Query psy6859
Match_columns 261
No_of_seqs 648 out of 1464
Neff 12.0
Searched_HMMs 29240
Date Fri Aug 16 20:13:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6859.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6859hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gqb_B Methylosome protein 50; 100.0 1.1E-46 3.8E-51 287.9 30.6 238 2-261 81-322 (344)
2 3ow8_A WD repeat-containing pr 100.0 2.2E-45 7.5E-50 278.7 31.7 236 1-261 30-270 (321)
3 3ow8_A WD repeat-containing pr 100.0 1.8E-45 6.2E-50 279.2 31.2 234 1-261 78-312 (321)
4 2ynn_A Coatomer subunit beta'; 100.0 2.4E-45 8.2E-50 276.7 31.4 236 1-261 11-250 (304)
5 1vyh_C Platelet-activating fac 100.0 1.5E-45 5E-50 288.7 30.3 234 1-261 106-360 (410)
6 1vyh_C Platelet-activating fac 100.0 1.7E-45 5.7E-50 288.4 29.9 236 1-261 148-402 (410)
7 1got_B GT-beta; complex (GTP-b 100.0 6.9E-44 2.4E-48 272.8 33.3 248 1-261 53-334 (340)
8 2pm7_B Protein transport prote 100.0 4.1E-44 1.4E-48 269.1 31.3 243 1-261 7-276 (297)
9 4g56_B MGC81050 protein; prote 100.0 1E-44 3.5E-49 278.9 27.5 238 1-261 92-334 (357)
10 2pbi_B Guanine nucleotide-bind 100.0 1.8E-43 6.3E-48 271.7 32.5 251 1-261 62-348 (354)
11 2ynn_A Coatomer subunit beta'; 100.0 1.8E-43 6E-48 266.5 31.7 237 1-261 53-294 (304)
12 4ery_A WD repeat-containing pr 100.0 2.5E-42 8.5E-47 261.2 33.9 248 1-259 21-299 (312)
13 2xzm_R RACK1; ribosome, transl 100.0 5.1E-42 1.7E-46 262.8 33.5 254 1-261 19-331 (343)
14 3frx_A Guanine nucleotide-bind 100.0 2E-42 6.9E-47 262.4 30.5 235 1-260 15-258 (319)
15 3iz6_a 40S ribosomal protein R 100.0 5.1E-43 1.8E-47 271.8 27.5 252 1-261 64-366 (380)
16 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.1E-42 1.4E-46 263.4 32.1 253 1-261 13-274 (345)
17 3bg1_A Protein SEC13 homolog; 100.0 3.8E-43 1.3E-47 266.1 25.6 244 1-261 11-284 (316)
18 3fm0_A Protein CIAO1; WDR39,SG 100.0 9.3E-42 3.2E-46 261.5 31.3 249 1-261 59-326 (345)
19 4aow_A Guanine nucleotide-bind 100.0 2.9E-41 1E-45 258.0 34.0 254 1-261 36-328 (340)
20 3frx_A Guanine nucleotide-bind 100.0 1E-40 3.5E-45 253.1 31.8 239 1-261 63-308 (319)
21 1erj_A Transcriptional repress 100.0 6E-41 2E-45 261.3 31.0 231 5-261 125-380 (393)
22 1nr0_A Actin interacting prote 100.0 2.8E-41 9.5E-46 276.9 30.5 250 1-261 57-346 (611)
23 2hes_X YDR267CP; beta-propelle 100.0 6.4E-41 2.2E-45 255.3 30.0 240 1-261 56-319 (330)
24 3jrp_A Fusion protein of prote 100.0 8.8E-41 3E-45 258.9 30.8 243 1-261 9-278 (379)
25 2hes_X YDR267CP; beta-propelle 100.0 1.2E-40 4.2E-45 253.8 30.9 242 1-261 12-271 (330)
26 1erj_A Transcriptional repress 100.0 6.8E-41 2.3E-45 261.0 30.1 245 1-261 62-332 (393)
27 3zwl_B Eukaryotic translation 100.0 2.5E-40 8.5E-45 255.4 31.4 250 1-261 30-337 (369)
28 1nr0_A Actin interacting prote 100.0 3.3E-40 1.1E-44 270.5 31.6 238 1-261 145-513 (611)
29 3dm0_A Maltose-binding peripla 100.0 4.7E-40 1.6E-44 273.5 32.8 255 1-261 380-684 (694)
30 3mmy_A MRNA export factor; mRN 100.0 8.5E-40 2.9E-44 252.3 31.3 239 1-261 37-337 (368)
31 4gqb_B Methylosome protein 50; 100.0 2.5E-40 8.6E-45 252.8 26.5 236 1-261 28-280 (344)
32 2ymu_A WD-40 repeat protein; u 100.0 8.5E-40 2.9E-44 266.6 31.1 229 1-261 342-571 (577)
33 3f3f_A Nucleoporin SEH1; struc 100.0 2.1E-39 7E-44 248.2 30.7 253 1-261 9-328 (351)
34 3dwl_C Actin-related protein 2 100.0 2.2E-41 7.6E-46 262.4 18.9 236 2-261 10-273 (377)
35 4g56_B MGC81050 protein; prote 100.0 7.4E-40 2.5E-44 251.9 26.9 237 1-261 40-292 (357)
36 4e54_B DNA damage-binding prot 100.0 7.5E-40 2.6E-44 258.4 26.9 251 1-260 117-421 (435)
37 1sq9_A Antiviral protein SKI8; 100.0 1.5E-39 5E-44 253.8 26.5 236 1-261 14-313 (397)
38 2j04_B YDR362CP, TAU91; beta p 100.0 5.7E-40 2E-44 262.6 23.5 252 1-261 205-508 (524)
39 3jro_A Fusion protein of prote 100.0 3.7E-39 1.3E-43 269.7 29.1 243 1-261 7-276 (753)
40 1k8k_C P40, ARP2/3 complex 41 100.0 1.4E-38 4.7E-43 246.1 30.1 238 1-261 6-265 (372)
41 3ei3_B DNA damage-binding prot 100.0 3.5E-38 1.2E-42 245.0 32.3 248 1-261 71-373 (383)
42 1gxr_A ESG1, transducin-like e 100.0 7E-38 2.4E-42 238.9 32.3 233 1-261 95-328 (337)
43 2ymu_A WD-40 repeat protein; u 100.0 3.3E-38 1.1E-42 257.3 31.9 229 1-261 301-530 (577)
44 1got_B GT-beta; complex (GTP-b 100.0 2.3E-38 7.9E-43 242.2 27.1 200 1-210 141-340 (340)
45 4a11_B DNA excision repair pro 100.0 1.8E-37 6.3E-42 242.4 32.2 252 1-261 41-356 (408)
46 1gxr_A ESG1, transducin-like e 100.0 1E-37 3.5E-42 238.0 29.6 233 1-261 49-287 (337)
47 2pm9_A Protein WEB1, protein t 100.0 3.6E-38 1.2E-42 247.3 26.9 240 1-261 65-328 (416)
48 4aez_A CDC20, WD repeat-contai 100.0 1.9E-37 6.6E-42 242.2 30.4 234 1-261 132-371 (401)
49 2pbi_B Guanine nucleotide-bind 100.0 1.5E-37 5.2E-42 238.8 27.4 200 1-210 152-354 (354)
50 1sq9_A Antiviral protein SKI8; 100.0 1E-37 3.5E-42 243.4 26.3 235 1-261 60-386 (397)
51 4gga_A P55CDC, cell division c 100.0 1.1E-36 3.7E-41 239.3 32.2 235 1-261 145-386 (420)
52 3mkq_A Coatomer beta'-subunit; 100.0 1.8E-37 6.1E-42 262.2 29.7 235 1-261 11-250 (814)
53 3k26_A Polycomb protein EED; W 100.0 1.7E-38 5.7E-43 245.0 21.4 237 2-261 68-357 (366)
54 1r5m_A SIR4-interacting protei 100.0 3.8E-37 1.3E-41 241.8 29.5 231 1-261 106-352 (425)
55 3i2n_A WD repeat-containing pr 100.0 1E-37 3.6E-42 239.8 25.0 250 1-261 63-344 (357)
56 3dw8_B Serine/threonine-protei 100.0 2.4E-37 8.3E-42 244.8 27.8 236 2-261 27-364 (447)
57 2xyi_A Probable histone-bindin 100.0 4.7E-37 1.6E-41 242.0 28.3 252 1-261 126-401 (430)
58 1k8k_C P40, ARP2/3 complex 41 100.0 9E-37 3.1E-41 235.9 29.2 249 1-261 50-352 (372)
59 3vl1_A 26S proteasome regulato 100.0 4.5E-37 1.5E-41 241.4 27.1 245 1-261 137-410 (420)
60 3odt_A Protein DOA1; ubiquitin 100.0 5.4E-36 1.8E-40 226.3 31.5 229 1-261 16-287 (313)
61 1yfq_A Cell cycle arrest prote 100.0 4.9E-37 1.7E-41 234.9 25.5 238 1-261 9-273 (342)
62 3vl1_A 26S proteasome regulato 100.0 2.1E-37 7.2E-42 243.3 24.1 232 6-261 100-356 (420)
63 3i2n_A WD repeat-containing pr 100.0 3.5E-37 1.2E-41 236.9 24.8 236 1-261 16-282 (357)
64 1yfq_A Cell cycle arrest prote 100.0 6.1E-37 2.1E-41 234.4 25.7 229 1-261 54-314 (342)
65 3sfz_A APAF-1, apoptotic pepti 100.0 1.6E-36 5.5E-41 266.5 31.8 237 1-261 613-904 (1249)
66 1r5m_A SIR4-interacting protei 100.0 1.7E-36 5.7E-41 238.1 28.4 247 1-261 147-416 (425)
67 3gre_A Serine/threonine-protei 100.0 2.3E-37 7.9E-42 244.4 23.3 251 1-261 61-350 (437)
68 4h5i_A Guanine nucleotide-exch 100.0 3E-36 1E-40 232.4 28.7 235 1-261 71-334 (365)
69 2aq5_A Coronin-1A; WD40 repeat 100.0 6.1E-37 2.1E-41 239.5 25.0 235 1-257 79-331 (402)
70 3k26_A Polycomb protein EED; W 100.0 5.7E-37 2E-41 236.4 24.2 249 1-261 16-309 (366)
71 2j04_B YDR362CP, TAU91; beta p 100.0 1.4E-37 4.9E-42 248.8 21.4 220 17-261 176-419 (524)
72 2pm9_A Protein WEB1, protein t 100.0 3.1E-37 1E-41 242.0 21.6 251 1-261 111-405 (416)
73 3v7d_B Cell division control p 100.0 1.2E-35 4E-40 236.3 30.9 230 1-261 119-372 (464)
74 3dwl_C Actin-related protein 2 100.0 7.7E-37 2.6E-41 236.9 21.4 201 1-213 53-281 (377)
75 4gq1_A NUP37; propeller, trans 100.0 3.6E-37 1.2E-41 239.9 19.4 225 14-261 101-381 (393)
76 3mkq_A Coatomer beta'-subunit; 100.0 1.3E-35 4.4E-40 250.9 30.0 234 1-260 53-293 (814)
77 4ggc_A P55CDC, cell division c 100.0 1.7E-34 5.6E-39 218.7 32.3 235 1-261 65-306 (318)
78 3v7d_B Cell division control p 100.0 8.7E-35 3E-39 231.3 30.5 230 1-261 160-412 (464)
79 3sfz_A APAF-1, apoptotic pepti 100.0 5.6E-35 1.9E-39 256.8 31.2 251 1-261 655-1025(1249)
80 3dw8_B Serine/threonine-protei 100.0 2.9E-35 1E-39 232.8 25.9 249 4-261 94-438 (447)
81 2oaj_A Protein SNI1; WD40 repe 100.0 4.2E-35 1.4E-39 248.7 28.4 231 1-260 15-297 (902)
82 3gre_A Serine/threonine-protei 100.0 1.7E-35 5.8E-40 233.7 23.8 251 1-261 109-431 (437)
83 1p22_A F-BOX/WD-repeat protein 100.0 1.2E-34 4.1E-39 228.7 28.5 232 1-261 171-405 (435)
84 1pgu_A Actin interacting prote 100.0 3.9E-34 1.3E-38 234.7 32.0 235 1-261 158-605 (615)
85 3iz6_a 40S ribosomal protein R 100.0 2.2E-35 7.6E-40 228.9 23.0 204 1-213 155-375 (380)
86 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.9E-34 1.7E-38 225.9 30.9 225 1-261 197-429 (445)
87 3vu4_A KMHSV2; beta-propeller 100.0 4.4E-34 1.5E-38 219.7 29.1 223 1-261 17-262 (355)
88 4aez_A CDC20, WD repeat-contai 100.0 2.8E-34 9.5E-39 224.4 27.6 225 6-261 96-327 (401)
89 2aq5_A Coronin-1A; WD40 repeat 100.0 1.4E-34 4.8E-39 226.1 25.5 234 6-261 37-290 (402)
90 1p22_A F-BOX/WD-repeat protein 100.0 8.7E-34 3E-38 223.8 29.9 225 1-261 131-356 (435)
91 4h5i_A Guanine nucleotide-exch 100.0 4.5E-34 1.5E-38 220.3 27.6 205 2-213 132-343 (365)
92 4ery_A WD repeat-containing pr 100.0 9.7E-34 3.3E-38 214.2 27.9 200 37-261 14-214 (312)
93 2pm7_B Protein transport prote 100.0 7E-34 2.4E-38 213.4 26.1 203 40-261 3-229 (297)
94 1pgu_A Actin interacting prote 100.0 4.5E-34 1.5E-38 234.4 27.3 233 1-261 16-274 (615)
95 3bg1_A Protein SEC13 homolog; 100.0 2.8E-34 9.4E-39 217.4 23.5 204 1-212 55-292 (316)
96 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.7E-33 5.8E-38 223.1 28.1 234 1-258 100-373 (450)
97 2xzm_R RACK1; ribosome, transl 100.0 5.1E-33 1.8E-37 212.9 28.7 200 1-214 74-286 (343)
98 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.2E-32 4.1E-37 217.9 30.7 223 1-261 116-339 (445)
99 2vdu_B TRNA (guanine-N(7)-)-me 100.0 5.1E-33 1.7E-37 220.3 27.0 233 3-261 4-330 (450)
100 2j04_A TAU60, YPL007P, hypothe 100.0 1.7E-33 5.8E-38 221.7 23.6 237 1-259 83-350 (588)
101 3f3f_A Nucleoporin SEH1; struc 100.0 6.3E-33 2.2E-37 212.2 26.4 207 1-213 55-337 (351)
102 3lrv_A PRE-mRNA-splicing facto 100.0 1.2E-33 4.1E-38 216.4 22.0 216 14-261 48-283 (343)
103 2j04_A TAU60, YPL007P, hypothe 100.0 3.3E-33 1.1E-37 220.0 23.4 226 3-261 15-289 (588)
104 4gga_A P55CDC, cell division c 100.0 6.4E-32 2.2E-36 212.2 29.5 205 1-213 187-395 (420)
105 2w18_A PALB2, fancn, partner a 100.0 1.3E-31 4.5E-36 198.9 27.9 233 6-261 42-348 (356)
106 4e54_B DNA damage-binding prot 100.0 5E-33 1.7E-37 219.5 21.5 202 39-261 112-318 (435)
107 3jrp_A Fusion protein of prote 100.0 6.8E-32 2.3E-36 208.9 25.2 206 37-261 2-231 (379)
108 3dm0_A Maltose-binding peripla 100.0 7.3E-32 2.5E-36 224.3 26.1 201 1-215 428-634 (694)
109 4aow_A Guanine nucleotide-bind 100.0 2.3E-31 8E-36 203.2 26.9 220 18-261 8-237 (340)
110 3ei3_B DNA damage-binding prot 100.0 1.5E-31 5.1E-36 207.7 25.3 203 37-261 64-273 (383)
111 3lrv_A PRE-mRNA-splicing facto 100.0 7.4E-32 2.5E-36 206.4 23.2 227 5-261 78-324 (343)
112 3vu4_A KMHSV2; beta-propeller 100.0 1.1E-30 3.8E-35 200.7 29.4 239 5-261 60-327 (355)
113 3bws_A Protein LP49; two-domai 100.0 1.2E-30 4.3E-35 205.6 30.0 235 1-261 167-423 (433)
114 2oaj_A Protein SNI1; WD40 repe 100.0 3.1E-32 1E-36 231.3 21.6 237 1-261 433-774 (902)
115 3jro_A Fusion protein of prote 100.0 1.1E-31 3.6E-36 224.8 24.3 205 1-213 51-285 (753)
116 2w18_A PALB2, fancn, partner a 100.0 2.6E-31 9E-36 197.3 23.6 183 22-211 155-355 (356)
117 2xyi_A Probable histone-bindin 100.0 6.4E-31 2.2E-35 207.1 25.9 207 1-214 179-411 (430)
118 3zwl_B Eukaryotic translation 100.0 1.8E-30 6E-35 200.2 27.1 200 37-261 23-240 (369)
119 4gq1_A NUP37; propeller, trans 100.0 2.5E-31 8.4E-36 207.1 21.7 202 1-211 134-387 (393)
120 1l0q_A Surface layer protein; 100.0 2.2E-29 7.4E-34 196.0 32.5 228 4-261 32-266 (391)
121 3odt_A Protein DOA1; ubiquitin 100.0 9.8E-30 3.4E-34 191.9 28.8 194 1-214 102-297 (313)
122 3mmy_A MRNA export factor; mRN 100.0 7.8E-31 2.7E-35 202.1 23.0 204 1-211 84-344 (368)
123 4a11_B DNA excision repair pro 100.0 3.8E-31 1.3E-35 206.6 21.1 229 22-261 21-267 (408)
124 4ggc_A P55CDC, cell division c 100.0 2.2E-29 7.6E-34 190.5 29.9 224 6-258 28-259 (318)
125 3bws_A Protein LP49; two-domai 100.0 2.1E-29 7.2E-34 198.6 26.6 227 4-259 123-364 (433)
126 1l0q_A Surface layer protein; 100.0 7.7E-28 2.6E-32 187.2 30.8 214 16-259 4-219 (391)
127 2ojh_A Uncharacterized protein 100.0 1E-26 3.4E-31 173.9 23.2 233 2-260 40-292 (297)
128 2hqs_A Protein TOLB; TOLB, PAL 100.0 3.9E-26 1.3E-30 178.8 26.9 221 1-252 176-410 (415)
129 2hqs_A Protein TOLB; TOLB, PAL 100.0 1E-26 3.5E-31 182.1 22.5 216 14-261 143-375 (415)
130 1ri6_A Putative isomerase YBHE 99.9 1.4E-24 4.7E-29 165.8 28.1 240 2-259 36-296 (343)
131 3hfq_A Uncharacterized protein 99.9 3.9E-24 1.3E-28 163.8 28.2 238 4-260 40-306 (347)
132 1nir_A Nitrite reductase; hemo 99.9 2.8E-24 9.4E-29 173.3 28.5 235 6-258 181-439 (543)
133 3vgz_A Uncharacterized protein 99.9 3.5E-23 1.2E-27 158.7 29.5 229 5-260 90-334 (353)
134 2ecf_A Dipeptidyl peptidase IV 99.9 9.3E-25 3.2E-29 183.0 21.9 232 3-261 36-358 (741)
135 3u4y_A Uncharacterized protein 99.9 2.2E-23 7.4E-28 158.6 27.2 237 4-260 41-293 (331)
136 3u4y_A Uncharacterized protein 99.9 8.9E-23 3.1E-27 155.2 28.9 220 10-258 4-239 (331)
137 2ojh_A Uncharacterized protein 99.9 1.6E-23 5.5E-28 156.4 24.4 218 19-260 17-237 (297)
138 1nir_A Nitrite reductase; hemo 99.9 2.9E-23 9.9E-28 167.4 25.8 222 10-258 144-389 (543)
139 3o4h_A Acylamino-acid-releasin 99.9 5.2E-24 1.8E-28 173.9 21.6 224 3-261 21-267 (582)
140 1xfd_A DIP, dipeptidyl aminope 99.9 4.2E-24 1.4E-28 178.6 18.0 227 5-257 18-323 (723)
141 2z3z_A Dipeptidyl aminopeptida 99.9 3.3E-23 1.1E-27 172.8 23.1 235 4-260 82-376 (706)
142 2oit_A Nucleoporin 214KDA; NH2 99.9 5.8E-23 2E-27 161.5 23.2 200 3-214 36-279 (434)
143 3vgz_A Uncharacterized protein 99.9 3.9E-22 1.3E-26 152.9 27.1 228 4-258 41-290 (353)
144 2ecf_A Dipeptidyl peptidase IV 99.9 2.3E-23 8E-28 174.6 20.8 235 5-259 110-399 (741)
145 1jmx_B Amine dehydrogenase; ox 99.9 1.1E-22 3.8E-27 155.6 21.2 223 8-261 4-316 (349)
146 1xfd_A DIP, dipeptidyl aminope 99.9 1.8E-22 6E-27 168.8 23.5 239 2-258 112-428 (723)
147 3scy_A Hypothetical bacterial 99.9 6.8E-21 2.3E-25 146.6 30.4 236 4-259 50-325 (361)
148 1pby_B Quinohemoprotein amine 99.9 8.8E-22 3E-26 149.8 24.7 219 15-261 2-301 (337)
149 1k32_A Tricorn protease; prote 99.9 1.1E-22 3.7E-27 176.2 21.9 222 5-260 246-492 (1045)
150 1ri6_A Putative isomerase YBHE 99.9 2E-21 6.9E-26 148.2 25.7 225 16-258 7-249 (343)
151 2z3z_A Dipeptidyl aminopeptida 99.9 2.9E-22 9.9E-27 167.1 22.0 235 2-259 119-420 (706)
152 1z68_A Fibroblast activation p 99.9 8.2E-23 2.8E-27 170.8 16.9 220 8-256 20-328 (719)
153 2oit_A Nucleoporin 214KDA; NH2 99.9 2.2E-22 7.7E-27 158.2 17.9 190 47-257 37-258 (434)
154 1k32_A Tricorn protease; prote 99.9 1.1E-21 3.9E-26 169.8 22.5 227 1-260 201-441 (1045)
155 1jof_A Carboxy-CIS,CIS-muconat 99.9 3.1E-20 1.1E-24 143.2 25.5 236 4-260 40-330 (365)
156 1pby_B Quinohemoprotein amine 99.9 1.3E-20 4.6E-25 143.3 21.1 192 5-213 83-310 (337)
157 3hfq_A Uncharacterized protein 99.9 4.1E-19 1.4E-23 135.9 27.4 206 2-212 84-316 (347)
158 4a5s_A Dipeptidyl peptidase 4 99.9 2.5E-20 8.5E-25 156.2 22.4 235 4-259 17-339 (740)
159 3pe7_A Oligogalacturonate lyas 99.9 7.6E-19 2.6E-23 136.4 25.9 199 9-215 41-275 (388)
160 3scy_A Hypothetical bacterial 99.9 2.5E-18 8.7E-23 132.2 28.5 228 15-260 14-279 (361)
161 1q7f_A NHL, brain tumor CG1071 99.9 4.9E-18 1.7E-22 126.5 28.3 230 1-260 27-270 (286)
162 3fvz_A Peptidyl-glycine alpha- 99.9 2.7E-18 9.2E-23 130.5 27.3 233 4-260 24-312 (329)
163 1jmx_B Amine dehydrogenase; ox 99.9 6.4E-19 2.2E-23 134.7 23.5 192 5-213 44-325 (349)
164 3o4h_A Acylamino-acid-releasin 99.8 1.1E-19 3.9E-24 148.4 19.8 222 4-260 65-302 (582)
165 2dg1_A DRP35, lactonase; beta 99.8 8.3E-17 2.8E-21 122.4 30.2 233 2-260 43-300 (333)
166 2oiz_A Aromatic amine dehydrog 99.8 1.1E-17 3.6E-22 128.6 24.1 222 8-252 54-360 (361)
167 3e5z_A Putative gluconolactona 99.8 1.6E-16 5.6E-21 118.8 27.3 228 4-261 28-278 (296)
168 3c5m_A Oligogalacturonate lyas 99.8 1.9E-18 6.4E-23 134.4 16.6 228 5-258 37-301 (396)
169 1z68_A Fibroblast activation p 99.8 2.2E-18 7.6E-23 144.1 17.7 229 5-259 61-375 (719)
170 3no2_A Uncharacterized protein 99.8 8.1E-17 2.8E-21 119.0 23.9 187 12-214 3-196 (276)
171 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.3E-16 4.6E-21 122.8 25.6 228 16-259 4-274 (365)
172 3dsm_A Uncharacterized protein 99.8 2.8E-16 9.7E-21 119.2 26.8 223 5-257 45-285 (328)
173 3azo_A Aminopeptidase; POP fam 99.8 2.2E-17 7.4E-22 136.8 20.9 235 1-259 21-313 (662)
174 3fvz_A Peptidyl-glycine alpha- 99.8 2.9E-16 1E-20 119.2 24.4 201 3-212 90-321 (329)
175 2xdw_A Prolyl endopeptidase; a 99.8 7.9E-16 2.7E-20 128.5 28.1 233 2-257 123-397 (710)
176 3pe7_A Oligogalacturonate lyas 99.8 1.1E-16 3.8E-21 124.2 21.2 205 30-259 16-257 (388)
177 4a5s_A Dipeptidyl peptidase 4 99.8 2.5E-16 8.6E-21 132.0 22.1 202 7-213 65-353 (740)
178 3c5m_A Oligogalacturonate lyas 99.8 3.9E-17 1.3E-21 127.0 16.0 226 8-260 85-371 (396)
179 2gop_A Trilobed protease; beta 99.8 1.7E-15 5.8E-20 115.8 24.6 216 5-260 60-320 (347)
180 3azo_A Aminopeptidase; POP fam 99.8 4.6E-16 1.6E-20 128.9 23.0 227 8-258 81-355 (662)
181 1rwi_B Serine/threonine-protei 99.7 4E-15 1.4E-19 109.7 24.9 227 5-260 25-254 (270)
182 2dg1_A DRP35, lactonase; beta 99.7 1.2E-15 4.1E-20 116.0 22.3 235 4-259 6-252 (333)
183 2oiz_A Aromatic amine dehydrog 99.7 7.9E-16 2.7E-20 118.2 21.1 209 22-259 29-324 (361)
184 1q7f_A NHL, brain tumor CG1071 99.7 5.7E-15 1.9E-19 109.9 24.5 196 2-212 75-279 (286)
185 2bkl_A Prolyl endopeptidase; m 99.7 1.1E-15 3.9E-20 127.2 22.7 230 1-256 118-379 (695)
186 2gop_A Trilobed protease; beta 99.7 9.4E-15 3.2E-19 111.6 22.4 215 5-261 16-283 (347)
187 1pjx_A Dfpase, DIISOPROPYLFLUO 99.7 1.5E-13 5.1E-18 103.4 28.0 228 5-259 19-287 (314)
188 2z2n_A Virginiamycin B lyase; 99.7 1.3E-12 4.6E-17 97.4 31.5 225 3-257 14-242 (299)
189 1qks_A Cytochrome CD1 nitrite 99.7 1.5E-13 5.2E-18 111.0 27.4 190 14-214 167-374 (567)
190 2z2n_A Virginiamycin B lyase; 99.7 2.4E-12 8.1E-17 96.1 30.8 227 3-259 56-285 (299)
191 1xip_A Nucleoporin NUP159; bet 99.7 1.4E-14 4.9E-19 110.8 18.6 172 5-199 39-230 (388)
192 1qks_A Cytochrome CD1 nitrite 99.7 5.2E-13 1.8E-17 107.9 28.6 236 5-258 198-458 (567)
193 3g4e_A Regucalcin; six bladed 99.7 9.1E-13 3.1E-17 98.5 28.2 226 7-259 16-261 (297)
194 3hrp_A Uncharacterized protein 99.7 7.7E-13 2.6E-17 103.2 28.6 241 4-259 131-399 (409)
195 3dsm_A Uncharacterized protein 99.6 2.3E-13 8E-18 103.2 23.3 209 21-258 14-243 (328)
196 2xdw_A Prolyl endopeptidase; a 99.6 3.1E-13 1E-17 112.9 25.0 196 45-261 123-357 (710)
197 1rwi_B Serine/threonine-protei 99.6 3.4E-13 1.2E-17 99.3 21.6 196 4-213 67-264 (270)
198 2qc5_A Streptogramin B lactona 99.6 2.5E-11 8.5E-16 90.5 31.6 223 4-257 20-247 (300)
199 1yr2_A Prolyl oligopeptidase; 99.6 3.3E-13 1.1E-17 113.3 23.4 229 4-256 163-423 (741)
200 2ghs_A AGR_C_1268P; regucalcin 99.6 1.1E-11 3.6E-16 94.0 29.0 223 6-258 51-290 (326)
201 2qc5_A Streptogramin B lactona 99.6 2.3E-11 7.7E-16 90.8 30.6 225 4-257 62-289 (300)
202 1xip_A Nucleoporin NUP159; bet 99.6 2.8E-13 9.4E-18 103.8 19.6 172 48-256 39-230 (388)
203 2bkl_A Prolyl endopeptidase; m 99.6 5.6E-13 1.9E-17 111.1 22.8 228 13-261 77-340 (695)
204 2mad_H Methylamine dehydrogena 99.6 1.1E-11 3.7E-16 95.5 28.1 219 8-258 70-337 (373)
205 3e5z_A Putative gluconolactona 99.6 9.1E-13 3.1E-17 98.4 21.6 192 40-257 21-235 (296)
206 3iuj_A Prolyl endopeptidase; h 99.6 1.5E-12 5.3E-17 108.3 24.8 228 2-257 127-388 (693)
207 2ece_A 462AA long hypothetical 99.5 1.1E-11 3.8E-16 95.5 24.5 229 15-258 97-399 (462)
208 2qe8_A Uncharacterized protein 99.5 5.1E-12 1.7E-16 96.4 22.0 236 4-258 17-309 (343)
209 3no2_A Uncharacterized protein 99.5 1.4E-11 4.7E-16 91.0 23.4 179 5-201 38-231 (276)
210 3sjl_D Methylamine dehydrogena 99.5 7.5E-12 2.6E-16 95.6 20.9 221 8-257 82-349 (386)
211 3dr2_A Exported gluconolactona 99.5 3.2E-11 1.1E-15 90.5 24.3 226 5-260 46-297 (305)
212 2hz6_A Endoplasmic reticulum t 99.5 1.5E-14 5.3E-19 111.3 5.9 180 14-213 9-192 (369)
213 1yr2_A Prolyl oligopeptidase; 99.5 1.1E-11 3.8E-16 104.1 22.0 198 45-261 161-384 (741)
214 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 7.5E-11 2.6E-15 88.6 24.4 199 2-212 69-298 (314)
215 3c75_H MADH, methylamine dehyd 99.5 2.9E-11 1E-15 93.9 20.4 200 8-213 122-402 (426)
216 2iwa_A Glutamine cyclotransfer 99.4 8.2E-10 2.8E-14 80.1 24.5 193 37-258 10-224 (266)
217 3nol_A Glutamine cyclotransfer 99.4 8.6E-10 2.9E-14 79.1 24.3 192 37-259 32-244 (262)
218 3g4e_A Regucalcin; six bladed 99.4 4.6E-10 1.6E-14 83.9 24.1 189 3-201 53-260 (297)
219 3c75_H MADH, methylamine dehyd 99.4 6.7E-11 2.3E-15 91.9 19.0 103 24-132 99-218 (426)
220 2iwa_A Glutamine cyclotransfer 99.4 4.1E-09 1.4E-13 76.5 26.7 193 6-213 23-237 (266)
221 3sjl_D Methylamine dehydrogena 99.4 4.7E-10 1.6E-14 85.7 21.7 215 7-250 140-384 (386)
222 1fwx_A Nitrous oxide reductase 99.4 4.8E-10 1.6E-14 89.4 22.3 230 14-258 101-406 (595)
223 2mad_H Methylamine dehydrogena 99.4 2.3E-09 8E-14 82.5 25.5 184 14-213 32-243 (373)
224 1mda_H Methylamine dehydrogena 99.3 2.2E-10 7.5E-15 87.5 18.7 211 8-249 69-366 (368)
225 3mbr_X Glutamine cyclotransfer 99.3 9.2E-09 3.2E-13 73.2 25.2 201 37-259 10-223 (243)
226 3nok_A Glutaminyl cyclase; bet 99.3 3.8E-09 1.3E-13 75.9 22.5 181 6-201 57-253 (268)
227 3hrp_A Uncharacterized protein 99.3 1.8E-09 6E-14 84.3 22.5 198 48-258 132-341 (409)
228 3iuj_A Prolyl endopeptidase; h 99.3 2.9E-10 1E-14 94.7 18.8 195 45-259 127-345 (693)
229 3nok_A Glutaminyl cyclase; bet 99.3 5.9E-09 2E-13 74.8 22.2 191 37-258 44-253 (268)
230 3nol_A Glutamine cyclotransfer 99.3 9.5E-09 3.2E-13 73.8 23.0 181 7-201 46-243 (262)
231 1mda_H Methylamine dehydrogena 99.3 4.8E-10 1.6E-14 85.7 17.0 103 15-123 33-158 (368)
232 1kb0_A Quinohemoprotein alcoho 99.3 2.6E-09 8.7E-14 88.6 22.5 222 14-256 174-536 (677)
233 1yiq_A Quinohemoprotein alcoho 99.3 3E-09 1E-13 88.4 22.9 213 22-255 181-533 (689)
234 2ghs_A AGR_C_1268P; regucalcin 99.3 2.1E-08 7.1E-13 75.9 25.1 187 4-201 90-290 (326)
235 3mbr_X Glutamine cyclotransfer 99.2 2.7E-08 9.2E-13 70.8 23.3 182 6-201 23-222 (243)
236 3dr2_A Exported gluconolactona 99.2 3.3E-09 1.1E-13 79.5 19.7 187 3-204 85-298 (305)
237 1npe_A Nidogen, entactin; glyc 99.2 2.2E-07 7.6E-12 68.1 27.6 222 6-252 38-263 (267)
238 2hz6_A Endoplasmic reticulum t 99.2 4.7E-12 1.6E-16 97.5 2.3 143 57-215 8-151 (369)
239 1kb0_A Quinohemoprotein alcoho 99.2 1.1E-08 3.9E-13 84.8 22.4 157 14-178 128-354 (677)
240 3hxj_A Pyrrolo-quinoline quino 99.2 8.9E-09 3.1E-13 77.8 20.3 209 14-261 107-315 (330)
241 2qe8_A Uncharacterized protein 99.2 1.1E-08 3.6E-13 78.1 20.6 201 47-259 17-267 (343)
242 2p4o_A Hypothetical protein; p 99.2 4.1E-07 1.4E-11 68.1 29.2 226 5-259 33-277 (306)
243 2ece_A 462AA long hypothetical 99.1 1.2E-07 4.2E-12 73.4 23.7 198 56-259 93-340 (462)
244 1yiq_A Quinohemoprotein alcoho 99.1 4.5E-08 1.5E-12 81.4 21.7 156 14-177 121-345 (689)
245 3q7m_A Lipoprotein YFGL, BAMB; 99.1 2.3E-07 7.7E-12 71.6 23.6 181 14-214 103-297 (376)
246 3q7m_A Lipoprotein YFGL, BAMB; 99.1 1.6E-07 5.4E-12 72.4 22.3 180 14-213 143-337 (376)
247 3hxj_A Pyrrolo-quinoline quino 99.0 5.1E-09 1.7E-13 79.1 12.9 175 11-210 27-201 (330)
248 2fp8_A Strictosidine synthase; 99.0 2.1E-06 7.3E-11 64.7 25.9 197 6-211 21-267 (322)
249 1fwx_A Nitrous oxide reductase 98.9 1.5E-07 5.3E-12 75.3 18.2 196 5-214 135-432 (595)
250 1kv9_A Type II quinohemoprotei 98.9 1E-06 3.4E-11 73.1 23.5 159 51-213 234-488 (668)
251 1k3i_A Galactose oxidase precu 98.8 2.5E-06 8.4E-11 70.8 23.0 235 8-259 247-530 (656)
252 4a2l_A BT_4663, two-component 98.8 2.4E-05 8.1E-10 66.5 29.3 226 4-257 357-603 (795)
253 1npe_A Nidogen, entactin; glyc 98.8 1.2E-05 4E-10 58.9 27.0 189 16-213 3-198 (267)
254 2ad6_A Methanol dehydrogenase 98.8 6.2E-06 2.1E-10 67.1 24.0 187 52-257 240-524 (571)
255 4a2l_A BT_4663, two-component 98.8 4.6E-05 1.6E-09 64.7 28.8 228 4-256 215-468 (795)
256 1kv9_A Type II quinohemoprotei 98.7 3.3E-06 1.1E-10 70.1 20.5 156 14-177 117-340 (668)
257 3v65_B Low-density lipoprotein 98.7 3.6E-05 1.2E-09 59.5 26.5 198 5-213 117-318 (386)
258 3qqz_A Putative uncharacterize 98.7 2.7E-05 9.2E-10 56.2 25.0 195 41-256 21-240 (255)
259 1flg_A Protein (quinoprotein e 98.7 2.7E-05 9.1E-10 63.6 24.2 169 68-255 291-544 (582)
260 1w6s_A Methanol dehydrogenase 98.7 2.3E-05 8E-10 64.0 23.2 184 52-254 246-530 (599)
261 2ad6_A Methanol dehydrogenase 98.6 2.3E-05 7.9E-10 63.8 22.3 159 14-178 115-343 (571)
262 3v9f_A Two-component system se 98.6 0.0001 3.4E-09 62.5 26.5 226 4-256 313-555 (781)
263 2fp8_A Strictosidine synthase; 98.6 2.3E-05 7.8E-10 59.0 20.3 185 48-257 20-246 (322)
264 3v64_C Agrin; beta propeller, 98.6 8.7E-05 3E-09 56.6 28.0 198 5-213 74-275 (349)
265 3qqz_A Putative uncharacterize 98.6 6E-05 2.1E-09 54.4 23.6 196 4-210 27-250 (255)
266 3v9f_A Two-component system se 98.5 0.00017 5.9E-09 61.1 25.8 198 4-213 363-568 (781)
267 4hw6_A Hypothetical protein, I 98.5 0.00017 5.7E-09 56.7 26.3 199 5-211 140-372 (433)
268 1k3i_A Galactose oxidase precu 98.5 7.7E-05 2.6E-09 61.9 22.6 115 8-125 190-325 (656)
269 1w6s_A Methanol dehydrogenase 98.5 9.1E-05 3.1E-09 60.5 22.5 195 14-217 62-346 (599)
270 3v65_B Low-density lipoprotein 98.4 0.00025 8.7E-09 54.8 27.8 194 8-213 81-277 (386)
271 3amr_A 3-phytase; beta-propell 98.4 0.00022 7.5E-09 53.6 20.8 186 57-258 39-250 (355)
272 2xe4_A Oligopeptidase B; hydro 98.4 0.00011 3.8E-09 61.9 20.6 195 5-209 175-394 (751)
273 3v64_C Agrin; beta propeller, 98.4 0.00036 1.2E-08 53.1 29.7 196 6-213 36-234 (349)
274 3tc9_A Hypothetical hydrolase; 98.4 0.00048 1.6E-08 54.1 24.5 154 5-168 138-300 (430)
275 2xe4_A Oligopeptidase B; hydro 98.4 6.6E-05 2.3E-09 63.3 18.8 159 48-211 175-352 (751)
276 2p4o_A Hypothetical protein; p 98.3 0.00039 1.3E-08 51.9 21.0 188 5-204 73-279 (306)
277 3p5b_L Low density lipoprotein 98.3 0.00071 2.4E-08 52.6 28.1 186 16-213 85-277 (400)
278 3p5b_L Low density lipoprotein 98.2 0.00088 3E-08 52.0 28.7 203 4-214 112-321 (400)
279 1n7d_A LDL receptor, low-densi 98.2 2.5E-05 8.7E-10 65.1 13.3 200 6-213 408-614 (699)
280 3sov_A LRP-6, low-density lipo 98.2 0.00079 2.7E-08 50.5 27.4 200 6-214 37-239 (318)
281 1ijq_A LDL receptor, low-densi 98.2 0.00081 2.8E-08 50.4 29.7 179 24-213 10-195 (316)
282 1flg_A Protein (quinoprotein e 98.2 0.0015 5.3E-08 53.3 24.5 162 14-178 117-363 (582)
283 1ijq_A LDL receptor, low-densi 98.2 0.00087 3E-08 50.3 28.5 201 5-214 31-239 (316)
284 3m0c_C LDL receptor, low-densi 98.1 0.0029 9.9E-08 53.5 27.5 180 23-213 403-589 (791)
285 3m0c_C LDL receptor, low-densi 98.1 0.0032 1.1E-07 53.2 27.4 201 5-213 425-632 (791)
286 3tc9_A Hypothetical hydrolase; 98.1 0.00064 2.2E-08 53.4 17.8 156 49-212 139-300 (430)
287 2xbg_A YCF48-like protein; pho 98.0 0.0021 7.3E-08 48.4 25.3 227 4-261 80-313 (327)
288 2xbg_A YCF48-like protein; pho 98.0 0.0022 7.5E-08 48.3 22.3 191 4-210 122-319 (327)
289 1n7d_A LDL receptor, low-densi 98.0 0.00018 6.2E-09 60.1 14.0 180 23-213 385-571 (699)
290 2p9w_A MAL S 1 allergenic prot 98.0 0.0008 2.7E-08 50.2 15.8 162 45-212 11-214 (334)
291 3ii7_A Kelch-like protein 7; p 97.9 0.0031 1.1E-07 46.9 19.9 186 15-214 13-226 (306)
292 3sre_A PON1, serum paraoxonase 97.9 0.0039 1.3E-07 47.4 21.9 190 48-259 51-286 (355)
293 3kya_A Putative phosphatase; s 97.9 0.0055 1.9E-07 48.7 25.4 198 6-211 141-408 (496)
294 3amr_A 3-phytase; beta-propell 97.9 0.0044 1.5E-07 46.7 22.5 185 15-212 41-262 (355)
295 3sov_A LRP-6, low-density lipo 97.8 0.0057 1.9E-07 45.9 26.1 182 23-213 12-197 (318)
296 2vpj_A Kelch-like protein 12; 97.8 0.0053 1.8E-07 45.5 20.8 190 14-214 15-232 (301)
297 2ism_A Putative oxidoreductase 97.7 0.0075 2.6E-07 45.9 25.5 237 5-258 32-333 (352)
298 3pbp_A Nucleoporin NUP82; beta 97.7 0.0088 3E-07 46.2 18.5 148 97-258 29-198 (452)
299 3s94_A LRP-6, low-density lipo 97.7 0.014 4.7E-07 48.1 25.1 201 5-214 41-244 (619)
300 4a0p_A LRP6, LRP-6, low-densit 97.7 0.014 4.8E-07 48.2 28.3 198 5-214 38-238 (628)
301 2xn4_A Kelch-like protein 2; s 97.7 0.0084 2.9E-07 44.4 19.5 191 13-214 61-277 (302)
302 4hw6_A Hypothetical protein, I 97.7 0.012 4.2E-07 46.2 20.2 196 5-211 183-431 (433)
303 4a0p_A LRP6, LRP-6, low-densit 97.6 0.019 6.6E-07 47.4 28.3 189 14-213 6-197 (628)
304 4asc_A Kelch repeat and BTB do 97.6 0.013 4.4E-07 43.8 20.3 187 16-214 7-222 (315)
305 2xn4_A Kelch-like protein 2; s 97.6 0.012 4.2E-07 43.5 19.3 189 15-214 17-230 (302)
306 3ii7_A Kelch-like protein 7; p 97.5 0.014 4.6E-07 43.4 21.6 190 14-214 56-273 (306)
307 2vpj_A Kelch-like protein 12; 97.5 0.014 4.7E-07 43.2 19.4 186 14-213 63-278 (301)
308 1zgk_A Kelch-like ECH-associat 97.4 0.019 6.5E-07 42.7 20.5 190 14-214 25-241 (308)
309 2p9w_A MAL S 1 allergenic prot 97.4 0.022 7.4E-07 42.6 20.6 194 8-211 17-263 (334)
310 3a9g_A Putative uncharacterize 97.4 0.028 9.5E-07 42.8 27.7 235 5-258 30-330 (354)
311 3ott_A Two-component system se 97.2 0.077 2.6E-06 44.9 23.4 191 4-213 22-220 (758)
312 3pbp_A Nucleoporin NUP82; beta 97.2 0.053 1.8E-06 42.0 18.6 148 55-209 29-208 (452)
313 3sre_A PON1, serum paraoxonase 97.1 0.053 1.8E-06 41.2 23.4 196 7-211 53-296 (355)
314 1zgk_A Kelch-like ECH-associat 97.1 0.047 1.6E-06 40.6 18.4 186 14-213 71-287 (308)
315 3kya_A Putative phosphatase; s 97.1 0.077 2.6E-06 42.3 18.1 157 49-212 141-340 (496)
316 2uvk_A YJHT; unknown function, 97.1 0.061 2.1E-06 40.8 17.6 68 13-82 19-100 (357)
317 2woz_A Kelch repeat and BTB do 97.0 0.061 2.1E-06 40.1 18.7 187 16-214 18-232 (318)
318 2xzh_A Clathrin heavy chain 1; 96.9 0.074 2.5E-06 39.8 28.3 196 10-214 73-291 (365)
319 4asc_A Kelch repeat and BTB do 96.8 0.09 3.1E-06 39.1 17.7 107 14-126 46-177 (315)
320 2woz_A Kelch repeat and BTB do 96.8 0.093 3.2E-06 39.1 17.4 110 14-126 57-187 (318)
321 4gq2_M Nucleoporin NUP120; bet 96.8 0.077 2.6E-06 46.1 15.6 75 48-122 237-316 (950)
322 3ei3_A DNA damage-binding prot 96.6 0.35 1.2E-05 43.1 28.1 223 6-258 516-755 (1158)
323 3ei3_A DNA damage-binding prot 96.6 0.36 1.2E-05 43.0 24.8 136 69-212 808-954 (1158)
324 2uvk_A YJHT; unknown function, 96.3 0.25 8.4E-06 37.5 15.8 54 13-67 65-128 (357)
325 3s94_A LRP-6, low-density lipo 96.3 0.39 1.3E-05 39.6 27.7 159 47-213 349-510 (619)
326 2g8s_A Glucose/sorbosone dehyd 96.2 0.26 8.9E-06 37.5 25.2 62 183-256 271-339 (353)
327 2ism_A Putative oxidoreductase 96.2 0.1 3.4E-06 39.7 11.8 107 138-258 32-153 (352)
328 2zwa_A Leucine carboxyl methyl 96.2 0.45 1.5E-05 39.9 21.6 198 14-216 398-638 (695)
329 2be1_A Serine/threonine-protei 96.2 0.013 4.3E-07 44.3 6.5 114 14-133 10-140 (339)
330 1bpo_A Protein (clathrin); cla 95.9 0.46 1.6E-05 37.2 28.9 196 10-214 72-290 (494)
331 1xi4_A Clathrin heavy chain; a 95.9 0.77 2.6E-05 41.6 16.4 194 11-214 73-290 (1630)
332 3a9g_A Putative uncharacterize 95.6 0.15 5.1E-06 38.8 10.4 108 138-258 30-153 (354)
333 3das_A Putative oxidoreductase 95.6 0.51 1.8E-05 35.7 18.6 147 47-199 32-218 (347)
334 1tl2_A L10, protein (tachylect 95.6 0.097 3.3E-06 36.7 8.3 99 138-257 42-152 (236)
335 3sbq_A Nitrous-oxide reductase 95.4 0.11 3.7E-06 41.9 9.0 72 138-213 324-408 (638)
336 3s25_A Hypothetical 7-bladed b 95.3 0.63 2.2E-05 34.5 19.9 142 52-212 58-215 (302)
337 2be1_A Serine/threonine-protei 94.9 0.39 1.3E-05 36.2 10.4 110 60-178 12-138 (339)
338 3das_A Putative oxidoreductase 94.2 1.4 4.7E-05 33.4 27.9 236 5-258 33-326 (347)
339 4fhn_B Nucleoporin NUP120; pro 94.1 0.12 4.1E-06 46.0 6.9 39 48-86 239-277 (1139)
340 1bpo_A Protein (clathrin); cla 94.0 1.8 6E-05 34.0 27.0 176 22-213 46-235 (494)
341 1tl2_A L10, protein (tachylect 93.8 1.2 4E-05 31.4 16.1 179 14-211 4-206 (236)
342 3s25_A Hypothetical 7-bladed b 93.7 1.5 5.2E-05 32.4 20.9 161 24-212 88-254 (302)
343 3ott_A Two-component system se 93.4 3.2 0.00011 35.1 27.8 189 4-213 63-260 (758)
344 2xzh_A Clathrin heavy chain 1; 93.3 2 6.7E-05 32.4 24.9 200 4-212 107-331 (365)
345 1xi4_A Clathrin heavy chain; a 92.8 5.8 0.0002 36.4 16.0 201 4-211 106-329 (1630)
346 3f7f_A Nucleoporin NUP120; nuc 92.7 0.58 2E-05 39.0 8.3 73 49-124 224-306 (729)
347 1cru_A Protein (soluble quinop 92.5 3.2 0.00011 32.8 19.5 104 92-201 30-162 (454)
348 2zwa_A Leucine carboxyl methyl 91.3 5.9 0.0002 33.3 16.7 155 56-215 396-579 (695)
349 3sbq_A Nitrous-oxide reductase 89.7 2.7 9.1E-05 34.2 8.9 86 47-137 323-432 (638)
350 2g8s_A Glucose/sorbosone dehyd 89.3 5.8 0.0002 30.0 17.5 28 48-75 19-46 (353)
351 2wg3_C Hedgehog-interacting pr 88.3 8.2 0.00028 30.6 13.7 54 138-193 15-79 (463)
352 3zwu_A Alkaline phosphatase PH 83.5 5.1 0.00017 32.9 7.8 58 185-257 478-548 (592)
353 1cru_A Protein (soluble quinop 82.6 16 0.00055 28.8 26.9 61 5-65 28-98 (454)
354 3f7f_A Nucleoporin NUP120; nuc 81.8 7.6 0.00026 32.6 8.2 34 95-132 226-259 (729)
355 4a9v_A PHOX; hydrolase, beta-p 81.2 11 0.00036 30.9 8.6 61 183-258 476-549 (592)
356 3b7f_A Glycosyl hydrolase, BNR 79.7 18 0.00063 27.6 20.3 67 5-71 116-202 (394)
357 1q47_A Semaphorin 3A; beta pro 74.9 19 0.00063 28.9 8.4 70 139-208 406-487 (495)
358 4a9v_A PHOX; hydrolase, beta-p 73.7 23 0.00079 29.0 8.6 60 138-200 477-548 (592)
359 3al9_A Plexin-A2; beta-propell 71.4 13 0.00044 30.2 6.8 70 139-208 402-476 (539)
360 4gq2_M Nucleoporin NUP120; bet 70.4 10 0.00034 33.3 6.4 36 5-42 237-273 (950)
361 3zwu_A Alkaline phosphatase PH 69.6 22 0.00076 29.2 7.8 59 139-200 478-548 (592)
362 4gz8_A Semaphorin-3A; multi-do 64.9 28 0.00094 29.2 7.5 62 146-208 425-495 (667)
363 3q6k_A 43.2 kDa salivary prote 64.6 46 0.0016 25.6 23.1 139 69-213 124-306 (381)
364 3q6k_A 43.2 kDa salivary prote 62.6 51 0.0017 25.4 15.6 99 113-213 122-253 (381)
365 4fhn_B Nucleoporin NUP120; pro 59.5 11 0.00037 33.8 4.7 36 5-42 239-275 (1139)
366 3ol2_B Plexin-B1; beta-propell 58.8 58 0.002 26.4 8.2 71 139-209 389-462 (528)
367 1olz_A Semaphorin 4D; developm 53.4 55 0.0019 27.4 7.5 59 150-208 415-477 (663)
368 3nvq_A Semaphorin-7A; beta-pro 51.7 65 0.0022 26.5 7.5 61 149-209 379-445 (590)
369 3al9_A Plexin-A2; beta-propell 45.7 89 0.003 25.4 7.4 68 5-72 401-476 (539)
370 3nvq_A Semaphorin-7A; beta-pro 44.5 1.2E+02 0.0039 25.1 7.9 57 16-72 382-444 (590)
371 3qhy_B Beta-lactamase inhibito 43.6 90 0.0031 22.6 18.8 181 5-212 25-206 (282)
372 1q47_A Semaphorin 3A; beta pro 40.0 1.2E+02 0.0041 24.3 7.3 68 5-72 405-487 (495)
373 3oky_B Putative uncharacterize 39.3 1.3E+02 0.0044 24.7 7.4 70 140-209 406-496 (565)
374 3qhy_B Beta-lactamase inhibito 37.9 1.1E+02 0.0039 22.1 20.2 181 5-212 64-245 (282)
375 3oky_A Plexin-A2; transmembran 36.5 58 0.002 27.4 5.1 68 142-209 404-476 (681)
376 1wp5_A Topoisomerase IV; broke 34.7 1.4E+02 0.0048 22.2 20.4 148 56-212 3-173 (323)
377 3uc1_A DNA gyrase subunit A; D 34.0 1.5E+02 0.005 22.2 23.4 190 14-213 3-228 (327)
378 1olz_A Semaphorin 4D; developm 33.0 2.2E+02 0.0075 23.9 8.8 57 16-72 417-477 (663)
379 1sr4_A CDT A, cytolethal diste 32.5 87 0.003 21.6 4.7 98 19-129 64-165 (206)
380 4gz8_A Semaphorin-3A; multi-do 30.3 2.5E+02 0.0084 23.7 7.9 57 16-72 431-495 (667)
381 1sqj_A OXG-RCBH, oligoxylogluc 24.5 3.4E+02 0.011 23.3 23.7 62 4-65 15-83 (789)
382 2zux_A YESW protein; beta-prop 23.7 3.1E+02 0.011 22.6 18.6 126 70-203 231-386 (591)
383 4fww_A Macrophage-stimulating 23.2 1.6E+02 0.0055 23.7 5.6 70 138-208 406-479 (527)
384 3no0_A DNA gyrase subunit A; D 23.0 2.2E+02 0.0074 20.6 22.5 157 47-213 24-196 (276)
385 3ol2_B Plexin-B1; beta-propell 23.0 3.1E+02 0.01 22.3 7.9 68 5-72 388-461 (528)
386 3oky_B Putative uncharacterize 22.8 3.2E+02 0.011 22.5 8.9 67 6-72 405-495 (565)
387 3dgp_A RNA polymerase II trans 22.7 8 0.00027 22.0 -1.4 55 205-259 7-62 (80)
388 1uhe_A Aspartate 1-decarboxyla 22.0 1.3E+02 0.0043 17.9 3.4 23 113-135 16-38 (97)
389 1ukf_A Avirulence protein AVRP 22.0 89 0.003 21.1 3.1 39 181-219 117-156 (188)
390 3nvn_B Plexin-C1; beta-propell 20.3 3.3E+02 0.011 21.7 8.1 69 139-209 342-417 (476)
No 1
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.1e-46 Score=287.91 Aligned_cols=238 Identities=14% Similarity=0.195 Sum_probs=200.8
Q ss_pred CCCCeEEEEEcCCCeEEEecCCCeEEEEeccCCcee--eeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859 2 HRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIE--FVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD 79 (261)
Q Consensus 2 H~~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~ 79 (261)
|...|++++|+|++.|++|+.||+|+|||++++... ....+.+|.+.|++++|+|++++|++++.|++|++||+.+++
T Consensus 81 ~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~ 160 (344)
T 4gqb_B 81 TEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQV 160 (344)
T ss_dssp ESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred cCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Confidence 457899999999778999999999999999876322 223456899999999999999999999999999999999999
Q ss_pred eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC
Q psy6859 80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS 159 (261)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 159 (261)
.+..+..+...+..+.+++++..+++ +++.|++|++||+++++....+....+...+.+++|+|++.. ++++|+.|
T Consensus 161 ~~~~~~~h~~~V~~~~~~~~~~~~l~---s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~l~sg~~d 236 (344)
T 4gqb_B 161 VLSSYRAHAAQVTCVAASPHKDSVFL---SCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSE-VFVFGDEN 236 (344)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEE---EEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTT-EEEEEETT
T ss_pred EEEEEcCcCCceEEEEecCCCCCcee---eeccccccccccccccceeeeeecceeeccceeeeecCCCCc-ceEEeccC
Confidence 99999988888888999888765432 248999999999999998888776666667899999997654 37888999
Q ss_pred CeEEEEEccCCCccceeeccCcccCeEEEEEcCCC-CEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCC
Q psy6859 160 SHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIY-QVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKN 238 (261)
Q Consensus 160 ~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (261)
+.|++||++ +++++..+. +|...|++++|+|++ ++|++++.|++|+|||+++ ++ +..+.+|
T Consensus 237 g~v~~wd~~-~~~~~~~~~-~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~---------------~~-~~~~~~H 298 (344)
T 4gqb_B 237 GTVSLVDTK-STSCVLSSA-VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL---------------SE-LFRSQAH 298 (344)
T ss_dssp SEEEEEESC-C--CCEEEE-CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTC---------------CE-EEEECCC
T ss_pred CcEEEEECC-CCcEEEEEc-CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC---------------Cc-EEEEcCC
Confidence 999999999 899999998 999999999999998 5899999999999999853 33 3456889
Q ss_pred ccceeeeeECCCCc-eEEEeecCC
Q psy6859 239 KTYPSGLSFSPDGN-KFVTISMDR 261 (261)
Q Consensus 239 ~~~v~~~~~s~~~~-~l~s~~~Dg 261 (261)
.+.|++++|+|+++ +|+++|.||
T Consensus 299 ~~~V~~v~~sp~~~~llas~s~D~ 322 (344)
T 4gqb_B 299 RDFVRDATWSPLNHSLLTTVGWDH 322 (344)
T ss_dssp SSCEEEEEECSSSTTEEEEEETTS
T ss_pred CCCEEEEEEeCCCCeEEEEEcCCC
Confidence 99999999999986 567899986
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.2e-45 Score=278.71 Aligned_cols=236 Identities=19% Similarity=0.263 Sum_probs=212.4
Q ss_pred CCCCCeEEEEEcC-----CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEc
Q psy6859 1 MHRSPITHVVVTK-----TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDV 75 (261)
Q Consensus 1 gH~~~v~~~~~~~-----~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~ 75 (261)
||+++|++++|+| +.+|++|+.|++|+||++..........+.+|...|.+++|++++.++++++.|++|++||+
T Consensus 30 ~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~ 109 (321)
T 3ow8_A 30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDL 109 (321)
T ss_dssp SSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred cCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 6999999999986 35899999999999999987655566788999999999999999999999999999999999
Q ss_pred cccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEE
Q psy6859 76 INFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVS 155 (261)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (261)
.+++.+..+..+......+.++++++.+++. +.++.|++||+++++....+.. +...+.+++|+|++.+ +++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g----~~dg~v~i~~~~~~~~~~~~~~--~~~~v~~~~~spdg~~--las 181 (321)
T 3ow8_A 110 ENGKQIKSIDAGPVDAWTLAFSPDSQYLATG----THVGKVNIFGVESGKKEYSLDT--RGKFILSIAYSPDGKY--LAS 181 (321)
T ss_dssp TTTEEEEEEECCTTCCCCEEECTTSSEEEEE----CTTSEEEEEETTTCSEEEEEEC--SSSCEEEEEECTTSSE--EEE
T ss_pred CCCCEEEEEeCCCccEEEEEECCCCCEEEEE----cCCCcEEEEEcCCCceeEEecC--CCceEEEEEECCCCCE--EEE
Confidence 9999998888777777788999999887776 8999999999999988777665 3457899999999986 889
Q ss_pred ecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeec
Q psy6859 156 DQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEF 235 (261)
Q Consensus 156 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (261)
++.|+.|++||++ +++++..++ +|..+|++++|+|++++|++++.|+.|++||+++ .+.+..+
T Consensus 182 g~~dg~i~iwd~~-~~~~~~~~~-~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~---------------~~~~~~~ 244 (321)
T 3ow8_A 182 GAIDGIINIFDIA-TGKLLHTLE-GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH---------------ANLAGTL 244 (321)
T ss_dssp EETTSCEEEEETT-TTEEEEEEC-CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTT---------------CCEEEEE
T ss_pred EcCCCeEEEEECC-CCcEEEEEc-ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCC---------------cceeEEE
Confidence 9999999999999 899999998 8999999999999999999999999999999953 5677888
Q ss_pred CCCccceeeeeECCCCceEEEeecCC
Q psy6859 236 AKNKTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 236 ~~~~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
.+|...|.+++|+|++++|++++.||
T Consensus 245 ~~h~~~v~~~~~sp~~~~l~s~s~D~ 270 (321)
T 3ow8_A 245 SGHASWVLNVAFCPDDTHFVSSSSDK 270 (321)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cCCCCceEEEEECCCCCEEEEEeCCC
Confidence 99999999999999999999999986
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.8e-45 Score=279.17 Aligned_cols=234 Identities=15% Similarity=0.219 Sum_probs=215.4
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD 79 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~ 79 (261)
||...|.+++|+| +.++++++.|++|++||+.++ +.+..+..|...+.+++|+|++++|++++.|+.+++|++.+++
T Consensus 78 gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~--~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~ 155 (321)
T 3ow8_A 78 GHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENG--KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK 155 (321)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT--EEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCS
T ss_pred cCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC--CEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCc
Confidence 7999999999999 889999999999999999987 7888888899999999999999999999999999999999999
Q ss_pred eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC
Q psy6859 80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS 159 (261)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 159 (261)
....+..+...+..+.++++++.++++ +.|+.|++||+++++.+..+.. +...+.+++|+|++.. +++++.|
T Consensus 156 ~~~~~~~~~~~v~~~~~spdg~~lasg----~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~spd~~~--l~s~s~d 227 (321)
T 3ow8_A 156 KEYSLDTRGKFILSIAYSPDGKYLASG----AIDGIINIFDIATGKLLHTLEG--HAMPIRSLTFSPDSQL--LVTASDD 227 (321)
T ss_dssp EEEEEECSSSCEEEEEECTTSSEEEEE----ETTSCEEEEETTTTEEEEEECC--CSSCCCEEEECTTSCE--EEEECTT
T ss_pred eeEEecCCCceEEEEEECCCCCEEEEE----cCCCeEEEEECCCCcEEEEEcc--cCCceeEEEEcCCCCE--EEEEcCC
Confidence 888888777788889999999887776 8999999999999988887765 4457899999999975 8999999
Q ss_pred CeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCc
Q psy6859 160 SHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNK 239 (261)
Q Consensus 160 ~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (261)
+.|++||++ .++.+..+. +|...|.+++|+|++++|++++.|+.|++||++ +++++..+.+|.
