.18 E-value=0.00023 Score=71.60 Aligned_cols=125 Identities=11% Similarity=0.120 Sum_probs=71.9
Q ss_pred ccccCcCcccccCCCCChhhHHHHHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccccc-cCCChH
Q psy6858 73 GIDPHTHFELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVGI-TWWSDQ 151 (592)
Q Consensus 73 ~ID~HtH~~~~~~~~~~~d~~~~~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 151 (592)
+||+|||+...-. .++...-...|...||..++.... ..++...+.+....+. ...+.+|+|... ..+.+.
T Consensus 1 ~iDtH~HL~~~~~----~~d~~~vl~~a~~~gv~~~i~~~~--~~~~~~~~~~l~~~~~--~v~~~~GiHP~~~~~~~~~ 72 (258)
T PRK10425 1 MFDIGVNLTSSQF----AKDRDDVVARAFAAGVNGMLITGT--NLRESQQAQKLARQYP--SCWSTAGVHPHDSSQWQAA 72 (258)
T ss_pred CEEeeeCcCChhh----hccHHHHHHHHHHCCCCEEEEeCC--CHHHHHHHHHHHHhCC--CEEEEEEeCcCccccCCHH
Confidence 6899999964322 134555567777889888764422 2223333333333332 366778888743 334455
Q ss_pred HHHHHHHHHHHcCCcEEE-EEEeeCCCcCCC---HHHHHHHHHHHHHcCCeEEEecCc
Q psy6858 152 VQQEMAELCEKHGVNSFK-TFMAYKGLYMLS---DGELYDAFSAIKNLGAIAMVHAEN 205 (592)
Q Consensus 152 ~~~~~~~lv~~~Gv~~~k-~~~~~~~~~~~~---~~~l~~~~~~a~~~g~~~~vHae~ 205 (592)
..+.+.++.+...+..+. +.+.|....... .+-|.+.++.|++++.++.+|..+
T Consensus 73 ~~~~l~~~~~~~~~vaIGEiGLDy~~~~~~~~~Q~~vF~~ql~lA~~~~~Pv~iH~r~ 130 (258)
T PRK10425 73 TEEAIIELAAQPEVVAIGECGLDFNRNFSTPEEQERAFVAQLAIAAELNMPVFMHCRD 130 (258)
T ss_pred HHHHHHHhccCCCEEEEeeeeeccccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 566777766543332332 333432111111 133777889999999999999875
No 125
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=98.13 E-value=0.00026 Score=73.97 Aligned_cols=56 Identities=21% Similarity=0.139 Sum_probs=38.5
Q ss_pred HHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHHHcCC
Q psy6858 326 LLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNL 403 (592)
Q Consensus 326 l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~lgl 403 (592)
+.++++.|+.+++|||+..++.. .|...+..++...++++.+ +..+|.|+++..=+
T Consensus 257 i~~l~~~Gv~v~igTD~~~~~~~---------------------~l~~e~~~a~~~~~l~~~e-l~~~~~na~~~~f~ 312 (324)
T TIGR01430 257 LRRFLEAGVKVTLNSDDPAYFGS---------------------YLTEEYEIAAKHAGLTEEE-LKQLARNALEGSFL 312 (324)
T ss_pred HHHHHHCCCEEEECCCCCcccCC---------------------CHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHhCC
Confidence 44799999999999998654311 1122222334446899999 77889999987655
No 126
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=98.10 E-value=0.00046 Score=69.50 Aligned_cols=127 Identities=18% Similarity=0.164 Sum_probs=70.5
Q ss_pred eCccccCcCcccccCCCCChhhHHHHHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccccc-cCCC
Q psy6858 71 PGGIDPHTHFELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVGI-TWWS 149 (592)
Q Consensus 71 PG~ID~HtH~~~~~~~~~~~d~~~~~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~ 149 (592)
+.+||+|||+..... .++...-...+...|++.++.... ...+...+++..+.+ ...++.+|+|... ..+.
T Consensus 3 ~~~iD~HcHl~~~~~----~~~~~~~l~~a~~~gv~~~~~~~~--~~~~~~~~~~l~~~~--~~v~~~~GiHP~~~~~~~ 74 (258)
T PRK11449 3 CRFIDTHCHFDFPPF----SGDEEASLQRAAQAGVGKIIVPAT--EAENFARVLALAERY--QPLYAALGLHPGMLEKHS 74 (258)
T ss_pred ceEEEeccCCCChhh----ccCHHHHHHHHHHCCCCEEEEeeC--CHHHHHHHHHHHHhC--CCEEEEEeeCcCccccCC
Confidence 458999999964322 123334455666789988864422 222333333333222 2467778888743 2334
Q ss_pred hHHHHHHHHHHHHc--CCcEEE-EEEeeCCCcC---CCHHHHHHHHHHHHHcCCeEEEecCc
Q psy6858 150 DQVQQEMAELCEKH--GVNSFK-TFMAYKGLYM---LSDGELYDAFSAIKNLGAIAMVHAEN 205 (592)
Q Consensus 150 ~~~~~~~~~lv~~~--Gv~~~k-~~~~~~~~~~---~~~~~l~~~~~~a~~~g~~~~vHae~ 205 (592)
+...+++++++... .+..+. +.+.|..... ...+-|.+.++.|++++.++.+|+.+
T Consensus 75 ~~~~~~l~~~l~~~~~~~~aIGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~~~~~Pv~iH~r~ 136 (258)
T PRK11449 75 DVSLDQLQQALERRPAKVVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRR 136 (258)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEecccCCCCCCCCHHHHHHHHHHHHHHHHHhCCCEEEEecC
Confidence 45566666665421 122221 2222211111 12234788899999999999999876
No 127
>PRK09875 putative hydrolase; Provisional
Probab=98.02 E-value=0.00067 Score=69.31 Aligned_cols=256 Identities=15% Similarity=0.087 Sum_probs=136.5
Q ss_pred CccccCcCcccccCC-----CCChhhHHH---HHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccc
Q psy6858 72 GGIDPHTHFELELMG-----ATSVDDFYH---GTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHV 143 (592)
Q Consensus 72 G~ID~HtH~~~~~~~-----~~~~d~~~~---~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 143 (592)
|+..+|=|+.....+ ....+++.. ..+...+.|..||+|.....-| .-.+.+.+..+.......+.-|++.
T Consensus 7 G~tl~HEHl~~~~~~~~~~~~~~l~~~~~~~~el~~~~~~Gg~tiVd~T~~g~G-Rd~~~l~~is~~tgv~Iv~~TG~y~ 85 (292)
T PRK09875 7 GYTLAHEHLHIDLSGFKNNVDCRLDQYAFICQEMNDLMTRGVRNVIEMTNRYMG-RNAQFMLDVMRETGINVVACTGYYQ 85 (292)
T ss_pred CcceecCCeEecChhhcCCcccccccHHHHHHHHHHHHHhCCCeEEecCCCccC-cCHHHHHHHHHHhCCcEEEcCcCCC
Confidence 788899998543221 112233333 3344556899999998655555 3345555555555556666666664
Q ss_pred cc--cCCCh-HHHHHHHHHH-HH--cCCc-------EE-EEEEeeCCCcCCCHHH---HHHHHHHHHHcCCeEEEecCch
Q psy6858 144 GI--TWWSD-QVQQEMAELC-EK--HGVN-------SF-KTFMAYKGLYMLSDGE---LYDAFSAIKNLGAIAMVHAENG 206 (592)
Q Consensus 144 ~~--~~~~~-~~~~~~~~lv-~~--~Gv~-------~~-k~~~~~~~~~~~~~~~---l~~~~~~a~~~g~~~~vHae~~ 206 (592)
.. +.|.. ...+++.+++ ++ .|+. -+ ++..++ ..+++.+ |+.+.+.+++.|+++.+|...+
T Consensus 86 ~~~~p~~~~~~~~e~la~~~i~ei~~Gi~gt~ikaGvIGeiG~~~---~~it~~E~kvl~Aaa~a~~~TG~pi~~Ht~~~ 162 (292)
T PRK09875 86 DAFFPEHVATRSVQELAQEMVDEIEQGIDGTELKAGIIAEIGSSE---GKITPLEEKVFIAAALAHNQTGRPISTHTSFS 162 (292)
T ss_pred CccCCHHHhcCCHHHHHHHHHHHHHHhhccCCCcccEEEEEecCC---CCCCHHHHHHHHHHHHHHHHHCCcEEEcCCCc
Confidence 32 22211 1223333322 11 1221 12 222221 1245544 6677777888999999996543
Q ss_pred hhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCC---CEEEEecccHHHHHHHHHHHHHHHhcCCcee
Q psy6858 207 EIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDC---PLYVVHIMSKAAGDAMAYKRKELMKKGKHCT 283 (592)
Q Consensus 207 ~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~---pl~i~hv~s~~a~~~i~~ar~~~~~~G~~~~ 283 (592)
....+. +++..+.|+ ++.+.|+......+.+..+-+. |+ .
T Consensus 163 ~~g~e~-------------------------------l~il~e~Gvd~~rvvi~H~d~~~d~~~~~~l~~~----G~--~ 205 (292)
T PRK09875 163 TMGLEQ-------------------------------LALLQAHGVDLSRVTVGHCDLKDNLDNILKMIDL----GA--Y 205 (292)
T ss_pred cchHHH-------------------------------HHHHHHcCcCcceEEEeCCCCCCCHHHHHHHHHc----CC--E
Confidence 211111 334444555 5678888755445555555455 77 2
Q ss_pred eeeecccceeecCCCCCCCcccccccceecCCCCCCCCCHHHHHHHHhcC--CceEEeCCCCCCChhhhhcCCCCCCcCC
Q psy6858 284 LYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNEN--ALQTTGSDNCTFNKNQKELGKDSFTHIP 361 (592)
Q Consensus 284 v~~e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~G--~~~~~gsD~~~~~~~~~~~g~~~f~~~p 361 (592)
+..|.-... . +.++..-.+.+..+++.| ..+.+++|....+.. .+
T Consensus 206 ---------l~fD~~g~~-------~------~~pd~~r~~~i~~L~~~Gy~drilLS~D~~~~~~~-----------~~ 252 (292)
T PRK09875 206 ---------VQFDTIGKN-------S------YYPDEKRIAMLHALRDRGLLNRVMLSMDITRRSHL-----------KA 252 (292)
T ss_pred ---------EEeccCCCc-------c------cCCHHHHHHHHHHHHhcCCCCeEEEeCCCCCcccc-----------cc
Confidence 222210000 0 011112245666777776 467888887443211 12
Q ss_pred CCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHHHcC
Q psy6858 362 NGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFN 402 (592)
Q Consensus 362 ~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~lg 402 (592)
+|-.|...-+.....++.. .+++.+++=++...||+++|+
T Consensus 253 ~gg~G~~~i~~~~ip~L~~-~Gvse~~I~~m~~~NP~r~~~ 292 (292)
T PRK09875 253 NGGYGYDYLLTTFIPQLRQ-SGFSQADVDVMLRENPSQFFQ 292 (292)
T ss_pred cCCCChhHHHHHHHHHHHH-cCCCHHHHHHHHHHCHHHHhC
Confidence 2334545544444443333 368999999999999999985
No 128
>PF12890 DHOase: Dihydro-orotase-like; InterPro: IPR024403 This entry represents a small family of dihydro-orotase-like proteins from bacteria.
Probab=98.00 E-value=1.3e-05 Score=70.06 Aligned_cols=79 Identities=22% Similarity=0.338 Sum_probs=58.4
Q ss_pred eCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHH----HHHHHHcC--CCCCCCccCCCcHHHHHHHHHHHHHHh
Q psy6858 174 YKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKN----TQKLLAAG--IKGPEGHQLSRPEEVEAEAVTRACTIA 247 (592)
Q Consensus 174 ~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~----~~~~~~~G--~~~p~~~~~s~p~~~e~eav~~~i~la 247 (592)
..+.+......+++.++. .+++..+..|++++.++... .+....+| +.| ..|.+.+.|.+.|+
T Consensus 57 ddg~giq~~~lm~eamk~-a~l~~~i~ahceDd~l~~~g~v~~ge~~q~~g~~L~G----------~cEs~~~~rd~lLa 125 (142)
T PF12890_consen 57 DDGYGIQIQLLMYEAMKK-AELDQEIVAHCEDDELTNGGVVHDGELPQFLGVYLKG----------NCESVQCARDVLLA 125 (142)
T ss_pred cCCceeeeHHHHHHHHHH-HHcccHHHHhhcccccccccccccchhhHHhCCcCCC----------cchHHHHHHHHHhh
Confidence 344555566678889988 88999999999987665533 23333444 233 34678889999999
Q ss_pred cccCCCEEEEecccHH
Q psy6858 248 NQVDCPLYVVHIMSKA 263 (592)
Q Consensus 248 ~~~~~pl~i~hv~s~~ 263 (592)
+..+|..|+.|+++++
T Consensus 126 k~~g~~yhVchvstke 141 (142)
T PF12890_consen 126 KATGCHYHVCHVSTKE 141 (142)
T ss_pred hccCCcEEEEEEeccC
Confidence 9999999999998864
No 129
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=97.91 E-value=0.0016 Score=67.96 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEecCc
Q psy6858 180 LSDGELYDAFSAIKNLGAIAMVHAEN 205 (592)
Q Consensus 180 ~~~~~l~~~~~~a~~~g~~~~vHae~ 205 (592)
.+.+++..+++.|+++|+++.+|+..
T Consensus 170 ~~~~~~~~~~~~A~~~g~~v~~H~~E 195 (325)
T cd01320 170 FPPEKFVRAFQRAREAGLRLTAHAGE 195 (325)
T ss_pred CCHHHHHHHHHHHHHCCCceEEeCCC
Confidence 47889999999999999999999854
No 130
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=97.88 E-value=0.00087 Score=67.46 Aligned_cols=125 Identities=16% Similarity=0.137 Sum_probs=70.1
Q ss_pred cccCcCcccccCCCCChhhHHHHHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccccccCC-ChHH
Q psy6858 74 IDPHTHFELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVGITWW-SDQV 152 (592)
Q Consensus 74 ID~HtH~~~~~~~~~~~d~~~~~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 152 (592)
||+|+|+..... ..+.......+...|++.++...... .+.. ...++.........+.+|+|...... .+..
T Consensus 1 iD~H~Hl~~~~~----~~~~~~~~~~~~~~g~~~~i~~~~~~--~~~~-~~~~~~~~~~~~v~~~~GiHP~~~~~~~~~~ 73 (255)
T PF01026_consen 1 IDAHCHLDSPRF----EEDRPEVLERAREAGVSAIIIVSTDP--EDWE-RVLELASQYPDRVYPALGIHPWEAHEVNEED 73 (255)
T ss_dssp EEEEE-TTSGGG----TTTHHHHHHHHHHTTEEEEEEEESSH--HHHH-HHHHHHHHTTTEEEEEE---GGGGGGHSHHH
T ss_pred CcCccCCCChhh----CcCHHHHHHHHHHcCCCEEEEcCCCH--HHhH-HHHHHHhcCCCeEEEEecCCcchhhhhhHHH
Confidence 799999976322 22344456778889999886442221 1222 22222233333477888998754332 4556
Q ss_pred HHHHHHH--HHHcCCcEEE-EEEeeCCC-c---CCCHHHHHHHHHHHHHcCCeEEEecCc
Q psy6858 153 QQEMAEL--CEKHGVNSFK-TFMAYKGL-Y---MLSDGELYDAFSAIKNLGAIAMVHAEN 205 (592)
Q Consensus 153 ~~~~~~l--v~~~Gv~~~k-~~~~~~~~-~---~~~~~~l~~~~~~a~~~g~~~~vHae~ 205 (592)
.+.++++ .....+..+. +.+.+... . ....+-|.+.++.|++++.++.+|+..
T Consensus 74 ~~~l~~l~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vF~~ql~lA~~~~~pv~iH~r~ 133 (255)
T PF01026_consen 74 LEELEELINLNRPKVVAIGEIGLDYYWRNEEDKEVQEEVFERQLELAKELNLPVSIHCRK 133 (255)
T ss_dssp HHHHHHHHHHTSTTEEEEEEEEEETTTTSSSGHHHHHHHHHHHHHHHHHHTCEEEEEEES
T ss_pred HHHHHHHHHhccccceeeeeeccCcccccCCcHHHHHHHHHHHHHHHHHhCCcEEEecCC
Confidence 6777777 4333443442 34444111 1 112234888899999999999999887
No 131
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=97.61 E-value=0.00076 Score=64.28 Aligned_cols=124 Identities=19% Similarity=0.212 Sum_probs=71.5
Q ss_pred ccccCcCcccccCCCCChhhHHHHHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHH-------hccCceeeeecccc-
Q psy6858 73 GIDPHTHFELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQK-------ADEKVCCDYALHVG- 144 (592)
Q Consensus 73 ~ID~HtH~~~~~~~~~~~d~~~~~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~- 144 (592)
+||+|+|+.. ...+|+...+...+..=+|...|..-....+.+.+.+.+...+ +..+..+..|+|..
T Consensus 2 ~iD~HiH~d~-----r~~eDlekMa~sGI~~Vit~AhdP~~~~~~~v~~~h~~rl~~~E~~Ra~~~Gl~~~vavGvHPr~ 76 (254)
T COG1099 2 YIDSHIHLDV-----RGFEDLEKMALSGIREVITLAHDPYPMKTAEVYLDHFRRLLGVEPERAEKAGLKLKVAVGVHPRA 76 (254)
T ss_pred cccccccccc-----ccHHHHHHHHHhChhhhhhcccCCCCcccHHHHHHHHHHHHccchhhHHhhCceeeEEeccCCCC
Confidence 6999999854 3446665544433333344444442222333444444432222 22345677777764
Q ss_pred ccCCChHHHHHHHHHHHHcCCcEEEEEEeeCCCcCCCHHH---HHHHHHHHHHcCCeEEEecCc
Q psy6858 145 ITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGE---LYDAFSAIKNLGAIAMVHAEN 205 (592)
Q Consensus 145 ~~~~~~~~~~~~~~lv~~~Gv~~~k~~~~~~~~~~~~~~~---l~~~~~~a~~~g~~~~vHae~ 205 (592)
++.--+...++++.+....++..+. --|+...++++ |++.++.|+++++++.+|...
T Consensus 77 iP~e~~~~l~~L~~~l~~e~VvAiG----EiGLe~~t~~E~evf~~QL~LA~e~dvPviVHTPr 136 (254)
T COG1099 77 IPPELEEVLEELEELLSNEDVVAIG----EIGLEEATDEEKEVFREQLELARELDVPVIVHTPR 136 (254)
T ss_pred CCchHHHHHHHHHhhcccCCeeEee----ecccccCCHHHHHHHHHHHHHHHHcCCcEEEeCCC
Confidence 3433344556666666544554443 33555566665 888899999999999999643
No 132
>PRK09358 adenosine deaminase; Provisional
Probab=97.56 E-value=0.0081 Score=63.14 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHHHHcCCeEEEecCc
Q psy6858 179 MLSDGELYDAFSAIKNLGAIAMVHAEN 205 (592)
Q Consensus 179 ~~~~~~l~~~~~~a~~~g~~~~vHae~ 205 (592)
..+.+.+.++++.|+++|+++++|+..
T Consensus 178 ~~~~~~~~~~~~~A~~~g~~~~~H~~E 204 (340)
T PRK09358 178 GFPPSKFARAFDRARDAGLRLTAHAGE 204 (340)
T ss_pred CCCHHHHHHHHHHHHHCCCCeEEcCCC
Confidence 357788999999999999999999854
No 133
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=97.38 E-value=0.017 Score=58.08 Aligned_cols=242 Identities=17% Similarity=0.116 Sum_probs=124.8
Q ss_pred HHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccccc--cCCChH-HHHHHHHHH-HH--cCC-----
Q psy6858 97 TKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVGI--TWWSDQ-VQQEMAELC-EK--HGV----- 165 (592)
Q Consensus 97 ~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~lv-~~--~Gv----- 165 (592)
.+...+.|.-||+|+-....|-.... +.+..+....+..+.-|++... +.|... ..+++.+++ ++ +|+
T Consensus 54 ~~~~~a~Gg~TIVD~T~~~~GRdv~~-m~~vs~atglnIV~~TGfy~~~~~p~~~~~~~i~~~ae~~v~ei~~Gi~gT~i 132 (316)
T COG1735 54 LKRLMARGGQTIVDATNIGIGRDVLK-MRRVAEATGLNIVAATGFYKAAFHPEYFALRPIEELAEFVVKEIEEGIAGTGI 132 (316)
T ss_pred HHHHHHcCCCeEeeCCccccCcCHHH-HHHHHHHhCCcEEEeccccccccchhHHhhCCHHHHHHHHHHHHHhcccCCcc
Confidence 34556799999999976666644433 3333333334455554554332 222111 123333332 21 242
Q ss_pred --cEEEEEEeeCCCcCCCHHH---HHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHH
Q psy6858 166 --NSFKTFMAYKGLYMLSDGE---LYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAV 240 (592)
Q Consensus 166 --~~~k~~~~~~~~~~~~~~~---l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav 240 (592)
.-+|..-.+.+ .++.| |+.+....++.|+++++|.+.+..-.+.++-+.++|+.-
T Consensus 133 kAGiIk~~~~~~~---iTp~Eek~lrAaA~A~~~Tg~Pi~tHt~~gt~g~eq~~il~~egvdl----------------- 192 (316)
T COG1735 133 KAGIIKEAGGSPA---ITPLEEKSLRAAARAHKETGAPISTHTPAGTMGLEQLRILAEEGVDL----------------- 192 (316)
T ss_pred ccceeeeccCccc---CCHHHHHHHHHHHHHhhhcCCCeEEeccchhhhHHHHHHHHHcCCCh-----------------
Confidence 22333323333 45443 666777777889999999887664444455555555431
Q ss_pred HHHHHHhcccCCCEEEEecc-cHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCcccccccceecCCCCCC
Q psy6858 241 TRACTIANQVDCPLYVVHIM-SKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPD 319 (592)
Q Consensus 241 ~~~i~la~~~~~pl~i~hv~-s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~~~~~~~~~pplr~~ 319 (592)
..+.+.|+. +.+....++.++.+ |. ++..|.-.... +.++
T Consensus 193 -----------~~v~igH~d~n~dd~~y~~~l~~~----Ga-----------~l~fD~iG~d~-------------y~pd 233 (316)
T COG1735 193 -----------RKVSIGHMDPNTDDVYYQKKLADR----GA-----------FLEFDRIGKDK-------------YYPD 233 (316)
T ss_pred -----------hHeeEeccCCCCChHHHHHHHHhc----Cc-----------eEEecccCccc-------------cCcH
Confidence 134577877 66677777777777 77 34444432211 1222
Q ss_pred CCCHHHHHHHHhcCC--ceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhH
Q psy6858 320 ETTPTHLLTLLNENA--LQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNA 397 (592)
Q Consensus 320 ~~~~~~l~~~l~~G~--~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~ 397 (592)
..-...+..+++.|. .+.++-|.|.........+. ..-+|-.|...-+....-++ ...+++.+.+=.+.--||
T Consensus 234 ~~r~~~~~~l~~~gy~d~i~ls~d~~~~~~~~~~~~~----~~~~~~~g~~~I~~~fIP~L-k~~Gvde~~i~~mlvdNP 308 (316)
T COG1735 234 EDRIAPLLELVARGYADLILLSHDDICLSDDVFLKSM----LKANGGWGYGYILNDFIPRL-KRHGVDEETIDTMLVDNP 308 (316)
T ss_pred HHhhhhHHHHHHhhHhhheecccchhhhhhhHHHHhh----hhhcCCcccchhhHhhHHHH-HHcCCCHHHHHHHHhhCH
Confidence 223455667777776 34445355544443322110 00011122111111111111 335678777888888899
Q ss_pred HHHcCC
Q psy6858 398 AKIFNL 403 (592)
Q Consensus 398 Ak~lgl 403 (592)
|++|..
T Consensus 309 ~r~f~~ 314 (316)
T COG1735 309 ARLFTA 314 (316)
T ss_pred HHHhcc
Confidence 999976
No 134
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=97.20 E-value=0.0059 Score=62.93 Aligned_cols=266 Identities=19% Similarity=0.167 Sum_probs=131.2
Q ss_pred CccccCcCcccccCC-----CCChh----hHH---HHHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeee
Q psy6858 72 GGIDPHTHFELELMG-----ATSVD----DFY---HGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDY 139 (592)
Q Consensus 72 G~ID~HtH~~~~~~~-----~~~~d----~~~---~~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 139 (592)
|+..+|=|+...+.. ....+ ++. ...+.+.+.|..||+|+....-| .-...+.+..+.......+.-
T Consensus 7 G~tl~HEHl~~d~~~~~~~~~~~~~~~~~~~~~~~~El~~~k~~Gg~tiVd~T~~g~G-Rd~~~l~~is~~tGv~II~~T 85 (308)
T PF02126_consen 7 GFTLMHEHLLIDLSGFYKDPDEALDDRDEDVEAAVAELKEFKAAGGRTIVDATPIGLG-RDVEALREISRRTGVNIIAST 85 (308)
T ss_dssp SSEEEEEESEEETTTHHHHTGGGGCGHHHHHHHHHHHHHHHHHTTEEEEEE--SGGGT-B-HHHHHHHHHHHT-EEEEEE
T ss_pred CCeecccCeeecChhhccCCCcchhhhhhhHHHHHHHHHHHHHcCCCEEEecCCcccC-cCHHHHHHHHHHhCCeEEEeC
Confidence 678889998543321 01111 222 23344557899999998655555 334666777666666677777
Q ss_pred eccccc--cCCC-hHHHHHHHHHH-HH--cCCc-------EEEEEEeeCCCcCCCHHH---HHHHHHHHHHcCCeEEEec
Q psy6858 140 ALHVGI--TWWS-DQVQQEMAELC-EK--HGVN-------SFKTFMAYKGLYMLSDGE---LYDAFSAIKNLGAIAMVHA 203 (592)
Q Consensus 140 ~~~~~~--~~~~-~~~~~~~~~lv-~~--~Gv~-------~~k~~~~~~~~~~~~~~~---l~~~~~~a~~~g~~~~vHa 203 (592)
|++... +.|. ....+++.+++ ++ .|+. -+|...++ ..+++.| |+++....++.|+++++|.
T Consensus 86 G~y~~~~~p~~~~~~s~e~la~~~i~Ei~~GidgT~ikaG~Ik~~~~~---~~it~~E~k~lrAaa~A~~~TG~pI~~H~ 162 (308)
T PF02126_consen 86 GFYKEPFYPEWVREASVEELADLFIREIEEGIDGTGIKAGIIKEIGSS---NPITPLEEKVLRAAARAHKETGAPISTHT 162 (308)
T ss_dssp EE-SGGCSCHHHHTSHHHHHHHHHHHHHHT-STTSSB-ESEEEEEEBT---TBCEHHHHHHHHHHHHHHHHHT-EEEEEE
T ss_pred CCCccccCChhhhcCCHHHHHHHHHHHHHhcCCCCccchhheeEeecc---CCCCHHHHHHHHHHHHHHHHhCCeEEEcC
Confidence 776642 2221 11233444433 22 3443 34444333 2345544 6666677778899999998
Q ss_pred Cchh-hhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCEEEEecccHHHHHHHHHHHHHHHhcCCce
Q psy6858 204 ENGE-IIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHC 282 (592)
Q Consensus 204 e~~~-~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~i~hv~s~~a~~~i~~ar~~~~~~G~~~ 282 (592)
+.+. ...+..+.+.+.|+.- -++.+.|+......+.+..+-++ |+
T Consensus 163 ~~g~~~~~e~~~il~e~Gv~~----------------------------~rvvigH~D~~~D~~y~~~la~~----G~-- 208 (308)
T PF02126_consen 163 GRGTRMGLEQLDILEEEGVDP----------------------------SRVVIGHMDRNPDLDYHRELADR----GV-- 208 (308)
T ss_dssp STTGTCHHHHHHHHHHTT--G----------------------------GGEEETSGGGST-HHHHHHHHHT----T---
T ss_pred CCCCcCHHHHHHHHHHcCCCh----------------------------hHeEEeCCCCCCCHHHHHHHHhc----CC--
Confidence 7654 3333344444444321 13556777755555555555455 77
Q ss_pred eeeeecccceeecCCCCCCCcccccccceecCC--CCCCCCCHHHHHHHHhcCC--ceEEeCCCCCCChhhhhcCCCCCC
Q psy6858 283 TLYGETLAAAVGTHANQIPCTWHDQAAHVLSPP--LRPDETTPTHLLTLLNENA--LQTTGSDNCTFNKNQKELGKDSFT 358 (592)
Q Consensus 283 ~v~~e~~~~~l~~d~~~~~~~~~~~~~~~~~pp--lr~~~~~~~~l~~~l~~G~--~~~~gsD~~~~~~~~~~~g~~~f~ 358 (592)
++.+|.-..... .+..+|. +.++....+.|..+++.|- .++++.|-+....
T Consensus 209 ---------~l~~D~~g~~~~-----g~~~~~~~~~~~d~~ri~~l~~L~~~Gy~~qIlLS~D~~~k~~----------- 263 (308)
T PF02126_consen 209 ---------YLEFDTIGREFS-----GKDKNPRVGYPPDEERIELLKELIEEGYADQILLSHDIGRKSR----------- 263 (308)
T ss_dssp ---------EEEETTTT-B-T-----TTTTCHSCTTS-HHHHHHHHHHHHHTTTGGGEEE-HHHESEEG-----------
T ss_pred ---------EEEecCCccccc-----CcccCccCCCCCHHHHHHHHHHHHHcCCcCcEEEecccccccc-----------
Confidence 233443311000 0000010 1111223467788888876 4788888654211
Q ss_pred cCCCCCcchh--hHHHHHHHhhccCCCCCHHHHHHHHhHhHHHHc
Q psy6858 359 HIPNGVNGVQ--DRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIF 401 (592)
Q Consensus 359 ~~p~G~~g~e--~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~l 401 (592)
..+.|..|.. .-+..+.-.+ ...+++.+++=++...||+++|
T Consensus 264 ~~~~gg~g~~~~~i~~~fiP~L-~~~Gv~~~~i~~ilv~NP~r~l 307 (308)
T PF02126_consen 264 LYRYGGGGYGYIYILTRFIPRL-KERGVSEEDIDKILVENPARIL 307 (308)
T ss_dssp SSSCCHHHHTTTHHHHTHHHHH-HHTTS-HHHHHHHHTHHHHHHH
T ss_pred ccccCCCCccHHHHHHHHHHHH-HHcCCCHHHHHHHHHHCHHHHc
Confidence 1112222211 1111111112 2246899999999999999997
No 135
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=97.06 E-value=0.0097 Score=59.81 Aligned_cols=185 Identities=16% Similarity=0.093 Sum_probs=102.0
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEEEeeCCCcCCCHHHHH-HHHHHHHHcCCeEEEecC-chhhhHHHHHHHHHcCCCCCC
Q psy6858 148 WSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELY-DAFSAIKNLGAIAMVHAE-NGEIIDKNTQKLLAAGIKGPE 225 (592)
Q Consensus 148 ~~~~~~~~~~~lv~~~Gv~~~k~~~~~~~~~~~~~~~l~-~~~~~a~~~g~~~~vHae-~~~~i~~~~~~~~~~G~~~p~ 225 (592)
..++..+++++.+.+.|+.+++++....+.. ..+..+. .+++.|.++|+++.+|+. ....-. .
