BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6859
(261 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/118 (19%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 15 DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFD 74
+F+I S ++ W+ Q+ G K + H G + +C + +G+ + T + DK K++D
Sbjct: 55 NFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWD 114
Query: 75 VINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKL 132
+ + I + + D V+ IH++ + ++ + +D + ++ + +++L
Sbjct: 115 LSSNQAIQIAQHD---APVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQL 169
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 96/241 (39%), Gaps = 24/241 (9%)
Query: 15 DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFD 74
+++ ++S D IK W + +F K H I + + + LL + + DK +K++D
Sbjct: 36 EWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93
Query: 75 VINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDF 134
V + + +K V C ++ + VS V I+D K + +
Sbjct: 94 VSSGKCLKTLKGHSN--YVFCCNF--NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 149
Query: 135 TPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIY 194
P V +H+ D + VS I+D +G L L PV +KF+P
Sbjct: 150 DP--VSAVHFNRDG--SLIVSSSYDGLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNG 204
Query: 195 QVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKF 254
+ +++ L+ W ++ KC+ + KN+ Y +FS G K+
Sbjct: 205 KYILAATLDNTLKLW-----DYSKGKCLK--------TYTGHKNEKYCIFANFSVTGGKW 251
Query: 255 V 255
+
Sbjct: 252 I 252
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 65/168 (38%), Gaps = 10/168 (5%)
Query: 42 FRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGD 101
H + S+ + NG L + ++DK +K++ +D + L + + + D
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA--YDGKFEKTISGHKLGISDVAWSSD 76
Query: 102 AIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSH 161
+ VS D + I+D + +K V C ++ + VS
Sbjct: 77 S--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNF--NPQSNLIVSGSFDES 130
Query: 162 VHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYW 209
V I+D K G L L H+ PV + FN ++VS G+ W
Sbjct: 131 VRIWDVK-TGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 15/81 (18%)
Query: 181 HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT 240
HTK V +KF+P + + S +++ W Y + KF K + + +K
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKFEKTI-------------SGHKL 66
Query: 241 YPSGLSFSPDGNKFVTISMDR 261
S +++S D N V+ S D+
Sbjct: 67 GISDVAWSSDSNLLVSASDDK 87
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 96/241 (39%), Gaps = 24/241 (9%)
Query: 15 DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFD 74
+++ ++S D IK W + +F K H I + + + LL + + DK +K++D
Sbjct: 35 EWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 92
Query: 75 VINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDF 134
V + + +K V C ++ + VS V I+D K + +
Sbjct: 93 VSSGKCLKTLKGHSN--YVFCCNF--NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 148
Query: 135 TPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIY 194
P V +H+ D + VS I+D +G L L PV +KF+P
Sbjct: 149 DP--VSAVHFNRDG--SLIVSSSYDGLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNG 203
Query: 195 QVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKF 254
+ +++ L+ W ++ KC+ + KN+ Y +FS G K+
Sbjct: 204 KYILAATLDNTLKLW-----DYSKGKCLK--------TYTGHKNEKYCIFANFSVTGGKW 250
Query: 255 V 255
+
Sbjct: 251 I 251
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 65/168 (38%), Gaps = 10/168 (5%)
Query: 42 FRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGD 101
H + S+ + NG L + ++DK +K++ +D + L + + + D
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA--YDGKFEKTISGHKLGISDVAWSSD 75
Query: 102 AIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSH 161
+ VS D + I+D + +K V C ++ + VS
Sbjct: 76 S--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNF--NPQSNLIVSGSFDES 129
Query: 162 VHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYW 209
V I+D K G L L H+ PV + FN ++VS G+ W
Sbjct: 130 VRIWDVK-TGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIW 175
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 15/81 (18%)
Query: 181 HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT 240
HTK V +KF+P + + S +++ W Y + KF K + + +K
Sbjct: 21 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKFEKTI-------------SGHKL 65
Query: 241 YPSGLSFSPDGNKFVTISMDR 261
S +++S D N V+ S D+
Sbjct: 66 GISDVAWSSDSNLLVSASDDK 86
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 96/241 (39%), Gaps = 24/241 (9%)
Query: 15 DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFD 74
+++ ++S D IK W + +F K H I + + + LL + + DK +K++D
Sbjct: 37 EWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 94
Query: 75 VINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDF 134
V + + +K V C ++ + VS V I+D K + +
Sbjct: 95 VSSGKCLKTLKGHSN--YVFCCNF--NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 150
Query: 135 TPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIY 194
P V +H+ D + VS I+D +G L L PV +KF+P
Sbjct: 151 DP--VSAVHFNRDG--SLIVSSSYDGLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNG 205
Query: 195 QVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKF 254
+ +++ L+ W ++ KC+ + KN+ Y +FS G K+
Sbjct: 206 KYILAATLDNTLKLW-----DYSKGKCLK--------TYTGHKNEKYCIFANFSVTGGKW 252
Query: 255 V 255
+
Sbjct: 253 I 253
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 65/168 (38%), Gaps = 10/168 (5%)
Query: 42 FRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGD 101
H + S+ + NG L + ++DK +K++ +D + L + + + D
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA--YDGKFEKTISGHKLGISDVAWSSD 77
Query: 102 AIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSH 161
+ VS D + I+D + +K V C ++ + VS
Sbjct: 78 S--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNF--NPQSNLIVSGSFDES 131
Query: 162 VHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYW 209
V I+D K G L L H+ PV + FN ++VS G+ W
Sbjct: 132 VRIWDVK-TGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIW 177
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 15/81 (18%)
Query: 181 HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT 240
HTK V +KF+P + + S +++ W Y + KF K + + +K
Sbjct: 23 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKFEKTI-------------SGHKL 67
Query: 241 YPSGLSFSPDGNKFVTISMDR 261
S +++S D N V+ S D+
Sbjct: 68 GISDVAWSSDSNLLVSASDDK 88