T Consensus 228 g~i~iwd~~-~~~~~~~~~-~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~---------------~~~~~~~~~~h~ 290 (321)
T 3ow8_A 228 GYIKIYDVQ-HANLAGTLS-GHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVG---------------TRTCVHTFFDHQ 290 (321)
T ss_dssp SCEEEEETT-TCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETT---------------TTEEEEEECCCS
T ss_pred CeEEEEECC-CcceeEEEc-CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCC---------------CCEEEEEEcCCC
Confidence 999999999 888888887 999999999999999999999999999999994 467888899999
Q ss_pred cceeeeeECCCCceEEEeecCC
Q psy6859 240 TYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 240 ~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
..|.+++|+|++++|++++.||
T Consensus 291 ~~v~~v~~s~~g~~l~s~~~d~ 312 (321)
T 3ow8_A 291 DQVWGVKYNGNGSKIVSVGDDQ 312 (321)
T ss_dssp SCEEEEEECTTSSEEEEEETTC
T ss_pred CcEEEEEECCCCCEEEEEeCCC
Confidence 9999999999999999999986
No 4
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.4e-45 Score=276.72 Aligned_cols=236 Identities=11% Similarity=0.125 Sum_probs=208.1
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD 79 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~ 79 (261)
||.+.|++++|+| +++|++|+.||+|++||+.++ ..+..+..|..+|.+++|+|++++|++++.|++|++||+.+++
T Consensus 11 ~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~ 88 (304)
T 2ynn_A 11 NRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ--VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE 88 (304)
T ss_dssp EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT--EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC
T ss_pred CCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC--ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 6999999999999 999999999999999999987 7888999999999999999999999999999999999999999
Q ss_pred eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCce-eeEEeecCCcceEEEEEEeCCCCceEEEEecC
Q psy6859 80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDM-INMIKLDFTPLTVECIHYLGDAIPTAAVSDQD 158 (261)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (261)
.+..+..+...+..+.+++++..++++ +.|++|++||++++.. ...+.. +...+.+++|+|+... .+++|+.
T Consensus 89 ~~~~~~~h~~~v~~~~~~~~~~~l~sg----s~D~~v~lWd~~~~~~~~~~~~~--h~~~v~~v~~~p~~~~-~l~sgs~ 161 (304)
T 2ynn_A 89 KVVDFEAHPDYIRSIAVHPTKPYVLSG----SDDLTVKLWNWENNWALEQTFEG--HEHFVMCVAFNPKDPS-TFASGCL 161 (304)
T ss_dssp EEEEEECCSSCEEEEEECSSSSEEEEE----ETTSCEEEEEGGGTTEEEEEECC--CCSCEEEEEECTTCTT-EEEEEET
T ss_pred EEEEEeCCCCcEEEEEEcCCCCEEEEE----CCCCeEEEEECCCCcchhhhhcc--cCCcEEEEEECCCCCC-EEEEEeC
Confidence 999999888889999999998877666 8999999999987743 344443 5568999999995332 3889999
Q ss_pred CCeEEEEEccCCCccceeeccCcccCeEEEEEcC--CCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecC
Q psy6859 159 SSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNP--IYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFA 236 (261)
Q Consensus 159 d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (261)
|+.|++||++ ...+...+...|...+..+.|+| ++++|++++.|+.|++||++ +++++..+.
T Consensus 162 D~~v~iwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~---------------~~~~~~~~~ 225 (304)
T 2ynn_A 162 DRTVKVWSLG-QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ---------------TKSCVATLE 225 (304)
T ss_dssp TSEEEEEETT-CSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETT---------------TTEEEEEEE
T ss_pred CCeEEEEECC-CCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCC---------------CCccceeeC
Confidence 9999999998 66666665436678899999987 67899999999999999995 467888999
Q ss_pred CCccceeeeeECCCCceEEEeecCC
Q psy6859 237 KNKTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 237 ~~~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
+|...|.+++|+|++++|++|+.||
T Consensus 226 ~h~~~v~~~~~~p~~~~l~s~s~Dg 250 (304)
T 2ynn_A 226 GHMSNVSFAVFHPTLPIIISGSEDG 250 (304)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTS
T ss_pred CCCCCEEEEEECCCCCEEEEEcCCC
Confidence 9999999999999999999999986
No 5
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.5e-45 Score=288.68 Aligned_cols=234 Identities=19% Similarity=0.309 Sum_probs=215.4
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD 79 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~ 79 (261)
||.++|++++|+| +.+|++|+.||+|++||+.++ +....+.+|.+.|.+++|+|++++|++|+.|++|++||+.+++
T Consensus 106 gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~--~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~ 183 (410)
T 1vyh_C 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG--DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE 183 (410)
T ss_dssp CCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTC--CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSC
T ss_pred ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Confidence 7999999999999 899999999999999999987 7788999999999999999999999999999999999999999
Q ss_pred eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC
Q psy6859 80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS 159 (261)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 159 (261)
.+..+..+...+..+.+.++++.++++ +.|++|++||++++.++..+.. +...+.++.++|++.. +++++.|
T Consensus 184 ~~~~~~~h~~~V~~v~~~p~~~~l~s~----s~D~~i~~wd~~~~~~~~~~~~--h~~~v~~~~~~~~g~~--l~s~s~D 255 (410)
T 1vyh_C 184 CIRTMHGHDHNVSSVSIMPNGDHIVSA----SRDKTIKMWEVQTGYCVKTFTG--HREWVRMVRPNQDGTL--IASCSND 255 (410)
T ss_dssp EEECCCCCSSCEEEEEECSSSSEEEEE----ETTSEEEEEETTTCCEEEEEEC--CSSCEEEEEECTTSSE--EEEEETT
T ss_pred eeEEEcCCCCCEEEEEEeCCCCEEEEE----eCCCeEEEEECCCCcEEEEEeC--CCccEEEEEECCCCCE--EEEEcCC
Confidence 999988888889999999998877766 8999999999999998888775 4457899999999975 8899999
Q ss_pred CeEEEEEccCCCccceeeccCcccCeEEEEEcCC--------------------CCEEEEEcCCCeEEEeecccccccCC
Q psy6859 160 SHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPI--------------------YQVVVSVDKAGILEYWSGYKQEFKFP 219 (261)
Q Consensus 160 ~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~~~dg~i~iwd~~~~~~~~~ 219 (261)
+.|++||++ +++....+. .|...|.+++|+|+ +.+|++|+.|+.|++||++
T Consensus 256 ~~v~vwd~~-~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~------- 326 (410)
T 1vyh_C 256 QTVRVWVVA-TKECKAELR-EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS------- 326 (410)
T ss_dssp SCEEEEETT-TCCEEEEEC-CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT-------
T ss_pred CeEEEEECC-CCceeeEec-CCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECC-------
Confidence 999999999 888888887 89999999999996 6689999999999999995
Q ss_pred eeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859 220 KCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
+++++..+.+|...|++++|+|+|++|++|+.||
T Consensus 327 --------~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~ 360 (410)
T 1vyh_C 327 --------TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK 360 (410)
T ss_dssp --------TTEEEEEEECCSSCEEEEEECSSSSCEEEEETTT
T ss_pred --------CCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 4677888899999999999999999999999986
No 6
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.7e-45 Score=288.37 Aligned_cols=236 Identities=17% Similarity=0.231 Sum_probs=214.3
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD 79 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~ 79 (261)
||.+.|++++|+| +++|++|+.|++|++||+.+. +.+..+.+|...|.+++|+|++++|++++.|++|++||+.+++
T Consensus 148 ~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~--~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~ 225 (410)
T 1vyh_C 148 GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF--ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY 225 (410)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS--CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC
T ss_pred ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence 7999999999999 899999999999999999876 7888899999999999999999999999999999999999999
Q ss_pred eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCC----------
Q psy6859 80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAI---------- 149 (261)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 149 (261)
.+..+..+...+..+.+++++..++++ +.|+.|++||+++++....+.. +...+.+++|+|+..
T Consensus 226 ~~~~~~~h~~~v~~~~~~~~g~~l~s~----s~D~~v~vwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~~~~~~ 299 (410)
T 1vyh_C 226 CVKTFTGHREWVRMVRPNQDGTLIASC----SNDQTVRVWVVATKECKAELRE--HRHVVECISWAPESSYSSISEATGS 299 (410)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEE----ETTSCEEEEETTTCCEEEEECC--CSSCEEEEEECCSCGGGGGGGCCSC
T ss_pred EEEEEeCCCccEEEEEECCCCCEEEEE----cCCCeEEEEECCCCceeeEecC--CCceEEEEEEcCcccccchhhhccc
Confidence 999998888888888888888877666 8999999999999988877765 455789999998632
Q ss_pred --------ceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCee
Q psy6859 150 --------PTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKC 221 (261)
Q Consensus 150 --------~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 221 (261)
..++++|+.|+.|++||++ +++++..+. +|...|++++|+|++++|++++.|+.|++||+.
T Consensus 300 ~~~~~~~~g~~l~sgs~D~~i~iwd~~-~~~~~~~~~-~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~--------- 368 (410)
T 1vyh_C 300 ETKKSGKPGPFLLSGSRDKTIKMWDVS-TGMCLMTLV-GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK--------- 368 (410)
T ss_dssp C-------CCEEEEEETTSEEEEEETT-TTEEEEEEE-CCSSCEEEEEECSSSSCEEEEETTTEEEEECCT---------
T ss_pred cccccCCCCCEEEEEeCCCeEEEEECC-CCceEEEEE-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC---------
Confidence 1248899999999999999 889999998 999999999999999999999999999999984
Q ss_pred eeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859 222 VHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
.++++..+.+|...|++++|+|++++|++||.||
T Consensus 369 ------~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~ 402 (410)
T 1vyh_C 369 ------NKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQ 402 (410)
T ss_dssp ------TSCCCEEEECCSSCEEEEEECSSSSCEEEEETTS
T ss_pred ------CCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 3677888899999999999999999999999996
No 7
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=6.9e-44 Score=272.79 Aligned_cols=248 Identities=13% Similarity=0.120 Sum_probs=211.6
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD 79 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~ 79 (261)
||.++|++++|+| +++|++|+.||+|++||..+. +....+..|...|.+++|+|++++|++++.|+.+++|++.+.+
T Consensus 53 gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~ 130 (340)
T 1got_B 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTT--NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE 130 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC--CEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCS
T ss_pred CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC--CcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCC
Confidence 7999999999999 899999999999999999887 6778888999999999999999999999999999999997653
Q ss_pred ----eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEE
Q psy6859 80 ----MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVS 155 (261)
Q Consensus 80 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (261)
....+..+...+..+.+.+++. +++. +.|+.|++||+++++.+..+.. +...+.+++|+|++.. +++
T Consensus 131 ~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~----s~d~~i~~wd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~--l~s 201 (340)
T 1got_B 131 GNVRVSRELAGHTGYLSCCRFLDDNQ-IVTS----SGDTTCALWDIETGQQTTTFTG--HTGDVMSLSLAPDTRL--FVS 201 (340)
T ss_dssp BSCEEEEEEECCSSCEEEEEEEETTE-EEEE----ETTSCEEEEETTTTEEEEEECC--CSSCEEEEEECTTSSE--EEE
T ss_pred CcceeEEEecCCCccEEEEEECCCCc-EEEE----ECCCcEEEEECCCCcEEEEEcC--CCCceEEEEECCCCCE--EEE
Confidence 4445556666677777766653 4444 8999999999999988877765 4557999999999875 889
Q ss_pred ecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccccccc----CC------------
Q psy6859 156 DQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFK----FP------------ 219 (261)
Q Consensus 156 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----~~------------ 219 (261)
|+.|+.|++||++ +++++..+. +|...|++++|+|++++|++++.||.|++||++++... .+
T Consensus 202 g~~d~~v~~wd~~-~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 279 (340)
T 1got_B 202 GACDASAKLWDVR-EGMCRQTFT-GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS 279 (340)
T ss_dssp EETTSCEEEEETT-TCSEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC
T ss_pred EeCCCcEEEEECC-CCeeEEEEc-CCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEEC
Confidence 9999999999999 888889997 99999999999999999999999999999999764311 00
Q ss_pred -------------eeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859 220 -------------KCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 220 -------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
....|+....+.+..+.+|...|.+++|+|+|++|++||.||
T Consensus 280 ~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~ 334 (340)
T 1got_B 280 KSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS 334 (340)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred CCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCc
Confidence 112345566777788889999999999999999999999996
No 8
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=4.1e-44 Score=269.12 Aligned_cols=243 Identities=17% Similarity=0.178 Sum_probs=195.9
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEee--CCCEEEEEeCCCcEEEEEccc
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNY--NGTLLCTVASDKAMKVFDVIN 77 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~v~~wd~~~ 77 (261)
||++.|++++|+| +++|++|+.|++|+||++.....+++..+.+|.++|.+++|++ ++++|++++.|++|++||+.+
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~ 86 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN 86 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSS
T ss_pred CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCC
Confidence 7999999999999 9999999999999999997644467788999999999999986 488999999999999999987
Q ss_pred cc--eeeeeeccCcceeEEEEeec--CCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCC----
Q psy6859 78 FD--MINMIKLDFTPLTVECIHYL--GDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAI---- 149 (261)
Q Consensus 78 ~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 149 (261)
++ .+..+..+...+..+.+.++ +..++++ +.|+.|++||+++...........+...+.+++|+|+..
T Consensus 87 ~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~----s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 87 GRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVA----SSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp SCBCCCEEECCCSSCEEEEEECCGGGCSEEEEE----ETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred CceEEEEEeecCCCceeEEEeCcCCCCcEEEEE----ECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence 74 44455556677888888886 5566555 899999999998764322223334566899999999731
Q ss_pred -------ceEEEEecCCCeEEEEEccCCCc----cceeeccCcccCeEEEEEcCCC---CEEEEEcCCCeEEEeeccccc
Q psy6859 150 -------PTAAVSDQDSSHVHIYDCKGNGT----PLHVLDRLHTKPVVLIKFNPIY---QVVVSVDKAGILEYWSGYKQE 215 (261)
Q Consensus 150 -------~~~~~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~ 215 (261)
...+++|+.|+.|++||++ .++ +...+. +|...|.+++|+|++ ++|++++.|++|++||++...
T Consensus 163 ~~~~~~~~~~l~sgs~D~~v~lwd~~-~~~~~~~~~~~l~-~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~ 240 (297)
T 2pm7_B 163 EHNGTKESRKFVTGGADNLVKIWKYN-SDAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQ 240 (297)
T ss_dssp -------CCEEEEEETTSCEEEEEEE-TTTTEEEEEEEEC-CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred cCCCCCCcceEEEEcCCCcEEEEEEc-CCCceEEEEEEec-CCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCC
Confidence 1248999999999999998 554 556776 899999999999985 799999999999999986421
Q ss_pred ccCCeeeeeecccccceeec--CCCccceeeeeECCCCceEEEeecCC
Q psy6859 216 FKFPKCVHFESKLDTDLFEF--AKNKTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
. ......+ ..|...|.+++|+|+|++||+++.||
T Consensus 241 ~------------~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~ 276 (297)
T 2pm7_B 241 G------------PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN 276 (297)
T ss_dssp S------------CCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTS
T ss_pred C------------ccceeeeecccCCCcEEEEEECCCCCEEEEEcCCC
Confidence 0 0011122 46788999999999999999999986
No 9
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1e-44 Score=278.94 Aligned_cols=238 Identities=13% Similarity=0.223 Sum_probs=199.5
Q ss_pred CCCCCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeee--EEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccc
Q psy6859 1 MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFV--KHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINF 78 (261)
Q Consensus 1 gH~~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~ 78 (261)
+|...|++++|+|+..+++++.||+|+|||+.++..... ....+|.+.|++++|+|++++|++++.|+.|++||+.++
T Consensus 92 ~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~ 171 (357)
T 4g56_B 92 QTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK 171 (357)
T ss_dssp ECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTT
T ss_pred CCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence 478899999999955677889999999999987532222 234579999999999999999999999999999999999
Q ss_pred ceeeeeeccCcceeEEEEeecCCc-eeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEec
Q psy6859 79 DMINMIKLDFTPLTVECIHYLGDA-IPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ 157 (261)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (261)
+.+..+..+...+..+.+++++.. +++. +.|+.|++||+++++....+....+...+.+++|+|++.. ++++|+
T Consensus 172 ~~~~~~~~h~~~v~~v~~s~~~~~~~~s~----~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~-~la~g~ 246 (357)
T 4g56_B 172 AVLKSYNAHSSEVNCVAACPGKDTIFLSC----GEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDD-TFACGD 246 (357)
T ss_dssp EEEEEECCCSSCEEEEEECTTCSSCEEEE----ETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTT-EEEEEE
T ss_pred cEEEEEcCCCCCEEEEEEccCCCceeeee----ccCCceEEEECCCCceeeeeeeccccccccchhhhhcccc-eEEEee
Confidence 999999888888888888887754 3444 8999999999999988887777667778999999998654 377888
Q ss_pred CCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCC-CEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecC
Q psy6859 158 DSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIY-QVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFA 236 (261)
Q Consensus 158 ~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (261)
.|+.|++||++ +++++..+. .|...|++++|+|++ ++|++++.|+.|+|||+++ ++.+.. .
T Consensus 247 ~d~~i~~wd~~-~~~~~~~~~-~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~---------------~~~~~~-~ 308 (357)
T 4g56_B 247 ETGNVSLVNIK-NPDSAQTSA-VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF---------------SEVFRD-L 308 (357)
T ss_dssp SSSCEEEEESS-CGGGCEEEC-CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS---------------CEEEEE-C
T ss_pred cccceeEEECC-CCcEeEEEe-ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC---------------CcEeEE-C
Confidence 99999999999 889999998 999999999999987 5899999999999999854 444443 4
Q ss_pred CCccceeeeeECC-CCceEEEeecCC
Q psy6859 237 KNKTYPSGLSFSP-DGNKFVTISMDR 261 (261)
Q Consensus 237 ~~~~~v~~~~~s~-~~~~l~s~~~Dg 261 (261)
+|...|++++|+| ++++|+++|.||
T Consensus 309 ~H~~~V~~vafsP~d~~~l~s~s~Dg 334 (357)
T 4g56_B 309 SHRDFVTGVAWSPLDHSKFTTVGWDH 334 (357)
T ss_dssp CCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred CCCCCEEEEEEeCCCCCEEEEEcCCC
Confidence 7999999999999 899999999996
No 10
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.8e-43 Score=271.70 Aligned_cols=251 Identities=13% Similarity=0.149 Sum_probs=212.4
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccc-
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINF- 78 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~- 78 (261)
||.++|++++|+| +++|++|+.||+|++||..+. +....+..|...|.+++|+|+++++++++.|+.+++|++...
T Consensus 62 gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~--~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~ 139 (354)
T 2pbi_B 62 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTT--NKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDK 139 (354)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--CEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCT
T ss_pred CCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCC--CcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccc
Confidence 7999999999999 899999999999999999876 666778889999999999999999999999999999998643
Q ss_pred -----ceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEE
Q psy6859 79 -----DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAA 153 (261)
Q Consensus 79 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (261)
.....+..+...+..+.+.+++..++++ +.|++|++||+++++.+..+..+ ...+.+++++|+.....+
T Consensus 140 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~----s~D~~v~lwd~~~~~~~~~~~~h--~~~v~~~~~~~~~~g~~l 213 (354)
T 2pbi_B 140 NENMAAKKKSVAMHTNYLSACSFTNSDMQILTA----SGDGTCALWDVESGQLLQSFHGH--GADVLCLDLAPSETGNTF 213 (354)
T ss_dssp TCCSGGGCEEEEECSSCEEEEEECSSSSEEEEE----ETTSEEEEEETTTCCEEEEEECC--SSCEEEEEECCCSSCCEE
T ss_pred cccccccceeeeccCCcEEEEEEeCCCCEEEEE----eCCCcEEEEeCCCCeEEEEEcCC--CCCeEEEEEEeCCCCCEE
Confidence 2344555677778888888888877766 89999999999999988888764 446788888775322248
Q ss_pred EEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccccccc----C-----C-----
Q psy6859 154 VSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFK----F-----P----- 219 (261)
Q Consensus 154 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----~-----~----- 219 (261)
++|+.|+.|++||++ +++++..+. .|...|++++|+|++++|++++.|+.|++||++..... . +
T Consensus 214 ~sgs~Dg~v~~wd~~-~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~ 291 (354)
T 2pbi_B 214 VSGGCDKKAMVWDMR-SGQCVQAFE-THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVD 291 (354)
T ss_dssp EEEETTSCEEEEETT-TCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE
T ss_pred EEEeCCCeEEEEECC-CCcEEEEec-CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEE
Confidence 999999999999999 889999997 99999999999999999999999999999998754210 0 0
Q ss_pred ---------------eeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859 220 ---------------KCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 220 ---------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
....|+..+++.+..+.+|...|++++|+|+|++|++|+.||
T Consensus 292 ~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~ 348 (354)
T 2pbi_B 292 FSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDH 348 (354)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTS
T ss_pred EeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCC
Confidence 112345556777788889999999999999999999999996
No 11
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.8e-43 Score=266.52 Aligned_cols=237 Identities=14% Similarity=0.168 Sum_probs=204.1
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccc-
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINF- 78 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~- 78 (261)
+|..+|.+++|+| +++|++|+.|++|++||+.++ +.+..+.+|.+.|.+++|+|++++|++++.|++|++||+.++
T Consensus 53 ~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~ 130 (304)
T 2ynn_A 53 VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG--EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW 130 (304)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC--CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT
T ss_pred ccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCC--cEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc
Confidence 5889999999999 899999999999999999987 788889999999999999999999999999999999999887
Q ss_pred ceeeeeeccCcceeEEEEeec-CCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEec
Q psy6859 79 DMINMIKLDFTPLTVECIHYL-GDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ 157 (261)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (261)
.....+..+...+..+.++|. +..++++ +.|++|++||+++......+... +...+..+.+.|.....++++++
T Consensus 131 ~~~~~~~~h~~~v~~v~~~p~~~~~l~sg----s~D~~v~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~s 205 (304)
T 2ynn_A 131 ALEQTFEGHEHFVMCVAFNPKDPSTFASG----CLDRTVKVWSLGQSTPNFTLTTG-QERGVNYVDYYPLPDKPYMITAS 205 (304)
T ss_dssp EEEEEECCCCSCEEEEEECTTCTTEEEEE----ETTSEEEEEETTCSSCSEEEECC-CTTCEEEEEECCSTTCCEEEEEE
T ss_pred chhhhhcccCCcEEEEEECCCCCCEEEEE----eCCCeEEEEECCCCCccceeccC-CcCcEEEEEEEEcCCCCEEEEEc
Confidence 445566777777888888874 4555555 89999999999888766665533 33467788887643223489999
Q ss_pred CCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCC
Q psy6859 158 DSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK 237 (261)
Q Consensus 158 ~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (261)
.|+.|++||++ +++++..+. +|...|.+++|+|++++|++++.||.|++||+. +.+.+..+..
T Consensus 206 ~D~~i~iWd~~-~~~~~~~~~-~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~---------------~~~~~~~~~~ 268 (304)
T 2ynn_A 206 DDLTIKIWDYQ-TKSCVATLE-GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS---------------TYKVEKTLNV 268 (304)
T ss_dssp TTSEEEEEETT-TTEEEEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEETT---------------TCCEEEEECC
T ss_pred CCCeEEEEeCC-CCccceeeC-CCCCCEEEEEECCCCCEEEEEcCCCeEEEEECC---------------CCceeeeccC
Confidence 99999999999 889999998 999999999999999999999999999999984 4678888899
Q ss_pred CccceeeeeECCCCc--eEEEeecCC
Q psy6859 238 NKTYPSGLSFSPDGN--KFVTISMDR 261 (261)
Q Consensus 238 ~~~~v~~~~~s~~~~--~l~s~~~Dg 261 (261)
|...+++++|+|++. +|++|+.||
T Consensus 269 ~~~~~~~~~~~~~~~~~~~asg~~~g 294 (304)
T 2ynn_A 269 GLERSWCIATHPTGRKNYIASGFDNG 294 (304)
T ss_dssp SSSSEEEEEECTTCGGGCEEEEETTE
T ss_pred CCccEEEEEECCCCCceEEEEecCCc
Confidence 999999999999875 688888775
No 12
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.5e-42 Score=261.25 Aligned_cols=248 Identities=18% Similarity=0.249 Sum_probs=216.6
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD 79 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~ 79 (261)
||.++|++++|+| +++|++|+.||.|++|+..+. +....+.+|...|.+++|+|++++|++++.|+.|++||+.+++
T Consensus 21 gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 98 (312)
T 4ery_A 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK 98 (312)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred ccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCc--ccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCc
Confidence 7999999999999 899999999999999999877 6778889999999999999999999999999999999999999
Q ss_pred eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC
Q psy6859 80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS 159 (261)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 159 (261)
.+..+..+...+..+.+.++++.++++ +.|+.|++||+++++.+..+.. +...+.++.|+|++.. +++++.|
T Consensus 99 ~~~~~~~~~~~v~~~~~~~~~~~l~s~----~~d~~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~--l~~~~~d 170 (312)
T 4ery_A 99 CLKTLKGHSNYVFCCNFNPQSNLIVSG----SFDESVRIWDVKTGKCLKTLPA--HSDPVSAVHFNRDGSL--IVSSSYD 170 (312)
T ss_dssp EEEEEECCSSCEEEEEECSSSSEEEEE----ETTSCEEEEETTTCCEEEEECC--CSSCEEEEEECTTSSE--EEEEETT
T ss_pred EEEEEcCCCCCEEEEEEcCCCCEEEEE----eCCCcEEEEECCCCEEEEEecC--CCCcEEEEEEcCCCCE--EEEEeCC
Confidence 999988888888888999988877766 8999999999999988877765 4457899999999875 8899999
Q ss_pred CeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccC---------------------
Q psy6859 160 SHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKF--------------------- 218 (261)
Q Consensus 160 ~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--------------------- 218 (261)
+.|++||++ +++.+..+...+..++..++|+|++++|++++.|+.|++||+++++...
T Consensus 171 ~~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (312)
T 4ery_A 171 GLCRIWDTA-SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 249 (312)
T ss_dssp SCEEEEETT-TCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSS
T ss_pred CcEEEEECC-CCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCC
Confidence 999999999 7777776643567789999999999999999999999999997643110
Q ss_pred ---------CeeeeeecccccceeecCCCccceeeeeECCCCceEEEeec
Q psy6859 219 ---------PKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISM 259 (261)
Q Consensus 219 ---------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 259 (261)
.....|+..+++.+..+.+|...|.+++|+|++++|++++.
T Consensus 250 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~ 299 (312)
T 4ery_A 250 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL 299 (312)
T ss_dssp CEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEEC
T ss_pred cEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEc
Confidence 01133566777888899999999999999999999999873
No 13
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=5.1e-42 Score=262.81 Aligned_cols=254 Identities=13% Similarity=0.128 Sum_probs=203.6
Q ss_pred CCCCCeEEEEE-----cC--CCeEEEecCCCeEEEEeccCCc-----eeeeEEeeccccceeEEEEeeCCCEEEEEeCCC
Q psy6859 1 MHRSPITHVVV-----TK--TDFVITASNDGHIKFWKKQEEG-----IEFVKHFRSHLGVIHSICTNYNGTLLCTVASDK 68 (261)
Q Consensus 1 gH~~~v~~~~~-----~~--~~~l~s~~~d~~i~iw~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 68 (261)
||++.|++++| ++ +++|++|+.|++|++|++.... ..+...+.+|...|.+++|+|+++++++++.|+
T Consensus 19 gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~ 98 (343)
T 2xzm_R 19 GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDK 98 (343)
T ss_dssp CCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTS
T ss_pred cchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCC
Confidence 79999999999 65 6799999999999999987532 245678899999999999999999999999999
Q ss_pred cEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCC
Q psy6859 69 AMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDA 148 (261)
Q Consensus 69 ~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (261)
+|++||+.+++.+..+..+..++..+.++++++.++++ +.|+.|++||+.............+...+.++.|+|++
T Consensus 99 ~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~----~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 174 (343)
T 2xzm_R 99 TLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSA----GAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIM 174 (343)
T ss_dssp EEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEE----ETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCC
T ss_pred cEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEE----cCCCEEEEEeccCCceeeeecccCCCceeeeeeecccc
Confidence 99999999999999998888889999999999887776 89999999999854333322223456679999999986
Q ss_pred Cc--------eEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccC--
Q psy6859 149 IP--------TAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKF-- 218 (261)
Q Consensus 149 ~~--------~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-- 218 (261)
.. .++++++.|+.|++||. ..+....+. .|...|++++|+|++++|++++.||.|++||+.......
T Consensus 175 ~~~~~~~~~~~~l~s~~~d~~i~iwd~--~~~~~~~~~-~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~ 251 (343)
T 2xzm_R 175 KSANKVQPFAPYFASVGWDGRLKVWNT--NFQIRYTFK-AHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQRE 251 (343)
T ss_dssp CSCSCCCSSCCEEEEEETTSEEEEEET--TTEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEE
T ss_pred ccccccCCCCCEEEEEcCCCEEEEEcC--CCceeEEEc-CccccceEEEECCCCCEEEEEcCCCeEEEEECCCCccccee
Confidence 21 24889999999999995 556777787 899999999999999999999999999999984322110
Q ss_pred ---C---ee------------------eeeeccccccee--ecC-----------CCccceeeeeECCCCceEEEeecCC
Q psy6859 219 ---P---KC------------------VHFESKLDTDLF--EFA-----------KNKTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 219 ---~---~~------------------~~~~~~~~~~~~--~~~-----------~~~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
. .. ..++..+.+... .+. +|...|.+++|+|+|++|++|+.||
T Consensus 252 ~~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg 331 (343)
T 2xzm_R 252 FDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDG 331 (343)
T ss_dssp EECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTS
T ss_pred ecCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCc
Confidence 0 00 112222222211 222 6788899999999999999999986
No 14
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2e-42 Score=262.41 Aligned_cols=235 Identities=14% Similarity=0.195 Sum_probs=201.7
Q ss_pred CCCCCeEEEEEcC-C-CeEEEecCCCeEEEEeccCCc---eeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEc
Q psy6859 1 MHRSPITHVVVTK-T-DFVITASNDGHIKFWKKQEEG---IEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDV 75 (261)
Q Consensus 1 gH~~~v~~~~~~~-~-~~l~s~~~d~~i~iw~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~ 75 (261)
||+++|++++|+| + ++|++|+.|++|++|++.... ..++..+.+|...|.+++|+|++++|++++.|++|++||+
T Consensus 15 gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~ 94 (319)
T 3frx_A 15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDV 94 (319)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred cccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 7999999999998 4 799999999999999986522 2457788999999999999999999999999999999999
Q ss_pred cccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCC----ce
Q psy6859 76 INFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAI----PT 151 (261)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 151 (261)
.+++.+..+..+..++..+.+.+++..++++ +.|++|++||++.. .+..+.. +...+.++.+.|... ..
T Consensus 95 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~----s~D~~i~vwd~~~~-~~~~~~~--h~~~v~~~~~~~~~~~~~~~~ 167 (319)
T 3frx_A 95 ATGETYQRFVGHKSDVMSVDIDKKASMIISG----SRDKTIKVWTIKGQ-CLATLLG--HNDWVSQVRVVPNEKADDDSV 167 (319)
T ss_dssp TTTEEEEEEECCSSCEEEEEECTTSCEEEEE----ETTSCEEEEETTSC-EEEEECC--CSSCEEEEEECCC------CC
T ss_pred CCCCeeEEEccCCCcEEEEEEcCCCCEEEEE----eCCCeEEEEECCCC-eEEEEec--cCCcEEEEEEccCCCCCCCcc
Confidence 9999999998888888889999888877766 89999999999754 4444443 455788999988542 12
Q ss_pred EEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccc
Q psy6859 152 AAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTD 231 (261)
Q Consensus 152 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 231 (261)
.+++++.|+.|++||++ ..+....+. +|...|++++|+|++++|++++.||.|++||+.+ .+.
T Consensus 168 ~l~s~~~d~~i~~wd~~-~~~~~~~~~-~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~---------------~~~ 230 (319)
T 3frx_A 168 TIISAGNDKMVKAWNLN-QFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA---------------KKA 230 (319)
T ss_dssp EEEEEETTSCEEEEETT-TTEEEEEEC-CCCSCEEEEEECTTSSEEEEEETTCEEEEEETTT---------------TEE
T ss_pred EEEEEeCCCEEEEEECC-cchhheeec-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC---------------CcE
Confidence 48899999999999998 888888887 9999999999999999999999999999999954 556
Q ss_pred eeecCCCccceeeeeECCCCceEEEeecC
Q psy6859 232 LFEFAKNKTYPSGLSFSPDGNKFVTISMD 260 (261)
Q Consensus 232 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~D 260 (261)
+..+.. ...|.+++|+|++.+|++++.+
T Consensus 231 ~~~~~~-~~~v~~~~~sp~~~~la~~~~~ 258 (319)
T 3frx_A 231 MYTLSA-QDEVFSLAFSPNRYWLAAATAT 258 (319)
T ss_dssp EEEEEC-CSCEEEEEECSSSSEEEEEETT
T ss_pred EEEecC-CCcEEEEEEcCCCCEEEEEcCC
Confidence 666664 4689999999999999988765
No 15
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=5.1e-43 Score=271.80 Aligned_cols=252 Identities=15% Similarity=0.158 Sum_probs=203.5
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD 79 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~ 79 (261)
||+++|++++|+| +++|++|+.|++|+|||..+. +....+..|...|.+++|+|++++|++++.|+.+++||+.+..
T Consensus 64 gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~--~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~ 141 (380)
T 3iz6_a 64 GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTS--QKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQA 141 (380)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTT--EEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCS
T ss_pred ccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--ccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCc
Confidence 7999999999999 899999999999999999887 7888899999999999999999999999999999999986532
Q ss_pred -------eeeeeeccCcceeEEEEeecCC-ceeeeeeecCCCCeEEEEEcCCCceeeEEee---cCCcceEEEEEEeC-C
Q psy6859 80 -------MINMIKLDFTPLTVECIHYLGD-AIPTAAVSDQDSSRVHIYDCKGNDMINMIKL---DFTPLTVECIHYLG-D 147 (261)
Q Consensus 80 -------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~-~ 147 (261)
....+..+...+..+.+.+++. .++++ +.|++|++||+++++.+..+.. ..+...+.++.+++ +
T Consensus 142 ~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~----s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 217 (380)
T 3iz6_a 142 DRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITG----SGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLN 217 (380)
T ss_dssp SCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEE----CTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSS
T ss_pred cccCCccceeeccCCCcceEEEEEecCCCCEEEEE----CCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCC
Confidence 2233444444555555555433 35444 9999999999999988777632 23456789999987 4
Q ss_pred CCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccccccc----C-----
Q psy6859 148 AIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFK----F----- 218 (261)
Q Consensus 148 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----~----- 218 (261)
+. ++++|+.|+.|++||++...+++..+. +|...|++++|+|++++|++++.|+.|++||++++... .
T Consensus 218 ~~--~l~sgs~D~~v~~wd~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~ 294 (380)
T 3iz6_a 218 AN--MFISGSCDTTVRLWDLRITSRAVRTYH-GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN 294 (380)
T ss_dssp CC--EEEEEETTSCEEEEETTTTCCCCEEEC-CCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSS
T ss_pred CC--EEEEEECCCeEEEEECCCCCcceEEEC-CcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccc
Confidence 54 388999999999999984557888887 99999999999999999999999999999999764210 0
Q ss_pred -------------C------------eeeeeecccccceeec----CCCccceeeeeECCCCceEEEeecCC
Q psy6859 219 -------------P------------KCVHFESKLDTDLFEF----AKNKTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 219 -------------~------------~~~~~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
+ ....|+...++.+..+ .+|...|++++|+|+|++|++||.||
T Consensus 295 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~ 366 (380)
T 3iz6_a 295 DNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDK 366 (380)
T ss_dssp CCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTS
T ss_pred ccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCC
Confidence 0 0122444445555544 57999999999999999999999996
No 16
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.1e-42 Score=263.44 Aligned_cols=253 Identities=11% Similarity=0.130 Sum_probs=201.1
Q ss_pred CCCC-CeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeE-EeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccc
Q psy6859 1 MHRS-PITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVK-HFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVIN 77 (261)
Q Consensus 1 gH~~-~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~ 77 (261)
||.+ .|++++|+| +++||+|+.|++|+||++.+....... ...+|...|.+++|+|++++|++++.|+++++||+..
T Consensus 13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~ 92 (345)
T 3fm0_A 13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQ 92 (345)
T ss_dssp CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECC
T ss_pred CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccC
Confidence 6887 999999999 999999999999999999876322222 2368999999999999999999999999999999887
Q ss_pred cc--eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEE-eecCCcceEEEEEEeCCCCceEEE
Q psy6859 78 FD--MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMI-KLDFTPLTVECIHYLGDAIPTAAV 154 (261)
Q Consensus 78 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 154 (261)
+. .+..+..+..++..+.++++++.++++ +.|+.|++||++++.....+ ....+...+.+++|+|++.. ++
T Consensus 93 ~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~----s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~--l~ 166 (345)
T 3fm0_A 93 DDFECVTTLEGHENEVKSVAWAPSGNLLATC----SRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQEL--LA 166 (345)
T ss_dssp C-EEEEEEECCCSSCEEEEEECTTSSEEEEE----ETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSC--EE
T ss_pred CCeEEEEEccCCCCCceEEEEeCCCCEEEEE----ECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCE--EE
Confidence 64 566777777888899999999877776 89999999999876543222 23345668999999999986 88
Q ss_pred EecCCCeEEEEEccCCCc--cceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccce
Q psy6859 155 SDQDSSHVHIYDCKGNGT--PLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDL 232 (261)
Q Consensus 155 ~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 232 (261)
+++.|+.|++||.+ .+. +...+. +|...|++++|+|++++|++++.|+.|++||...................+++
T Consensus 167 s~s~d~~i~~w~~~-~~~~~~~~~~~-~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~ 244 (345)
T 3fm0_A 167 SASYDDTVKLYREE-EDDWVCCATLE-GHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCI 244 (345)
T ss_dssp EEETTSCEEEEEEE-TTEEEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEE
T ss_pred EEeCCCcEEEEEec-CCCEEEEEEec-CCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCcccee
Confidence 99999999999998 554 456776 89999999999999999999999999999997432111100000001122344
Q ss_pred eecCC-CccceeeeeECCCCceEEEeecCC
Q psy6859 233 FEFAK-NKTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 233 ~~~~~-~~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
..+.+ |...|.+++|+|++..|++++.|+
T Consensus 245 ~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~ 274 (345)
T 3fm0_A 245 CTLSGFHSRTIYDIAWCQLTGALATACGDD 274 (345)
T ss_dssp EEECSSCSSCEEEEEECTTTCCEEEEETTS
T ss_pred EEecCCCCCcEEEEEEecCCCEEEEEeCCC
Confidence 55555 889999999999999999999885
No 17
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3.8e-43 Score=266.08 Aligned_cols=244 Identities=12% Similarity=0.137 Sum_probs=192.5
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEee--CCCEEEEEeCCCcEEEEEccc
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNY--NGTLLCTVASDKAMKVFDVIN 77 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~v~~wd~~~ 77 (261)
||+++|++++|+| +++|++|+.|++|+|||+.++....+..+.+|.++|.+++|++ ++++|++++.|++|++||+.+
T Consensus 11 ~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~ 90 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN 90 (316)
T ss_dssp ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSS
T ss_pred cccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCC
Confidence 7999999999999 9999999999999999998764456788999999999999985 488999999999999999988
Q ss_pred cc--eeeeeeccCcceeEEEEeec--CCceeeeeeecCCCCeEEEEEcCCCceee-EEeecCCcceEEEEEEeCCCC---
Q psy6859 78 FD--MINMIKLDFTPLTVECIHYL--GDAIPTAAVSDQDSSRVHIYDCKGNDMIN-MIKLDFTPLTVECIHYLGDAI--- 149 (261)
Q Consensus 78 ~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--- 149 (261)
++ ....+..+...+..+.++++ +..++++ +.|+.|++||++...... ......+...+.++.|+|+..