T Consensus 82 ~~~~~~~~l~~~~~~~g~~Gv~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~pv~~H~g~~~~~~~-~------------- 146 (273)
T PF04909_consen 82 DPEDAVEELERALQELGFRGVKLHPDLGGFD-PDDPRLDDPIFEAAEELGLPVLIHTGMTGFPDA-P------------- 146 (273)
T ss_dssp SHHHHHHHHHHHHHTTTESEEEEESSETTCC-TTSGHCHHHHHHHHHHHT-EEEEEESHTHHHHH-H-------------
T ss_pred CchhHHHHHHHhccccceeeeEecCCCCccc-cccHHHHHHHHHHHHhhccceeeeccccchhhh-h-------------
Confidence 3556788899988888999999877554444 4444554 999999999999999965 110000 0
Q ss_pred CccCCCcHHHHHHHHHHHHHHhc-ccCCCEEEEecccH--HHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCC
Q psy6858 226 GHQLSRPEEVEAEAVTRACTIAN-QVDCPLYVVHIMSK--AAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPC 302 (592)
Q Consensus 226 ~~~~s~p~~~e~eav~~~i~la~-~~~~pl~i~hv~s~--~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~ 302 (592)
...........++. ..++++.+.|+... .-.+.+..+++. - +|+.++...... +
T Consensus 147 ---------~~~~~~~~~~~~~~~~P~l~ii~~H~G~~~~~~~~~~~l~~~~-----~--nvy~d~s~~~~~------~- 203 (273)
T PF04909_consen 147 ---------SDPADPEELEELLERFPDLRIILAHLGGPFPWWEEALRLLDRF-----P--NVYVDLSGIPPF------W- 203 (273)
T ss_dssp ---------HHHHHHHHHTTHHHHSTTSEEEESGGGTTHHHHHHHHHHHHHH-----T--TEEEECHSHHSS------E-
T ss_pred ---------HHHHHHHHHHHHHHHhcCCeEEEecCcccchhHHHHHHHHHhC-----C--cccccccccccc------c-
Confidence 00111111222333 34799999999987 444455554443 2 566655432110 0
Q ss_pred cccccccceecCCCCCCCCCHHHHHHHHhc-C-CceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhcc
Q psy6858 303 TWHDQAAHVLSPPLRPDETTPTHLLTLLNE-N-ALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVV 380 (592)
Q Consensus 303 ~~~~~~~~~~~pplr~~~~~~~~l~~~l~~-G-~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~ 380 (592)
+.. +. ......+..++.. | ..+..|||..-....... +... .+...
T Consensus 204 -------~~~-~~----~~~~~~l~~~~~~~g~drilfGSD~P~~~~~~~~----------------~~~~--~~~~~-- 251 (273)
T PF04909_consen 204 -------YFW-PP----SFDRPFLRRAVDEFGPDRILFGSDYPHPDGASPY----------------EYIW--EAYFL-- 251 (273)
T ss_dssp -------EEE-TT----HHCHHHHHHHHHHHTGGGEEEE--TTSSTHHHHH----------------HHHH--HHHHH--
T ss_pred -------ccC-cc----cccHHHHHHHHHHhCCceEEecCCCCCCCccccH----------------HHHH--Hhhhc--
Confidence 000 00 1122334444433 3 478999997544332110 1101 11100
Q ss_pred CCCCCHHHHHHHHhHhHHHHcCC
Q psy6858 381 PGILSPEKFVAVTSTNAAKIFNL 403 (592)
Q Consensus 381 ~~~l~~~e~v~~~T~n~Ak~lgl 403 (592)
..++.++.=++...||+++|+|
T Consensus 252 -~~l~~~~~~~i~~~NA~rl~~l 273 (273)
T PF04909_consen 252 -DDLSEEEREKILYDNARRLYGL 273 (273)
T ss_dssp -HHSSHHHHHHHHTHHHHHHHTC
T ss_pred -cCCCHHHHHHHHhHhHHHHcCc
Confidence 1179999999999999999986
No 136
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=96.92 E-value=0.26 Score=50.67 Aligned_cols=176 Identities=22% Similarity=0.245 Sum_probs=106.2
Q ss_pred hHHHHHHHHHHHHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccC
Q psy6858 150 DQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQL 229 (592)
Q Consensus 150 ~~~~~~~~~lv~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~ 229 (592)
+...+++++.+.+.|+..+++.....+.+ .++..++.+++.|.++|+++.+|.-.+.... +.+.. .
T Consensus 112 ~~a~~E~er~v~~~gf~g~~l~p~~~~~~-~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~~------------~~~~~-~ 177 (293)
T COG2159 112 EAAAEELERRVRELGFVGVKLHPVAQGFY-PDDPRLYPIYEAAEELGVPVVIHTGAGPGGA------------GLEKG-H 177 (293)
T ss_pred HHHHHHHHHHHHhcCceEEEecccccCCC-CCChHHHHHHHHHHHcCCCEEEEeCCCCCCc------------ccccC-C
Confidence 55778999999988999988765544433 4666699999999999999999976532110 00000 2
Q ss_pred CCcHHHHHHHHHHHHHHhccc-CCCEEEEecc--cHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCCCcccc
Q psy6858 230 SRPEEVEAEAVTRACTIANQV-DCPLYVVHIM--SKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHD 306 (592)
Q Consensus 230 s~p~~~e~eav~~~i~la~~~-~~pl~i~hv~--s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~~~~~~ 306 (592)
+.|-.++. ++.+. +.++.+.|+. -.--.+.+..++. .. +|+.++...
T Consensus 178 ~~p~~~~~--------va~~fP~l~IVl~H~G~~~p~~~~a~~~a~~-----~~--nvy~d~s~~--------------- 227 (293)
T COG2159 178 SDPLYLDD--------VARKFPELKIVLGHMGEDYPWELEAIELAYA-----HP--NVYLDTSGV--------------- 227 (293)
T ss_pred CCchHHHH--------HHHHCCCCcEEEEecCCCCchhHHHHHHHHh-----CC--Cceeeeecc---------------
Confidence 45544432 34444 8999999997 3333333444432 33 555554311
Q ss_pred cccceecCCCCCCCCCHHHHHHHHhc--CCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCC
Q psy6858 307 QAAHVLSPPLRPDETTPTHLLTLLNE--NALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGIL 384 (592)
Q Consensus 307 ~~~~~~~pplr~~~~~~~~l~~~l~~--G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l 384 (592)
+|... ...+++.+.. ...+.+|||......... + ..+....+
T Consensus 228 -------~~~~~----~~~~~~~~~~~~~dkilFGSD~P~~~~~~~-l------------------------~~~~~l~l 271 (293)
T COG2159 228 -------RPKYF----APPLLEFLKELGPDKILFGSDYPAIHPEVW-L------------------------AELDELGL 271 (293)
T ss_pred -------ccccC----ChHHHHHHHhcccCeEEecCCCCCcCHHHH-H------------------------HHHHhcCC
Confidence 11110 1133344433 347999999544432211 1 12234567
Q ss_pred CHHHHHHHHhHhHHHHcCCCC
Q psy6858 385 SPEKFVAVTSTNAAKIFNLYP 405 (592)
Q Consensus 385 ~~~e~v~~~T~n~Ak~lgl~~ 405 (592)
+.+.--++.-.|++|+|++.+
T Consensus 272 ~~e~k~kiL~~NA~rll~l~~ 292 (293)
T COG2159 272 SEEVKEKILGENAARLLGLDP 292 (293)
T ss_pred CHHHHHHHHHHhHHHHhCcCC
Confidence 778888999999999999954
No 137
>PF00449 Urease_alpha: Urease alpha-subunit, N-terminal domain; InterPro: IPR011612 Urease (urea amidohydrolase, 3.5.1.5 from EC) catalyses the hydrolysis of urea to form ammonia and carbamate. The subunit composition of urease from different sources varies [], but each holoenzyme consists of four structural domains []: three structural domains and a nickel-binding catalytic domain common to amidohydrolases []. Urease is unique among nickel metalloenzymes in that it catalyses a hydrolysis rather than a redox reaction. In Helicobacter pylori, the gamma and beta domains are fused and called the alpha subunit (IPR008223 from INTERPRO). The catalytic subunit (called beta or B) has the same organisation as the Klebsiella alpha subunit. Jack bean (Canavalia ensiformis) urease has a fused gamma-beta-alpha organisation (IPR008221 from INTERPRO). The N-terminal domain is a composite domain and plays a major trimer stabilising role by contacting the catalytic domain of the symmetry related alpha-subunit []. ; GO: 0009039 urease activity, 0016151 nickel ion binding, 0019627 urea metabolic process; PDB: 3LA4_A 2UBP_C 3UBP_C 1UBP_C 1S3T_C 1IE7_C 4UBP_C 1E9Y_B 1E9Z_B 3QGA_O ....
Probab=96.28 E-value=0.0061 Score=51.92 Aligned_cols=35 Identities=29% Similarity=0.439 Sum_probs=31.2
Q ss_pred cccEEEEccEEEcCCCceeeEEEEECCEEEEeecC
Q psy6858 18 QNRLLIKNGKVVNADKISDLDIYIENGVIQQLGRN 52 (592)
Q Consensus 18 ~~~llIkng~Iv~~d~~~~~dV~I~dG~I~~Ig~~ 52 (592)
..+++|.|+.|+|...++++||.|+||+|+.||+.
T Consensus 65 ~lD~VItNa~IiD~~GI~KADIGIkdG~I~gIGkA 99 (121)
T PF00449_consen 65 ALDLVITNALIIDYTGIVKADIGIKDGRIVGIGKA 99 (121)
T ss_dssp C-SEEEEEEEEEETTEEEEEEEEEETTEEEEEE-E
T ss_pred cccEEEeCcEEEecCCcEEeeEEeeCCEEEEEecc
Confidence 46899999999999999999999999999999974
No 138
>PF07908 D-aminoacyl_C: D-aminoacylase, C-terminal region; InterPro: IPR012855 D-aminoacylase (Q9AGH8 from SWISSPROT, 3.5.1.81 from EC) hydrolyses a wide variety of N-acyl derivatives of neutral D-amino acids, in a zinc-dependent manner. The enzyme is composed of a small beta-barrel domain and a larger catalytic alpha/beta-barrel that contains a short alpha/beta insert. The overall structure shares significant similarity to the alpha/beta-barrel amidohydrolase superfamily, in which the beta-strands in both barrels superimpose well []. The C-terminal region featured in this entry forms part of the beta-barrel domain, together with a short N-terminal segment. This domain does not seem to contribute to the substrate-binding site or to be involved in the catalytic process.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; PDB: 3GIQ_B 3GIP_B 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A.
Probab=96.21 E-value=0.0044 Score=45.08 Aligned_cols=29 Identities=31% Similarity=0.583 Sum_probs=18.4
Q ss_pred eeEEEECCEEEEECCeeeecCCCceeecCC
Q psy6858 452 PEYVIVGGRVCVDEGNLRVAQGQGNYLPTH 481 (592)
Q Consensus 452 ~~~Viv~GkvV~~~g~l~~~~g~g~~~~~~ 481 (592)
+.+||+||++|+++|+++.. -.|++|+++
T Consensus 20 I~~V~VNG~~vv~~g~~t~~-~~G~~lrr~ 48 (48)
T PF07908_consen 20 IDYVFVNGQIVVEDGEVTGA-RPGRVLRRP 48 (48)
T ss_dssp EEEEEETTEEEECTTEESSS-----B----
T ss_pred EEEEEECCEEEEECCeECCC-CCCeEecCC
Confidence 48999999999999997654 499999863
No 139
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=96.12 E-value=0.5 Score=47.63 Aligned_cols=50 Identities=20% Similarity=0.272 Sum_probs=38.2
Q ss_pred HHHHHHHHHHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCc
Q psy6858 153 QQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAEN 205 (592)
Q Consensus 153 ~~~~~~lv~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~ 205 (592)
.++++++ .+.|+.++|......+. .+++.+.++++.+.++|+.+.+|+..
T Consensus 83 ~~~l~~~-~~~g~rGvRl~~~~~~~--~~~~~~~~~~~~~~~~gl~v~~~~~~ 132 (263)
T cd01311 83 DAELKEM-HDAGVRGVRFNFLFGGV--DNKDELDEIAKRAAELGWHVQVYFDA 132 (263)
T ss_pred HHHHHHH-HHCCCeEEEEecccCCC--CCHHHHHHHHHHHHHcCCEEEEEeCH
Confidence 4677777 55799999875443333 27778899999999999999999754
No 140
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=96.08 E-value=0.76 Score=48.35 Aligned_cols=25 Identities=8% Similarity=-0.075 Sum_probs=21.8
Q ss_pred CHHHHHHHHHHHHHcC--CeEEEecCc
Q psy6858 181 SDGELYDAFSAIKNLG--AIAMVHAEN 205 (592)
Q Consensus 181 ~~~~l~~~~~~a~~~g--~~~~vHae~ 205 (592)
....+..+|+.|++.| +.+++|+-.
T Consensus 177 ~~~~f~~~f~~ar~~g~~l~~t~HAGE 203 (345)
T cd01321 177 PLLDFLPQLLWFPKQCAEIPFFFHAGE 203 (345)
T ss_pred CHHHHHHHHHHHHHhCCCCceEeecCC
Confidence 4678889999999999 999999854
No 141
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=96.04 E-value=0.26 Score=48.71 Aligned_cols=71 Identities=11% Similarity=0.125 Sum_probs=45.6
Q ss_pred CCHHHHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHHH
Q psy6858 321 TTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKI 400 (592)
Q Consensus 321 ~~~~~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~ 400 (592)
.....+.+.+..|....+-||.---... |+-+-| ...++.-...+++.+.++.+.+-++--.|++++
T Consensus 213 asr~~v~~a~~~g~~FmmETDyIDDp~R------------pgavL~-PktVPrr~~~i~~~g~~~ee~vy~i~~E~pe~V 279 (285)
T COG1831 213 ASRKNVEDAAELGPRFMMETDYIDDPRR------------PGAVLG-PKTVPRRTREILEKGDLTEEDVYRIHVENPERV 279 (285)
T ss_pred ccHHHHHHHHhcCCceEeecccccCccc------------CCCcCC-ccchhHHHHHHHHhcCCcHHHHHHHHHhCHHHH
Confidence 3445677889999999999997421111 111111 111222223344678889999999999999999
Q ss_pred cCCC
Q psy6858 401 FNLY 404 (592)
Q Consensus 401 lgl~ 404 (592)
+|++
T Consensus 280 Yg~~ 283 (285)
T COG1831 280 YGIE 283 (285)
T ss_pred hCcc
Confidence 9985
No 142
>PTZ00124 adenosine deaminase; Provisional
Probab=94.50 E-value=3.4 Score=43.78 Aligned_cols=53 Identities=11% Similarity=0.062 Sum_probs=35.7
Q ss_pred HHHHHHhcCCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHH
Q psy6858 325 HLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAK 399 (592)
Q Consensus 325 ~l~~~l~~G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak 399 (592)
.+..+++.|++++++||...+... .+..-|..+....+++..++.+++ .|+.+
T Consensus 293 Pi~~l~~~Gv~v~InTDDp~~~~t---------------------~l~~Ey~~~~~~~gls~~~l~~l~-~nai~ 345 (362)
T PTZ00124 293 PIRKLYDAGVKVSVNSDDPGMFLT---------------------NINDDYEELYTHLNFTLADFMKMN-EWALE 345 (362)
T ss_pred HHHHHHHCCCcEEEeCCCccccCC---------------------ChhHHHHHHHHHcCCCHHHHHHHH-HHHHH
Confidence 355799999999999999775422 122223334456789999988885 45544
No 143
>cd00443 ADA_AMPD Adenosine/AMP deaminase. Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway.
Probab=93.41 E-value=3.6 Score=42.48 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHHHcC-CeEEEecCc
Q psy6858 181 SDGELYDAFSAIKNLG-AIAMVHAEN 205 (592)
Q Consensus 181 ~~~~l~~~~~~a~~~g-~~~~vHae~ 205 (592)
....+..+++.|++.| +.+.+|+..
T Consensus 151 ~~~~f~~~~~~ar~~g~l~~t~HaGE 176 (305)
T cd00443 151 PLRDFYSYYEYARRLGLLGLTLHCGE 176 (305)
T ss_pred CHHHHHHHHHHHHHcCCcceEEeecC
Confidence 4678999999999999 999999854
No 144
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=92.93 E-value=0.84 Score=43.75 Aligned_cols=40 Identities=28% Similarity=0.370 Sum_probs=29.0
Q ss_pred ccccCcCccccc-CCCCChhhHHHHHHHHHcCCeeEEeccc
Q psy6858 73 GIDPHTHFELEL-MGATSVDDFYHGTKAAVAGGTTTIIDFA 112 (592)
Q Consensus 73 ~ID~HtH~~~~~-~~~~~~d~~~~~~~~ala~GtTti~d~~ 112 (592)
+||+|+|+-... .|..+.++-....+.|.+.|+|+++...
T Consensus 1 MIDIH~HIlp~iDDGp~s~eesl~ml~~A~~qGvt~iVaTs 41 (254)
T COG4464 1 MIDIHSHILPDIDDGPKSLEESLAMLREAVRQGVTKIVATS 41 (254)
T ss_pred CccccccccCCCCCCCCcHHHHHHHHHHHHHcCceEEeecc
Confidence 589999994322 2345556666778889999999998653
No 145
>PF00962 A_deaminase: Adenosine/AMP deaminase immunodeficiency disease (SCID); InterPro: IPR001365 Adenosine deaminase (3.5.4.4 from EC) catalyzes the hydrolytic deamination of adenosine into inosine and AMP deaminase (3.5.4.6 from EC) catalyzes the hydrolytic deamination of AMP into IMP. It has been shown [] that these two enzymes share three regions of sequence similarities; these regions are centred on residues which are proposed to play an important role in the catalytic mechanism of these two enzymes.; GO: 0019239 deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process; PDB: 3LGG_B 3LGD_B 2AMX_B 3EWD_A 2QVN_A 2PGF_A 2PGR_A 3EWC_A 1W1I_G 1O5R_A ....
Probab=91.90 E-value=0.72 Score=48.12 Aligned_cols=54 Identities=26% Similarity=0.221 Sum_probs=33.0
Q ss_pred ChHHHHHHHHHHHHc---CCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCc
Q psy6858 149 SDQVQQEMAELCEKH---GVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAEN 205 (592)
Q Consensus 149 ~~~~~~~~~~lv~~~---Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~ 205 (592)
.++..+++.++.... ++-+|...-.. ..-....+..+++.+++.|+.+++||.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~vvG~dl~g~E---~~~~~~~~~~~~~~a~~~gl~~t~HaGE 202 (331)
T PF00962_consen 146 PDEWAEEIVELASKYPDKGVVGFDLAGDE---DGGPPLKFAPAFRKAREAGLKLTVHAGE 202 (331)
T ss_dssp THHHHHHHHHHHHHTTTTTEEEEEEESST---TSTTGGGHHHHHHHHHHTT-EEEEEESS
T ss_pred hHHHHHHHHHHHhhcccceEEEEEecCCc---ccCchHHHHHHHhhhcccceeecceecc
Confidence 566666666665442 34444332211 1223344889999999999999999854
No 146
>COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=89.32 E-value=26 Score=35.39 Aligned_cols=23 Identities=9% Similarity=0.075 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHcCCeEEEecCc
Q psy6858 183 GELYDAFSAIKNLGAIAMVHAEN 205 (592)
Q Consensus 183 ~~l~~~~~~a~~~g~~~~vHae~ 205 (592)
+.+++.++.++++|+.+.++.-.
T Consensus 124 ~~~r~~~~rL~~~gl~fdl~~~~ 146 (279)
T COG3618 124 PAWRANVERLAKLGLHFDLQVDP 146 (279)
T ss_pred HHHHHHHHHHHhcCCeEEEEeCh
Confidence 67889999999999887777543
No 147
>PRK08609 hypothetical protein; Provisional
Probab=88.71 E-value=9.6 Score=43.02 Aligned_cols=32 Identities=28% Similarity=0.216 Sum_probs=22.9
Q ss_pred cccCcCcccccCCCCChhhHHHHHHHHHcCCeeEEe
Q psy6858 74 IDPHTHFELELMGATSVDDFYHGTKAAVAGGTTTII 109 (592)
Q Consensus 74 ID~HtH~~~~~~~~~~~d~~~~~~~~ala~GtTti~ 109 (592)
+|.|+|...+ .+..+ +...++.|.+.|++.+.
T Consensus 336 ~DlH~HT~~s-Dg~~s---leemv~~A~~~Gl~~i~ 367 (570)
T PRK08609 336 GDLHMHTTWS-DGAFS---IEEMVEACIAKGYEYMA 367 (570)
T ss_pred CCccccCCCC-CCCCC---HHHHHHHHHHCCCCEEE
Confidence 4999998754 23333 44468889999999884
No 148
>PF07969 Amidohydro_3: Amidohydrolase family; InterPro: IPR013108 Amidohydrolases are a diverse superfamily of enzymes which catalyse the hydrolysis of amide or amine bonds in a large number of different substrates including urea, cytosine, AMP, formylmethanofuran, etc [, ]. Also included in this superfamily are the phopshotriesterase enzymes, which hydrolyse P-O bonds. Members participate in a large number of processes including nucleotide metabolism, detoxification and neuronal development. They use a variety of divalent metal cofactors for catalysis: for example adenosine deaminase binds a single zinc ion, phopsphotriesterase binds two, while urease binds nickel. It has been postulated that since some of these proteins, such as those some of those involved in neuronal devlopment, appear to have lost their metal-binding centres, their function may simply be to bind, but not hydrolyse, their target molecules. This entry represents a subset of amidohydrolase domains that participate in different functions including cytosine degradation, atrazine degradation and other metabolic processes. The structure of the domain from Escherichia coli has been studied, and like other amidohydrolases it forms a classical alpha-beta TIM-barrel fold []. The active site is located in the mouth of the enzyme barrel and contains a bound iron ion that coordinates a hydroxyl nucleophile. Substrate binding involves a significant conformational change that sequesters the reaction complex from solvent.; PDB: 4F0R_A 4F0S_A 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A ....
Probab=85.39 E-value=0.26 Score=52.78 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=17.2
Q ss_pred HHHHHHHhcccCCCEEEEecccHHHHHH
Q psy6858 240 VTRACTIANQVDCPLYVVHIMSKAAGDA 267 (592)
Q Consensus 240 v~~~i~la~~~~~pl~i~hv~s~~a~~~ 267 (592)
+.+.+..+.+.|.++.+ |+....+.+.
T Consensus 227 l~~~v~~a~~~g~~v~v-Ha~gd~a~~~ 253 (404)
T PF07969_consen 227 LEELVRAAREAGLQVAV-HAIGDRAIDE 253 (404)
T ss_dssp HHHHHHHHHHCT-EEEE-EEESHHHHHH
T ss_pred HHHHHHHHHhcCCeeEE-EEcCCchHHh
Confidence 56778888888998888 4444444443
No 149
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=84.26 E-value=63 Score=34.82 Aligned_cols=118 Identities=18% Similarity=0.138 Sum_probs=76.3
Q ss_pred cHHHHHHHHHHHhccCceeeeeccccccCCChHHHHHHHHHHHHcCCcEEEEEEeeCCCc---CCCHHHHHHHHHHHHHc
Q psy6858 119 SLIKTYESWRQKADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLY---MLSDGELYDAFSAIKNL 195 (592)
Q Consensus 119 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~Gv~~~k~~~~~~~~~---~~~~~~l~~~~~~a~~~ 195 (592)
.....+.....+.. +....+|.|+.+.. .+...+++.. +.|.+.|.+|......+ .+++++..++.+.++++
T Consensus 114 ~~~~~~~~~~~~~~-~~~~~iGaHvSiaG---G~~~a~~~a~-~~g~~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~ 188 (413)
T PTZ00372 114 DVDNAFNKIAELAE-KSNVYIGAHVSASG---GVDNSPINAY-NIAGQAFALFLKNQRTWNSPPLSDETIDKFKENCKKY 188 (413)
T ss_pred hhHHHHHHHHHHhh-ccCceEEEEEeccc---cHHHHHHHHH-HcCCCEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHc
Confidence 34445555554443 34557788877653 2333344433 45999999998754333 47788899999999999
Q ss_pred CCe---EEEecCchhhhHHHHHHHHHcCCCCCCCccCCC--cH--HHHHHHHHHHHHHhcccCCCEEEEeccc
Q psy6858 196 GAI---AMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSR--PE--EVEAEAVTRACTIANQVDCPLYVVHIMS 261 (592)
Q Consensus 196 g~~---~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~--p~--~~e~eav~~~i~la~~~~~pl~i~hv~s 261 (592)
|+. +.+|+...- -++. ++ +...+.+.+.+..|.+.|++..++|..+
T Consensus 189 gi~~~~i~~HapYlI--------------------NLASpd~e~rekSv~~~~~eL~rA~~LGa~~VV~HPGs 241 (413)
T PTZ00372 189 NYDPKFILPHGSYLI--------------------NLANPDKEKREKSYDAFLDDLQRCEQLGIKLYNFHPGS 241 (413)
T ss_pred CCCcceEEeecCcee--------------------cCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCc
Confidence 763 788975410 0011 11 1224667788999999999999999886
No 150
>KOG1097|consensus
Probab=82.94 E-value=33 Score=36.42 Aligned_cols=38 Identities=11% Similarity=0.014 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHH
Q psy6858 181 SDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLA 218 (592)
Q Consensus 181 ~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~ 218 (592)
....+..++..+.+.|+...+||.....-....+.+++
T Consensus 225 p~~~f~~vl~~~~~~gi~~t~HaGE~~~~~~~v~~~LD 262 (399)
T KOG1097|consen 225 PLSLFLEVLAKAPAKGIHLTFHAGETNGGASVVKNALD 262 (399)
T ss_pred ChhhhHHHHHhhhhcCCcEEEEccccCCChHHHHHHHH
Confidence 44567788888888999999998543222344455555
No 151
>PRK08392 hypothetical protein; Provisional
Probab=82.55 E-value=40 Score=32.71 Aligned_cols=35 Identities=29% Similarity=0.287 Sum_probs=24.2
Q ss_pred cccCcCcccccCCCCChhhHHHHHHHHHcCCeeEE--eccc
Q psy6858 74 IDPHTHFELELMGATSVDDFYHGTKAAVAGGTTTI--IDFA 112 (592)
Q Consensus 74 ID~HtH~~~~~~~~~~~d~~~~~~~~ala~GtTti--~d~~ 112 (592)
||.|+|-..+ .+..+.+ ...+.|.+.|++.+ .||.
T Consensus 1 ~D~H~HT~~s-d~~~~~~---e~v~~A~~~Gl~~i~iTdH~ 37 (215)
T PRK08392 1 MDLHTHTVYS-DGIGSVR---DNIAEAERKGLRLVGISDHI 37 (215)
T ss_pred CccccCCCCc-CCcCCHH---HHHHHHHHcCCCEEEEccCC
Confidence 7999998665 2434444 44788889999987 4554
No 152
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=82.18 E-value=39 Score=33.90 Aligned_cols=87 Identities=18% Similarity=0.146 Sum_probs=58.3
Q ss_pred HHHHHHHHcCCcEEEEEEeeCCCc---CCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCC
Q psy6858 155 EMAELCEKHGVNSFKTFMAYKGLY---MLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSR 231 (592)
Q Consensus 155 ~~~~lv~~~Gv~~~k~~~~~~~~~---~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~ 231 (592)
.++.+ .+.|...+.+++.....+ ..+++.+.++.+.++++|+.+++|+.... .+.. ..
T Consensus 15 ~~~~~-~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~ls~h~p~~~------------nl~s------~d 75 (273)
T smart00518 15 AFIEA-VDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKENNIDVSVHAPYLI------------NLAS------PD 75 (273)
T ss_pred HHHHH-HHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCcee------------cCCC------CC
Confidence 33433 346999998887644332 36788899999999999999999964210 0000 01
Q ss_pred cHH--HHHHHHHHHHHHhcccCCCEEEEecc
Q psy6858 232 PEE--VEAEAVTRACTIANQVDCPLYVVHIM 260 (592)
Q Consensus 232 p~~--~e~eav~~~i~la~~~~~pl~i~hv~ 260 (592)
++. ...+.+.+++.+|+..|++..++|..
T Consensus 76 ~~~r~~~~~~l~~~i~~A~~lGa~~vv~h~g 106 (273)
T smart00518 76 KEKVEKSIERLIDEIKRCEELGIKALVFHPG 106 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEccc
Confidence 111 22356788999999999998888875
No 153
>COG1816 Add Adenosine deaminase [Nucleotide transport and metabolism]
Probab=80.61 E-value=24 Score=36.96 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEecCc
Q psy6858 180 LSDGELYDAFSAIKNLGAIAMVHAEN 205 (592)
Q Consensus 180 ~~~~~l~~~~~~a~~~g~~~~vHae~ 205 (592)
-..+.+.++++.+++.|+.+++||-.
T Consensus 182 ~p~~~f~~~f~~~r~~gl~lt~HaGE 207 (345)
T COG1816 182 YPPELFVSLFKLARDNGLKLTIHAGE 207 (345)
T ss_pred CCHHHHHHHHHHHHHcCceEEEeccc
Confidence 45678999999999999999999853
No 154
>PRK01060 endonuclease IV; Provisional
Probab=73.64 E-value=40 Score=33.97 Aligned_cols=89 Identities=16% Similarity=0.139 Sum_probs=60.1
Q ss_pred HHHHHHHHHHcCCcEEEEEEeeCCCc---CCCHHHHHHHHHHHHHcCCe---EEEecCch-hhhHHHHHHHHHcCCCCCC
Q psy6858 153 QQEMAELCEKHGVNSFKTFMAYKGLY---MLSDGELYDAFSAIKNLGAI---AMVHAENG-EIIDKNTQKLLAAGIKGPE 225 (592)
Q Consensus 153 ~~~~~~lv~~~Gv~~~k~~~~~~~~~---~~~~~~l~~~~~~a~~~g~~---~~vHae~~-~~i~~~~~~~~~~G~~~p~ 225 (592)
.++.-+.+++.|..++.++......+ ..+++++.++.+.++++|+. +.+|+... .+. .