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 96/241 (39%), Gaps = 24/241 (9%)
Query: 15 DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFD 74
+++ ++S D IK W + +F K H I + + + LL + + DK +K++D
Sbjct: 42 EWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 99
Query: 75 VINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDF 134
V + + +K V C ++ + VS V I+D K + +
Sbjct: 100 VSSGKCLKTLKGHSN--YVFCCNF--NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 155
Query: 135 TPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIY 194
P V +H+ D + VS I+D +G L L PV +KF+P
Sbjct: 156 DP--VSAVHFNRDG--SLIVSSSYDGLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNG 210
Query: 195 QVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKF 254
+ +++ L+ W ++ KC+ + KN+ Y +FS G K+
Sbjct: 211 KYILAATLDNTLKLW-----DYSKGKCLK--------TYTGHKNEKYCIFANFSVTGGKW 257
Query: 255 V 255
+
Sbjct: 258 I 258
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 65/168 (38%), Gaps = 10/168 (5%)
Query: 42 FRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGD 101
H + S+ + NG L + ++DK +K++ +D + L + + + D
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA--YDGKFEKTISGHKLGISDVAWSSD 82
Query: 102 AIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSH 161
+ VS D + I+D + +K V C ++ + VS
Sbjct: 83 S--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNF--NPQSNLIVSGSFDES 136
Query: 162 VHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYW 209
V I+D K G L L H+ PV + FN ++VS G+ W
Sbjct: 137 VRIWDVK-TGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 96/241 (39%), Gaps = 24/241 (9%)
Query: 15 DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFD 74
+++ ++S D IK W + +F K H I + + + LL + + DK +K++D
Sbjct: 39 EWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 75 VINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDF 134
V + + +K V C ++ + VS V I+D K + +
Sbjct: 97 VSSGKCLKTLKGHSN--YVFCCNF--NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 152
Query: 135 TPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIY 194
P V +H+ D + VS I+D +G L L PV +KF+P
Sbjct: 153 DP--VSAVHFNRDG--SLIVSSSYDGLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNG 207
Query: 195 QVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKF 254
+ +++ L+ W ++ KC+ + KN+ Y +FS G K+
Sbjct: 208 KYILAATLDNTLKLW-----DYSKGKCLK--------TYTGHKNEKYCIFANFSVTGGKW 254
Query: 255 V 255
+
Sbjct: 255 I 255
Score = 30.4 bits (67), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 72/187 (38%), Gaps = 17/187 (9%)
Query: 30 KKQEEGIEFVK-------HFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMIN 82
++ G EFVK H + S+ + NG L + ++DK +K++ +D
Sbjct: 3 QQMGRGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA--YDGKF 60
Query: 83 MIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECI 142
+ L + + + D+ VS D + I+D + +K V C
Sbjct: 61 EKTISGHKLGISDVAWSSDS--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCC 116
Query: 143 HYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDK 202
++ + VS V I+D K G L L H+ PV + FN ++VS
Sbjct: 117 NF--NPQSNLIVSGSFDESVRIWDVK-TGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSY 172
Query: 203 AGILEYW 209
G+ W
Sbjct: 173 DGLCRIW 179
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 15/81 (18%)
Query: 181 HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT 240
HTK V +KF+P + + S +++ W Y + KF K + + +K
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKFEKTI-------------SGHKL 69
Query: 241 YPSGLSFSPDGNKFVTISMDR 261
S +++S D N V+ S D+
Sbjct: 70 GISDVAWSSDSNLLVSASDDK 90
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 96/241 (39%), Gaps = 24/241 (9%)
Query: 15 DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFD 74
+++ ++S D IK W + +F K H I + + + LL + + DK +K++D
Sbjct: 32 EWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 89
Query: 75 VINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDF 134
V + + +K V C ++ + VS V I+D K + +
Sbjct: 90 VSSGKCLKTLKGHSN--YVFCCNF--NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 145
Query: 135 TPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIY 194
P V +H+ D + VS I+D +G L L PV +KF+P
Sbjct: 146 DP--VSAVHFNRDG--SLIVSSSYDGLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNG 200
Query: 195 QVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKF 254
+ +++ L+ W ++ KC+ + KN+ Y +FS G K+
Sbjct: 201 KYILAATLDNTLKLW-----DYSKGKCLK--------TYTGHKNEKYCIFANFSVTGGKW 247
Query: 255 V 255
+
Sbjct: 248 I 248
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 65/168 (38%), Gaps = 10/168 (5%)
Query: 42 FRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGD 101
H + S+ + NG L + ++DK +K++ +D + L + + + D
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA--YDGKFEKTISGHKLGISDVAWSSD 72
Query: 102 AIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSH 161
+ VS D + I+D + +K V C ++ + VS
Sbjct: 73 S--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNF--NPQSNLIVSGSFDES 126
Query: 162 VHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYW 209
V I+D K G L L H+ PV + FN ++VS G+ W
Sbjct: 127 VRIWDVK-TGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIW 172
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 15/81 (18%)
Query: 181 HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT 240
HTK V +KF+P + + S +++ W Y + KF K + + +K
Sbjct: 18 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKFEKTI-------------SGHKL 62
Query: 241 YPSGLSFSPDGNKFVTISMDR 261
S +++S D N V+ S D+
Sbjct: 63 GISDVAWSSDSNLLVSASDDK 83
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 96/241 (39%), Gaps = 24/241 (9%)
Query: 15 DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFD 74
+++ ++S D IK W + +F K H I + + + LL + + DK +K++D
Sbjct: 39 EWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 75 VINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDF 134
V + + +K V C ++ + VS V I+D K + +
Sbjct: 97 VSSGKCLKTLKGHSN--YVFCCNF--NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 152
Query: 135 TPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIY 194
P V +H+ D + VS I+D +G L L PV +KF+P
Sbjct: 153 DP--VSAVHFNRDG--SLIVSSSYDGLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNG 207
Query: 195 QVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKF 254
+ +++ L+ W ++ KC+ + KN+ Y +FS G K+