T Consensus 91 ~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasg----s~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 166 (316)
T 3bg1_A 91 GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACG----SSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGS 166 (316)
T ss_dssp SCCCEEEEECCCSSCCCEEEECCTTTCSCEEEE----CSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC--
T ss_pred CcceEEEEccCCCCceEEEEECCCCCCcEEEEE----cCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcc
Confidence 74 44555566677888888887 5555555 999999999998763221 112233455778899988731
Q ss_pred ------------ceEEEEecCCCeEEEEEccCCC---ccceeeccCcccCeEEEEEcCCC----CEEEEEcCCCeEEEee
Q psy6859 150 ------------PTAAVSDQDSSHVHIYDCKGNG---TPLHVLDRLHTKPVVLIKFNPIY----QVVVSVDKAGILEYWS 210 (261)
Q Consensus 150 ------------~~~~~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~iwd 210 (261)
...+++|+.|+.|++||++ .. +++..+. +|...|.+++|+|++ ++|++++.|++|++|+
T Consensus 167 ~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~-~~~~~~~~~~l~-~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~ 244 (316)
T 3bg1_A 167 LIDHPSGQKPNYIKRFASGGCDNLIKLWKEE-EDGQWKEEQKLE-AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT 244 (316)
T ss_dssp ----CCSCCCCCCCBEECCBTTSBCCEEEEC-TTSCEEEEECCB-CCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEE
T ss_pred ccccccccCccccceEEEecCCCeEEEEEeC-CCCccceeeecc-cCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEE
Confidence 0238999999999999997 44 4567777 899999999999987 7899999999999999
Q ss_pred cccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859 211 GYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
+++... .......+..|...|++++|+|++++||+++.||
T Consensus 245 ~~~~~~-----------~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~ 284 (316)
T 3bg1_A 245 CDDASS-----------NTWSPKLLHKFNDVVWHVSWSITANILAVSGGDN 284 (316)
T ss_dssp CSSTTC-----------CCCBCCEEEECSSCEEEEEECTTTCCEEEEESSS
T ss_pred ccCccc-----------cchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCC
Confidence 864100 0111233456889999999999999999999986
No 18
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=9.3e-42 Score=261.47 Aligned_cols=249 Identities=16% Similarity=0.209 Sum_probs=201.1
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD 79 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~ 79 (261)
||...|++++|+| +++|++|+.|+++++|+......+.+..+.+|...|.+++|+|++++|++++.|++|++||+.++.
T Consensus 59 ~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~ 138 (345)
T 3fm0_A 59 GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEED 138 (345)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTS
T ss_pred ccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCC
Confidence 6999999999999 999999999999999999876556788899999999999999999999999999999999998764
Q ss_pred ---eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEe
Q psy6859 80 ---MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSD 156 (261)
Q Consensus 80 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (261)
.+..+..+...+..+.+++++..++++ +.|+.|++||+++++.........+...|.+++|+|++.+ ++++
T Consensus 139 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~----s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~--l~s~ 212 (345)
T 3fm0_A 139 EYECVSVLNSHTQDVKHVVWHPSQELLASA----SYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQR--LASC 212 (345)
T ss_dssp CEEEEEEECCCCSCEEEEEECSSSSCEEEE----ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSE--EEEE
T ss_pred CeEEEEEecCcCCCeEEEEECCCCCEEEEE----eCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCE--EEEE
Confidence 344555666778888899998877766 8999999999988765544444556678999999999976 8899
Q ss_pred cCCCeEEEEEccCCC--------------ccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeee
Q psy6859 157 QDSSHVHIYDCKGNG--------------TPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCV 222 (261)
Q Consensus 157 ~~d~~i~i~d~~~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 222 (261)
+.|++|++||....+ +++..+...|...|.+++|+|++..|++++.|+.|++|+...........
T Consensus 213 s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~- 291 (345)
T 3fm0_A 213 SDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPT- 291 (345)
T ss_dssp ETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCC-
T ss_pred eCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceee-
Confidence 999999999975221 12233432388899999999999999999999999999986432100000
Q ss_pred eeecccccceeecCCCccceeeeeECCCC-ceEEEeecCC
Q psy6859 223 HFESKLDTDLFEFAKNKTYPSGLSFSPDG-NKFVTISMDR 261 (261)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~Dg 261 (261)
.........+|...|++++|+|++ .+||+||.||
T Consensus 292 -----~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg 326 (345)
T 3fm0_A 292 -----FSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDG 326 (345)
T ss_dssp -----EEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTS
T ss_pred -----EEEEeeecccccCcEeEeEEeCCCceEEEEcCCCC
Confidence 001123346899999999999998 4999999996
No 19
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.9e-41 Score=258.04 Aligned_cols=254 Identities=14% Similarity=0.151 Sum_probs=208.1
Q ss_pred CCCCCeEEEEEcC--CCeEEEecCCCeEEEEeccCCc---eeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEc
Q psy6859 1 MHRSPITHVVVTK--TDFVITASNDGHIKFWKKQEEG---IEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDV 75 (261)
Q Consensus 1 gH~~~v~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~ 75 (261)
||+++|++|+|+| +++|+||+.|++|+|||+.... ..+...+++|...|.+++|+|++++|++++.|+.|++|+.
T Consensus 36 GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~ 115 (340)
T 4aow_A 36 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDL 115 (340)
T ss_dssp CCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred CccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEee
Confidence 8999999999998 4799999999999999987642 2456788999999999999999999999999999999999
Q ss_pred cccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEE
Q psy6859 76 INFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVS 155 (261)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (261)
....................+.+.+..++++ +.|+.+++||+...... ......+...+..++|+++....++++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~----s~d~~~~~~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~s 190 (340)
T 4aow_A 116 TTGTTTRRFVGHTKDVLSVAFSSDNRQIVSG----SRDKTIKLWNTLGVCKY-TVQDESHSEWVSCVRFSPNSSNPIIVS 190 (340)
T ss_dssp TTTEEEEEEECCSSCEEEEEECTTSSCEEEE----ETTSCEEEECTTSCEEE-EECSSSCSSCEEEEEECSCSSSCEEEE
T ss_pred cccceeeeecCCCCceeEEEEeecCccceee----cCCCeEEEEEeCCCceE-EEEeccccCcccceEEccCCCCcEEEE
Confidence 9888887777777777777888888777666 89999999998876433 333344566888999998877677899
Q ss_pred ecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccC----C------------
Q psy6859 156 DQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKF----P------------ 219 (261)
Q Consensus 156 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----~------------ 219 (261)
++.|+.|++||++ +++++..+. +|..+|++++|+|++++|++++.|+.|++||+++..... .
T Consensus 191 ~~~d~~i~i~d~~-~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~ 268 (340)
T 4aow_A 191 CGWDKLVKVWNLA-NCKLKTNHI-GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNR 268 (340)
T ss_dssp EETTSCEEEEETT-TTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSS
T ss_pred EcCCCEEEEEECC-CCceeeEec-CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCC
Confidence 9999999999999 888888887 999999999999999999999999999999988653211 0
Q ss_pred ---------eeeeeecccccceee---------cCCCccceeeeeECCCCceEEEeecCC
Q psy6859 220 ---------KCVHFESKLDTDLFE---------FAKNKTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 220 ---------~~~~~~~~~~~~~~~---------~~~~~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
....++.+....+.. ..+|...|++++|+|||++|++|+.||
T Consensus 269 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg 328 (340)
T 4aow_A 269 YWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDN 328 (340)
T ss_dssp SEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTS
T ss_pred ceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCC
Confidence 001122233322222 346888999999999999999999996
No 20
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1e-40 Score=253.07 Aligned_cols=239 Identities=13% Similarity=0.115 Sum_probs=194.1
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD 79 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~ 79 (261)
||...|++++|+| +++|++|+.|++|++||+.++ +.+..+.+|...|.+++|+|++++|++++.|++|++||+. ++
T Consensus 63 ~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~ 139 (319)
T 3frx_A 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATG--ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQ 139 (319)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT--EEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SC
T ss_pred CCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCC--CeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CC
Confidence 7999999999999 899999999999999999987 7888999999999999999999999999999999999985 55
Q ss_pred eeeeeeccCcceeEEEEeecCC------ceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEE
Q psy6859 80 MINMIKLDFTPLTVECIHYLGD------AIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAA 153 (261)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (261)
.+..+..+...+..+.+.+... .++ +++.|+.|++||+++.+....+.. +...+.+++|+|++.+ +
T Consensus 140 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~----s~~~d~~i~~wd~~~~~~~~~~~~--h~~~v~~~~~sp~g~~--l 211 (319)
T 3frx_A 140 CLATLLGHNDWVSQVRVVPNEKADDDSVTII----SAGNDKMVKAWNLNQFQIEADFIG--HNSNINTLTASPDGTL--I 211 (319)
T ss_dssp EEEEECCCSSCEEEEEECCC------CCEEE----EEETTSCEEEEETTTTEEEEEECC--CCSCEEEEEECTTSSE--E
T ss_pred eEEEEeccCCcEEEEEEccCCCCCCCccEEE----EEeCCCEEEEEECCcchhheeecC--CCCcEEEEEEcCCCCE--E
Confidence 6666666666666777766432 343 448999999999999887776655 4568999999999975 8
Q ss_pred EEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeeccccccee
Q psy6859 154 VSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLF 233 (261)
Q Consensus 154 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 233 (261)
++++.|+.|++||++ +++++..+. +...|.+++|+|++.+|++++.+ .+++|+++..... .. .......
T Consensus 212 ~s~~~dg~i~iwd~~-~~~~~~~~~--~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~------~~-~~~~~~~ 280 (319)
T 3frx_A 212 ASAGKDGEIMLWNLA-AKKAMYTLS--AQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLV------DD-LRPEFAG 280 (319)
T ss_dssp EEEETTCEEEEEETT-TTEEEEEEE--CCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEE------EE-ECCCCTT
T ss_pred EEEeCCCeEEEEECC-CCcEEEEec--CCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeee------ec-cCccccc
Confidence 899999999999999 888888885 56789999999999999988755 4999998642110 00 0000011
Q ss_pred ecCCCccceeeeeECCCCceEEEeecCC
Q psy6859 234 EFAKNKTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 234 ~~~~~~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
....|...+.+++|+|||++|++|+.||
T Consensus 281 ~~~~~~~~v~~~~~spdg~~l~sg~~Dg 308 (319)
T 3frx_A 281 YSKAAEPHAVSLAWSADGQTLFAGYTDN 308 (319)
T ss_dssp CCGGGCCCEEEEEECTTSSEEEEEETTS
T ss_pred cccCcCcceeEEEECCCCCEEEEeecCc
Confidence 1123567889999999999999999986
No 21
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=6e-41 Score=261.32 Aligned_cols=231 Identities=16% Similarity=0.192 Sum_probs=198.3
Q ss_pred CeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeee
Q psy6859 5 PITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINM 83 (261)
Q Consensus 5 ~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~ 83 (261)
.|++++|+| +++|++|+.|+.|++||+.+. +.+..+.+|...|.+++|+|++++|++++.|++|++||+.+++....
T Consensus 125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~--~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~ 202 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENR--KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLT 202 (393)
T ss_dssp BEEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCC--cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEE
Confidence 599999999 899999999999999999987 78888999999999999999999999999999999999999988877
Q ss_pred eeccCcceeEEEEee-cCCceeeeeeecCCCCeEEEEEcCCCceeeEEee-----cCCcceEEEEEEeCCCCceEEEEec
Q psy6859 84 IKLDFTPLTVECIHY-LGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKL-----DFTPLTVECIHYLGDAIPTAAVSDQ 157 (261)
Q Consensus 84 ~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (261)
+..+ .....+.+++ ++..++++ +.|+.|++||+++++.+..+.. ..+...+.+++|+|++.. +++++
T Consensus 203 ~~~~-~~v~~~~~~~~~~~~l~~~----s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~--l~s~s 275 (393)
T 1erj_A 203 LSIE-DGVTTVAVSPGDGKYIAAG----SLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS--VVSGS 275 (393)
T ss_dssp EECS-SCEEEEEECSTTCCEEEEE----ETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSE--EEEEE
T ss_pred EEcC-CCcEEEEEECCCCCEEEEE----cCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCE--EEEEe
Confidence 7644 3456667777 66666655 8999999999999887776632 235568999999999976 88999
Q ss_pred CCCeEEEEEccCCC------------ccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeee
Q psy6859 158 DSSHVHIYDCKGNG------------TPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFE 225 (261)
Q Consensus 158 ~d~~i~i~d~~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 225 (261)
.|+.|++||++ .. .+...+. +|...|.+++|+|++++|++++.|+.|++||+.
T Consensus 276 ~d~~v~~wd~~-~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~------------- 340 (393)
T 1erj_A 276 LDRSVKLWNLQ-NANNKSDSKTPNSGTCEVTYI-GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK------------- 340 (393)
T ss_dssp TTSEEEEEEC----------------CEEEEEE-CCSSCEEEEEECGGGCEEEEEETTSEEEEEETT-------------
T ss_pred CCCEEEEEECC-CCCCcccccCCCCCcceEEEe-cccCcEEEEEECCCCCEEEEEeCCCeEEEEECC-------------
Confidence 99999999997 42 2344565 899999999999999999999999999999984
Q ss_pred cccccceeecCCCccceeeeeECC------CCceEEEeecCC
Q psy6859 226 SKLDTDLFEFAKNKTYPSGLSFSP------DGNKFVTISMDR 261 (261)
Q Consensus 226 ~~~~~~~~~~~~~~~~v~~~~~s~------~~~~l~s~~~Dg 261 (261)
+++++..+.+|...|.+++|+| ++++|++||.||
T Consensus 341 --~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg 380 (393)
T 1erj_A 341 --SGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDC 380 (393)
T ss_dssp --TCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTS
T ss_pred --CCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCC
Confidence 4677888999999999999886 789999999996
No 22
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.8e-41 Score=276.89 Aligned_cols=250 Identities=13% Similarity=0.142 Sum_probs=206.7
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCC----CcEEEEEc
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASD----KAMKVFDV 75 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----g~v~~wd~ 75 (261)
||.+.|++++|+| +++||+|+.|++|+|||+.+........+.+|.++|.+++|+|++++|++++.+ +.|++||
T Consensus 57 ~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd- 135 (611)
T 1nr0_A 57 EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD- 135 (611)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT-
T ss_pred CCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee-
Confidence 7999999999999 999999999999999999764435566788999999999999999999998865 3677777
Q ss_pred cccceeeeeeccCcceeEEEEeecCCc-eeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEE
Q psy6859 76 INFDMINMIKLDFTPLTVECIHYLGDA-IPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAV 154 (261)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (261)
.++....+..+...+..+.++|++.. ++++ +.|++|++||.++++.+..+.. +...|.+++|+|++.. ++
T Consensus 136 -~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~----s~D~~v~lwd~~~~~~~~~l~~--H~~~V~~v~fspdg~~--la 206 (611)
T 1nr0_A 136 -TGTSNGNLTGQARAMNSVDFKPSRPFRIISG----SDDNTVAIFEGPPFKFKSTFGE--HTKFVHSVRYNPDGSL--FA 206 (611)
T ss_dssp -TCCBCBCCCCCSSCEEEEEECSSSSCEEEEE----ETTSCEEEEETTTBEEEEEECC--CSSCEEEEEECTTSSE--EE
T ss_pred -CCCCcceecCCCCCceEEEECCCCCeEEEEE----eCCCeEEEEECCCCeEeeeecc--ccCceEEEEECCCCCE--EE
Confidence 45666777778888889999988764 5444 8999999999998877777654 5568999999999975 89
Q ss_pred EecCCCeEEEEEccCCCccceeecc------CcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCC---------
Q psy6859 155 SDQDSSHVHIYDCKGNGTPLHVLDR------LHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFP--------- 219 (261)
Q Consensus 155 ~~~~d~~i~i~d~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--------- 219 (261)
+++.|++|++||+. +++.+..+.. +|...|.+++|+|++++|++++.|++|++||+++++....
T Consensus 207 s~s~D~~i~lwd~~-~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~ 285 (611)
T 1nr0_A 207 STGGDGTIVLYNGV-DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIED 285 (611)
T ss_dssp EEETTSCEEEEETT-TCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGG
T ss_pred EEECCCcEEEEECC-CCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccc
Confidence 99999999999998 7877777632 6999999999999999999999999999999976532110
Q ss_pred -------------------eeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859 220 -------------------KCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 220 -------------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
....++...+++...+.+|...|++++|+|+|++|++++.||
T Consensus 286 ~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~ 346 (611)
T 1nr0_A 286 QQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEG 346 (611)
T ss_dssp CEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred eeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCC
Confidence 001122333445667789999999999999999999999986
No 23
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.4e-41 Score=255.32 Aligned_cols=240 Identities=15% Similarity=0.173 Sum_probs=186.2
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCC-----ceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEE
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEE-----GIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFD 74 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd 74 (261)
+|.+.|++++|+| +++|++|+.|++|++|++... ..+....+.+|.+.|.+++|+|++++|++++.|++|++||
T Consensus 56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd 135 (330)
T 2hes_X 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE 135 (330)
T ss_dssp CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 4999999999999 899999999999999998532 1256778899999999999999999999999999999999
Q ss_pred cccc----ceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCC--ceeeEEeecCCcceEEEEEEeCCC
Q psy6859 75 VINF----DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGN--DMINMIKLDFTPLTVECIHYLGDA 148 (261)
Q Consensus 75 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 148 (261)
+... +.+..+..+...+..+.+++++..++++ +.|++|++||+.++ +++..+. .+...+.+++|+|+.
T Consensus 136 ~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~----s~D~~i~iW~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~ 209 (330)
T 2hes_X 136 TDESGEEYECISVLQEHSQDVKHVIWHPSEALLASS----SYDDTVRIWKDYDDDWECVAVLN--GHEGTVWSSDFDKTE 209 (330)
T ss_dssp CCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEE----ETTSCEEEEEEETTEEEEEEEEC--CCSSCEEEEEECCSS
T ss_pred ccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEE----cCCCeEEEEECCCCCeeEEEEcc--CCCCcEEEEEecCCC
Confidence 9432 4556667777788888999988877666 89999999998876 3445444 456689999999984
Q ss_pred CceEEEEecCCCeEEEEEccCCC--------ccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCe
Q psy6859 149 IPTAAVSDQDSSHVHIYDCKGNG--------TPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPK 220 (261)
Q Consensus 149 ~~~~~~~~~~d~~i~i~d~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 220 (261)
....+++++.|++|++||++ .+ .....+...|...|.+++|++++ +|++++.||.|++||..++.
T Consensus 210 ~~~~l~s~s~D~~v~iw~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~----- 282 (330)
T 2hes_X 210 GVFRLCSGSDDSTVRVWKYM-GDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGE----- 282 (330)
T ss_dssp SSCEEEEEETTSCEEEEEEE-EECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTE-----
T ss_pred CeeEEEEEeCCCeEEEEEec-CCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCc-----
Confidence 33348899999999999997 43 23444442388999999999765 79999999999999985421
Q ss_pred eeeeecccccce-eecCCCcc-ceeeeeECC--CCceEEEeecCC
Q psy6859 221 CVHFESKLDTDL-FEFAKNKT-YPSGLSFSP--DGNKFVTISMDR 261 (261)
Q Consensus 221 ~~~~~~~~~~~~-~~~~~~~~-~v~~~~~s~--~~~~l~s~~~Dg 261 (261)
.+.+ ....+|.. .|.+++|+| ++++|++||.||
T Consensus 283 --------~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg 319 (330)
T 2hes_X 283 --------WKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDG 319 (330)
T ss_dssp --------EEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTS
T ss_pred --------eEEEeccccccccceEEEEEEecCCCceEEEEecCCC
Confidence 1222 23456877 899999999 789999999996
No 24
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.8e-41 Score=258.86 Aligned_cols=243 Identities=17% Similarity=0.191 Sum_probs=203.4
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeC--CCEEEEEeCCCcEEEEEccc
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYN--GTLLCTVASDKAMKVFDVIN 77 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~v~~wd~~~ 77 (261)
||.++|++++|+| +++|++|+.||.|++|++.....+....+.+|...|++++|+++ +++|++++.||.|++||+.+
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 88 (379)
T 3jrp_A 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN 88 (379)
T ss_dssp ECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEET
T ss_pred CCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCC
Confidence 6999999999999 89999999999999999986555788889999999999999976 89999999999999999998
Q ss_pred cc--eeeeeeccCcceeEEEEeec--CCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeC-------
Q psy6859 78 FD--MINMIKLDFTPLTVECIHYL--GDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLG------- 146 (261)
Q Consensus 78 ~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~------- 146 (261)
++ .+..+..+..++..+.+.++ +..++++ +.|+.|++||+++...........+...+.++.|+|
T Consensus 89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~----~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 164 (379)
T 3jrp_A 89 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVA----SSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 164 (379)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEE----ETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-----
T ss_pred CceeEeeeecCCCcceEEEEeCCCCCCCEEEEe----cCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccc
Confidence 87 56666667777888888888 7777666 899999999999886555555555677899999999
Q ss_pred ------CCCceEEEEecCCCeEEEEEccCCCc----cceeeccCcccCeEEEEEcCC---CCEEEEEcCCCeEEEeeccc
Q psy6859 147 ------DAIPTAAVSDQDSSHVHIYDCKGNGT----PLHVLDRLHTKPVVLIKFNPI---YQVVVSVDKAGILEYWSGYK 213 (261)
Q Consensus 147 ------~~~~~~~~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~~~ 213 (261)
++.. +++++.|+.|++||++ .+. ++..+. .|...|.+++|+|+ +++|++++.||.|++||+++
T Consensus 165 ~~~~~~~~~~--l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~ 240 (379)
T 3jrp_A 165 EHNGTKESRK--FVTGGADNLVKIWKYN-SDAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 240 (379)
T ss_dssp -----CTTCE--EEEEETTSCEEEEEEE-TTTTEEEEEEEEC-CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred cccCCCCCCE--EEEEeCCCeEEEEEec-CCCcceeeEEEEe-cccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence 4654 8889999999999998 543 345665 89999999999999 89999999999999999865
Q ss_pred ccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859 214 QEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
... .....+.....|...|++++|+|+|++|++++.||
T Consensus 241 ~~~----------~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg 278 (379)
T 3jrp_A 241 EQG----------PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN 278 (379)
T ss_dssp TTS----------CCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSS
T ss_pred CCc----------cceeeeeccccCCCcEEEEEEcCCCCEEEEecCCC
Confidence 310 00122333345889999999999999999999886
No 25
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-40 Score=253.76 Aligned_cols=242 Identities=14% Similarity=0.155 Sum_probs=192.2
Q ss_pred CCCCCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEe-ec-cccceeEEEEeeCCCEEEEEeCCCcEEEEEccc-
Q psy6859 1 MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHF-RS-HLGVIHSICTNYNGTLLCTVASDKAMKVFDVIN- 77 (261)
Q Consensus 1 gH~~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~- 77 (261)
||+++|++++|+|+ +|++|+.|++|++|++..........+ .+ |...|.+++|+|++++|++++.|++|++||+..
T Consensus 12 ~h~~~v~~~~~s~~-~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~ 90 (330)
T 2hes_X 12 LYKEKIWSFDFSQG-ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEES 90 (330)
T ss_dssp CCSSCEEEEEEETT-EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC---
T ss_pred cCCCceeeeccCCC-EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccC
Confidence 79999999999987 999999999999999987543555556 44 999999999999999999999999999999853
Q ss_pred ------cceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCC----ceeeEEeecCCcceEEEEEEeCC
Q psy6859 78 ------FDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGN----DMINMIKLDFTPLTVECIHYLGD 147 (261)
Q Consensus 78 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 147 (261)
.+.+..+..+..++..+.++++++.++++ +.|++|++||++.. +.+..+. .+...+.+++|+|+
T Consensus 91 ~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~----s~D~~v~iwd~~~~~~~~~~~~~~~--~h~~~v~~v~~~p~ 164 (330)
T 2hes_X 91 ADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATC----SRDKSVWIWETDESGEEYECISVLQ--EHSQDVKHVIWHPS 164 (330)
T ss_dssp ----CCCEEEEEEC----CEEEEEECTTSCEEEEE----ETTSCEEEEECCTTCCCCEEEEEEC--CCSSCEEEEEECSS
T ss_pred cCccccceeEEEEcCCCCcEEEEEECCCCCEEEEE----eCCCEEEEEeccCCCCCeEEEEEec--cCCCceEEEEECCC
Confidence 34555666777788889999998877776 89999999999532 2334443 35568999999999
Q ss_pred CCceEEEEecCCCeEEEEEccCCC--ccceeeccCcccCeEEEEEcCC--CCEEEEEcCCCeEEEeecccccccCCeeee
Q psy6859 148 AIPTAAVSDQDSSHVHIYDCKGNG--TPLHVLDRLHTKPVVLIKFNPI--YQVVVSVDKAGILEYWSGYKQEFKFPKCVH 223 (261)
Q Consensus 148 ~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 223 (261)
+.. +++++.|++|++||.+ .+ +++..+. +|...|.+++|+|+ +.+|++++.|+.|++||++.......
T Consensus 165 ~~~--l~s~s~D~~i~iW~~~-~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~---- 236 (330)
T 2hes_X 165 EAL--LASSSYDDTVRIWKDY-DDDWECVAVLN-GHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQ---- 236 (330)
T ss_dssp SSE--EEEEETTSCEEEEEEE-TTEEEEEEEEC-CCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSC----
T ss_pred CCE--EEEEcCCCeEEEEECC-CCCeeEEEEcc-CCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcccc----
Confidence 875 8999999999999997 55 5778887 99999999999998 67899999999999999864311000
Q ss_pred eecccccceeecCC-CccceeeeeECCCCceEEEeecCC
Q psy6859 224 FESKLDTDLFEFAK-NKTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 224 ~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
....+...+.+ |...|.+++|+|++ +|++++.||
T Consensus 237 ---~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg 271 (330)
T 2hes_X 237 ---QEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADG 271 (330)
T ss_dssp ---EEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTS
T ss_pred ---ceeEEeeecccccccceEEEEEcCCC-EEEEEeCCC
Confidence 00123444554 89999999999765 899999886
No 26
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=6.8e-41 Score=260.99 Aligned_cols=245 Identities=17% Similarity=0.218 Sum_probs=199.4
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccc------------------cceeEEEEeeCCCEE
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHL------------------GVIHSICTNYNGTLL 61 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~------------------~~v~~~~~~~~~~~l 61 (261)
+|.+.|++++|+| +++|++|+ ++.+++|++.++ +.+..+..|. ..|.+++|+|++++|
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l 138 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDG--SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 138 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTC--CEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCC--CEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEE
Confidence 4899999999999 89999876 689999999886 5555555443 248999999999999
Q ss_pred EEEeCCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEE
Q psy6859 62 CTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVEC 141 (261)
Q Consensus 62 ~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 141 (261)
++++.|+.|++||+.+++.+..+..+...+..+.+++++..++++ +.|++|++||+++++....+.. ...+.+
T Consensus 139 ~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~----s~d~~v~iwd~~~~~~~~~~~~---~~~v~~ 211 (393)
T 1erj_A 139 ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSG----SGDRTVRIWDLRTGQCSLTLSI---EDGVTT 211 (393)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE----ETTSEEEEEETTTTEEEEEEEC---SSCEEE
T ss_pred EEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEe----cCCCcEEEEECCCCeeEEEEEc---CCCcEE
Confidence 999999999999999999988888888888899999998877766 8999999999999988777664 346889
Q ss_pred EEEeC-CCCceEEEEecCCCeEEEEEccCCCccceeec------cCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccc
Q psy6859 142 IHYLG-DAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD------RLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQ 214 (261)
Q Consensus 142 ~~~~~-~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 214 (261)
++++| ++.. +++++.|+.|++||++ +++.+..+. .+|...|.+++|+|++++|++++.|+.|++||+++.
T Consensus 212 ~~~~~~~~~~--l~~~s~d~~v~iwd~~-~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~ 288 (393)
T 1erj_A 212 VAVSPGDGKY--IAAGSLDRAVRVWDSE-TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA 288 (393)
T ss_dssp EEECSTTCCE--EEEEETTSCEEEEETT-TCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred EEEECCCCCE--EEEEcCCCcEEEEECC-CCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 99999 6654 8899999999999998 777776652 268899999999999999999999999999999753
Q ss_pred cccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859 215 EFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
...... .....+.+...+.+|...|.+++|+|++++|++|+.||
T Consensus 289 ~~~~~~---~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~ 332 (393)
T 1erj_A 289 NNKSDS---KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR 332 (393)
T ss_dssp ---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTS
T ss_pred CCcccc---cCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCC
Confidence 211110 00122445667788999999999999999999999986
No 27
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-40 Score=255.35 Aligned_cols=250 Identities=16% Similarity=0.214 Sum_probs=212.4
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD 79 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~ 79 (261)
||+++|++++|+| +++|++++.||.|++|++.+. +.+..+.+|...|.+++|+|++++|++++.||.|++||+.+++
T Consensus 30 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 107 (369)
T 3zwl_B 30 GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG--ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQ 107 (369)
T ss_dssp CCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTC--CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred EeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc--hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 7999999999999 899999999999999999887 7888899999999999999999999999999999999999999
Q ss_pred eeeeeeccCcceeEEEEeecCCceeeeeeecCCC-----CeEEEEEcCCCcee-----------eEEeecCCcceEEEEE
Q psy6859 80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS-----SRVHIYDCKGNDMI-----------NMIKLDFTPLTVECIH 143 (261)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d-----~~i~i~d~~~~~~~-----------~~~~~~~~~~~~~~~~ 143 (261)
.+..+. ...++..+.+.+++..+++. +.+ +.|.+||++..... ..+..+.....+.+++
T Consensus 108 ~~~~~~-~~~~v~~~~~~~~~~~l~~~----~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (369)
T 3zwl_B 108 CVATWK-SPVPVKRVEFSPCGNYFLAI----LDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAG 182 (369)
T ss_dssp EEEEEE-CSSCEEEEEECTTSSEEEEE----ECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEE
T ss_pred EEEEee-cCCCeEEEEEccCCCEEEEe----cCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEE
Confidence 888887 55667888889988877776 566 99999999866432 2223322233889999
Q ss_pred EeCCCCceEEEEecCCCeEEEEEccCC-CccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCC---
Q psy6859 144 YLGDAIPTAAVSDQDSSHVHIYDCKGN-GTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFP--- 219 (261)
Q Consensus 144 ~~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--- 219 (261)
|+|++.. +++++.|+.|++||++ + .+.+..+. .|...|.+++|+|++++|++++.|+.|++||+++......
T Consensus 183 ~~~~~~~--l~~~~~dg~i~i~d~~-~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~ 258 (369)
T 3zwl_B 183 WSTKGKY--IIAGHKDGKISKYDVS-NNYEYVDSID-LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYET 258 (369)
T ss_dssp ECGGGCE--EEEEETTSEEEEEETT-TTTEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EcCCCCE--EEEEcCCCEEEEEECC-CCcEeEEEEe-cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecC
Confidence 9999975 7888899999999999 5 78888887 8999999999999999999999999999999986532110
Q ss_pred -------------------------------------eeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859 220 -------------------------------------KCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 220 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
....++..+++.+..+.+|...|++++|+|++++|++++.||
T Consensus 259 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 337 (369)
T 3zwl_B 259 DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDG 337 (369)
T ss_dssp SSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCC
Confidence 122344556677778888999999999999999999999986
No 28
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.3e-40 Score=270.52 Aligned_cols=238 Identities=13% Similarity=0.173 Sum_probs=195.0
Q ss_pred CCCCCeEEEEEcC-CC-eEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccc
Q psy6859 1 MHRSPITHVVVTK-TD-FVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINF 78 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~ 78 (261)
||.+.|++++|+| +. .|++|+.|++|++||.... ++...+.+|.+.|.+++|+|++++|++++.|++|++||+.++
T Consensus 145 gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~--~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g 222 (611)
T 1nr0_A 145 GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF--KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG 222 (611)
T ss_dssp CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB--EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred CCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC--eEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCC
Confidence 7999999999999 65 6999999999999998876 778889999999999999999999999999999999999999
Q ss_pred ceeeeee-------ccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEee-------------------
Q psy6859 79 DMINMIK-------LDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKL------------------- 132 (261)
Q Consensus 79 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~------------------- 132 (261)
+.+..+. .+...+..+.+++++..++++ +.|++|++||+++++.+..+..
T Consensus 223 ~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~----s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 298 (611)
T 1nr0_A 223 TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA----SADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALV 298 (611)
T ss_dssp CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEE----ETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEE
T ss_pred cEeeeeccccccccccCCCEEEEEECCCCCEEEEE----eCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEE
Confidence 8887774 466678888999999887776 8999999999998876554421
Q ss_pred ----------------------cCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccC----------
Q psy6859 133 ----------------------DFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRL---------- 180 (261)
Q Consensus 133 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~---------- 180 (261)
..+...+.+++|+|++.. +++++.|+.|++||+. +++....+...
T Consensus 299 s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~--l~s~s~D~~v~~Wd~~-~~~~~~~~~~~h~~~v~~~~~ 375 (611)
T 1nr0_A 299 SISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKT--LFSADAEGHINSWDIS-TGISNRVFPDVHATMITGIKT 375 (611)
T ss_dssp EEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE--EEEEETTSCEEEEETT-TCCEEECSSCSCSSCEEEEEE
T ss_pred EEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCE--EEEEeCCCcEEEEECC-CCceeeecccCCcceEEEEEE
Confidence 234567899999999986 8899999999999987 54332221000
Q ss_pred -----------------------------------------------------------------------cccCeEEEE
Q psy6859 181 -----------------------------------------------------------------------HTKPVVLIK 189 (261)
Q Consensus 181 -----------------------------------------------------------------------~~~~v~~~~ 189 (261)
|...+.+++
T Consensus 376 s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va 455 (611)
T 1nr0_A 376 TSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVA 455 (611)
T ss_dssp CTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEE
T ss_pred CCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEE
Confidence 223467889
Q ss_pred EcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859 190 FNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 190 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
|+|+|++|++|+.|+.|++||+.++. ...+.. .+|...|++++|+|||++|++++.|+
T Consensus 456 ~spdg~~lasgs~D~~v~lwd~~~~~-------------~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~ 513 (611)
T 1nr0_A 456 LSNDKQFVAVGGQDSKVHVYKLSGAS-------------VSEVKT-IVHPAEITSVAFSNNGAFLVATDQSR 513 (611)
T ss_dssp ECTTSCEEEEEETTSEEEEEEEETTE-------------EEEEEE-EECSSCEEEEEECTTSSEEEEEETTS
T ss_pred EeCCCCEEEEeCCCCeEEEEEccCCc-------------eeeeec-cCCCCceEEEEECCCCCEEEEEcCCC
Confidence 99999999999999999999985421 112233 56999999999999999999999885
No 29
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.7e-40 Score=273.46 Aligned_cols=255 Identities=15% Similarity=0.204 Sum_probs=208.6
Q ss_pred CCCCCeEEEEEcC--CCeEEEecCCCeEEEEeccCCc---eeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEc
Q psy6859 1 MHRSPITHVVVTK--TDFVITASNDGHIKFWKKQEEG---IEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDV 75 (261)
Q Consensus 1 gH~~~v~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~ 75 (261)
||++.|++|+|+| +++|++|+.|++|++|++.... ......+.+|...|.+++|+|++++|++++.|++|++||+
T Consensus 380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~ 459 (694)
T 3dm0_A 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDL 459 (694)
T ss_dssp CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 7999999999998 4689999999999999987632 1456778999999999999999999999999999999999
Q ss_pred cccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEe-ecCCcceEEEEEEeCCCCceEEE
Q psy6859 76 INFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIK-LDFTPLTVECIHYLGDAIPTAAV 154 (261)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 154 (261)
.+++....+..+...+..+.+++++..++++ +.|++|++||+.......... ...+...+.+++|+|++....++
T Consensus 460 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~----s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~ 535 (694)
T 3dm0_A 460 AAGVSTRRFVGHTKDVLSVAFSLDNRQIVSA----SRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIV 535 (694)
T ss_dssp TTTEEEEEEECCSSCEEEEEECTTSSCEEEE----ETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEE
T ss_pred CCCcceeEEeCCCCCEEEEEEeCCCCEEEEE----eCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEE
Confidence 9999999998888889999999999888776 899999999987654332221 12355679999999987545589
Q ss_pred EecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCC---------------
Q psy6859 155 SDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFP--------------- 219 (261)
Q Consensus 155 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--------------- 219 (261)
+++.|+.|++||++ ..++...+. +|...|++++|+|++++|++++.||.|++||+++++....
T Consensus 536 s~s~d~~v~vwd~~-~~~~~~~~~-~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~ 613 (694)
T 3dm0_A 536 SASWDKTVKVWNLS-NCKLRSTLA-GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPN 613 (694)
T ss_dssp EEETTSCEEEEETT-TCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSS
T ss_pred EEeCCCeEEEEECC-CCcEEEEEc-CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCC
Confidence 99999999999999 888888887 9999999999999999999999999999999976532110
Q ss_pred ----------eeeeeecccccceeecCCC-------------------ccceeeeeECCCCceEEEeecCC
Q psy6859 220 ----------KCVHFESKLDTDLFEFAKN-------------------KTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 220 ----------~~~~~~~~~~~~~~~~~~~-------------------~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
....|+..+++.+..+..+ ...+++++|+|+|++|++|+.||
T Consensus 614 ~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg 684 (694)
T 3dm0_A 614 RYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDG 684 (694)
T ss_dssp SSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTS
T ss_pred CcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCC
Confidence 0122344444444433321 12368899999999999999997
No 30
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=8.5e-40 Score=252.27 Aligned_cols=239 Identities=18% Similarity=0.255 Sum_probs=194.1
Q ss_pred CCCCCeEEEEEcC-C---CeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcc
Q psy6859 1 MHRSPITHVVVTK-T---DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVI 76 (261)
Q Consensus 1 gH~~~v~~~~~~~-~---~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~ 76 (261)
+|.+.|++++|+| + ++|++|+.||.|++|++.+.+......+.+|...|.+++|+|++++|++++.||.|++||+.
T Consensus 37 ~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~ 116 (368)
T 3mmy_A 37 SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLS 116 (368)
T ss_dssp CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcC
Confidence 6999999999999 4 79999999999999999874435557888999999999999999999999999999999999
Q ss_pred ccceeeeeeccCcceeEEEE--eecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCC-------------------
Q psy6859 77 NFDMINMIKLDFTPLTVECI--HYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFT------------------- 135 (261)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~------------------- 135 (261)
+++.+... .+..++..+.+ .+++..++++ +.|+.|++||+++++.+..+..+..
T Consensus 117 ~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~----~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 3mmy_A 117 SNQAIQIA-QHDAPVKTIHWIKAPNYSCVMTG----SWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERG 191 (368)
T ss_dssp TTEEEEEE-ECSSCEEEEEEEECSSCEEEEEE----ETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGC
T ss_pred CCCceeec-cccCceEEEEEEeCCCCCEEEEc----cCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCc
Confidence 88877644 45666777777 5666556555 8999999999998877666653321
Q ss_pred --------------------cceEEEEEE--eCCCCceEEEEecCCCeEEEEEccCCC---ccceeeccCccc-------
Q psy6859 136 --------------------PLTVECIHY--LGDAIPTAAVSDQDSSHVHIYDCKGNG---TPLHVLDRLHTK------- 183 (261)
Q Consensus 136 --------------------~~~~~~~~~--~~~~~~~~~~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~~------- 183 (261)
.....++.+ .+......+++++.|+.|++||++ .. ..+..+. .|..
T Consensus 192 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~-~~~~~~~~~~~~-~~~~~~~~~~~ 269 (368)
T 3mmy_A 192 LIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYIN-PPNPAKDNFTFK-CHRSNGTNTSA 269 (368)
T ss_dssp EEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESS-CSCHHHHSEEEE-CSEEC----CC
T ss_pred EEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecC-CCCccccceeee-eeecccccccc
Confidence 011223333 232222337888999999999998 55 4566666 6665
Q ss_pred -----CeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEee
Q psy6859 184 -----PVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTIS 258 (261)
Q Consensus 184 -----~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 258 (261)
+|++++|+|++++|++++.||.|++||++ +++++..+.+|...|.+++|+|+|++|++++
T Consensus 270 ~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~---------------~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s 334 (368)
T 3mmy_A 270 PQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKD---------------ARTKLKTSEQLDQPISACCFNHNGNIFAYAS 334 (368)
T ss_dssp CEEECCEEEEEECTTTCCEEEEETTSCEEEEETT---------------TTEEEEECCCCSSCEEEEEECTTSSCEEEEE
T ss_pred cccccceEEEEEecCCCEEEEEccCCeEEEEECC---------------CCcEEEEecCCCCCceEEEECCCCCeEEEEe
Confidence 79999999999999999999999999994 4677888899999999999999999999999
Q ss_pred cCC
Q psy6859 259 MDR 261 (261)
Q Consensus 259 ~Dg 261 (261)
.|+
T Consensus 335 ~d~ 337 (368)
T 3mmy_A 335 SYD 337 (368)
T ss_dssp CCC
T ss_pred ccc
Confidence 875
No 31
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.5e-40 Score=252.83 Aligned_cols=236 Identities=11% Similarity=0.115 Sum_probs=189.2
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCC---------ceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcE
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEE---------GIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAM 70 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v 70 (261)
+|...|.+++|+| |++|++++ |+++++||.... ..........|...|.+++|+|++ .|++++.||+|
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v 105 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAV 105 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEE
Confidence 3677899999999 88888777 778888863210 001111223366789999999985 78899999999
Q ss_pred EEEEccccceeeeee----ccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeC
Q psy6859 71 KVFDVINFDMINMIK----LDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLG 146 (261)
Q Consensus 71 ~~wd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (261)
++||+.+++.+.... .|...+..+.++++++.++++ +.|++|++||+++++.+..+.. +...|.+++|++
T Consensus 106 ~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sg----s~d~~i~iwd~~~~~~~~~~~~--h~~~V~~~~~~~ 179 (344)
T 4gqb_B 106 ELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSG----SKDICIKVWDLAQQVVLSSYRA--HAAQVTCVAASP 179 (344)
T ss_dssp EEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEE----ETTSCEEEEETTTTEEEEEECC--CSSCEEEEEECS
T ss_pred EEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEE----eCCCeEEEEECCCCcEEEEEcC--cCCceEEEEecC
Confidence 999999887655433 456678888999999887776 8999999999999998888775 456899999999
Q ss_pred CCCceEEEEecCCCeEEEEEccCCCccceeec-cCcccCeEEEEEcCC-CCEEEEEcCCCeEEEeecccccccCCeeeee
Q psy6859 147 DAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD-RLHTKPVVLIKFNPI-YQVVVSVDKAGILEYWSGYKQEFKFPKCVHF 224 (261)
Q Consensus 147 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 224 (261)
++.. ++++++.|++|++||++ +++++..+. ..+...+++++|+|+ +++|++|+.||.|++||++
T Consensus 180 ~~~~-~l~s~s~D~~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~------------ 245 (344)
T 4gqb_B 180 HKDS-VFLSCSEDNRILLWDTR-CPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK------------ 245 (344)
T ss_dssp SCTT-EEEEEETTSCEEEEETT-SSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESC------------
T ss_pred CCCC-ceeeecccccccccccc-ccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECC------------
Confidence 9865 37889999999999999 888887774 245667999999995 5688999999999999994
Q ss_pred ecccccceeecCCCccceeeeeECCCC-ceEEEeecCC
Q psy6859 225 ESKLDTDLFEFAKNKTYPSGLSFSPDG-NKFVTISMDR 261 (261)
Q Consensus 225 ~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~Dg 261 (261)
+++++..+.+|...|++++|+|++ ++|++||.||
T Consensus 246 ---~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~ 280 (344)
T 4gqb_B 246 ---STSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDC 280 (344)
T ss_dssp ---C--CCEEEECCSSCEEEEEECSSSSCCEEEEETTS
T ss_pred ---CCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCC
Confidence 467888999999999999999998 5799999986
No 32
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=8.5e-40 Score=266.64 Aligned_cols=229 Identities=19% Similarity=0.345 Sum_probs=204.3
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD 79 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~ 79 (261)
+|..+|++++|+| +++|++++.|+.|++|+... +.+..+.+|...|.+++|+|++++|++++.|+.|++||. +++
T Consensus 342 ~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~---~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~ 417 (577)
T 2ymu_A 342 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG---QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQ 417 (577)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC---CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCC
T ss_pred CCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC---CEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCC
Confidence 5889999999999 89999999999999999654 577788899999999999999999999999999999995 677
Q ss_pred eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC
Q psy6859 80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS 159 (261)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 159 (261)
.+..+..+..++..+.+++++..++++ +.|+.|++||+. ++.+..+.. +...+.+++|+|++.. +++++.|
T Consensus 418 ~~~~~~~~~~~v~~~~~s~d~~~l~~~----~~d~~v~~w~~~-~~~~~~~~~--~~~~v~~~~~spd~~~--las~~~d 488 (577)
T 2ymu_A 418 LLQTLTGHSSSVWGVAFSPDDQTIASA----SDDKTVKLWNRN-GQLLQTLTG--HSSSVRGVAFSPDGQT--IASASDD 488 (577)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEE----ETTSEEEEEETT-SCEEEEEEC--CSSCEEEEEECTTSCE--EEEEETT
T ss_pred EEEEecCCCCCeEEEEECCCCCEEEEE----cCCCEEEEEECC-CCEEEEEcC--CCCCEEEEEEcCCCCE--EEEEeCC
Confidence 888888788888888999998877766 899999999974 455666654 4557899999999986 8899999
Q ss_pred CeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCc
Q psy6859 160 SHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNK 239 (261)
Q Consensus 160 ~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (261)
+.|++||. +++++..+. +|...|++++|+|++++|++++.||.|++||.. ++++..+.+|.
T Consensus 489 ~~i~iw~~--~~~~~~~~~-~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~----------------~~~~~~~~~h~ 549 (577)
T 2ymu_A 489 KTVKLWNR--NGQLLQTLT-GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN----------------GQLLQTLTGHS 549 (577)
T ss_dssp SEEEEEET--TSCEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSEEEEECTT----------------SCEEEEEECCS
T ss_pred CEEEEEcC--CCCEEEEEe-CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC----------------CCEEEEEcCCC
Confidence 99999995 678888998 999999999999999999999999999999963 56788889999
Q ss_pred cceeeeeECCCCceEEEeecCC
Q psy6859 240 TYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 240 ~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
..|++++|+|||++|+++|.||
T Consensus 550 ~~v~~~~fs~dg~~l~s~~~D~ 571 (577)
T 2ymu_A 550 SSVWGVAFSPDGQTIASASSDK 571 (577)
T ss_dssp SCEEEEEECTTSSCEEEEETTS
T ss_pred CCEEEEEEcCCCCEEEEEeCCC
Confidence 9999999999999999999986
No 33
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=2.1e-39 Score=248.18 Aligned_cols=253 Identities=16% Similarity=0.130 Sum_probs=203.8
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCc--eeeeEEeeccccceeEEEEee--CCCEEEEEeCCCcEEEEEc
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEG--IEFVKHFRSHLGVIHSICTNY--NGTLLCTVASDKAMKVFDV 75 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~--~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~v~~wd~ 75 (261)
||++.|++++|+| +++|++|+.||.|++|++.+.. .+....+.+|...|.+++|+| ++++|++++.||.|++||+
T Consensus 9 gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~ 88 (351)
T 3f3f_A 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEE 88 (351)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEE
T ss_pred ccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEec
Confidence 7999999999999 8999999999999999998642 246777889999999999999 6999999999999999999
Q ss_pred ccc---------ceeeeeeccCcceeEEEEeec--CCceeeeeeecCCCCeEEEEEcCCCceeeEEee-----------c
Q psy6859 76 INF---------DMINMIKLDFTPLTVECIHYL--GDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKL-----------D 133 (261)
Q Consensus 76 ~~~---------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~-----------~ 133 (261)
.++ +.+..+..+..++..+.+.++ +..++++ +.|+.|++||+++++.+..+.. .