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~gl~~~~~~~h~~~~~nl~-------------~-- 78 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYGISPEDILVHAPYLINLG-------------N-- 78 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCCCCceEEecceEecCC-------------C--
Confidence 44455556677999999887532221 46788899999999999998 78886421 000 0
Q ss_pred CccCCCc--HHHHHHHHHHHHHHhcccCCCEEEEecc
Q psy6858 226 GHQLSRP--EEVEAEAVTRACTIANQVDCPLYVVHIM 260 (592)
Q Consensus 226 ~~~~s~p--~~~e~eav~~~i~la~~~~~pl~i~hv~ 260 (592)
..+ .+...+.+.+++.+|++.|++..++|..
T Consensus 79 ----~d~~~r~~s~~~~~~~i~~A~~lga~~vv~h~G 111 (281)
T PRK01060 79 ----PNKEILEKSRDFLIQEIERCAALGAKLLVFHPG 111 (281)
T ss_pred ----CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 001 1122466788999999999998888876
No 155
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=69.94 E-value=1.4e+02 Score=32.54 Aligned_cols=124 Identities=14% Similarity=0.063 Sum_probs=70.0
Q ss_pred HHHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccccccCCChHHHHHHHHHHHHcCCcEEEEEEee
Q psy6858 95 HGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAY 174 (592)
Q Consensus 95 ~~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~Gv~~~k~~~~~ 174 (592)
.-.+.|++.|+..+.=+...+....+.++++..++... ...+..+... .+..+.+...++.+.+.+.|+..+.+-
T Consensus 100 ~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~-~v~~~i~~t~-~p~~~~~~~~~~a~~l~~~Gad~I~i~--- 174 (448)
T PRK12331 100 SFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGG-HAQVAISYTT-SPVHTIDYFVKLAKEMQEMGADSICIK--- 174 (448)
T ss_pred HHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCC-eEEEEEEeec-CCCCCHHHHHHHHHHHHHcCCCEEEEc---
Confidence 34577888999988654433322233444443333321 1111112111 134555555555555556798865432
Q ss_pred CCCcCCCHHHHHHHHHHHHH-cCCeEEEecCchhh-hHHHHHHHHHcCCCC
Q psy6858 175 KGLYMLSDGELYDAFSAIKN-LGAIAMVHAENGEI-IDKNTQKLLAAGIKG 223 (592)
Q Consensus 175 ~~~~~~~~~~l~~~~~~a~~-~g~~~~vHae~~~~-i~~~~~~~~~~G~~~ 223 (592)
.....+++.+++++++..++ .++++.+|+.|..- .....-..++.|++.
T Consensus 175 Dt~G~l~P~~v~~lv~alk~~~~~pi~~H~Hnt~GlA~AN~laAieaGad~ 225 (448)
T PRK12331 175 DMAGILTPYVAYELVKRIKEAVTVPLEVHTHATSGIAEMTYLKAIEAGADI 225 (448)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCcHHHHHHHHHHcCCCE
Confidence 12335789999999988876 47899999876432 233445567888654
No 156
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=69.47 E-value=1.2e+02 Score=32.47 Aligned_cols=167 Identities=19% Similarity=0.169 Sum_probs=96.0
Q ss_pred CCChhhHHHHHHHHHcCCeeEEeccccCCCC--------ccHHHHHHHHHHHhccCceee---ee-ccccccCCChHHHH
Q psy6858 87 ATSVDDFYHGTKAAVAGGTTTIIDFALPRKG--------ESLIKTYESWRQKADEKVCCD---YA-LHVGITWWSDQVQQ 154 (592)
Q Consensus 87 ~~~~d~~~~~~~~ala~GtTti~d~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~ 154 (592)
.+..+|+...+..+=..|..++--+ .+..- ++..+-+++.++.... -... .| --++.....+++.+
T Consensus 24 Rmrt~DmlPi~e~lD~~G~~slE~W-GGATFDaciRfLnEDPWeRLr~lk~~~~n-T~LQMLlRGQNlvGYrhyaDDvVe 101 (472)
T COG5016 24 RMRTEDMLPIAEALDKVGYWSLEVW-GGATFDACIRFLNEDPWERLRELKKAVPN-TKLQMLLRGQNLVGYRHYADDVVE 101 (472)
T ss_pred HHhHHhhHHHHHHHHhcCeeEEEec-CCccHHHHHHHhcCCHHHHHHHHHHhCCC-cHHHHHHccCccccccCCchHHHH
Confidence 3455677676777777888888422 11111 2222333333332221 1111 11 12355677888888
Q ss_pred HHHHHHHHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEec-------CchhhhHHHHHHHHHcCCCCCCCc
Q psy6858 155 EMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHA-------ENGEIIDKNTQKLLAAGIKGPEGH 227 (592)
Q Consensus 155 ~~~~lv~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHa-------e~~~~i~~~~~~~~~~G~~~p~~~ 227 (592)
...+...+.|+.-|++|-+.. +...|...++.++++|+.++.-. .+-+.-.+..++++++|+.+..--
T Consensus 102 ~Fv~ka~~nGidvfRiFDAlN-----D~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~g~DSIciK 176 (472)
T COG5016 102 KFVEKAAENGIDVFRIFDALN-----DVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELLEMGVDSICIK 176 (472)
T ss_pred HHHHHHHhcCCcEEEechhcc-----chhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHHHcCCCEEEee
Confidence 777777778999999997643 44578999999999998655432 233333456788899998654311
Q ss_pred ---cCCCcHHHHHHHHHHHHHHhcccCCCEEE-EecccHHH
Q psy6858 228 ---QLSRPEEVEAEAVTRACTIANQVDCPLYV-VHIMSKAA 264 (592)
Q Consensus 228 ---~~s~p~~~e~eav~~~i~la~~~~~pl~i-~hv~s~~a 264 (592)
-+..|... .+-.-.+-+..+.|+++ +|..+.-+
T Consensus 177 DmaGlltP~~a----yelVk~iK~~~~~pv~lHtH~TsG~a 213 (472)
T COG5016 177 DMAGLLTPYEA----YELVKAIKKELPVPVELHTHATSGMA 213 (472)
T ss_pred cccccCChHHH----HHHHHHHHHhcCCeeEEecccccchH
Confidence 23445543 22333445667788775 24444433
No 157
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=69.18 E-value=1.6e+02 Score=32.64 Aligned_cols=126 Identities=13% Similarity=0.094 Sum_probs=72.7
Q ss_pred HHHHHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCc--eeeeeccccccCCChHHHHHHHHHHHHcCCcEEEE
Q psy6858 93 FYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKV--CCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKT 170 (592)
Q Consensus 93 ~~~~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~lv~~~Gv~~~k~ 170 (592)
...-.+.+.+.|+..++-|...+.-..+..+++..+.... .+ .+.|.. .+..+.+...++.+.+.+.|+..+.+
T Consensus 99 v~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~-~~~~~i~yt~---sp~~t~e~~~~~a~~l~~~Gad~I~I 174 (499)
T PRK12330 99 VDRFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGK-HAQGTICYTV---SPIHTVEGFVEQAKRLLDMGADSICI 174 (499)
T ss_pred HHHHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCC-eEEEEEEEec---CCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 3445778888999998644333322333344444433322 22 222222 12345555555555555679886643
Q ss_pred EEeeCCCcCCCHHHHHHHHHHHHHc---CCeEEEecCchh-hhHHHHHHHHHcCCCCCC
Q psy6858 171 FMAYKGLYMLSDGELYDAFSAIKNL---GAIAMVHAENGE-IIDKNTQKLLAAGIKGPE 225 (592)
Q Consensus 171 ~~~~~~~~~~~~~~l~~~~~~a~~~---g~~~~vHae~~~-~i~~~~~~~~~~G~~~p~ 225 (592)
- . ....+++.+.++++...++. ++++.+|+.+.. .........++.|+....
T Consensus 175 k-D--taGll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad~vD 230 (499)
T PRK12330 175 K-D--MAALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVDVVD 230 (499)
T ss_pred C-C--CccCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCCEEE
Confidence 1 1 23357899999999998875 589999987643 233345566788876543
No 158
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=68.08 E-value=1.4e+02 Score=30.33 Aligned_cols=123 Identities=15% Similarity=0.098 Sum_probs=69.3
Q ss_pred HHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccc-cccCCChHHHHHHHHHHHHcCCcEEEEEEeeC
Q psy6858 97 TKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHV-GITWWSDQVQQEMAELCEKHGVNSFKTFMAYK 175 (592)
Q Consensus 97 ~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lv~~~Gv~~~k~~~~~~ 175 (592)
.+.+...|+..|.=+...+.-..+.+..+..+... ..+.+.+.+ ..+.++++...++.+.+.+.|+..+.+- .
T Consensus 97 i~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G---~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~---D 170 (275)
T cd07937 97 VEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAG---KHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIK---D 170 (275)
T ss_pred HHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCC---CeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEc---C
Confidence 45667788887754332222222333334333332 122222221 2255666666666666667798866432 2
Q ss_pred CCcCCCHHHHHHHHHHHHH-cCCeEEEecCchhh-hHHHHHHHHHcCCCCCC
Q psy6858 176 GLYMLSDGELYDAFSAIKN-LGAIAMVHAENGEI-IDKNTQKLLAAGIKGPE 225 (592)
Q Consensus 176 ~~~~~~~~~l~~~~~~a~~-~g~~~~vHae~~~~-i~~~~~~~~~~G~~~p~ 225 (592)
....++++++.++++..++ .+.++.+|+.|..- ........++.|+...+
T Consensus 171 T~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~aN~laA~~aGa~~vd 222 (275)
T cd07937 171 MAGLLTPYAAYELVKALKKEVGLPIHLHTHDTSGLAVATYLAAAEAGVDIVD 222 (275)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCeEEEEecCCCChHHHHHHHHHHhCCCEEE
Confidence 3345789999999998876 47889999876432 22334445567765433
No 159
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=66.97 E-value=2.1e+02 Score=32.58 Aligned_cols=124 Identities=13% Similarity=0.087 Sum_probs=75.3
Q ss_pred HHHHHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCcee--eeeccccccCCChHHHHHHHHHHHHcCCcEEEE
Q psy6858 93 FYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCC--DYALHVGITWWSDQVQQEMAELCEKHGVNSFKT 170 (592)
Q Consensus 93 ~~~~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~lv~~~Gv~~~k~ 170 (592)
++.-.+.|.+.|+..++-|-.-+.-..+..+++..++... .+.+ .|.. .+..+.+...++.+.+.+.|+..+.+
T Consensus 98 v~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~-~~~~~i~yt~---sp~~t~e~~~~~ak~l~~~Gad~I~I 173 (596)
T PRK14042 98 VRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKK-HAQGAICYTT---SPVHTLDNFLELGKKLAEMGCDSIAI 173 (596)
T ss_pred HHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCC-EEEEEEEecC---CCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 3446778899999999855433333344555555544432 2222 2322 33556666666666556679886543
Q ss_pred EEeeCCCcCCCHHHHHHHHHHHHH-cCCeEEEecCchhhh-HHHHHHHHHcCCCC
Q psy6858 171 FMAYKGLYMLSDGELYDAFSAIKN-LGAIAMVHAENGEII-DKNTQKLLAAGIKG 223 (592)
Q Consensus 171 ~~~~~~~~~~~~~~l~~~~~~a~~-~g~~~~vHae~~~~i-~~~~~~~~~~G~~~ 223 (592)
- . ....+++.+.++++...++ .++++.+|+.+..-. .......++.|+..
T Consensus 174 k-D--taG~l~P~~v~~lv~alk~~~~ipi~~H~Hnt~Gla~an~laAieaGad~ 225 (596)
T PRK14042 174 K-D--MAGLLTPTVTVELYAGLKQATGLPVHLHSHSTSGLASICHYEAVLAGCNH 225 (596)
T ss_pred C-C--cccCCCHHHHHHHHHHHHhhcCCEEEEEeCCCCCcHHHHHHHHHHhCCCE
Confidence 2 1 2235789999999988886 478999998764332 23445567888654
No 160
>PRK07328 histidinol-phosphatase; Provisional
Probab=66.29 E-value=1.5e+02 Score=29.79 Aligned_cols=34 Identities=24% Similarity=0.043 Sum_probs=24.2
Q ss_pred ccccCcCcccccCCCCChhhHHHHHHHHHcCCeeEEe
Q psy6858 73 GIDPHTHFELELMGATSVDDFYHGTKAAVAGGTTTII 109 (592)
Q Consensus 73 ~ID~HtH~~~~~~~~~~~d~~~~~~~~ala~GtTti~ 109 (592)
.+|.|+|......+..+ +....+.|.+.|.+++.
T Consensus 3 ~~D~H~HT~~s~~~~~~---~ee~v~~A~~~Gl~~i~ 36 (269)
T PRK07328 3 LVDYHMHTPLCGHAVGT---PEEYVQAARRAGLKEIG 36 (269)
T ss_pred ceeeccCCCCCCCCCCC---HHHHHHHHHHCCCCEEE
Confidence 47999998665444344 44458889999999874
No 161
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=65.60 E-value=66 Score=32.59 Aligned_cols=98 Identities=15% Similarity=0.108 Sum_probs=56.7
Q ss_pred HHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHc---CCeEEEecC--chhhhHHHHHHHHHcCCCCCCCc--cCCCcH
Q psy6858 161 EKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNL---GAIAMVHAE--NGEIIDKNTQKLLAAGIKGPEGH--QLSRPE 233 (592)
Q Consensus 161 ~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~---g~~~~vHae--~~~~i~~~~~~~~~~G~~~p~~~--~~s~p~ 233 (592)
.+.|++++-+.-.....+.++++|..++++.+.+. ..++.+++. +.....+..+.+.+.|.++.--. .+..+.
T Consensus 31 ~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P~~~~~~ 110 (284)
T cd00950 31 IENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTPYYNKPS 110 (284)
T ss_pred HHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEcccccCCCC
Confidence 34688877654333344567888888877766654 355666653 33334455566677776542110 111222
Q ss_pred HHHHHHHHHHHHHhcccCCCEEEEecc
Q psy6858 234 EVEAEAVTRACTIANQVDCPLYVVHIM 260 (592)
Q Consensus 234 ~~e~eav~~~i~la~~~~~pl~i~hv~ 260 (592)
+.+.+.....+++..++|+.+.+..
T Consensus 111 --~~~l~~~~~~ia~~~~~pi~lYn~P 135 (284)
T cd00950 111 --QEGLYAHFKAIAEATDLPVILYNVP 135 (284)
T ss_pred --HHHHHHHHHHHHhcCCCCEEEEECh
Confidence 2344445556777789999998864
No 162
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=65.31 E-value=2.2e+02 Score=31.33 Aligned_cols=130 Identities=13% Similarity=0.112 Sum_probs=74.1
Q ss_pred hhh-HHHHHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhcc-CceeeeeccccccCCChHHHHHHHHHHHHcCCcE
Q psy6858 90 VDD-FYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADE-KVCCDYALHVGITWWSDQVQQEMAELCEKHGVNS 167 (592)
Q Consensus 90 ~d~-~~~~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~Gv~~ 167 (592)
+|+ ...-.+.|.+.|+..++-+-..+....+..+++..++.... ..+..|.. .+..+.+...++.+.+.+.|+..
T Consensus 103 pddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~---sp~~t~~y~~~~a~~l~~~Gad~ 179 (468)
T PRK12581 103 ADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYTT---SPVHTLNYYLSLVKELVEMGADS 179 (468)
T ss_pred cchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEEe---CCcCcHHHHHHHHHHHHHcCCCE
Confidence 344 33447778899999998554333333444555544443321 01222222 23334444445444445579886
Q ss_pred EEEEEeeCCCcCCCHHHHHHHHHHHHHc-CCeEEEecCchhh-hHHHHHHHHHcCCCCCC
Q psy6858 168 FKTFMAYKGLYMLSDGELYDAFSAIKNL-GAIAMVHAENGEI-IDKNTQKLLAAGIKGPE 225 (592)
Q Consensus 168 ~k~~~~~~~~~~~~~~~l~~~~~~a~~~-g~~~~vHae~~~~-i~~~~~~~~~~G~~~p~ 225 (592)
+.+- . ....+++.+++++++..++. ++++.+|+.+..- .....-..++.|+....
T Consensus 180 I~Ik-D--taG~l~P~~v~~Lv~alk~~~~~pi~~H~Hnt~GlA~An~laAieAGad~vD 236 (468)
T PRK12581 180 ICIK-D--MAGILTPKAAKELVSGIKAMTNLPLIVHTHATSGISQMTYLAAVEAGADRID 236 (468)
T ss_pred EEEC-C--CCCCcCHHHHHHHHHHHHhccCCeEEEEeCCCCccHHHHHHHHHHcCCCEEE
Confidence 6432 1 23357899999999988874 5889999876432 33345556788865433
No 163
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=64.85 E-value=1.9e+02 Score=30.90 Aligned_cols=127 Identities=18% Similarity=0.188 Sum_probs=72.1
Q ss_pred HHHHHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhc-cCceeeeeccccccCCChHHHHHHHHHHHHcCCcEEEEE
Q psy6858 93 FYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKAD-EKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTF 171 (592)
Q Consensus 93 ~~~~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~Gv~~~k~~ 171 (592)
...-.+.+..+|++.++-|=.-+....+..+++..++... ..+.+.|.... .++-+..-++.+-..+.|+.++-+
T Consensus 100 Ve~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT~sP---vHt~e~yv~~akel~~~g~DSIci- 175 (472)
T COG5016 100 VEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYTTSP---VHTLEYYVELAKELLEMGVDSICI- 175 (472)
T ss_pred HHHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEEeccCC---cccHHHHHHHHHHHHHcCCCEEEe-
Confidence 3445778889999999866433333345555555544433 12233333322 222222333333333458876532
Q ss_pred EeeCCCcCCCHHHHHHHHHHHHH-cCCeEEEecCc-hhhhHHHHHHHHHcCCCCCC
Q psy6858 172 MAYKGLYMLSDGELYDAFSAIKN-LGAIAMVHAEN-GEIIDKNTQKLLAAGIKGPE 225 (592)
Q Consensus 172 ~~~~~~~~~~~~~l~~~~~~a~~-~g~~~~vHae~-~~~i~~~~~~~~~~G~~~p~ 225 (592)
-.+.| .+++..-+++++.+++ .++++.+|+.. ........-+..+.|++...
T Consensus 176 KDmaG--lltP~~ayelVk~iK~~~~~pv~lHtH~TsG~a~m~ylkAvEAGvD~iD 229 (472)
T COG5016 176 KDMAG--LLTPYEAYELVKAIKKELPVPVELHTHATSGMAEMTYLKAVEAGVDGID 229 (472)
T ss_pred ecccc--cCChHHHHHHHHHHHHhcCCeeEEecccccchHHHHHHHHHHhCcchhh
Confidence 22223 4689999999999886 58888888643 33344456677788876543
No 164
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=62.34 E-value=89 Score=31.85 Aligned_cols=98 Identities=13% Similarity=0.087 Sum_probs=56.4
Q ss_pred HHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHc---CCeEEEecC--chhhhHHHHHHHHHcCCCCCCC--ccCCCcH
Q psy6858 161 EKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNL---GAIAMVHAE--NGEIIDKNTQKLLAAGIKGPEG--HQLSRPE 233 (592)
Q Consensus 161 ~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~---g~~~~vHae--~~~~i~~~~~~~~~~G~~~p~~--~~~s~p~ 233 (592)
.+.|++++-+.-.....+.++++|-.++++.+.+. ..++.+|+. +.....+..+.+.+.|.++.-- ..+..+.
T Consensus 32 ~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~~~ 111 (292)
T PRK03170 32 IANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPYYNKPT 111 (292)
T ss_pred HHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCCcCCCCC
Confidence 34688877655444445668888877777665553 356677753 3333344456666777653221 1112222
Q ss_pred HHHHHHHHHHHHHhcccCCCEEEEecc
Q psy6858 234 EVEAEAVTRACTIANQVDCPLYVVHIM 260 (592)
Q Consensus 234 ~~e~eav~~~i~la~~~~~pl~i~hv~ 260 (592)
+ .+.+..-..++...+.|+.+.+.-
T Consensus 112 ~--~~i~~~~~~ia~~~~~pv~lYn~P 136 (292)
T PRK03170 112 Q--EGLYQHFKAIAEATDLPIILYNVP 136 (292)
T ss_pred H--HHHHHHHHHHHhcCCCCEEEEECc
Confidence 2 344445556777788999998864
No 165
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=62.03 E-value=97 Score=31.27 Aligned_cols=98 Identities=15% Similarity=0.149 Sum_probs=56.5
Q ss_pred HcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHc---CCeEEEecCc--hhhhHHHHHHHHHcCCCCCCCc--cCCCcHH
Q psy6858 162 KHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNL---GAIAMVHAEN--GEIIDKNTQKLLAAGIKGPEGH--QLSRPEE 234 (592)
Q Consensus 162 ~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~---g~~~~vHae~--~~~i~~~~~~~~~~G~~~p~~~--~~s~p~~ 234 (592)
+.|++++-+.-.....+.++.+|-.++++.+.+. ..++.+++.. .....+..+.+.+.|..+.--. .+..+.
T Consensus 29 ~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~- 107 (281)
T cd00408 29 EAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPYYNKPS- 107 (281)
T ss_pred HcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCCcCCCCC-
Confidence 4588877655444445668888877777766553 3666777533 2223444556667676542211 111122
Q ss_pred HHHHHHHHHHHHhcccCCCEEEEeccc
Q psy6858 235 VEAEAVTRACTIANQVDCPLYVVHIMS 261 (592)
Q Consensus 235 ~e~eav~~~i~la~~~~~pl~i~hv~s 261 (592)
+.+.+.....++...+.|+.+.+...
T Consensus 108 -~~~~~~~~~~ia~~~~~pi~iYn~P~ 133 (281)
T cd00408 108 -QEGIVAHFKAVADASDLPVILYNIPG 133 (281)
T ss_pred -HHHHHHHHHHHHhcCCCCEEEEECcc
Confidence 22344455567777899999887753
No 166
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=61.61 E-value=1.8e+02 Score=29.23 Aligned_cols=98 Identities=19% Similarity=0.225 Sum_probs=59.1
Q ss_pred eccccccCCChHHHHHHHHHHHHcCCcEEEEEEeeCCCc---CCCHHHHHHHHHHHHHcCCe---EEEecCchhhhHHHH
Q psy6858 140 ALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLY---MLSDGELYDAFSAIKNLGAI---AMVHAENGEIIDKNT 213 (592)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~lv~~~Gv~~~k~~~~~~~~~---~~~~~~l~~~~~~a~~~g~~---~~vHae~~~~i~~~~ 213 (592)
|.|+.+.. ...+.++++. +.|.+.|.+|......+ ..+.....++.+.+.++++. +.+|+...
T Consensus 4 g~h~s~~g---~~~~a~~~~~-~~G~~~~qif~~~P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~------- 72 (274)
T TIGR00587 4 GAHVSAAG---GLQAAYNRAA-EIGATAFMFFLKSPRWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYL------- 72 (274)
T ss_pred EEEEeccC---CHHHHHHHHH-HhCCCEEEEEecCccccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCee-------
Confidence 44544442 2233344443 45999999998754433 23455666666667777665 78886431
Q ss_pred HHHHHcCCCCCCCccCCCcH----HHHHHHHHHHHHHhcccCCCEEEEeccc
Q psy6858 214 QKLLAAGIKGPEGHQLSRPE----EVEAEAVTRACTIANQVDCPLYVVHIMS 261 (592)
Q Consensus 214 ~~~~~~G~~~p~~~~~s~p~----~~e~eav~~~i~la~~~~~pl~i~hv~s 261 (592)
..++.|. +...+.+.+++++|+..+++..++|..+
T Consensus 73 -------------iNlas~~~~~r~~sv~~~~~~i~~A~~lga~~vv~H~G~ 111 (274)
T TIGR00587 73 -------------INLASPDEEKEEKSLDVLDEELKRCELLGIMLYNFHPGS 111 (274)
T ss_pred -------------eecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 0011111 1224667788999999999999999864
No 167
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=59.10 E-value=2.1e+02 Score=31.41 Aligned_cols=128 Identities=19% Similarity=0.111 Sum_probs=70.5
Q ss_pred hhh-HHHHHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhcc-CceeeeeccccccCCChHHHHHHHHHHHHcCCcE
Q psy6858 90 VDD-FYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADE-KVCCDYALHVGITWWSDQVQQEMAELCEKHGVNS 167 (592)
Q Consensus 90 ~d~-~~~~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~Gv~~ 167 (592)
++| ...-.+.|++.|+..+.=+...+.-..+..+.+..+..... ..+..|.+ .+.++.+...++.+.+.+.|+..
T Consensus 93 ~dDvv~~fv~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~---~p~~t~e~~~~~a~~l~~~Gad~ 169 (467)
T PRK14041 93 ADDVVELFVKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGAISYTV---SPVHTLEYYLEFARELVDMGVDS 169 (467)
T ss_pred cchhhHHHHHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEEEEecc---CCCCCHHHHHHHHHHHHHcCCCE
Confidence 444 33346778899999886443322222233333333332211 11122222 13445555555555555679886
Q ss_pred EEEEEeeCCCcCCCHHHHHHHHHHHHH-cCCeEEEecCchhh-hHHHHHHHHHcCCCC
Q psy6858 168 FKTFMAYKGLYMLSDGELYDAFSAIKN-LGAIAMVHAENGEI-IDKNTQKLLAAGIKG 223 (592)
Q Consensus 168 ~k~~~~~~~~~~~~~~~l~~~~~~a~~-~g~~~~vHae~~~~-i~~~~~~~~~~G~~~ 223 (592)
+.+- . ....+++.++++++...++ .++++.+|+.|..- .....-..++.|+..
T Consensus 170 I~i~-D--t~G~l~P~~v~~Lv~~lk~~~~vpI~~H~Hnt~GlA~AN~laAieaGad~ 224 (467)
T PRK14041 170 ICIK-D--MAGLLTPKRAYELVKALKKKFGVPVEVHSHCTTGLASLAYLAAVEAGADM 224 (467)
T ss_pred EEEC-C--ccCCcCHHHHHHHHHHHHHhcCCceEEEecCCCCcHHHHHHHHHHhCCCE
Confidence 5432 1 2335789999999988876 47889999876432 223345566778654
No 168
>TIGR01431 adm_rel adenosine deaminase-related growth factor. Members of this family have been described as secreted proteins with growth factor activity and regions of adenosine deaminase homology in insects, mollusks, and vertebrates.
Probab=58.30 E-value=2.9e+02 Score=30.49 Aligned_cols=21 Identities=24% Similarity=0.191 Sum_probs=17.8
Q ss_pred HHHHHhcCCceEEeCCCCCCC
Q psy6858 326 LLTLLNENALQTTGSDNCTFN 346 (592)
Q Consensus 326 l~~~l~~G~~~~~gsD~~~~~ 346 (592)
+..+++.|++++++||...+.
T Consensus 396 l~~lla~Gvpv~InSDDP~~~ 416 (479)
T TIGR01431 396 CAYLFADNYPMVISSDDPAFW 416 (479)
T ss_pred HHHHHHCCCcEEEeCCCcccc
Confidence 447899999999999998653
No 169
>PRK07945 hypothetical protein; Provisional
Probab=57.17 E-value=2.5e+02 Score=29.36 Aligned_cols=33 Identities=24% Similarity=0.171 Sum_probs=23.7
Q ss_pred ccccCcCcccccCCCCChhhHHHHHHHHHcCCeeEEe
Q psy6858 73 GIDPHTHFELELMGATSVDDFYHGTKAAVAGGTTTII 109 (592)
Q Consensus 73 ~ID~HtH~~~~~~~~~~~d~~~~~~~~ala~GtTti~ 109 (592)
.+|.|+|-..+. +.. .+....++|.+.|.+.+.
T Consensus 97 ~~D~H~HT~~Sd-g~~---~~ee~v~~Ai~~Gl~~i~ 129 (335)
T PRK07945 97 RGDLHTHSDWSD-GGS---PIEEMARTAAALGHEYCA 129 (335)
T ss_pred hhhcccccCCCC-CCC---CHHHHHHHHHHCCCCEEE
Confidence 479999987652 333 344558889999999873
No 170
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=55.95 E-value=1.4e+02 Score=30.26 Aligned_cols=97 Identities=15% Similarity=0.108 Sum_probs=56.0
Q ss_pred HcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHc---CCeEEEecC--chhhhHHHHHHHHHcCCCCCCCc--cCCCcHH
Q psy6858 162 KHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNL---GAIAMVHAE--NGEIIDKNTQKLLAAGIKGPEGH--QLSRPEE 234 (592)
Q Consensus 162 ~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~---g~~~~vHae--~~~~i~~~~~~~~~~G~~~p~~~--~~s~p~~ 234 (592)
+.|++++-+.-.....+.++++|-.++++.+.+. ..++.+++. +.....+..+.+.+.|.++.--. .+.++.+
T Consensus 30 ~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~ 109 (285)
T TIGR00674 30 ENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTPYYNKPTQ 109 (285)
T ss_pred HcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCH
Confidence 4688877654333344568888888877766653 356677753 23333345566667776542211 1122322
Q ss_pred HHHHHHHHHHHHhcccCCCEEEEecc
Q psy6858 235 VEAEAVTRACTIANQVDCPLYVVHIM 260 (592)
Q Consensus 235 ~e~eav~~~i~la~~~~~pl~i~hv~ 260 (592)
.+.+..-..+++..+.|+.+.+.-
T Consensus 110 --~~i~~~~~~i~~~~~~pi~lYn~P 133 (285)
T TIGR00674 110 --EGLYQHFKAIAEEVDLPIILYNVP 133 (285)
T ss_pred --HHHHHHHHHHHhcCCCCEEEEECc
Confidence 234445556677789999988765
No 171
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=55.89 E-value=1.1e+02 Score=31.66 Aligned_cols=98 Identities=17% Similarity=0.079 Sum_probs=58.4
Q ss_pred HcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHc---CCeEEEecC--chhhhHHHHHHHHHcCCCCCCCc--cCCCcHH
Q psy6858 162 KHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNL---GAIAMVHAE--NGEIIDKNTQKLLAAGIKGPEGH--QLSRPEE 234 (592)
Q Consensus 162 ~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~---g~~~~vHae--~~~~i~~~~~~~~~~G~~~p~~~--~~s~p~~ 234 (592)
+.|+.++-+.-+......++++|-.++++.+.+. .+++.+|+. +.....+..+...+.|.++.--. .+-.+.+
T Consensus 40 ~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~~ 119 (309)
T cd00952 40 AAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMWLPLDV 119 (309)
T ss_pred HcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcCCCCCH
Confidence 4688887665444455678888888877766542 366777753 34344455666777776542211 1122222
Q ss_pred HHHHHHHHHHHHhccc-CCCEEEEeccc
Q psy6858 235 VEAEAVTRACTIANQV-DCPLYVVHIMS 261 (592)
Q Consensus 235 ~e~eav~~~i~la~~~-~~pl~i~hv~s 261 (592)
.+.+..-.++++.. ++|+.+.|.-.