Sbjct: 208 KYILAATLDNTLKLW-----DYSKGKCLK--------TYTGHKNEKYCIFANFSVTGGKW 254
Query: 255 V 255
+
Sbjct: 255 I 255
Score = 30.4 bits (67), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 72/187 (38%), Gaps = 17/187 (9%)
Query: 30 KKQEEGIEFVK-------HFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMIN 82
++ G EFVK H + S+ + NG L + ++DK +K++ +D
Sbjct: 3 QQMGRGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA--YDGKF 60
Query: 83 MIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECI 142
+ L + + + D+ VS D + I+D + +K V C
Sbjct: 61 EKTISGHKLGISDVAWSSDS--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCC 116
Query: 143 HYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDK 202
++ + VS V I+D K G L L H+ PV + FN ++VS
Sbjct: 117 NF--NPQSNLIVSGSFDESVRIWDVK-TGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSY 172
Query: 203 AGILEYW 209
G+ W
Sbjct: 173 DGLCRIW 179
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 15/81 (18%)
Query: 181 HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT 240
HTK V +KF+P + + S +++ W Y + KF K + + +K
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKFEKTI-------------SGHKL 69
Query: 241 YPSGLSFSPDGNKFVTISMDR 261
S +++S D N V+ S D+
Sbjct: 70 GISDVAWSSDSNLLVSASDDK 90
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 96/241 (39%), Gaps = 24/241 (9%)
Query: 15 DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFD 74
+++ ++S D IK W + +F K H I + + + LL + + DK +K++D
Sbjct: 42 EWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 99
Query: 75 VINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDF 134
V + + +K V C ++ + VS V I+D K + +
Sbjct: 100 VSSGKCLKTLKGHSN--YVFCCNF--NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 155
Query: 135 TPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIY 194
P V +H+ D + VS I+D +G L L PV +KF+P
Sbjct: 156 DP--VSAVHFNRDG--SLIVSSSYDGLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNG 210
Query: 195 QVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKF 254
+ +++ L+ W ++ KC+ + KN+ Y +FS G K+
Sbjct: 211 KYILAATLDNTLKLW-----DYSKGKCLK--------TYTGHKNEKYCIFANFSVTGGKW 257
Query: 255 V 255
+
Sbjct: 258 I 258
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 65/168 (38%), Gaps = 10/168 (5%)
Query: 42 FRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGD 101
H + S+ + NG L + ++DK +K++ +D + L + + + D
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA--YDGKFEKTISGHKLGISDVAWSSD 82
Query: 102 AIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSH 161
+ VS D + I+D + +K V C ++ + VS
Sbjct: 83 S--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNF--NPQSNLIVSGSFDES 136
Query: 162 VHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYW 209
V I+D K G L L H+ PV + FN ++VS G+ W
Sbjct: 137 VRIWDVK-TGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 15/81 (18%)
Query: 181 HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT 240
HTK V +KF+P + + S +++ W Y + KF K + + +K
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKFEKTI-------------SGHKL 72
Query: 241 YPSGLSFSPDGNKFVTISMDR 261
S +++S D N V+ S D+
Sbjct: 73 GISDVAWSSDSNLLVSASDDK 93
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 96/241 (39%), Gaps = 24/241 (9%)
Query: 15 DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFD 74
+++ ++S D IK W + +F K H I + + + LL + + DK +K++D
Sbjct: 41 EWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 98
Query: 75 VINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDF 134
V + + +K V C ++ + VS V I+D K + +
Sbjct: 99 VSSGKCLKTLKGHSN--YVFCCNF--NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 154
Query: 135 TPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIY 194
P V +H+ D + VS I+D +G L L PV +KF+P
Sbjct: 155 DP--VSAVHFNRDG--SLIVSSSYDGLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNG 209
Query: 195 QVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKF 254
+ +++ L+ W ++ KC+ + KN+ Y +FS G K+
Sbjct: 210 KYILAATLDNTLKLW-----DYSKGKCLK--------TYTGHKNEKYCIFANFSVTGGKW 256
Query: 255 V 255
+
Sbjct: 257 I 257
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 65/168 (38%), Gaps = 10/168 (5%)
Query: 42 FRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGD 101
H + S+ + NG L + ++DK +K++ +D + L + + + D
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA--YDGKFEKTISGHKLGISDVAWSSD 81
Query: 102 AIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSH 161
+ VS D + I+D + +K V C ++ + VS
Sbjct: 82 S--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNF--NPQSNLIVSGSFDES 135
Query: 162 VHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYW 209
V I+D K G L L H+ PV + FN ++VS G+ W
Sbjct: 136 VRIWDVK-TGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIW 181
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 15/81 (18%)
Query: 181 HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT 240
HTK V +KF+P + + S +++ W Y + KF K + + +K
Sbjct: 27 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKFEKTI-------------SGHKL 71
Query: 241 YPSGLSFSPDGNKFVTISMDR 261
S +++S D N V+ S D+
Sbjct: 72 GISDVAWSSDSNLLVSASDDK 92
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 96/241 (39%), Gaps = 24/241 (9%)
Query: 15 DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFD 74
+++ ++S D IK W + +F K H I + + + LL + + DK +K++D
Sbjct: 53 EWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 110
Query: 75 VINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDF 134
V + + +K V C ++ + VS V I+D K + +
Sbjct: 111 VSSGKCLKTLKGHSN--YVFCCNF--NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 166
Query: 135 TPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIY 194
P V +H+ D + VS I+D +G L L PV +KF+P
Sbjct: 167 DP--VSAVHFNRDG--SLIVSSSYDGLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNG 221
Query: 195 QVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKF 254
+ +++ L+ W ++ KC+ + KN+ Y +FS G K+
Sbjct: 222 KYILAATLDNTLKLW-----DYSKGKCLK--------TYTGHKNEKYCIFANFSVTGGKW 268
Query: 255 V 255
+
Sbjct: 269 I 269
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 65/165 (39%), Gaps = 10/165 (6%)
Query: 45 HLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIP 104
H + S+ + NG L + ++DK +K++ +D + L + + + D+
Sbjct: 39 HTKAVSSVKFSPNGEWLASSSADKLIKIWGA--YDGKFEKTISGHKLGISDVAWSSDS-- 94
Query: 105 TAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHI 164