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~----~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 89 DPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACL----GNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp CTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEE----ETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred CCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEe----cCCCcEEEecCCChHHhccccccccccccccccC
Confidence 876 446666667777888888888 7777766 8999999999998875544331 1
Q ss_pred CCcceEEEEEEeCC---CCceEEEEecCCCeEEEEEccCCCcc--ceeeccCcccCeEEEEEcCCC----CEEEEEcCCC
Q psy6859 134 FTPLTVECIHYLGD---AIPTAAVSDQDSSHVHIYDCKGNGTP--LHVLDRLHTKPVVLIKFNPIY----QVVVSVDKAG 204 (261)
Q Consensus 134 ~~~~~~~~~~~~~~---~~~~~~~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg 204 (261)
.+...+.++.|+|+ +. .+++++.++.+.+|+.. .++. +..+. .|...|++++|+|++ ++|++++.||
T Consensus 165 ~~~~~~~~~~~~p~~~~~~--~l~~~~~~~~~~~~~~~-~~~~~~~~~~~-~h~~~i~~~~~~p~~~~~~~~l~s~~~dg 240 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPE--KLAVSALEQAIIYQRGK-DGKLHVAAKLP-GHKSLIRSISWAPSIGRWYQLIATGCKDG 240 (351)
T ss_dssp SCSCCCEEEEECCCSSSCC--EEEEEETTEEEEEEECT-TSCEEEEEECC-CCCSCEEEEEECCCSSCSSEEEEEEETTS
T ss_pred CcccceeEEEeccCCCCCc--EEEEecCCCcEEEEccC-CCceeeeeecC-CCCcceeEEEECCCCCCcceEEEEEcCCC
Confidence 24457899999997 54 37888889999888776 5544 66676 899999999999998 8999999999
Q ss_pred eEEEeecccccccCCe-------------------------------eeeeecccccceeecCCCccceeeeeECCCCce
Q psy6859 205 ILEYWSGYKQEFKFPK-------------------------------CVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNK 253 (261)
Q Consensus 205 ~i~iwd~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 253 (261)
.|++||++........ ...++....+.+..+.+|...|++++|+|++++
T Consensus 241 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 320 (351)
T 3f3f_A 241 RIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTI 320 (351)
T ss_dssp CEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCC
T ss_pred eEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCE
Confidence 9999999764211100 000112234677788899999999999999999
Q ss_pred EEEeecCC
Q psy6859 254 FVTISMDR 261 (261)
Q Consensus 254 l~s~~~Dg 261 (261)
|++++.||
T Consensus 321 l~s~~~dg 328 (351)
T 3f3f_A 321 LSSAGDDG 328 (351)
T ss_dssp EEEEETTS
T ss_pred EEEecCCC
Confidence 99999986
No 34
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.2e-41 Score=262.39 Aligned_cols=236 Identities=8% Similarity=0.018 Sum_probs=191.7
Q ss_pred CCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc-
Q psy6859 2 HRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD- 79 (261)
Q Consensus 2 H~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~- 79 (261)
|.++|++++|+| +++|++|+.|+.|++|++.+...+....+.+|...|.+++|+|++++|++++.|+.|++||+.+++
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~ 89 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT 89 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------C
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc
Confidence 567999999999 899999999999999999976546778889999999999999999999999999999999999877
Q ss_pred --eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCce---eeEEeecCCcceEEEEEEeCCCCceEEE
Q psy6859 80 --MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDM---INMIKLDFTPLTVECIHYLGDAIPTAAV 154 (261)
Q Consensus 80 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (261)
....+..+...+..+.++++++.++++ +.|+.|++||+++++. ...+.. .+...+.+++|+|++.. ++
T Consensus 90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~~d~~i~iwd~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~--l~ 162 (377)
T 3dwl_C 90 WKQTLVLLRLNRAATFVRWSPNEDKFAVG----SGARVISVCYFEQENDWWVSKHLKR-PLRSTILSLDWHPNNVL--LA 162 (377)
T ss_dssp CCCEEECCCCSSCEEEEECCTTSSCCEEE----ESSSCEEECCC-----CCCCEEECS-SCCSCEEEEEECTTSSE--EE
T ss_pred eeeeeEecccCCceEEEEECCCCCEEEEE----ecCCeEEEEEECCcccceeeeEeec-ccCCCeEEEEEcCCCCE--EE
Confidence 455555667778888888888877776 8999999999998763 444443 15668999999999875 88
Q ss_pred EecCCCeEEEEEccC-----------------CCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccccccc
Q psy6859 155 SDQDSSHVHIYDCKG-----------------NGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFK 217 (261)
Q Consensus 155 ~~~~d~~i~i~d~~~-----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 217 (261)
+++.|+.|++||++. .++++..+ .|...|++++|+|++++|++++.||.|++||+++
T Consensus 163 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~---- 236 (377)
T 3dwl_C 163 AGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSA---- 236 (377)
T ss_dssp EEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECS----
T ss_pred EEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc--cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCC----
Confidence 999999999999851 23345555 6889999999999999999999999999999964
Q ss_pred CCeeeeeecccccc----eeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859 218 FPKCVHFESKLDTD----LFEFAKNKTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 218 ~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
++. +..+.+|...|.+++|+|++++|++++.|+
T Consensus 237 -----------~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 273 (377)
T 3dwl_C 237 -----------PEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYS 273 (377)
T ss_dssp -----------TTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSS
T ss_pred -----------CCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCc
Confidence 333 677888999999999999999999998764
No 35
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=7.4e-40 Score=251.88 Aligned_cols=237 Identities=12% Similarity=0.131 Sum_probs=188.4
Q ss_pred CCCCCeEEEEEcC-CCeEEEecC------CCeEEEEeccCCce--eeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEE
Q psy6859 1 MHRSPITHVVVTK-TDFVITASN------DGHIKFWKKQEEGI--EFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMK 71 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~------d~~i~iw~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~ 71 (261)
+|+..|++++|+| |++|++|+. |+.|++|+..+... .......+|...|.+++|+|+++ +++++.||+|+
T Consensus 40 ~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~ 118 (357)
T 4g56_B 40 CMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVE 118 (357)
T ss_dssp CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEE
T ss_pred cccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEE
Confidence 5999999999999 999999998 78899998866421 22334456889999999999985 56678899999
Q ss_pred EEEccccceeeeee----ccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCC
Q psy6859 72 VFDVINFDMINMIK----LDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGD 147 (261)
Q Consensus 72 ~wd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (261)
+||+.+++...... .+..++..+.++++++.++++ +.|+.|++||+++++.+..+.. +...+.+++|+++
T Consensus 119 lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sg----s~dg~v~iwd~~~~~~~~~~~~--h~~~v~~v~~s~~ 192 (357)
T 4g56_B 119 LWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSG----GKDFSVKVWDLSQKAVLKSYNA--HSSEVNCVAACPG 192 (357)
T ss_dssp EC--------CCCCEEECCCSSCEEEEEECSSSSEEEEE----ETTSCEEEEETTTTEEEEEECC--CSSCEEEEEECTT
T ss_pred EeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEE----eCCCeEEEEECCCCcEEEEEcC--CCCCEEEEEEccC
Confidence 99998876544322 345678888899999887776 8999999999999988888765 4557899999998
Q ss_pred CCceEEEEecCCCeEEEEEccCCCccceeec-cCcccCeEEEEEcCCC-CEEEEEcCCCeEEEeecccccccCCeeeeee
Q psy6859 148 AIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD-RLHTKPVVLIKFNPIY-QVVVSVDKAGILEYWSGYKQEFKFPKCVHFE 225 (261)
Q Consensus 148 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 225 (261)
+.. ++++++.|+.|++||++ +++++..+. ..+...+++++|+|++ .+|++|+.|+.|++||++
T Consensus 193 ~~~-~~~s~~~dg~v~~wd~~-~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~------------- 257 (357)
T 4g56_B 193 KDT-IFLSCGEDGRILLWDTR-KPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIK------------- 257 (357)
T ss_dssp CSS-CEEEEETTSCEEECCTT-SSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESS-------------
T ss_pred CCc-eeeeeccCCceEEEECC-CCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECC-------------
Confidence 764 37788899999999998 777766554 2567789999999985 588999999999999995
Q ss_pred cccccceeecCCCccceeeeeECCCC-ceEEEeecCC
Q psy6859 226 SKLDTDLFEFAKNKTYPSGLSFSPDG-NKFVTISMDR 261 (261)
Q Consensus 226 ~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~Dg 261 (261)
+++++..+.+|...|++++|+|++ ++||+|+.||
T Consensus 258 --~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~ 292 (357)
T 4g56_B 258 --NPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDC 292 (357)
T ss_dssp --CGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTS
T ss_pred --CCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCC
Confidence 467788899999999999999987 5799999986
No 36
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=7.5e-40 Score=258.38 Aligned_cols=251 Identities=13% Similarity=0.096 Sum_probs=193.2
Q ss_pred CCCCCeEEEEEcC--CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEee-CCCEEEEEeCCCcEEEEEccc
Q psy6859 1 MHRSPITHVVVTK--TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNY-NGTLLCTVASDKAMKVFDVIN 77 (261)
Q Consensus 1 gH~~~v~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~~wd~~~ 77 (261)
+|...|+||+|+| +++||+|+.||.|+|||+.+........+.+|.+.|++|+|+| ++++|++++.||+|++||+++
T Consensus 117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~ 196 (435)
T 4e54_B 117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG 196 (435)
T ss_dssp ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTS
T ss_pred CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccC
Confidence 4788999999999 5689999999999999998765456667788999999999998 688999999999999999976
Q ss_pred cceeeeeeccC--cceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEE
Q psy6859 78 FDMINMIKLDF--TPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVS 155 (261)
Q Consensus 78 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (261)
+........+. .....+.+++++..++++ +.|+.|++||++.. .+..+.. +...|.+++|+|++.. ++++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g----~~dg~i~~wd~~~~-~~~~~~~--h~~~v~~v~~~p~~~~-~~~s 268 (435)
T 4e54_B 197 NILRVFASSDTINIWFCSLDVSASSRMVVTG----DNVGNVILLNMDGK-ELWNLRM--HKKKVTHVALNPCCDW-FLAT 268 (435)
T ss_dssp CEEEEEECCSSCSCCCCCEEEETTTTEEEEE----CSSSBEEEEESSSC-BCCCSBC--CSSCEEEEEECTTCSS-EEEE
T ss_pred CceeEEeccCCCCccEEEEEECCCCCEEEEE----eCCCcEeeeccCcc-eeEEEec--ccceEEeeeecCCCce-EEEE
Confidence 54433333222 234566777888777666 99999999999764 4444443 5568999999999875 4778
Q ss_pred ecCCCeEEEEEccCCCccceeec--cCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccC---------------
Q psy6859 156 DQDSSHVHIYDCKGNGTPLHVLD--RLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKF--------------- 218 (261)
Q Consensus 156 ~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--------------- 218 (261)
++.|+.|++||++ ..+....+. .+|...|++++|+|++++|++++.||.|++||+.+.....
T Consensus 269 ~s~d~~v~iwd~~-~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 347 (435)
T 4e54_B 269 ASVDQTVKIWDLR-QVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTP 347 (435)
T ss_dssp EETTSBCCEEETT-TCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCC
T ss_pred ecCcceeeEEecc-cccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccccccccee
Confidence 8899999999998 554433321 2789999999999999999999999999999987642100
Q ss_pred ------C------------------------eeeeeecccccceeecC-CCccceeee-eECCCCceEEEeecC
Q psy6859 219 ------P------------------------KCVHFESKLDTDLFEFA-KNKTYPSGL-SFSPDGNKFVTISMD 260 (261)
Q Consensus 219 ------~------------------------~~~~~~~~~~~~~~~~~-~~~~~v~~~-~~s~~~~~l~s~~~D 260 (261)
+ ....++..+++.+..+. +|...|.++ +|+|+|++|++|+.+
T Consensus 348 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~d~ 421 (435)
T 4e54_B 348 IKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAMGY 421 (435)
T ss_dssp CBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEECSS
T ss_pred EEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEcCC
Confidence 0 00123444555555544 578888887 699999999998743
No 37
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.5e-39 Score=253.77 Aligned_cols=236 Identities=13% Similarity=0.163 Sum_probs=203.3
Q ss_pred CCCCCeEEEEEcCCCeEEEecCCCeEEEEeccCCc----eeeeEEeeccccceeEEEEeeC----C---CEEEEEeCCCc
Q psy6859 1 MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEG----IEFVKHFRSHLGVIHSICTNYN----G---TLLCTVASDKA 69 (261)
Q Consensus 1 gH~~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~----~~~~~~~~~~~~~v~~~~~~~~----~---~~l~s~~~dg~ 69 (261)
||+++|++++|+| ++|++|+.||.|++|++.+.. ......+.+|...|.+++|+|+ + ++|++++.||.
T Consensus 14 ~h~~~i~~~~~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~ 92 (397)
T 1sq9_A 14 AHDADIFSVSACN-SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGD 92 (397)
T ss_dssp CSSSCEEEEEECS-SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSC
T ss_pred hhhcCeEEEEecC-CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCC
Confidence 7999999999999 899999999999999998863 2267788899999999999999 9 99999999999
Q ss_pred EEEEEccccce-----eeeeecc-----CcceeEEEEe----ecCCc-eeeeeeecCCCCeEEEEEcCC------Cceee
Q psy6859 70 MKVFDVINFDM-----INMIKLD-----FTPLTVECIH----YLGDA-IPTAAVSDQDSSRVHIYDCKG------NDMIN 128 (261)
Q Consensus 70 v~~wd~~~~~~-----~~~~~~~-----~~~~~~~~~~----~~~~~-~~~~~~s~~~d~~i~i~d~~~------~~~~~ 128 (261)
|++||+.+++. ...+..+ ...+..+.+. +++.. ++++ +.|+.|++||+++ ++.+.
T Consensus 93 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~~ 168 (397)
T 1sq9_A 93 LLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVAT----DVKGTTYIWKFHPFADESNSLTLN 168 (397)
T ss_dssp EEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEE----ETTSCEEEEEEESSSSHHHHTTTC
T ss_pred EEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEE----eCCCcEEEEeCCccccccccceee
Confidence 99999998886 7777666 4678888888 88887 6665 8999999999998 66655
Q ss_pred -----EEee-----cCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccC---c---ccCeEEEEEcC
Q psy6859 129 -----MIKL-----DFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRL---H---TKPVVLIKFNP 192 (261)
Q Consensus 129 -----~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~---~---~~~v~~~~~~~ 192 (261)
.+.. ..+...+.+++|+|++ . +++++.|+.|++||++ +++++..+. . | ...|.+++|+|
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~--l~~~~~dg~i~i~d~~-~~~~~~~~~-~~~~h~~~~~~i~~i~~~~ 243 (397)
T 1sq9_A 169 WSPTLELQGTVESPMTPSQFATSVDISERG-L--IATGFNNGTVQISELS-TLRPLYNFE-SQHSMINNSNSIRSVKFSP 243 (397)
T ss_dssp CCCEEEEEEEECCSSSSCCCCCEEEECTTS-E--EEEECTTSEEEEEETT-TTEEEEEEE-CCC---CCCCCEEEEEECS
T ss_pred ccCcceeeeeeccccCCCCCceEEEECCCc-e--EEEEeCCCcEEEEECC-CCceeEEEe-ccccccccCCccceEEECC
Confidence 6654 4456688999999999 4 8889999999999999 888888887 7 8 99999999999
Q ss_pred CCCEEEEEcCC---CeEEEeecccccccCCeeeeeecccccceeecCC-------------CccceeeeeECCCCceEEE
Q psy6859 193 IYQVVVSVDKA---GILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK-------------NKTYPSGLSFSPDGNKFVT 256 (261)
Q Consensus 193 ~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~~~s~~~~~l~s 256 (261)
++++|++++.| +.|++||+++ ++.+..+.. |...|.+++|+|++++|++
T Consensus 244 ~~~~l~~~~~d~~~g~i~i~d~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 308 (397)
T 1sq9_A 244 QGSLLAIAHDSNSFGCITLYETEF---------------GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS 308 (397)
T ss_dssp STTEEEEEEEETTEEEEEEEETTT---------------CCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEE
T ss_pred CCCEEEEEecCCCCceEEEEECCC---------------CcccceeccCcccccccccccccCCcEEEEEECCCCCEEEE
Confidence 99999999999 9999999954 566777777 9999999999999999999
Q ss_pred eecCC
Q psy6859 257 ISMDR 261 (261)
Q Consensus 257 ~~~Dg 261 (261)
++.||
T Consensus 309 ~~~dg 313 (397)
T 1sq9_A 309 AGWDG 313 (397)
T ss_dssp EETTS
T ss_pred EeCCC
Confidence 99886
No 38
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-40 Score=262.63 Aligned_cols=252 Identities=8% Similarity=0.013 Sum_probs=191.8
Q ss_pred CCCCCeEEEEEcCC-------CeEEEecCCCeEEEEeccCCce---------eeeEEeeccccceeEEEEeeCCCEEEEE
Q psy6859 1 MHRSPITHVVVTKT-------DFVITASNDGHIKFWKKQEEGI---------EFVKHFRSHLGVIHSICTNYNGTLLCTV 64 (261)
Q Consensus 1 gH~~~v~~~~~~~~-------~~l~s~~~d~~i~iw~~~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 64 (261)
+|.+.|++++|+|. .+||+++.||+|++|++..... .+...+.+|...|++++|++++ .|++|
T Consensus 205 ~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasg 283 (524)
T 2j04_B 205 HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCG 283 (524)
T ss_dssp ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEE
T ss_pred ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEE
Confidence 36788999999983 5899999999999999976421 1234678899999999999864 89999
Q ss_pred eCCCcEEEEEccccc-eeeeeeccCcceeEE--EEeecC-CceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEE
Q psy6859 65 ASDKAMKVFDVINFD-MINMIKLDFTPLTVE--CIHYLG-DAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVE 140 (261)
Q Consensus 65 ~~dg~v~~wd~~~~~-~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 140 (261)
+.||+|++||+.+++ ....+..+..++..+ .+++++ ..++++ +.|++|++||+++++.+..+..+.....+.
T Consensus 284 s~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~----S~D~tvklWD~~~~~~~~~~~~~~~~~~v~ 359 (524)
T 2j04_B 284 FKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTV----AVDGYFYIFNPKDIATTKTTVSRFRGSNLV 359 (524)
T ss_dssp ETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEE----ETTSEEEEECGGGHHHHCEEEEECSCCSCC
T ss_pred eCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEe----ccCCeEEEEECCCCCcccccccccccCccc
Confidence 999999999998764 444566677777766 334555 455555 899999999999888777666554333478
Q ss_pred EEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCe
Q psy6859 141 CIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPK 220 (261)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 220 (261)
+++|+|++.. +++++.|++|++||++ .+.++..+. +|...|++++|+|++++|++|+.||+|++||+..+.+....
T Consensus 360 ~v~fsp~~~~--l~s~~~d~tv~lwd~~-~~~~~~~l~-gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~ 435 (524)
T 2j04_B 360 PVVYCPQIYS--YIYSDGASSLRAVPSR-AAFAVHPLV-SRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIK 435 (524)
T ss_dssp CEEEETTTTE--EEEECSSSEEEEEETT-CTTCCEEEE-ECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC-
T ss_pred ceEeCCCcCe--EEEeCCCCcEEEEECc-ccccceeee-cCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccc
Confidence 8999999875 7888889999999999 888888887 89999999999999999999999999999997654322100
Q ss_pred ------------eeeeec-----------------ccccceeecCCCccceeeeeECCCCc---eEEEeecCC
Q psy6859 221 ------------CVHFES-----------------KLDTDLFEFAKNKTYPSGLSFSPDGN---KFVTISMDR 261 (261)
Q Consensus 221 ------------~~~~~~-----------------~~~~~~~~~~~~~~~v~~~~~s~~~~---~l~s~~~Dg 261 (261)
...+.. .++..+..+.+|...|++++|+|+++ +||+|+.||
T Consensus 436 ~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g 508 (524)
T 2j04_B 436 NSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAG 508 (524)
T ss_dssp -----CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTS
T ss_pred cCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCc
Confidence 011110 12455677888999999999999964 999999886
No 39
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-39 Score=269.71 Aligned_cols=243 Identities=17% Similarity=0.186 Sum_probs=204.9
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeC--CCEEEEEeCCCcEEEEEccc
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYN--GTLLCTVASDKAMKVFDVIN 77 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~v~~wd~~~ 77 (261)
||.++|++++|+| +++|++|+.||.|++|++.....+....+.+|.++|.+++|+|+ +++|++++.||.|++||+.+
T Consensus 7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~ 86 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN 86 (753)
T ss_dssp -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEET
T ss_pred cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCC
Confidence 7999999999999 89999999999999999986555788889999999999999987 99999999999999999998
Q ss_pred cc--eeeeeeccCcceeEEEEeec--CCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCC------
Q psy6859 78 FD--MINMIKLDFTPLTVECIHYL--GDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGD------ 147 (261)
Q Consensus 78 ~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 147 (261)
++ .+..+..+..++..+.++++ +..++++ +.|+.|++||++++..........++..+.++.|+|.
T Consensus 87 ~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sg----s~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~ 162 (753)
T 3jro_A 87 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVA----SSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (753)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEE----ETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred CcccccccccCCCCCeEEEEECCCCCCCEEEEE----eCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence 86 56666667778888899888 7777666 8999999999998855555555556778999999994
Q ss_pred -------CCceEEEEecCCCeEEEEEccCCC----ccceeeccCcccCeEEEEEcCC---CCEEEEEcCCCeEEEeeccc
Q psy6859 148 -------AIPTAAVSDQDSSHVHIYDCKGNG----TPLHVLDRLHTKPVVLIKFNPI---YQVVVSVDKAGILEYWSGYK 213 (261)
Q Consensus 148 -------~~~~~~~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~~~ 213 (261)
+.. +++|+.||.|++||++ .+ .++..+. .|..+|++++|+|+ +++|++++.||.|++||+.+
T Consensus 163 ~~~~~~d~~~--l~sgs~dg~I~iwd~~-~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 163 EHNGTKESRK--FVTGGADNLVKIWKYN-SDAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp ----CGGGCC--EEEEETTSCEEEEEEE-TTTTEEEEEEEEC-CCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred ccccCCCCCE--EEEEECCCeEEEEecc-CCcccceeeeeec-CCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence 554 8899999999999998 55 4456666 89999999999999 89999999999999999965
Q ss_pred ccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859 214 QEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
+.. .....+.....|...|++++|+|+|++|++++.||
T Consensus 239 ~~~----------~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg 276 (753)
T 3jro_A 239 EQG----------PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN 276 (753)
T ss_dssp SSS----------CCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSS
T ss_pred CCC----------cceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCC
Confidence 311 11123344456889999999999999999999986
No 40
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.4e-38 Score=246.12 Aligned_cols=238 Identities=11% Similarity=0.028 Sum_probs=202.1
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD 79 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~ 79 (261)
.|.++|++++|+| +++|++++.|+.|++|++.+...+....+.+|...|.+++|+|++++|++++.||.|++||+.+++
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 85 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT 85 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCe
Confidence 3889999999999 899999999999999999987444888999999999999999999999999999999999998887
Q ss_pred eeeeee--ccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEE--eecCCcceEEEEEEeCCCCceEEEE
Q psy6859 80 MINMIK--LDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMI--KLDFTPLTVECIHYLGDAIPTAAVS 155 (261)
Q Consensus 80 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (261)
....+. .+...+..+.++++++.++++ +.|+.|++||++..+..... ....+...+.+++|+|++.. +++
T Consensus 86 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--l~~ 159 (372)
T 1k8k_C 86 WKPTLVILRINRAARCVRWAPNEKKFAVG----SGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL--LAA 159 (372)
T ss_dssp EEEEEECCCCSSCEEEEEECTTSSEEEEE----ETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSE--EEE
T ss_pred eeeeEEeecCCCceeEEEECCCCCEEEEE----eCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCE--EEE
Confidence 555443 355567788888888877766 89999999999987642221 12334668999999999875 888
Q ss_pred ecCCCeEEEEEcc-----------------CCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccC
Q psy6859 156 DQDSSHVHIYDCK-----------------GNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKF 218 (261)
Q Consensus 156 ~~~d~~i~i~d~~-----------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 218 (261)
++.|+.|++||++ ..++++..+. .|...|.+++|+|++++|++++.|+.|++||+++
T Consensus 160 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~----- 233 (372)
T 1k8k_C 160 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK----- 233 (372)
T ss_dssp EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-CCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGG-----
T ss_pred EcCCCCEEEEEcccccccccccccccccccchhhheEecC-CCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCC-----
Confidence 8999999999953 1467778887 8999999999999999999999999999999953
Q ss_pred CeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859 219 PKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
++++..+..|...|.+++|+|++++|+++ .||
T Consensus 234 ----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~ 265 (372)
T 1k8k_C 234 ----------KMAVATLASETLPLLAVTFITESSLVAAG-HDC 265 (372)
T ss_dssp ----------TTEEEEEECSSCCEEEEEEEETTEEEEEE-TTS
T ss_pred ----------CceeEEEccCCCCeEEEEEecCCCEEEEE-eCC
Confidence 67788888999999999999999999887 553
No 41
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=3.5e-38 Score=245.02 Aligned_cols=248 Identities=15% Similarity=0.115 Sum_probs=200.9
Q ss_pred CCCCCeEEEEEcC-C-CeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEee-CCCEEEEEeCCCcEEEEEccc
Q psy6859 1 MHRSPITHVVVTK-T-DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNY-NGTLLCTVASDKAMKVFDVIN 77 (261)
Q Consensus 1 gH~~~v~~~~~~~-~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~~wd~~~ 77 (261)
+|.+.|++++|+| + ++|++|+.||.|++|++.+..........+|...|.+++|+| ++++|++++.|+.|++||+..
T Consensus 71 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 150 (383)
T 3ei3_B 71 PFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG 150 (383)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS
T ss_pred CCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC
Confidence 6999999999999 7 899999999999999999874344444457999999999999 789999999999999999985
Q ss_pred cceeeeeeccC---cceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEE
Q psy6859 78 FDMINMIKLDF---TPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAV 154 (261)
Q Consensus 78 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (261)
..+..+..+. ..+..+.+++++..++++ +.|+.|++||++ ++.+..+.. +...+.+++|+|++.. +++
T Consensus 151 -~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~~d~~i~i~d~~-~~~~~~~~~--h~~~v~~~~~~~~~~~-~l~ 221 (383)
T 3ei3_B 151 -SVIQVFAKTDSWDYWYCCVDVSVSRQMLATG----DSTGRLLLLGLD-GHEIFKEKL--HKAKVTHAEFNPRCDW-LMA 221 (383)
T ss_dssp -CEEEEEECCCCSSCCEEEEEEETTTTEEEEE----ETTSEEEEEETT-SCEEEEEEC--SSSCEEEEEECSSCTT-EEE
T ss_pred -CceEEEeccCCCCCCeEEEEECCCCCEEEEE----CCCCCEEEEECC-CCEEEEecc--CCCcEEEEEECCCCCC-EEE
Confidence 4444444332 557788888888877766 899999999994 556666654 4568999999999974 388
Q ss_pred EecCCCeEEEEEccCC----CccceeeccCcccCeEEEEEcC-CCCEEEEEcCCCeEEEeecccccccC-----------
Q psy6859 155 SDQDSSHVHIYDCKGN----GTPLHVLDRLHTKPVVLIKFNP-IYQVVVSVDKAGILEYWSGYKQEFKF----------- 218 (261)
Q Consensus 155 ~~~~d~~i~i~d~~~~----~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~----------- 218 (261)
+++.|+.|++||++ + +.++..+ .|...|++++|+| ++++|++++.|+.|++||+++.....
T Consensus 222 s~~~d~~i~iwd~~-~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 298 (383)
T 3ei3_B 222 TSSVDATVKLWDLR-NIKDKNSYIAEM--PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQ 298 (383)
T ss_dssp EEETTSEEEEEEGG-GCCSTTCEEEEE--ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCT
T ss_pred EEeCCCEEEEEeCC-CCCcccceEEEe--cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccc
Confidence 88999999999998 6 4556666 6999999999999 99999999999999999987643210
Q ss_pred -------------------------------CeeeeeecccccceeecCC--CccceeeeeECCCCceEEEeecCC
Q psy6859 219 -------------------------------PKCVHFESKLDTDLFEFAK--NKTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 219 -------------------------------~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
.....++..+++.+..+.+ |...+..++|+|++++|++++ ||
T Consensus 299 ~~~~~~~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~ 373 (383)
T 3ei3_B 299 HLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GF 373 (383)
T ss_dssp TSCCCCCEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TT
T ss_pred cccceEEeccCCCCceEEEecCCcccccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CC
Confidence 1123456667788888876 557777789999999999997 64
No 42
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=7e-38 Score=238.91 Aligned_cols=233 Identities=16% Similarity=0.163 Sum_probs=203.1
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD 79 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~ 79 (261)
+|...|++++|+| +++|++++.|+.|++|++.+........+..|...|.+++|+|+++++++++.||.|++||+.+++
T Consensus 95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~ 174 (337)
T 1gxr_A 95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT 174 (337)
T ss_dssp CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Confidence 4888999999999 889999999999999999987545777888899999999999999999999999999999999999
Q ss_pred eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC
Q psy6859 80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS 159 (261)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 159 (261)
.+..+..+...+..+.++++++.+++. +.|+.|++||+++++.+..+. .+..+.+++|+|++.. +++++.+
T Consensus 175 ~~~~~~~~~~~i~~~~~~~~~~~l~~~----~~dg~i~~~d~~~~~~~~~~~---~~~~v~~~~~s~~~~~--l~~~~~~ 245 (337)
T 1gxr_A 175 LVRQFQGHTDGASCIDISNDGTKLWTG----GLDNTVRSWDLREGRQLQQHD---FTSQIFSLGYCPTGEW--LAVGMES 245 (337)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEE----ETTSEEEEEETTTTEEEEEEE---CSSCEEEEEECTTSSE--EEEEETT
T ss_pred eeeeeecccCceEEEEECCCCCEEEEE----ecCCcEEEEECCCCceEeeec---CCCceEEEEECCCCCE--EEEEcCC
Confidence 988888777888888999988877766 899999999999998877765 3457899999999975 7788889
Q ss_pred CeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCc
Q psy6859 160 SHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNK 239 (261)
Q Consensus 160 ~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (261)
+.|++||++ ..+.. .+. .|...|.+++|+|++++|++++.||.|++||+.+ ++.+.. ..|.
T Consensus 246 ~~i~~~~~~-~~~~~-~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~---------------~~~~~~-~~~~ 306 (337)
T 1gxr_A 246 SNVEVLHVN-KPDKY-QLH-LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY---------------GASIFQ-SKES 306 (337)
T ss_dssp SCEEEEETT-SSCEE-EEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT---------------CCEEEE-EECS
T ss_pred CcEEEEECC-CCCeE-EEc-CCccceeEEEECCCCCEEEEecCCCcEEEEECCC---------------CeEEEE-ecCC
Confidence 999999998 65544 454 7999999999999999999999999999999954 333332 3478
Q ss_pred cceeeeeECCCCceEEEeecCC
Q psy6859 240 TYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 240 ~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
..|.+++|+|++++|++++.||
T Consensus 307 ~~v~~~~~s~~~~~l~~~~~dg 328 (337)
T 1gxr_A 307 SSVLSCDISVDDKYIVTGSGDK 328 (337)
T ss_dssp SCEEEEEECTTSCEEEEEETTS
T ss_pred CcEEEEEECCCCCEEEEecCCC
Confidence 8999999999999999999986
No 43
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.3e-38 Score=257.26 Aligned_cols=229 Identities=19% Similarity=0.348 Sum_probs=203.4
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD 79 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~ 79 (261)
||..+|++++|+| ++.|++++.|+.|++|+... ..+..+.+|...|.+++|+|+++++++++.|+.+++||. +++
T Consensus 301 ~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~---~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~ 376 (577)
T 2ymu_A 301 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG---QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQ 376 (577)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS---CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCC
T ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC---CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCC
Confidence 6999999999999 89999999999999999876 355677889999999999999999999999999999995 677
Q ss_pred eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC
Q psy6859 80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS 159 (261)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 159 (261)
.+..+..+..++..+.++++++.+++. +.|+.|++||. +++.+..+.. +...+.+++|+|++.. +++++.|
T Consensus 377 ~~~~~~~~~~~v~~~~~s~dg~~l~~~----~~d~~v~~~~~-~~~~~~~~~~--~~~~v~~~~~s~d~~~--l~~~~~d 447 (577)
T 2ymu_A 377 LLQTLTGHSSSVRGVAFSPDGQTIASA----SDDKTVKLWNR-NGQLLQTLTG--HSSSVWGVAFSPDDQT--IASASDD 447 (577)
T ss_dssp EEEEEECCSSCEEEEEECTTSSCEEEE----ETTSEEEEECT-TCCEEEEEEC--CSSCEEEEEECTTSSE--EEEEETT
T ss_pred EEEEecCCCCCeEEEEECCCCCEEEEE----eCCCEEEEEeC-CCCEEEEecC--CCCCeEEEEECCCCCE--EEEEcCC
Confidence 888888788888889999999888776 89999999996 4556666654 4557899999999975 8889999
Q ss_pred CeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCc
Q psy6859 160 SHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNK 239 (261)
Q Consensus 160 ~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (261)
+.|++||. +++.+..+. +|...|++++|+|++++|++++.|+.|++||.. ++++..+.+|.
T Consensus 448 ~~v~~w~~--~~~~~~~~~-~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~----------------~~~~~~~~~h~ 508 (577)
T 2ymu_A 448 KTVKLWNR--NGQLLQTLT-GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN----------------GQLLQTLTGHS 508 (577)
T ss_dssp SEEEEEET--TSCEEEEEE-CCSSCEEEEEECTTSCEEEEEETTSEEEEEETT----------------SCEEEEEECCS
T ss_pred CEEEEEEC--CCCEEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC----------------CCEEEEEeCCC
Confidence 99999996 567788887 899999999999999999999999999999953 56788889999
Q ss_pred cceeeeeECCCCceEEEeecCC
Q psy6859 240 TYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 240 ~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
..|++++|+|+|++|++++.||
T Consensus 509 ~~v~~l~~s~dg~~l~s~~~dg 530 (577)
T 2ymu_A 509 SSVRGVAFSPDGQTIASASDDK 530 (577)
T ss_dssp SCEEEEEECTTSSCEEEEETTS
T ss_pred CCEEEEEEcCCCCEEEEEECcC
Confidence 9999999999999999999986
No 44
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.3e-38 Score=242.20 Aligned_cols=200 Identities=16% Similarity=0.223 Sum_probs=183.2
Q ss_pred CCCCCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccce
Q psy6859 1 MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDM 80 (261)
Q Consensus 1 gH~~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~ 80 (261)
||.+.|.++.|+++..+++++.|++|++||+.++ +.+..+.+|.+.|.+++|+|+++++++++.|+.|++||+.+++.
T Consensus 141 ~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~ 218 (340)
T 1got_B 141 GHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETG--QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC 218 (340)
T ss_dssp CCSSCEEEEEEEETTEEEEEETTSCEEEEETTTT--EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSE
T ss_pred CCCccEEEEEECCCCcEEEEECCCcEEEEECCCC--cEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCee
Confidence 6999999999999667999999999999999987 78889999999999999999999999999999999999999999
Q ss_pred eeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCC
Q psy6859 81 INMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS 160 (261)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 160 (261)
+..+..+..++..+.++|++..++++ +.|+.|++||+++++.+..+........+.+++|+|++.. +++|+.|+
T Consensus 219 ~~~~~~h~~~v~~v~~~p~~~~l~s~----s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~--l~~g~~d~ 292 (340)
T 1got_B 219 RQTFTGHESDINAICFFPNGNAFATG----SDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL--LLAGYDDF 292 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEE----ETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSE--EEEEETTS
T ss_pred EEEEcCCcCCEEEEEEcCCCCEEEEE----cCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCE--EEEECCCC
Confidence 99988888889999999998877766 8999999999999887777765444457999999999975 88999999
Q ss_pred eEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEee
Q psy6859 161 HVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWS 210 (261)
Q Consensus 161 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 210 (261)
.|++||+. +++.+..+. +|..+|.+++|+|++++|++++.|+.|++||
T Consensus 293 ~i~vwd~~-~~~~~~~~~-~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 293 NCNVWDAL-KADRAGVLA-GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEEETT-TCCEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred eEEEEEcc-cCcEeeEee-cCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 99999998 888888898 9999999999999999999999999999997
No 45
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.8e-37 Score=242.44 Aligned_cols=252 Identities=11% Similarity=0.160 Sum_probs=202.4
Q ss_pred CCCCCeEEEEEcC--CCeEEEecCCCeEEEEeccCCceeeeEEe-----------eccccceeEEEEee-CCCEEEEEeC
Q psy6859 1 MHRSPITHVVVTK--TDFVITASNDGHIKFWKKQEEGIEFVKHF-----------RSHLGVIHSICTNY-NGTLLCTVAS 66 (261)
Q Consensus 1 gH~~~v~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~-----------~~~~~~v~~~~~~~-~~~~l~s~~~ 66 (261)
+|.++|++++|+| +++|++|+.||.|++|++.+......... .+|...|.+++|+| ++++|++++.
T Consensus 41 ~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 120 (408)
T 4a11_B 41 IHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSF 120 (408)
T ss_dssp CCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEET
T ss_pred ccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeC
Confidence 6999999999998 67999999999999999987532211111 25899999999999 7889999999
Q ss_pred CCcEEEEEccccceeeeeeccCcceeEEEEeecCC---ceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEE
Q psy6859 67 DKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGD---AIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIH 143 (261)
Q Consensus 67 dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 143 (261)
||.|++||+.+++....+... .......+.+.+. .+++. +.++.|++||+++++.+..+.. +...+.+++
T Consensus 121 d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~d~~~~~~~~~~~~--~~~~v~~~~ 193 (408)
T 4a11_B 121 DKTLKVWDTNTLQTADVFNFE-ETVYSHHMSPVSTKHCLVAVG----TRGPKVQLCDLKSGSCSHILQG--HRQEILAVS 193 (408)
T ss_dssp TSEEEEEETTTTEEEEEEECS-SCEEEEEECSSCSSCCEEEEE----ESSSSEEEEESSSSCCCEEECC--CCSCEEEEE
T ss_pred CCeEEEeeCCCCccceeccCC-CceeeeEeecCCCCCcEEEEE----cCCCeEEEEeCCCcceeeeecC--CCCcEEEEE
Confidence 999999999999888887744 3455556655432 44444 8999999999999988877765 455799999
Q ss_pred EeCCCCceEEEEecCCCeEEEEEccCCCccceee---------------ccCcccCeEEEEEcCCCCEEEEEcCCCeEEE
Q psy6859 144 YLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVL---------------DRLHTKPVVLIKFNPIYQVVVSVDKAGILEY 208 (261)
Q Consensus 144 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~---------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 208 (261)
|+|++.+ ++++++.|+.|++||++....++..+ . .|...|.+++|+|++++|++++.||.|++
T Consensus 194 ~~~~~~~-ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 271 (408)
T 4a11_B 194 WSPRYDY-ILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANT-AHNGKVNGLCFTSDGLHLLTVGTDNRMRL 271 (408)
T ss_dssp ECSSCTT-EEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSC-SCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ECCCCCc-EEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccc-cccCceeEEEEcCCCCEEEEecCCCeEEE
Confidence 9999975 37788899999999998333344443 3 68899999999999999999999999999
Q ss_pred eecccccccCC--------------------------------eeeeeecccccceeecCCCccceeeeeECCCCceEEE
Q psy6859 209 WSGYKQEFKFP--------------------------------KCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVT 256 (261)
Q Consensus 209 wd~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 256 (261)
||+.+++.... ....++..+++++..+.+|...|++++|+|++++|++
T Consensus 272 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 351 (408)
T 4a11_B 272 WNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYS 351 (408)
T ss_dssp EETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEE
T ss_pred EECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEE
Confidence 99987542210 1123455677888899999999999999999999999
Q ss_pred eecCC
Q psy6859 257 ISMDR 261 (261)
Q Consensus 257 ~~~Dg 261 (261)
++.||
T Consensus 352 ~~~dg 356 (408)
T 4a11_B 352 GSRDC 356 (408)
T ss_dssp EETTS
T ss_pred ECCCC
Confidence 99986
No 46
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1e-37 Score=237.96 Aligned_cols=233 Identities=15% Similarity=0.182 Sum_probs=198.4
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCc-eeeeEEee--ccccceeEEEEeeCCCEEEEEeCCCcEEEEEcc
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEG-IEFVKHFR--SHLGVIHSICTNYNGTLLCTVASDKAMKVFDVI 76 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~-~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~ 76 (261)
+|.++|++++|+| +++|++++ ||.|++|++.+.. ......+. .|...|.+++|+|++++|++++.|+.|++||+.
T Consensus 49 ~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~ 127 (337)
T 1gxr_A 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA 127 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred cCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECC
Confidence 6999999999999 88999998 9999999998742 12333333 788999999999999999999999999999999
Q ss_pred ccc--eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEE
Q psy6859 77 NFD--MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAV 154 (261)
Q Consensus 77 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (261)
+++ ....+..+...+..+.+.++++.+++. +.|+.|++||+++++.+..+.. +...+.+++|+|++.. ++
T Consensus 128 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~----~~dg~v~~~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~--l~ 199 (337)
T 1gxr_A 128 APTPRIKAELTSSAPACYALAISPDSKVCFSC----CSDGNIAVWDLHNQTLVRQFQG--HTDGASCIDISNDGTK--LW 199 (337)
T ss_dssp CC--EEEEEEECSSSCEEEEEECTTSSEEEEE----ETTSCEEEEETTTTEEEEEECC--CSSCEEEEEECTTSSE--EE
T ss_pred CCCcceeeecccCCCceEEEEECCCCCEEEEE----eCCCcEEEEeCCCCceeeeeec--ccCceEEEEECCCCCE--EE
Confidence 877 455556666677788888888877766 8999999999999988777765 4557899999999975 88
Q ss_pred EecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceee
Q psy6859 155 SDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFE 234 (261)
Q Consensus 155 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 234 (261)
+++.|+.|++||++ +++.+..+ .+...+.+++|+|++++|++++.|+.|++||+++ .+ ...
T Consensus 200 ~~~~dg~i~~~d~~-~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~---------------~~-~~~ 260 (337)
T 1gxr_A 200 TGGLDNTVRSWDLR-EGRQLQQH--DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK---------------PD-KYQ 260 (337)
T ss_dssp EEETTSEEEEEETT-TTEEEEEE--ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTS---------------SC-EEE
T ss_pred EEecCCcEEEEECC-CCceEeee--cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC---------------CC-eEE
Confidence 88899999999999 88888887 4788999999999999999999999999999864 22 345
Q ss_pred cCCCccceeeeeECCCCceEEEeecCC
Q psy6859 235 FAKNKTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 235 ~~~~~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
+..|...|.+++|+|++++|++++.||
T Consensus 261 ~~~~~~~v~~~~~~~~~~~l~~~~~dg 287 (337)
T 1gxr_A 261 LHLHESCVLSLKFAYCGKWFVSTGKDN 287 (337)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EcCCccceeEEEECCCCCEEEEecCCC
Confidence 677999999999999999999999886
No 47
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-38 Score=247.30 Aligned_cols=240 Identities=14% Similarity=0.245 Sum_probs=201.6
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccC--CceeeeEEeeccccceeEEEEeeC-CCEEEEEeCCCcEEEEEcc
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQE--EGIEFVKHFRSHLGVIHSICTNYN-GTLLCTVASDKAMKVFDVI 76 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~--~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~v~~wd~~ 76 (261)
+|...|++++|+| +++|++|+.||.|++|++.. .+.+....+.+|...|.+++|+|+ +++|++++.|+.|++||+.
T Consensus 65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 144 (416)
T 2pm9_A 65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144 (416)
T ss_dssp CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence 4788999999999 89999999999999999987 122577888899999999999998 8999999999999999998
Q ss_pred ccc------eeeee---eccCcceeEEEEeec-CCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCC----cceEEEE
Q psy6859 77 NFD------MINMI---KLDFTPLTVECIHYL-GDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFT----PLTVECI 142 (261)
Q Consensus 77 ~~~------~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~----~~~~~~~ 142 (261)
+++ ....+ ..+...+..+.++++ +..++++ +.|+.|++||+++++.+..+..+.. ...+.++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~----~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~ 220 (416)
T 2pm9_A 145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASA----GSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVV 220 (416)
T ss_dssp TTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEE----SSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEE
T ss_pred CCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEE----cCCCCEEEEECCCCCcceEEeccccccccCCceEEE
Confidence 876 33222 345566778888887 4555554 8999999999999988887765421 5679999
Q ss_pred EEeCCCCceEEEEecCCC---eEEEEEccCCC-ccceeeccCcccCeEEEEEcC-CCCEEEEEcCCCeEEEeeccccccc
Q psy6859 143 HYLGDAIPTAAVSDQDSS---HVHIYDCKGNG-TPLHVLDRLHTKPVVLIKFNP-IYQVVVSVDKAGILEYWSGYKQEFK 217 (261)
Q Consensus 143 ~~~~~~~~~~~~~~~~d~---~i~i~d~~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~ 217 (261)
+|+|++.. ++++++.|+ .|++||++ .+ .++..+...|...|++++|+| ++++|++++.|+.|++||++
T Consensus 221 ~~~~~~~~-~l~~~~~d~~~~~i~~~d~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~----- 293 (416)
T 2pm9_A 221 EWHPKNST-RVATATGSDNDPSILIWDLR-NANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPE----- 293 (416)
T ss_dssp EECSSCTT-EEEEEECCSSSCCCCEEETT-STTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSS-----
T ss_pred EECCCCCC-EEEEEECCCCCceEEEEeCC-CCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCC-----
Confidence 99999754 377788888 99999999 54 566666225899999999999 89999999999999999994
Q ss_pred CCeeeeeecccccceeecCCCccceeeeeECCCC-ceEEEeecCC
Q psy6859 218 FPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDG-NKFVTISMDR 261 (261)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~Dg 261 (261)
+++++..+.+|...|.+++|+|++ ++|++++.||
T Consensus 294 ----------~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~ 328 (416)
T 2pm9_A 294 ----------SAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDN 328 (416)
T ss_dssp ----------SCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSS
T ss_pred ----------CCccceeecCCCCceEEEEECCCCCCEEEEEecCC
Confidence 467788888999999999999999 8999999886
No 48
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-37 Score=242.25 Aligned_cols=234 Identities=14% Similarity=0.160 Sum_probs=200.7
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcc-cc
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVI-NF 78 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~-~~ 78 (261)
+|...|++++|+| +++|++|+.||.|++|++.+. +.+..+.+|...|.+++|+ ++++++++.||.|++||+. ..
T Consensus 132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~ 207 (401)
T 4aez_A 132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ--TKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIAN 207 (401)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC--CEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSS
T ss_pred CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC--eEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCc
Confidence 3788999999999 899999999999999999887 7788889999999999994 5699999999999999998 45
Q ss_pred ceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEec-
Q psy6859 79 DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ- 157 (261)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 157 (261)
..+..+..+...+..+.+++++..++++ +.|+.|++||+++++.+..+.. +...+.+++|+|++..+ +++++
T Consensus 208 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~----~~d~~v~iwd~~~~~~~~~~~~--~~~~v~~~~~~p~~~~l-l~~~~g 280 (401)
T 4aez_A 208 HQIGTLQGHSSEVCGLAWRSDGLQLASG----GNDNVVQIWDARSSIPKFTKTN--HNAAVKAVAWCPWQSNL-LATGGG 280 (401)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEE----ETTSCEEEEETTCSSEEEEECC--CSSCCCEEEECTTSTTE-EEEECC
T ss_pred ceeeEEcCCCCCeeEEEEcCCCCEEEEE----eCCCeEEEccCCCCCccEEecC--CcceEEEEEECCCCCCE-EEEecC
Confidence 6677777778888889999988877766 8999999999999888777654 45578999999988764 45543
Q ss_pred -CCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEE--EcCCCeEEEeecccccccCCeeeeeecccccceee
Q psy6859 158 -DSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVS--VDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFE 234 (261)
Q Consensus 158 -~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 234 (261)
.|+.|++||++ +++++..+. +...|.+++|+|++++|++ |+.||.|++||+.++ .......
T Consensus 281 s~d~~i~i~d~~-~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~-------------~~~~~~~ 344 (401)
T 4aez_A 281 TMDKQIHFWNAA-TGARVNTVD--AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS-------------GLTKQVD 344 (401)
T ss_dssp TTTCEEEEEETT-TCCEEEEEE--CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETT-------------EEEEEEE
T ss_pred CCCCEEEEEECC-CCCEEEEEe--CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCc-------------cceeEEE
Confidence 79999999999 888888884 7788999999999999988 558999999998642 1233445
Q ss_pred cCCCccceeeeeECCCCceEEEeecCC
Q psy6859 235 FAKNKTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 235 ~~~~~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
+.+|...|.+++|+|+|++|++++.||
T Consensus 345 ~~~h~~~v~~~~~s~dg~~l~s~~~dg 371 (401)
T 4aez_A 345 IPAHDTRVLYSALSPDGRILSTAASDE 371 (401)
T ss_dssp EECCSSCCCEEEECTTSSEEEEECTTS
T ss_pred ecCCCCCEEEEEECCCCCEEEEEeCCC
Confidence 678999999999999999999999986
No 49
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.5e-37 Score=238.82 Aligned_cols=200 Identities=16% Similarity=0.257 Sum_probs=181.4
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEee--CCCEEEEEeCCCcEEEEEccc
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNY--NGTLLCTVASDKAMKVFDVIN 77 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~v~~wd~~~ 77 (261)
+|.+.|.+++|+| +..|++++.|++|++||++++ +.+..+.+|...|.+++|+| ++++|++++.||.|++||+++
T Consensus 152 ~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~ 229 (354)
T 2pbi_B 152 MHTNYLSACSFTNSDMQILTASGDGTCALWDVESG--QLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS 229 (354)
T ss_dssp ECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC--CEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT
T ss_pred ccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC--eEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC
Confidence 5899999999999 889999999999999999987 78889999999999999987 568999999999999999999
Q ss_pred cceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEec
Q psy6859 78 FDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ 157 (261)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (261)
++.+..+..+...+..+.++|++..++++ +.|++|++||++..+.+..+........+.+++|+|++.. +++++
T Consensus 230 ~~~~~~~~~h~~~v~~v~~~p~~~~l~s~----s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~--l~~g~ 303 (354)
T 2pbi_B 230 GQCVQAFETHESDVNSVRYYPSGDAFASG----SDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRL--LFAGY 303 (354)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEE----ETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSE--EEEEE
T ss_pred CcEEEEecCCCCCeEEEEEeCCCCEEEEE----eCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCE--EEEEE
Confidence 99999988888888899999998877766 8999999999999877776665444457889999999975 88999
Q ss_pred CCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEee
Q psy6859 158 DSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWS 210 (261)
Q Consensus 158 ~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 210 (261)
.|+.|++||+. +++.+..+. +|...|++++|+|++++|++++.|+.|++|+
T Consensus 304 ~d~~i~vwd~~-~~~~~~~l~-~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 304 NDYTINVWDVL-KGSRVSILF-GHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TTSCEEEEETT-TCSEEEEEC-CCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCcEEEEECC-CCceEEEEE-CCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 99999999998 888888887 9999999999999999999999999999996
No 50
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1e-37 Score=243.36 Aligned_cols=235 Identities=16% Similarity=0.193 Sum_probs=197.7
Q ss_pred CCCCCeEEEEEcCC--------CeEEEecCCCeEEEEeccCCceee-----eEEeecc-----ccceeEEEEe----eCC
Q psy6859 1 MHRSPITHVVVTKT--------DFVITASNDGHIKFWKKQEEGIEF-----VKHFRSH-----LGVIHSICTN----YNG 58 (261)
Q Consensus 1 gH~~~v~~~~~~~~--------~~l~s~~~d~~i~iw~~~~~~~~~-----~~~~~~~-----~~~v~~~~~~----~~~ 58 (261)
+|..+|++++|+|. ++|++++.|+.|++|++.+. +. ...+..| ...|.+++|+ |++
T Consensus 60 ~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 137 (397)
T 1sq9_A 60 VHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITRE--DETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL 137 (397)
T ss_dssp CCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEEC--TTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----
T ss_pred cCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCC--cccccccceeecccccccCCCcEEEEEEeeccCCCC
Confidence 68999999999985 79999999999999999876 33 6777778 5899999999 999
Q ss_pred CE-EEEEeCCCcEEEEEccc------cceee-----eee-------ccCcceeEEEEeecCCceeeeeeecCCCCeEEEE
Q psy6859 59 TL-LCTVASDKAMKVFDVIN------FDMIN-----MIK-------LDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIY 119 (261)
Q Consensus 59 ~~-l~s~~~dg~v~~wd~~~------~~~~~-----~~~-------~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~ 119 (261)
++ |++++.||.|++||+.+ ++.+. .+. .+...+..+.+++++ .+++. +.|+.|++|
T Consensus 138 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~----~~dg~i~i~ 212 (397)
T 1sq9_A 138 SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATG----FNNGTVQIS 212 (397)
T ss_dssp CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEE----CTTSEEEEE
T ss_pred ceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEE----eCCCcEEEE
Confidence 99 99999999999999998 66665 553 245567778888877 65555 899999999
Q ss_pred EcCCCceeeEEee-cCC---cceEEEEEEeCCCCceEEEEecCC---CeEEEEEccCCCccceeeccC------------
Q psy6859 120 DCKGNDMINMIKL-DFT---PLTVECIHYLGDAIPTAAVSDQDS---SHVHIYDCKGNGTPLHVLDRL------------ 180 (261)
Q Consensus 120 d~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~d---~~i~i~d~~~~~~~~~~~~~~------------ 180 (261)
|+++++.+..+.. ..+ ...+.+++|+|++.. +++++.| +.|++||++ +++++..+. .