T Consensus 120 --~~l~~yf~~va~a~~~lPv~iYn~P~ 145 (309)
T cd00952 120 --DTAVQFYRDVAEAVPEMAIAIYANPE 145 (309)
T ss_pred --HHHHHHHHHHHHhCCCCcEEEEcCch
Confidence 23344455567777 69999988753
No 172
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=53.91 E-value=2.4e+02 Score=28.07 Aligned_cols=33 Identities=21% Similarity=0.209 Sum_probs=23.1
Q ss_pred cccCcCcccccCCCCChhhHHHHHHHHHcCCeeEEe
Q psy6858 74 IDPHTHFELELMGATSVDDFYHGTKAAVAGGTTTII 109 (592)
Q Consensus 74 ID~HtH~~~~~~~~~~~d~~~~~~~~ala~GtTti~ 109 (592)
+|.|+|......+.. .+..-.++|.+.|.+.+.
T Consensus 1 ~D~H~Ht~~s~d~~~---~~ee~v~~A~~~Gl~~i~ 33 (253)
T TIGR01856 1 RDGHSHSPFCAHGTD---TLEEVVQEAIQLGFEEIC 33 (253)
T ss_pred CCcccCcCCCCCCCC---CHHHHHHHHHHcCCCEEE
Confidence 589999865433333 344558889999999873
No 173
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=53.86 E-value=3.1e+02 Score=29.46 Aligned_cols=50 Identities=28% Similarity=0.444 Sum_probs=31.5
Q ss_pred cCCCEEeeCccccCcCccc----------------ccCCCCChhhHHHHHHHHHcCCeeEEeccccC
Q psy6858 64 AAGSYVIPGGIDPHTHFEL----------------ELMGATSVDDFYHGTKAAVAGGTTTIIDFALP 114 (592)
Q Consensus 64 a~G~~V~PG~ID~HtH~~~----------------~~~~~~~~d~~~~~~~~ala~GtTti~d~~~~ 114 (592)
|.|++|+|.=++ |..+.. ........+.-..-.+.|+..|.-||.|...+
T Consensus 35 A~G~iVIp~N~~-h~~~~p~~IG~gl~tKVNaNIGtS~~~~d~~~E~~K~~~A~~~GADtiMDLStg 100 (431)
T PRK13352 35 AEGRIVIPANIN-HKNLKPVGIGKGLRTKVNANIGTSSDISDIEEELEKAKVAVKYGADTIMDLSTG 100 (431)
T ss_pred hCceEEEecCCC-CCCCCeeEEcCCceeEEeeeecCCCCCCCHHHHHHHHHHHHHcCCCeEeeccCC
Confidence 678999998777 665421 01112233333345678899999999998543
No 174
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=53.61 E-value=1.5e+02 Score=30.17 Aligned_cols=107 Identities=13% Similarity=0.072 Sum_probs=60.0
Q ss_pred HHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHc---CCeEEEecC-chhhhHHHHHHHHHcCCCC----CCCccCCCc
Q psy6858 161 EKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNL---GAIAMVHAE-NGEIIDKNTQKLLAAGIKG----PEGHQLSRP 232 (592)
Q Consensus 161 ~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~---g~~~~vHae-~~~~i~~~~~~~~~~G~~~----p~~~~~s~p 232 (592)
.+.|+.++-+.-+....+.++.+|-.++++.+.+. ..++.++.. +.....+..+.+.+.|..+ |-.+. .+
T Consensus 31 ~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~t~~~i~~a~~a~~~Gad~v~~~pP~y~--~~ 108 (289)
T cd00951 31 LSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGYGTATAIAYAQAAEKAGADGILLLPPYLT--EA 108 (289)
T ss_pred HHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCCCHHHHHHHHHHHHHhCCCEEEECCCCCC--CC
Confidence 34688877655444445678888877777765553 356666653 3333334456667777655 22222 22
Q ss_pred HHHHHHHHHHHHHHhcccCCCEEEEeccc-HHHHHHHHHH
Q psy6858 233 EEVEAEAVTRACTIANQVDCPLYVVHIMS-KAAGDAMAYK 271 (592)
Q Consensus 233 ~~~e~eav~~~i~la~~~~~pl~i~hv~s-~~a~~~i~~a 271 (592)
.+ .+.+..--.+++..++|+.+.+... .-..+.+.++
T Consensus 109 ~~--~~i~~~f~~v~~~~~~pi~lYn~~g~~l~~~~l~~L 146 (289)
T cd00951 109 PQ--EGLYAHVEAVCKSTDLGVIVYNRANAVLTADSLARL 146 (289)
T ss_pred CH--HHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHH
Confidence 22 2333344456677789999887542 1234444444
No 175
>KOG3020|consensus
Probab=53.40 E-value=2.7e+02 Score=28.59 Aligned_cols=134 Identities=14% Similarity=0.123 Sum_probs=73.1
Q ss_pred CCCEEeeCccccCcCcccccCCCCChhhHHHHHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeecccc
Q psy6858 65 AGSYVIPGGIDPHTHFELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVG 144 (592)
Q Consensus 65 ~G~~V~PG~ID~HtH~~~~~~~~~~~d~~~~~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 144 (592)
.-.+--|.++|+|.|++.........+ -...|...|+.-++.+ +....+...+++..... .+......|.|.-
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~d~s~----v~~~a~~~~v~~~~v~--gt~~~d~~~~~~l~~~y-~~~v~~t~G~HP~ 82 (296)
T KOG3020|consen 10 GRNFTNPMLEDIYCHIQAHPSDSDASQ----VLERAVQAGVSKLIVT--GTSLKDSKEALELAEKY-PGSVYPTFGVHPH 82 (296)
T ss_pred hhhhcchhhchhhhccccCCCCccchH----HHHHHHhccceEEEEe--CCCcchHHHHHHHHhhC-CCceeeccCcCCC
Confidence 334555779999999976543322222 2345667788888644 33333444444433333 2345566666643
Q ss_pred -ccCCCh-----HHHHHHHHHHHH---cCCcEEEE-EEeeCCCcCCCHH----HHHHHHHHHHHcCCeEEEecCc
Q psy6858 145 -ITWWSD-----QVQQEMAELCEK---HGVNSFKT-FMAYKGLYMLSDG----ELYDAFSAIKNLGAIAMVHAEN 205 (592)
Q Consensus 145 -~~~~~~-----~~~~~~~~lv~~---~Gv~~~k~-~~~~~~~~~~~~~----~l~~~~~~a~~~g~~~~vHae~ 205 (592)
...|.+ ...+++..++.+ ..+..+.. .+.|....-.+.+ -|.+-+++|.++..++.+|..+
T Consensus 83 ~~~~~~~~~~~~~~~~~L~~~~~~~~~~k~vAiGEcGLD~~r~~~~~~~~Qk~vFekQl~LA~~~~~Pl~iH~r~ 157 (296)
T KOG3020|consen 83 FSQEFSDQSRKEKFLDTLLSIIENGFLPKVVAIGECGLDYDRLQFSDKEEQKTVFEKQLDLAKRLKLPLFIHCRS 157 (296)
T ss_pred cccchhhccchhhHHHHHHHHHhhcccCCeEEeeccccccchhccCChHHHHHHHHHHHHHHHHccCCeeeechh
Confidence 233444 356677777765 11222221 1222222111222 2778889999999999999876
No 176
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=51.68 E-value=3.3e+02 Score=29.03 Aligned_cols=107 Identities=14% Similarity=0.166 Sum_probs=61.4
Q ss_pred CChhhHHHHHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccccccCCChHHHHHHHHHHHHcCCcE
Q psy6858 88 TSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNS 167 (592)
Q Consensus 88 ~~~d~~~~~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~Gv~~ 167 (592)
++.++-..-.+...+.||..| +...|..++.-.+.++....... ...+..|.....++++.+. +.|+..
T Consensus 23 ~s~e~k~~ia~~L~~~GV~~I-E~G~p~~~~~~~e~i~~i~~~~~---------~~~i~~~~r~~~~di~~a~-~~g~~~ 91 (378)
T PRK11858 23 FTNEEKLAIARMLDEIGVDQI-EAGFPAVSEDEKEAIKAIAKLGL---------NASILALNRAVKSDIDASI-DCGVDA 91 (378)
T ss_pred CCHHHHHHHHHHHHHhCCCEE-EEeCCCcChHHHHHHHHHHhcCC---------CeEEEEEcccCHHHHHHHH-hCCcCE
Confidence 455555556667778899887 34445544444445555443211 1112223333345566655 468988
Q ss_pred EEEEEeeCCC-----cCCCH----HHHHHHHHHHHHcCCeEEEecCc
Q psy6858 168 FKTFMAYKGL-----YMLSD----GELYDAFSAIKNLGAIAMVHAEN 205 (592)
Q Consensus 168 ~k~~~~~~~~-----~~~~~----~~l~~~~~~a~~~g~~~~vHae~ 205 (592)
+.++..-... ...+. +.+.++++.|++.|..+.+.+++
T Consensus 92 i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed 138 (378)
T PRK11858 92 VHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAED 138 (378)
T ss_pred EEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 8888753221 12233 34556888999999999888754
No 177
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=51.46 E-value=2.5e+02 Score=28.75 Aligned_cols=66 Identities=21% Similarity=0.321 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHcCCcEEEEEEe-eCCCc----CCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCC
Q psy6858 152 VQQEMAELCEKHGVNSFKTFMA-YKGLY----MLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGI 221 (592)
Q Consensus 152 ~~~~~~~lv~~~Gv~~~k~~~~-~~~~~----~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~ 221 (592)
..++..+++++-|+..+-+..+ -|+.| .++.+.|.++- +..+.++..|-..+- -.+..+++.+.|+
T Consensus 156 ~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~---~~~~vPLVLHGgSG~-~~e~~~~ai~~Gi 226 (284)
T PRK09195 156 DPAQAREFVEATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIR---QWVNIPLVLHGASGL-PTKDIQQTIKLGI 226 (284)
T ss_pred CHHHHHHHHHHHCcCEEeeccCccccccCCCCcCCHHHHHHHH---HHhCCCeEEecCCCC-CHHHHHHHHHcCC
Confidence 3567777887779988876554 24443 45555555553 345899999965542 2334455555554
No 178
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=49.36 E-value=2.9e+02 Score=27.69 Aligned_cols=93 Identities=14% Similarity=0.104 Sum_probs=58.5
Q ss_pred HHHHHHHHHHcCCcEEEEEEeeCCCc---CCCHHHHHHHHHHHHHc-CCeEEEecCchhhhHHHHHHHHHcCCCCCCCcc
Q psy6858 153 QQEMAELCEKHGVNSFKTFMAYKGLY---MLSDGELYDAFSAIKNL-GAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQ 228 (592)
Q Consensus 153 ~~~~~~lv~~~Gv~~~k~~~~~~~~~---~~~~~~l~~~~~~a~~~-g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~ 228 (592)
.++.-+++++.|...+.+.+.....+ ..+++++.++.+.+.++ +..+.+|+.... +...+
T Consensus 12 l~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~------------~~~~~---- 75 (279)
T cd00019 12 LENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLSVHAPYLI------------NLASP---- 75 (279)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCcee------------ccCCC----
Confidence 34445556677988887766532221 13568899999999998 888888864210 00000
Q ss_pred CCCcHHHHHHHHHHHHHHhcccCCCEEEEeccc
Q psy6858 229 LSRPEEVEAEAVTRACTIANQVDCPLYVVHIMS 261 (592)
Q Consensus 229 ~s~p~~~e~eav~~~i~la~~~~~pl~i~hv~s 261 (592)
.........+.+.+++++|...|++..++|...
T Consensus 76 ~~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~ 108 (279)
T cd00019 76 DKEKREKSIERLKDEIERCEELGIRLLVFHPGS 108 (279)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 000011223567889999999999988887774
No 179
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=49.07 E-value=2.9e+02 Score=28.25 Aligned_cols=65 Identities=20% Similarity=0.313 Sum_probs=38.6
Q ss_pred HHHHHHHHHHcCCcEEEEEEe-eCCCcC----CCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCC
Q psy6858 153 QQEMAELCEKHGVNSFKTFMA-YKGLYM----LSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGI 221 (592)
Q Consensus 153 ~~~~~~lv~~~Gv~~~k~~~~-~~~~~~----~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~ 221 (592)
.++..+++++-|+..+-+..+ -|+.|. ++.+.|.++ .+..+.++..|-..+-. .+..+++.+.|+
T Consensus 157 peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I---~~~~~vPLVLHGgSG~~-~e~~~kai~~GI 226 (286)
T PRK12738 157 PQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEI---REVVDVPLVLHGASDVP-DEFVRRTIELGV 226 (286)
T ss_pred HHHHHHHHHHhCCCEEEeccCcccCCCCCCCcCCHHHHHHH---HHHhCCCEEEeCCCCCC-HHHHHHHHHcCC
Confidence 567777787779998877654 355553 333334333 34458999999655432 333444445444
No 180
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=48.49 E-value=63 Score=31.00 Aligned_cols=43 Identities=23% Similarity=0.184 Sum_probs=29.6
Q ss_pred HHHHHHHHHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeE
Q psy6858 154 QEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIA 199 (592)
Q Consensus 154 ~~~~~lv~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~ 199 (592)
+..-.++++.|..++|.| .++++ -..+|++.+.+.|.+.|+.+
T Consensus 138 etAiaml~dmG~~SiKff-Pm~Gl--~~leE~~avAkA~a~~g~~l 180 (218)
T PF07071_consen 138 ETAIAMLKDMGGSSIKFF-PMGGL--KHLEELKAVAKACARNGFTL 180 (218)
T ss_dssp HHHHHHHHHTT--EEEE----TTT--TTHHHHHHHHHHHHHCT-EE
T ss_pred HHHHHHHHHcCCCeeeEe-ecCCc--ccHHHHHHHHHHHHHcCcee
Confidence 444556778899999966 45554 37889999999999999887
No 181
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=47.31 E-value=3.5e+02 Score=28.19 Aligned_cols=166 Identities=14% Similarity=0.149 Sum_probs=101.0
Q ss_pred HHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccccccCCChHHHHHHHHHHHHcCCcEEEEEEeeCC
Q psy6858 97 TKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKG 176 (592)
Q Consensus 97 ~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~Gv~~~k~~~~~~~ 176 (592)
.++.-..|.-.|+=.+ +...-.+++.+.++...-....|+.++. .+...+.+.|+..+++-.+ +
T Consensus 42 I~~L~~aG~dIVRvtv---~~~e~A~A~~~Ik~~~~vPLVaDiHf~~-----------rla~~~~~~g~~k~RINPG--N 105 (361)
T COG0821 42 IKALERAGCDIVRVTV---PDMEAAEALKEIKQRLNVPLVADIHFDY-----------RLALEAAECGVDKVRINPG--N 105 (361)
T ss_pred HHHHHHcCCCEEEEec---CCHHHHHHHHHHHHhCCCCEEEEeeccH-----------HHHHHhhhcCcceEEECCc--c
Confidence 4445568888886433 2335677888888877655566665531 1222233467766654322 2
Q ss_pred CcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCEEE
Q psy6858 177 LYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYV 256 (592)
Q Consensus 177 ~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~i 256 (592)
. -..+.+.++++.|++.|.++.+-.-.+++.....+++ | . ..|+.+- +...+-++++.+.|.+-.+
T Consensus 106 i--g~~~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~ky---~--~------pt~ealv-eSAl~~a~~~e~l~f~~i~ 171 (361)
T COG0821 106 I--GFKDRVREVVEAAKDKGIPIRIGVNAGSLEKRLLEKY---G--G------PTPEALV-ESALEHAELLEELGFDDIK 171 (361)
T ss_pred c--CcHHHHHHHHHHHHHcCCCEEEecccCchhHHHHHHh---c--C------CCHHHHH-HHHHHHHHHHHHCCCCcEE
Confidence 1 3556799999999999999999988887666655554 2 1 1455443 4555566788888887555
Q ss_pred EecccHHHHHHHHHHHHHHHhcCCceeeeeecccceeecCCCCCC
Q psy6858 257 VHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIP 301 (592)
Q Consensus 257 ~hv~s~~a~~~i~~ar~~~~~~G~~~~v~~e~~~~~l~~d~~~~~ 301 (592)
.-+-..+....++..|.. .+-. -++.||+.+.....
T Consensus 172 iS~K~Sdv~~~v~aYr~l--A~~~-------dyPLHLGvTEAG~~ 207 (361)
T COG0821 172 VSVKASDVQLMVAAYRLL--AKRC-------DYPLHLGVTEAGMG 207 (361)
T ss_pred EEEEcCCHHHHHHHHHHH--HHhc-------CCCcccceecccCc
Confidence 555555555666555432 0011 14777777765543
No 182
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=47.26 E-value=2.2e+02 Score=29.11 Aligned_cols=110 Identities=10% Similarity=-0.013 Sum_probs=59.4
Q ss_pred HHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHc---CCeEEEecCc-hhhhHHHHHHHHHcCCCCCCC--ccCCCcHH
Q psy6858 161 EKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNL---GAIAMVHAEN-GEIIDKNTQKLLAAGIKGPEG--HQLSRPEE 234 (592)
Q Consensus 161 ~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~---g~~~~vHae~-~~~i~~~~~~~~~~G~~~p~~--~~~s~p~~ 234 (592)
.+.|++++-+.-+....+.++.+|-.++++.+.+. ..++.+|... .....+..+.+.+.|.++.-- ..+..+.
T Consensus 36 ~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~~t~~ai~~a~~a~~~Gadav~~~pP~y~~~s- 114 (296)
T TIGR03249 36 LGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGGNTSDAIEIARLAEKAGADGYLLLPPYLINGE- 114 (296)
T ss_pred HhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCccHHHHHHHHHHHHHhCCCEEEECCCCCCCCC-
Confidence 34688877655444445678888888877765553 3567777542 111223445566667544111 0112222
Q ss_pred HHHHHHHHHHHHhcccCCCEEEEeccc-HHHHHHHHHHH
Q psy6858 235 VEAEAVTRACTIANQVDCPLYVVHIMS-KAAGDAMAYKR 272 (592)
Q Consensus 235 ~e~eav~~~i~la~~~~~pl~i~hv~s-~~a~~~i~~ar 272 (592)
+.+.+..-.+++...++|+.+.+... .-..+.+.++.
T Consensus 115 -~~~i~~~f~~v~~a~~~pvilYn~~g~~l~~~~~~~La 152 (296)
T TIGR03249 115 -QEGLYAHVEAVCESTDLGVIVYQRDNAVLNADTLERLA 152 (296)
T ss_pred -HHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHH
Confidence 22344455566777789998887332 22344555443
No 183
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=46.52 E-value=99 Score=32.56 Aligned_cols=84 Identities=14% Similarity=0.230 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHHHHHHcCCeEEEe------cCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccC-
Q psy6858 179 MLSDGELYDAFSAIKNLGAIAMVH------AENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVD- 251 (592)
Q Consensus 179 ~~~~~~l~~~~~~a~~~g~~~~vH------ae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~- 251 (592)
..+.++|.+.++.|+++|..+.+- ...-..+.+...++.+.|++... .+.| .++.++++.+
T Consensus 45 nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDavi---v~Dp---------g~i~l~~e~~p 112 (347)
T COG0826 45 NFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVELGVDAVI---VADP---------GLIMLARERGP 112 (347)
T ss_pred cCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHcCCCEEE---EcCH---------HHHHHHHHhCC
Confidence 478889999999999999865443 23333345677888888887632 2222 2455666555
Q ss_pred -CCEEEEecccHHHHHHHHHHHHH
Q psy6858 252 -CPLYVVHIMSKAAGDAMAYKRKE 274 (592)
Q Consensus 252 -~pl~i~hv~s~~a~~~i~~ar~~ 274 (592)
.|+|+.+.++....+.++..++.
T Consensus 113 ~l~ih~S~q~~v~N~~~~~f~~~~ 136 (347)
T COG0826 113 DLPIHVSTQANVTNAETAKFWKEL 136 (347)
T ss_pred CCcEEEeeeEecCCHHHHHHHHHc
Confidence 88887776655545555554444
No 184
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=46.51 E-value=3e+02 Score=27.15 Aligned_cols=33 Identities=30% Similarity=0.405 Sum_probs=23.9
Q ss_pred ccccCcCcccccCCCCChhhHHHHHHHHHcCCeeEEe
Q psy6858 73 GIDPHTHFELELMGATSVDDFYHGTKAAVAGGTTTII 109 (592)
Q Consensus 73 ~ID~HtH~~~~~~~~~~~d~~~~~~~~ala~GtTti~ 109 (592)
-+|.|+|.... .+..+..+. ++.|...|...+.
T Consensus 2 ~~D~H~HT~~s-dg~~~~~e~---~~~A~~~g~~~~~ 34 (237)
T COG1387 2 KIDLHTHTVFS-DGEATPEEM---VEAAIELGLEYIA 34 (237)
T ss_pred CcccccCcccc-cCCCCHHHH---HHHHHHcCCeEEE
Confidence 47999998777 555555554 7778888888764
No 185
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=46.42 E-value=4.9e+02 Score=29.56 Aligned_cols=125 Identities=18% Similarity=0.139 Sum_probs=69.6
Q ss_pred HHHHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccc-cccCCChHHHHHHHHHHHHcCCcEEEEEE
Q psy6858 94 YHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHV-GITWWSDQVQQEMAELCEKHGVNSFKTFM 172 (592)
Q Consensus 94 ~~~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lv~~~Gv~~~k~~~ 172 (592)
..-.+.|++.|+..++=+...+....+..+.+..+.... .+...+.. ..+..+.+...++.+.+.+.|+..+.+-
T Consensus 94 ~~~v~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~---~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad~I~i~- 169 (582)
T TIGR01108 94 ERFVKKAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGA---HAQGTISYTTSPVHTLETYLDLAEELLEMGVDSICIK- 169 (582)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCC---EEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEEC-
Confidence 334677888999987644333322233444443333321 22222111 1333455555555555556788765432
Q ss_pred eeCCCcCCCHHHHHHHHHHHHH-cCCeEEEecCchhh-hHHHHHHHHHcCCCCC
Q psy6858 173 AYKGLYMLSDGELYDAFSAIKN-LGAIAMVHAENGEI-IDKNTQKLLAAGIKGP 224 (592)
Q Consensus 173 ~~~~~~~~~~~~l~~~~~~a~~-~g~~~~vHae~~~~-i~~~~~~~~~~G~~~p 224 (592)
. ....+++.+++++++..++ .++++.+|+.|..- .....-..++.|++..
T Consensus 170 D--t~G~~~P~~v~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~laAveaGa~~v 221 (582)
T TIGR01108 170 D--MAGILTPKAAYELVSALKKRFGLPVHLHSHATTGMAEMALLKAIEAGADGI 221 (582)
T ss_pred C--CCCCcCHHHHHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCEE
Confidence 1 2234789999999988876 47889999876432 2234455667776543
No 186
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=46.21 E-value=98 Score=30.11 Aligned_cols=42 Identities=21% Similarity=0.170 Sum_probs=32.6
Q ss_pred HHHHHHHHHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCe
Q psy6858 154 QEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAI 198 (592)
Q Consensus 154 ~~~~~lv~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~ 198 (592)
+..-.++++.|..++|.| .++++ -..+|++.+.+.|.++|+.
T Consensus 138 etAiaml~dmG~~SiKff-PM~Gl--~~leE~~avA~aca~~g~~ 179 (236)
T TIGR03581 138 ETAIAMLKDMGGSSVKFF-PMGGL--KHLEEYAAVAKACAKHGFY 179 (236)
T ss_pred HHHHHHHHHcCCCeeeEe-ecCCc--ccHHHHHHHHHHHHHcCCc
Confidence 344456778899999966 45554 3788999999999999986
No 187
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=45.97 E-value=2.2e+02 Score=29.04 Aligned_cols=96 Identities=13% Similarity=0.075 Sum_probs=54.7
Q ss_pred cCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHc---CCeEEEecC--chhhhHHHHHHHHHcCCCCCCC--ccCCCcHHH
Q psy6858 163 HGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNL---GAIAMVHAE--NGEIIDKNTQKLLAAGIKGPEG--HQLSRPEEV 235 (592)
Q Consensus 163 ~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~---g~~~~vHae--~~~~i~~~~~~~~~~G~~~p~~--~~~s~p~~~ 235 (592)
.|++++-+.-.......++.+|-.++++.+.+. .+++.++.. +.....+..+.+.+.|.++.-- ..+..+.+
T Consensus 37 ~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~- 115 (293)
T PRK04147 37 QGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVTPFYYPFSF- 115 (293)
T ss_pred CCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCH-
Confidence 688777654433344567888877777665543 255666653 2333344556666777654221 11122222
Q ss_pred HHHHHHHHHHHhcccCCCEEEEecc
Q psy6858 236 EAEAVTRACTIANQVDCPLYVVHIM 260 (592)
Q Consensus 236 e~eav~~~i~la~~~~~pl~i~hv~ 260 (592)
.+.+....++++..+.|+.+.+..
T Consensus 116 -~~l~~~f~~va~a~~lPv~iYn~P 139 (293)
T PRK04147 116 -EEICDYYREIIDSADNPMIVYNIP 139 (293)
T ss_pred -HHHHHHHHHHHHhCCCCEEEEeCc
Confidence 234445556777788999998865
No 188
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=45.31 E-value=5.2e+02 Score=31.98 Aligned_cols=133 Identities=13% Similarity=0.020 Sum_probs=76.1
Q ss_pred ChhhH-HHHHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhcc-Cceeeeec---cccccCCChHHHHHHHHHHHHc
Q psy6858 89 SVDDF-YHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADE-KVCCDYAL---HVGITWWSDQVQQEMAELCEKH 163 (592)
Q Consensus 89 ~~d~~-~~~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~lv~~~ 163 (592)
.+|++ +.-.+.+.+.|+..++-|-.-+.-..+..+.+..++.... .+++.|.- ...-+.++.+...++.+.+.+.
T Consensus 622 ypd~vv~~f~~~~~~~GidifrifD~lN~~~n~~~~~~~~~~~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~~ 701 (1143)
T TIGR01235 622 YPDNVVKYFVKQAAQGGIDIFRVFDSLNWVENMRVGMDAVAEAGKVVEAAICYTGDILDPARPKYDLKYYTNLAVELEKA 701 (1143)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECccCcCHHHHHHHHHHHHHcCCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHHc
Confidence 34443 3456778899999998664444334455555555443321 11222221 1122345555555555555567
Q ss_pred CCcEEEEEEeeCCCcCCCHHHHHHHHHHHHH-cCCeEEEecCchhh-hHHHHHHHHHcCCCCC
Q psy6858 164 GVNSFKTFMAYKGLYMLSDGELYDAFSAIKN-LGAIAMVHAENGEI-IDKNTQKLLAAGIKGP 224 (592)
Q Consensus 164 Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~-~g~~~~vHae~~~~-i~~~~~~~~~~G~~~p 224 (592)
|+..+.+- . -...+++...+++++..++ .++++.+|+.+..- ........++.|++..
T Consensus 702 Gad~I~ik-D--t~Gll~P~~~~~Lv~~lk~~~~~pi~~H~Hdt~Gla~an~laA~eaGad~v 761 (1143)
T TIGR01235 702 GAHILGIK-D--MAGLLKPAAAKLLIKALREKTDLPIHFHTHDTSGIAVASMLAAVEAGVDVV 761 (1143)
T ss_pred CCCEEEEC-C--CcCCcCHHHHHHHHHHHHHhcCCeEEEEECCCCCcHHHHHHHHHHhCCCEE
Confidence 88765321 1 2235789999999988876 48999999876432 2333455667786543
No 189
>PRK03892 ribonuclease P protein component 3; Provisional
Probab=44.93 E-value=3e+02 Score=26.70 Aligned_cols=77 Identities=16% Similarity=0.074 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhccCceeeeeccccccCCChHHHHHHHHHHHHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeE
Q psy6858 120 LIKTYESWRQKADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIA 199 (592)
Q Consensus 120 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~ 199 (592)
..++|+...+|-+. .....-+........+...++.+++-.+.|+..+++.. -++.++...+..- ..-.+
T Consensus 16 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~l~~~yg~~gv~i~~-------~np~~l~~~V~k~--~~~vv 85 (216)
T PRK03892 16 SEEAYELAKEWFDE-VVFTKKLVLEDSPDFGSLKEELKELKKEYGKVAILLVT-------PKPSLIREVKQRF--LNYLI 85 (216)
T ss_pred cHHHHHHHHHHhhh-eEEEEEEeccCCCChhhhHHHHHHHHHhcCcceEEEec-------CCHHHHHHHHHhc--cceEE
Confidence 35778887777765 33344443333333345677888888888988776542 3667788877666 46678
Q ss_pred EEecCch
Q psy6858 200 MVHAENG 206 (592)
Q Consensus 200 ~vHae~~ 206 (592)
.||..+.
T Consensus 86 ~V~GGd~ 92 (216)
T PRK03892 86 YVQGGDL 92 (216)
T ss_pred EEECCcH
Confidence 8887653
No 190
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=44.45 E-value=3.8e+02 Score=30.55 Aligned_cols=123 Identities=14% Similarity=0.079 Sum_probs=68.7
Q ss_pred HHHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhcc-CceeeeeccccccCCChHHHHHHHHHHHHcCCcEEEEEEe
Q psy6858 95 HGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADE-KVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMA 173 (592)
Q Consensus 95 ~~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~Gv~~~k~~~~ 173 (592)
.-.+.|++.|+..++=+...+....+..+.+..++.... ..++.|.. .+.++.+..-++.+.+.+.|+..+.+- .
T Consensus 100 ~~v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~---~p~~t~~~~~~~a~~l~~~Gad~I~i~-D 175 (592)
T PRK09282 100 KFVEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGTISYTT---SPVHTIEKYVELAKELEEMGCDSICIK-D 175 (592)
T ss_pred HHHHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEEEEEecc---CCCCCHHHHHHHHHHHHHcCCCEEEEC-C
Confidence 346778889999886553333223344444444333211 11122222 244555555444444455688865432 1
Q ss_pred eCCCcCCCHHHHHHHHHHHHH-cCCeEEEecCchhh-hHHHHHHHHHcCCCC
Q psy6858 174 YKGLYMLSDGELYDAFSAIKN-LGAIAMVHAENGEI-IDKNTQKLLAAGIKG 223 (592)
Q Consensus 174 ~~~~~~~~~~~l~~~~~~a~~-~g~~~~vHae~~~~-i~~~~~~~~~~G~~~ 223 (592)
....+++.+++++++..++ .++++.+|+.|..- ........++.|++.