VS D + I+D + +K V C ++ + VS V I
Sbjct: 95 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNF--NPQSNLIVSGSFDESVRI 150
Query: 165 YDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYW 209
+D K G L L H+ PV + FN ++VS G+ W
Sbjct: 151 WDVK-TGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIW 193
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 15/81 (18%)
Query: 181 HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT 240
HTK V +KF+P + + S +++ W Y + KF K + + +K
Sbjct: 39 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKFEKTI-------------SGHKL 83
Query: 241 YPSGLSFSPDGNKFVTISMDR 261
S +++S D N V+ S D+
Sbjct: 84 GISDVAWSSDSNLLVSASDDK 104
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 96/241 (39%), Gaps = 24/241 (9%)
Query: 15 DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFD 74
+++ ++S D IK W + +F K H I + + + LL + + DK +K++D
Sbjct: 42 EWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 99
Query: 75 VINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDF 134
V + + +K V C ++ + VS V I+D K + +
Sbjct: 100 VSSGKCLKTLKGHSN--YVFCCNF--NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 155
Query: 135 TPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIY 194
P V +H+ D + VS I+D +G L L PV +KF+P
Sbjct: 156 DP--VSAVHFNRDG--SLIVSSSYDGLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNG 210
Query: 195 QVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKF 254
+ +++ L+ W ++ KC+ + KN+ Y +FS G K+
Sbjct: 211 KYILAATLDNTLKLW-----DYSKGKCLK--------TYTGHKNEKYCIFANFSVTGGKW 257
Query: 255 V 255
+
Sbjct: 258 I 258
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 65/168 (38%), Gaps = 10/168 (5%)
Query: 42 FRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGD 101
H + S+ + NG L + ++DK +K++ +D + L + + + D
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA--YDGKFEKTISGHKLGISDVAWSSD 82
Query: 102 AIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSH 161
+ VS D + I+D + +K V C ++ + VS
Sbjct: 83 S--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNF--NPQSNLIVSGSFDES 136
Query: 162 VHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYW 209
V I+D K G L L H+ PV + FN ++VS G+ W
Sbjct: 137 VRIWDVK-TGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 15/81 (18%)
Query: 181 HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT 240
HTK V +KF+P + + S +++ W Y + KF K + + +K
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKFEKTI-------------SGHKL 72
Query: 241 YPSGLSFSPDGNKFVTISMDR 261
S +++S D N V+ S D+
Sbjct: 73 GISDVAWSSDSNLLVSASDDK 93
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 96/241 (39%), Gaps = 24/241 (9%)
Query: 15 DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFD 74
+++ ++S D IK W + +F K H I + + + LL + + DK +K++D
Sbjct: 36 EWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93
Query: 75 VINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDF 134
V + + +K V C ++ + VS V I+D K + +
Sbjct: 94 VSSGKCLKTLKGHSN--YVFCCNF--NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 149
Query: 135 TPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIY 194
P V +H+ D + VS I+D +G L L PV +KF+P
Sbjct: 150 DP--VSAVHFNRDG--SLIVSSSYDGLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNG 204
Query: 195 QVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKF 254
+ +++ L+ W ++ KC+ + KN+ Y +FS G K+
Sbjct: 205 KYILAATLDNTLKLW-----DYSKGKCLK--------TYTGHKNEKYCIFANFSVTGGKW 251
Query: 255 V 255
+
Sbjct: 252 I 252
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 65/168 (38%), Gaps = 10/168 (5%)
Query: 42 FRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGD 101
H + S+ + NG L + ++DK +K++ +D + L + + + D
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA--YDGKFEKTISGHKLGISDVAWSSD 76
Query: 102 AIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSH 161
+ VS D + I+D + +K V C ++ + VS
Sbjct: 77 S--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNF--NPQSNLIVSGSFDES 130
Query: 162 VHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYW 209
V I+D K G L L H+ PV + FN ++VS G+ W
Sbjct: 131 VRIWDVK-TGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 15/81 (18%)
Query: 181 HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT 240
HTK V +KF+P + + S +++ W Y + KF K + + +K
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKFEKTI-------------SGHKL 66
Query: 241 YPSGLSFSPDGNKFVTISMDR 261
S +++S D N V+ S D+
Sbjct: 67 GISDVAWSSDSNLLVSASDDK 87
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 96/241 (39%), Gaps = 24/241 (9%)
Query: 15 DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFD 74
+++ ++S D IK W + +F K H I + + + LL + + DK +K++D
Sbjct: 58 EWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 115
Query: 75 VINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDF 134
V + + +K V C ++ + VS V I+D K + +
Sbjct: 116 VSSGKCLKTLKGHSN--YVFCCNF--NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 171
Query: 135 TPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIY 194
P V +H+ D + VS I+D +G L L PV +KF+P
Sbjct: 172 DP--VSAVHFNRDG--SLIVSSSYDGLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNG 226
Query: 195 QVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKF 254
+ +++ L+ W ++ KC+ + KN+ Y +FS G K+
Sbjct: 227 KYILAATLDNTLKLW-----DYSKGKCLK--------TYTGHKNEKYCIFANFSVTGGKW 273
Query: 255 V 255
+
Sbjct: 274 I 274
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 65/165 (39%), Gaps = 10/165 (6%)
Query: 45 HLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIP 104
H + S+ + NG L + ++DK +K++ +D + L + + + D+
Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGA--YDGKFEKTISGHKLGISDVAWSSDS-- 99
Query: 105 TAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHI 164
VS D + I+D + +K V C ++ + VS V I
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNF--NPQSNLIVSGSFDESVRI 155
Query: 165 YDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYW 209
+D K G L L H+ PV + FN ++VS G+ W
Sbjct: 156 WDVK-TGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 15/81 (18%)
Query: 181 HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT 240
HTK V +KF+P + + S +++ W Y + KF K + + +K
Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKFEKTI-------------SGHKL 88
Query: 241 YPSGLSFSPDGNKFVTISMDR 261
S +++S D N V+ S D+
Sbjct: 89 GISDVAWSSDSNLLVSASDDK 109
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 96/241 (39%), Gaps = 24/241 (9%)