T Consensus 213 d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~--l~~~~~d~~~g~i~i~d~~-~~~~~~~~~-~~~~~~~~~~~~~ 288 (397)
T 1sq9_A 213 ELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSL--LAIAHDSNSFGCITLYETE-FGERIGSLS-VPTHSSQASLGEF 288 (397)
T ss_dssp ETTTTEEEEEEECCC---CCCCCEEEEEECSSTTE--EEEEEEETTEEEEEEEETT-TCCEEEEEC-BC--------CCB
T ss_pred ECCCCceeEEEeccccccccCCccceEEECCCCCE--EEEEecCCCCceEEEEECC-CCcccceec-cCccccccccccc
Confidence 9999988888775 112 457899999999875 7788888 999999999 888888887 7
Q ss_pred -cccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecC------CC---------------
Q psy6859 181 -HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFA------KN--------------- 238 (261)
Q Consensus 181 -~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--------------- 238 (261)
|...|.+++|+|++++|++++.||.|++||+++ ++.+..+. +|
T Consensus 289 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---------------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 353 (397)
T 1sq9_A 289 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT---------------KERITTLNMHCDDIEIEEDILAVDEHGDSLA 353 (397)
T ss_dssp SBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT---------------TEEEEEEECCGGGCSSGGGCCCBCTTSCBCS
T ss_pred ccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCC---------------CceeEEEecccCcccchhhhhcccccccccc
Confidence 999999999999999999999999999999954 45555565 56
Q ss_pred ccceeeeeECCCC----------ceEEEeecCC
Q psy6859 239 KTYPSGLSFSPDG----------NKFVTISMDR 261 (261)
Q Consensus 239 ~~~v~~~~~s~~~----------~~l~s~~~Dg 261 (261)
...|++++|+|++ ++|++++.||
T Consensus 354 ~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg 386 (397)
T 1sq9_A 354 EPGVFDVKFLKKGWRSGMGADLNESLCCVCLDR 386 (397)
T ss_dssp SCCEEEEEEECTTTSBSTTCTTSCEEEEEETTT
T ss_pred CCceeEEEeccccccccccccccceEEEecCCC
Confidence 8999999999998 7999999986
No 51
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.1e-36 Score=239.34 Aligned_cols=235 Identities=15% Similarity=0.211 Sum_probs=199.2
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccc-
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINF- 78 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~- 78 (261)
+|.+.|++|+|+| +++|++|+.||+|+|||+.++ +.+..+.+|...+.++.++ +.++++++.|+.+++||....
T Consensus 145 ~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~--~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~ 220 (420)
T 4gga_A 145 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ--KRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAE 220 (420)
T ss_dssp STTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSS
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC--cEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccc
Confidence 5788999999999 999999999999999999987 8889999999999988775 569999999999999998764
Q ss_pred ceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceee--EEeecCCcceEEEEEEeCCCCceEEE-E
Q psy6859 79 DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMIN--MIKLDFTPLTVECIHYLGDAIPTAAV-S 155 (261)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 155 (261)
..+..+..+........+.+.+..+++. +.|+.+++||..+++... ......+...+.+++|+|.....++. +
T Consensus 221 ~~~~~~~~h~~~~~~~~~~~~g~~l~s~----~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~ 296 (420)
T 4gga_A 221 HHVATLSGHSQEVCGLRWAPDGRHLASG----GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG 296 (420)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEE----ETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEE
T ss_pred eeeEEecccccceeeeeecCCCCeeeee----eccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEe
Confidence 4556677777788888888888877776 899999999998765321 12233455689999999988765443 4
Q ss_pred ecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEc--CCCeEEEeecccccccCCeeeeeeccccccee
Q psy6859 156 DQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVD--KAGILEYWSGYKQEFKFPKCVHFESKLDTDLF 233 (261)
Q Consensus 156 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 233 (261)
|+.|+.|++||+. +++++..+. +...+.++.|+|+++.+++++ .|+.|++||+. +++++.
T Consensus 297 gs~D~~I~iwd~~-t~~~~~~~~--~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~---------------~~~~v~ 358 (420)
T 4gga_A 297 GTSDRHIRIWNVC-SGACLSAVD--AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYP---------------TMAKVA 358 (420)
T ss_dssp CTTTCEEEEEETT-TTEEEEEEE--CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETT---------------TCCEEE
T ss_pred ecCCCEEEEEeCC-ccccceeec--cccceeeeeecCCCCeEEEEEecCCCEEEEEECC---------------CCcEEE
Confidence 6789999999999 888888885 567799999999999887654 79999999994 478889
Q ss_pred ecCCCccceeeeeECCCCceEEEeecCC
Q psy6859 234 EFAKNKTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 234 ~~~~~~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
.+.+|.+.|++++|+|||++|+|||.||
T Consensus 359 ~l~gH~~~V~~l~~spdg~~l~S~s~D~ 386 (420)
T 4gga_A 359 ELKGHTSRVLSLTMSPDGATVASAAADE 386 (420)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTT
T ss_pred EEcCCCCCEEEEEEcCCCCEEEEEecCC
Confidence 9999999999999999999999999996
No 52
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.8e-37 Score=262.22 Aligned_cols=235 Identities=12% Similarity=0.145 Sum_probs=208.8
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD 79 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~ 79 (261)
||.+.|++++|+| +.+|++++.||.|++||+.++ +.+..+.+|.++|.+++|+|++++|++++.||.|++||+.+++
T Consensus 11 ~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~ 88 (814)
T 3mkq_A 11 NRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ--VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE 88 (814)
T ss_dssp EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT--EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC
T ss_pred cCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCC--ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence 6899999999999 999999999999999999887 7888999999999999999999999999999999999999999
Q ss_pred eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCC-ceeeEEeecCCcceEEEEEEeC-CCCceEEEEec
Q psy6859 80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGN-DMINMIKLDFTPLTVECIHYLG-DAIPTAAVSDQ 157 (261)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 157 (261)
.+..+..+...+..+.+++++..++++ +.|+.|++||++++ .....+.. +...+.+++|+| ++.. +++++
T Consensus 89 ~~~~~~~~~~~v~~~~~s~~~~~l~~~----~~dg~i~vw~~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~~--l~~~~ 160 (814)
T 3mkq_A 89 KVVDFEAHPDYIRSIAVHPTKPYVLSG----SDDLTVKLWNWENNWALEQTFEG--HEHFVMCVAFNPKDPST--FASGC 160 (814)
T ss_dssp EEEEEECCSSCEEEEEECSSSSEEEEE----ETTSEEEEEEGGGTSEEEEEEEC--CSSCEEEEEEETTEEEE--EEEEE
T ss_pred EEEEEecCCCCEEEEEEeCCCCEEEEE----cCCCEEEEEECCCCceEEEEEcC--CCCcEEEEEEEcCCCCE--EEEEe
Confidence 999988888889999999999877766 89999999999887 44555554 455799999999 6643 88889
Q ss_pred CCCeEEEEEccCCCccceeeccCcccCeEEEEEcC--CCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeec
Q psy6859 158 DSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNP--IYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEF 235 (261)
Q Consensus 158 ~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (261)
.|+.|++||+. .+.....+...+...+..++|+| ++++|++++.||.|++||+++ ++.+..+
T Consensus 161 ~dg~v~vwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~---------------~~~~~~~ 224 (814)
T 3mkq_A 161 LDRTVKVWSLG-QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT---------------KSCVATL 224 (814)
T ss_dssp TTSEEEEEETT-CSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTT---------------TEEEEEE
T ss_pred CCCeEEEEECC-CCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC---------------CcEEEEE
Confidence 99999999998 77777777634458899999999 999999999999999999853 6677888
Q ss_pred CCCccceeeeeECCCCceEEEeecCC
Q psy6859 236 AKNKTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 236 ~~~~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
.+|...|.+++|+|++++|++++.||
T Consensus 225 ~~~~~~v~~~~~~~~~~~l~~~~~dg 250 (814)
T 3mkq_A 225 EGHMSNVSFAVFHPTLPIIISGSEDG 250 (814)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEETTS
T ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence 88999999999999999999999886
No 53
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.7e-38 Score=244.97 Aligned_cols=237 Identities=16% Similarity=0.245 Sum_probs=197.1
Q ss_pred CCCCeEEEEEcC-C----CeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEee-CCCEEEEEeCCCcEEEEEc
Q psy6859 2 HRSPITHVVVTK-T----DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNY-NGTLLCTVASDKAMKVFDV 75 (261)
Q Consensus 2 H~~~v~~~~~~~-~----~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~~wd~ 75 (261)
|...|++++|+| + .+|++|+.||.|++||+.+. +.+..+.+|...|.+++|+| ++++|++++.||.|++||+
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~ 145 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM--QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 145 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTC--CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhc--eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEe
Confidence 678899999998 3 38999999999999999987 77888999999999999999 8999999999999999999
Q ss_pred cccceeeee---eccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEee--------------------
Q psy6859 76 INFDMINMI---KLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKL-------------------- 132 (261)
Q Consensus 76 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~-------------------- 132 (261)
.+++.+..+ ..+...+..+.+++++..++++ +.|+.|++||+++++....+..
T Consensus 146 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (366)
T 3k26_A 146 QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSC----GMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHF 221 (366)
T ss_dssp TTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEE----ETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECC
T ss_pred ecCeEEEEecccccccCceeEEEECCCCCEEEEe----cCCCCEEEEECCCCccccccceeEEecCCCCcccccceeecc
Confidence 999888887 4566778888888888877766 8999999999998755433221
Q ss_pred ------cCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCcc--------------ceeeccCcccCeEEEEEcC
Q psy6859 133 ------DFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTP--------------LHVLDRLHTKPVVLIKFNP 192 (261)
Q Consensus 133 ------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~--------------~~~~~~~~~~~v~~~~~~~ 192 (261)
..+...+.+++|+++ ++++++.|+.|++||++ .... +..+. .|...|++++|+|
T Consensus 222 ~~~~~~~~~~~~v~~~~~~~~----~l~~~~~d~~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~ 295 (366)
T 3k26_A 222 PDFSTRDIHRNYVDCVRWLGD----LILSKSCENAIVCWKPG-KMEDDIDKIKPSESNVTILGRFD-YSQCDIWYMRFSM 295 (366)
T ss_dssp CSEEECSSCSSCCCEEEEETT----EEEEECSSSEEEEEEES-STTCCGGGCCTTCCCEEEEEEEE-CSSCCSSCCCCEE
T ss_pred CccccccCCcceEEEEEEcCC----EEEEEecCCEEEEEeCC-CccccccccccCCcchheecccc-ccCCcEEEEEEcC
Confidence 124557889999833 28899999999999998 5433 56665 7888999999999
Q ss_pred C--CCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCC--ccceeeeeECCCCceEEEeecCC
Q psy6859 193 I--YQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKN--KTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 193 ~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
+ +++|++++.||.|++||+.+++. .......+.+| ...|++++|+|++++|++++.||
T Consensus 296 ~~~~~~l~~~~~dg~i~vwd~~~~~~-----------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 357 (366)
T 3k26_A 296 DFWQKMLALGNQVGKLYVWDLEVEDP-----------HKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDA 357 (366)
T ss_dssp CTTSSEEEEECTTSCEEEEECCSSSG-----------GGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred CCCCcEEEEEecCCcEEEEECCCCCC-----------ccccceEEcccccCCceEEEEeCCCCCeEEEEeCCC
Confidence 9 99999999999999999965311 11233466666 79999999999999999999986
No 54
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-37 Score=241.77 Aligned_cols=231 Identities=16% Similarity=0.184 Sum_probs=199.0
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD 79 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~ 79 (261)
+|.+.|++++|+| +++|++|+.||.|++|+.. . +....+.+|...|.+++|+|++++|++++.|+.|++||+.+++
T Consensus 106 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~-~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 182 (425)
T 1r5m_A 106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWNKT-G--ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGT 182 (425)
T ss_dssp --CBCEEEEEECTTSSEEEEEETTSCEEEEETT-S--CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTE
T ss_pred CCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCC-C--CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCc
Confidence 3788999999999 8999999999999999943 3 6777888999999999999999999999999999999999999
Q ss_pred eeeeeeccCcc---------------eeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEE
Q psy6859 80 MINMIKLDFTP---------------LTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHY 144 (261)
Q Consensus 80 ~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 144 (261)
.+..+..+... ...+.+.+++ .+++. +.++.|++||+++++.+..+.. +...+.+++|
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~g~i~~~d~~~~~~~~~~~~--~~~~i~~~~~ 255 (425)
T 1r5m_A 183 VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIP----GPKGAIFVYQITEKTPTGKLIG--HHGPISVLEF 255 (425)
T ss_dssp EEEEECCC---------------CCCBSCCEEEETT-EEEEE----CGGGCEEEEETTCSSCSEEECC--CSSCEEEEEE
T ss_pred EEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEE----cCCCeEEEEEcCCCceeeeecc--CCCceEEEEE
Confidence 88887766554 5556666654 34444 8899999999999888777764 4557899999
Q ss_pred eCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeee
Q psy6859 145 LGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHF 224 (261)
Q Consensus 145 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 224 (261)
+|++.. +++++.|+.|++||++ .++++..+. .|...|.+++|+|++ +|++++.|+.|++||+++
T Consensus 256 ~~~~~~--l~~~~~d~~i~i~d~~-~~~~~~~~~-~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~----------- 319 (425)
T 1r5m_A 256 NDTNKL--LLSASDDGTLRIWHGG-NGNSQNCFY-GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQ----------- 319 (425)
T ss_dssp ETTTTE--EEEEETTSCEEEECSS-SBSCSEEEC-CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTT-----------
T ss_pred CCCCCE--EEEEcCCCEEEEEECC-CCccceEec-CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCC-----------
Confidence 999975 8888899999999999 888888887 899999999999999 999999999999999953
Q ss_pred ecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859 225 ESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 225 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
++.+..+..|...|.+++|+|++++|++++.||
T Consensus 320 ----~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 352 (425)
T 1r5m_A 320 ----NTLLALSIVDGVPIFAGRISQDGQKYAVAFMDG 352 (425)
T ss_dssp ----TEEEEEEECTTCCEEEEEECTTSSEEEEEETTS
T ss_pred ----CcEeEecccCCccEEEEEEcCCCCEEEEEECCC
Confidence 667778888999999999999999999999886
No 55
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1e-37 Score=239.82 Aligned_cols=250 Identities=15% Similarity=0.162 Sum_probs=194.8
Q ss_pred CCCCCeEEEEEcC-C---CeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEE------eeCCCEEEEEeCCCcE
Q psy6859 1 MHRSPITHVVVTK-T---DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICT------NYNGTLLCTVASDKAM 70 (261)
Q Consensus 1 gH~~~v~~~~~~~-~---~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~l~s~~~dg~v 70 (261)
+|..+|++++|+| + ++|++|+.||.|++|++.+.. .....+.+|...|.++.| +|++++|++++.||.|
T Consensus 63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i 141 (357)
T 3i2n_A 63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE-MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTV 141 (357)
T ss_dssp EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS-SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCE
T ss_pred cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC-ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeE
Confidence 4889999999999 3 899999999999999998762 277888999999999955 6789999999999999
Q ss_pred EEEEccccc-eeeeeeccCc----ceeEEE----EeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEE
Q psy6859 71 KVFDVINFD-MINMIKLDFT----PLTVEC----IHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVEC 141 (261)
Q Consensus 71 ~~wd~~~~~-~~~~~~~~~~----~~~~~~----~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 141 (261)
++||+.+++ .+..+..+.. ....+. +++++..+++. +.|+.|++||+++++...... +...+.+
T Consensus 142 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~----~~d~~i~i~d~~~~~~~~~~~---~~~~v~~ 214 (357)
T 3i2n_A 142 KVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAG----YDNGDIKLFDLRNMALRWETN---IKNGVCS 214 (357)
T ss_dssp EEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEE----ETTSEEEEEETTTTEEEEEEE---CSSCEEE
T ss_pred EEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEE----ccCCeEEEEECccCceeeecC---CCCceEE
Confidence 999999876 6666654332 344444 45677766665 889999999999987754433 3457999
Q ss_pred EEEeC---CCCceEEEEecCCCeEEEEEccCCCccceeec----cCcccCeEEEEEcCCCC-EEEEEcCCCeEEEeeccc
Q psy6859 142 IHYLG---DAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD----RLHTKPVVLIKFNPIYQ-VVVSVDKAGILEYWSGYK 213 (261)
Q Consensus 142 ~~~~~---~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~ 213 (261)
+.|+| ++.. +++++.|+.|++||++ +++++..+. ..|...|++++|+|+++ +|++++.||.|++||++.
T Consensus 215 ~~~~~~~~~~~~--l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 291 (357)
T 3i2n_A 215 LEFDRKDISMNK--LVATSLEGKFHVFDMR-TQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEY 291 (357)
T ss_dssp EEESCSSSSCCE--EEEEESTTEEEEEEEE-EEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEEC
T ss_pred EEcCCCCCCCCE--EEEECCCCeEEEEeCc-CCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCC
Confidence 99999 7765 7888899999999998 666655442 27899999999999998 899999999999999975
Q ss_pred ccccCC----eeeeeecccccceeecCCCccceeeeeECCCCceEE-EeecCC
Q psy6859 214 QEFKFP----KCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFV-TISMDR 261 (261)
Q Consensus 214 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~Dg 261 (261)
...... ..........+.+..+.+|...|++++|+|++++|+ +++.||
T Consensus 292 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~ 344 (357)
T 3i2n_A 292 PIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQ 344 (357)
T ss_dssp CSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred CcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCC
Confidence 322110 000000011246777888999999999999999998 798886
No 56
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.4e-37 Score=244.75 Aligned_cols=236 Identities=11% Similarity=0.164 Sum_probs=186.9
Q ss_pred CCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCc---------eeeeEEeeccc------------cceeEEEEeeCC-
Q psy6859 2 HRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEG---------IEFVKHFRSHL------------GVIHSICTNYNG- 58 (261)
Q Consensus 2 H~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~---------~~~~~~~~~~~------------~~v~~~~~~~~~- 58 (261)
|.+.|++++|+| +++||+|+.||.|+||++.+.. .+....+.+|. +.|.+++|+|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 568999999999 9999999999999999998652 12577888998 889999999998
Q ss_pred -CEEEEEeCCCcEEEEEccccceee---------------------------------------e-eeccCcceeEEEEe
Q psy6859 59 -TLLCTVASDKAMKVFDVINFDMIN---------------------------------------M-IKLDFTPLTVECIH 97 (261)
Q Consensus 59 -~~l~s~~~dg~v~~wd~~~~~~~~---------------------------------------~-~~~~~~~~~~~~~~ 97 (261)
.+|++++.|+.|++||+.+++... . ...+...+..+.++
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 186 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN 186 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence 799999999999999998754321 1 13355667788888
Q ss_pred ecCCceeeeeeecCCCCeEEEEEcCC-CceeeEE-----eecCCcceEEEEEEeCCC-CceEEEEecCCCeEEEEEccCC
Q psy6859 98 YLGDAIPTAAVSDQDSSRVHIYDCKG-NDMINMI-----KLDFTPLTVECIHYLGDA-IPTAAVSDQDSSHVHIYDCKGN 170 (261)
Q Consensus 98 ~~~~~~~~~~~s~~~d~~i~i~d~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~~ 170 (261)
+++..+++ + .|+.|++||+++ ++.+..+ ....+...+.+++|+|++ .. +++++.|+.|++||++ +
T Consensus 187 ~~~~~l~s----~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~--l~s~~~dg~i~iwd~~-~ 258 (447)
T 3dw8_B 187 SDYETYLS----A-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNT--FVYSSSKGTIRLCDMR-A 258 (447)
T ss_dssp TTSSEEEE----E-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTE--EEEEETTSCEEEEETT-T
T ss_pred CCCCEEEE----e-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcE--EEEEeCCCeEEEEECc-C
Confidence 88776554 3 699999999994 4444433 233456689999999998 54 8889999999999998 7
Q ss_pred Ccc----ceeeccCccc------------CeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceee
Q psy6859 171 GTP----LHVLDRLHTK------------PVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFE 234 (261)
Q Consensus 171 ~~~----~~~~~~~~~~------------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 234 (261)
++. +..+. .|.. .|.+++|+|++++|++++. +.|++||++. .++++..
T Consensus 259 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~--------------~~~~~~~ 322 (447)
T 3dw8_B 259 SALCDRHSKLFE-EPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNM--------------ENRPVET 322 (447)
T ss_dssp CSSSCTTCEEEC-CC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTC--------------CSSCSCC
T ss_pred CccccceeeEec-cCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCC--------------Cccccce
Confidence 665 67776 6665 8999999999999999998 9999999953 1456666
Q ss_pred cCCCccc---------------eeeeeECCCCceEEEeecCC
Q psy6859 235 FAKNKTY---------------PSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 235 ~~~~~~~---------------v~~~~~s~~~~~l~s~~~Dg 261 (261)
+.+|... +..++|+|++++|++++.||
T Consensus 323 ~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg 364 (447)
T 3dw8_B 323 YQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNN 364 (447)
T ss_dssp EESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTT
T ss_pred eeccccccccccccccccccccceEEEECCCCCEEEEeccCC
Confidence 6666532 23499999999999999986
No 57
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=4.7e-37 Score=242.03 Aligned_cols=252 Identities=14% Similarity=0.186 Sum_probs=199.0
Q ss_pred CCCCCeEEEEEcC--CCeEEEecCCCeEEEEeccC--------CceeeeEEeeccccceeEEEEeeCCC-EEEEEeCCCc
Q psy6859 1 MHRSPITHVVVTK--TDFVITASNDGHIKFWKKQE--------EGIEFVKHFRSHLGVIHSICTNYNGT-LLCTVASDKA 69 (261)
Q Consensus 1 gH~~~v~~~~~~~--~~~l~s~~~d~~i~iw~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~ 69 (261)
+|.+.|++++|+| +.+|++++.||.|++|++.. ........+.+|...|.+++|+|+++ +|++++.||.
T Consensus 126 ~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 205 (430)
T 2xyi_A 126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHT 205 (430)
T ss_dssp EESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSC
T ss_pred cCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCe
Confidence 4889999999999 46899999999999999976 11367788899999999999999988 9999999999
Q ss_pred EEEEEccccce-------eeeeeccCcceeEEEEeec-CCceeeeeeecCCCCeEEEEEcCCC---ceeeEEeecCCcce
Q psy6859 70 MKVFDVINFDM-------INMIKLDFTPLTVECIHYL-GDAIPTAAVSDQDSSRVHIYDCKGN---DMINMIKLDFTPLT 138 (261)
Q Consensus 70 v~~wd~~~~~~-------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~d~~i~i~d~~~~---~~~~~~~~~~~~~~ 138 (261)
|++||+.++.. ...+..+...+..+.+++. +..++++ +.|+.|++||+++. +.+..+.. +...
T Consensus 206 i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~----~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~ 279 (430)
T 2xyi_A 206 ICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSV----ADDQKLMIWDTRNNNTSKPSHTVDA--HTAE 279 (430)
T ss_dssp EEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEE----ETTSEEEEEETTCSCSSSCSEEEEC--CSSC
T ss_pred EEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEE----eCCCeEEEEECCCCCCCcceeEeec--CCCC
Confidence 99999987322 3344456666778888884 4444444 88999999999987 45555543 4567
Q ss_pred EEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCC-EEEEEcCCCeEEEeeccccccc
Q psy6859 139 VECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQ-VVVSVDKAGILEYWSGYKQEFK 217 (261)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~ 217 (261)
+.+++|+|++.+ ++++|+.|+.|++||++....++..+. .|...|++++|+|+++ +|++++.|+.|++||+......
T Consensus 280 v~~i~~~p~~~~-~l~tg~~dg~v~vwd~~~~~~~~~~~~-~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~ 357 (430)
T 2xyi_A 280 VNCLSFNPYSEF-ILATGSADKTVALWDLRNLKLKLHSFE-SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 357 (430)
T ss_dssp EEEEEECSSCTT-EEEEEETTSEEEEEETTCTTSCSEEEE-CCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCC
T ss_pred eEEEEeCCCCCC-EEEEEeCCCeEEEEeCCCCCCCeEEee-cCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccc
Confidence 999999999875 377888999999999994367888887 8999999999999996 6899999999999999652110
Q ss_pred CCeeeeeecccccceeecCCCccceeeeeECCCCc-eEEEeecCC
Q psy6859 218 FPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGN-KFVTISMDR 261 (261)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~Dg 261 (261)
.... .......+.+..+.+|...|++++|+|+++ +|++++.||
T Consensus 358 ~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg 401 (430)
T 2xyi_A 358 QSTE-DAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDN 401 (430)
T ss_dssp CCHH-HHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred cCcc-ccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCC
Confidence 0000 000011356777888999999999999999 899999886
No 58
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=9e-37 Score=235.91 Aligned_cols=249 Identities=12% Similarity=0.072 Sum_probs=197.6
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD 79 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~ 79 (261)
+|...|++++|+| +++|++++.|+.|++|++.+........+..|...|.+++|+|++++|++++.|+.|++||+..++
T Consensus 50 ~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~ 129 (372)
T 1k8k_C 50 EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 129 (372)
T ss_dssp CCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTT
T ss_pred CCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCC
Confidence 6899999999999 899999999999999999887434455557799999999999999999999999999999998876
Q ss_pred e---eeee-eccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcC------------------CCceeeEEeecCCcc
Q psy6859 80 M---INMI-KLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCK------------------GNDMINMIKLDFTPL 137 (261)
Q Consensus 80 ~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~------------------~~~~~~~~~~~~~~~ 137 (261)
. ...+ ..+...+..+.+++++..+++. +.|+.|++||++ .++.+..+.. +..
T Consensus 130 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~----~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 203 (372)
T 1k8k_C 130 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG----SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS--SCG 203 (372)
T ss_dssp TEEEEEEECTTCCSCEEEEEECTTSSEEEEE----ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC--CSS
T ss_pred cceeeeeeecccCCCeeEEEEcCCCCEEEEE----cCCCCEEEEEcccccccccccccccccccchhhheEecCC--CCC
Confidence 3 2233 3345667888888888777666 899999999964 4555555543 455
Q ss_pred eEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc--cc
Q psy6859 138 TVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK--QE 215 (261)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~ 215 (261)
.+.++.|+|++.. +++++.|+.|++||++ +++++..+. .|..+|.+++|+|++++|+++ .|+.|++|++.+ +.
T Consensus 204 ~v~~~~~~~~~~~--l~~~~~d~~i~i~d~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~ 278 (372)
T 1k8k_C 204 WVHGVCFSANGSR--VAWVSHDSTVCLADAD-KKMAVATLA-SETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGK 278 (372)
T ss_dssp CEEEEEECSSSSE--EEEEETTTEEEEEEGG-GTTEEEEEE-CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTE
T ss_pred eEEEEEECCCCCE--EEEEeCCCEEEEEECC-CCceeEEEc-cCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCce
Confidence 7999999999975 8888999999999999 888999998 899999999999999998888 899999999976 42
Q ss_pred ccCCeeee---------------e---ecccccce------eec-CCCccceeeeeEC-CCC---ceEEEeecCC
Q psy6859 216 FKFPKCVH---------------F---ESKLDTDL------FEF-AKNKTYPSGLSFS-PDG---NKFVTISMDR 261 (261)
Q Consensus 216 ~~~~~~~~---------------~---~~~~~~~~------~~~-~~~~~~v~~~~~s-~~~---~~l~s~~~Dg 261 (261)
+....... + + ..++.. ..+ .+|...|++++|+ ++| ++|++++.||
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg 352 (372)
T 1k8k_C 279 LSFGGRLDVPKQSSQRGLTARERFQNLD-KKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDG 352 (372)
T ss_dssp EEECCCCCCC--------CHHHHHHHCC-CCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTS
T ss_pred EEEeeccCccccchhhhcchhhhhhhcc-cccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCC
Confidence 21110000 0 0 011111 233 4899999999966 677 9999999997
No 59
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4.5e-37 Score=241.44 Aligned_cols=245 Identities=11% Similarity=0.118 Sum_probs=191.8
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD 79 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~ 79 (261)
+|.+.|++++|+| +++|++|+.|+.|++||+.+. +.+..+.+|...|.+++|+|++++|++++.|+.|++||+.+++
T Consensus 137 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 214 (420)
T 3vl1_A 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG--SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT 214 (420)
T ss_dssp SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--CCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCC--cCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc
Confidence 6999999999999 899999999999999999987 6778889999999999999999999999999999999999999
Q ss_pred eeeeeecc---CcceeEEEE---------------------eecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCC
Q psy6859 80 MINMIKLD---FTPLTVECI---------------------HYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFT 135 (261)
Q Consensus 80 ~~~~~~~~---~~~~~~~~~---------------------~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~ 135 (261)
.+..+..+ ...+....+ ++++..++++ +.|+.|++||+++++.+..+.. .+
T Consensus 215 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~-~~ 289 (420)
T 3vl1_A 215 TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAG----HVSGVITVHNVFSKEQTIQLPS-KF 289 (420)
T ss_dssp EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEE----ETTSCEEEEETTTCCEEEEECC-TT
T ss_pred eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEE----cCCCeEEEEECCCCceeEEccc-cc
Confidence 88887642 223333333 3445555444 8999999999999887776654 24
Q ss_pred cceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCC-ccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccc
Q psy6859 136 PLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNG-TPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQ 214 (261)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 214 (261)
...+.+++|+|++.. ++++++.||.|++||++ ++ .++..+...|...|.++.+ |++++|++++.|+.|++|++...
T Consensus 290 ~~~v~~~~~~~~~~~-~l~~g~~dg~i~vwd~~-~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 290 TCSCNSLTVDGNNAN-YIYAGYENGMLAQWDLR-SPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp SSCEEEEEECSSCTT-EEEEEETTSEEEEEETT-CTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCT
T ss_pred CCCceeEEEeCCCCC-EEEEEeCCCeEEEEEcC-CCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCC
Confidence 568999999999873 38888999999999998 54 5577776237778888855 57889999999999999998652
Q ss_pred cccCCeeeeeecccccceeecCCCccceeeeeECCCCc---eEEEeecCC
Q psy6859 215 EFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGN---KFVTISMDR 261 (261)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~---~l~s~~~Dg 261 (261)
...... ........+..|...|.+++|+|+++ .|++++.+|
T Consensus 367 ~~~~~~------~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g 410 (420)
T 3vl1_A 367 ESERPA------IEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNN 410 (420)
T ss_dssp TCCSCE------ECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTT
T ss_pred CCCccc------eeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCc
Confidence 110000 00112233557889999999999999 555555543
No 60
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-36 Score=226.28 Aligned_cols=229 Identities=16% Similarity=0.199 Sum_probs=186.2
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccc-
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINF- 78 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~- 78 (261)
||.+.|++++| | +++|++|+.||.|++|++.+. +....+..|...|.+++|+|+++++++++.||.+++|++...
T Consensus 16 ~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~ 92 (313)
T 3odt_A 16 GHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQ--WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATS 92 (313)
T ss_dssp CCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSS--EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCT
T ss_pred CCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCC--EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecC
Confidence 79999999999 7 899999999999999999876 777888889999999999999999999999999999998653
Q ss_pred --ceeeeee--------------------------------------ccCcceeEEEEee-cCCceeeeeeecCCCCeEE
Q psy6859 79 --DMINMIK--------------------------------------LDFTPLTVECIHY-LGDAIPTAAVSDQDSSRVH 117 (261)
Q Consensus 79 --~~~~~~~--------------------------------------~~~~~~~~~~~~~-~~~~~~~~~~s~~~d~~i~ 117 (261)
+.+..+. .+..++..+.+.+ +++.++++ +.|+.|+
T Consensus 93 ~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~----~~d~~i~ 168 (313)
T 3odt_A 93 GEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTA----SADKTIK 168 (313)
T ss_dssp TSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEEE----ETTSCEE
T ss_pred CCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEEE----ECCCCEE
Confidence 2222221 1222333334444 45544444 8899999
Q ss_pred EEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEE
Q psy6859 118 IYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVV 197 (261)
Q Consensus 118 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 197 (261)
+|| ..+....+... +...+.+++++|++. +++++.|+.|++||++ +++++..+. .|...|++++|+|++ .|
T Consensus 169 i~d--~~~~~~~~~~~-~~~~i~~~~~~~~~~---~~~~~~dg~i~i~d~~-~~~~~~~~~-~~~~~i~~~~~~~~~-~l 239 (313)
T 3odt_A 169 LWQ--NDKVIKTFSGI-HNDVVRHLAVVDDGH---FISCSNDGLIKLVDMH-TGDVLRTYE-GHESFVYCIKLLPNG-DI 239 (313)
T ss_dssp EEE--TTEEEEEECSS-CSSCEEEEEEEETTE---EEEEETTSEEEEEETT-TCCEEEEEE-CCSSCEEEEEECTTS-CE
T ss_pred EEe--cCceEEEEecc-CcccEEEEEEcCCCe---EEEccCCCeEEEEECC-chhhhhhhh-cCCceEEEEEEecCC-CE
Confidence 999 34444554432 456899999999986 7788899999999999 889999997 899999999999999 58
Q ss_pred EEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859 198 VSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 198 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
++++.||.|++||+++ ++.+..+..|...|.+++|+|+++ +++++.||
T Consensus 240 ~~~~~dg~v~iwd~~~---------------~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg 287 (313)
T 3odt_A 240 VSCGEDRTVRIWSKEN---------------GSLKQVITLPAISIWSVDCMSNGD-IIVGSSDN 287 (313)
T ss_dssp EEEETTSEEEEECTTT---------------CCEEEEEECSSSCEEEEEECTTSC-EEEEETTS
T ss_pred EEEecCCEEEEEECCC---------------CceeEEEeccCceEEEEEEccCCC-EEEEeCCC
Confidence 8999999999999954 677888888999999999999998 55677775
No 61
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=4.9e-37 Score=234.90 Aligned_cols=238 Identities=11% Similarity=0.014 Sum_probs=191.7
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCc-eeeeEEeeccccceeEEEEeeCCC-EEEEEeCCCcEEEEEc-c
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEG-IEFVKHFRSHLGVIHSICTNYNGT-LLCTVASDKAMKVFDV-I 76 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~v~~wd~-~ 76 (261)
+|.+.|++++|+| +++|++++.|+.|++|++.+.. ......+.+|...|.+++|+|+++ +|++++.||.|++||+ .
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 88 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG 88 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEecc
Confidence 6999999999999 8999999999999999998753 123455568999999999999999 9999999999999999 7
Q ss_pred ccceeeeeec--cCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCC---------CceeeEEeecCCcceEEEEEEe
Q psy6859 77 NFDMINMIKL--DFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKG---------NDMINMIKLDFTPLTVECIHYL 145 (261)
Q Consensus 77 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~---------~~~~~~~~~~~~~~~~~~~~~~ 145 (261)
+++. ..+.. +...+..+.+.+ ++.++++ +.|+.|++||+++ ++++..+. ++..+.+++|+
T Consensus 89 ~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~----~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~ 159 (342)
T 1yfq_A 89 SPSF-QALTNNEANLGICRICKYG-DDKLIAA----SWDGLIEVIDPRNYGDGVIAVKNLNSNNTK---VKNKIFTMDTN 159 (342)
T ss_dssp SSSE-EECBSCCCCSCEEEEEEET-TTEEEEE----ETTSEEEEECHHHHTTBCEEEEESCSSSSS---SCCCEEEEEEC
T ss_pred CCce-EeccccCCCCceEEEEeCC-CCEEEEE----cCCCeEEEEcccccccccccccCCeeeEEe---eCCceEEEEec
Confidence 7655 45555 666777788887 7766665 8999999999987 65555554 45688999999
Q ss_pred CCCCceEEEEecCCCeEEEEEccCC-Ccc-ceeeccCcccCeEEEEEcC-CCCEEEEEcCCCeEEEeecccccccCCeee
Q psy6859 146 GDAIPTAAVSDQDSSHVHIYDCKGN-GTP-LHVLDRLHTKPVVLIKFNP-IYQVVVSVDKAGILEYWSGYKQEFKFPKCV 222 (261)
Q Consensus 146 ~~~~~~~~~~~~~d~~i~i~d~~~~-~~~-~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 222 (261)
|+. +++++.++.|++||++ . ... .......|...+.+++|+| ++++|++++.||.|++|+++.....
T Consensus 160 ~~~----l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~----- 229 (342)
T 1yfq_A 160 SSR----LIVGMNNSQVQWFRLP-LCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDD----- 229 (342)
T ss_dssp SSE----EEEEESTTEEEEEESS-CCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCS-----
T ss_pred CCc----EEEEeCCCeEEEEECC-ccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcc-----
Confidence 988 7788889999999998 5 332 2222226888999999999 9999999999999999998642000
Q ss_pred eeecccccceeecCCCcc---------ceeeeeECCCCceEEEeecCC
Q psy6859 223 HFESKLDTDLFEFAKNKT---------YPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~---------~v~~~~~s~~~~~l~s~~~Dg 261 (261)
...+....+..|.. .|.+++|+|++++|++++.||
T Consensus 230 ----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 273 (342)
T 1yfq_A 230 ----YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDG 273 (342)
T ss_dssp ----TTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTS
T ss_pred ----cccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCc
Confidence 00245555555544 999999999999999999886
No 62
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.1e-37 Score=243.30 Aligned_cols=232 Identities=14% Similarity=0.095 Sum_probs=193.6
Q ss_pred eEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeee
Q psy6859 6 ITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMI 84 (261)
Q Consensus 6 v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~ 84 (261)
+....|+| +++|++|+.||.|++|++.+. +....+.+|.+.|.+++|+|++++|++++.|+.|++||+.+++.+..+
T Consensus 100 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 177 (420)
T 3vl1_A 100 TAVDTAKLQMRRFILGTTEGDIKVLDSNFN--LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL 177 (420)
T ss_dssp EEEEEECSSSCEEEEEETTSCEEEECTTSC--EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE
T ss_pred eEEEEEecCCCEEEEEECCCCEEEEeCCCc--ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE
Confidence 34446778 889999999999999999876 777778899999999999999999999999999999999999999988
Q ss_pred eccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecC-CcceEEEEEE-------------------
Q psy6859 85 KLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDF-TPLTVECIHY------------------- 144 (261)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~------------------- 144 (261)
..+..++..+.+++++..++++ +.|+.|++||+++++.+..+..+. +...+.++.+
T Consensus 178 ~~h~~~v~~~~~~~~~~~l~s~----~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~ 253 (420)
T 3vl1_A 178 IGHRATVTDIAIIDRGRNVLSA----SLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNL 253 (420)
T ss_dssp ECCSSCEEEEEEETTTTEEEEE----ETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTT
T ss_pred cCCCCcEEEEEEcCCCCEEEEE----cCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccce
Confidence 8888889999999998877766 899999999999998888876532 2334444444
Q ss_pred --eCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCC-EEEEEcCCCeEEEeecccccccCCee
Q psy6859 145 --LGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQ-VVVSVDKAGILEYWSGYKQEFKFPKC 221 (261)
Q Consensus 145 --~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~ 221 (261)
+|++.. +++++.||.|++||++ +++.+..+...|...|++++|+|+++ +|++++.||.|++||++++
T Consensus 254 ~~s~~~~~--l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~------- 323 (420)
T 3vl1_A 254 EFGTYGKY--VIAGHVSGVITVHNVF-SKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSP------- 323 (420)
T ss_dssp CSSCTTEE--EEEEETTSCEEEEETT-TCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT-------
T ss_pred EEcCCCCE--EEEEcCCCeEEEEECC-CCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCC-------
Confidence 566654 8889999999999999 77777666536889999999999999 9999999999999999642
Q ss_pred eeeecccccceeecCC-CccceeeeeECCCCceEEEeecCC
Q psy6859 222 VHFESKLDTDLFEFAK-NKTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 222 ~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
..++..+.. |...|.++. .|++++|++++.||
T Consensus 324 -------~~~~~~~~~~~~~~v~~~~-~~~~~~l~s~~~d~ 356 (420)
T 3vl1_A 324 -------ECPVGEFLINEGTPINNVY-FAAGALFVSSGFDT 356 (420)
T ss_dssp -------TSCSEEEEESTTSCEEEEE-EETTEEEEEETTTE
T ss_pred -------cCchhhhhccCCCCceEEE-eCCCCEEEEecCCc
Confidence 234556665 667777775 45788999999885
No 63
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.5e-37 Score=236.87 Aligned_cols=236 Identities=11% Similarity=0.079 Sum_probs=189.5
Q ss_pred CCCCCeEEEEEcC-CC-eEEEecC---CCeEEEEeccCCceeeeEEeeccccceeEEEEeeC---CCEEEEEeCCCcEEE
Q psy6859 1 MHRSPITHVVVTK-TD-FVITASN---DGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYN---GTLLCTVASDKAMKV 72 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~-~l~s~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~s~~~dg~v~~ 72 (261)
||.+.|++++|+| +. ++++|+. |+.|++|++.++....... .+|...|.+++|+|+ +++|++++.||.|++
T Consensus 16 ~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 94 (357)
T 3i2n_A 16 GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLRE-IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHI 94 (357)
T ss_dssp ECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEE-EEESSCEEEEECTTCCTTTCCEEEEETTSCEEE
T ss_pred CCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceee-ecccCcEEEEEEcCCCCCCceEEEecCCCeEEE
Confidence 5999999999999 65 5566766 9999999999864333333 368999999999998 699999999999999
Q ss_pred EEccccc-eeeeeeccCcceeEEEE------eecCCceeeeeeecCCCCeEEEEEcCCCc-eeeEEeecCC--cceEEEE
Q psy6859 73 FDVINFD-MINMIKLDFTPLTVECI------HYLGDAIPTAAVSDQDSSRVHIYDCKGND-MINMIKLDFT--PLTVECI 142 (261)
Q Consensus 73 wd~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~s~~~d~~i~i~d~~~~~-~~~~~~~~~~--~~~~~~~ 142 (261)
||+.+++ .+..+..+...+..+.+ +++++.++++ +.|+.|++||+++++ .+..+..+.. ...+.++
T Consensus 95 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~----~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (357)
T 3i2n_A 95 WNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTG----SRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTV 170 (357)
T ss_dssp ECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEE----ETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEE
T ss_pred EeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEE----eCCCeEEEEeCCCCCCcceeccccCCCCCCceEEE
Confidence 9999887 77777777777766644 4566666665 899999999999886 6666654332 3367888
Q ss_pred E----EeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcC---CCCEEEEEcCCCeEEEeeccccc
Q psy6859 143 H----YLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNP---IYQVVVSVDKAGILEYWSGYKQE 215 (261)
Q Consensus 143 ~----~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~ 215 (261)
. |+|++.. +++++.|+.|++||++ +++..... .|...|.+++|+| ++++|++++.||.|++||++++
T Consensus 171 ~~~~~~~~~~~~--l~~~~~d~~i~i~d~~-~~~~~~~~--~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~- 244 (357)
T 3i2n_A 171 AFGNAYNQEERV--VCAGYDNGDIKLFDLR-NMALRWET--NIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ- 244 (357)
T ss_dssp EEECCCC-CCCE--EEEEETTSEEEEEETT-TTEEEEEE--ECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEE-
T ss_pred EEEeccCCCCCE--EEEEccCCeEEEEECc-cCceeeec--CCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCC-
Confidence 7 6678865 8888999999999998 77765554 6889999999999 8999999999999999999652
Q ss_pred ccCCeeeeeeccccccee-----ecCCCccceeeeeECCCCc-eEEEeecCC
Q psy6859 216 FKFPKCVHFESKLDTDLF-----EFAKNKTYPSGLSFSPDGN-KFVTISMDR 261 (261)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~s~~~~-~l~s~~~Dg 261 (261)
+.+. .+.+|...|++++|+|+++ +|++++.||
T Consensus 245 --------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 282 (357)
T 3i2n_A 245 --------------HPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAG 282 (357)
T ss_dssp --------------ETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS
T ss_pred --------------CcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCC
Confidence 3332 3348999999999999998 899999886
No 64
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=6.1e-37 Score=234.36 Aligned_cols=229 Identities=15% Similarity=0.108 Sum_probs=191.6
Q ss_pred CCCCCeEEEEEcC-CC-eEEEecCCCeEEEEec-cCCceeeeEEeec--cccceeEEEEeeCCCEEEEEeCCCcEEEEEc
Q psy6859 1 MHRSPITHVVVTK-TD-FVITASNDGHIKFWKK-QEEGIEFVKHFRS--HLGVIHSICTNYNGTLLCTVASDKAMKVFDV 75 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~-~l~s~~~d~~i~iw~~-~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~ 75 (261)
+|...|++++|+| ++ +|++|+.||.|++|++ .+. ....+.+ |...|.+++|+| ++++++++.|+.|++||+
T Consensus 54 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~---~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~ 129 (342)
T 1yfq_A 54 RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP---SFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDP 129 (342)
T ss_dssp ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS---SEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECH
T ss_pred ecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCC---ceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcc
Confidence 5889999999999 88 9999999999999999 765 2367778 999999999999 999999999999999999
Q ss_pred cc---------cceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCC-CceeeEEeecCCcceEEEEEEe
Q psy6859 76 IN---------FDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKG-NDMINMIKLDFTPLTVECIHYL 145 (261)
Q Consensus 76 ~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~ 145 (261)
.+ ++.+..+. +...+..+.+.+++ ++++ +.++.|++||+++ ...........+...+.+++|+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~----~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~ 202 (342)
T 1yfq_A 130 RNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVG----MNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALL 202 (342)
T ss_dssp HHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEE----ESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEEC
T ss_pred cccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEE----eCCCeEEEEECCccccccceeeecCCCCceeEEEEC
Confidence 88 77676666 44445555555443 4444 8999999999998 6543333333456689999999
Q ss_pred C-CCCceEEEEecCCCeEEEEEccCCC------ccceeeccCccc---------CeEEEEEcCCCCEEEEEcCCCeEEEe
Q psy6859 146 G-DAIPTAAVSDQDSSHVHIYDCKGNG------TPLHVLDRLHTK---------PVVLIKFNPIYQVVVSVDKAGILEYW 209 (261)
Q Consensus 146 ~-~~~~~~~~~~~~d~~i~i~d~~~~~------~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~~dg~i~iw 209 (261)
| ++.. +++++.||.|++|+++ .. +++..+. .|.. .|.+++|+|++++|++++.||.|++|
T Consensus 203 ~~~~~~--l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw 278 (342)
T 1yfq_A 203 PKEQEG--YACSSIDGRVAVEFFD-DQGDDYNSSKRFAFR-CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW 278 (342)
T ss_dssp SGGGCE--EEEEETTSEEEEEECC-TTCCSTTCTTCEEEE-CCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred CCCCCE--EEEEecCCcEEEEEEc-CCCcccccccceeee-cccccccccccceeEEEEEEcCCCCEEEEecCCceEEEE
Confidence 9 8875 8888899999999998 54 7777886 6654 99999999999999999999999999
Q ss_pred ecccccccCCeeeeeecccccceeecCCC-ccceeeeeECCCCceEEEeecCC
Q psy6859 210 SGYKQEFKFPKCVHFESKLDTDLFEFAKN-KTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 210 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
|+.+ ++.+..+.+| ...|.+++ |++++|++++.||
T Consensus 279 d~~~---------------~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg 314 (342)
T 1yfq_A 279 NLQT---------------RKKIKNFAKFNEDSVVKIA--CSDNILCLATSDD 314 (342)
T ss_dssp ETTT---------------TEEEEECCCCSSSEEEEEE--ECSSEEEEEEECT
T ss_pred cCcc---------------HhHhhhhhcccCCCceEec--CCCCeEEEEecCC
Confidence 9953 6778888888 99999999 9999999999996
No 65
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.6e-36 Score=266.52 Aligned_cols=237 Identities=14% Similarity=0.234 Sum_probs=204.4
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD 79 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~ 79 (261)
||.+.|++++|+| ++++++|+.||+|++|++.++ +.+..+.+|.+.|.+++|+|+++++++++.|+.|++||+.+++
T Consensus 613 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~--~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~ 690 (1249)
T 3sfz_A 613 PHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG--EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGK 690 (1249)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred cccccEEEEEECCCCCEEEEEeCCCeEEEEECCCC--CEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCc
Confidence 6999999999999 999999999999999999987 7888899999999999999999999999999999999999999
Q ss_pred eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC
Q psy6859 80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS 159 (261)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 159 (261)
.+..+..+..++..+.+.++++... +++++.|+.|++||+++++.+..+.. +...+.+++|+|++.. +++++.|
T Consensus 691 ~~~~~~~~~~~v~~~~~~~~~~~~~--l~sg~~d~~v~vwd~~~~~~~~~~~~--h~~~v~~~~~sp~~~~--l~s~s~d 764 (1249)
T 3sfz_A 691 LVHTYDEHSEQVNCCHFTNKSNHLL--LATGSNDFFLKLWDLNQKECRNTMFG--HTNSVNHCRFSPDDEL--LASCSAD 764 (1249)
T ss_dssp EEEEEECCSSCEEEEEECSSSSCCE--EEEEETTSCEEEEETTSSSEEEEECC--CSSCEEEEEECSSTTE--EEEEESS
T ss_pred eEEEEcCCCCcEEEEEEecCCCceE--EEEEeCCCeEEEEECCCcchhheecC--CCCCEEEEEEecCCCE--EEEEECC
Confidence 9999988888888888888544322 22458999999999999988887765 4558999999999985 8899999
Q ss_pred CeEEEEEccCCCccceeec------------------------------------------------------cCcccCe
Q psy6859 160 SHVHIYDCKGNGTPLHVLD------------------------------------------------------RLHTKPV 185 (261)
Q Consensus 160 ~~i~i~d~~~~~~~~~~~~------------------------------------------------------~~~~~~v 185 (261)
|.|++||++ +++....+. .+|...|
T Consensus 765 g~v~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v 843 (1249)
T 3sfz_A 765 GTLRLWDVR-SANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTI 843 (1249)
T ss_dssp SEEEEEEGG-GTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCC
T ss_pred CeEEEEeCC-CCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCce
Confidence 999999997 543322221 1466778
Q ss_pred EEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859 186 VLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 186 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
.+++|+|+++++++++.||.|++||+. ++..+..+.+|...|.+++|+|+|++|++++.||
T Consensus 844 ~~~~~sp~~~~l~~~~~dg~v~vwd~~---------------~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg 904 (1249)
T 3sfz_A 844 QYCDFSPYDHLAVIALSQYCVELWNID---------------SRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQ 904 (1249)
T ss_dssp CEEEECSSTTEEEEECSSSCEEEEETT---------------TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEcC---------------CCceeeecCCCccceEEEEECCCCCEEEEEeCCC
Confidence 888888988888888888999999884 4677888899999999999999999999999986
No 66
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-36 Score=238.13 Aligned_cols=247 Identities=15% Similarity=0.130 Sum_probs=205.6
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccc---------------eeEEEEeeCCCEEEEE
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGV---------------IHSICTNYNGTLLCTV 64 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~---------------v~~~~~~~~~~~l~s~ 64 (261)
+|...|++++|+| +++|++++.|+.|++|++.+. +.+..+..+... +.+++|++++ .++++
T Consensus 147 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 223 (425)
T 1r5m_A 147 FHRAPIVSVKWNKDGTHIISMDVENVTILWNVISG--TVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIP 223 (425)
T ss_dssp CCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTT--EEEEEECCC---------------CCCBSCCEEEETT-EEEEE
T ss_pred CCCccEEEEEECCCCCEEEEEecCCeEEEEECCCC--cEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEE
Confidence 5899999999999 899999999999999999887 777778777766 9999999986 68889
Q ss_pred eCCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEE
Q psy6859 65 ASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHY 144 (261)
Q Consensus 65 ~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 144 (261)
+.||.|++||+.+++.+..+..+..++..+.+++++..+++. +.|+.|++||+++++.+..+.. +...+.++.|
T Consensus 224 ~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~----~~d~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~ 297 (425)
T 1r5m_A 224 GPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSA----SDDGTLRIWHGGNGNSQNCFYG--HSQSIVSASW 297 (425)
T ss_dssp CGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEE----ETTSCEEEECSSSBSCSEEECC--CSSCEEEEEE
T ss_pred cCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEE----cCCCEEEEEECCCCccceEecC--CCccEEEEEE
Confidence 999999999999998888888777888889999988877666 8999999999999888777754 4557899999
Q ss_pred eCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCe----
Q psy6859 145 LGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPK---- 220 (261)
Q Consensus 145 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---- 220 (261)
+|++ .+++++.|+.|++||++ +++++..+. .|...|.+++|+|++++|++++.||.|++||+++.......