T Consensus 176 --t~G~~~P~~~~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~laAv~aGad~ 225 (592)
T PRK09282 176 --MAGLLTPYAAYELVKALKEEVDLPVQLHSHCTSGLAPMTYLKAVEAGVDI 225 (592)
T ss_pred --cCCCcCHHHHHHHHHHHHHhCCCeEEEEEcCCCCcHHHHHHHHHHhCCCE
Confidence 2235789999999988876 47889999876432 233445566777654
No 191
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=44.00 E-value=5.4e+02 Score=29.33 Aligned_cols=160 Identities=20% Similarity=0.245 Sum_probs=95.6
Q ss_pred CCChhhHHHHHHHHHcCCeeEEecc-------ccCCCCccHHHHHHHHHHHhccCceeeeecc----ccccCCChHHHHH
Q psy6858 87 ATSVDDFYHGTKAAVAGGTTTIIDF-------ALPRKGESLIKTYESWRQKADEKVCCDYALH----VGITWWSDQVQQE 155 (592)
Q Consensus 87 ~~~~d~~~~~~~~ala~GtTti~d~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 155 (592)
.++.++...-+...-+.|+.++--. ..+..+++..+.++.+++... +......+. ++.....+++.+.
T Consensus 23 r~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~-~~~lqml~Rg~n~vg~~~ypddvv~~ 101 (593)
T PRK14040 23 RLRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMP-NTPQQMLLRGQNLLGYRHYADDVVER 101 (593)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCC-CCeEEEEecCcceeccccCcHHHHHH
Confidence 5677788777777777898887321 233345666777777777654 222222111 2334445566666
Q ss_pred HHHHHHHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEE---e---c-CchhhhHHHHHHHHHcCCCCCC---
Q psy6858 156 MAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMV---H---A-ENGEIIDKNTQKLLAAGIKGPE--- 225 (592)
Q Consensus 156 ~~~lv~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~v---H---a-e~~~~i~~~~~~~~~~G~~~p~--- 225 (592)
.-+...+.|+..|++|.... ..+.+...++.++++|..+.+ + + .+.+...+..+.+.+.|.....
T Consensus 102 ~v~~a~~~Gid~~rifd~ln-----d~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Gad~i~i~D 176 (593)
T PRK14040 102 FVERAVKNGMDVFRVFDAMN-----DPRNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMGVDSLCIKD 176 (593)
T ss_pred HHHHHHhcCCCEEEEeeeCC-----cHHHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcCCCEEEECC
Confidence 66666678999999996533 235788999999999986422 1 1 1234455667778888865421
Q ss_pred CccCCCcHHHHHHHHHHHHHHhcccCCCEEE
Q psy6858 226 GHQLSRPEEVEAEAVTRACTIANQVDCPLYV 256 (592)
Q Consensus 226 ~~~~s~p~~~e~eav~~~i~la~~~~~pl~i 256 (592)
---...|.++. +.+.+. -+..++|+++
T Consensus 177 t~G~l~P~~~~-~lv~~l---k~~~~~pi~~ 203 (593)
T PRK14040 177 MAGLLKPYAAY-ELVSRI---KKRVDVPLHL 203 (593)
T ss_pred CCCCcCHHHHH-HHHHHH---HHhcCCeEEE
Confidence 22345566654 333332 2344678775
No 192
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=43.74 E-value=2.5e+02 Score=28.77 Aligned_cols=109 Identities=13% Similarity=0.050 Sum_probs=58.8
Q ss_pred HcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHc---CCeEEEecCc-hhhhHHHHHHHHHcCCCCCCC--ccCCCcHHH
Q psy6858 162 KHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNL---GAIAMVHAEN-GEIIDKNTQKLLAAGIKGPEG--HQLSRPEEV 235 (592)
Q Consensus 162 ~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~---g~~~~vHae~-~~~i~~~~~~~~~~G~~~p~~--~~~s~p~~~ 235 (592)
+.|+.++-+.-+..-...++.+|-.++++.+.+. ..++.++... .....+..+.+.+.|..+..- ..+..+.+
T Consensus 39 ~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~t~~~i~~~~~a~~~Gadav~~~pP~y~~~~~- 117 (303)
T PRK03620 39 PYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGGGTAQAIEYAQAAERAGADGILLLPPYLTEAPQ- 117 (303)
T ss_pred HcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHHHHHhCCCEEEECCCCCCCCCH-
Confidence 4688777654443344567888877777765442 3556666532 222333455566667554211 01223322
Q ss_pred HHHHHHHHHHHhcccCCCEEEEeccc-HHHHHHHHHHH
Q psy6858 236 EAEAVTRACTIANQVDCPLYVVHIMS-KAAGDAMAYKR 272 (592)
Q Consensus 236 e~eav~~~i~la~~~~~pl~i~hv~s-~~a~~~i~~ar 272 (592)
.+.+..-..+++..+.|+.+.+... .-..+.+.++.
T Consensus 118 -~~i~~~f~~va~~~~lpi~lYn~~g~~l~~~~l~~L~ 154 (303)
T PRK03620 118 -EGLAAHVEAVCKSTDLGVIVYNRDNAVLTADTLARLA 154 (303)
T ss_pred -HHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHH
Confidence 2334445556777889999888542 22345555443
No 193
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=43.66 E-value=2.6e+02 Score=28.57 Aligned_cols=110 Identities=15% Similarity=0.051 Sum_probs=60.7
Q ss_pred HHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHH---cCCeEEEecCc--hhhhHHHHHHHHHcCCCCCCC--ccCCCcH
Q psy6858 161 EKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKN---LGAIAMVHAEN--GEIIDKNTQKLLAAGIKGPEG--HQLSRPE 233 (592)
Q Consensus 161 ~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~---~g~~~~vHae~--~~~i~~~~~~~~~~G~~~p~~--~~~s~p~ 233 (592)
.+.|+.++-+.-+......++.+|-.++++.+.+ -..++.+|... .....+..+...+.|..+.-- ..+..|.
T Consensus 31 ~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP~y~~~~ 110 (294)
T TIGR02313 31 IEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVPYYNKPN 110 (294)
T ss_pred HHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCccCCCCC
Confidence 3468877655443334456788887777765443 23567777532 222334456666777654221 1122333
Q ss_pred HHHHHHHHHHHHHhccc-CCCEEEEecccH----HHHHHHHHHH
Q psy6858 234 EVEAEAVTRACTIANQV-DCPLYVVHIMSK----AAGDAMAYKR 272 (592)
Q Consensus 234 ~~e~eav~~~i~la~~~-~~pl~i~hv~s~----~a~~~i~~ar 272 (592)
+ .+.+..-..+++.. +.|+.+.+.... -..+.+.++.
T Consensus 111 ~--~~l~~~f~~ia~a~~~lpv~iYn~P~~tg~~l~~~~l~~L~ 152 (294)
T TIGR02313 111 Q--EALYDHFAEVADAVPDFPIIIYNIPGRAAQEIAPKTMARLR 152 (294)
T ss_pred H--HHHHHHHHHHHHhccCCCEEEEeCchhcCcCCCHHHHHHHH
Confidence 3 24444555677778 899999876532 2345555554
No 194
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=43.40 E-value=2.8e+02 Score=27.89 Aligned_cols=57 Identities=21% Similarity=0.215 Sum_probs=37.5
Q ss_pred CCceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHHHcC
Q psy6858 333 NALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFN 402 (592)
Q Consensus 333 G~~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~lg 402 (592)
|.+..+|.-..+|..... .+++.+ .+....+.++....+++.+-.-+.|..++.+|.
T Consensus 189 g~p~l~G~Sn~Sfglp~r-----------~~in~~--fl~~a~~~Gl~~aI~np~~~~~~~~~~~~~~l~ 245 (261)
T PRK07535 189 KVHTTCGLSNISFGLPNR-----------KLINRA--FLVMAMGAGMDSAILDPLDRDLMGAIAAAEALL 245 (261)
T ss_pred CCCEEEEeCCCccCCcch-----------HHHHHH--HHHHHHHcCCCEEeeCCCCHHHHHHHHHHHHHh
Confidence 889999987766654211 112222 234445667777888888888888888888763
No 195
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=42.52 E-value=2.8e+02 Score=28.31 Aligned_cols=97 Identities=14% Similarity=-0.011 Sum_probs=50.4
Q ss_pred HcC-CcEEEEEEeeCCCcCCCHHHHHHHHHHHHHc---CCeEEEecC--chhhhHHHHHHHHHcCCCCCCC--ccCCCcH
Q psy6858 162 KHG-VNSFKTFMAYKGLYMLSDGELYDAFSAIKNL---GAIAMVHAE--NGEIIDKNTQKLLAAGIKGPEG--HQLSRPE 233 (592)
Q Consensus 162 ~~G-v~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~---g~~~~vHae--~~~~i~~~~~~~~~~G~~~p~~--~~~s~p~ 233 (592)
+.| +.++-+.-+......++.+|-.++++.+.+. .+++.+++. +.....+..+...+.|..+.-- ..+..+.
T Consensus 32 ~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~P~y~~~~ 111 (290)
T TIGR00683 32 DKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKFS 111 (290)
T ss_pred hCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCC
Confidence 356 7766544333334567777777766655543 355666643 2222334455556666543211 0111222
Q ss_pred HHHHHHHHHHHHHhccc-CCCEEEEecc
Q psy6858 234 EVEAEAVTRACTIANQV-DCPLYVVHIM 260 (592)
Q Consensus 234 ~~e~eav~~~i~la~~~-~~pl~i~hv~ 260 (592)
+ .+.+..-.+++... +.|+.+.+..
T Consensus 112 ~--~~i~~yf~~v~~~~~~lpv~lYn~P 137 (290)
T TIGR00683 112 F--PEIKHYYDTIIAETGGLNMIVYSIP 137 (290)
T ss_pred H--HHHHHHHHHHHhhCCCCCEEEEeCc
Confidence 2 23444455565555 6899988865
No 196
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=42.44 E-value=2.7e+02 Score=29.67 Aligned_cols=78 Identities=17% Similarity=0.115 Sum_probs=50.7
Q ss_pred ccCCChHHHHHHHHHHHHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHc-CCeEEEecCchhh-hHHHHHHHHHcCCC
Q psy6858 145 ITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNL-GAIAMVHAENGEI-IDKNTQKLLAAGIK 222 (592)
Q Consensus 145 ~~~~~~~~~~~~~~lv~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~-g~~~~vHae~~~~-i~~~~~~~~~~G~~ 222 (592)
.+..+.+...++.+.+.+.|+..+.+.- ....+++.++.+++...++. +.++.+|+.|+.- ........++.|..
T Consensus 139 ~~r~~~~~l~~~~~~~~~~Ga~~I~l~D---T~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~AN~laAv~aGa~ 215 (378)
T PRK11858 139 ASRTDLDFLIEFAKAAEEAGADRVRFCD---TVGILDPFTMYELVKELVEAVDIPIEVHCHNDFGMATANALAGIEAGAK 215 (378)
T ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEec---cCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCcCHHHHHHHHHHHcCCC
Confidence 3445566666666666677988765432 23457899999999887754 7889999887532 22334445677765
Q ss_pred CCC
Q psy6858 223 GPE 225 (592)
Q Consensus 223 ~p~ 225 (592)
..+
T Consensus 216 ~vd 218 (378)
T PRK11858 216 QVH 218 (378)
T ss_pred EEE
Confidence 444
No 197
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=42.29 E-value=3e+02 Score=27.91 Aligned_cols=97 Identities=13% Similarity=0.059 Sum_probs=53.9
Q ss_pred Hc-CCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHc---CCeEEEecC--chhhhHHHHHHHHHcCCCCCC--CccCCCcH
Q psy6858 162 KH-GVNSFKTFMAYKGLYMLSDGELYDAFSAIKNL---GAIAMVHAE--NGEIIDKNTQKLLAAGIKGPE--GHQLSRPE 233 (592)
Q Consensus 162 ~~-Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~---g~~~~vHae--~~~~i~~~~~~~~~~G~~~p~--~~~~s~p~ 233 (592)
+. |++++-+.-.......++.+|-.++++.+.+. .+++.+++. +.....+..+.+.+.|.++.- -..+..+.
T Consensus 32 ~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~~ 111 (288)
T cd00954 32 EKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDAISAITPFYYKFS 111 (288)
T ss_pred hcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCC
Confidence 45 77776554443344567787777776655542 345666653 233334455666677755421 01112233
Q ss_pred HHHHHHHHHHHHHhccc-CCCEEEEecc
Q psy6858 234 EVEAEAVTRACTIANQV-DCPLYVVHIM 260 (592)
Q Consensus 234 ~~e~eav~~~i~la~~~-~~pl~i~hv~ 260 (592)
+ .+.+..-..+++.. ++|+.+.+..
T Consensus 112 ~--~~i~~~~~~v~~a~~~lpi~iYn~P 137 (288)
T cd00954 112 F--EEIKDYYREIIAAAASLPMIIYHIP 137 (288)
T ss_pred H--HHHHHHHHHHHHhcCCCCEEEEeCc
Confidence 2 23444555667778 8999988765
No 198
>PRK08508 biotin synthase; Provisional
Probab=42.24 E-value=3.8e+02 Score=27.10 Aligned_cols=73 Identities=22% Similarity=0.107 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCC
Q psy6858 152 VQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPE 225 (592)
Q Consensus 152 ~~~~~~~lv~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~ 225 (592)
+.+...+. .+.|+..|-+..+-.+......+.+.++++.+++.+..+.+|+.++....+..+++.+.|+..-.
T Consensus 45 I~~~a~~a-~~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~~~ 117 (279)
T PRK08508 45 IVQEAKMA-KANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSYN 117 (279)
T ss_pred HHHHHHHH-HHCCCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCEEc
Confidence 33333333 23577776543222222223445677788888876655667777777777888888888886543
No 199
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=42.14 E-value=3.9e+02 Score=27.24 Aligned_cols=65 Identities=25% Similarity=0.378 Sum_probs=39.1
Q ss_pred HHHHHHHHHHcCCcEEEEEEe-eCCCc----CCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCC
Q psy6858 153 QQEMAELCEKHGVNSFKTFMA-YKGLY----MLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGI 221 (592)
Q Consensus 153 ~~~~~~lv~~~Gv~~~k~~~~-~~~~~----~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~ 221 (592)
.++..+++++-|+..+-+..+ -|+.| .++.+.|.++- +..+.++..|-..+- -.+..+++...|+
T Consensus 155 peea~~Fv~~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~---~~~~iPLVlHGgSG~-~~e~~~~ai~~Gi 224 (282)
T TIGR01858 155 PQEAKEFVEATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIR---EVVDVPLVLHGASDV-PDEDVRRTIELGI 224 (282)
T ss_pred HHHHHHHHHHHCcCEEecccCccccCcCCCCccCHHHHHHHH---HHhCCCeEEecCCCC-CHHHHHHHHHcCC
Confidence 467777888789988876554 24444 44555555553 455899999965542 1333444444444
No 200
>PRK09248 putative hydrolase; Validated
Probab=42.00 E-value=3.5e+02 Score=26.62 Aligned_cols=34 Identities=18% Similarity=0.161 Sum_probs=24.5
Q ss_pred ccccCcCcccccCCCCChhhHHHHHHHHHcCCeeEEe
Q psy6858 73 GIDPHTHFELELMGATSVDDFYHGTKAAVAGGTTTII 109 (592)
Q Consensus 73 ~ID~HtH~~~~~~~~~~~d~~~~~~~~ala~GtTti~ 109 (592)
++|.|+|-..+..+..+.+++ .+.|.+.|.+++.
T Consensus 4 ~~D~H~HT~~s~~~~~~~~e~---v~~A~~~G~~~i~ 37 (246)
T PRK09248 4 PVDTHTHTIASGHAYSTLHEN---AAEAKQKGLKLFA 37 (246)
T ss_pred ceEeCcCCCCCCCCCCCHHHH---HHHHHHCCCCEEE
Confidence 579999987654444444444 8888889999874
No 201
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=41.96 E-value=3.4e+02 Score=28.13 Aligned_cols=80 Identities=15% Similarity=0.194 Sum_probs=41.3
Q ss_pred CCCHHHHHHHHHHHHHcCC--eEEEecC----chhhhH-HHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccC
Q psy6858 179 MLSDGELYDAFSAIKNLGA--IAMVHAE----NGEIID-KNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVD 251 (592)
Q Consensus 179 ~~~~~~l~~~~~~a~~~g~--~~~vHae----~~~~i~-~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~ 251 (592)
..++..|.++++.+++.+. .+.+|.. +...+. +..+.+.+.|..-.-+....+|.++. +.+.+++....+.|
T Consensus 149 ~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~v~i~l~~~h~~el~-~~~~~ai~~L~~~G 227 (321)
T TIGR03822 149 VLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGKTVYVALHANHARELT-AEARAACARLIDAG 227 (321)
T ss_pred cCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCcEEEEecCCChhhcC-HHHHHHHHHHHHcC
Confidence 3456677777777776653 2445542 222222 23344444553211111112344442 55667888888889
Q ss_pred CCEEEEec
Q psy6858 252 CPLYVVHI 259 (592)
Q Consensus 252 ~pl~i~hv 259 (592)
+++.+.-+
T Consensus 228 i~v~~q~v 235 (321)
T TIGR03822 228 IPMVSQSV 235 (321)
T ss_pred CEEEEEee
Confidence 88865443
No 202
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=41.67 E-value=4.3e+02 Score=27.59 Aligned_cols=103 Identities=16% Similarity=0.066 Sum_probs=57.3
Q ss_pred HHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccccccCCChHHHHHHHHHHHHcCCcEEEEEEeeCC
Q psy6858 97 TKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKG 176 (592)
Q Consensus 97 ~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~Gv~~~k~~~~~~~ 176 (592)
.+.|...|+..|+=+..........+.++..++... ..++ ..+.....+++...++.+.+.+.|+..+.+. . .
T Consensus 93 l~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~-~v~~---~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~--D-T 165 (333)
T TIGR03217 93 LKAAYDAGARTVRVATHCTEADVSEQHIGMARELGM-DTVG---FLMMSHMTPPEKLAEQAKLMESYGADCVYIV--D-S 165 (333)
T ss_pred HHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCC-eEEE---EEEcccCCCHHHHHHHHHHHHhcCCCEEEEc--c-C
Confidence 566788898888622211111122223333322211 1111 1122234555655666666666788876432 1 2
Q ss_pred CcCCCHHHHHHHHHHHHHc-C--CeEEEecCch
Q psy6858 177 LYMLSDGELYDAFSAIKNL-G--AIAMVHAENG 206 (592)
Q Consensus 177 ~~~~~~~~l~~~~~~a~~~-g--~~~~vHae~~ 206 (592)
...++++++.+.+..+++. + +++.+|+.|.
T Consensus 166 ~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~Hnn 198 (333)
T TIGR03217 166 AGAMLPDDVRDRVRALKAVLKPETQVGFHAHHN 198 (333)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCceEEEEeCCC
Confidence 3457899999999988864 4 7899998764
No 203
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=41.28 E-value=4.4e+02 Score=27.57 Aligned_cols=119 Identities=15% Similarity=0.028 Sum_probs=64.6
Q ss_pred HHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccccccCCChHHHHHHHHHHHHcCCcEEEEEEeeCC
Q psy6858 97 TKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKG 176 (592)
Q Consensus 97 ~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~Gv~~~k~~~~~~~ 176 (592)
.+.++..|+..|+=+..........+.++..++... ..++ .+ +....++++...++.+.+.+.|+..+.+ .. .
T Consensus 94 l~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~-~v~~--~l-~~a~~~~~e~l~~~a~~~~~~Ga~~i~i--~D-T 166 (337)
T PRK08195 94 LKMAYDAGVRVVRVATHCTEADVSEQHIGLARELGM-DTVG--FL-MMSHMAPPEKLAEQAKLMESYGAQCVYV--VD-S 166 (337)
T ss_pred HHHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCC-eEEE--EE-EeccCCCHHHHHHHHHHHHhCCCCEEEe--CC-C
Confidence 566788899987632211111122333333333221 1111 11 1223455665556666566678886543 22 2
Q ss_pred CcCCCHHHHHHHHHHHHHc---CCeEEEecCchhh-hHHHHHHHHHcCCC
Q psy6858 177 LYMLSDGELYDAFSAIKNL---GAIAMVHAENGEI-IDKNTQKLLAAGIK 222 (592)
Q Consensus 177 ~~~~~~~~l~~~~~~a~~~---g~~~~vHae~~~~-i~~~~~~~~~~G~~ 222 (592)
...++++++++.+...++. +.++.+|+.|.-- ........++.|.+
T Consensus 167 ~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~ 216 (337)
T PRK08195 167 AGALLPEDVRDRVRALRAALKPDTQVGFHGHNNLGLGVANSLAAVEAGAT 216 (337)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHHHHHHhCCC
Confidence 3457899999999998864 5889999876432 22233444556654
No 204
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=41.26 E-value=3.5e+02 Score=27.23 Aligned_cols=103 Identities=15% Similarity=0.086 Sum_probs=57.2
Q ss_pred HHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccccccCCChHHHHHHHHHHHHcCCcEEEEEEeeCC
Q psy6858 97 TKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKG 176 (592)
Q Consensus 97 ~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~Gv~~~k~~~~~~~ 176 (592)
...+...|+..|+=+.....-+...+..+..+.. +..+.+.+.. ...++++...++.+.+.+.|+..+.+-- .
T Consensus 88 l~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~---G~~v~~~~~~-a~~~~~~~~~~~~~~~~~~g~~~i~l~D---T 160 (266)
T cd07944 88 LEPASGSVVDMIRVAFHKHEFDEALPLIKAIKEK---GYEVFFNLMA-ISGYSDEELLELLELVNEIKPDVFYIVD---S 160 (266)
T ss_pred HHHHhcCCcCEEEEecccccHHHHHHHHHHHHHC---CCeEEEEEEe-ecCCCHHHHHHHHHHHHhCCCCEEEEec---C
Confidence 4456677887765332222111222233333222 1222222222 2235566556666555667888764321 3
Q ss_pred CcCCCHHHHHHHHHHHHHc-C--CeEEEecCch
Q psy6858 177 LYMLSDGELYDAFSAIKNL-G--AIAMVHAENG 206 (592)
Q Consensus 177 ~~~~~~~~l~~~~~~a~~~-g--~~~~vHae~~ 206 (592)
...++++++++++...++. + .++.+|+.|.
T Consensus 161 ~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~ 193 (266)
T cd07944 161 FGSMYPEDIKRIISLLRSNLDKDIKLGFHAHNN 193 (266)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCceEEEEeCCC
Confidence 3457999999999998764 5 8899998874
No 205
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=41.13 E-value=4.1e+02 Score=27.15 Aligned_cols=67 Identities=19% Similarity=0.284 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHcCCcEEEEEEe-eCCCc----CCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCC
Q psy6858 152 VQQEMAELCEKHGVNSFKTFMA-YKGLY----MLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIK 222 (592)
Q Consensus 152 ~~~~~~~lv~~~Gv~~~k~~~~-~~~~~----~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~ 222 (592)
..++..+++++-|+..+-+..+ -|+.| .++.+.|.++ .+..+.++..|-..+- -.+..+++.+.|+.
T Consensus 157 ~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I---~~~~~iPLVLHGgSG~-~~e~~~~ai~~Gi~ 228 (285)
T PRK07709 157 DPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQV---RDFTGVPLVLHGGTGI-PTADIEKAISLGTS 228 (285)
T ss_pred CHHHHHHHHHHhCCCEEEEeecccccCcCCCCccCHHHHHHH---HHHHCCCEEEeCCCCC-CHHHHHHHHHcCCe
Confidence 3567777887779998876553 34443 4455545554 4456899999965432 22344555555543
No 206
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=41.03 E-value=1.8e+02 Score=29.39 Aligned_cols=105 Identities=11% Similarity=0.196 Sum_probs=62.1
Q ss_pred CCCChhhHHHHHHHHHcCCeeEEeccccCCCCcc-------HHHHHHHHHHHhccCceeeeeccccccCCChHHHHHHHH
Q psy6858 86 GATSVDDFYHGTKAAVAGGTTTIIDFALPRKGES-------LIKTYESWRQKADEKVCCDYALHVGITWWSDQVQQEMAE 158 (592)
Q Consensus 86 ~~~~~d~~~~~~~~ala~GtTti~d~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (592)
+....+.+..-....+..|+.-++-. +..|+. -.+.++.+.+... + + -.++...+....-++.+
T Consensus 15 g~iD~~~~~~li~~l~~~Gv~Gl~~~--GstGE~~~Lt~eEr~~l~~~~~~~~~-~--v----i~gvg~~~~~~ai~~a~ 85 (279)
T cd00953 15 NKIDKEKFKKHCENLISKGIDYVFVA--GTTGLGPSLSFQEKLELLKAYSDITD-K--V----IFQVGSLNLEESIELAR 85 (279)
T ss_pred CCcCHHHHHHHHHHHHHcCCcEEEEc--ccCCCcccCCHHHHHHHHHHHHHHcC-C--E----EEEeCcCCHHHHHHHHH
Confidence 45677777777888889999999644 444432 1223333433332 2 1 12222333333445556
Q ss_pred HHHHcCCcEEEEEEeeCCCcC-CCHHHHHHHHHHHHHcCCeEEEe
Q psy6858 159 LCEKHGVNSFKTFMAYKGLYM-LSDGELYDAFSAIKNLGAIAMVH 202 (592)
Q Consensus 159 lv~~~Gv~~~k~~~~~~~~~~-~~~~~l~~~~~~a~~~g~~~~vH 202 (592)
.+++.|+..+-+...| .+. .+++++.+-|....+ ++++.+.
T Consensus 86 ~a~~~Gad~v~v~~P~--y~~~~~~~~i~~yf~~v~~-~lpv~iY 127 (279)
T cd00953 86 AAKSFGIYAIASLPPY--YFPGIPEEWLIKYFTDISS-PYPTFIY 127 (279)
T ss_pred HHHHcCCCEEEEeCCc--CCCCCCHHHHHHHHHHHHh-cCCEEEE
Confidence 6667899887655432 122 367888888877777 8888877
No 207
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=39.65 E-value=4.3e+02 Score=27.00 Aligned_cols=66 Identities=26% Similarity=0.340 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHcCCcEEEEEEe-eCCCc----CCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCC
Q psy6858 152 VQQEMAELCEKHGVNSFKTFMA-YKGLY----MLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGI 221 (592)
Q Consensus 152 ~~~~~~~lv~~~Gv~~~k~~~~-~~~~~----~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~ 221 (592)
..++..+++++-|+..+-+..+ -|+.| .++.+.|.++ .+..++++..|-..+- -.+..+++...|+
T Consensus 157 ~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I---~~~~~vPLVLHGgSG~-~~e~~~~ai~~GI 227 (286)
T PRK08610 157 DPKECQELVEKTGIDALAPALGSVHGPYKGEPKLGFKEMEEI---GLSTGLPLVLHGGTGI-PTKDIQKAIPFGT 227 (286)
T ss_pred CHHHHHHHHHHHCCCEEEeeccccccccCCCCCCCHHHHHHH---HHHHCCCEEEeCCCCC-CHHHHHHHHHCCC
Confidence 3567777887779998876553 34444 3445545554 3456899999965432 2233445555554
No 208
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=39.41 E-value=6.3e+02 Score=28.80 Aligned_cols=160 Identities=18% Similarity=0.136 Sum_probs=99.6
Q ss_pred CCChhhHHHHHHHHHcCCeeEEec-------cccCCCCccHHHHHHHHHHHhccCceeeeec----cccccCCChHHHHH
Q psy6858 87 ATSVDDFYHGTKAAVAGGTTTIID-------FALPRKGESLIKTYESWRQKADEKVCCDYAL----HVGITWWSDQVQQE 155 (592)
Q Consensus 87 ~~~~d~~~~~~~~ala~GtTti~d-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 155 (592)
.+..+++...+..+-+.|+.++-- ....-..++..+.++.+++... +......+ -+++....+++.+.
T Consensus 22 r~~t~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~edpwerl~~~r~~~p-nt~lqmL~Rg~N~vGy~~~~d~vv~~ 100 (596)
T PRK14042 22 RMRTEDMLPICNKMDDVGFWAMEVWGGATFDACLRFLKEDPWSRLRQLRQALP-NTQLSMLLRGQNLLGYRNYADDVVRA 100 (596)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEeeCCcccceeecccCCCHHHHHHHHHHhCC-CCceEEEeccccccccccCChHHHHH
Confidence 456677777666666666666632 2222333556667777776653 33333333 45566778888887
Q ss_pred HHHHHHHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEe-------cCchhhhHHHHHHHHHcCCCCCC---
Q psy6858 156 MAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVH-------AENGEIIDKNTQKLLAAGIKGPE--- 225 (592)
Q Consensus 156 ~~~lv~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vH-------ae~~~~i~~~~~~~~~~G~~~p~--- 225 (592)
.-++..+.|+..|++|-+.. .-+.+...++.+++.|..+..- ..+.+...+..+++.+.|+....
T Consensus 101 ~v~~a~~~Gidv~Rifd~ln-----d~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~Gad~I~IkD 175 (596)
T PRK14042 101 FVKLAVNNGVDVFRVFDALN-----DARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLDNFLELGKKLAEMGCDSIAIKD 175 (596)
T ss_pred HHHHHHHcCCCEEEEcccCc-----chHHHHHHHHHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 77777778999999986532 4456888999999999866543 24455566677888888875422
Q ss_pred CccCCCcHHHHHHHHHHHHHHhcccCCCEEE
Q psy6858 226 GHQLSRPEEVEAEAVTRACTIANQVDCPLYV 256 (592)
Q Consensus 226 ~~~~s~p~~~e~eav~~~i~la~~~~~pl~i 256 (592)
---+..|..+. +.+. + +-+..++|+++
T Consensus 176 taG~l~P~~v~-~lv~-a--lk~~~~ipi~~ 202 (596)
T PRK14042 176 MAGLLTPTVTV-ELYA-G--LKQATGLPVHL 202 (596)
T ss_pred cccCCCHHHHH-HHHH-H--HHhhcCCEEEE
Confidence 22345566553 2222 2 22345788776
No 209
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=39.11 E-value=3.5e+02 Score=27.00 Aligned_cols=103 Identities=14% Similarity=0.033 Sum_probs=57.1
Q ss_pred HHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccccccCCChHHHHHHHHHHHHcCCcEEEEEEeeCC
Q psy6858 97 TKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKG 176 (592)
Q Consensus 97 ~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~Gv~~~k~~~~~~~ 176 (592)
...++..|+..+.=+...+......+..+..+... ..+.+.+. ....++++...++.+.+.+.|+..+.+ . ..