Query: 15 DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFD 74
+++ ++S D IK W + +F K H I + + + LL + + DK +K++D
Sbjct: 60 EWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 117
Query: 75 VINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDF 134
V + + +K V C ++ + VS V I+D K + +
Sbjct: 118 VSSGKCLKTLKGHSN--YVFCCNF--NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 173
Query: 135 TPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIY 194
P V +H+ D + VS I+D +G L L PV +KF+P
Sbjct: 174 DP--VSAVHFNRDG--SLIVSSSYDGLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNG 228
Query: 195 QVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKF 254
+ +++ L+ W ++ KC+ + KN+ Y +FS G K+
Sbjct: 229 KYILAATLDNTLKLW-----DYSKGKCLK--------TYTGHKNEKYCIFANFSVTGGKW 275
Query: 255 V 255
+
Sbjct: 276 I 276
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 65/165 (39%), Gaps = 10/165 (6%)
Query: 45 HLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIP 104
H + S+ + NG L + ++DK +K++ +D + L + + + D+
Sbjct: 46 HTKAVSSVKFSPNGEWLASSSADKLIKIWGA--YDGKFEKTISGHKLGISDVAWSSDS-- 101
Query: 105 TAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHI 164
VS D + I+D + +K V C ++ + VS V I
Sbjct: 102 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNF--NPQSNLIVSGSFDESVRI 157
Query: 165 YDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYW 209
+D K G L L H+ PV + FN ++VS G+ W
Sbjct: 158 WDVK-TGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 200
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 15/81 (18%)
Query: 181 HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT 240
HTK V +KF+P + + S +++ W Y + KF K + + +K
Sbjct: 46 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKFEKTI-------------SGHKL 90
Query: 241 YPSGLSFSPDGNKFVTISMDR 261
S +++S D N V+ S D+
Sbjct: 91 GISDVAWSSDSNLLVSASDDK 111
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 95/241 (39%), Gaps = 24/241 (9%)
Query: 15 DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFD 74
+++ +S D IK W + +F K H I + + + LL + + DK +K++D
Sbjct: 39 EWLAASSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 75 VINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDF 134
V + + +K V C ++ + VS V I+D K + +
Sbjct: 97 VSSGKCLKTLKGHSN--YVFCCNF--NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 152
Query: 135 TPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIY 194
P V +H+ D + VS I+D +G L L PV +KF+P
Sbjct: 153 DP--VSAVHFNRDG--SLIVSSSYDGLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNG 207
Query: 195 QVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKF 254
+ +++ L+ W ++ KC+ + KN+ Y +FS G K+
Sbjct: 208 KYILAATLDNTLKLW-----DYSKGKCLK--------TYTGHKNEKYCIFANFSVTGGKW 254
Query: 255 V 255
+
Sbjct: 255 I 255
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/245 (18%), Positives = 97/245 (39%), Gaps = 32/245 (13%)
Query: 17 VITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVI 76
+ +AS+D +K W + + ++ H + + + +G + + + DK +K++
Sbjct: 154 IASASDDKTVKLWNRNGQ---LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW--- 207
Query: 77 NFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTP 136
N + + L +V + + D A+ SD + V +++ G + + +
Sbjct: 208 NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT--VKLWNRNGQLLQTLTGHSSS- 264
Query: 137 LTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQV 196
V + + D A+ SD + V +++ NG L L H+ V + F+P Q
Sbjct: 265 --VNGVAFRPDGQTIASASDDKT--VKLWNR--NGQLLQTLTG-HSSSVWGVAFSPDGQT 317
Query: 197 VVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVT 256
+ S ++ W+ Q + + + G++FSPDG +
Sbjct: 318 IASASDDKTVKLWNRNGQHLQ----------------TLTGHSSSVWGVAFSPDGQTIAS 361
Query: 257 ISMDR 261
S D+
Sbjct: 362 ASDDK 366
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/245 (18%), Positives = 98/245 (40%), Gaps = 32/245 (13%)
Query: 17 VITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVI 76
+ +AS+D +K W + + ++ H + + + +G + + + DK +K++
Sbjct: 277 IASASDDKTVKLWNRNGQ---LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW--- 330
Query: 77 NFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTP 136
N + ++ L +V + + D A+ SD + V +++ G + + +
Sbjct: 331 NRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKT--VKLWNRNGQLLQTLTGHSSS- 387
Query: 137 LTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQV 196
V + + D A+ SD + V +++ NG L L H+ V + F+P Q
Sbjct: 388 --VRGVAFSPDGQTIASASDDKT--VKLWNR--NGQLLQTLTG-HSSSVWGVAFSPDDQT 440
Query: 197 VVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVT 256
+ S ++ W+ Q + + + G++FSPDG +
Sbjct: 441 IASASDDKTVKLWNRNGQLLQ----------------TLTGHSSSVRGVAFSPDGQTIAS 484
Query: 257 ISMDR 261
S D+
Sbjct: 485 ASDDK 489
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 35/72 (48%)
Query: 15 DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFD 74
+++ +AS D WKK ++ E V H + S+ +G LL T + DK++ V++
Sbjct: 74 NYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWE 133
Query: 75 VINFDMINMIKL 86
V D + +
Sbjct: 134 VDEEDEYECVSV 145
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 96/241 (39%), Gaps = 24/241 (9%)
Query: 15 DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFD 74
+++ ++S D IK W + +F K H I + + + LL + + DK +K++D
Sbjct: 39 EWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 75 VINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDF 134
V + + +K V C ++ + VS V I+D K + +
Sbjct: 97 VSSGKCLKTLKGHSN--YVFCCNF--NPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHS 152
Query: 135 TPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIY 194
P V +H+ D + VS I+D +G L L PV +KF+P
Sbjct: 153 DP--VSAVHFNRDG--SLIVSSSYDGLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNG 207
Query: 195 QVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKF 254
+ +++ L+ W ++ KC+ + KN+ Y +FS G K+
Sbjct: 208 KYILAATLDNTLKLW-----DYSKGKCLK--------TYTGHKNEKYCIFANFSVTGGKW 254
Query: 255 V 255
+
Sbjct: 255 I 255
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 65/168 (38%), Gaps = 10/168 (5%)
Query: 42 FRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGD 101
H + S+ + NG L + ++DK +K++ +D + L + + + D
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA--YDGKFEKTISGHKLGISDVAWSSD 79
Query: 102 AIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSH 161
+ VS D + I+D + +K V C ++ + VS