T Consensus 298 ~~~~---~l~~~~~d~~i~i~d~~-~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~ 372 (425)
T 1r5m_A 298 VGDD---KVISCSMDGSVRLWSLK-QNTLLALSI-VDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGN 372 (425)
T ss_dssp ETTT---EEEEEETTSEEEEEETT-TTEEEEEEE-CTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------
T ss_pred CCCC---EEEEEeCCCcEEEEECC-CCcEeEecc-cCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecc
Confidence 9998 38888899999999999 888888887 89999999999999999999999999999999754210000
Q ss_pred -eeeeecccccceeecCCCcc--ceeeeeECCCCceEEEeecCC
Q psy6859 221 -CVHFESKLDTDLFEFAKNKT--YPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 221 -~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~Dg 261 (261)
...+.....+.+..+..|.. .|++++|+|++++|++++.||
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 416 (425)
T 1r5m_A 373 RDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQ 416 (425)
T ss_dssp ------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSS
T ss_pred cccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCc
Confidence 00001111236778888876 999999999999999999986
No 67
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-37 Score=244.36 Aligned_cols=251 Identities=16% Similarity=0.179 Sum_probs=186.9
Q ss_pred CCCCCeEEEEEcC--CCeEEEecCCCeEEEEeccC---Cc-eeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEE
Q psy6859 1 MHRSPITHVVVTK--TDFVITASNDGHIKFWKKQE---EG-IEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFD 74 (261)
Q Consensus 1 gH~~~v~~~~~~~--~~~l~s~~~d~~i~iw~~~~---~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd 74 (261)
||.++|++++|+| +++|++|+.||+|++||+.+ .. .+....+ .|.+.|.+++|+|++++|++++.||.|++||
T Consensus 61 ~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd 139 (437)
T 3gre_A 61 NEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLK 139 (437)
T ss_dssp TTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEE
Confidence 6899999999999 57999999999999999876 31 1223333 4899999999999999999999999999999
Q ss_pred cc---ccceeeeeecc------------CcceeEEE--EeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcc
Q psy6859 75 VI---NFDMINMIKLD------------FTPLTVEC--IHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPL 137 (261)
Q Consensus 75 ~~---~~~~~~~~~~~------------~~~~~~~~--~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 137 (261)
+. +++.......+ ......+. +.+++..++++ +.|+.|++||+++++.+..+....+..
T Consensus 140 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~d~~i~iwd~~~~~~~~~~~~~~h~~ 215 (437)
T 3gre_A 140 VNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL----TNLSRVIIFDIRTLERLQIIENSPRHG 215 (437)
T ss_dssp EEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE----ETTSEEEEEETTTCCEEEEEECCGGGC
T ss_pred eccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE----eCCCeEEEEeCCCCeeeEEEccCCCCC
Confidence 95 55444433211 11122222 22345555544 899999999999999999888754566
Q ss_pred eEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEc----CCCCEEEEEcCCCeEEEeeccc
Q psy6859 138 TVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFN----PIYQVVVSVDKAGILEYWSGYK 213 (261)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~dg~i~iwd~~~ 213 (261)
.+.+++|+|++.. +++++.|+.|++||++ .++++..+...|..+|++++|+ |++++|++++.||.|++||+++
T Consensus 216 ~v~~~~~s~~~~~--l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 292 (437)
T 3gre_A 216 AVSSICIDEECCV--LILGTTRGIIDIWDIR-FNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK 292 (437)
T ss_dssp CEEEEEECTTSCE--EEEEETTSCEEEEETT-TTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTT
T ss_pred ceEEEEECCCCCE--EEEEcCCCeEEEEEcC-CccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCC
Confidence 8999999999875 8899999999999999 8888887743577899999655 5678999999999999999976
Q ss_pred ccccCCe--------eeeeeccccc--ceeecCC--CccceeeeeECCCCceEEEeecCC
Q psy6859 214 QEFKFPK--------CVHFESKLDT--DLFEFAK--NKTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 214 ~~~~~~~--------~~~~~~~~~~--~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
++....- ...+... ++ ....+.+ |...|++++|+ ++++|++++.||
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~ 350 (437)
T 3gre_A 293 GHCQYAFINSDEQPSMEHFLPI-EKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATS 350 (437)
T ss_dssp TEEEEEEESSSSCCCGGGGSCB-CSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGT
T ss_pred CcEEEEEEcCCCCCccceeccc-ccccccceecccccCCceEEEEEC-CceEEEecCCCC
Confidence 4321100 0000000 00 0012333 88889999999 779999999886
No 68
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=3e-36 Score=232.41 Aligned_cols=235 Identities=10% Similarity=0.065 Sum_probs=182.4
Q ss_pred CCCCCeEEEEEcCCCeEEE-----------ecCCCeEEEEeccCCce--eeeEEe-----eccccceeEEEEeeCCCEEE
Q psy6859 1 MHRSPITHVVVTKTDFVIT-----------ASNDGHIKFWKKQEEGI--EFVKHF-----RSHLGVIHSICTNYNGTLLC 62 (261)
Q Consensus 1 gH~~~v~~~~~~~~~~l~s-----------~~~d~~i~iw~~~~~~~--~~~~~~-----~~~~~~v~~~~~~~~~~~l~ 62 (261)
+|.+.|.++++++ +.+++ ++.|+.+++|++..... +..... ..+...+.+++|+|||++++
T Consensus 71 ~~~~~v~s~~~~~-~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la 149 (365)
T 4h5i_A 71 DNDDSPTAIDASK-GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAA 149 (365)
T ss_dssp TTSCCCCEEEEET-TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEE
T ss_pred CCCCceEEEEeCC-CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEE
Confidence 4677888887764 34444 45688899999876421 222222 22445688999999999987
Q ss_pred EEe--CCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEE
Q psy6859 63 TVA--SDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVE 140 (261)
Q Consensus 63 s~~--~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 140 (261)
+++ .|++|++||+.+++++..+. +...+..+.++|+++.++++ + ++.+.+|+..+++.+.......+...+.
T Consensus 150 ~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~----s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 223 (365)
T 4h5i_A 150 IASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYI----T-GSSLEVISTVTGSCIARKTDFDKNWSLS 223 (365)
T ss_dssp EEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEE----C-SSCEEEEETTTCCEEEEECCCCTTEEEE
T ss_pred EEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEec----c-ceeEEEEEeccCcceeeeecCCCCCCEE
Confidence 554 78999999999999988887 44567888999999887765 4 6667888888777666555555677899
Q ss_pred EEEEeCCCCceEEEEecCCC----eEEEEEccCCCcc----ceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecc
Q psy6859 141 CIHYLGDAIPTAAVSDQDSS----HVHIYDCKGNGTP----LHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGY 212 (261)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~d~----~i~i~d~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 212 (261)
+++|+|++.. +++++.++ .+++||+. .... ...+. .|..+|++++|+|+|++||+|+.|+.|+|||++
T Consensus 224 ~v~fspdg~~--l~~~s~d~~~~~~i~~~~~~-~~~~~~~~~~~~~-~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~ 299 (365)
T 4h5i_A 224 KINFIADDTV--LIAASLKKGKGIVLTKISIK-SGNTSVLRSKQVT-NRFKGITSMDVDMKGELAVLASNDNSIALVKLK 299 (365)
T ss_dssp EEEEEETTEE--EEEEEESSSCCEEEEEEEEE-TTEEEEEEEEEEE-SSCSCEEEEEECTTSCEEEEEETTSCEEEEETT
T ss_pred EEEEcCCCCE--EEEEecCCcceeEEeecccc-cceecceeeeeec-CCCCCeEeEEECCCCCceEEEcCCCEEEEEECC
Confidence 9999999976 66666565 68889887 4432 34455 789999999999999999999999999999994
Q ss_pred cccccCCeeeeeecccccceee-cCCCccceeeeeECCCCceEEEeecCC
Q psy6859 213 KQEFKFPKCVHFESKLDTDLFE-FAKNKTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
+++++.. +.+|...|++++|||||++||+||.|+
T Consensus 300 ---------------~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~ 334 (365)
T 4h5i_A 300 ---------------DLSMSKIFKQAHSFAITEVTISPDSTYVASVSAAN 334 (365)
T ss_dssp ---------------TTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTS
T ss_pred ---------------CCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCC
Confidence 4677776 578999999999999999999999996
No 69
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=6.1e-37 Score=239.52 Aligned_cols=235 Identities=15% Similarity=0.207 Sum_probs=192.7
Q ss_pred CCCCCeEEEEEcC--CCeEEEecCCCeEEEEeccCCce-----eeeEEeeccccceeEEEEeeCC-CEEEEEeCCCcEEE
Q psy6859 1 MHRSPITHVVVTK--TDFVITASNDGHIKFWKKQEEGI-----EFVKHFRSHLGVIHSICTNYNG-TLLCTVASDKAMKV 72 (261)
Q Consensus 1 gH~~~v~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~v~~ 72 (261)
||.++|++++|+| +++|++|+.||.|++|++.+... +.+..+.+|...|.+++|+|++ ++|++++.|+.|++
T Consensus 79 ~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~i 158 (402)
T 2aq5_A 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILV 158 (402)
T ss_dssp CCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEE
T ss_pred cCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEE
Confidence 6999999999998 57999999999999999987532 4577888999999999999998 69999999999999
Q ss_pred EEccccceeeee--eccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCc
Q psy6859 73 FDVINFDMINMI--KLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIP 150 (261)
Q Consensus 73 wd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (261)
||+.+++.+..+ ..+...+..+.+++++..++++ +.|+.|++||+++++.+..+........+.++.|+|++..
T Consensus 159 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (402)
T 2aq5_A 159 WDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTS----CRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKI 234 (402)
T ss_dssp EETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEE----ETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEE
T ss_pred EECCCCCccEEEecCCCCCceEEEEECCCCCEEEEE----ecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcE
Confidence 999999988888 5667778888999988887776 8999999999999988887732222334788999999864
Q ss_pred eEEEEe---cCCCeEEEEEccCCCc-cceeeccCcccCeEEEEEcCCCCEEE-EEcCCCeEEEeecccccccCCeeeeee
Q psy6859 151 TAAVSD---QDSSHVHIYDCKGNGT-PLHVLDRLHTKPVVLIKFNPIYQVVV-SVDKAGILEYWSGYKQEFKFPKCVHFE 225 (261)
Q Consensus 151 ~~~~~~---~~d~~i~i~d~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~ 225 (261)
+++| +.|+.|++||++ ..+ ++......+...+.+++|+|++++|+ +++.||.|++||+.+
T Consensus 235 --l~~g~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~------------ 299 (402)
T 2aq5_A 235 --LTTGFSRMSERQVALWDTK-HLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITS------------ 299 (402)
T ss_dssp --EEEEECTTCCEEEEEEETT-BCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECS------------
T ss_pred --EEEeccCCCCceEEEEcCc-cccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecC------------
Confidence 7777 789999999998 543 34443325778899999999999886 566899999999964
Q ss_pred cccccc-eeecCC--CccceeeeeECCCCceEEEe
Q psy6859 226 SKLDTD-LFEFAK--NKTYPSGLSFSPDGNKFVTI 257 (261)
Q Consensus 226 ~~~~~~-~~~~~~--~~~~v~~~~~s~~~~~l~s~ 257 (261)
++. +..+.. |...|.+++|+|++.+++++
T Consensus 300 ---~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~ 331 (402)
T 2aq5_A 300 ---EAPFLHYLSMFSSKESQRGMGYMPKRGLEVNK 331 (402)
T ss_dssp ---STTCEEEEEEECCSSCCSEEEECCGGGSCGGG
T ss_pred ---CCcceEeecccccCCcccceEEecccccceec
Confidence 221 333333 56899999999999987754
No 70
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=5.7e-37 Score=236.38 Aligned_cols=249 Identities=11% Similarity=0.102 Sum_probs=198.9
Q ss_pred CCCCCeEEEEEcC-----CCeEEEecCCCeEEEEeccCCceeeeEEeec-----cccceeEEEEeeC----CCEEEEEeC
Q psy6859 1 MHRSPITHVVVTK-----TDFVITASNDGHIKFWKKQEEGIEFVKHFRS-----HLGVIHSICTNYN----GTLLCTVAS 66 (261)
Q Consensus 1 gH~~~v~~~~~~~-----~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~----~~~l~s~~~ 66 (261)
||.++|++++|+| ...+++++.++.|++|++.+. +.+..+.. |...|.+++|+|+ +++|++++.
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 93 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQ--GEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS 93 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGG--GCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCC--cEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence 7999999999997 345777777789999999865 33444433 5578999999998 679999999
Q ss_pred CCcEEEEEccccceeeeeeccCcceeEEEEee-cCCceeeeeeecCCCCeEEEEEcCCCceeeEEee-cCCcceEEEEEE
Q psy6859 67 DKAMKVFDVINFDMINMIKLDFTPLTVECIHY-LGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKL-DFTPLTVECIHY 144 (261)
Q Consensus 67 dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~ 144 (261)
||.|++||+.+++.+..+..+..++..+.+++ ++..++++ +.|+.|++||+++++.+..+.. ..+...+.+++|
T Consensus 94 dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 169 (366)
T 3k26_A 94 RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSV----SKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY 169 (366)
T ss_dssp TCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEE----ETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEE
T ss_pred CCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEE----eCCCeEEEEEeecCeEEEEecccccccCceeEEEE
Confidence 99999999999999999888888888999998 77766665 8999999999999988777632 345668999999
Q ss_pred eCCCCceEEEEecCCCeEEEEEccCCCccceeec---------------------------cCcccCeEEEEEcCCCCEE
Q psy6859 145 LGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD---------------------------RLHTKPVVLIKFNPIYQVV 197 (261)
Q Consensus 145 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~---------------------------~~~~~~v~~~~~~~~~~~l 197 (261)
+|++.. +++++.|+.|++||++ +++.+..+. ..|...|.+++|+ +++|
T Consensus 170 ~~~~~~--l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l 244 (366)
T 3k26_A 170 DLLGEK--IMSCGMDHSLKLWRIN-SKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLI 244 (366)
T ss_dssp CTTSSE--EEEEETTSCEEEEESC-SHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEE
T ss_pred CCCCCE--EEEecCCCCEEEEECC-CCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEE
Confidence 999875 8888999999999998 665554443 0288999999998 7799
Q ss_pred EEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCC--CceEEEeecCC
Q psy6859 198 VSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPD--GNKFVTISMDR 261 (261)
Q Consensus 198 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~s~~~Dg 261 (261)
++++.|+.|++||+.+....... ..........+..+..|...|++++|+|+ +++|++++.||
T Consensus 245 ~~~~~d~~i~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg 309 (366)
T 3k26_A 245 LSKSCENAIVCWKPGKMEDDIDK-IKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVG 309 (366)
T ss_dssp EEECSSSEEEEEEESSTTCCGGG-CCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTS
T ss_pred EEEecCCEEEEEeCCCccccccc-cccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCC
Confidence 99999999999998654221110 00001112446777889999999999999 99999999886
No 71
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-37 Score=248.80 Aligned_cols=220 Identities=10% Similarity=0.039 Sum_probs=168.4
Q ss_pred EEEecCCCeEEEEeccCCcee--eeEEeeccccceeEEEEeeC------CCEEEEEeCCCcEEEEEcccccee-------
Q psy6859 17 VITASNDGHIKFWKKQEEGIE--FVKHFRSHLGVIHSICTNYN------GTLLCTVASDKAMKVFDVINFDMI------- 81 (261)
Q Consensus 17 l~s~~~d~~i~iw~~~~~~~~--~~~~~~~~~~~v~~~~~~~~------~~~l~s~~~dg~v~~wd~~~~~~~------- 81 (261)
+++++.|++|+||++.++... ....+.+|.+.|.+++|+|+ +.+|++++.||+|++||+.+++..
T Consensus 176 laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~ 255 (524)
T 2j04_B 176 FDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMC 255 (524)
T ss_dssp ------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECC
T ss_pred hccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceee
Confidence 344668899999999875322 23456778899999999996 579999999999999999766421
Q ss_pred ----eeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCc-eeeEEeecCCcceEEEE--EEeCCCCceEEE
Q psy6859 82 ----NMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGND-MINMIKLDFTPLTVECI--HYLGDAIPTAAV 154 (261)
Q Consensus 82 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 154 (261)
..+..+..++..+.++++ ..++ +|+.||+|++||++++. +...+.. +...|.++ .|+|++.. +++
T Consensus 256 ~~p~~~l~~h~~~v~sv~~s~~-~~la----sgs~DgtV~lWD~~~~~~~~~~~~~--H~~~V~sv~~~~s~~g~~-~la 327 (524)
T 2j04_B 256 EKPSLTLSLADSLITTFDFLSP-TTVV----CGFKNGFVAEFDLTDPEVPSFYDQV--HDSYILSVSTAYSDFEDT-VVS 327 (524)
T ss_dssp CSCSEEECCTTTCEEEEEESSS-SEEE----EEETTSEEEEEETTBCSSCSEEEEC--SSSCEEEEEEECCTTSCC-EEE
T ss_pred cCceEEEEcCCCCEEEEEecCC-CeEE----EEeCCCEEEEEECCCCCCceEEeec--ccccEEEEEEEcCCCCCe-EEE
Confidence 234445566777777654 3444 45899999999999763 3444554 45578888 56777621 389
Q ss_pred EecCCCeEEEEEccCCCccceeeccCccc--CeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccce
Q psy6859 155 SDQDSSHVHIYDCKGNGTPLHVLDRLHTK--PVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDL 232 (261)
Q Consensus 155 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 232 (261)
+++.|++|++||++ +++++..+. +|.. .|.+++|+|+++.|++++.|++|++||+++ +.++
T Consensus 328 S~S~D~tvklWD~~-~~~~~~~~~-~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~---------------~~~~ 390 (524)
T 2j04_B 328 TVAVDGYFYIFNPK-DIATTKTTV-SRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRA---------------AFAV 390 (524)
T ss_dssp EEETTSEEEEECGG-GHHHHCEEE-EECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTC---------------TTCC
T ss_pred EeccCCeEEEEECC-CCCcccccc-cccccCcccceEeCCCcCeEEEeCCCCcEEEEECcc---------------cccc
Confidence 99999999999999 777777775 5543 588999999999999999999999999953 5666
Q ss_pred eecCCCccceeeeeECCCCceEEEeecCC
Q psy6859 233 FEFAKNKTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 233 ~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
..+.+|...|++++|+|+|++|++|+.||
T Consensus 391 ~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dg 419 (524)
T 2j04_B 391 HPLVSRETTITAIGVSRLHPMVLAGSADG 419 (524)
T ss_dssp EEEEECSSCEEEEECCSSCCBCEEEETTT
T ss_pred eeeecCCCceEEEEeCCCCCeEEEEECCC
Confidence 77888999999999999999999999996
No 72
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-37 Score=241.98 Aligned_cols=251 Identities=12% Similarity=0.107 Sum_probs=197.7
Q ss_pred CCCCCeEEEEEcC--CCeEEEecCCCeEEEEeccCCc------e-eeeEEeeccccceeEEEEeeC-CCEEEEEeCCCcE
Q psy6859 1 MHRSPITHVVVTK--TDFVITASNDGHIKFWKKQEEG------I-EFVKHFRSHLGVIHSICTNYN-GTLLCTVASDKAM 70 (261)
Q Consensus 1 gH~~~v~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~------~-~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~v 70 (261)
+|...|++++|+| +++|++++.|+.|++||+.+.. . .....+..|...|.+++|+|+ +.+|++++.|+.|
T Consensus 111 ~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v 190 (416)
T 2pm9_A 111 NHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFA 190 (416)
T ss_dssp CSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCE
T ss_pred CCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCE
Confidence 6899999999998 5799999999999999998753 1 122334679999999999998 7899999999999
Q ss_pred EEEEccccceeeeeecc------CcceeEEEEeecCC-ceeeeeeecCCCC---eEEEEEcCCC-ceeeEEeecCCcceE
Q psy6859 71 KVFDVINFDMINMIKLD------FTPLTVECIHYLGD-AIPTAAVSDQDSS---RVHIYDCKGN-DMINMIKLDFTPLTV 139 (261)
Q Consensus 71 ~~wd~~~~~~~~~~~~~------~~~~~~~~~~~~~~-~~~~~~~s~~~d~---~i~i~d~~~~-~~~~~~~~~~~~~~~ 139 (261)
++||+.+++.+..+..+ ..++..+.+++++. .+++. +.|+ .|++||++++ .++..+. ..+...+
T Consensus 191 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~----~~d~~~~~i~~~d~~~~~~~~~~~~-~~~~~~v 265 (416)
T 2pm9_A 191 SIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATA----TGSDNDPSILIWDLRNANTPLQTLN-QGHQKGI 265 (416)
T ss_dssp EEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEE----ECCSSSCCCCEEETTSTTSCSBCCC-SCCSSCE
T ss_pred EEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEE----ECCCCCceEEEEeCCCCCCCcEEee-cCccCce
Confidence 99999999988888765 56778888888875 44444 6777 9999999986 4555544 0245689
Q ss_pred EEEEEeC-CCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCC-CEEEEEcCCCeEEEeeccccccc
Q psy6859 140 ECIHYLG-DAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIY-QVVVSVDKAGILEYWSGYKQEFK 217 (261)
Q Consensus 140 ~~~~~~~-~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~ 217 (261)
.+++|+| ++.. +++++.|+.|++||++ +++++..+. .|...|.+++|+|++ ++|++++.|+.|++||+.+....
T Consensus 266 ~~~~~s~~~~~~--l~s~~~dg~v~~wd~~-~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~ 341 (416)
T 2pm9_A 266 LSLDWCHQDEHL--LLSSGRDNTVLLWNPE-SAEQLSQFP-ARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNT 341 (416)
T ss_dssp EEEEECSSCSSC--EEEEESSSEEEEECSS-SCCEEEEEE-CSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCS
T ss_pred eEEEeCCCCCCe--EEEEeCCCCEEEeeCC-CCccceeec-CCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCC
Confidence 9999999 7765 8889999999999999 889999998 899999999999999 79999999999999999765322
Q ss_pred CCeee-----------eee----------cccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859 218 FPKCV-----------HFE----------SKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 218 ~~~~~-----------~~~----------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
..... .+. ...... .....|..++.+++|+|+|++|++++.||
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~dg~~la~~~~d~ 405 (416)
T 2pm9_A 342 LDEQETETKQQESETDFWNNVSREESKEKPSVFHL-QAPTWYGEPSPAAHWAFGGKLVQITPDGK 405 (416)
T ss_dssp SCC----------------------CCSCCCSSCC-CCCSTTCCCSCCCEEETTTEEECBCTTSS
T ss_pred cccccccccccCCcccccccccccccccccccccc-cCCccccCCccceEEeeCCeEEEEeCCCC
Confidence 11100 000 000011 12223678888999999999999999886
No 73
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.2e-35 Score=236.29 Aligned_cols=230 Identities=15% Similarity=0.185 Sum_probs=193.7
Q ss_pred CCCCCe-EEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859 1 MHRSPI-THVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD 79 (261)
Q Consensus 1 gH~~~v-~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~ 79 (261)
||.+.| .++.++ +++|++|+.||+|++||+.+. +.+..+.+|.+.|.+++|+|++ ++++++.||+|++||+.+++
T Consensus 119 ~h~~~v~~~~~~~-~~~l~sgs~dg~i~vwd~~~~--~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~ 194 (464)
T 3v7d_B 119 GHMTSVITCLQFE-DNYVITGADDKMIRVYDSINK--KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGC 194 (464)
T ss_dssp CCSSSCEEEEEEE-TTEEEEEETTSCEEEEETTTT--EEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTE
T ss_pred CCCCCcEEEEEEC-CCEEEEEcCCCcEEEEECCCC--cEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCc
Confidence 688775 666664 679999999999999999987 8889999999999999999988 99999999999999999999
Q ss_pred eeeeeeccCcceeEEEEee--cCCceeeeeeecCCCCeEEEEEcCCCceeeE---------------------EeecCCc
Q psy6859 80 MINMIKLDFTPLTVECIHY--LGDAIPTAAVSDQDSSRVHIYDCKGNDMINM---------------------IKLDFTP 136 (261)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~---------------------~~~~~~~ 136 (261)
.+..+..+..++..+.+.+ ++..++++ +.|+.|++||+++...... .....+.
T Consensus 195 ~~~~~~~h~~~v~~l~~~~~~~~~~l~s~----s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (464)
T 3v7d_B 195 CTHVFEGHNSTVRCLDIVEYKNIKYIVTG----SRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM 270 (464)
T ss_dssp EEEEECCCSSCEEEEEEEESSSCEEEEEE----ETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCS
T ss_pred EEEEECCCCCccEEEEEecCCCCCEEEEE----cCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCcc
Confidence 9998888888888888875 34445544 8999999999997754321 1222344
Q ss_pred ceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccc
Q psy6859 137 LTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEF 216 (261)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 216 (261)
..+.++.. ++.. +++++.|+.|++||++ +++++..+. +|...|.+++|+|++++|++++.||.|++||++
T Consensus 271 ~~v~~~~~--~~~~--l~~~~~d~~i~vwd~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~---- 340 (464)
T 3v7d_B 271 ASVRTVSG--HGNI--VVSGSYDNTLIVWDVA-QMKCLYILS-GHTDRIYSTIYDHERKRCISASMDTTIRIWDLE---- 340 (464)
T ss_dssp SCEEEEEE--ETTE--EEEEETTSCEEEEETT-TTEEEEEEC-CCSSCEEEEEEETTTTEEEEEETTSCEEEEETT----
T ss_pred ceEEEEcC--CCCE--EEEEeCCCeEEEEECC-CCcEEEEec-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC----
Confidence 56666654 4443 8899999999999999 889999997 899999999999999999999999999999994
Q ss_pred cCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859 217 KFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
+++++..+.+|...|.+++|+ +++|++++.||
T Consensus 341 -----------~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg 372 (464)
T 3v7d_B 341 -----------NGELMYTLQGHTALVGLLRLS--DKFLVSAAADG 372 (464)
T ss_dssp -----------TTEEEEEECCCSSCEEEEEEC--SSEEEEEETTS
T ss_pred -----------CCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCC
Confidence 467888899999999999997 57999999986
No 74
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.7e-37 Score=236.91 Aligned_cols=201 Identities=10% Similarity=0.015 Sum_probs=161.5
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCc-eeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccc
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEG-IEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINF 78 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~ 78 (261)
+|...|++++|+| +++|++++.|++|++||+.+.. ......+.+|...|.+++|+|++++|++++.|+.|++||+.++
T Consensus 53 ~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 132 (377)
T 3dwl_C 53 DHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQE 132 (377)
T ss_dssp CCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC---
T ss_pred cCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCc
Confidence 6999999999999 8999999999999999998863 3366777889999999999999999999999999999999887
Q ss_pred c---eeeeeec-cCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCC------------------ceeeEEeecCCc
Q psy6859 79 D---MINMIKL-DFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGN------------------DMINMIKLDFTP 136 (261)
Q Consensus 79 ~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~------------------~~~~~~~~~~~~ 136 (261)
+ ....+.. +...+..+.+++++..++++ +.|+.|++||++.. +++..+ .+.
T Consensus 133 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~----~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 205 (377)
T 3dwl_C 133 NDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG----CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY---PSG 205 (377)
T ss_dssp --CCCCEEECSSCCSCEEEEEECTTSSEEEEE----ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC---CCS
T ss_pred ccceeeeEeecccCCCeEEEEEcCCCCEEEEE----eCCCEEEEEEEEecccCCCccccccccccchhhhhhcc---cCC
Confidence 6 3566665 66778888898888877766 89999999998632 233333 456
Q ss_pred ceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCcc----ceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecc
Q psy6859 137 LTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTP----LHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGY 212 (261)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 212 (261)
..+.+++|+|++.+ +++++.|+.|++||++ +++. +..+. .|..+|.+++|+|++++|++++.++.+ +|+..
T Consensus 206 ~~v~~~~~sp~~~~--l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 206 GWVHAVGFSPSGNA--LAYAGHDSSVTIAYPS-APEQPPRALITVK-LSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp SSEEEEEECTTSSC--EEEEETTTEEC-CEEC-STTSCEEECCCEE-CSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred ceEEEEEECCCCCE--EEEEeCCCcEEEEECC-CCCCcceeeEeec-CCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 67999999999986 8899999999999999 7766 77787 899999999999999999999877755 77665
Q ss_pred c
Q psy6859 213 K 213 (261)
Q Consensus 213 ~ 213 (261)
.
T Consensus 281 ~ 281 (377)
T 3dwl_C 281 E 281 (377)
T ss_dssp C
T ss_pred C
Confidence 3
No 75
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=3.6e-37 Score=239.94 Aligned_cols=225 Identities=9% Similarity=0.074 Sum_probs=161.7
Q ss_pred CCeEEEecCCCeEEEEeccCCcee---eeEEeeccccceeEEEEee--------CCCEEEEEeCCCcEEEEEccccceee
Q psy6859 14 TDFVITASNDGHIKFWKKQEEGIE---FVKHFRSHLGVIHSICTNY--------NGTLLCTVASDKAMKVFDVINFDMIN 82 (261)
Q Consensus 14 ~~~l~s~~~d~~i~iw~~~~~~~~---~~~~~~~~~~~v~~~~~~~--------~~~~l~s~~~dg~v~~wd~~~~~~~~ 82 (261)
+.+|++|+.|++|+|||...+... .+..+.+|.+.|++++|+| |+++|++++.|++|+|||+.++..+.
T Consensus 101 ~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~ 180 (393)
T 4gq1_A 101 SLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPIL 180 (393)
T ss_dssp EEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEE
T ss_pred CCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceee
Confidence 557999999999999999876322 2345688999999999998 78999999999999999999888777
Q ss_pred eeeccCcceeEEEEeecCC-ceeeeeeecCCCCeEEEEEcCCCceeeEEee-----------------------cCCcce
Q psy6859 83 MIKLDFTPLTVECIHYLGD-AIPTAAVSDQDSSRVHIYDCKGNDMINMIKL-----------------------DFTPLT 138 (261)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~-----------------------~~~~~~ 138 (261)
.+..+..++..+.++|++. .+++ ++.|++|++||+++++....... ..+...
T Consensus 181 ~~~~~~~~v~~v~~~p~~~~~l~~----~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 256 (393)
T 4gq1_A 181 AGYPLSSPGISVQFRPSNPNQLIV----GERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASS 256 (393)
T ss_dssp EEEECSSCEEEEEEETTEEEEEEE----EETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSS
T ss_pred eecCCCCCcEEEEECCCCCceEEe----cCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccccc
Confidence 7776777788888888764 3444 48999999999998764333211 122345
Q ss_pred EEEEEEe-CCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEE------------------cC--CCCEE
Q psy6859 139 VECIHYL-GDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKF------------------NP--IYQVV 197 (261)
Q Consensus 139 ~~~~~~~-~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~------------------~~--~~~~l 197 (261)
+.++.|. +++.. +++++.|+++++||+. .++....+. .|...+..+.+ +| ++.++
T Consensus 257 v~~v~~~~~dg~~--l~s~s~d~~i~vwd~~-~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (393)
T 4gq1_A 257 LANVRWIGSDGSG--ILAMCKSGAWLRWNLF-ANNDYNEIS-DSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFA 332 (393)
T ss_dssp CSEEEEETTTTCE--EEEECTTSEEEEEEC---------------------CCSCSEEEECSSCCSSCCEECSSCTTEEE
T ss_pred ceeeeeecCCCCE--EEEEeCCCCEEEEECc-cCCCCceEe-eecCccccEEEccccccccccCcceeEEEccCCCCEEE
Confidence 6678876 67765 8899999999999998 666655554 44444443333 32 33467
Q ss_pred EEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859 198 VSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 198 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
++|+.||.|++||+.+ ++.+..+.+|..+|++++|+|||++||++++||
T Consensus 333 ~sgs~Dg~V~lwd~~~---------------~~~~~~~~~~~~~V~svafspdG~~LA~as~~G 381 (393)
T 4gq1_A 333 TAHSQHGLIQLINTYE---------------KDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS 381 (393)
T ss_dssp EEETTTTEEEEEETTC---------------TTCCEEEEECSSCEEEEEECTTSSEEEEEESSE
T ss_pred EEECCCCEEEEEECCC---------------CcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 8899999999999954 566667777889999999999999999999885
No 76
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.3e-35 Score=250.86 Aligned_cols=234 Identities=14% Similarity=0.182 Sum_probs=204.2
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccc-
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINF- 78 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~- 78 (261)
+|..+|++++|+| +++|++|+.||.|++|++.++ +.+..+.+|.+.|.+++|+|++++|++++.||.|++||+.++
T Consensus 53 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~ 130 (814)
T 3mkq_A 53 VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG--EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW 130 (814)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC--CEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS
T ss_pred cCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC--cEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc
Confidence 6899999999999 999999999999999999987 778888999999999999999999999999999999999887
Q ss_pred ceeeeeeccCcceeEEEEee-cCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeC--CCCceEEEE
Q psy6859 79 DMINMIKLDFTPLTVECIHY-LGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLG--DAIPTAAVS 155 (261)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 155 (261)
.....+..+..++..+.+++ ++..++++ +.|+.|++||++++.....+..+ +...+.+++|+| ++.. +++
T Consensus 131 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~----~~dg~v~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~--l~~ 203 (814)
T 3mkq_A 131 ALEQTFEGHEHFVMCVAFNPKDPSTFASG----CLDRTVKVWSLGQSTPNFTLTTG-QERGVNYVDYYPLPDKPY--MIT 203 (814)
T ss_dssp EEEEEEECCSSCEEEEEEETTEEEEEEEE----ETTSEEEEEETTCSSCSEEEECC-CTTCCCEEEECCSTTCCE--EEE
T ss_pred eEEEEEcCCCCcEEEEEEEcCCCCEEEEE----eCCCeEEEEECCCCcceeEEecC-CCCCEEEEEEEECCCCCE--EEE
Confidence 66667777777788888888 66666655 89999999999988777776654 335788899998 7764 889
Q ss_pred ecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeec
Q psy6859 156 DQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEF 235 (261)
Q Consensus 156 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (261)
++.|+.|++||++ +++++..+. .|...|.+++|+|++++|++++.||.|++||+. +++.+..+
T Consensus 204 ~~~dg~i~~~d~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~---------------~~~~~~~~ 266 (814)
T 3mkq_A 204 ASDDLTIKIWDYQ-TKSCVATLE-GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS---------------TYKVEKTL 266 (814)
T ss_dssp ECTTSEEEEEETT-TTEEEEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEETT---------------TCSEEEEE
T ss_pred EeCCCEEEEEECC-CCcEEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC---------------CCcEEEEe
Confidence 9999999999998 888888887 899999999999999999999999999999984 36777888
Q ss_pred CCCccceeeeeECCCCc--eEEEeecC
Q psy6859 236 AKNKTYPSGLSFSPDGN--KFVTISMD 260 (261)
Q Consensus 236 ~~~~~~v~~~~~s~~~~--~l~s~~~D 260 (261)
..|...+.+++|+|+++ ++++++.+
T Consensus 267 ~~~~~~v~~~~~~~~~~~~~~~~~~~~ 293 (814)
T 3mkq_A 267 NVGLERSWCIATHPTGRKNYIASGFDN 293 (814)
T ss_dssp CCSSSSEEEEEECTTCGGGEEEEEETT
T ss_pred ecCCCcEEEEEEccCCCceEEEEEeCC
Confidence 88999999999999987 46666544
No 77
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.7e-34 Score=218.66 Aligned_cols=235 Identities=14% Similarity=0.199 Sum_probs=194.8
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD 79 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~ 79 (261)
+|...|++++|+| +++|++|+.||+|++|+++++ +.+..+.+|...+.++. ++++.+++++.++.+++|+.....
T Consensus 65 ~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~--~~~~~~~~h~~~~~~~~--~~~~~l~s~~~~~~~~~~~~~~~~ 140 (318)
T 4ggc_A 65 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ--KRLRNMTSHSARVGSLS--WNSYILSSGSRSGHIHHHDVRVAE 140 (318)
T ss_dssp STTCCEEEEEECTTSSEEEEEETTSEEEEEETTTT--EEEEEEECCSSCEEEEE--EETTEEEEEETTSEEEEEETTSSS
T ss_pred CCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCc--eeEEEecCccceEEEee--cCCCEEEEEecCCceEeeecCCCc
Confidence 5788999999999 999999999999999999988 88889999988877655 456799999999999999987654
Q ss_pred -eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceee--EEeecCCcceEEEEEEeCCCCceE-EEE
Q psy6859 80 -MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMIN--MIKLDFTPLTVECIHYLGDAIPTA-AVS 155 (261)
Q Consensus 80 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 155 (261)
.+..+..+........+.+.+..+++. +.|+.|++||+++++... ......+...+.++.+.|+....+ +++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~----~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 216 (318)
T 4ggc_A 141 HHVATLSGHSQEVCGLRWAPDGRHLASG----GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG 216 (318)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEE----ETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE
T ss_pred eeEEEEcCccCceEEEEEcCCCCEEEEE----ecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe
Confidence 555666677777788888888877666 899999999998765332 222333455788999998877643 356
Q ss_pred ecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEE--cCCCeEEEeecccccccCCeeeeeeccccccee
Q psy6859 156 DQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSV--DKAGILEYWSGYKQEFKFPKCVHFESKLDTDLF 233 (261)
Q Consensus 156 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 233 (261)
++.++.|++||.+ ........ .+...+..+.|+|+++.++++ +.|+.|++||++ +++++.
T Consensus 217 ~~~~~~i~lwd~~-~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~---------------~~~~~~ 278 (318)
T 4ggc_A 217 GTSDRHIRIWNVC-SGACLSAV--DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYP---------------TMAKVA 278 (318)
T ss_dssp CTTTCEEEEEETT-TCCEEEEE--ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETT---------------TCCEEE
T ss_pred cCCCCEEEEEecc-cccccccc--cceeeeeeeeecccccceEEEEEcCCCEEEEEECC---------------CCcEEE
Confidence 7889999999998 66666665 578889999999999977654 489999999994 478889
Q ss_pred ecCCCccceeeeeECCCCceEEEeecCC
Q psy6859 234 EFAKNKTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 234 ~~~~~~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
.+.+|.+.|++++|+|+|++|++||.||
T Consensus 279 ~l~gH~~~V~~l~~spdg~~l~S~s~D~ 306 (318)
T 4ggc_A 279 ELKGHTSRVLSLTMSPDGATVASAAADE 306 (318)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTT
T ss_pred EEcCCCCCEEEEEEcCCCCEEEEEecCC
Confidence 9999999999999999999999999997
No 78
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=8.7e-35 Score=231.32 Aligned_cols=230 Identities=15% Similarity=0.221 Sum_probs=191.2
Q ss_pred CCCCCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEee--CCCEEEEEeCCCcEEEEEcccc
Q psy6859 1 MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNY--NGTLLCTVASDKAMKVFDVINF 78 (261)
Q Consensus 1 gH~~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~v~~wd~~~~ 78 (261)
||.+.|++++|+|+.++++|+.||+|++||+.++ +....+.+|.+.|.+++|++ +++++++++.|+.|++||+.++
T Consensus 160 ~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~ 237 (464)
T 3v7d_B 160 GHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKG--CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE 237 (464)
T ss_dssp CCSSCEEEEEECSTTEEEEEETTSCEEEEETTTT--EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCC
T ss_pred CCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCC--cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCC
Confidence 6999999999999559999999999999999987 78889999999999999984 7789999999999999999876
Q ss_pred ceeeee---------------------eccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcc
Q psy6859 79 DMINMI---------------------KLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPL 137 (261)
Q Consensus 79 ~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 137 (261)
+..... ....+...+..+.++++.++++ +.|+.|++||+++++.+..+.. +..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~----~~d~~i~vwd~~~~~~~~~~~~--~~~ 311 (464)
T 3v7d_B 238 SSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSG----SYDNTLIVWDVAQMKCLYILSG--HTD 311 (464)
T ss_dssp CCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEE----ETTSCEEEEETTTTEEEEEECC--CSS
T ss_pred cccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEE----eCCCeEEEEECCCCcEEEEecC--CCC
Confidence 533211 1122333455567777777666 8999999999999988887765 456
Q ss_pred eEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccccccc
Q psy6859 138 TVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFK 217 (261)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 217 (261)
.+.++.|+|++.. +++++.|+.|++||++ +++++..+. +|...|.+++|+ +++|++++.||.|++||+.+
T Consensus 312 ~v~~~~~~~~~~~--l~sg~~dg~i~vwd~~-~~~~~~~~~-~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~---- 381 (464)
T 3v7d_B 312 RIYSTIYDHERKR--CISASMDTTIRIWDLE-NGELMYTLQ-GHTALVGLLRLS--DKFLVSAAADGSIRGWDAND---- 381 (464)
T ss_dssp CEEEEEEETTTTE--EEEEETTSCEEEEETT-TTEEEEEEC-CCSSCEEEEEEC--SSEEEEEETTSEEEEEETTT----
T ss_pred CEEEEEEcCCCCE--EEEEeCCCcEEEEECC-CCcEEEEEe-CCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCC----
Confidence 7999999999876 8899999999999999 899999998 999999999997 57999999999999999954
Q ss_pred CCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859 218 FPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
....... .+...+..++|+|++++|++++ ||
T Consensus 382 -----------~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg 412 (464)
T 3v7d_B 382 -----------YSRKFSY-HHTNLSAITTFYVSDNILVSGS-EN 412 (464)
T ss_dssp -----------CCEEEEE-ECTTCCCEEEEEECSSEEEEEE-TT
T ss_pred -----------Cceeeee-cCCCCccEEEEEeCCCEEEEec-CC
Confidence 2333322 2566788899999999999998 54
No 79
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5.6e-35 Score=256.80 Aligned_cols=251 Identities=14% Similarity=0.159 Sum_probs=213.5
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEee--CCCEEEEEeCCCcEEEEEccc
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNY--NGTLLCTVASDKAMKVFDVIN 77 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~v~~wd~~~ 77 (261)
+|.+.|++++|+| +++|++++.|+.|++||+.++ +.+..+.+|...|.+++|+| ++.++++++.|+.|++||+.+
T Consensus 655 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~ 732 (1249)
T 3sfz_A 655 AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG--KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ 732 (1249)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTS
T ss_pred cCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC--ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCC
Confidence 6999999999999 899999999999999999987 78889999999999999999 566899999999999999999
Q ss_pred cceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEee-------------------------
Q psy6859 78 FDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKL------------------------- 132 (261)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~------------------------- 132 (261)
++.+..+..+..++..+.+++++..++++ +.|+.|++||+++++....+..
T Consensus 733 ~~~~~~~~~h~~~v~~~~~sp~~~~l~s~----s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 808 (1249)
T 3sfz_A 733 KECRNTMFGHTNSVNHCRFSPDDELLASC----SADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSA 808 (1249)
T ss_dssp SSEEEEECCCSSCEEEEEECSSTTEEEEE----ESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCT
T ss_pred cchhheecCCCCCEEEEEEecCCCEEEEE----ECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECC
Confidence 99999888888889999999999877776 8999999999987755443321
Q ss_pred ----------------------------cCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccC
Q psy6859 133 ----------------------------DFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKP 184 (261)
Q Consensus 133 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 184 (261)
..+...+.+++|+|++.. +++++.++.|++||+. ++..+..+. +|...
T Consensus 809 dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~--l~~~~~dg~v~vwd~~-~~~~~~~~~-~h~~~ 884 (1249)
T 3sfz_A 809 DGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHL--AVIALSQYCVELWNID-SRLKVADCR-GHLSW 884 (1249)
T ss_dssp TSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTE--EEEECSSSCEEEEETT-TTEEEEEEC-CCSSC
T ss_pred CCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCE--EEEEeCCCeEEEEEcC-CCceeeecC-CCccc
Confidence 023446778899999875 8888999999999999 888888897 99999
Q ss_pred eEEEEEcCCCCEEEEEcCCCeEEEeecccccccC----------------------------------------------
Q psy6859 185 VVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKF---------------------------------------------- 218 (261)
Q Consensus 185 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---------------------------------------------- 218 (261)
|++++|+|++++|++++.||.|++||+.+.....
T Consensus 885 v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 964 (1249)
T 3sfz_A 885 VHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQV 964 (1249)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCE
T ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcE
Confidence 9999999999999999999999999975421000
Q ss_pred ------------------CeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859 219 ------------------PKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 219 ------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
.....++..+++.+..+.+|...|++++|+|+|++|++++.||
T Consensus 965 ~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg 1025 (1249)
T 3sfz_A 965 SCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDS 1025 (1249)
T ss_dssp EEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSS
T ss_pred EEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCC
Confidence 0112244455667777888999999999999999999999886
No 80
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.9e-35 Score=232.83 Aligned_cols=249 Identities=12% Similarity=0.127 Sum_probs=184.1
Q ss_pred CCeEEEEEcC-C--CeEEEecCCCeEEEEeccCCcee-------------------------------------eeEE-e
Q psy6859 4 SPITHVVVTK-T--DFVITASNDGHIKFWKKQEEGIE-------------------------------------FVKH-F 42 (261)
Q Consensus 4 ~~v~~~~~~~-~--~~l~s~~~d~~i~iw~~~~~~~~-------------------------------------~~~~-~ 42 (261)
+.|++++|+| + .+|++++.|++|++|++.+.... +... .
T Consensus 94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
T 3dw8_B 94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA 173 (447)
T ss_dssp CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred CceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence 8899999999 6 78999999999999998763211 1112 3
Q ss_pred eccccceeEEEEeeCCCEEEEEeCCCcEEEEEccc-cceeee-------eeccCcceeEEEEeecC-CceeeeeeecCCC
Q psy6859 43 RSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVIN-FDMINM-------IKLDFTPLTVECIHYLG-DAIPTAAVSDQDS 113 (261)
Q Consensus 43 ~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~-~~~~~~-------~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~d 113 (261)
.+|...|.+++|+|++++|+++ .|+.|++||+.+ ++.+.. +..+...+..+.+++++ ..++++ +.|
T Consensus 174 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~----~~d 248 (447)
T 3dw8_B 174 NAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYS----SSK 248 (447)
T ss_dssp SCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEE----ETT
T ss_pred cCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEE----eCC
Confidence 6799999999999999999998 799999999984 444442 33455668888888887 666665 899
Q ss_pred CeEEEEEcCCCce----eeEEeecCCc----------ceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeecc
Q psy6859 114 SRVHIYDCKGNDM----INMIKLDFTP----------LTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDR 179 (261)
Q Consensus 114 ~~i~i~d~~~~~~----~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~ 179 (261)
+.|++||+++++. +..+..+..+ ..+.+++|+|++.+ +++++. +.|++||++..++++..+.
T Consensus 249 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~--l~~~~~-~~v~iwd~~~~~~~~~~~~- 324 (447)
T 3dw8_B 249 GTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRY--MMTRDY-LSVKVWDLNMENRPVETYQ- 324 (447)
T ss_dssp SCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSE--EEEEES-SEEEEEETTCCSSCSCCEE-
T ss_pred CeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCE--EEEeeC-CeEEEEeCCCCccccceee-
Confidence 9999999998876 5666543221 27999999999976 778887 9999999983388888887
Q ss_pred CcccC---------------eEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeee--------e--------eccc
Q psy6859 180 LHTKP---------------VVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVH--------F--------ESKL 228 (261)
Q Consensus 180 ~~~~~---------------v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------~--------~~~~ 228 (261)
.|... +..++|+|++++|++++.||.|++||+.+++...-.... . ..+.