T Consensus 91 i~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~G---~~v~~~~~-~~~~~~~~~~~~~~~~~~~~G~d~i~l--~-DT 163 (263)
T cd07943 91 LKMAADLGVDVVRVATHCTEADVSEQHIGAARKLG---MDVVGFLM-MSHMASPEELAEQAKLMESYGADCVYV--T-DS 163 (263)
T ss_pred HHHHHHcCCCEEEEEechhhHHHHHHHHHHHHHCC---CeEEEEEE-eccCCCHHHHHHHHHHHHHcCCCEEEE--c-CC
Confidence 56677788887752221111112222333322222 11222221 233456666666666666678886632 2 23
Q ss_pred CcCCCHHHHHHHHHHHHHc-CC-eEEEecCch
Q psy6858 177 LYMLSDGELYDAFSAIKNL-GA-IAMVHAENG 206 (592)
Q Consensus 177 ~~~~~~~~l~~~~~~a~~~-g~-~~~vHae~~ 206 (592)
...++++++.++++..++. +. ++.+|+.|.
T Consensus 164 ~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~ 195 (263)
T cd07943 164 AGAMLPDDVRERVRALREALDPTPVGFHGHNN 195 (263)
T ss_pred CCCcCHHHHHHHHHHHHHhCCCceEEEEecCC
Confidence 3467899999999988764 55 889998874
No 210
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=38.48 E-value=2.4e+02 Score=29.02 Aligned_cols=105 Identities=15% Similarity=0.112 Sum_probs=62.2
Q ss_pred HHHHHHHHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcC---CeEEEec--CchhhhHHHHHHHHHcCCCCCC--Cc
Q psy6858 155 EMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLG---AIAMVHA--ENGEIIDKNTQKLLAAGIKGPE--GH 227 (592)
Q Consensus 155 ~~~~lv~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g---~~~~vHa--e~~~~i~~~~~~~~~~G~~~p~--~~ 227 (592)
++-+...+.|++++-+.-+-.....++.+|-.++++.+.+.- +++.+++ .+.....+..+...+.|+.+.- -.
T Consensus 29 ~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~P 108 (299)
T COG0329 29 RLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPP 108 (299)
T ss_pred HHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 333333346877765544333445688888888877777652 4466664 2333344556677777766533 22
Q ss_pred cCCCcHHHHHHHHHHHHHHhcccCCCEEEEeccc
Q psy6858 228 QLSRPEEVEAEAVTRACTIANQVDCPLYVVHIMS 261 (592)
Q Consensus 228 ~~s~p~~~e~eav~~~i~la~~~~~pl~i~hv~s 261 (592)
++.+|.+- +....-..++...+.|+.+..+-+
T Consensus 109 yY~k~~~~--gl~~hf~~ia~a~~lPvilYN~P~ 140 (299)
T COG0329 109 YYNKPSQE--GLYAHFKAIAEAVDLPVILYNIPS 140 (299)
T ss_pred CCcCCChH--HHHHHHHHHHHhcCCCEEEEeCcc
Confidence 34444433 444555567777899999888754
No 211
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=38.46 E-value=2e+02 Score=29.08 Aligned_cols=97 Identities=15% Similarity=0.156 Sum_probs=52.7
Q ss_pred HcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHH---cCCeEEEec--CchhhhHHHHHHHHHcCCCCCCC--ccCCCcHH
Q psy6858 162 KHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKN---LGAIAMVHA--ENGEIIDKNTQKLLAAGIKGPEG--HQLSRPEE 234 (592)
Q Consensus 162 ~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~---~g~~~~vHa--e~~~~i~~~~~~~~~~G~~~p~~--~~~s~p~~ 234 (592)
+.|++++-+.-.....+.++.+|-.++++.+.+ -..++.+++ .+.....+..+.+.+.|+.+.-- ..+..+.+
T Consensus 33 ~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P~~~~~s~ 112 (289)
T PF00701_consen 33 EAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIPPYYFKPSQ 112 (289)
T ss_dssp HTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEESTSSSCCH
T ss_pred HcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEeccccccchh
Confidence 458877765443334456788877777666554 235566664 33444445566666777654210 01112222
Q ss_pred HHHHHHHHHHHHhcccCCCEEEEecc
Q psy6858 235 VEAEAVTRACTIANQVDCPLYVVHIM 260 (592)
Q Consensus 235 ~e~eav~~~i~la~~~~~pl~i~hv~ 260 (592)
- +.+.....++...+.|+.+.+..
T Consensus 113 ~--~l~~y~~~ia~~~~~pi~iYn~P 136 (289)
T PF00701_consen 113 E--ELIDYFRAIADATDLPIIIYNNP 136 (289)
T ss_dssp H--HHHHHHHHHHHHSSSEEEEEEBH
T ss_pred h--HHHHHHHHHHhhcCCCEEEEECC
Confidence 2 23344455667789999988864
No 212
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=38.35 E-value=3.7e+02 Score=25.90 Aligned_cols=126 Identities=19% Similarity=0.138 Sum_probs=59.3
Q ss_pred HHHHHHHcCCeeEEeccccCCC-C-ccHHHHHHHHHHHhccCceeeeeccccccCCChHHHHHHHHH---HHHcCCcEEE
Q psy6858 95 HGTKAAVAGGTTTIIDFALPRK-G-ESLIKTYESWRQKADEKVCCDYALHVGITWWSDQVQQEMAEL---CEKHGVNSFK 169 (592)
Q Consensus 95 ~~~~~ala~GtTti~d~~~~~~-~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---v~~~Gv~~~k 169 (592)
..+..|.++|..-|-=...... | ......++...+.......+......+.-.+++...+.|.+- +++.|+.+|-
T Consensus 11 ~~a~~A~~~GAdRiELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~~GadG~V 90 (201)
T PF03932_consen 11 EDALAAEAGGADRIELCSNLEVGGLTPSLGLIRQAREAVDIPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLRELGADGFV 90 (201)
T ss_dssp HHHHHHHHTT-SEEEEEBTGGGT-B---HHHHHHHHHHTTSEEEEE--SSSS-S---HHHHHHHHHHHHHHHHTT-SEEE
T ss_pred HHHHHHHHcCCCEEEECCCccCCCcCcCHHHHHHHHhhcCCceEEEECCCCCCccCCHHHHHHHHHHHHHHHHcCCCeeE
Confidence 3466777888888742211111 1 122344455444443333333333332222445444444443 3457998885
Q ss_pred EEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchhh--hHHHHHHHHHcCCCC
Q psy6858 170 TFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEI--IDKNTQKLLAAGIKG 223 (592)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~--i~~~~~~~~~~G~~~ 223 (592)
+.. ......++.+.+.++++.|+ ++.++.|-.-+.. ..+....+.+.|++.
T Consensus 91 fG~-L~~dg~iD~~~~~~Li~~a~--~~~~tFHRAfD~~~d~~~al~~L~~lG~~r 143 (201)
T PF03932_consen 91 FGA-LTEDGEIDEEALEELIEAAG--GMPVTFHRAFDEVPDPEEALEQLIELGFDR 143 (201)
T ss_dssp E---BETTSSB-HHHHHHHHHHHT--TSEEEE-GGGGGSSTHHHHHHHHHHHT-SE
T ss_pred EEe-ECCCCCcCHHHHHHHHHhcC--CCeEEEeCcHHHhCCHHHHHHHHHhcCCCE
Confidence 432 22334578888999998887 8999999422111 233456666667654
No 213
>PRK12999 pyruvate carboxylase; Reviewed
Probab=37.86 E-value=6.2e+02 Score=31.38 Aligned_cols=183 Identities=11% Similarity=-0.002 Sum_probs=0.0
Q ss_pred ChhhHHHH-HHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeec----cccccCCChHHHHHHHHHHHHc
Q psy6858 89 SVDDFYHG-TKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYAL----HVGITWWSDQVQQEMAELCEKH 163 (592)
Q Consensus 89 ~~d~~~~~-~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~lv~~~ 163 (592)
.+++.... .+.+.+.|+..++-|-..+.-..+..+++..+......-.+.... ...-+.++.+..-++.+.+.+.
T Consensus 624 yp~~v~~~~i~~a~~~Gid~~rifd~lnd~~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~ 703 (1146)
T PRK12999 624 YPDNVVRAFVREAAAAGIDVFRIFDSLNWVENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVDLAKELEKA 703 (1146)
T ss_pred CCchHHHHHHHHHHHcCCCEEEEeccCChHHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHc
Q ss_pred CCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHc-CCeEEEecCc-hhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHH
Q psy6858 164 GVNSFKTFMAYKGLYMLSDGELYDAFSAIKNL-GAIAMVHAEN-GEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVT 241 (592)
Q Consensus 164 Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~-g~~~~vHae~-~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~ 241 (592)
|+..+.+ -.....+++.+.++++...++. ++++.+|+.| ........-..++.|+.....-..+--+..-.-+++
T Consensus 704 Ga~~i~i---kDt~G~l~P~~~~~lv~~lk~~~~ipi~~H~Hnt~Gla~an~laA~~aGad~vD~av~glg~~tgn~~le 780 (1146)
T PRK12999 704 GAHILAI---KDMAGLLKPAAAYELVSALKEEVDLPIHLHTHDTSGNGLATYLAAAEAGVDIVDVAVASMSGLTSQPSLN 780 (1146)
T ss_pred CCCEEEE---CCccCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCchHHHHHHHHHHhCCCEEEecchhhcCCcCCHHHH
Q ss_pred HHHHHhcccCCCEEEEecccHHHHHHHHHHHHH
Q psy6858 242 RACTIANQVDCPLYVVHIMSKAAGDAMAYKRKE 274 (592)
Q Consensus 242 ~~i~la~~~~~pl~i~hv~s~~a~~~i~~ar~~ 274 (592)
..+...+..+...-+-.-.-.+..+.++..|+.
T Consensus 781 ~vv~~L~~~~~~t~idl~~l~~~s~~~~~~r~~ 813 (1146)
T PRK12999 781 SIVAALEGTERDTGLDLDAIRKLSPYWEAVRPY 813 (1146)
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHhH
No 214
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=37.56 E-value=5.5e+02 Score=27.58 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=16.1
Q ss_pred HHHHHHHHcCCeeEEeccccC
Q psy6858 94 YHGTKAAVAGGTTTIIDFALP 114 (592)
Q Consensus 94 ~~~~~~ala~GtTti~d~~~~ 114 (592)
..-.+.|+..|.-||.|...+
T Consensus 80 ~~K~~~A~~~GADtiMDLStG 100 (423)
T TIGR00190 80 VEKALIAIKYGADTVMDLSTG 100 (423)
T ss_pred HHHHHHHHHcCCCeEeeccCC
Confidence 345678899999999998543
No 215
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=37.53 E-value=25 Score=32.25 Aligned_cols=33 Identities=30% Similarity=0.460 Sum_probs=22.6
Q ss_pred cccCcCcccc-cCCCCChhhHHHHHHHHHcCCeeEEe
Q psy6858 74 IDPHTHFELE-LMGATSVDDFYHGTKAAVAGGTTTII 109 (592)
Q Consensus 74 ID~HtH~~~~-~~~~~~~d~~~~~~~~ala~GtTti~ 109 (592)
||.|+|...+ ..+..+.+++ .+.|.+.|.+++.
T Consensus 1 iDlH~HT~~s~~dg~~~~~e~---v~~A~~~Gl~~i~ 34 (175)
T PF02811_consen 1 IDLHVHTKYSILDGKDSPEEY---VEQAKEKGLDAIA 34 (175)
T ss_dssp EEEEB--TTTSSTSSSSHHHH---HHHHHHTTESEEE
T ss_pred CCccccccCcchhhcCCHHHH---HHHHHHcCCCEEE
Confidence 7999999776 4445555555 6888899999873
No 216
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=37.44 E-value=4.2e+02 Score=27.98 Aligned_cols=78 Identities=19% Similarity=0.208 Sum_probs=49.3
Q ss_pred ccCCChHHHHHHHHHHHHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHH-cCCeEEEecCchhh-hHHHHHHHHHcCCC
Q psy6858 145 ITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKN-LGAIAMVHAENGEI-IDKNTQKLLAAGIK 222 (592)
Q Consensus 145 ~~~~~~~~~~~~~~lv~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~-~g~~~~vHae~~~~-i~~~~~~~~~~G~~ 222 (592)
.+..+.+...++.+.+.+.|+..+.+- .....+++.++.++++..++ .+.++.+|+.|+.- ........+..|+.
T Consensus 136 ~~r~~~~~l~~~~~~~~~~Ga~~i~l~---DT~G~~~P~~v~~lv~~l~~~~~v~l~~H~HNd~GlA~ANalaA~~aGa~ 212 (365)
T TIGR02660 136 ASRADPDFLVELAEVAAEAGADRFRFA---DTVGILDPFSTYELVRALRQAVDLPLEMHAHNDLGMATANTLAAVRAGAT 212 (365)
T ss_pred CCCCCHHHHHHHHHHHHHcCcCEEEEc---ccCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhCCC
Confidence 344555666666666666788765432 12345789999999988775 47889999887532 22233445577765
Q ss_pred CCC
Q psy6858 223 GPE 225 (592)
Q Consensus 223 ~p~ 225 (592)
..+
T Consensus 213 ~vd 215 (365)
T TIGR02660 213 HVN 215 (365)
T ss_pred EEE
Confidence 444
No 217
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=36.71 E-value=6.8e+02 Score=28.43 Aligned_cols=160 Identities=16% Similarity=0.176 Sum_probs=94.0
Q ss_pred CCChhhHHHHHHHHHcCCeeEEecc-------ccCCCCccHHHHHHHHHHHhccCceeee---ec-cccccCCChHHHHH
Q psy6858 87 ATSVDDFYHGTKAAVAGGTTTIIDF-------ALPRKGESLIKTYESWRQKADEKVCCDY---AL-HVGITWWSDQVQQE 155 (592)
Q Consensus 87 ~~~~d~~~~~~~~ala~GtTti~d~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~ 155 (592)
.++.++...-+....+.|+..|--. ...-.+++..+.++.++.... +..... +. ..+.....+++.++
T Consensus 17 ~~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~-~~~l~~L~Rg~N~~G~~~ypddvv~~ 95 (582)
T TIGR01108 17 RMRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALP-NTPLQMLLRGQNLLGYRHYADDVVER 95 (582)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCC-CCEEEEEEccccccccccCchhhHHH
Confidence 4667777777777778898887321 112223445566666655433 222111 11 12344456666665
Q ss_pred HHHHHHHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEec-------CchhhhHHHHHHHHHcCCCCCC---
Q psy6858 156 MAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHA-------ENGEIIDKNTQKLLAAGIKGPE--- 225 (592)
Q Consensus 156 ~~~lv~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHa-------e~~~~i~~~~~~~~~~G~~~p~--- 225 (592)
.-+...+.|+..|++|.+..+ .+.+...++.+++.|..+.+-. .+.+...+..+++.+.|.....
T Consensus 96 ~v~~a~~~Gvd~irif~~lnd-----~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad~I~i~D 170 (582)
T TIGR01108 96 FVKKAVENGMDVFRIFDALND-----PRNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLEMGVDSICIKD 170 (582)
T ss_pred HHHHHHHCCCCEEEEEEecCc-----HHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECC
Confidence 555555679999999976433 3578899999999998777541 1235555667788888865422
Q ss_pred CccCCCcHHHHHHHHHHHHHHhcccCCCEEE
Q psy6858 226 GHQLSRPEEVEAEAVTRACTIANQVDCPLYV 256 (592)
Q Consensus 226 ~~~~s~p~~~e~eav~~~i~la~~~~~pl~i 256 (592)
.--...|..+. +.+.+ +-+..+.|+++
T Consensus 171 t~G~~~P~~v~-~lv~~---lk~~~~~pi~~ 197 (582)
T TIGR01108 171 MAGILTPKAAY-ELVSA---LKKRFGLPVHL 197 (582)
T ss_pred CCCCcCHHHHH-HHHHH---HHHhCCCceEE
Confidence 22345676653 22222 22344677764
No 218
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=35.72 E-value=7.1e+02 Score=28.35 Aligned_cols=179 Identities=18% Similarity=0.120 Sum_probs=100.7
Q ss_pred CCChhhHHHHHHHHHcCCeeEEeccccC--------CCCccHHHHHHHHHHHhccCceeeeec----cccccCCChHHHH
Q psy6858 87 ATSVDDFYHGTKAAVAGGTTTIIDFALP--------RKGESLIKTYESWRQKADEKVCCDYAL----HVGITWWSDQVQQ 154 (592)
Q Consensus 87 ~~~~d~~~~~~~~ala~GtTti~d~~~~--------~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 154 (592)
.+..++...-+....+.|+..+- +..+ -..++..+.+..+++... +..+..-+ -.+.....+++.+
T Consensus 22 r~~t~d~l~ia~~l~~~G~~~iE-~~ggatfd~~~rfl~edp~e~l~~l~~~~~-~~~l~~l~Rg~N~~gy~~ypd~vv~ 99 (592)
T PRK09282 22 RMRTEDMLPIAEKLDKVGFWSLE-VWGGATFDVCIRYLNEDPWERLRKLKKALP-NTPLQMLLRGQNLVGYRHYPDDVVE 99 (592)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEE-ecCCccchhhcccCCccHHHHHHHHHHhCC-CCEEEEEeccccccccccccchhhH
Confidence 45667777777777778988873 2211 123455666666665533 22211111 1234445666666
Q ss_pred HHHHHHHHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEec---C----chhhhHHHHHHHHHcCCCCCC--
Q psy6858 155 EMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHA---E----NGEIIDKNTQKLLAAGIKGPE-- 225 (592)
Q Consensus 155 ~~~~lv~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHa---e----~~~~i~~~~~~~~~~G~~~p~-- 225 (592)
..-+...+.|+..|++|.+..+ ...+...++.+++.|..+.+-. . +.+......+++.+.|.....
T Consensus 100 ~~v~~A~~~Gvd~irif~~lnd-----~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~Gad~I~i~ 174 (592)
T PRK09282 100 KFVEKAAENGIDIFRIFDALND-----VRNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELEEMGCDSICIK 174 (592)
T ss_pred HHHHHHHHCCCCEEEEEEecCh-----HHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 6666666789999999976432 3578889999999998766332 1 224555667778888865422
Q ss_pred -CccCCCcHHHHHHHHHHHHHHhcccCCCEEEE-ecccHHHHHHHHHHHHHHHhcCC
Q psy6858 226 -GHQLSRPEEVEAEAVTRACTIANQVDCPLYVV-HIMSKAAGDAMAYKRKELMKKGK 280 (592)
Q Consensus 226 -~~~~s~p~~~e~eav~~~i~la~~~~~pl~i~-hv~s~~a~~~i~~ar~~~~~~G~ 280 (592)
---...|.++. +.+... -+..+.|++++ |-...-+..-.-.|-+. |+
T Consensus 175 Dt~G~~~P~~~~-~lv~~l---k~~~~~pi~~H~Hnt~Gla~An~laAv~a----Ga 223 (592)
T PRK09282 175 DMAGLLTPYAAY-ELVKAL---KEEVDLPVQLHSHCTSGLAPMTYLKAVEA----GV 223 (592)
T ss_pred CcCCCcCHHHHH-HHHHHH---HHhCCCeEEEEEcCCCCcHHHHHHHHHHh----CC
Confidence 12245566653 222222 23346777652 33333333333333344 77
No 219
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=34.32 E-value=5.2e+02 Score=26.38 Aligned_cols=65 Identities=25% Similarity=0.432 Sum_probs=38.4
Q ss_pred HHHHHHHHHHcCCcEEEEEEe-eCCCc----CCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCC
Q psy6858 153 QQEMAELCEKHGVNSFKTFMA-YKGLY----MLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGI 221 (592)
Q Consensus 153 ~~~~~~lv~~~Gv~~~k~~~~-~~~~~----~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~ 221 (592)
.++..+++++-|+..+-+..+ -||.| .++.+-|.++ .+..+.++..|-..+- -.+..+++.+.|+
T Consensus 157 peeA~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I---~~~~~iPLVlHGgSG~-~~e~~~kai~~Gi 226 (284)
T PRK12737 157 PDAAAEFVERTGIDSLAVAIGTAHGLYKGEPKLDFERLAEI---REKVSIPLVLHGASGV-PDEDVKKAISLGI 226 (284)
T ss_pred HHHHHHHHHHhCCCEEeeccCccccccCCCCcCCHHHHHHH---HHHhCCCEEEeCCCCC-CHHHHHHHHHCCC
Confidence 467777887779988876553 24444 3444444444 3445899999965542 2333444444444
No 220
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=33.81 E-value=5e+02 Score=26.04 Aligned_cols=54 Identities=15% Similarity=0.189 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHc-CCeEEEecCch
Q psy6858 150 DQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNL-GAIAMVHAENG 206 (592)
Q Consensus 150 ~~~~~~~~~lv~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~-g~~~~vHae~~ 206 (592)
.+...++.+.+.+.|+..+.+ . .....+++.++++++...++. +.++.+|+.|.
T Consensus 140 ~~~l~~~~~~~~~~g~~~i~l--~-Dt~G~~~P~~v~~~~~~~~~~~~~~i~~H~Hn~ 194 (262)
T cd07948 140 LVDLLRVYRAVDKLGVNRVGI--A-DTVGIATPRQVYELVRTLRGVVSCDIEFHGHND 194 (262)
T ss_pred HHHHHHHHHHHHHcCCCEEEE--C-CcCCCCCHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 344455555556678886532 2 123457899999999887764 68889998874
No 221
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=33.24 E-value=4.4e+02 Score=26.90 Aligned_cols=67 Identities=10% Similarity=0.134 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHcCCcEEEEEEe-eCCCcC---CCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCC
Q psy6858 152 VQQEMAELCEKHGVNSFKTFMA-YKGLYM---LSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIK 222 (592)
Q Consensus 152 ~~~~~~~lv~~~Gv~~~k~~~~-~~~~~~---~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~ 222 (592)
..++..+++++-|+..+.+..+ -|+.|. ++.+-|.++ .+..++++..|-..+- -.+..+++...|+.
T Consensus 154 ~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I---~~~~~vPLVlHGgSG~-~~e~~~~ai~~Gi~ 224 (283)
T PRK07998 154 EPEKVKDFVERTGCDMLAVSIGNVHGLEDIPRIDIPLLKRI---AEVSPVPLVIHGGSGI-PPEILRSFVNYKVA 224 (283)
T ss_pred CHHHHHHHHHHhCcCeeehhccccccCCCCCCcCHHHHHHH---HhhCCCCEEEeCCCCC-CHHHHHHHHHcCCc
Confidence 3567788888789998886553 345543 333333333 4456899999965432 22334555555554
No 222
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=32.67 E-value=7.9e+02 Score=27.99 Aligned_cols=124 Identities=19% Similarity=0.151 Sum_probs=69.4
Q ss_pred HHHHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhcc-CceeeeeccccccCCChHHHHHHHHHHHHcCCcEEEEEE
Q psy6858 94 YHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADE-KVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFM 172 (592)
Q Consensus 94 ~~~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~Gv~~~k~~~ 172 (592)
..-.+.+.+.|+..++-+...+.-..+..+++..+..... .+.+.|.. .+..+.+...++.+.+.+.|+..+.+-
T Consensus 100 ~~~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i~yt~---~p~~~~~~~~~~a~~l~~~Gad~i~i~- 175 (593)
T PRK14040 100 ERFVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGTLSYTT---SPVHTLQTWVDLAKQLEDMGVDSLCIK- 175 (593)
T ss_pred HHHHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEEEEee---CCccCHHHHHHHHHHHHHcCCCEEEEC-
Confidence 3346678899999987553222222333444444433221 01122221 223344555555555556788766432
Q ss_pred eeCCCcCCCHHHHHHHHHHHHH-cCCeEEEecCchhh-hHHHHHHHHHcCCCC
Q psy6858 173 AYKGLYMLSDGELYDAFSAIKN-LGAIAMVHAENGEI-IDKNTQKLLAAGIKG 223 (592)
Q Consensus 173 ~~~~~~~~~~~~l~~~~~~a~~-~g~~~~vHae~~~~-i~~~~~~~~~~G~~~ 223 (592)
. ....+++.+++++++..++ .++++.+|+.|..- ........++.|++.
T Consensus 176 D--t~G~l~P~~~~~lv~~lk~~~~~pi~~H~Hnt~GlA~An~laAieAGa~~ 226 (593)
T PRK14040 176 D--MAGLLKPYAAYELVSRIKKRVDVPLHLHCHATTGLSTATLLKAIEAGIDG 226 (593)
T ss_pred C--CCCCcCHHHHHHHHHHHHHhcCCeEEEEECCCCchHHHHHHHHHHcCCCE
Confidence 1 2235789999999988876 57889999876432 233445566778654
No 223
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=32.53 E-value=2.6e+02 Score=27.45 Aligned_cols=104 Identities=13% Similarity=0.093 Sum_probs=60.4
Q ss_pred hHHHHHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccccccCCChHH-----HHHHHHHHHHcCCc
Q psy6858 92 DFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVGITWWSDQV-----QQEMAELCEKHGVN 166 (592)
Q Consensus 92 ~~~~~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~lv~~~Gv~ 166 (592)
++....+.++..|+..|. +.|. ....+.........+.++-.++.. ...+.+.. ..+.++.++ .|..
T Consensus 20 ~~~~~~~~a~~~~~~av~--v~p~----~~~~~~~~~~~~~~~~~~vi~fp~-g~~~~~~k~~~~~~~~ve~A~~-~GAd 91 (236)
T PF01791_consen 20 DIKKLCREAIEYGFDAVC--VTPG----YVKPAAELLAGSGVKVGLVIGFPF-GTSTTEPKGYDQIVAEVEEAIR-LGAD 91 (236)
T ss_dssp HHHHHHHHHHHHTSSEEE--EEGG----GHHHHHHHSTTSTSEEEEEESTTT-SSSTHHHHTCEEEHHHHHHHHH-TT-S
T ss_pred hHHHHHHHHHHhCCCEEE--ECHH----HHHHHHHHhhccccccceEEEeCC-CCCccccccccchHHHHHHHHH-cCCc
Confidence 778888889998999885 2232 222222211111112333333322 22233333 567777765 5999
Q ss_pred EEEEEEee---CC-CcCCCHHHHHHHHHHHHHcCCeEEEec
Q psy6858 167 SFKTFMAY---KG-LYMLSDGELYDAFSAIKNLGAIAMVHA 203 (592)
Q Consensus 167 ~~k~~~~~---~~-~~~~~~~~l~~~~~~a~~~g~~~~vHa 203 (592)
.+++.+.+ .. .+.-..+++.++.+.|++.++++.+..
T Consensus 92 ~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~ 132 (236)
T PF01791_consen 92 EVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEP 132 (236)
T ss_dssp EEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEE
T ss_pred eeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 99988876 21 122233578889999999999999885
No 224
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=32.43 E-value=5.4e+02 Score=25.99 Aligned_cols=107 Identities=20% Similarity=0.149 Sum_probs=61.1
Q ss_pred ccCCChHHHHHHHHHHHHcCC----cEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcC
Q psy6858 145 ITWWSDQVQQEMAELCEKHGV----NSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAG 220 (592)
Q Consensus 145 ~~~~~~~~~~~~~~lv~~~Gv----~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G 220 (592)
+.-|+.........+.++ |. ..+..+++..+....+.+.|...++.+.+ +...+++..... ........+.+|
T Consensus 144 ~ev~d~~~l~~~~~l~~~-G~l~~p~~~~~vlG~~~g~~~~~~~l~~~l~~l~~-~~~w~v~~~g~~-~~~~~~~Ai~~G 220 (272)
T PF05853_consen 144 IEVFDPGHLRNARRLIEK-GLLPGPLLVNFVLGVPGGMPATPENLLAMLDMLPE-GAPWSVCGIGRN-QWPLLAAAIAMG 220 (272)
T ss_dssp EEESSHHHHHHHHHHHHT-TSS-SSEEEEEEES-TTS--S-HHHHHHHHHHHHH-TEEEEEEE-GGG-HHHHHHHHHHTT
T ss_pred EEEEcHHHHHHHHHHHHC-CCCCCCeEEEEcccCCCCCCCCHHHHHHHHHhcCC-CCcEEEEccchh-hHHHHHHHHHcC
Confidence 334555556666666543 43 35556665555556677888888887777 888899987643 233455566666
Q ss_pred CC---CCCCccC---CCcHHHHHHHHHHHHHHhcccCCCE
Q psy6858 221 IK---GPEGHQL---SRPEEVEAEAVTRACTIANQVDCPL 254 (592)
Q Consensus 221 ~~---~p~~~~~---s~p~~~e~eav~~~i~la~~~~~pl 254 (592)
.. |-|...+ ..+-....+.+.++.++++..|.++
T Consensus 221 ghvRVGlED~~~~~~G~~a~sNaelV~~a~~ia~~~grev 260 (272)
T PF05853_consen 221 GHVRVGLEDNLYLPDGELAPSNAELVERAVRIARELGREV 260 (272)
T ss_dssp -EEEESTTT-SEEETTEE-S-HHHHHHHHHHHHHHTT-EB
T ss_pred CceEEecCccccCCCCCCCcCHHHHHHHHHHHHHHcCCCC
Confidence 43 2222211 1223456788999999999999864
No 225
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=32.41 E-value=9e+02 Score=30.02 Aligned_cols=149 Identities=17% Similarity=0.192 Sum_probs=88.2
Q ss_pred ccHHHHHHHHHHHhccCceeeee----ccccccCCChHHHHHHHHHHHHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHH
Q psy6858 118 ESLIKTYESWRQKADEKVCCDYA----LHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIK 193 (592)
Q Consensus 118 ~~~~~a~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~lv~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~ 193 (592)
++..+-++.+++... +...... --++.+...+++.+..-+...+.|+.-|++|-+.+ .-+.|...++.++
T Consensus 589 EdPwerl~~~r~~~p-n~~~qml~Rg~n~vgy~~ypd~vv~~f~~~~~~~GidifrifD~lN-----~~~n~~~~~~~~~ 662 (1143)
T TIGR01235 589 EDPWERLEDLRKGVP-NILFQMLLRGANGVGYTNYPDNVVKYFVKQAAQGGIDIFRVFDSLN-----WVENMRVGMDAVA 662 (1143)
T ss_pred CCHHHHHHHHHHhCC-CCceeeeeccccccCccCCCHHHHHHHHHHHHHcCCCEEEECccCc-----CHHHHHHHHHHHH
Confidence 455566677766653 2222221 23456777888888888887778999999986533 4567899999999
Q ss_pred HcCCeEEEecC-------------chhhhHHHHHHHHHcCCCCCC---CccCCCcHHHHHHHHHHHHHHhcccCCCEEEE
Q psy6858 194 NLGAIAMVHAE-------------NGEIIDKNTQKLLAAGIKGPE---GHQLSRPEEVEAEAVTRACTIANQVDCPLYVV 257 (592)
Q Consensus 194 ~~g~~~~vHae-------------~~~~i~~~~~~~~~~G~~~p~---~~~~s~p~~~e~eav~~~i~la~~~~~pl~i~ 257 (592)
+.|..+..-.. +-+...+..+++.+.|+.... ---+..|..+. +.+ ++ +.+..+.|++++
T Consensus 663 ~~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~~Gad~I~ikDt~Gll~P~~~~-~Lv-~~--lk~~~~~pi~~H 738 (1143)
T TIGR01235 663 EAGKVVEAAICYTGDILDPARPKYDLKYYTNLAVELEKAGAHILGIKDMAGLLKPAAAK-LLI-KA--LREKTDLPIHFH 738 (1143)
T ss_pred HcCCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCCcCHHHHH-HHH-HH--HHHhcCCeEEEE
Confidence 99986644321 123344567778888865321 22244566553 222 22 233457888762
Q ss_pred -ecccHHHHHHHHHHHHHHHhcCC
Q psy6858 258 -HIMSKAAGDAMAYKRKELMKKGK 280 (592)
Q Consensus 258 -hv~s~~a~~~i~~ar~~~~~~G~ 280 (592)
|-...-+....-.|-+. |+
T Consensus 739 ~Hdt~Gla~an~laA~ea----Ga 758 (1143)
T TIGR01235 739 THDTSGIAVASMLAAVEA----GV 758 (1143)
T ss_pred ECCCCCcHHHHHHHHHHh----CC
Confidence 33344444443444444 87
No 226
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=32.39 E-value=5.1e+02 Score=26.48 Aligned_cols=111 Identities=12% Similarity=0.139 Sum_probs=65.2
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEEEeeCCCcCCCHHHHHHHH-HHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCC
Q psy6858 148 WSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAF-SAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEG 226 (592)
Q Consensus 148 ~~~~~~~~~~~lv~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~-~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~ 226 (592)
++.+..+.+-+...+.+..-+-.+ +.....-...+.+..++ ..|++..+++.+|.-.+.- .+...+.++.|+++.--
T Consensus 26 ~n~e~~~avi~AAee~~sPvIlq~-s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLDHg~~-~e~i~~ai~~GFtSVM~ 103 (286)
T PRK12738 26 HNAETIQAILEVCSEMRSPVILAG-TPGTFKHIALEEIYALCSAYSTTYNMPLALHLDHHES-LDDIRRKVHAGVRSAMI 103 (286)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEc-CcchhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCC-HHHHHHHHHcCCCeEee
Confidence 444555555555555454433221 11111113344444443 4577789999999765432 44677788999877543
Q ss_pred ccCCCcHHHHHHHHHHHHHHhcccCCCEE--EEecc
Q psy6858 227 HQLSRPEEVEAEAVTRACTIANQVDCPLY--VVHIM 260 (592)
Q Consensus 227 ~~~s~p~~~e~eav~~~i~la~~~~~pl~--i~hv~ 260 (592)
-.-..|-+-..+.+.+..++|+..|+.+. +-|+.