Sbjct: 80 S--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNF--NPQSNLIVSGSFDES 133
Query: 162 VHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYW 209
V I+D K G L L H+ PV + FN ++VS G+ W
Sbjct: 134 VRIWDVK-TGMCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 15/81 (18%)
Query: 181 HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT 240
HTK V +KF+P + + S +++ W Y + KF K + + +K
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKFEKTI-------------SGHKL 69
Query: 241 YPSGLSFSPDGNKFVTISMDR 261
S +++S D N V+ S D+
Sbjct: 70 GISDVAWSSDSNLLVSASDDK 90
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 96/241 (39%), Gaps = 24/241 (9%)
Query: 15 DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFD 74
+++ ++S D IK W + +F K H I + + + LL + + DK +K++D
Sbjct: 39 EWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 75 VINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDF 134
V + + +K V C ++ + VS V I+D K + +
Sbjct: 97 VSSGKCLKTLKGHSN--YVFCCNF--NPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHS 152
Query: 135 TPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIY 194
P V +H+ D + VS I+D +G L L PV +KF+P
Sbjct: 153 DP--VSAVHFNRDG--SLIVSSSYDGLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNG 207
Query: 195 QVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKF 254
+ +++ L+ W ++ KC+ + KN+ Y +FS G K+
Sbjct: 208 KYILAATLDNDLKLW-----DYSKGKCLK--------TYTGHKNEKYCIFANFSVTGGKW 254
Query: 255 V 255
+
Sbjct: 255 I 255
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 15/81 (18%)
Query: 181 HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT 240
HTK V +KF+P + + S +++ W Y + KF K + + +K
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKFEKTI-------------SGHKL 69
Query: 241 YPSGLSFSPDGNKFVTISMDR 261
S +++S D N V+ S D+
Sbjct: 70 GISDVAWSSDSNLLVSASDDK 90
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 65/168 (38%), Gaps = 10/168 (5%)
Query: 42 FRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGD 101
H + S+ + NG L + ++DK +K++ +D + L + + + D
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA--YDGKFEKTISGHKLGISDVAWSSD 79
Query: 102 AIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSH 161
+ VS D + I+D + +K V C ++ + VS
Sbjct: 80 S--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNF--NPQSNLIVSGSFDES 133
Query: 162 VHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYW 209
V I+D K G L L H+ PV + FN ++VS G+ W
Sbjct: 134 VRIWDVK-TGMCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 44 SHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKL 86
SH +IH +Y GT L T +SD+++K+FDV N I + L
Sbjct: 11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADL 53
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 34.7 bits (78), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 17 VITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVI 76
+++ D IK W K +E + H G + +C Y+ ++ T +SD ++V+DV
Sbjct: 146 IVSGLRDNTIKIWDKNT--LECKRILTGHTGSV--LCLQYDERVIITGSSDSTVRVWDVN 201
Query: 77 NFDMINMI 84
+M+N +
Sbjct: 202 TGEMLNTL 209
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 88/197 (44%), Gaps = 16/197 (8%)
Query: 14 TDFVITASNDGHIKFWKKQEEGIEFVKHFRSH-LGVIHSICTNYNGTLLCTVASDKAMKV 72
++ V+T S D +K WK ++E ++ H LGV+ S+ ++ + + + D +++
Sbjct: 48 SETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVV-SVDISHTLPIAASSSLDAHIRL 106
Query: 73 FDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKL 132
+D+ N I I D P+ + + D+ A + +V+I+ + L
Sbjct: 107 WDLENGKQIKSI--DAGPVDAWTLAFSPDSQYLA--TGTHVGKVNIFGVESGK--KEYSL 160
Query: 133 DFTPLTVECIHYLGDA--IPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKF 190
D + I Y D + + A+ ++I+D G LH L+ H P+ + F
Sbjct: 161 DTRGKFILSIAYSPDGKYLASGAI----DGIINIFDI-ATGKLLHTLEG-HAMPIRSLTF 214
Query: 191 NPIYQVVVSVDKAGILE 207
+P Q++V+ G ++
Sbjct: 215 SPDSQLLVTASDDGYIK 231
>pdb|3VU4|A Chain A, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
pdb|3VU4|B Chain B, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
Length = 355
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 2 HRSPITHVVVT-KTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNY--NG 58
H +PI V + K+D V T S DG I K E+G+ V+ FR L + + +G
Sbjct: 194 HTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV-LVREFRRGLDRADVVDMKWSTDG 252
Query: 59 TLLCTVASDKAMKVFDVIN 77
+ L V+ + VF++ N
Sbjct: 253 SKLAVVSDKWTLHVFEIFN 271
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/140 (20%), Positives = 63/140 (45%), Gaps = 12/140 (8%)
Query: 2 HRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLL 61
H+ + + + +++ S DG +K W IE + F H G + S + + T
Sbjct: 1050 HQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIE--RDFTCHQGTVLSCAISSDATKF 1107
Query: 62 CTVASDKAMKVFDVINFDMINMI-KLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYD 120
+ ++DK K++ +FD+++ + +L V C + D I A + D+ + I++
Sbjct: 1108 SSTSADKTAKIW---SFDLLSPLHELKGHNGCVRCSAFSLDGILLA--TGDDNGEIRIWN 1162
Query: 121 CKGNDMINMIKLDFTPLTVE 140
+++ P++VE
Sbjct: 1163 VSDGQLLHSC----APISVE 1178
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 32/167 (19%), Positives = 62/167 (37%), Gaps = 8/167 (4%)
Query: 43 RSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDA 102
R H ++ C + +G + + +DK ++VF + + IK V C + D
Sbjct: 619 RPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDE--VLCCAFSSDD 676
Query: 103 IPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHV 162
A S +V I+D +++ D V C H+ + + + +
Sbjct: 677 SYIATCS--ADKKVKIWDSATGKLVHT--YDEHSEQVNCCHFTNKSNHLLLATGSNDFFL 732
Query: 163 HIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYW 209
++D + HT V +F+P +++ S G L W
Sbjct: 733 KLWDLNQKECRNTMFG--HTNSVNHCRFSPDDELLASCSADGTLRLW 777
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/140 (20%), Positives = 63/140 (45%), Gaps = 12/140 (8%)
Query: 2 HRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLL 61
H+ + + + +++ S DG +K W IE + F H G + S + + T
Sbjct: 1043 HQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIE--RDFTCHQGTVLSCAISSDATKF 1100
Query: 62 CTVASDKAMKVFDVINFDMINMI-KLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYD 120
+ ++DK K++ +FD+++ + +L V C + D I A + D+ + I++
Sbjct: 1101 SSTSADKTAKIW---SFDLLSPLHELKGHNGCVRCSAFSLDGILLA--TGDDNGEIRIWN 1155
Query: 121 CKGNDMINMIKLDFTPLTVE 140
+++ P++VE
Sbjct: 1156 VSDGQLLHSC----APISVE 1171
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 32/167 (19%), Positives = 62/167 (37%), Gaps = 8/167 (4%)