T Consensus 325 ~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (447)
T 3dw8_B 325 VHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRK 404 (447)
T ss_dssp SCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCC
T ss_pred ccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcc
Confidence 66542 334899999999999999999999999765321100000 0 0000
Q ss_pred -ccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859 229 -DTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 229 -~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
.........+...|..++|+|++++||+++.|+
T Consensus 405 ~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~ 438 (447)
T 3dw8_B 405 KDEISVDSLDFNKKILHTAWHPKENIIAVATTNN 438 (447)
T ss_dssp TTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC
T ss_pred cccccccccccCCceeEEEECCCCCEEEEEecce
Confidence 000001113456789999999999999998874
No 81
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-35 Score=248.72 Aligned_cols=231 Identities=11% Similarity=0.137 Sum_probs=186.4
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD 79 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~ 79 (261)
||.+.|++++|+| +++||+|+.||+|+||+.... +....+ .|..+|.+++|+| +++|++++.|++|++||+.+++
T Consensus 15 gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~--~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~ 90 (902)
T 2oaj_A 15 GMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQV--EVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQK 90 (902)
T ss_dssp ECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTC--EEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCS
T ss_pred CCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCc--EEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCc
Confidence 7999999999999 999999999999999998765 544444 3788999999999 8899999999999999999999
Q ss_pred eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEe----------ecCCcceEEEEEEeCCCC
Q psy6859 80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIK----------LDFTPLTVECIHYLGDAI 149 (261)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~ 149 (261)
.+..+. +...+..+.++++++.++++ +.||.|++||+++++.. .+. ...+...|.+++|+|++.
T Consensus 91 ~~~~~~-~~~~V~~v~~sp~g~~l~sg----s~dg~V~lwd~~~~~~~-~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~ 164 (902)
T 2oaj_A 91 VLTTVF-VPGKITSIDTDASLDWMLIG----LQNGSMIVYDIDRDQLS-SFKLDNLQKSSFFPAARLSPIVSIQWNPRDI 164 (902)
T ss_dssp EEEEEE-CSSCEEEEECCTTCSEEEEE----ETTSCEEEEETTTTEEE-EEEECCHHHHHTCSSSCCCCCCEEEEETTEE
T ss_pred EEEEEc-CCCCEEEEEECCCCCEEEEE----cCCCcEEEEECCCCccc-cceeccccccccccccCCCCeEEEEEccCCC
Confidence 888886 44567888888888877766 89999999999988653 211 233556899999999753
Q ss_pred ceEEEEecCCCeEEEEEccCCCccceeeccCc------------------ccCeEEEEEcCCCCEEEEEcCCCeEEEeec
Q psy6859 150 PTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLH------------------TKPVVLIKFNPIYQVVVSVDKAGILEYWSG 211 (261)
Q Consensus 150 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 211 (261)
. .+++|+.|+.| +||++ +++++..+. .| ...|++++|+|+|++|++++.||.|++||+
T Consensus 165 ~-~l~~g~~dg~v-lWd~~-~~~~~~~~~-~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~ 240 (902)
T 2oaj_A 165 G-TVLISYEYVTL-TYSLV-ENEIKQSFI-YELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDA 240 (902)
T ss_dssp E-EEEEECSSCEE-EEETT-TTEEEEEEC-CCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEET
T ss_pred C-EEEEEeCCCcE-EEECC-CCceEEEEe-cccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence 2 37788899999 99999 888877775 44 477999999999999999999999999999
Q ss_pred ccccccCCeeeeeecccccceee--c---C-------------CCccceeeeeEC----CCC-ceEEEeecC
Q psy6859 212 YKQEFKFPKCVHFESKLDTDLFE--F---A-------------KNKTYPSGLSFS----PDG-NKFVTISMD 260 (261)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~--~---~-------------~~~~~v~~~~~s----~~~-~~l~s~~~D 260 (261)
+++ +++.. + . .|...|++++|+ |++ .+|++|+.|
T Consensus 241 ~~g---------------~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~ 297 (902)
T 2oaj_A 241 NSG---------------HMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSI 297 (902)
T ss_dssp TTC---------------CEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECS
T ss_pred CCC---------------cEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCC
Confidence 653 22211 1 1 245689999995 554 567777665
No 82
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-35 Score=233.68 Aligned_cols=251 Identities=12% Similarity=0.102 Sum_probs=187.5
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEecc---CCceeeeEEeec------------cccceeEEE--EeeCCCEEE
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQ---EEGIEFVKHFRS------------HLGVIHSIC--TNYNGTLLC 62 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~---~~~~~~~~~~~~------------~~~~v~~~~--~~~~~~~l~ 62 (261)
+|..+|++++|+| +++|++|+.||.|++||++ .+ +....+.. +...+.++. +++++++|+
T Consensus 109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 186 (437)
T 3gre_A 109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQE--SEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLV 186 (437)
T ss_dssp ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEET--TEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEE
T ss_pred cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCC--ceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEE
Confidence 4889999999999 8999999999999999995 32 22222221 445566666 457899999
Q ss_pred EEeCCCcEEEEEccccceeeeeec--cCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEE
Q psy6859 63 TVASDKAMKVFDVINFDMINMIKL--DFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVE 140 (261)
Q Consensus 63 s~~~dg~v~~wd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 140 (261)
+++.|+.|++||+.+++.+..+.. +...+..+.+++++..++++ +.|+.|++||+++++.+..+... +...+.
T Consensus 187 ~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~----~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~ 261 (437)
T 3gre_A 187 ALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILG----TTRGIIDIWDIRFNVLIRSWSFG-DHAPIT 261 (437)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEE----ETTSCEEEEETTTTEEEEEEBCT-TCEEEE
T ss_pred EEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEE----cCCCeEEEEEcCCccEEEEEecC-CCCceE
Confidence 999999999999999999998886 56778888888888877766 89999999999999888877643 345889
Q ss_pred EEEEeCCC--CceEEEEecCCCeEEEEEccCCCccceeeccC--------------------------cccCeEEEEEcC
Q psy6859 141 CIHYLGDA--IPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRL--------------------------HTKPVVLIKFNP 192 (261)
Q Consensus 141 ~~~~~~~~--~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~--------------------------~~~~v~~~~~~~ 192 (261)
++.++|.. ...++++++.|+.|++||++ +++.+..+. . |...|++++|+
T Consensus 262 ~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~- 338 (437)
T 3gre_A 262 HVEVCQFYGKNSVIVVGGSSKTFLTIWNFV-KGHCQYAFI-NSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS- 338 (437)
T ss_dssp EEEECTTTCTTEEEEEEESTTEEEEEEETT-TTEEEEEEE-SSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-
T ss_pred EEEeccccCCCccEEEEEcCCCcEEEEEcC-CCcEEEEEE-cCCCCCccceecccccccccceecccccCCceEEEEEC-
Confidence 99776541 12348999999999999998 777665554 2 66678899999
Q ss_pred CCCEEEEEcCCCeEEEeecccccccCCee------ee----------------eecccccceeecCCCccceeeeeECCC
Q psy6859 193 IYQVVVSVDKAGILEYWSGYKQEFKFPKC------VH----------------FESKLDTDLFEFAKNKTYPSGLSFSPD 250 (261)
Q Consensus 193 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~----------------~~~~~~~~~~~~~~~~~~v~~~~~s~~ 250 (261)
++++|++++.|+.|++||+.+++....-. .. ++............|...|++++|+++
T Consensus 339 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~ 418 (437)
T 3gre_A 339 NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEV 418 (437)
T ss_dssp TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEES
T ss_pred CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeecc
Confidence 77899999999999999997653211000 00 001112222334459999999999998
Q ss_pred --CceEEEeecCC
Q psy6859 251 --GNKFVTISMDR 261 (261)
Q Consensus 251 --~~~l~s~~~Dg 261 (261)
+.+|++|+.||
T Consensus 419 ~~~~~l~s~~~dG 431 (437)
T 3gre_A 419 DETPLLVACDNSG 431 (437)
T ss_dssp SSSEEEEEEETTS
T ss_pred CCceEEEEEcCCc
Confidence 88999999987
No 83
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.2e-34 Score=228.73 Aligned_cols=232 Identities=18% Similarity=0.283 Sum_probs=190.4
Q ss_pred CCCCCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccce
Q psy6859 1 MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDM 80 (261)
Q Consensus 1 gH~~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~ 80 (261)
||...|++++| .+++|++|+.||.|++||+.++ +.+..+.+|...|.+++|++ .++++++.||.|++||+.+++.
T Consensus 171 ~h~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~--~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~ 245 (435)
T 1p22_A 171 GHTGSVLCLQY-DERVIITGSSDSTVRVWDVNTG--EMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTD 245 (435)
T ss_dssp CCSSCEEEEEC-CSSEEEEEETTSCEEEEESSSC--CEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSC
T ss_pred CCCCcEEEEEE-CCCEEEEEcCCCeEEEEECCCC--cEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCC
Confidence 69999999999 5679999999999999999987 77888999999999999974 4999999999999999988765
Q ss_pred e---eeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEec
Q psy6859 81 I---NMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ 157 (261)
Q Consensus 81 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (261)
. ..+..+...+.. +..+++.++++ +.|+.|++||+++++.+..+..+ ...+.++.++++. +++|+
T Consensus 246 ~~~~~~~~~~~~~v~~--~~~~~~~l~s~----~~dg~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~----l~~g~ 313 (435)
T 1p22_A 246 ITLRRVLVGHRAAVNV--VDFDDKYIVSA----SGDRTIKVWNTSTCEFVRTLNGH--KRGIACLQYRDRL----VVSGS 313 (435)
T ss_dssp CEEEEEECCCSSCEEE--EEEETTEEEEE----ETTSEEEEEETTTCCEEEEEECC--SSCEEEEEEETTE----EEEEE
T ss_pred ceeeeEecCCCCcEEE--EEeCCCEEEEE----eCCCeEEEEECCcCcEEEEEcCC--CCcEEEEEeCCCE----EEEEe
Confidence 5 334444444444 44467776665 89999999999999988888754 4578888886543 88999
Q ss_pred CCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCC
Q psy6859 158 DSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK 237 (261)
Q Consensus 158 ~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (261)
.|+.|++||++ +++++..+. +|...|.+++| ++++|++++.||.|++||+.++..... .....++..+.+
T Consensus 314 ~dg~i~iwd~~-~~~~~~~~~-~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~------~~~~~~~~~~~~ 383 (435)
T 1p22_A 314 SDNTIRLWDIE-CGACLRVLE-GHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRA------PAGTLCLRTLVE 383 (435)
T ss_dssp TTSCEEEEETT-TCCEEEEEC-CCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTS------CTTTTEEEEECC
T ss_pred CCCeEEEEECC-CCCEEEEEe-CCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccc------cccchheeeccC
Confidence 99999999999 899999998 89999999999 788999999999999999965321000 001126778889
Q ss_pred CccceeeeeECCCCceEEEeecCC
Q psy6859 238 NKTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 238 ~~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
|...|.+++| ++++|++++.||
T Consensus 384 h~~~v~~l~~--~~~~l~s~s~Dg 405 (435)
T 1p22_A 384 HSGRVFRLQF--DEFQIVSSSHDD 405 (435)
T ss_dssp CSSCCCCEEE--CSSCEEECCSSS
T ss_pred CCCCeEEEEe--CCCEEEEEeCCC
Confidence 9999999999 788999999986
No 84
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.9e-34 Score=234.75 Aligned_cols=235 Identities=13% Similarity=0.132 Sum_probs=193.9
Q ss_pred CCCCCeEEEEEcC-CC-eEEEecCCCeEEEEeccCCceeeeEEeecccc---ceeEEEEeeC-CCEEEEEeCCCcEEEEE
Q psy6859 1 MHRSPITHVVVTK-TD-FVITASNDGHIKFWKKQEEGIEFVKHFRSHLG---VIHSICTNYN-GTLLCTVASDKAMKVFD 74 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~l~s~~~dg~v~~wd 74 (261)
+|...|++++|+| ++ .+++++.|+.|++||..+. +....+.+|.. .|.+++|+|+ +++|++++.||.|++||
T Consensus 158 ~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd 235 (615)
T 1pgu_A 158 GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF--KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFD 235 (615)
T ss_dssp SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB--EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEE
T ss_pred cCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc--ceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEE
Confidence 5899999999999 65 8999999999999999877 78888999999 9999999999 99999999999999999
Q ss_pred ccccceeeee-e---ccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEe-------------------
Q psy6859 75 VINFDMINMI-K---LDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIK------------------- 131 (261)
Q Consensus 75 ~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~------------------- 131 (261)
+.+++.+..+ . .+..++..+.+. ++..+++. +.|+.|++||+++++.+..+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~----~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (615)
T 1pgu_A 236 GKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATV----GADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNG 310 (615)
T ss_dssp TTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEE----ETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETT
T ss_pred CCCCCEeEEecccccccCCceEEEEEc-CCCEEEEE----cCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCC
Confidence 9999988887 4 455566666666 55555544 556666666655432211110
Q ss_pred --------------------------------------------------------------------------------
Q psy6859 132 -------------------------------------------------------------------------------- 131 (261)
Q Consensus 132 -------------------------------------------------------------------------------- 131 (261)
T Consensus 311 ~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~ 390 (615)
T 1pgu_A 311 RIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSIS 390 (615)
T ss_dssp EEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEE
T ss_pred eEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEe
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy6859 132 -------------------------------------------------------------------------------- 131 (261)
Q Consensus 132 -------------------------------------------------------------------------------- 131 (261)
T Consensus 391 ~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~ 470 (615)
T 1pgu_A 391 WDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQ 470 (615)
T ss_dssp TTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEE
T ss_pred CCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEE
Confidence
Q ss_pred -------------ecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccC-cccCeEEEEEcC-----
Q psy6859 132 -------------LDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRL-HTKPVVLIKFNP----- 192 (261)
Q Consensus 132 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~v~~~~~~~----- 192 (261)
...+...+.+++|+|++.+ +++++.|+.|++||+. +++++..+. . |...|++++|+|
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~--l~~~~~dg~i~iw~~~-~~~~~~~~~-~~h~~~v~~~~~sp~~~~~ 546 (615)
T 1pgu_A 471 VFKLSDLEVSFDLKTPLRAKPSYISISPSETY--IAAGDVMGKILLYDLQ-SREVKTSRW-AFRTSKINAISWKPAEKGA 546 (615)
T ss_dssp EEETTEEEEEEECSSCCSSCEEEEEECTTSSE--EEEEETTSCEEEEETT-TTEEEECCS-CCCSSCEEEEEECCCC---
T ss_pred EEECCCccccccccCCccCceEEEEECCCCCE--EEEcCCCCeEEEeeCC-CCcceeEee-cCCCCceeEEEEcCccccc
Confidence 1112345778889999875 8888999999999998 888888886 6 999999999999
Q ss_pred -----CCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859 193 -----IYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 193 -----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
++++|++++.||.|++||+.++ .+++..+.+|...|++++|+|+++ |++++.||
T Consensus 547 ~~~~~~~~~l~~~~~dg~i~iw~~~~~--------------~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~ 605 (615)
T 1pgu_A 547 NEEEIEEDLVATGSLDTNIFIYSVKRP--------------MKIIKALNAHKDGVNNLLWETPST-LVSSGADA 605 (615)
T ss_dssp ---CCSCCEEEEEETTSCEEEEESSCT--------------TCCEEETTSSTTCEEEEEEEETTE-EEEEETTS
T ss_pred cccccCCCEEEEEcCCCcEEEEECCCC--------------ceechhhhcCccceEEEEEcCCCC-eEEecCCc
Confidence 9999999999999999999541 267888899999999999999999 99999986
No 85
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.2e-35 Score=228.93 Aligned_cols=204 Identities=11% Similarity=0.137 Sum_probs=175.5
Q ss_pred CCCCCeEEEEEcC--CCeEEEecCCCeEEEEeccCCceeeeEEe-----eccccceeEEEEee-CCCEEEEEeCCCcEEE
Q psy6859 1 MHRSPITHVVVTK--TDFVITASNDGHIKFWKKQEEGIEFVKHF-----RSHLGVIHSICTNY-NGTLLCTVASDKAMKV 72 (261)
Q Consensus 1 gH~~~v~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~~ 72 (261)
||.+.|.++.|+| +..|++|+.|++|++||+.++ +.+..+ .+|...|.+++|++ ++++|++|+.|++|++
T Consensus 155 gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~--~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~ 232 (380)
T 3iz6_a 155 GHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTG--QRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRL 232 (380)
T ss_dssp CCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTC--CEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEE
T ss_pred CCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCC--cEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEE
Confidence 7999999999998 457999999999999999987 555555 67899999999987 8899999999999999
Q ss_pred EEcc-ccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCC-----cceEEEEEEeC
Q psy6859 73 FDVI-NFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFT-----PLTVECIHYLG 146 (261)
Q Consensus 73 wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 146 (261)
||++ .++.+..+..+...+..+.++|++..++++ +.|++|++||+++++.+..+..+.. ...+.+++|+|
T Consensus 233 wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~----s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 308 (380)
T 3iz6_a 233 WDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTG----SDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSI 308 (380)
T ss_dssp EETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEE----CSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECS
T ss_pred EECCCCCcceEEECCcCCCeEEEEEecCCCeEEEE----cCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECC
Confidence 9997 456777787788888999999999887776 9999999999999988877754322 12478999999
Q ss_pred CCCceEEEEecCCCeEEEEEccCCCccceeec---cCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859 147 DAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD---RLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK 213 (261)
Q Consensus 147 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 213 (261)
++.. +++|+.||.|++||+. .++.+..+. .+|...|++++|+|++++|++|+.|+.|++|++..
T Consensus 309 ~g~~--l~~g~~dg~i~vwd~~-~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 309 SGRL--LFAGYSNGDCYVWDTL-LAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp SSSE--EEEECTTSCEEEEETT-TCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred CCCE--EEEEECCCCEEEEECC-CCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 9986 8899999999999998 777766652 27999999999999999999999999999999853
No 86
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=4.9e-34 Score=225.88 Aligned_cols=225 Identities=16% Similarity=0.216 Sum_probs=179.6
Q ss_pred CCCCCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccce
Q psy6859 1 MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDM 80 (261)
Q Consensus 1 gH~~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~ 80 (261)
+|...|.+++|+ ++.+++|+.||.|++||+.+. +.+..+.+|...|.++.| +++++++++.||.|++||+.+++.
T Consensus 197 ~h~~~v~~~~~~-~~~l~s~s~dg~i~~wd~~~~--~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~ 271 (445)
T 2ovr_B 197 GHTSTVRCMHLH-EKRVVSGSRDATLRVWDIETG--QCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETC 271 (445)
T ss_dssp CCSSCEEEEEEE-TTEEEEEETTSEEEEEESSSC--CEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEE
T ss_pred CCCCcEEEEEec-CCEEEEEeCCCEEEEEECCCC--cEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcE
Confidence 577788888776 346778888888888887766 666777778888888887 566888888888888888888887
Q ss_pred eeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCC
Q psy6859 81 INMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS 160 (261)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 160 (261)
+..+..+..++..+.+ ++..++++ +.|+.|++||+++++.+..+..+ ...+.++.++++. +++++.||
T Consensus 272 ~~~~~~~~~~v~~~~~--~~~~l~~~----~~d~~i~i~d~~~~~~~~~~~~~--~~~v~~~~~~~~~----l~~~~~dg 339 (445)
T 2ovr_B 272 LHTLQGHTNRVYSLQF--DGIHVVSG----SLDTSIRVWDVETGNCIHTLTGH--QSLTSGMELKDNI----LVSGNADS 339 (445)
T ss_dssp EEEECCCSSCEEEEEE--CSSEEEEE----ETTSCEEEEETTTCCEEEEECCC--CSCEEEEEEETTE----EEEEETTS
T ss_pred eEEecCCCCceEEEEE--CCCEEEEE----eCCCeEEEEECCCCCEEEEEcCC--cccEEEEEEeCCE----EEEEeCCC
Confidence 7777655555544444 66666555 88999999999999888877653 4467788876553 88999999
Q ss_pred eEEEEEccCCCccceeeccC---cccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeec--
Q psy6859 161 HVHIYDCKGNGTPLHVLDRL---HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEF-- 235 (261)
Q Consensus 161 ~i~i~d~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-- 235 (261)
.|++||++ +++++..+. . |...|++++|+ +++|++++.||.|++||+.+ ++.+..+
T Consensus 340 ~i~vwd~~-~~~~~~~~~-~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~---------------~~~~~~~~~ 400 (445)
T 2ovr_B 340 TVKIWDIK-TGQCLQTLQ-GPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKT---------------GEFIRNLVT 400 (445)
T ss_dssp CEEEEETT-TCCEEEEEC-STTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTT---------------CCEEEEEEE
T ss_pred eEEEEECC-CCcEEEEEc-cCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCC---------------Cceeeeeec
Confidence 99999998 888888886 4 88899999996 57999999999999999954 4555555
Q ss_pred ---CCCccceeeeeECCCCceEEEeecCC
Q psy6859 236 ---AKNKTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 236 ---~~~~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
.+|...|++++|+|++.+|++|+.||
T Consensus 401 ~~~~~~~~~v~~~~~s~~~~~la~~~~dg 429 (445)
T 2ovr_B 401 LESGGSGGVVWRIRASNTKLVCAVGSRNG 429 (445)
T ss_dssp CTTGGGTCEEEEEEECSSEEEEEEECSSS
T ss_pred cccCCCCceEEEEEecCCEEEEEEcccCC
Confidence 46889999999999999999999986
No 87
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=4.4e-34 Score=219.66 Aligned_cols=223 Identities=12% Similarity=0.174 Sum_probs=171.6
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEE-EEEeCCCcEEEEEcccc
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLL-CTVASDKAMKVFDVINF 78 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~v~~wd~~~~ 78 (261)
+|.+.|++++|+| +++|++|+.++ +++|+.+.. +...... ...+..+++.++++.+ ++++.|++|++||+.++
T Consensus 17 ~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~ 91 (355)
T 3vu4_A 17 HVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPV--AHIMSQE--MRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKK 91 (355)
T ss_dssp --CCCCCEEEECTTSSEEEEECSSE-EEEEEETTE--EEEEEEE--CSCCCEEEECTTSSEEEEECSSTTEEEEEETTTT
T ss_pred cCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCc--ceeeeee--cCCeEEEEEcCCCCEEEEEECCccEEEEEECCCC
Confidence 5889999999999 88999888765 789998865 3333332 2357888898888777 56778899999999999
Q ss_pred ceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCC-ceeeEEeecCCcceEEEEEEeCCCCceEEEE-e
Q psy6859 79 DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGN-DMINMIKLDFTPLTVECIHYLGDAIPTAAVS-D 156 (261)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 156 (261)
+.+..+..+. ++..+.+ ..+.++.+ .++.|++||+.+. +.+..+.. + ...+++++ .. ++++ |
T Consensus 92 ~~~~~~~~~~-~v~~v~~--~~~~~~~~-----~~~~i~i~d~~~~~~~~~~~~~---~--~~~~~~s~--~~-la~~sg 155 (355)
T 3vu4_A 92 QDVSRIKVDA-PVKDLFL--SREFIVVS-----YGDVISVFKFGNPWKRITDDIR---F--GGVCEFSN--GL-LVYSNE 155 (355)
T ss_dssp EEEEEEECSS-CEEEEEE--CSSEEEEE-----ETTEEEEEESSTTCCBSSCCEE---E--EEEEEEET--TE-EEEEES
T ss_pred cEEEEEECCC-ceEEEEE--cCCEEEEE-----EcCEEEEEECCCCceeeEEecc---C--CceEEEEc--cE-EEEeCC
Confidence 9988887443 4444444 34444433 5889999999988 66666554 2 23345556 32 3443 7
Q ss_pred cCCCeEEEEEccCCCc---------------c-ceeeccCcccCeEEEEEcCCCCEEEEEcCCCe-EEEeecccccccCC
Q psy6859 157 QDSSHVHIYDCKGNGT---------------P-LHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGI-LEYWSGYKQEFKFP 219 (261)
Q Consensus 157 ~~d~~i~i~d~~~~~~---------------~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~ 219 (261)
+.+|.|++||++ ++. + +..+. +|..+|++++|+|++++|++++.|++ |++||++
T Consensus 156 ~~~g~v~iwd~~-~~~~~~~~~~~~~~~~~~p~~~~~~-~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~------- 226 (355)
T 3vu4_A 156 FNLGQIHITKLQ-SSGSATTQDQGVQQKAILGKGVLIK-AHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTE------- 226 (355)
T ss_dssp SCTTCEEEEECC-C------------------CCEEEC-CCSSCEEEEEECTTSSEEEEEETTCSEEEEEETT-------
T ss_pred CcCcEEEEEECC-CCCccccccccccccccCcccEEEE-ccCCceEEEEECCCCCEEEEEeCCCCEEEEEECC-------
Confidence 899999999998 544 2 67787 99999999999999999999999998 9999995
Q ss_pred eeeeeecccccceeecC-C-CccceeeeeECCCCceEEEeecCC
Q psy6859 220 KCVHFESKLDTDLFEFA-K-NKTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 220 ~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
+++++..+. + |...|++++|+|+|++|++++.||
T Consensus 227 --------~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~ 262 (355)
T 3vu4_A 227 --------DGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKW 262 (355)
T ss_dssp --------TCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTC
T ss_pred --------CCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCC
Confidence 467778887 5 999999999999999999999986
No 88
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.8e-34 Score=224.37 Aligned_cols=225 Identities=12% Similarity=0.202 Sum_probs=183.5
Q ss_pred eEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeec-cccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeee
Q psy6859 6 ITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRS-HLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMI 84 (261)
Q Consensus 6 v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~ 84 (261)
+.+++|++ +.+++++.|+.|++|++.++ +....+.. |...|.+++|+|++++|++++.||.|++||+.+++.+..+
T Consensus 96 ~~~~~~s~-~~l~~~~~d~~v~lw~~~~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 172 (401)
T 4aez_A 96 LNLLDWSN-LNVVAVALERNVYVWNADSG--SVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTM 172 (401)
T ss_dssp CBCEEECT-TSEEEEEETTEEEEEETTTC--CEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred EEEEeecC-CCEEEEECCCeEEEeeCCCC--cEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEe
Confidence 44567765 45778889999999999987 44444444 7899999999999999999999999999999999998888
Q ss_pred eccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCC-CceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEE
Q psy6859 85 KLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKG-NDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVH 163 (261)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 163 (261)
..+...+..+.+ +++.++++ +.|+.|++||++. ...+..+.. +...+.+++|+|++.. +++++.|+.|+
T Consensus 173 ~~~~~~v~~~~~--~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~--l~s~~~d~~v~ 242 (401)
T 4aez_A 173 AGHQARVGCLSW--NRHVLSSG----SRSGAIHHHDVRIANHQIGTLQG--HSSEVCGLAWRSDGLQ--LASGGNDNVVQ 242 (401)
T ss_dssp CCCSSCEEEEEE--ETTEEEEE----ETTSEEEEEETTSSSCEEEEEEC--CSSCEEEEEECTTSSE--EEEEETTSCEE
T ss_pred cCCCCceEEEEE--CCCEEEEE----cCCCCEEEEecccCcceeeEEcC--CCCCeeEEEEcCCCCE--EEEEeCCCeEE
Confidence 876666665555 56666555 8999999999994 455555554 4568999999999875 88999999999
Q ss_pred EEEccCCCccceeeccCcccCeEEEEEcCCCC-EEEEEc--CCCeEEEeecccccccCCeeeeeecccccceeecCCCcc
Q psy6859 164 IYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQ-VVVSVD--KAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT 240 (261)
Q Consensus 164 i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (261)
+||++ +++++..+. .|...|.+++|+|++. ++++++ .|+.|++||+.+ ++++..+. +..
T Consensus 243 iwd~~-~~~~~~~~~-~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~---------------~~~~~~~~-~~~ 304 (401)
T 4aez_A 243 IWDAR-SSIPKFTKT-NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT---------------GARVNTVD-AGS 304 (401)
T ss_dssp EEETT-CSSEEEEEC-CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT---------------CCEEEEEE-CSS
T ss_pred EccCC-CCCccEEec-CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC---------------CCEEEEEe-CCC
Confidence 99999 888888887 8999999999999775 566654 799999999954 55566554 567
Q ss_pred ceeeeeECCCCceEEEee--cCC
Q psy6859 241 YPSGLSFSPDGNKFVTIS--MDR 261 (261)
Q Consensus 241 ~v~~~~~s~~~~~l~s~~--~Dg 261 (261)
.|.+++|+|++++|++++ .||
T Consensus 305 ~v~~~~~s~~~~~l~~~~g~~dg 327 (401)
T 4aez_A 305 QVTSLIWSPHSKEIMSTHGFPDN 327 (401)
T ss_dssp CEEEEEECSSSSEEEEEECTTTC
T ss_pred cEEEEEECCCCCeEEEEeecCCC
Confidence 899999999999999953 664
No 89
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.4e-34 Score=226.12 Aligned_cols=234 Identities=13% Similarity=0.118 Sum_probs=189.0
Q ss_pred eEEEEEcC-C-CeEEEecCCCeEEEEeccCCce--eeeEEeeccccceeEEEEee-CCCEEEEEeCCCcEEEEEcccc--
Q psy6859 6 ITHVVVTK-T-DFVITASNDGHIKFWKKQEEGI--EFVKHFRSHLGVIHSICTNY-NGTLLCTVASDKAMKVFDVINF-- 78 (261)
Q Consensus 6 v~~~~~~~-~-~~l~s~~~d~~i~iw~~~~~~~--~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~~wd~~~~-- 78 (261)
...++++| . .++++++.||.|+||++...+. .....+.+|.+.|++++|+| ++++|++++.||.|++||+.++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 34577887 3 3555689999999999976431 23456788999999999999 9999999999999999999887
Q ss_pred -----ceeeeeeccCcceeEEEEeecC-CceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceE
Q psy6859 79 -----DMINMIKLDFTPLTVECIHYLG-DAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTA 152 (261)
Q Consensus 79 -----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (261)
+.+..+..+...+..+.+++++ ..++++ +.|+.|++||+++++.+..+....+...+.+++|+|++..
T Consensus 117 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~----~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-- 190 (402)
T 2aq5_A 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSA----GCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGAL-- 190 (402)
T ss_dssp SSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEE----ETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSC--
T ss_pred ccccCCceEEecCCCCeEEEEEECcCCCCEEEEE----cCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCE--
Confidence 5567777778888889999887 455554 8999999999999988877742345678999999999976
Q ss_pred EEEecCCCeEEEEEccCCCccceee-ccCcccC-eEEEEEcCCCCEEEEE---cCCCeEEEeecccccccCCeeeeeecc
Q psy6859 153 AVSDQDSSHVHIYDCKGNGTPLHVL-DRLHTKP-VVLIKFNPIYQVVVSV---DKAGILEYWSGYKQEFKFPKCVHFESK 227 (261)
Q Consensus 153 ~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~-v~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~~~~~~~~~~~~ 227 (261)
+++++.|+.|++||++ +++.+..+ . .|... +..+.|+|++++|+++ +.|+.|++||+++.
T Consensus 191 l~~~~~d~~i~iwd~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~------------- 255 (402)
T 2aq5_A 191 ICTSCRDKRVRVIEPR-KGTVVAEKDR-PHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHL------------- 255 (402)
T ss_dssp EEEEETTSEEEEEETT-TTEEEEEEEC-SSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBC-------------
T ss_pred EEEEecCCcEEEEeCC-CCceeeeecc-CCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccc-------------
Confidence 8889999999999999 88888887 5 67665 8999999999999999 79999999999642
Q ss_pred cccceeec-CCCccceeeeeECCCCceEEEee-cCC
Q psy6859 228 LDTDLFEF-AKNKTYPSGLSFSPDGNKFVTIS-MDR 261 (261)
Q Consensus 228 ~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~-~Dg 261 (261)
..++... ..|...+.+++|+|++++|++++ .||
T Consensus 256 -~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg 290 (402)
T 2aq5_A 256 -EEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDS 290 (402)
T ss_dssp -SSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCS
T ss_pred -cCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCC
Confidence 1112222 24677899999999999997544 564
No 90
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=8.7e-34 Score=223.82 Aligned_cols=225 Identities=15% Similarity=0.236 Sum_probs=189.9
Q ss_pred CCCCCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccce
Q psy6859 1 MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDM 80 (261)
Q Consensus 1 gH~~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~ 80 (261)
+|...|+++++ .++++++|+.||.|++||..+. +....+.+|.+.|.+++| ++++|++|+.||.|++||+.+++.
T Consensus 131 ~~~~~v~~~~~-d~~~l~~g~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~ 205 (435)
T 1p22_A 131 ETSKGVYCLQY-DDQKIVSGLRDNTIKIWDKNTL--ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM 205 (435)
T ss_dssp SSCCCEEEEEC-CSSEEEEEESSSCEEEEESSSC--CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE
T ss_pred CCCCcEEEEEE-CCCEEEEEeCCCeEEEEeCCCC--eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE
Confidence 36678999887 4779999999999999999887 788889999999999998 678999999999999999999999
Q ss_pred eeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeE-EeecCCcceEEEEEEeCCCCceEEEEecCC
Q psy6859 81 INMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINM-IKLDFTPLTVECIHYLGDAIPTAAVSDQDS 159 (261)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 159 (261)
+..+..+...+..+.+ +++.++++ +.|+.|++||+++++.... .....+...+.+++++++. +++++.|
T Consensus 206 ~~~~~~h~~~v~~l~~--~~~~l~s~----s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----l~s~~~d 275 (435)
T 1p22_A 206 LNTLIHHCEAVLHLRF--NNGMMVTC----SKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKY----IVSASGD 275 (435)
T ss_dssp EEEECCCCSCEEEEEC--CTTEEEEE----ETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTE----EEEEETT
T ss_pred EEEEcCCCCcEEEEEE--cCCEEEEe----eCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCE----EEEEeCC
Confidence 8888876666555554 45555554 8999999999998765532 2233455688899984433 8899999
Q ss_pred CeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCc
Q psy6859 160 SHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNK 239 (261)
Q Consensus 160 ~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (261)
+.|++||++ +++++..+. .|...|.++.++ +++|++++.||.|++||++ +++++..+.+|.
T Consensus 276 g~i~vwd~~-~~~~~~~~~-~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~---------------~~~~~~~~~~h~ 336 (435)
T 1p22_A 276 RTIKVWNTS-TCEFVRTLN-GHKRGIACLQYR--DRLVVSGSSDNTIRLWDIE---------------CGACLRVLEGHE 336 (435)
T ss_dssp SEEEEEETT-TCCEEEEEE-CCSSCEEEEEEE--TTEEEEEETTSCEEEEETT---------------TCCEEEEECCCS
T ss_pred CeEEEEECC-cCcEEEEEc-CCCCcEEEEEeC--CCEEEEEeCCCeEEEEECC---------------CCCEEEEEeCCc
Confidence 999999999 889999998 899999999984 6799999999999999995 467888899999
Q ss_pred cceeeeeECCCCceEEEeecCC
Q psy6859 240 TYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 240 ~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
..|.+++| ++++|++|+.||
T Consensus 337 ~~v~~~~~--~~~~l~sg~~dg 356 (435)
T 1p22_A 337 ELVRCIRF--DNKRIVSGAYDG 356 (435)
T ss_dssp SCEEEEEC--CSSEEEEEETTS
T ss_pred CcEEEEEe--cCCEEEEEeCCC
Confidence 99999999 788999999986
No 91
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=4.5e-34 Score=220.29 Aligned_cols=205 Identities=8% Similarity=0.035 Sum_probs=162.5
Q ss_pred CCCCeEEEEEcC-CCeEE--EecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccc
Q psy6859 2 HRSPITHVVVTK-TDFVI--TASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINF 78 (261)
Q Consensus 2 H~~~v~~~~~~~-~~~l~--s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~ 78 (261)
|...+.+++|+| +++++ +++.|++|+|||+.+. +++..+. |.+.|.+++|+||++++++++.+ .+++|+..++
T Consensus 132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~--~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~ 207 (365)
T 4h5i_A 132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL--TEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTG 207 (365)
T ss_dssp TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT--EEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTC
T ss_pred cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC--cEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccC
Confidence 445688999999 88765 5567999999999987 6777776 77899999999999999998855 5667777777
Q ss_pred ceeeee--eccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCcee--eEEeecCCcceEEEEEEeCCCCceEEE
Q psy6859 79 DMINMI--KLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMI--NMIKLDFTPLTVECIHYLGDAIPTAAV 154 (261)
Q Consensus 79 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (261)
+.+... ..+...+..+.+++++..++++...++....+.+|++...... .......+...|.+++|+|++.+ ++
T Consensus 208 ~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~--la 285 (365)
T 4h5i_A 208 SCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGEL--AV 285 (365)
T ss_dssp CEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCE--EE
T ss_pred cceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCc--eE
Confidence 655433 2345567778889999888776222222237888998776432 23334445668999999999986 89
Q ss_pred EecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859 155 SDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK 213 (261)
Q Consensus 155 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 213 (261)
+|+.|+.|+|||++ +++++..+..+|..+|++++|+|||++||+++.|++|+|||+..
T Consensus 286 sgs~D~~V~iwd~~-~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 286 LASNDNSIALVKLK-DLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EEETTSCEEEEETT-TTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred EEcCCCEEEEEECC-CCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 99999999999999 88988876338999999999999999999999999999999964
No 92
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=9.7e-34 Score=214.16 Aligned_cols=200 Identities=21% Similarity=0.288 Sum_probs=177.9
Q ss_pred eeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeE
Q psy6859 37 EFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRV 116 (261)
Q Consensus 37 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i 116 (261)
.....+.+|.+.|++++|+|++++|++++.||.|++|++.+++....+..+...+..+.++++++.++++ +.|+.|
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~----~~d~~i 89 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA----SDDKTL 89 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE----ETTSEE
T ss_pred eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEE----CCCCEE
Confidence 5677889999999999999999999999999999999999999888888888888889999998877776 899999
Q ss_pred EEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCE
Q psy6859 117 HIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQV 196 (261)
Q Consensus 117 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 196 (261)
++||+++++.+..+..+ ...+.++.|+|++.. +++++.|+.|++||++ +++.+..+. .|..+|.+++|+|++++
T Consensus 90 ~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~--l~s~~~d~~i~iwd~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~ 163 (312)
T 4ery_A 90 KIWDVSSGKCLKTLKGH--SNYVFCCNFNPQSNL--IVSGSFDESVRIWDVK-TGKCLKTLP-AHSDPVSAVHFNRDGSL 163 (312)
T ss_dssp EEEETTTCCEEEEEECC--SSCEEEEEECSSSSE--EEEEETTSCEEEEETT-TCCEEEEEC-CCSSCEEEEEECTTSSE
T ss_pred EEEECCCCcEEEEEcCC--CCCEEEEEEcCCCCE--EEEEeCCCcEEEEECC-CCEEEEEec-CCCCcEEEEEEcCCCCE
Confidence 99999999888887754 457899999999875 8899999999999999 888888897 89999999999999999
Q ss_pred EEEEcCCCeEEEeecccccccCCeeeeeecccccceeec-CCCccceeeeeECCCCceEEEeecCC
Q psy6859 197 VVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEF-AKNKTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 197 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
|++++.||.|++||+++ ++.+..+ ..+...+..++|+|++++|++++.||
T Consensus 164 l~~~~~d~~i~~wd~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 214 (312)
T 4ery_A 164 IVSSSYDGLCRIWDTAS---------------GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 214 (312)
T ss_dssp EEEEETTSCEEEEETTT---------------CCEEEEECCSSCCCEEEEEECTTSSEEEEEETTT
T ss_pred EEEEeCCCcEEEEECCC---------------CceeeEEeccCCCceEEEEECCCCCEEEEEcCCC
Confidence 99999999999999954 4444444 34667899999999999999999886
No 93
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=7e-34 Score=213.43 Aligned_cols=203 Identities=15% Similarity=0.235 Sum_probs=163.4
Q ss_pred EEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccc--cceeeeeeccCcceeEEEEeec--CCceeeeeeecCCCCe
Q psy6859 40 KHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVIN--FDMINMIKLDFTPLTVECIHYL--GDAIPTAAVSDQDSSR 115 (261)
Q Consensus 40 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~d~~ 115 (261)
..+.+|.+.|++++|+|++++|++++.|++|++||+.. .+.+..+..+..++..+.+.++ ++.++++ +.|++
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~----s~D~~ 78 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASC----SYDGK 78 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEE----ETTTE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEE----cCCCE
Confidence 45678999999999999999999999999999999974 3567777778778888887653 5666555 89999
Q ss_pred EEEEEcCCCceeeEEeecCCcceEEEEEEeCC--CCceEEEEecCCCeEEEEEccCCCc--cceeeccCcccCeEEEEEc
Q psy6859 116 VHIYDCKGNDMINMIKLDFTPLTVECIHYLGD--AIPTAAVSDQDSSHVHIYDCKGNGT--PLHVLDRLHTKPVVLIKFN 191 (261)
Q Consensus 116 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~v~~~~~~ 191 (261)
|++||+++++.........+...+.+++|+|+ +. ++++++.|+.|++||++ ... ....+. +|...|.+++|+
T Consensus 79 v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~-~~~~~~~~~~~-~h~~~v~~~~~~ 154 (297)
T 2pm7_B 79 VMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFK-ENGTTSPIIID-AHAIGVNSASWA 154 (297)
T ss_dssp EEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBC-SSSCBCCEEEE-CCSSCEEEEEEC
T ss_pred EEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEec-CCCceeeeeee-cccCccceEeec
Confidence 99999998753333333345668999999997 54 38899999999999998 442 234565 899999999999
Q ss_pred CC-------------CCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCC---ceEE
Q psy6859 192 PI-------------YQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDG---NKFV 255 (261)
Q Consensus 192 ~~-------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~ 255 (261)
|+ +++|++++.|+.|++||++++. ........+.+|...|.+++|+|++ ++||
T Consensus 155 p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~-----------~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~la 223 (297)
T 2pm7_B 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA-----------QTYVLESTLEGHSDWVRDVAWSPTVLLRSYMA 223 (297)
T ss_dssp CCC------------CCEEEEEETTSCEEEEEEETTT-----------TEEEEEEEECCCSSCEEEEEECCCCSSSEEEE
T ss_pred CCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCC-----------ceEEEEEEecCCCCceEEEEECCCCCCceEEE
Confidence 97 5799999999999999986421 1122456788999999999999984 8999
Q ss_pred EeecCC
Q psy6859 256 TISMDR 261 (261)
Q Consensus 256 s~~~Dg 261 (261)
+++.||
T Consensus 224 s~s~D~ 229 (297)
T 2pm7_B 224 SVSQDR 229 (297)
T ss_dssp EEETTS
T ss_pred EEECCC
Confidence 999986
No 94
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4.5e-34 Score=234.38 Aligned_cols=233 Identities=14% Similarity=0.123 Sum_probs=199.4
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCC--ceeeeEEeeccccc-eeEEEEee--CCCEEEEEeCCCcEEEEE
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEE--GIEFVKHFRSHLGV-IHSICTNY--NGTLLCTVASDKAMKVFD 74 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~--~~~~~~~~~~~~~~-v~~~~~~~--~~~~l~s~~~dg~v~~wd 74 (261)
+|.+.|++++|+| +++|++++ ++.|++|++.+. ..+....+.+|... |.+++|+| ++++|++++.||.|++||
T Consensus 16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~ 94 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG 94 (615)
T ss_dssp CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEE
T ss_pred CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEe
Confidence 4889999999999 88999888 789999999864 11466788999999 99999999 999999999999999999
Q ss_pred cccc--------ceeeeeeccCcceeEEEEeecCCceeeeeeecCCC----CeEEEEEcCCCceeeEEeecCCcceEEEE
Q psy6859 75 VINF--------DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS----SRVHIYDCKGNDMINMIKLDFTPLTVECI 142 (261)
Q Consensus 75 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 142 (261)
+.++ +....+..+..++..+.+++++..++++ +.+ +.|.+|| .++.+..+.. +...+.++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~----~~~~~~~~~v~~~d--~~~~~~~~~~--~~~~v~~~ 166 (615)
T 1pgu_A 95 WTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV----GEGRDNFGVFISWD--SGNSLGEVSG--HSQRINAC 166 (615)
T ss_dssp EEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEE----ECCSSCSEEEEETT--TCCEEEECCS--CSSCEEEE
T ss_pred CCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEe----ccCCCCccEEEEEE--CCCcceeeec--CCccEEEE
Confidence 9754 5666777677788899999999887776 444 6888888 4555655554 55689999
Q ss_pred EEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCccc---CeEEEEEcCC-CCEEEEEcCCCeEEEeecccccccC
Q psy6859 143 HYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTK---PVVLIKFNPI-YQVVVSVDKAGILEYWSGYKQEFKF 218 (261)
Q Consensus 143 ~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~ 218 (261)
.|+|++.. ++++++.|+.|++||+. +++++..+. .|.. .|++++|+|+ +++|++++.||.|++||+++
T Consensus 167 ~~~~~~~~-~l~~~~~d~~v~vwd~~-~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~----- 238 (615)
T 1pgu_A 167 HLKQSRPM-RSMTVGDDGSVVFYQGP-PFKFSASDR-THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS----- 238 (615)
T ss_dssp EECSSSSC-EEEEEETTTEEEEEETT-TBEEEEEEC-SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT-----
T ss_pred EECCCCCc-EEEEEeCCCcEEEEeCC-Ccceeeeec-ccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCC-----
Confidence 99999874 37888899999999998 888999997 8988 9999999999 99999999999999999954
Q ss_pred Ceeeeeecccccceeec-C---CCccceeeeeECCCCceEEEeecCC
Q psy6859 219 PKCVHFESKLDTDLFEF-A---KNKTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 219 ~~~~~~~~~~~~~~~~~-~---~~~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
++.+..+ . .|...|.+++|+ ++++|++++.||
T Consensus 239 ----------~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~ 274 (615)
T 1pgu_A 239 ----------GEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADA 274 (615)
T ss_dssp ----------CCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTS
T ss_pred ----------CCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCC
Confidence 5667777 5 899999999999 999999999886
No 95
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.8e-34 Score=217.45 Aligned_cols=204 Identities=12% Similarity=0.174 Sum_probs=160.3
Q ss_pred CCCCCeEEEEEcC---CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeC--CCEEEEEeCCCcEEEEEc
Q psy6859 1 MHRSPITHVVVTK---TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYN--GTLLCTVASDKAMKVFDV 75 (261)
Q Consensus 1 gH~~~v~~~~~~~---~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~v~~wd~ 75 (261)
||.++|++++|+| +++|++|+.|++|++||+.++..+....+.+|...|.+++|+|+ +.+|++++.|++|++||+
T Consensus 55 gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~ 134 (316)
T 3bg1_A 55 GHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTY 134 (316)
T ss_dssp CCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEE
T ss_pred CCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEec
Confidence 7999999999975 68999999999999999987644566778899999999999997 789999999999999999
Q ss_pred cccce---eeeeeccCcceeEEEEeecC-----------------CceeeeeeecCCCCeEEEEEcCCCc---eeeEEee
Q psy6859 76 INFDM---INMIKLDFTPLTVECIHYLG-----------------DAIPTAAVSDQDSSRVHIYDCKGND---MINMIKL 132 (261)
Q Consensus 76 ~~~~~---~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~s~~~d~~i~i~d~~~~~---~~~~~~~ 132 (261)
..+.. ...+..+...+..+.+.++. ..+ ++++.|+.|++||++... .+..+.
T Consensus 135 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~sgs~D~~v~lWd~~~~~~~~~~~~l~- 209 (316)
T 3bg1_A 135 TGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRF----ASGGCDNLIKLWKEEEDGQWKEEQKLE- 209 (316)
T ss_dssp CSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBE----ECCBTTSBCCEEEECTTSCEEEEECCB-
T ss_pred CCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceE----EEecCCCeEEEEEeCCCCccceeeecc-
Confidence 86532 23333344445555665542 233 345899999999997552 333333
Q ss_pred cCCcceEEEEEEeCCCC--ceEEEEecCCCeEEEEEccCCC---c-cceeeccCcccCeEEEEEcCCCCEEEEEcCCCeE
Q psy6859 133 DFTPLTVECIHYLGDAI--PTAAVSDQDSSHVHIYDCKGNG---T-PLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGIL 206 (261)
Q Consensus 133 ~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~i~d~~~~~---~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 206 (261)
.+...|.+++|+|++. ..++++++.|++|++||++ .. . ....+. .|...|.+++|+|++++|++++.|+.|
T Consensus 210 -~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~-~~~~~~~~~~~~~-~~~~~v~~v~~sp~g~~las~~~D~~v 286 (316)
T 3bg1_A 210 -AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCD-DASSNTWSPKLLH-KFNDVVWHVSWSITANILAVSGGDNKV 286 (316)
T ss_dssp -CCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECS-STTCCCCBCCEEE-ECSSCEEEEEECTTTCCEEEEESSSCE
T ss_pred -cCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEcc-Cccccchhhhhhh-cCCCcEEEEEEcCCCCEEEEEcCCCeE
Confidence 4566899999999861 1248999999999999997 42 1 233444 688999999999999999999999999
Q ss_pred EEeecc
Q psy6859 207 EYWSGY 212 (261)
Q Consensus 207 ~iwd~~ 212 (261)
++|+..
T Consensus 287 ~lw~~~ 292 (316)
T 3bg1_A 287 TLWKES 292 (316)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 999974
No 96
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-33 Score=223.06 Aligned_cols=234 Identities=12% Similarity=-0.020 Sum_probs=187.6
Q ss_pred CCCCCeEEEEEcC-CCeE-EEecCCCeEEEEecc--CCceeeeEEee--ccccceeEEEEeeCCCEEEEEeCCCcEEEEE
Q psy6859 1 MHRSPITHVVVTK-TDFV-ITASNDGHIKFWKKQ--EEGIEFVKHFR--SHLGVIHSICTNYNGTLLCTVASDKAMKVFD 74 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l-~s~~~d~~i~iw~~~--~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd 74 (261)
+|.+.|++++|+| +++| ++|+.||.|++|++. ++ +.+..+. .|...|.+++|+|++++|++++.+|.+++|+
T Consensus 100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~ 177 (450)
T 2vdu_B 100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSK--NVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSID 177 (450)
T ss_dssp CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSS--SCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCC--ceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 4677899999999 8885 899999999999998 55 5555554 5678899999999999999999999999999
Q ss_pred ccccceee----eeeccCcceeEEEEeec---CCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCC
Q psy6859 75 VINFDMIN----MIKLDFTPLTVECIHYL---GDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGD 147 (261)
Q Consensus 75 ~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (261)
+.+++... .+..+...+..+.++++ +..++++ +.|+.|++||+++++.+..+.. .+...+.+++|+ +
T Consensus 178 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~----~~d~~i~vwd~~~~~~~~~~~~-~h~~~v~~~~~s-d 251 (450)
T 2vdu_B 178 INSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITS----DRDEHIKISHYPQCFIVDKWLF-GHKHFVSSICCG-K 251 (450)
T ss_dssp TTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEE----ETTSCEEEEEESCTTCEEEECC-CCSSCEEEEEEC-S
T ss_pred cCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEE----cCCCcEEEEECCCCceeeeeec-CCCCceEEEEEC-C
Confidence 98877554 56667777888899998 7666665 8999999999999887766432 245689999999 8
Q ss_pred CCceEEEEecCCCeEEEEEccCCCccceeecc------------------------CcccCeEEEEEcCCCCEEEEEc-C
Q psy6859 148 AIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDR------------------------LHTKPVVLIKFNPIYQVVVSVD-K 202 (261)
Q Consensus 148 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~------------------------~~~~~v~~~~~~~~~~~l~~~~-~ 202 (261)
+.+ +++++.|+.|++||++ +++++..+.. .....|.+++|+|++++|++++ .