T Consensus 104 DgS~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~ig 139 (286)
T PRK12738 104 DGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLG 139 (286)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeC
Confidence 33334566666778888888888887765 55554
No 227
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=32.27 E-value=4.9e+02 Score=27.16 Aligned_cols=37 Identities=8% Similarity=0.111 Sum_probs=19.7
Q ss_pred HHHHHHHHHhcccCCCEEEEecccHH----HHHHHHHHHHH
Q psy6858 238 EAVTRACTIANQVDCPLYVVHIMSKA----AGDAMAYKRKE 274 (592)
Q Consensus 238 eav~~~i~la~~~~~pl~i~hv~s~~----a~~~i~~ar~~ 274 (592)
+.+.+++...++.++++.+.-+.+.. -.+.++.+++.
T Consensus 132 ~~v~~~i~~l~~~g~~v~v~~vv~~~N~~~l~~~~~~~~~l 172 (358)
T TIGR02109 132 EQKLAMARAVKAAGLPLTLNFVIHRHNIDQIPEIIELAIEL 172 (358)
T ss_pred HHHHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHHHHHc
Confidence 34445666777778877654444333 33344444444
No 228
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=31.67 E-value=4.6e+02 Score=26.65 Aligned_cols=66 Identities=21% Similarity=0.370 Sum_probs=38.2
Q ss_pred HHHHHHHHHHcCCcEEEEEEe-eCCCc-----CCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCC
Q psy6858 153 QQEMAELCEKHGVNSFKTFMA-YKGLY-----MLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIK 222 (592)
Q Consensus 153 ~~~~~~lv~~~Gv~~~k~~~~-~~~~~-----~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~ 222 (592)
.++..+++++-|+..+-+..+ -|+.| .++.+-|.++ .+..+.++..|-..+- -.+..+++.+.|+.
T Consensus 150 pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i---~~~~~vPLVlHGgSG~-~~e~~~~ai~~Gi~ 221 (276)
T cd00947 150 PEEAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEI---AERVNVPLVLHGGSGI-PDEQIRKAIKLGVC 221 (276)
T ss_pred HHHHHHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHH---HHHhCCCEEEeCCCCC-CHHHHHHHHHcCCe
Confidence 567777887778888776553 34444 3444444444 4445899999955432 22334445555543
No 229
>PRK06801 hypothetical protein; Provisional
Probab=31.59 E-value=5.3e+02 Score=26.36 Aligned_cols=105 Identities=9% Similarity=0.017 Sum_probs=58.2
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEEEeeCCCcCCCHHHHHHH-HHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCC
Q psy6858 148 WSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDA-FSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEG 226 (592)
Q Consensus 148 ~~~~~~~~~~~lv~~~Gv~~~k~~~~~~~~~~~~~~~l~~~-~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~ 226 (592)
++.+....+-+...+.+..-+-.. +.....-...+.+... ...|++..+++.+|.-.+.. .+...+.++.|+++.--
T Consensus 26 ~n~e~~~avi~AAe~~~~PvIl~~-~~~~~~~~~~~~~~~~~~~~a~~~~vpV~lHlDH~~~-~e~i~~Ai~~GftSVm~ 103 (286)
T PRK06801 26 LDSHFLRALFAAAKQERSPFIINI-AEVHFKYISLESLVEAVKFEAARHDIPVVLNLDHGLH-FEAVVRALRLGFSSVMF 103 (286)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEe-CcchhhcCCHHHHHHHHHHHHHHCCCCEEEECCCCCC-HHHHHHHHHhCCcEEEE
Confidence 344445555555555454433222 1111111344445444 45566789999999866543 35577788888876432
Q ss_pred ccCCCcHHHHHHHHHHHHHHhcccCCCE
Q psy6858 227 HQLSRPEEVEAEAVTRACTIANQVDCPL 254 (592)
Q Consensus 227 ~~~s~p~~~e~eav~~~i~la~~~~~pl 254 (592)
-.-..|.+-..+...+...+++..|+.+
T Consensus 104 D~S~l~~eeNi~~t~~v~~~a~~~gv~V 131 (286)
T PRK06801 104 DGSTLEYEENVRQTREVVKMCHAVGVSV 131 (286)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 2222343444456677778888888766
No 230
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=31.51 E-value=5.3e+02 Score=26.32 Aligned_cols=111 Identities=11% Similarity=0.059 Sum_probs=65.1
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEEEeeCCCcCCCHHHHHHHHH-HHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCC
Q psy6858 148 WSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFS-AIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEG 226 (592)
Q Consensus 148 ~~~~~~~~~~~lv~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~-~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~ 226 (592)
++.+..+.+-+...+.+..-+-.. +.....-...+.+...+. .|++..+++.+|.-.+. -.+...+.++.|+++.--
T Consensus 24 ~n~e~~~avi~AAee~~sPvIlq~-s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLDHg~-~~e~i~~ai~~GFtSVM~ 101 (282)
T TIGR01858 24 HNLETIQAVVETAAEMRSPVILAG-TPGTFKHAGTEYIVALCSAASTTYNMPLALHLDHHE-SLDDIRQKVHAGVRSAMI 101 (282)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEe-CccHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCCC-CHHHHHHHHHcCCCEEee
Confidence 344444555555555454433221 111111123444555544 56678899999975443 245678888999876543
Q ss_pred ccCCCcHHHHHHHHHHHHHHhcccCCCEE--EEecc
Q psy6858 227 HQLSRPEEVEAEAVTRACTIANQVDCPLY--VVHIM 260 (592)
Q Consensus 227 ~~~s~p~~~e~eav~~~i~la~~~~~pl~--i~hv~ 260 (592)
-.-..|-+-..+.+.+..++|+..|+.+. +-|+.
T Consensus 102 DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vg 137 (282)
T TIGR01858 102 DGSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLG 137 (282)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecC
Confidence 33334556666778888899988888765 55554
No 231
>PRK15447 putative protease; Provisional
Probab=31.50 E-value=4e+02 Score=27.31 Aligned_cols=55 Identities=9% Similarity=0.159 Sum_probs=38.1
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEEEEEeeCCC---cCCCHHHHHHHHHHHHHcCCeEEEe
Q psy6858 146 TWWSDQVQQEMAELCEKHGVNSFKTFMAYKGL---YMLSDGELYDAFSAIKNLGAIAMVH 202 (592)
Q Consensus 146 ~~~~~~~~~~~~~lv~~~Gv~~~k~~~~~~~~---~~~~~~~l~~~~~~a~~~g~~~~vH 202 (592)
-+|.....+.+-..+.+.|+..+-+ +.... ...+.+++.++++.+++.|..+.+-
T Consensus 10 ~~~p~~~~~~~~~~~~~~gaDaVY~--g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva 67 (301)
T PRK15447 10 YYWPKETVRDFYQRAADSPVDIVYL--GETVCSKRRELKVGDWLELAERLAAAGKEVVLS 67 (301)
T ss_pred cCCCCCCHHHHHHHHHcCCCCEEEE--CCccCCCccCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 3566666777777776678886543 32211 1378899999999999999877664
No 232
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=31.42 E-value=5.4e+02 Score=27.54 Aligned_cols=54 Identities=20% Similarity=0.257 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchh
Q psy6858 152 VQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGE 207 (592)
Q Consensus 152 ~~~~~~~lv~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~ 207 (592)
.-+.+.++++..|....-+ ........+.+++.+.++.-.+..+.+.+|+|...
T Consensus 91 FG~R~~~ia~~~g~~v~~~--~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETST 144 (383)
T COG0075 91 FGERFAEIAERYGAEVVVL--EVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETST 144 (383)
T ss_pred HHHHHHHHHHHhCCceEEE--eCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCcc
Confidence 3556777777778765433 22333567899999999866667789999999854
No 233
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=30.55 E-value=5.8e+02 Score=25.75 Aligned_cols=96 Identities=13% Similarity=-0.018 Sum_probs=49.9
Q ss_pred HHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecC--chhhhHHHHHHHHHcCCCCCCC--ccCCC-cHHH
Q psy6858 161 EKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAE--NGEIIDKNTQKLLAAGIKGPEG--HQLSR-PEEV 235 (592)
Q Consensus 161 ~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae--~~~~i~~~~~~~~~~G~~~p~~--~~~s~-p~~~ 235 (592)
.+.|++++-+.-+......++.+|-.++++.+.+....+.++.. +.....+..+.+.+.|..+--- ..+.. +.+-
T Consensus 30 ~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~~vi~gvg~~~~~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~ 109 (279)
T cd00953 30 ISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITDKVIFQVGSLNLEESIELARAAKSFGIYAIASLPPYYFPGIPEE 109 (279)
T ss_pred HHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcCCEEEEeCcCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCCHH
Confidence 34677776554443445567888777777665554334555542 3333334455666666543221 01111 1121
Q ss_pred HHHHHHHHHHHhcccCCCEEEEecc
Q psy6858 236 EAEAVTRACTIANQVDCPLYVVHIM 260 (592)
Q Consensus 236 e~eav~~~i~la~~~~~pl~i~hv~ 260 (592)
+.+..-..+++ ++|+.+.+..
T Consensus 110 --~i~~yf~~v~~--~lpv~iYn~P 130 (279)
T cd00953 110 --WLIKYFTDISS--PYPTFIYNYP 130 (279)
T ss_pred --HHHHHHHHHHh--cCCEEEEeCc
Confidence 22233444555 7899988764
No 234
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=30.41 E-value=5.5e+02 Score=26.23 Aligned_cols=110 Identities=12% Similarity=0.015 Sum_probs=64.0
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEEEeeCCCcCCCHHHHHH-HHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCc
Q psy6858 149 SDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYD-AFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGH 227 (592)
Q Consensus 149 ~~~~~~~~~~lv~~~Gv~~~k~~~~~~~~~~~~~~~l~~-~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~ 227 (592)
+.+....+-+...+.+..-+-.. +.....-+..+.+.. +...|++..+++.+|.-.+.- .+...+.++.|+++----
T Consensus 27 n~e~~~avi~AAee~~sPvIiq~-~~~~~~~~g~~~~~~~~~~~a~~~~VPValHLDH~~~-~e~i~~ai~~GftSVMiD 104 (284)
T PRK12737 27 NLETLQVVVETAAELRSPVILAG-TPGTFSYAGTDYIVAIAEVAARKYNIPLALHLDHHED-LDDIKKKVRAGIRSVMID 104 (284)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEc-CccHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCC-HHHHHHHHHcCCCeEEec
Confidence 44444444454544454333221 111111123344555 445677889999999755431 456788889998864432
Q ss_pred cCCCcHHHHHHHHHHHHHHhcccCCCEE--EEecc
Q psy6858 228 QLSRPEEVEAEAVTRACTIANQVDCPLY--VVHIM 260 (592)
Q Consensus 228 ~~s~p~~~e~eav~~~i~la~~~~~pl~--i~hv~ 260 (592)
.-..|-+-..+.+.+.+++|+..|+.+. +-|+.
T Consensus 105 gS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~ig 139 (284)
T PRK12737 105 GSHLSFEENIAIVKEVVEFCHRYDASVEAELGRLG 139 (284)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecc
Confidence 2234566666778888888888887765 55553
No 235
>PRK08444 hypothetical protein; Provisional
Probab=29.45 E-value=6.7e+02 Score=26.43 Aligned_cols=120 Identities=16% Similarity=0.095 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEec-----------CchhhhHHHHHHHHHcC
Q psy6858 152 VQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHA-----------ENGEIIDKNTQKLLAAG 220 (592)
Q Consensus 152 ~~~~~~~lv~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHa-----------e~~~~i~~~~~~~~~~G 220 (592)
+.+...+.. +.|+..|-+..+.+ .....+.+.++++..++.--.+.+|+ ..+....+...+|.+.|
T Consensus 85 I~~~a~~a~-~~G~~ei~iv~G~~--p~~~~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~~LkeAG 161 (353)
T PRK08444 85 ILEIVKNSV-KRGIKEVHIVSAHN--PNYGYEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLEDMLEYG 161 (353)
T ss_pred HHHHHHHHH-HCCCCEEEEeccCC--CCCCHHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 444444433 46998887765533 22356778888888887543577887 33444556678899999
Q ss_pred CCCCCCc--c--------CCCcHHHHHHHHHHHHHHhcccCCCE----EEEecccH-HHHHHHHHHHHH
Q psy6858 221 IKGPEGH--Q--------LSRPEEVEAEAVTRACTIANQVDCPL----YVVHIMSK-AAGDAMAYKRKE 274 (592)
Q Consensus 221 ~~~p~~~--~--------~s~p~~~e~eav~~~i~la~~~~~pl----~i~hv~s~-~a~~~i~~ar~~ 274 (592)
+..-.|. . ...|.....+.....++.|++.|.+. -+-|.-+. +.++.+..+|+.
T Consensus 162 l~~~~g~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~~~Gi~~~sg~l~G~gEt~edrv~hl~~Lr~L 230 (353)
T PRK08444 162 VDSMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKYWHKKGKMSNATMLFGHIENREHRIDHMLRLRDL 230 (353)
T ss_pred cccCCCCCchhcCHHHHhhhCCCCCCHHHHHHHHHHHHHcCCCccceeEEecCCCHHHHHHHHHHHHHh
Confidence 8654431 1 11233333344445556677777654 35555443 445555555543
No 236
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=28.68 E-value=6.3e+02 Score=25.83 Aligned_cols=65 Identities=23% Similarity=0.377 Sum_probs=38.8
Q ss_pred HHHHHHHHHHcCCcEEEEEEe-eCCCcC-----CCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCC
Q psy6858 153 QQEMAELCEKHGVNSFKTFMA-YKGLYM-----LSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGI 221 (592)
Q Consensus 153 ~~~~~~lv~~~Gv~~~k~~~~-~~~~~~-----~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~ 221 (592)
.++..+++++-|+..+-+..+ -|+.|. ++.+.|.++ .+..+.++..|-..+- -.+..+++...|+
T Consensus 160 peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I---~~~v~vPLVlHGgSG~-~~e~~~~ai~~Gi 230 (288)
T TIGR00167 160 PEEAKEFVKLTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEI---QKYVNLPLVLHGGSGI-PDEEIKKAISLGV 230 (288)
T ss_pred HHHHHHHHhccCCcEEeeccCccccccCCCCCccCHHHHHHH---HHHhCCCEEEeCCCCC-CHHHHHHHHHcCC
Confidence 467778887779988877654 345443 344444444 4455899999965542 2233444555554
No 237
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=28.31 E-value=2.7e+02 Score=27.71 Aligned_cols=11 Identities=36% Similarity=0.495 Sum_probs=8.1
Q ss_pred cCCeeEEeccc
Q psy6858 102 AGGTTTIIDFA 112 (592)
Q Consensus 102 a~GtTti~d~~ 112 (592)
..|.|+|+|-.
T Consensus 11 ~~GlT~v~Dkg 21 (244)
T PF02679_consen 11 SRGLTMVIDKG 21 (244)
T ss_dssp SSS-EEEEESS
T ss_pred CCCcEEEecCC
Confidence 36999999875
No 238
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=28.26 E-value=5.6e+02 Score=24.85 Aligned_cols=115 Identities=16% Similarity=0.123 Sum_probs=59.8
Q ss_pred CChhhHHHHHHHHHcCCeeEEeccccCCC-------Ccc---HHHHHHHHHHHhcc-CceeeeeccccccCCChHHHHHH
Q psy6858 88 TSVDDFYHGTKAAVAGGTTTIIDFALPRK-------GES---LIKTYESWRQKADE-KVCCDYALHVGITWWSDQVQQEM 156 (592)
Q Consensus 88 ~~~d~~~~~~~~ala~GtTti~d~~~~~~-------~~~---~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 156 (592)
...+++..+...+...|+..+.-+...+. +.+ ..+.+.+....+.. ...+.+++ ...+..+++...++
T Consensus 64 ~~~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~-~~~~~~~~~~~~~~ 142 (237)
T PF00682_consen 64 ANEEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGC-EDASRTDPEELLEL 142 (237)
T ss_dssp SCHHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEE-TTTGGSSHHHHHHH
T ss_pred ehHHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCc-cccccccHHHHHHH
Confidence 34556666677777788887753322211 011 12222222222221 12222222 12233455555555
Q ss_pred HHHHHHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHc-C-CeEEEecCch
Q psy6858 157 AELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNL-G-AIAMVHAENG 206 (592)
Q Consensus 157 ~~lv~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~-g-~~~~vHae~~ 206 (592)
.+.+.+.|+..+.+- . ....+++.++.++++..++. . ..+.+|+.|.
T Consensus 143 ~~~~~~~g~~~i~l~--D-t~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd 191 (237)
T PF00682_consen 143 AEALAEAGADIIYLA--D-TVGIMTPEDVAELVRALREALPDIPLGFHAHND 191 (237)
T ss_dssp HHHHHHHT-SEEEEE--E-TTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBT
T ss_pred HHHHHHcCCeEEEee--C-ccCCcCHHHHHHHHHHHHHhccCCeEEEEecCC
Confidence 555556688876432 2 23457889999999888864 4 7888898774
No 239
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=28.19 E-value=6e+02 Score=25.21 Aligned_cols=57 Identities=18% Similarity=0.221 Sum_probs=37.8
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHH-cCCeEEEecCch
Q psy6858 147 WWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKN-LGAIAMVHAENG 206 (592)
Q Consensus 147 ~~~~~~~~~~~~lv~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~-~g~~~~vHae~~ 206 (592)
.++++...++.+.+.+.|+..+.+ . .....++++++++++...++ ++.++.+|+.|.
T Consensus 135 ~~~~~~~~~~~~~~~~~G~~~i~l--~-DT~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hn~ 192 (259)
T cd07939 135 RADPDFLIEFAEVAQEAGADRLRF--A-DTVGILDPFTTYELIRRLRAATDLPLEFHAHND 192 (259)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEe--C-CCCCCCCHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 345555555555555678876543 2 12345789999999988775 467889998874
No 240
>PRK06361 hypothetical protein; Provisional
Probab=28.12 E-value=5.3e+02 Score=24.55 Aligned_cols=55 Identities=9% Similarity=-0.007 Sum_probs=37.6
Q ss_pred HHHHhcCCceEEeCCCC-CCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHHHcCC
Q psy6858 327 LTLLNENALQTTGSDNC-TFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNL 403 (592)
Q Consensus 327 ~~~l~~G~~~~~gsD~~-~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~lgl 403 (592)
..+.+.|..++++||.. +.... .+.. ........+++.++++.+.+.||+.++++
T Consensus 155 ~~a~~~gi~vv~~SDaH~~~d~~---------------------~~~~-~~~i~~~~gl~~~~v~~~~~~~~~~~~~~ 210 (212)
T PRK06361 155 RIAREAGAPLVINTDTHAPSDLI---------------------TYEF-ARKVALGAGLTEKELEEALENNPKLLLKR 210 (212)
T ss_pred HHHHHhCCcEEEECCCCCHHHHH---------------------HHHH-HHHHHcCCCCCHHHHHHHHHHhHHHHHHh
Confidence 33445699999999954 21110 1111 12344678899999999999999999875
No 241
>PRK15108 biotin synthase; Provisional
Probab=27.80 E-value=7.3e+02 Score=26.01 Aligned_cols=60 Identities=20% Similarity=0.234 Sum_probs=40.6
Q ss_pred HHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCC
Q psy6858 161 EKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIK 222 (592)
Q Consensus 161 ~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~ 222 (592)
.+.|+..|-...+.........+.+.++++.+++.++.+.++ ++.+..+..+++.+.|++
T Consensus 89 ~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~~~i~v~~s--~G~ls~e~l~~LkeAGld 148 (345)
T PRK15108 89 KAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLETCMT--LGTLSESQAQRLANAGLD 148 (345)
T ss_pred HHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHhCCCEEEEe--CCcCCHHHHHHHHHcCCC
Confidence 346888775433322222345577889999999888766544 555567788889899987
No 242
>KOG2550|consensus
Probab=27.70 E-value=76 Score=33.81 Aligned_cols=68 Identities=16% Similarity=0.132 Sum_probs=40.8
Q ss_pred EecCCCEEeeCccccCcCccc-------------cc--CCCCChhhHHHHHHHHHcCCeeEEeccccCCCCccHHHHHHH
Q psy6858 62 IDAAGSYVIPGGIDPHTHFEL-------------EL--MGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYES 126 (592)
Q Consensus 62 IDa~G~~V~PG~ID~HtH~~~-------------~~--~~~~~~d~~~~~~~~ala~GtTti~d~~~~~~~~~~~~a~~~ 126 (592)
.+-++-+|+|||||--++--. |+ .+..+.-++.-+...|+.+|++.|.-.+.|.. -...+.+
T Consensus 30 LtynDfliLPg~idF~s~eVsL~t~ltr~itl~tPlvsSpMDTVtes~MAiaMAl~ggIg~IHhNctpe~---QA~~v~~ 106 (503)
T KOG2550|consen 30 LTYNDFLILPGFIDFASDEVSLQTKLTRNITLNTPLVSSPMDTVTESEMAIAMALLGGIGFIHHNCTPED---QADMVRR 106 (503)
T ss_pred ccccceeecccccccccccceeehhhhhcccccCceeccCCcccchhHHHHHHHhcCCceeeecCCCHHH---HHHHHHH
Confidence 555677999999999887310 11 12334444555777788899999954443332 2333455
Q ss_pred HHHHhc
Q psy6858 127 WRQKAD 132 (592)
Q Consensus 127 ~~~~~~ 132 (592)
|+....
T Consensus 107 vK~~~~ 112 (503)
T KOG2550|consen 107 VKNYEN 112 (503)
T ss_pred HHHhhc
Confidence 555544
No 243
>PLN02417 dihydrodipicolinate synthase
Probab=27.40 E-value=6.5e+02 Score=25.36 Aligned_cols=96 Identities=9% Similarity=0.025 Sum_probs=51.4
Q ss_pred HcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHc---CCeEEEecC--chhhhHHHHHHHHHcCCCCCCC--ccCCCcHH
Q psy6858 162 KHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNL---GAIAMVHAE--NGEIIDKNTQKLLAAGIKGPEG--HQLSRPEE 234 (592)
Q Consensus 162 ~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~---g~~~~vHae--~~~~i~~~~~~~~~~G~~~p~~--~~~s~p~~ 234 (592)
+.|++++-+.-+......++.+|-.++++.+.+. .+++.++.. +.....+..+...+.|.++.-- ..+.+|.+
T Consensus 33 ~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~P~y~~~~~ 112 (280)
T PLN02417 33 ENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSQ 112 (280)
T ss_pred HcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcCCccCCCCH
Confidence 4688877655444445567888877777665543 356666753 3333444556666777543110 01223333
Q ss_pred HHHHHHHHHHHHhcccCCCEEEEeccc
Q psy6858 235 VEAEAVTRACTIANQVDCPLYVVHIMS 261 (592)
Q Consensus 235 ~e~eav~~~i~la~~~~~pl~i~hv~s 261 (592)
- +.+..-..+++. . |+.+.+...
T Consensus 113 ~--~i~~~f~~va~~-~-pi~lYn~P~ 135 (280)
T PLN02417 113 E--GLIKHFETVLDM-G-PTIIYNVPG 135 (280)
T ss_pred H--HHHHHHHHHHhh-C-CEEEEEChh
Confidence 2 223333344553 3 988887653
No 244
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=27.12 E-value=5.7e+02 Score=24.82 Aligned_cols=98 Identities=8% Similarity=-0.080 Sum_probs=49.3
Q ss_pred CCChhhHHHHHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccccccCCChHHHHHHHHHHHHcCCc
Q psy6858 87 ATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVN 166 (592)
Q Consensus 87 ~~~~d~~~~~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~Gv~ 166 (592)
..+.++...-.++++++|++.+- .. .......+.+++.++....+.-+..|. .+-.+ .++.++.++ .|..
T Consensus 21 ~~~~~~a~~~~~al~~~Gi~~iE-it--~~~~~a~~~i~~l~~~~~~~p~~~vGa---GTV~~---~~~~~~a~~-aGA~ 90 (213)
T PRK06552 21 GESKEEALKISLAVIKGGIKAIE-VT--YTNPFASEVIKELVELYKDDPEVLIGA---GTVLD---AVTARLAIL-AGAQ 90 (213)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEE-EE--CCCccHHHHHHHHHHHcCCCCCeEEee---eeCCC---HHHHHHHHH-cCCC
Confidence 34566777777888888988883 22 222345566666655432110122222 22222 334444433 4664
Q ss_pred EEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCc
Q psy6858 167 SFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAEN 205 (592)
Q Consensus 167 ~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~ 205 (592)
.+ +++..-.++++.|++.++++.--+.+
T Consensus 91 Fi-----------vsP~~~~~v~~~~~~~~i~~iPG~~T 118 (213)
T PRK06552 91 FI-----------VSPSFNRETAKICNLYQIPYLPGCMT 118 (213)
T ss_pred EE-----------ECCCCCHHHHHHHHHcCCCEECCcCC
Confidence 32 12222345666678888776654444
No 245
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=26.89 E-value=6.1e+02 Score=25.91 Aligned_cols=78 Identities=12% Similarity=0.091 Sum_probs=51.4
Q ss_pred HHHHHHHH-HHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCEE--EEe
Q psy6858 182 DGELYDAF-SAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLY--VVH 258 (592)
Q Consensus 182 ~~~l~~~~-~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~--i~h 258 (592)
.+.+...+ ..|++..+++.+|.-.+.- .+...+.++.|+++----.-..|-+-..+.+.+..++|+..|+.+. +-|
T Consensus 59 ~~~~~~~~~~~A~~~~VPV~lHLDHg~~-~e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~ 137 (284)
T PRK09195 59 TEYLLAIVSAAAKQYHHPLALHLDHHEK-FDDIAQKVRSGVRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVEAELGR 137 (284)
T ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCCC-HHHHHHHHHcCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEec
Confidence 34444444 4677789999999755432 4567888899987644222234555556777888888888887664 555
Q ss_pred cc
Q psy6858 259 IM 260 (592)
Q Consensus 259 v~ 260 (592)
+.
T Consensus 138 vg 139 (284)
T PRK09195 138 LG 139 (284)
T ss_pred cc
Confidence 54
No 246
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=26.16 E-value=5e+02 Score=24.04 Aligned_cols=89 Identities=13% Similarity=0.120 Sum_probs=50.8
Q ss_pred HHHHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccC-CCc-HHHH
Q psy6858 159 LCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQL-SRP-EEVE 236 (592)
Q Consensus 159 lv~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~-s~p-~~~e 236 (592)
.+++.|...+................+.++.+.++++|+.+..+...... ..+..... ..+ ....
T Consensus 3 ~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~~~~~~~~~-------------~~~~~~~~~~~~~r~~~ 69 (213)
T PF01261_consen 3 AAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIASLHPPTNF-------------WSPDEENGSANDEREEA 69 (213)
T ss_dssp HHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEEEEEEEESS-------------SCTGTTSTTSSSHHHHH
T ss_pred HHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEEEEeccccc-------------ccccccccCcchhhHHH
Confidence 34556888887665432211111467888999999999985554311100 00000000 000 1222
Q ss_pred HHHHHHHHHHhcccCCCEEEEecc
Q psy6858 237 AEAVTRACTIANQVDCPLYVVHIM 260 (592)
Q Consensus 237 ~eav~~~i~la~~~~~pl~i~hv~ 260 (592)
.+.+.+.+.+|+..|++..++|..