Query: 43 RSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDA 102
R H ++ C + +G + + +DK ++VF + + IK V C + D
Sbjct: 612 RPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDE--VLCCAFSSDD 669
Query: 103 IPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHV 162
A S +V I+D +++ D V C H+ + + + +
Sbjct: 670 SYIATCS--ADKKVKIWDSATGKLVHT--YDEHSEQVNCCHFTNKSNHLLLATGSNDFFL 725
Query: 163 HIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYW 209
++D + HT V +F+P +++ S G L W
Sbjct: 726 KLWDLNQKECRNTMFG--HTNSVNHCRFSPDDELLASCSADGTLRLW 770
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 22/105 (20%)
Query: 2 HRSPITHVVVT-KTDFVI-TASNDGHIKFW----------------KKQEEGIEFVKHFR 43
HR I V + + D+++ TAS D +K W K+ + +E
Sbjct: 185 HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESAN--T 242
Query: 44 SHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD--MINMIKL 86
+H G ++ +C +G L TV +D M++++ N + ++N K+
Sbjct: 243 AHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKV 287
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 30.4 bits (67), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 2 HRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHF-----RSHLGVIHSICTNY 56
H+S +T + K +FVIT+S+DG +K W + EF+++ GV+ I +
Sbjct: 361 HQSAVTCLQFNK-NFVITSSDDGTVKLWDLKTG--EFIRNLVTLESGGSGGVVWRIRAS- 416
Query: 57 NGTLLCTVASDKAMKVFDVINFD 79
N L+C V S + ++ D
Sbjct: 417 NTKLVCAVGSRNGTEETKLLVLD 439
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 44 SHLGVIHSICTNYNGTLLCTVASDKAMKVFDV 75
+H +IH +Y G L T +SDK +K+F+V
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEV 38
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 80/204 (39%), Gaps = 19/204 (9%)
Query: 2 HRSPITHVVVTKT-DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTL 60
H P+T V K D + + S D W E + H G I SI +
Sbjct: 31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG--ERLGTLDGHTGTIWSIDVDCFTKY 88
Query: 61 LCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSD---QDSSRVH 117
T ++D ++K++DV N + K +P+ V+ + + A+ D ++ ++
Sbjct: 89 CVTGSADYSIKLWDVSNGQCVATWK---SPVPVKRVEFSPCGNYFLAILDNVMKNPGSIN 145
Query: 118 IYDCKGNDMI-NMIKLDFTPLTVECIHYLGDAIPTAA--------VSDQDSSHVHIYDCK 168
IY+ + + + K+ P+ H DA A ++ + YD
Sbjct: 146 IYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVS 205
Query: 169 GNGTPLHVLDRLHTKPVVLIKFNP 192
N + +D LH K + ++F+P
Sbjct: 206 NNYEYVDSID-LHEKSISDMQFSP 228
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/140 (20%), Positives = 63/140 (45%), Gaps = 12/140 (8%)
Query: 2 HRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLL 61
H+ + + K +++ S DG +K W E K F H G + S +++ T
Sbjct: 1049 HQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKE--KDFVCHQGTVLSCDISHDATKF 1106
Query: 62 CTVASDKAMKVFDVINFD-MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYD 120
+ ++DK K++ +FD ++ + +L V C + D+ T + D+ + I++
Sbjct: 1107 SSTSADKTAKIW---SFDLLLPLHELRGHNGCVRCSAFSVDS--TLLATGDDNGEIRIWN 1161
Query: 121 CKGNDMINMIKLDFTPLTVE 140
+++++ PL+ E
Sbjct: 1162 VSNGELLHLC----APLSEE 1177
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 44 SHLGVIHSICTNYNGTLLCTVASDKAMKVFDV 75
+H +IH +Y G L T +SDK +K+F+V
Sbjct: 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEV 40
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 44 SHLGVIHSICTNYNGTLLCTVASDKAMKVFDV 75
+H +IH +Y G L T +SDK +K+F+V
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEV 38
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 23 DGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINF 78
DG +K W + F++H ++ + + NG + T DK + ++D++N
Sbjct: 193 DGRLKVWNTN---FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNL 245
>pdb|1VSY|4 Chain 4, Proteasome Activator Complex
pdb|1VSY|7 Chain 7, Proteasome Activator Complex
pdb|3L5Q|5 Chain 5, Proteasome Activator Complex
pdb|3L5Q|7 Chain 7, Proteasome Activator Complex
Length = 799
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 21/122 (17%)
Query: 18 ITASNDGHIKFWKKQEEGI--EFVKHFRSHLGVIHSICTN--YNGTLLCTVASDKAMKVF 73
I SN+G FW K F+K + + IC NG L + ++ +++F
Sbjct: 284 IHPSNNG---FWTKPNAKFVHAFIKSYHGRVKYEEDICARGVTNGICLTSFCHEEIVEIF 340
Query: 74 DVINFDMINMIKL-------DFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDM 126
+N+I L D + C YL + P+ A D + +YD +
Sbjct: 341 -------LNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQF 393
Query: 127 IN 128
IN
Sbjct: 394 IN 395
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/79 (20%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 2 HRSPITHVVVT--KTDFVITASNDGHIKFWKKQEEGIEF---VKHFRSHLGVIHSICTNY 56
H +T + + + + +++AS D + WK + +F V+ F+ H ++
Sbjct: 10 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 69
Query: 57 NGTLLCTVASDKAMKVFDV 75
+G + + DK ++++DV
Sbjct: 70 DGAYALSASWDKTLRLWDV 88
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 17 VITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDV 75
+I+A ND +K W + IE F H I+++ + +GTL+ + D + ++++
Sbjct: 163 IISAGNDKMVKAWNLNQFQIE--ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 219
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 17 VITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDV 75
+I+A ND +K W + IE F H I+++ + +GTL+ + D + ++++
Sbjct: 169 IISAGNDKXVKAWNLNQFQIE--ADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNL 225
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/79 (20%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 2 HRSPITHVVVT--KTDFVITASNDGHIKFWKKQEEGIEF---VKHFRSHLGVIHSICTNY 56
H +T + + + + +++AS D + WK + +F V+ F+ H ++
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 75
Query: 57 NGTLLCTVASDKAMKVFDV 75
+G + + DK ++++DV
Sbjct: 76 DGAYALSASWDKTLRLWDV 94
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/79 (20%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 2 HRSPITHVVVT--KTDFVITASNDGHIKFWKKQEEGIEF---VKHFRSHLGVIHSICTNY 56
H +T + + + + +++AS D + WK + +F V+ F+ H ++
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 75
Query: 57 NGTLLCTVASDKAMKVFDV 75
+G + + DK ++++DV
Sbjct: 76 DGAYALSASWDKTLRLWDV 94
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 17 VITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDV 75
+I+A ND +K W + IE F H I+++ + +GTL+ + D + ++++
Sbjct: 169 IISAGNDKMVKAWNLNQFQIE--ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins
Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s