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g 93 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSG 93 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECT
T ss_pred HHHHHHHHHHHHHhCCCceeecCc
Confidence 456778999999999999999966
No 247
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=25.57 E-value=6.7e+02 Score=25.74 Aligned_cols=109 Identities=11% Similarity=0.044 Sum_probs=64.0
Q ss_pred CCCChhhHHHHHHHHHcCCeeEEeccccCCCCccH-------HHHHHHHHHHhccCceeeeeccccccCCChHHHHHHHH
Q psy6858 86 GATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESL-------IKTYESWRQKADEKVCCDYALHVGITWWSDQVQQEMAE 158 (592)
Q Consensus 86 ~~~~~d~~~~~~~~ala~GtTti~d~~~~~~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (592)
+....+.+..-....+..|+.-++ +.+..|+.. .+.++.+.+....+..+. +++...+-...-++.+
T Consensus 24 g~iD~~~l~~lv~~li~~Gv~Gi~--v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi----~Gv~~~~t~~ai~~a~ 97 (309)
T cd00952 24 DTVDLDETARLVERLIAAGVDGIL--TMGTFGECATLTWEEKQAFVATVVETVAGRVPVF----VGATTLNTRDTIARTR 97 (309)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEE--ECcccccchhCCHHHHHHHHHHHHHHhCCCCCEE----EEeccCCHHHHHHHHH
Confidence 456677777788888899999995 445555432 222333333333332222 2333333333445556
Q ss_pred HHHHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHH-Hc-CCeEEEe
Q psy6858 159 LCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIK-NL-GAIAMVH 202 (592)
Q Consensus 159 lv~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~-~~-g~~~~vH 202 (592)
.+++.|+..+-+...| .+..+++++.+-++... .. ++++.+.
T Consensus 98 ~A~~~Gad~vlv~~P~--y~~~~~~~l~~yf~~va~a~~~lPv~iY 141 (309)
T cd00952 98 ALLDLGADGTMLGRPM--WLPLDVDTAVQFYRDVAEAVPEMAIAIY 141 (309)
T ss_pred HHHHhCCCEEEECCCc--CCCCCHHHHHHHHHHHHHhCCCCcEEEE
Confidence 6667799888765442 34467888888776654 45 4777776
No 248
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=25.23 E-value=7.9e+02 Score=25.58 Aligned_cols=102 Identities=18% Similarity=0.192 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecC-----------chhhhHHHHHHHHHc
Q psy6858 151 QVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAE-----------NGEIIDKNTQKLLAA 219 (592)
Q Consensus 151 ~~~~~~~~lv~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae-----------~~~~i~~~~~~~~~~ 219 (592)
++.++++.+. +.|+..+.+..+ .......+.+.++++..++....+.+|+. .+....+..+++.+.
T Consensus 74 eI~e~~~~~~-~~G~~~i~l~gG--~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~LkeA 150 (343)
T TIGR03551 74 EIAERAAEAW-KAGATEVCIQGG--IHPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEA 150 (343)
T ss_pred HHHHHHHHHH-HCCCCEEEEEeC--CCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 3444454443 468887765522 12335677788999999987655566653 233345677889999
Q ss_pred CCCCCCC--cc--------CCCcHHHHHHHHHHHHHHhcccCCCEE
Q psy6858 220 GIKGPEG--HQ--------LSRPEEVEAEAVTRACTIANQVDCPLY 255 (592)
Q Consensus 220 G~~~p~~--~~--------~s~p~~~e~eav~~~i~la~~~~~pl~ 255 (592)
|+..-.+ .. ...|.....+...++++.+++.|.++.
T Consensus 151 Gl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~ 196 (343)
T TIGR03551 151 GLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTT 196 (343)
T ss_pred CcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCccc
Confidence 9874321 11 112211112333567777777776653
No 249
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=24.67 E-value=6.3e+02 Score=25.80 Aligned_cols=79 Identities=14% Similarity=0.185 Sum_probs=51.9
Q ss_pred CHHHHHH-HHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCE--EEE
Q psy6858 181 SDGELYD-AFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPL--YVV 257 (592)
Q Consensus 181 ~~~~l~~-~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl--~i~ 257 (592)
..+.+.. +...|++.++++.+|.-.+. ..+...+.++.|+++----.-..|-+-..+.+.+..++|+..|+++ .+-
T Consensus 58 g~~~~~~~~~~~A~~~~vPV~lHLDH~~-~~e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG 136 (283)
T PRK07998 58 GYDYIYEIVKRHADKMDVPVSLHLDHGK-TFEDVKQAVRAGFTSVMIDGAALPFEENIAFTKEAVDFAKSYGVPVEAELG 136 (283)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEECcCCC-CHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 3344554 44567788999999976543 2345667788898764322222355555677888889999999887 466
Q ss_pred ecc
Q psy6858 258 HIM 260 (592)
Q Consensus 258 hv~ 260 (592)
|+.
T Consensus 137 ~vg 139 (283)
T PRK07998 137 AIL 139 (283)
T ss_pred cCC
Confidence 664
No 250
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=24.63 E-value=5.6e+02 Score=23.65 Aligned_cols=52 Identities=23% Similarity=0.144 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEeeCCCcC------CC------HHHHHHHHHHHHHcCCeEE-Ee
Q psy6858 151 QVQQEMAELCEKHGVNSFKTFMAYKGLYM------LS------DGELYDAFSAIKNLGAIAM-VH 202 (592)
Q Consensus 151 ~~~~~~~~lv~~~Gv~~~k~~~~~~~~~~------~~------~~~l~~~~~~a~~~g~~~~-vH 202 (592)
...+++.+++++.|+.-..+......... .. .+.+.+.++.|+.+|+... +|
T Consensus 27 ~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lg~~~i~~~ 91 (213)
T PF01261_consen 27 DEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAKRLGAKYIVVH 91 (213)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHHHHTBSEEEEE
T ss_pred HHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHHHhCCCceeec
Confidence 34677888888888864333222222211 12 5689999999999998744 45
No 251
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=24.33 E-value=7.2e+02 Score=24.81 Aligned_cols=98 Identities=16% Similarity=0.181 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHHHcCCcEEEEEEe--eCCCcCCCHH-H---HHHHHHHHHHc-CCeEEEecCchhhhHHHHHHHHHcCCC
Q psy6858 150 DQVQQEMAELCEKHGVNSFKTFMA--YKGLYMLSDG-E---LYDAFSAIKNL-GAIAMVHAENGEIIDKNTQKLLAAGIK 222 (592)
Q Consensus 150 ~~~~~~~~~lv~~~Gv~~~k~~~~--~~~~~~~~~~-~---l~~~~~~a~~~-g~~~~vHae~~~~i~~~~~~~~~~G~~ 222 (592)
++..+...++++ .|+..+.+... ..+....+.+ | +..+++.+++. +.++++|..+... .+..++.|..
T Consensus 23 ~~~~~~a~~~~~-~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT~~~~v----i~~al~~G~~ 97 (257)
T TIGR01496 23 DKAVAHAERMLE-EGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVDTYRAEV----ARAALEAGAD 97 (257)
T ss_pred HHHHHHHHHHHH-CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCCHHH----HHHHHHcCCC
Confidence 344555555554 59888887421 1122223433 4 66777888776 9999999988654 4445555654
Q ss_pred CCCCccCCCcHHHHHHHHHHHHHHhcccCCCEEEEecc
Q psy6858 223 GPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIM 260 (592)
Q Consensus 223 ~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~i~hv~ 260 (592)
-........ ....+.+++++++++-+.|..
T Consensus 98 iINsis~~~--------~~~~~~l~~~~~~~vV~m~~~ 127 (257)
T TIGR01496 98 IINDVSGGQ--------DPAMLEVAAEYGVPLVLMHMR 127 (257)
T ss_pred EEEECCCCC--------CchhHHHHHHcCCcEEEEeCC
Confidence 322222211 113455677889999998864
No 252
>PF15585 Imm46: Immunity protein 46
Probab=24.28 E-value=50 Score=29.26 Aligned_cols=51 Identities=20% Similarity=0.328 Sum_probs=36.5
Q ss_pred HcCCCCCCccccCCCCccEEEEeCCceEEecCCcccccCCCCcccCeEEeeeeeEEEECCEEEEECCeee
Q psy6858 400 IFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLR 469 (592)
Q Consensus 400 ~lgl~~~~G~I~~G~~ADlVv~d~~~~~~i~~~~~~~~~~~~~~~g~~~~g~~~~Viv~GkvV~~~g~l~ 469 (592)
++.++.++|.|+||+.-=|=++|.+.+ ..+|-| -..|+++|++-.++..++
T Consensus 70 ii~lf~~i~e~aPGSYGlLy~rDDEd~-----------~~~neF--------rV~vl~RG~~te~~D~~L 120 (129)
T PF15585_consen 70 IIELFERIAEIAPGSYGLLYIRDDEDP-----------EHFNEF--------RVFVLARGELTEQRDPFL 120 (129)
T ss_pred HHHHHHHHHHhCCCceeEEEEecCCCC-----------CCCCce--------EEEEEEccEEeeccCCCc
Confidence 444556789999999999999987622 123334 247899999888777654
No 253
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=23.87 E-value=7.8e+02 Score=25.02 Aligned_cols=111 Identities=13% Similarity=0.009 Sum_probs=62.5
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEEEeeCCCcCCCHHHHH-HHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCC
Q psy6858 148 WSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELY-DAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEG 226 (592)
Q Consensus 148 ~~~~~~~~~~~lv~~~Gv~~~k~~~~~~~~~~~~~~~l~-~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~ 226 (592)
++.+..+.+-+...+.+..-+-.. +.....-...+.+. -+...|++...++.+|.-.+. -.+...+.++.|++...-
T Consensus 26 ~n~e~~~avi~aAe~~~~Pvii~~-~~~~~~~~~~~~~~~~~~~~a~~~~vpv~lHlDH~~-~~e~i~~Al~~G~tsVm~ 103 (281)
T PRK06806 26 ANMEMVMGAIKAAEELNSPIILQI-AEVRLNHSPLHLIGPLMVAAAKQAKVPVAVHFDHGM-TFEKIKEALEIGFTSVMF 103 (281)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEc-CcchhccCChHHHHHHHHHHHHHCCCCEEEECCCCC-CHHHHHHHHHcCCCEEEE
Confidence 344444444454544444333221 11111112333344 334567788999999976543 235677788889876443
Q ss_pred ccCCCcHHHHHHHHHHHHHHhcccCCCEE--EEecc
Q psy6858 227 HQLSRPEEVEAEAVTRACTIANQVDCPLY--VVHIM 260 (592)
Q Consensus 227 ~~~s~p~~~e~eav~~~i~la~~~~~pl~--i~hv~ 260 (592)
-.-..|.+-..+...+...+++..|+++. +.|+.
T Consensus 104 d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG 139 (281)
T PRK06806 104 DGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRVG 139 (281)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeEC
Confidence 33333444445666777888888888764 55665
No 254
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=23.34 E-value=8.8e+02 Score=25.47 Aligned_cols=24 Identities=8% Similarity=0.160 Sum_probs=15.0
Q ss_pred HHHHHHHHHhcccCCCEEEEeccc
Q psy6858 238 EAVTRACTIANQVDCPLYVVHIMS 261 (592)
Q Consensus 238 eav~~~i~la~~~~~pl~i~hv~s 261 (592)
+.+.+++...++.+.++.+.-+.+
T Consensus 141 ~~~~~~i~~l~~~g~~v~i~~vv~ 164 (378)
T PRK05301 141 AKKLAVARLVKAHGYPLTLNAVIH 164 (378)
T ss_pred HHHHHHHHHHHHCCCceEEEEEee
Confidence 344556777777888776544443
No 255
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=22.96 E-value=8.2e+02 Score=24.95 Aligned_cols=124 Identities=18% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccccccCCChH-----------HHHHHHHHHHH
Q psy6858 94 YHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVGITWWSDQ-----------VQQEMAELCEK 162 (592)
Q Consensus 94 ~~~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~lv~~ 162 (592)
+...+.|+..|+|+|.=-...-+-+.-++.-++..+.+......-=+--..+....+. ..++..+++++
T Consensus 87 ~e~i~~ai~~GftSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~~ 166 (284)
T PRK12857 87 FEQVMKCIRNGFTSVMIDGSKLPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFVEE 166 (284)
T ss_pred HHHHHHHHHcCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHHHH
Q ss_pred cCCcEEEEEEe-----eCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCC
Q psy6858 163 HGVNSFKTFMA-----YKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGI 221 (592)
Q Consensus 163 ~Gv~~~k~~~~-----~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~ 221 (592)
-|+..+-+..+ |++...++.+.|.++-+.. +.++..|-..+ +-.+..+++.+.|+
T Consensus 167 TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~---~vPLVlHGgSG-~~~e~~~~ai~~Gi 226 (284)
T PRK12857 167 TGVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELV---NIPIVLHGSSG-VPDEAIRKAISLGV 226 (284)
T ss_pred HCCCEEeeccCccccccCCCCcCCHHHHHHHHHHh---CCCEEEeCCCC-CCHHHHHHHHHcCC
No 256
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=22.52 E-value=8e+02 Score=25.09 Aligned_cols=71 Identities=8% Similarity=0.083 Sum_probs=43.1
Q ss_pred HHHHHHH-HHHHHc--CCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCEE
Q psy6858 183 GELYDAF-SAIKNL--GAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLY 255 (592)
Q Consensus 183 ~~l~~~~-~~a~~~--g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~ 255 (592)
+.+...+ ..+++. ++++.+|.-.++ .+...++++.|++..---.-..|.+-..+...+...+++..++++.
T Consensus 61 ~~~~~~~~~~a~~~~~~vPV~lHLDH~~--~~~i~~ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~vE 134 (293)
T PRK07315 61 KVCKNLIENLVESMGITVPVAIHLDHGH--YEDALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISVE 134 (293)
T ss_pred HHHHHHHHHHHHHcCCCCcEEEECCCCC--HHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 3444433 345566 668999987663 3466777888877644333333444445666677777777777663
No 257
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=22.51 E-value=6.8e+02 Score=24.09 Aligned_cols=95 Identities=13% Similarity=0.142 Sum_probs=52.2
Q ss_pred CCChhhHHHHHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccccccCCChHHHHHHHHHHHHcCCc
Q psy6858 87 ATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVN 166 (592)
Q Consensus 87 ~~~~d~~~~~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~Gv~ 166 (592)
..+.++...-+++++++|++.+- .. .......+.+++.++... .. ..|. .+-.+ .++.++.+. .|..
T Consensus 12 ~~~~~~a~~ia~al~~gGi~~iE-it--~~tp~a~~~I~~l~~~~~-~~--~vGA---GTVl~---~e~a~~ai~-aGA~ 78 (201)
T PRK06015 12 IDDVEHAVPLARALAAGGLPAIE-IT--LRTPAALDAIRAVAAEVE-EA--IVGA---GTILN---AKQFEDAAK-AGSR 78 (201)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEE-Ee--CCCccHHHHHHHHHHHCC-CC--EEee---EeCcC---HHHHHHHHH-cCCC
Confidence 34567777788889999999883 32 223345666666655442 22 2222 22222 334444443 4765
Q ss_pred EEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCc
Q psy6858 167 SFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAEN 205 (592)
Q Consensus 167 ~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~ 205 (592)
.+ +++..-.++++.|+++++++.-=+-+
T Consensus 79 Fi-----------vSP~~~~~vi~~a~~~~i~~iPG~~T 106 (201)
T PRK06015 79 FI-----------VSPGTTQELLAAANDSDVPLLPGAAT 106 (201)
T ss_pred EE-----------ECCCCCHHHHHHHHHcCCCEeCCCCC
Confidence 33 12223346667788888876654443
No 258
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=22.34 E-value=5.3e+02 Score=25.83 Aligned_cols=41 Identities=20% Similarity=0.144 Sum_probs=28.5
Q ss_pred HHHHHHHHHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEE
Q psy6858 154 QEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMV 201 (592)
Q Consensus 154 ~~~~~lv~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~v 201 (592)
+..-+.+++.|++++-+ ..+..++..++++.|+++|+....
T Consensus 107 e~f~~~~~~aGvdGvii-------pDLp~ee~~~~~~~~~~~gl~~I~ 147 (258)
T PRK13111 107 ERFAADAAEAGVDGLII-------PDLPPEEAEELRAAAKKHGLDLIF 147 (258)
T ss_pred HHHHHHHHHcCCcEEEE-------CCCCHHHHHHHHHHHHHcCCcEEE
Confidence 34444455678887764 135668899999999999976554
No 259
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=21.89 E-value=6.3e+02 Score=26.69 Aligned_cols=107 Identities=18% Similarity=0.199 Sum_probs=61.9
Q ss_pred CChhhHHHHHHHHHcCCeeEEeccccCCCCccHHHHHHHHHHHhccCceeeeeccccccCCChHHHHHHHHHHHHcCCcE
Q psy6858 88 TSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNS 167 (592)
Q Consensus 88 ~~~d~~~~~~~~ala~GtTti~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~Gv~~ 167 (592)
++.++-..-++...+.|+..|- ...|...+.-.+.++...+.... ..+ ..|.....++++.++ +.|+..
T Consensus 19 ~s~~~k~~ia~~L~~~Gv~~IE-vG~p~~~~~~~e~i~~i~~~~~~---~~v------~~~~r~~~~di~~a~-~~g~~~ 87 (363)
T TIGR02090 19 LTVEQKVEIARKLDELGVDVIE-AGFPIASEGEFEAIKKISQEGLN---AEI------CSLARALKKDIDKAI-DCGVDS 87 (363)
T ss_pred CCHHHHHHHHHHHHHcCCCEEE-EeCCCCChHHHHHHHHHHhcCCC---cEE------EEEcccCHHHHHHHH-HcCcCE
Confidence 5566666667777789998883 44444433334444444433221 111 122223355666655 469998
Q ss_pred EEEEEeeCCC-----cCCCH----HHHHHHHHHHHHcCCeEEEecCc
Q psy6858 168 FKTFMAYKGL-----YMLSD----GELYDAFSAIKNLGAIAMVHAEN 205 (592)
Q Consensus 168 ~k~~~~~~~~-----~~~~~----~~l~~~~~~a~~~g~~~~vHae~ 205 (592)
+.+|..-... ...+. +.+.+.++.|++.|..+.+.+++
T Consensus 88 i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~ed 134 (363)
T TIGR02090 88 IHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAED 134 (363)
T ss_pred EEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 8888753221 12343 34667888999999998888765
No 260
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=21.57 E-value=8.4e+02 Score=24.54 Aligned_cols=157 Identities=18% Similarity=0.168 Sum_probs=86.5
Q ss_pred CCChhhHHHHHHHHHcCCeeEEeccccCC--------CCccHHHHHHHHHHHhccCceeeeeccc------cccCCChHH
Q psy6858 87 ATSVDDFYHGTKAAVAGGTTTIIDFALPR--------KGESLIKTYESWRQKADEKVCCDYALHV------GITWWSDQV 152 (592)
Q Consensus 87 ~~~~d~~~~~~~~ala~GtTti~d~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 152 (592)
.++.++...-++...+.|+..| ++..|. .++...+.++.+.+.... . .+..+. ++.....+.
T Consensus 17 ~~~~~~~~~ia~~L~~~Gv~~i-E~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~-~--~l~~~~r~~~~~~~~~~p~~~ 92 (275)
T cd07937 17 RMRTEDMLPIAEALDEAGFFSL-EVWGGATFDVCMRFLNEDPWERLRELRKAMPN-T--PLQMLLRGQNLVGYRHYPDDV 92 (275)
T ss_pred eccHHHHHHHHHHHHHcCCCEE-EccCCcchhhhccccCCCHHHHHHHHHHhCCC-C--ceehhcccccccCccCCCcHH
Confidence 3556666666777778898887 344333 244555666666654332 1 111111 122223334
Q ss_pred HHHHHHHHHHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEec-------CchhhhHHHHHHHHHcCCCCCC
Q psy6858 153 QQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHA-------ENGEIIDKNTQKLLAAGIKGPE 225 (592)
Q Consensus 153 ~~~~~~lv~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHa-------e~~~~i~~~~~~~~~~G~~~p~ 225 (592)
.++.-+...+.|+..+.++...+ .-+.+.+.++.+++.|..+.+.. .+.+...+..+++.+.|.....
T Consensus 93 ~~~di~~~~~~g~~~iri~~~~~-----~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~ 167 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIFDALN-----DVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSIC 167 (275)
T ss_pred HHHHHHHHHHcCCCEEEEeecCC-----hHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 44444445567999888876432 34678899999999998766532 2234455666777887755321
Q ss_pred ---CccCCCcHHHHHHHHHHHHHHhcccCCCEEE
Q psy6858 226 ---GHQLSRPEEVEAEAVTRACTIANQVDCPLYV 256 (592)
Q Consensus 226 ---~~~~s~p~~~e~eav~~~i~la~~~~~pl~i 256 (592)
..-...|+++. +.+.... +..++|+.+
T Consensus 168 l~DT~G~~~P~~v~-~lv~~l~---~~~~~~l~~ 197 (275)
T cd07937 168 IKDMAGLLTPYAAY-ELVKALK---KEVGLPIHL 197 (275)
T ss_pred EcCCCCCCCHHHHH-HHHHHHH---HhCCCeEEE
Confidence 22234566654 2333222 233566664
No 261
>KOG4549|consensus
Probab=21.39 E-value=1.5e+02 Score=26.35 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=17.5
Q ss_pred CCeEEecCCCEEeeCccccCcCcc
Q psy6858 58 GVRVIDAAGSYVIPGGIDPHTHFE 81 (592)
Q Consensus 58 ~~~vIDa~G~~V~PG~ID~HtH~~ 81 (592)
.+-.+|+. ..|.|-+||.|.|..
T Consensus 6 ~~~~fdld-ytiwP~~vdthl~~p 28 (144)
T KOG4549|consen 6 EAMQFDLD-YTIWPRLVDTHLDYP 28 (144)
T ss_pred ceeEEecc-ceeeeEEEEeccccc
Confidence 33456664 679999999999973
No 262
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=21.37 E-value=8.5e+02 Score=24.54 Aligned_cols=56 Identities=11% Similarity=0.059 Sum_probs=37.8
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHc--CCeEEEecCch
Q psy6858 148 WSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNL--GAIAMVHAENG 206 (592)
Q Consensus 148 ~~~~~~~~~~~lv~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~--g~~~~vHae~~ 206 (592)
++.+...++.+.+.+.|+..+.+- .....+++.+++++++..++. +.++.+|+.|.
T Consensus 146 ~~~~~~~~~~~~~~~~Ga~~i~l~---DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hnd 203 (274)
T cd07938 146 VPPERVAEVAERLLDLGCDEISLG---DTIGVATPAQVRRLLEAVLERFPDEKLALHFHDT 203 (274)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEC---CCCCccCHHHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 345555555555556788766432 123357899999999988775 47899998875
No 263
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=21.36 E-value=5.2e+02 Score=27.76 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhcccCCCEEEEecc
Q psy6858 237 AEAVTRACTIANQVDCPLYVVHIM 260 (592)
Q Consensus 237 ~eav~~~i~la~~~~~pl~i~hv~ 260 (592)
.+...+.+++++++++-+.+-...
T Consensus 201 y~~fD~lLeI~k~yDVtLSLGDgl 224 (420)
T PF01964_consen 201 YEHFDRLLEIAKEYDVTLSLGDGL 224 (420)
T ss_dssp HHTHHHHHHHHTTTT-EEEE--TT
T ss_pred HHhHHHHHHHHHHhCeeEeccccc
Confidence 355667889999999887765544
No 264
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=21.31 E-value=8.8e+02 Score=25.40 Aligned_cols=40 Identities=23% Similarity=0.295 Sum_probs=20.1
Q ss_pred HHHHHHHHHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcC
Q psy6858 154 QEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLG 196 (592)
Q Consensus 154 ~~~~~lv~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g 196 (592)
-++.+++...|++- ..++--++..+|+++.++++.|++.|
T Consensus 245 le~aE~i~~a~idv---lIaPv~lPG~ND~E~~~iIe~A~~iG 284 (414)
T COG2100 245 LEVAEYIANAGIDV---LIAPVWLPGVNDDEMPKIIEWAREIG 284 (414)
T ss_pred HHHHHHHHhCCCCE---EEeeeecCCcChHHHHHHHHHHHHhC
Confidence 34444444434432 22333444556666666666666655
No 265
>PRK06256 biotin synthase; Validated
Probab=20.71 E-value=6.7e+02 Score=25.89 Aligned_cols=73 Identities=18% Similarity=0.206 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCC
Q psy6858 151 QVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPE 225 (592)
Q Consensus 151 ~~~~~~~~lv~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~ 225 (592)
++.++++.+. +.|+..+-...+.........+.+.++++.+++. ..+.+++..+.+-.+..+++.+.|+..-.
T Consensus 95 eI~~~~~~~~-~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~-~~i~~~~~~g~l~~e~l~~LkeaG~~~v~ 167 (336)
T PRK06256 95 ELIEAAKEAI-EEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEE-TDLEICACLGLLTEEQAERLKEAGVDRYN 167 (336)
T ss_pred HHHHHHHHHH-HCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhc-CCCcEEecCCcCCHHHHHHHHHhCCCEEe
Confidence 3444555444 3577666544332222111124677777777764 33444555555566778888899987543
No 266
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=20.55 E-value=9e+02 Score=24.53 Aligned_cols=79 Identities=13% Similarity=0.073 Sum_probs=49.7
Q ss_pred CHHHHHHHH-HHHHHcCCeEEEecCchhhhHHHHHHHHHcCCCCCCCccCCCcHHHHHHHHHHHHHHhcccCCCEE--EE
Q psy6858 181 SDGELYDAF-SAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLY--VV 257 (592)
Q Consensus 181 ~~~~l~~~~-~~a~~~g~~~~vHae~~~~i~~~~~~~~~~G~~~p~~~~~s~p~~~e~eav~~~i~la~~~~~pl~--i~ 257 (592)
..+.+...+ ..|++...++.+|.-.+.- .+...+.++.|+++.---.-..|-+-..+...+.+++++..|+.+. +-
T Consensus 53 ~~~~~~~~~~~~a~~~~VPV~lHLDH~~~-~~~i~~ai~~GftSVMiD~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG 131 (276)
T cd00947 53 GLELLVAMVKAAAERASVPVALHLDHGSS-FELIKRAIRAGFSSVMIDGSHLPFEENVAKTKEVVELAHAYGVSVEAELG 131 (276)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEECCCCCC-HHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEe
Confidence 344555555 4566778999999755431 3456677888877644333334555556677778888887777664 44
Q ss_pred ecc
Q psy6858 258 HIM 260 (592)
Q Consensus 258 hv~ 260 (592)
|+.
T Consensus 132 ~i~ 134 (276)
T cd00947 132 RIG 134 (276)
T ss_pred eec
Confidence 443
No 267
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=20.38 E-value=9e+02 Score=24.47 Aligned_cols=110 Identities=13% Similarity=-0.007 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCeeEEeccc----------cCCCCccHHHHHHHHHHHhccCceeeeecccccc---CCChHHHHHHHHHH
Q psy6858 94 YHGTKAAVAGGTTTIIDFA----------LPRKGESLIKTYESWRQKADEKVCCDYALHVGIT---WWSDQVQQEMAELC 160 (592)
Q Consensus 94 ~~~~~~ala~GtTti~d~~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~lv 160 (592)
..+...|++.|+..|.=+. .....+..++.+.+....+......-...-.... ..+++...++.+.+
T Consensus 77 ~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~ 156 (280)
T cd07945 77 DKSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFL 156 (280)
T ss_pred HHHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHH
Q ss_pred HHcCCcEEEEEEeeCCCcCCCHHHHHHHHHHHHHc--CCeEEEecCch
Q psy6858 161 EKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNL--GAIAMVHAENG 206 (592)
Q Consensus 161 ~~~Gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~--g~~~~vHae~~ 206 (592)
.+.|+..+. -.......++.+++++++..++. +.++.+|+.|.
T Consensus 157 ~~~G~~~i~---l~DT~G~~~P~~v~~l~~~l~~~~~~~~i~~H~Hnd 201 (280)
T cd07945 157 SDLPIKRIM---LPDTLGILSPFETYTYISDMVKRYPNLHFDFHAHND 201 (280)
T ss_pred HHcCCCEEE---ecCCCCCCCHHHHHHHHHHHHhhCCCCeEEEEeCCC
No 268
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=20.36 E-value=2.2e+02 Score=28.02 Aligned_cols=55 Identities=5% Similarity=-0.087 Sum_probs=37.4
Q ss_pred HHHHhcCCceEEeCC-CCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHHHHcCC
Q psy6858 327 LTLLNENALQTTGSD-NCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNL 403 (592)
Q Consensus 327 ~~~l~~G~~~~~gsD-~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~Ak~lgl 403 (592)
....+.|.+++++|| |.+... ...++... +....+++.+++++..+.+|.+++.+
T Consensus 161 ~~~~~~g~piiisSdAh~~~~l-----------------~~~~~~~~-----l~~~~Gl~~~~~~~~~~~~~~~i~~~ 216 (237)
T PRK00912 161 ALARKYDFPLVLTSGAMSCYDL-----------------RSPREMIA-----LAELFGMEEDEALKALSYYPESIIKK 216 (237)
T ss_pred HHHHhcCCCEEEeCCCCccccc-----------------CCHHHHHH-----HHHHcCCCHHHHHHHHHHhHHHHHHh
Confidence 334456999999999 444321 11122222 33457899999999999999999876
No 269
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=20.02 E-value=9.7e+02 Score=24.68 Aligned_cols=52 Identities=19% Similarity=0.138 Sum_probs=30.9
Q ss_pred CC-ceEEeCCCCCCChhhhhcCCCCCCcCCCCCcchhhHHHHHHHhhccCCCCCHHHHHHHHhHhHH
Q psy6858 333 NA-LQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAA 398 (592)
Q Consensus 333 G~-~~~~gsD~~~~~~~~~~~g~~~f~~~p~G~~g~e~~~~~~~~~~v~~~~l~~~e~v~~~T~n~A 398 (592)
|. .+.+|||..-.. ..|.|+..+. .++.+.+.+.+ .+++..++-+++-.|.-
T Consensus 255 G~dhVgiGsDfdg~~------------~~~~gl~~~~-~~~~l~~~L~~-rG~s~~~i~~i~g~N~l 307 (309)
T cd01301 255 GIDHVGLGSDFDGIG------------GTPGGLEDVS-DLPNLTAELLE-RGYSEEEIEKIAGGNFL 307 (309)
T ss_pred CCCeEEECcccCCCC------------CCccccCCHH-HHHHHHHHHHH-cCCCHHHHHHHHhhchh
Confidence 44 588888864321 1234444433 45666665544 56788888888776653
Done!