Subunit Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s
Subunit Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/79 (20%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 2 HRSPITHVVVT--KTDFVITASNDGHIKFWKKQEEGIEF---VKHFRSHLGVIHSICTNY 56
H +T + + + + +++AS D + WK + +F V+ F+ H ++
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 75
Query: 57 NGTLLCTVASDKAMKVFDV 75
+G + + DK ++++DV
Sbjct: 76 DGAYALSASWDKTLRLWDV 94
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 17 VITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDV 75
+I+A ND +K W + IE F H I+++ + +GTL+ + D + ++++
Sbjct: 169 IISAGNDKMVKAWNLNQFQIE--ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space
Group P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space
Group P63
Length = 319
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/79 (20%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 2 HRSPITHVVVT--KTDFVITASNDGHIKFWKKQEEGIEF---VKHFRSHLGVIHSICTNY 56
H +T + + + + +++AS D + WK + +F V+ F+ H ++
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 75
Query: 57 NGTLLCTVASDKAMKVFDV 75
+G + + DK ++++DV
Sbjct: 76 DGAYALSASWDKTLRLWDV 94
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 17 VITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDV 75
+I+A ND +K W + IE F H I+++ + +GTL+ + D + ++++
Sbjct: 169 IISAGNDKMVKAWNLNQFQIE--ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space
Group P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space
Group P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space
Group P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space
Group P21
Length = 319
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/79 (20%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 2 HRSPITHVVVT--KTDFVITASNDGHIKFWKKQEEGIEF---VKHFRSHLGVIHSICTNY 56
H +T + + + + +++AS D + WK + +F V+ F+ H ++
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 75
Query: 57 NGTLLCTVASDKAMKVFDV 75
+G + + DK ++++DV
Sbjct: 76 DGAYALSASWDKTLRLWDV 94
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 17 VITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDV 75
+I+A ND +K W + IE F H I+++ + +GTL+ + D + ++++
Sbjct: 169 IISAGNDKMVKAWNLNQFQIE--ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 44 SHLGVIHSICTNYNGTLLCTVASDKAMKVFDV 75
+H +IH +Y G + T +SDK +K+F+V
Sbjct: 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEV 38
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 14/114 (12%)
Query: 150 PTAAVSDQDSSHVHIYDCKGNGTPLHVLDRL--HTKPVVLIKFNPIYQVVVSVDKAGILE 207
P +S D + V I++ G P HTK V +++NP + S G +
Sbjct: 160 PFRIISGSDDNTVAIFE----GPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIV 215
Query: 208 YWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR 261
++G K FE D L A + + GL++SPDG K + S D+
Sbjct: 216 LYNGVDGT----KTGVFE---DDSLKNVAHSGSV-FGLTWSPDGTKIASASADK 261
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 14 TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVF 73
T ++ + D K W +E + F H I++IC NG T + D ++F
Sbjct: 207 TRLFVSGACDASAKLWDVREGMCR--QTFTGHESDINAICFFPNGNAFATGSDDATCRLF 264
Query: 74 DV 75
D+
Sbjct: 265 DL 266
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 14 TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVF 73
T ++ + D K W +E + F H I++IC NG T + D ++F
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCR--QTFTGHESDINAICFFPNGNAFATGSDDATCRLF 253
Query: 74 DV 75
D+
Sbjct: 254 DL 255
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 14 TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVF 73
T ++ + D K W +E + F H I++IC NG T + D ++F
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCR--QTFTGHESDINAICFFPNGNAFATGSDDATCRLF 253
Query: 74 DV 75
D+
Sbjct: 254 DL 255
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 14 TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVF 73
T ++ + D K W +E + F H I++IC NG T + D ++F
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCR--QTFTGHESDINAICFFPNGNAFATGSDDATCRLF 253
Query: 74 DV 75
D+
Sbjct: 254 DL 255
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 14 TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVF 73
T ++ + D K W +E + F H I++IC NG T + D ++F
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCR--QTFTGHESDINAICFFPNGNAFATGSDDATCRLF 253
Query: 74 DV 75
D+
Sbjct: 254 DL 255
>pdb|3MX6|A Chain A, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii Bound To Methionine
pdb|3MX6|B Chain B, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii Bound To Methionine
Length = 262
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 47 GVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGD 101
G SICT+ N + + +DK +K D++N D+ + LD ++Y+GD
Sbjct: 66 GFPKSICTSINHVVCHGIPNDKPLKNGDIVNIDV--TVILDGWYGDTSRMYYVGD 118
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 44 SHLGVIHSICTNYNGTLLCTVASDKAMKVFDV 75
+H IH +Y G T +SDK +K+F+V
Sbjct: 7 AHNEXIHDAVXDYYGKRXATCSSDKTIKIFEV 38
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 2 HRSPITHVVVTKTDFVITASN-DGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGT- 59
H + HV+ ++ ++ +S+ D ++ WK ++ E V H G + S ++++ T
Sbjct: 152 HSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWS--SDFDKTE 209
Query: 60 ---LLCTVASDKAMKVFDVINFD 79
LC+ + D ++V+ + D
Sbjct: 210 GVFRLCSGSDDSTVRVWKYMGDD 232
>pdb|3MR1|A Chain A, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|B Chain B, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|C Chain C, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|D Chain D, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
Length = 252
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 47 GVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGD 101
G SICT+ N + + +DK +K D++N D+ + LD ++Y+GD
Sbjct: 66 GFPKSICTSINHVVCHGIPNDKPLKNGDIVNIDV--TVILDGWYGDTSRMYYVGD 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,418,383
Number of Sequences: 62578
Number of extensions: 365220
Number of successful extensions: 903
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 808
Number of HSP's gapped (non-prelim): 127
length of query: 261
length of database: 14,973,337
effective HSP length: 97
effective length of query: 164
effective length of database: 8,903,271
effective search space: 1460136444
effective search space used: 1460136444
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)