T Consensus 252 ~~~--l~s~~~d~~v~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~ 328 (450)
T 2vdu_B 252 DYL--LLSAGGDDKIFAWDWK-TGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEA 328 (450)
T ss_dssp TTE--EEEEESSSEEEEEETT-TCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETT
T ss_pred CCE--EEEEeCCCeEEEEECC-CCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECC
Confidence 775 8899999999999999 8887777641 1235689999999999999888 8
Q ss_pred CCeEEEeec--ccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEee
Q psy6859 203 AGILEYWSG--YKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTIS 258 (261)
Q Consensus 203 dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 258 (261)
|+.|++|++ ..+ ...+.+..+..| ..|.+++|+|++.++++++
T Consensus 329 d~~i~iw~~~~~~~------------~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~ 373 (450)
T 2vdu_B 329 TKCIIILEMSEKQK------------GDLALKQIITFP-YNVISLSAHNDEFQVTLDN 373 (450)
T ss_dssp CSEEEEEEECSSST------------TCEEEEEEEECS-SCEEEEEEETTEEEEEECC
T ss_pred CCeEEEEEeccCCC------------CceeeccEeccC-CceEEEEecCCcEEEEEec
Confidence 999999998 321 112455666777 8899999999654444444
No 97
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=5.1e-33 Score=212.86 Aligned_cols=200 Identities=13% Similarity=0.152 Sum_probs=161.1
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD 79 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~ 79 (261)
||...|++++|+| +.++++|+.|++|++||+.++ +.+..+.+|...|.+++|+|++++|++++.|++|++||+....
T Consensus 74 ~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~--~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~ 151 (343)
T 2xzm_R 74 GHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTG--TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC 151 (343)
T ss_dssp CCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSS--CEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE
T ss_pred cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC--cEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc
Confidence 7999999999999 899999999999999999987 7788899999999999999999999999999999999997433
Q ss_pred eeeeee--ccCcceeEEEEeecC----------CceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCC
Q psy6859 80 MINMIK--LDFTPLTVECIHYLG----------DAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGD 147 (261)
Q Consensus 80 ~~~~~~--~~~~~~~~~~~~~~~----------~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (261)
...... .+...+..+.+++.+ ..++ +++.|+.|++||. ..+....+.. +...+.+++|+|+
T Consensus 152 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~----s~~~d~~i~iwd~-~~~~~~~~~~--h~~~v~~~~~s~~ 224 (343)
T 2xzm_R 152 KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFA----SVGWDGRLKVWNT-NFQIRYTFKA--HESNVNHLSISPN 224 (343)
T ss_dssp EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEE----EEETTSEEEEEET-TTEEEEEEEC--CSSCEEEEEECTT
T ss_pred eeeeecccCCCceeeeeeeccccccccccCCCCCEEE----EEcCCCEEEEEcC-CCceeEEEcC--ccccceEEEECCC
Confidence 222211 344456677777665 3343 3489999999994 4445555544 4568999999999
Q ss_pred CCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccc
Q psy6859 148 AIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQ 214 (261)
Q Consensus 148 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 214 (261)
+.+ +++++.|+.|++||++....+...+ .+...|.+++|+|++++|+++ .|+.|++||+.+.
T Consensus 225 g~~--l~sgs~dg~v~iwd~~~~~~~~~~~--~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~ 286 (343)
T 2xzm_R 225 GKY--IATGGKDKKLLIWDILNLTYPQREF--DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQ 286 (343)
T ss_dssp SSE--EEEEETTCEEEEEESSCCSSCSEEE--ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSC
T ss_pred CCE--EEEEcCCCeEEEEECCCCcccceee--cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCC
Confidence 986 8999999999999996355556666 356679999999999988766 4778999998764
No 98
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.2e-32 Score=217.92 Aligned_cols=223 Identities=17% Similarity=0.287 Sum_probs=189.6
Q ss_pred CCCCCe-EEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859 1 MHRSPI-THVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD 79 (261)
Q Consensus 1 gH~~~v-~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~ 79 (261)
||.+.| +++.++ +++|++|+.||+|++||+.++ +.+..+.+|.+.|.+++|+ ++++++++.||+|++||+.+++
T Consensus 116 ~h~~~v~~~~~~~-g~~l~sg~~dg~i~vwd~~~~--~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~ 190 (445)
T 2ovr_B 116 GHDDHVITCLQFC-GNRIVSGSDDNTLKVWSAVTG--KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGE 190 (445)
T ss_dssp CSTTSCEEEEEEE-TTEEEEEETTSCEEEEETTTC--CEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTE
T ss_pred ccCCCcEEEEEEc-CCEEEEEECCCcEEEEECCCC--cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCc
Confidence 688875 555443 789999999999999999987 7888999999999999997 5599999999999999999999
Q ss_pred eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC
Q psy6859 80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS 159 (261)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 159 (261)
.+..+..+..++..+.+ +++.++++ +.|+.|++||+++++.+..+.. +...+.++.+++ .. +++++.|
T Consensus 191 ~~~~~~~h~~~v~~~~~--~~~~l~s~----s~dg~i~~wd~~~~~~~~~~~~--~~~~v~~~~~~~--~~--l~~~~~d 258 (445)
T 2ovr_B 191 CIHTLYGHTSTVRCMHL--HEKRVVSG----SRDATLRVWDIETGQCLHVLMG--HVAAVRCVQYDG--RR--VVSGAYD 258 (445)
T ss_dssp EEEEECCCSSCEEEEEE--ETTEEEEE----ETTSEEEEEESSSCCEEEEEEC--CSSCEEEEEECS--SC--EEEEETT
T ss_pred EEEEECCCCCcEEEEEe--cCCEEEEE----eCCCEEEEEECCCCcEEEEEcC--CcccEEEEEECC--CE--EEEEcCC
Confidence 98888877666655554 56666555 8999999999999988888775 445788888843 33 8889999
Q ss_pred CeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCc
Q psy6859 160 SHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNK 239 (261)
Q Consensus 160 ~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (261)
+.|++||++ +++++..+. .|...|.++.| ++.+|++++.|+.|++||+++ ++.+..+.+|.
T Consensus 259 g~i~iwd~~-~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~---------------~~~~~~~~~~~ 319 (445)
T 2ovr_B 259 FMVKVWDPE-TETCLHTLQ-GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVET---------------GNCIHTLTGHQ 319 (445)
T ss_dssp SCEEEEEGG-GTEEEEEEC-CCSSCEEEEEE--CSSEEEEEETTSCEEEEETTT---------------CCEEEEECCCC
T ss_pred CEEEEEECC-CCcEeEEec-CCCCceEEEEE--CCCEEEEEeCCCeEEEEECCC---------------CCEEEEEcCCc
Confidence 999999999 889999997 89999999999 788999999999999999954 67788888999
Q ss_pred cceeeeeECCCCceEEEeecCC
Q psy6859 240 TYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 240 ~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
..+.++.+ ++++|++++.||
T Consensus 320 ~~v~~~~~--~~~~l~~~~~dg 339 (445)
T 2ovr_B 320 SLTSGMEL--KDNILVSGNADS 339 (445)
T ss_dssp SCEEEEEE--ETTEEEEEETTS
T ss_pred ccEEEEEE--eCCEEEEEeCCC
Confidence 99988887 467999999886
No 99
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-33 Score=220.32 Aligned_cols=233 Identities=15% Similarity=0.081 Sum_probs=183.2
Q ss_pred CCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCc-eeeeEEee-------------------------------------
Q psy6859 3 RSPITHVVVTK-TDFVITASNDGHIKFWKKQEEG-IEFVKHFR------------------------------------- 43 (261)
Q Consensus 3 ~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~-~~~~~~~~------------------------------------- 43 (261)
..++++++|+| +++|+++ .++.|++||+.++. .+.+..+.
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 46899999999 7755554 57899999998763 01333333
Q ss_pred -----------------ccccceeEEEEeeCCCEE-EEEeCCCcEEEEEcc--ccceeeeeec--cCcceeEEEEeecCC
Q psy6859 44 -----------------SHLGVIHSICTNYNGTLL-CTVASDKAMKVFDVI--NFDMINMIKL--DFTPLTVECIHYLGD 101 (261)
Q Consensus 44 -----------------~~~~~v~~~~~~~~~~~l-~s~~~dg~v~~wd~~--~~~~~~~~~~--~~~~~~~~~~~~~~~ 101 (261)
+|.+.|.+++|+|++++| ++++.||.|++||+. +++.+..+.. +...+..+.+++++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence 233479999999999996 899999999999999 7888777753 345567888888888
Q ss_pred ceeeeeeecCCCCeEEEEEcCCCceee----EEeecCCcceEEEEEEeCC---CCceEEEEecCCCeEEEEEccCCCccc
Q psy6859 102 AIPTAAVSDQDSSRVHIYDCKGNDMIN----MIKLDFTPLTVECIHYLGD---AIPTAAVSDQDSSHVHIYDCKGNGTPL 174 (261)
Q Consensus 102 ~~~~~~~s~~~d~~i~i~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~i~i~d~~~~~~~~ 174 (261)
.++++ +.++.+.+|++.+++... .+.. +...+.+++|+|+ +.+ +++++.|+.|++||++ +++.+
T Consensus 163 ~l~~~----~~~g~v~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~sp~~~~~~~--l~s~~~d~~i~vwd~~-~~~~~ 233 (450)
T 2vdu_B 163 TVIIA----DKFGDVYSIDINSIPEEKFTQEPILG--HVSMLTDVHLIKDSDGHQF--IITSDRDEHIKISHYP-QCFIV 233 (450)
T ss_dssp EEEEE----ETTSEEEEEETTSCCCSSCCCCCSEE--CSSCEEEEEEEECTTSCEE--EEEEETTSCEEEEEES-CTTCE
T ss_pred EEEEE----eCCCcEEEEecCCcccccccceeeec--ccCceEEEEEcCCCCCCcE--EEEEcCCCcEEEEECC-CCcee
Confidence 77776 789999999998876543 4443 4457999999999 654 8899999999999998 78777
Q ss_pred eeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecC------------------
Q psy6859 175 HVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFA------------------ 236 (261)
Q Consensus 175 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 236 (261)
..+..+|...|++++|+ ++++|++++.|+.|++||++++ +++..+.
T Consensus 234 ~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (450)
T 2vdu_B 234 DKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTG---------------KNLSTFDYNSLIKPYLNDQHLAPPR 297 (450)
T ss_dssp EEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTC---------------CEEEEEECHHHHGGGCCTTSBC---
T ss_pred eeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCC---------------cEeeeecchhhhhhhhhhccccccc
Confidence 77333899999999999 9999999999999999999653 2222222
Q ss_pred -------CCccceeeeeECCCCceEEEee-cCC
Q psy6859 237 -------KNKTYPSGLSFSPDGNKFVTIS-MDR 261 (261)
Q Consensus 237 -------~~~~~v~~~~~s~~~~~l~s~~-~Dg 261 (261)
.....|.+++|+|++++|++++ .|+
T Consensus 298 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~ 330 (450)
T 2vdu_B 298 FQNENNDIIEFAVSKIIKSKNLPFVAFFVEATK 330 (450)
T ss_dssp -------CBCCCEEEEEECSSSSEEEEEETTCS
T ss_pred ccccccccceEEEEEEEEeCCCCEEEEEECCCC
Confidence 2345789999999999999998 553
No 100
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-33 Score=221.66 Aligned_cols=237 Identities=13% Similarity=0.105 Sum_probs=178.2
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeecccc-----ceeEEEEeeCCCEEEEEeCCCcEEEEE
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLG-----VIHSICTNYNGTLLCTVASDKAMKVFD 74 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~s~~~dg~v~~wd 74 (261)
+|.+.|++++||| |.+||+++.||.|++|+.+. ++..+. |.. .|.+++|+|||++|++|+.||+|++||
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~----~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd 157 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK----MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFS 157 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE----EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc----eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEE
Confidence 4678899999999 99999999999999999543 556666 665 499999999999999999999999999
Q ss_pred ccccce-------eeeee----ccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCcee---eEEeecCCcceEE
Q psy6859 75 VINFDM-------INMIK----LDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMI---NMIKLDFTPLTVE 140 (261)
Q Consensus 75 ~~~~~~-------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~---~~~~~~~~~~~~~ 140 (261)
+.++.. +..++ .+...+..+.++|++ +++. +.|+.|++||+.++... ..+.. .+...|.
T Consensus 158 ~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laas----s~D~tVrlWd~~~~~~~~~~~tL~~-~h~~~V~ 230 (588)
T 2j04_A 158 IRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAA----LSNNSVFSMTVSASSHQPVSRMIQN-ASRRKIT 230 (588)
T ss_dssp CCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEE----ETTCCEEEECCCSSSSCCCEEEEEC-CCSSCCC
T ss_pred CCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEE----eCCCeEEEEECCCCccccceeeecc-cccCcEE
Confidence 988753 45553 334567778888877 4444 78999999999987742 34432 2446789
Q ss_pred EEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEE--cCCCCEEEEEcCCCeEEEeecccccccC
Q psy6859 141 CIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKF--NPIYQVVVSVDKAGILEYWSGYKQEFKF 218 (261)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 218 (261)
+++|+ + .. +++++ ++.|++||+. +++...... +|...+.+++| +|+++.|+++++||+ ++|..+.-.+..
T Consensus 231 svaFs-g-~~--LASa~-~~tIkLWd~~-~~~~~~~~~-gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~sp 302 (588)
T 2j04_A 231 DLKIV-D-YK--VVLTC-PGYVHKIDLK-NYSISSLKT-GSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTA 302 (588)
T ss_dssp CEEEE-T-TE--EEEEC-SSEEEEEETT-TTEEEEEEC-SCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEEC
T ss_pred EEEEE-C-CE--EEEEe-CCeEEEEECC-CCeEEEEEc-CCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECC
Confidence 99999 3 32 66666 6999999998 666533332 79999999999 999999999999999 999975321111
Q ss_pred Ce---------eeeeecccccceeecCCCccceeeeeECCCCceEEEeec
Q psy6859 219 PK---------CVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISM 259 (261)
Q Consensus 219 ~~---------~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 259 (261)
.. ...|+ ..+..+..+.+ ...|++++|||||+.+|+++.
T Consensus 303 d~~l~a~~d~~v~lW~-~~g~~l~~~~~-~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 303 DNIIAPYLEKKFKKWS-TIWNEFNNYET-TLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp CCSSHHHHHHHHHHTT-TTTTSSSSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred CceEEEEcCCEEEEEE-CCCCceeeecc-ceEEEEEEECCCCCEEEEEEe
Confidence 10 01111 12233444444 667999999999999999864
No 101
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=6.3e-33 Score=212.15 Aligned_cols=207 Identities=13% Similarity=0.150 Sum_probs=170.0
Q ss_pred CCCCCeEEEEEcC---CCeEEEecCCCeEEEEeccCCce-------eeeEEeeccccceeEEEEeeC--CCEEEEEeCCC
Q psy6859 1 MHRSPITHVVVTK---TDFVITASNDGHIKFWKKQEEGI-------EFVKHFRSHLGVIHSICTNYN--GTLLCTVASDK 68 (261)
Q Consensus 1 gH~~~v~~~~~~~---~~~l~s~~~d~~i~iw~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg 68 (261)
+|..+|++++|+| +++|++|+.||.|++||+..... +....+..|...|.+++|+|+ +++|++++.||
T Consensus 55 ~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 134 (351)
T 3f3f_A 55 AHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDG 134 (351)
T ss_dssp CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTC
T ss_pred cCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCC
Confidence 6899999999998 68999999999999999987421 557778889999999999999 99999999999
Q ss_pred cEEEEEccccceeeeee-------------ccCcceeEEEEeec---CCceeeeeeecCCCCeEEEEEcCCCceeeEEee
Q psy6859 69 AMKVFDVINFDMINMIK-------------LDFTPLTVECIHYL---GDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKL 132 (261)
Q Consensus 69 ~v~~wd~~~~~~~~~~~-------------~~~~~~~~~~~~~~---~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~ 132 (261)
.|++||+.+++.+..+. .+......+.+.++ +..+++. +.++.+.+|+...++.......
T Consensus 135 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~ 210 (351)
T 3f3f_A 135 ILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVS----ALEQAIIYQRGKDGKLHVAAKL 210 (351)
T ss_dssp EEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEE----ETTEEEEEEECTTSCEEEEEEC
T ss_pred cEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEe----cCCCcEEEEccCCCceeeeeec
Confidence 99999998877655443 23344566667665 5555554 7899998888887766445555
Q ss_pred cCCcceEEEEEEeCCCCc--eEEEEecCCCeEEEEEccCCC---------------------------------------
Q psy6859 133 DFTPLTVECIHYLGDAIP--TAAVSDQDSSHVHIYDCKGNG--------------------------------------- 171 (261)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~i~i~d~~~~~--------------------------------------- 171 (261)
..+...+.+++|+|++.. .++++++.|+.|++||++ .+
T Consensus 211 ~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (351)
T 3f3f_A 211 PGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKIT-EKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAE 289 (351)
T ss_dssp CCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEE-ECC--------------------------------------
T ss_pred CCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCC-CCcCccccCCcccceeccCCCcccccccccccccccceeee
Confidence 556778999999999732 348899999999999998 43
Q ss_pred -------ccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859 172 -------TPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK 213 (261)
Q Consensus 172 -------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 213 (261)
+++..+. +|...|++++|+|++++|++++.||.|++||+.+
T Consensus 290 ~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 337 (351)
T 3f3f_A 290 LQSNLQVELLSEHD-DHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATY 337 (351)
T ss_dssp -CCSEEEEEEEEEC-TTSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred ecccccccEEEEEe-cccccEEEEEEcCCCCEEEEecCCCcEEEEecCc
Confidence 4566666 8999999999999999999999999999999964
No 102
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-33 Score=216.40 Aligned_cols=216 Identities=7% Similarity=0.027 Sum_probs=166.9
Q ss_pred CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcc---------ccceeeee
Q psy6859 14 TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVI---------NFDMINMI 84 (261)
Q Consensus 14 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~---------~~~~~~~~ 84 (261)
+.++++|+.||+|++||+.++ +.+..+. ...|.++.|+|+ +++++.|++|++|+.. +++.+..+
T Consensus 48 ~~~l~sg~~Dg~v~iwd~~~~--~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~ 120 (343)
T 3lrv_A 48 KWVCMCRCEDGALHFTQLKDS--KTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREI 120 (343)
T ss_dssp EEEEEEEEETTEEEEEEESSS--SCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCcEEEEECCCC--cEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEe
Confidence 568999999999999999887 5555555 467888899988 9999999999999765 34434444
Q ss_pred e-ccCcceeEEEEee--cCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCe
Q psy6859 85 K-LDFTPLTVECIHY--LGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSH 161 (261)
Q Consensus 85 ~-~~~~~~~~~~~~~--~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 161 (261)
. .+..++..+.+++ +++.++++ +.|+.|++||+++++.+.....+ +...+.+++|+|++.. +++|+.|+.
T Consensus 121 ~~~~~~~v~~~~~~~~~~~~~l~s~----s~dg~i~~wd~~~~~~~~~~~~~-~~~~i~~~~~~pdg~~--lasg~~dg~ 193 (343)
T 3lrv_A 121 EVDSANEIIYMYGHNEVNTEYFIWA----DNRGTIGFQSYEDDSQYIVHSAK-SDVEYSSGVLHKDSLL--LALYSPDGI 193 (343)
T ss_dssp ECCCSSCEEEEECCC---CCEEEEE----ETTCCEEEEESSSSCEEEEECCC-SSCCCCEEEECTTSCE--EEEECTTSC
T ss_pred ecCCCCCEEEEEcCCCCCCCEEEEE----eCCCcEEEEECCCCcEEEEEecC-CCCceEEEEECCCCCE--EEEEcCCCE
Confidence 4 2334577778888 77777666 89999999999999876555433 3446899999999975 889999999
Q ss_pred EEEEEccCCCccc-eeeccC-cccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecC---
Q psy6859 162 VHIYDCKGNGTPL-HVLDRL-HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFA--- 236 (261)
Q Consensus 162 i~i~d~~~~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--- 236 (261)
|++||++ +++.+ ..+. . |..+|++++|+|++.+|++++ |+.|++||+++ .+.+..+.
T Consensus 194 i~iwd~~-~~~~~~~~~~-~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~---------------~~~~~~~~~~~ 255 (343)
T 3lrv_A 194 LDVYNLS-SPDQASSRFP-VDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRK---------------DVGTLAYPTYT 255 (343)
T ss_dssp EEEEESS-CTTSCCEECC-CCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTS---------------STTCBSSCCCB
T ss_pred EEEEECC-CCCCCccEEe-ccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCC---------------CCcceeecccc
Confidence 9999999 77776 7787 6 999999999999999999999 55999999965 33333322
Q ss_pred CCcccee--eeeECCCCceEEEeec-CC
Q psy6859 237 KNKTYPS--GLSFSPDGNKFVTISM-DR 261 (261)
Q Consensus 237 ~~~~~v~--~~~~s~~~~~l~s~~~-Dg 261 (261)
.|...+. +++|+|+|++|++++. |+
T Consensus 256 ~~~~~~~~~~~~~~~~g~~l~~~s~~d~ 283 (343)
T 3lrv_A 256 IPEFKTGTVTYDIDDSGKNMIAYSNESN 283 (343)
T ss_dssp C-----CCEEEEECTTSSEEEEEETTTT
T ss_pred cccccccceEEEECCCCCEEEEecCCCC
Confidence 2444554 5999999999999876 53
No 103
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-33 Score=220.02 Aligned_cols=226 Identities=8% Similarity=0.013 Sum_probs=175.6
Q ss_pred CCCeEEEEEcC-CCeEEEecCCCeEEEEeccCC-----------------------------ceeeeEEeeccccceeEE
Q psy6859 3 RSPITHVVVTK-TDFVITASNDGHIKFWKKQEE-----------------------------GIEFVKHFRSHLGVIHSI 52 (261)
Q Consensus 3 ~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~-----------------------------~~~~~~~~~~~~~~v~~~ 52 (261)
...|.+++|+| |+++|+++.|++|+ +.... .......+ .|...|.++
T Consensus 15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~-~~~~~V~~v 91 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNS-QPVCYPRVC 91 (588)
T ss_dssp SSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTT-SCSCCEEEE
T ss_pred hccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeec-CCCCcEEEE
Confidence 35789999999 99999999999995 32221 00111111 357889999
Q ss_pred EEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCc-----ceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCce-
Q psy6859 53 CTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFT-----PLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDM- 126 (261)
Q Consensus 53 ~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~- 126 (261)
+|+|+|++|++++.||.|++||... ++..+. +.. .+..+.++|+++.++++ +.||+|++||+.++..
T Consensus 92 awSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsg----s~DGtVkIWd~~~~~l~ 164 (588)
T 2j04_A 92 KPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVG----NEDGELQFFSIRKNSEN 164 (588)
T ss_dssp EECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEE----ETTSEEEEEECCCCTTT
T ss_pred EECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEE----cCCCEEEEEECCCCccc
Confidence 9999999999999999999999544 555555 443 38889999999998887 9999999999998753
Q ss_pred ------eeEEee--cCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCcc---ceeeccCcccCeEEEEEcCCCC
Q psy6859 127 ------INMIKL--DFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTP---LHVLDRLHTKPVVLIKFNPIYQ 195 (261)
Q Consensus 127 ------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~ 195 (261)
+..+.. ..+...|.+++|+|++ +++++.|+.|++||+. .+.. .+++..+|...|.+++|+ ++
T Consensus 165 ~~~~i~l~ti~~~~~gh~~~V~sVawSPdg----Laass~D~tVrlWd~~-~~~~~~~~~tL~~~h~~~V~svaFs--g~ 237 (588)
T 2j04_A 165 TPEFYFESSIRLSDAGSKDWVTHIVWYEDV----LVAALSNNSVFSMTVS-ASSHQPVSRMIQNASRRKITDLKIV--DY 237 (588)
T ss_dssp CCCCEEEEEEECSCTTCCCCEEEEEEETTE----EEEEETTCCEEEECCC-SSSSCCCEEEEECCCSSCCCCEEEE--TT
T ss_pred cccceeeeeeecccccccccEEEEEEcCCc----EEEEeCCCeEEEEECC-CCccccceeeecccccCcEEEEEEE--CC
Confidence 455532 2245689999999998 5566779999999998 5553 345632688899999999 68
Q ss_pred EEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeE--CCCCceEEEeecCC
Q psy6859 196 VVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSF--SPDGNKFVTISMDR 261 (261)
Q Consensus 196 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~s~~~Dg 261 (261)
.||+++ ++.|++||+.+ ++......+|...|.+++| +||+..|+++++||
T Consensus 238 ~LASa~-~~tIkLWd~~~---------------~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG 289 (588)
T 2j04_A 238 KVVLTC-PGYVHKIDLKN---------------YSISSLKTGSLENFHIIPLNHEKESTILLMSNKTS 289 (588)
T ss_dssp EEEEEC-SSEEEEEETTT---------------TEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCE
T ss_pred EEEEEe-CCeEEEEECCC---------------CeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCC
Confidence 999987 69999999853 3332223379999999999 99999999999875
No 104
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=6.4e-32 Score=212.24 Aligned_cols=205 Identities=12% Similarity=0.144 Sum_probs=175.5
Q ss_pred CCCCCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccce
Q psy6859 1 MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDM 80 (261)
Q Consensus 1 gH~~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~ 80 (261)
||...|.+++++ +.+|++|+.|+.+++|+..... ..+..+.+|...+..+.|+|+++++++++.|+.+++|+..+++.
T Consensus 187 ~h~~~v~~~s~~-~~~l~sgs~d~~i~~~d~~~~~-~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~ 264 (420)
T 4gga_A 187 SHSARVGSLSWN-SYILSSGSRSGHIHHHDVRVAE-HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG 264 (420)
T ss_dssp CCSSCEEEEEEE-TTEEEEEETTSEEEEEETTSSS-CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSS
T ss_pred CCCCceEEEeeC-CCEEEEEeCCCceeEeeecccc-eeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccc
Confidence 689999998876 5689999999999999988643 56778899999999999999999999999999999999987653
Q ss_pred ----eeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEe
Q psy6859 81 ----INMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSD 156 (261)
Q Consensus 81 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (261)
+.....+...+....+.+.+..+++. .+|+.|++|++||+++++....+..+ ..+.++.|++++..+++++|
T Consensus 265 ~~~~~~~~~~~~~~V~~~~~~p~~~~~la~-~~gs~D~~I~iwd~~t~~~~~~~~~~---~~v~~~~~~~~~~~lv~~sg 340 (420)
T 4gga_A 265 GWVPLQTFTQHQGAVKAVAWCPWQSNVLAT-GGGTSDRHIRIWNVCSGACLSAVDAH---SQVCSILWSPHYKELISGHG 340 (420)
T ss_dssp CSCCSEEECCCSSCEEEEEECTTCTTEEEE-EECTTTCEEEEEETTTTEEEEEEECS---SCEEEEEEETTTTEEEEEEC
T ss_pred cceeeeeecccCCceeeeeeCCCcccEEEE-EeecCCCEEEEEeCCccccceeeccc---cceeeeeecCCCCeEEEEEe
Confidence 33444555667777888877666543 45688999999999999988887754 36789999999998666667
Q ss_pred cCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859 157 QDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK 213 (261)
Q Consensus 157 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 213 (261)
..|+.|++||++ +++++.++. +|...|++++|+|+|++|++|+.|++|++||+.+
T Consensus 341 ~~d~~I~iwd~~-~~~~v~~l~-gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 341 FAQNQLVIWKYP-TMAKVAELK-GHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 395 (420)
T ss_dssp TTTCCEEEEETT-TCCEEEEEC-CCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred cCCCEEEEEECC-CCcEEEEEc-CCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 789999999999 899999998 9999999999999999999999999999999853
No 105
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=1.3e-31 Score=198.92 Aligned_cols=233 Identities=11% Similarity=0.075 Sum_probs=163.7
Q ss_pred eEEEEEcC-CC---eEEEecCCCeEEEEeccCC-ceeeeEEeecccc-------------------------ceeEEEEe
Q psy6859 6 ITHVVVTK-TD---FVITASNDGHIKFWKKQEE-GIEFVKHFRSHLG-------------------------VIHSICTN 55 (261)
Q Consensus 6 v~~~~~~~-~~---~l~s~~~d~~i~iw~~~~~-~~~~~~~~~~~~~-------------------------~v~~~~~~ 55 (261)
+.++.|-. +- .++++++ ..|++|+..+. ..+.+.++..|+. .|+.++++
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s 120 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS 120 (356)
T ss_dssp EEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-
T ss_pred EeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEEC
Confidence 34455544 32 5666665 79999998874 3356666665543 56677778
Q ss_pred eC----CCEEEEEeC--------------------CCcEEEEEcc-ccceeeeeeccCcceeEEEEee---cCCceeeee
Q psy6859 56 YN----GTLLCTVAS--------------------DKAMKVFDVI-NFDMINMIKLDFTPLTVECIHY---LGDAIPTAA 107 (261)
Q Consensus 56 ~~----~~~l~s~~~--------------------dg~v~~wd~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 107 (261)
|| ++++++++. |+.|++|++. +++.+..+..+......+.+++ ++..+++.
T Consensus 121 pd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSg- 199 (356)
T 2w18_A 121 SDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGT- 199 (356)
T ss_dssp -----CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEE-
T ss_pred CCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEe-
Confidence 88 777777653 7777888873 4666666666666677777777 44555554
Q ss_pred eecCCCCeEEEEEcCCCceeeEEeecC-CcceEEEEEEeCCCCceE----------EEEecCCCeEEEEEccCCCcccee
Q psy6859 108 VSDQDSSRVHIYDCKGNDMINMIKLDF-TPLTVECIHYLGDAIPTA----------AVSDQDSSHVHIYDCKGNGTPLHV 176 (261)
Q Consensus 108 ~s~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----------~~~~~~d~~i~i~d~~~~~~~~~~ 176 (261)
+.|++|+|||+++++.++.+..+. ....+.+++|+|++...+ +++|+.|++|++||.. +++.+..
T Consensus 200 ---S~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~-tgk~l~v 275 (356)
T 2w18_A 200 ---TIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPK-TTLSVGV 275 (356)
T ss_dssp ---ETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETT-TTEEEEE
T ss_pred ---cCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECC-CCEEEEE
Confidence 899999999999999999987533 234677889999987532 3678899999999998 8877665
Q ss_pred e----ccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCcccee-eeeECCCC
Q psy6859 177 L----DRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPS-GLSFSPDG 251 (261)
Q Consensus 177 ~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~ 251 (261)
+ +.+|...+.+..+ ++.++++++.|++|+|||+. +++++.++.+|...+. .++|||||
T Consensus 276 ~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~---------------tGk~l~tL~gH~~~vvs~vafSPDG 338 (356)
T 2w18_A 276 MLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLL---------------LGQCTALLPPVSDQHWSFVKWSGTD 338 (356)
T ss_dssp EEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETT---------------TCSEEEEECCC--CCCCEEEECSSS
T ss_pred EEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECC---------------CCcEEEEecCCCCCeEEEEEECCCC
Confidence 5 1256555544444 48899999999999999994 5788999999988766 58999999
Q ss_pred ceEEEeecCC
Q psy6859 252 NKFVTISMDR 261 (261)
Q Consensus 252 ~~l~s~~~Dg 261 (261)
++|++|+.||
T Consensus 339 ~~LaSGS~D~ 348 (356)
T 2w18_A 339 SHLLAGQKDG 348 (356)
T ss_dssp SEEEEECTTS
T ss_pred CEEEEEECCC
Confidence 9999999996
No 106
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=5e-33 Score=219.47 Aligned_cols=202 Identities=12% Similarity=0.114 Sum_probs=163.0
Q ss_pred eEEeeccccceeEEEEee-CCCEEEEEeCCCcEEEEEccccceeee--eeccCcceeEEEEee-cCCceeeeeeecCCCC
Q psy6859 39 VKHFRSHLGVIHSICTNY-NGTLLCTVASDKAMKVFDVINFDMINM--IKLDFTPLTVECIHY-LGDAIPTAAVSDQDSS 114 (261)
Q Consensus 39 ~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~~wd~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~d~ 114 (261)
.....+|...|++|+|+| ++++||+|+.||.|+|||+.+++.... +..+..++..+.++| ++..++++ +.|+
T Consensus 112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~----s~D~ 187 (435)
T 4e54_B 112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYAS----SMEG 187 (435)
T ss_dssp CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEE----CSSS
T ss_pred cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEE----eCCC
Confidence 345567888999999999 567999999999999999987764443 345666788888886 45666655 9999
Q ss_pred eEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCC
Q psy6859 115 RVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIY 194 (261)
Q Consensus 115 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 194 (261)
+|++||++++........+.....+.+++|+|++.. +++|+.||.|++||++ ++.+..+. .|...|++++|+|++
T Consensus 188 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~g~~dg~i~~wd~~--~~~~~~~~-~h~~~v~~v~~~p~~ 262 (435)
T 4e54_B 188 TTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRM--VVTGDNVGNVILLNMD--GKELWNLR-MHKKKVTHVALNPCC 262 (435)
T ss_dssp CEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTE--EEEECSSSBEEEEESS--SCBCCCSB-CCSSCEEEEEECTTC
T ss_pred EEEEeeccCCceeEEeccCCCCccEEEEEECCCCCE--EEEEeCCCcEeeeccC--cceeEEEe-cccceEEeeeecCCC
Confidence 999999987755444444445556789999999975 8899999999999986 45677787 899999999999998
Q ss_pred C-EEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859 195 Q-VVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 195 ~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
+ +|++++.|+.|++||+++.. ....+....+|...|++++|+|+|++|++++.||
T Consensus 263 ~~~~~s~s~d~~v~iwd~~~~~------------~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~ 318 (435)
T 4e54_B 263 DWFLATASVDQTVKIWDLRQVR------------GKASFLYSLPHRHPVNAACFSPDGARLLTTDQKS 318 (435)
T ss_dssp SSEEEEEETTSBCCEEETTTCC------------SSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSS
T ss_pred ceEEEEecCcceeeEEeccccc------------ccceEEEeeeccccccceeECCCCCeeEEEcCCC
Confidence 7 78899999999999996531 1223334467999999999999999999999986
No 107
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-32 Score=208.93 Aligned_cols=206 Identities=16% Similarity=0.239 Sum_probs=169.3
Q ss_pred eeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcc--ccceeeeeeccCcceeEEEEeec--CCceeeeeeecCC
Q psy6859 37 EFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVI--NFDMINMIKLDFTPLTVECIHYL--GDAIPTAAVSDQD 112 (261)
Q Consensus 37 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~ 112 (261)
+++..+.+|.+.|++++|+|++++|++++.||.|++||+. +++.+..+..+..++..+.+.++ +..++++ +.
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~----~~ 77 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASC----SY 77 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEE----ET
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEe----cc
Confidence 4566788999999999999999999999999999999998 55677777777778888888766 6766666 89
Q ss_pred CCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCC--CCceEEEEecCCCeEEEEEccCCCc--cceeeccCcccCeEEE
Q psy6859 113 SSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGD--AIPTAAVSDQDSSHVHIYDCKGNGT--PLHVLDRLHTKPVVLI 188 (261)
Q Consensus 113 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~v~~~ 188 (261)
|+.|++||+++++.........+...+.+++|+|+ +.. +++++.|+.|++||++ ... ....+. .|...|.++
T Consensus 78 dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--l~~~~~d~~i~v~d~~-~~~~~~~~~~~-~~~~~v~~~ 153 (379)
T 3jrp_A 78 DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPL--LLVASSDGKVSVVEFK-ENGTTSPIIID-AHAIGVNSA 153 (379)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSE--EEEEETTSEEEEEECC-TTSCCCEEEEE-CCTTCEEEE
T ss_pred CCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCE--EEEecCCCcEEEEecC-CCCceeeEEec-CCCCceEEE
Confidence 99999999999874444444446678999999999 654 8888999999999998 552 334454 799999999
Q ss_pred EEcC-------------CCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCC---Cc
Q psy6859 189 KFNP-------------IYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPD---GN 252 (261)
Q Consensus 189 ~~~~-------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~ 252 (261)
+|+| ++.+|++++.|+.|++||++++. .....+..+.+|...|.+++|+|+ ++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~~~~~h~~~v~~~~~sp~~~~~~ 222 (379)
T 3jrp_A 154 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA-----------QTYVLESTLEGHSDWVRDVAWSPTVLLRS 222 (379)
T ss_dssp EECCCC----------CTTCEEEEEETTSCEEEEEEETTT-----------TEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred EEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCC-----------cceeeEEEEecccCcEeEEEECCCCCCCC
Confidence 9999 68999999999999999986431 122355677889999999999999 89
Q ss_pred eEEEeecCC
Q psy6859 253 KFVTISMDR 261 (261)
Q Consensus 253 ~l~s~~~Dg 261 (261)
+|++++.||
T Consensus 223 ~l~s~~~dg 231 (379)
T 3jrp_A 223 YLASVSQDR 231 (379)
T ss_dssp EEEEEETTS
T ss_pred eEEEEeCCC
Confidence 999999986
No 108
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=7.3e-32 Score=224.32 Aligned_cols=201 Identities=13% Similarity=0.183 Sum_probs=168.9
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD 79 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~ 79 (261)
||...|++++|+| +++|++|+.|++|+|||+.+. .....+.+|...|.+++|+|++++|++++.|++|++||.....
T Consensus 428 ~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~--~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~ 505 (694)
T 3dm0_A 428 GHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAG--VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC 505 (694)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT--EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC--cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCc
Confidence 7999999999999 899999999999999999987 7888899999999999999999999999999999999986543
Q ss_pred eeeee---eccCcceeEEEEeecCC--ceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEE
Q psy6859 80 MINMI---KLDFTPLTVECIHYLGD--AIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAV 154 (261)
Q Consensus 80 ~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (261)
..... ..+...+.++.+++++. .+++ ++.|+.|++||+++.+....+.. +...+.+++|+|++.. ++
T Consensus 506 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s----~s~d~~v~vwd~~~~~~~~~~~~--h~~~v~~v~~spdg~~--l~ 577 (694)
T 3dm0_A 506 KYTISEGGEGHRDWVSCVRFSPNTLQPTIVS----ASWDKTVKVWNLSNCKLRSTLAG--HTGYVSTVAVSPDGSL--CA 577 (694)
T ss_dssp EEEECSSTTSCSSCEEEEEECSCSSSCEEEE----EETTSCEEEEETTTCCEEEEECC--CSSCEEEEEECTTSSE--EE
T ss_pred ceeeccCCCCCCCcEEEEEEeCCCCcceEEE----EeCCCeEEEEECCCCcEEEEEcC--CCCCEEEEEEeCCCCE--EE
Confidence 32221 12444567777777653 3433 48999999999999888777765 4567999999999975 88
Q ss_pred EecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccccc
Q psy6859 155 SDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQE 215 (261)
Q Consensus 155 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 215 (261)
+++.|+.|++||++ +++.+..+. +...|.+++|+|++.+|++++ ++.|++||++++.
T Consensus 578 sg~~Dg~i~iwd~~-~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~ 634 (694)
T 3dm0_A 578 SGGKDGVVLLWDLA-EGKKLYSLE--ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKS 634 (694)
T ss_dssp EEETTSBCEEEETT-TTEEEECCB--CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTE
T ss_pred EEeCCCeEEEEECC-CCceEEEec--CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCC
Confidence 99999999999999 888888884 567899999999999888776 5669999998754
No 109
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.3e-31 Score=203.17 Aligned_cols=220 Identities=14% Similarity=0.169 Sum_probs=170.2
Q ss_pred EEecCCCe--EEEEeccCCceeeeEEeeccccceeEEEEeeC-CCEEEEEeCCCcEEEEEccccc-----eeeeeeccCc
Q psy6859 18 ITASNDGH--IKFWKKQEEGIEFVKHFRSHLGVIHSICTNYN-GTLLCTVASDKAMKVFDVINFD-----MINMIKLDFT 89 (261)
Q Consensus 18 ~s~~~d~~--i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~v~~wd~~~~~-----~~~~~~~~~~ 89 (261)
.+|...|+ +.++.......++..+|++|.+.|++|+|+|+ +++|+||+.|++|++||+.+.+ +...+..+..
T Consensus 8 ~~g~d~g~~~~~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~ 87 (340)
T 4aow_A 8 SSGVDLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSH 87 (340)
T ss_dssp ------------------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSS
T ss_pred ccccCCCCccEEEEEccCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCC
Confidence 34444454 33444444444677789999999999999997 6899999999999999997654 3455666777
Q ss_pred ceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccC
Q psy6859 90 PLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKG 169 (261)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~ 169 (261)
++..+.+++++..++++ +.|+.|++|+............. ...+....+.+++.. +++++.|+.+++||...
T Consensus 88 ~V~~~~~s~dg~~l~s~----~~d~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--l~s~s~d~~~~~~d~~~ 159 (340)
T 4aow_A 88 FVSDVVISSDGQFALSG----SWDGTLRLWDLTTGTTTRRFVGH--TKDVLSVAFSSDNRQ--IVSGSRDKTIKLWNTLG 159 (340)
T ss_dssp CEEEEEECTTSSEEEEE----ETTSEEEEEETTTTEEEEEEECC--SSCEEEEEECTTSSC--EEEEETTSCEEEECTTS
T ss_pred CEEEEEECCCCCEEEEE----cccccceEEeecccceeeeecCC--CCceeEEEEeecCcc--ceeecCCCeEEEEEeCC
Confidence 88899999999887776 89999999999988776666543 346677888888876 88999999999999973
Q ss_pred CCccceeeccCcccCeEEEEEcCCC--CEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeE
Q psy6859 170 NGTPLHVLDRLHTKPVVLIKFNPIY--QVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSF 247 (261)
Q Consensus 170 ~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 247 (261)
......... .|...+..++|++++ .++++++.|+.|++||+++ .+.+..+.+|...|++++|
T Consensus 160 ~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~---------------~~~~~~~~~h~~~v~~~~~ 223 (340)
T 4aow_A 160 VCKYTVQDE-SHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN---------------CKLKTNHIGHTGYLNTVTV 223 (340)
T ss_dssp CEEEEECSS-SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT---------------TEEEEEECCCSSCEEEEEE
T ss_pred CceEEEEec-cccCcccceEEccCCCCcEEEEEcCCCEEEEEECCC---------------CceeeEecCCCCcEEEEEE
Confidence 333344444 889999999999876 4788999999999999954 6778888999999999999
Q ss_pred CCCCceEEEeecCC
Q psy6859 248 SPDGNKFVTISMDR 261 (261)
Q Consensus 248 s~~~~~l~s~~~Dg 261 (261)
+|++++|++|+.||
T Consensus 224 s~~~~~l~s~s~Dg 237 (340)
T 4aow_A 224 SPDGSLCASGGKDG 237 (340)
T ss_dssp CTTSSEEEEEETTC
T ss_pred CCCCCEEEEEeCCC
Confidence 99999999999986
No 110
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.5e-31 Score=207.71 Aligned_cols=203 Identities=12% Similarity=0.131 Sum_probs=168.3
Q ss_pred eeeEEeeccccceeEEEEeeCC-CEEEEEeCCCcEEEEEccccceeeeeec--cCcceeEEEEee-cCCceeeeeeecCC
Q psy6859 37 EFVKHFRSHLGVIHSICTNYNG-TLLCTVASDKAMKVFDVINFDMINMIKL--DFTPLTVECIHY-LGDAIPTAAVSDQD 112 (261)
Q Consensus 37 ~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~v~~wd~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~s~~~ 112 (261)
+....+.+|...|.+++|+|++ ++|++++.||.|++||+.+++....+.. +...+..+.+++ ++..++++ +.
T Consensus 64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~----~~ 139 (383)
T 3ei3_B 64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVS----SI 139 (383)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEE----ET
T ss_pred ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEE----eC
Confidence 6677888999999999999998 9999999999999999998887777663 566777778877 55666555 89
Q ss_pred CCeEEEEEcCCCceeeEEee-cCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEc
Q psy6859 113 SSRVHIYDCKGNDMINMIKL-DFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFN 191 (261)
Q Consensus 113 d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~ 191 (261)
|+.|++||+++. .+..+.. ..+...+.+++|+|++.. +++++.|+.|++||++ ++++..+. .|...|.+++|+
T Consensus 140 d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~d~~i~i~d~~--~~~~~~~~-~h~~~v~~~~~~ 213 (383)
T 3ei3_B 140 RGATTLRDFSGS-VIQVFAKTDSWDYWYCCVDVSVSRQM--LATGDSTGRLLLLGLD--GHEIFKEK-LHKAKVTHAEFN 213 (383)
T ss_dssp TTEEEEEETTSC-EEEEEECCCCSSCCEEEEEEETTTTE--EEEEETTSEEEEEETT--SCEEEEEE-CSSSCEEEEEEC
T ss_pred CCEEEEEECCCC-ceEEEeccCCCCCCeEEEEECCCCCE--EEEECCCCCEEEEECC--CCEEEEec-cCCCcEEEEEEC
Confidence 999999999974 4444433 334467999999999985 8899999999999984 66788887 899999999999
Q ss_pred CCCC-EEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECC-CCceEEEeecCC
Q psy6859 192 PIYQ-VVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSP-DGNKFVTISMDR 261 (261)
Q Consensus 192 ~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~Dg 261 (261)
|+++ +|++++.|+.|++||+++.. ....++..+ +|...|.+++|+| ++++|++++.||
T Consensus 214 ~~~~~~l~s~~~d~~i~iwd~~~~~-----------~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~ 273 (383)
T 3ei3_B 214 PRCDWLMATSSVDATVKLWDLRNIK-----------DKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRN 273 (383)
T ss_dssp SSCTTEEEEEETTSEEEEEEGGGCC-----------STTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSS
T ss_pred CCCCCEEEEEeCCCEEEEEeCCCCC-----------cccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCC
Confidence 9999 89999999999999996521 113344444 6899999999999 999999999886
No 111
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.4e-32 Score=206.44 Aligned_cols=227 Identities=7% Similarity=0.014 Sum_probs=165.3
Q ss_pred CeEEEEEcCCCeEEEecCCCeEEEEeccCC-------ceeeeEEee-ccccceeEEEEee--CCCEEEEEeCCCcEEEEE
Q psy6859 5 PITHVVVTKTDFVITASNDGHIKFWKKQEE-------GIEFVKHFR-SHLGVIHSICTNY--NGTLLCTVASDKAMKVFD 74 (261)
Q Consensus 5 ~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~-------~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~s~~~dg~v~~wd 74 (261)
.|.++.|+|. +++++.|++|++|+.... ..+.+..+. +|.++|.+++|+| +++++++++.||+|++||
T Consensus 78 ~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd 155 (343)
T 3lrv_A 78 NPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQS 155 (343)
T ss_dssp CCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEE
T ss_pred CceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEE
Confidence 4555666666 999999999999987632 012233333 5778899999999 999999999999999999
Q ss_pred ccccceeeeeecc-CcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCcee-eEEeecCCcceEEEEEEeCCCCceE
Q psy6859 75 VINFDMINMIKLD-FTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMI-NMIKLDFTPLTVECIHYLGDAIPTA 152 (261)
Q Consensus 75 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (261)
+.+++.......+ ...+..+.+++++..++++ +.|+.|++||+++++.+ ..+.. .+...+.+++|+|++.+
T Consensus 156 ~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg----~~dg~i~iwd~~~~~~~~~~~~~-~h~~~v~~l~fs~~g~~-- 228 (343)
T 3lrv_A 156 YEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALY----SPDGILDVYNLSSPDQASSRFPV-DEEAKIKEVKFADNGYW-- 228 (343)
T ss_dssp SSSSCEEEEECCCSSCCCCEEEECTTSCEEEEE----CTTSCEEEEESSCTTSCCEECCC-CTTSCEEEEEECTTSSE--
T ss_pred CCCCcEEEEEecCCCCceEEEEECCCCCEEEEE----cCCCEEEEEECCCCCCCccEEec-cCCCCEEEEEEeCCCCE--
Confidence 9998886655333 3357788899988877666 89999999999998876 56654 24568999999999975
Q ss_pred EEEecCCCeEEEEEccCCCccceeecc--CcccCeE--EEEEcCCCCEEEEEcC-CCeEEEeecccccccCCeeeeeecc
Q psy6859 153 AVSDQDSSHVHIYDCKGNGTPLHVLDR--LHTKPVV--LIKFNPIYQVVVSVDK-AGILEYWSGYKQEFKFPKCVHFESK 227 (261)
Q Consensus 153 ~~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~~~v~--~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~ 227 (261)
+++++ ++.|++||++ ..+.+..+.. .|...+. +++|+|++++|++++. |+.+++|++...
T Consensus 229 l~s~~-~~~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~------------- 293 (343)
T 3lrv_A 229 MVVEC-DQTVVCFDLR-KDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK------------- 293 (343)
T ss_dssp EEEEE-SSBEEEEETT-SSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTT-------------
T ss_pred EEEEe-CCeEEEEEcC-CCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc-------------
Confidence 77777 5599999999 7766655540 2334444 6999999999999887 999999998532
Q ss_pred cccceeecCCCccceeeeeECC---CCceEEEeecCC
Q psy6859 228 LDTDLFEFAKNKTYPSGLSFSP---DGNKFVTISMDR 261 (261)
Q Consensus 228 ~~~~~~~~~~~~~~v~~~~~s~---~~~~l~s~~~Dg 261 (261)
...... .++..++|+| +.+.|++++.||
T Consensus 294 --~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~ 324 (343)
T 3lrv_A 294 --TKNWTK----DEESALCLQSDTADFTDMDVVCGDG 324 (343)
T ss_dssp --TCSEEE----EEEEECCC----CCCCEEEEEEETT
T ss_pred --ccceEe----cCceeEecCccccccceeEEEecCC
Confidence 111111 4556667776 666777666654
No 112
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1.1e-30 Score=200.69 Aligned_cols=239 Identities=10% Similarity=0.104 Sum_probs=172.3
Q ss_pred CeEEEEEcC-CCeE-EEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccc-cee
Q psy6859 5 PITHVVVTK-TDFV-ITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINF-DMI 81 (261)
Q Consensus 5 ~v~~~~~~~-~~~l-~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~-~~~ 81 (261)
.+..+++.+ ++.+ ++++.|++|++||..++ +.+..+. |...|.+++|+++ .++.+ .|+.|++||+.++ +.+
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~--~~~~~~~-~~~~v~~v~~~~~--~~~~~-~~~~i~i~d~~~~~~~~ 133 (355)
T 3vu4_A 60 HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKK--QDVSRIK-VDAPVKDLFLSRE--FIVVS-YGDVISVFKFGNPWKRI 133 (355)
T ss_dssp CCCEEEECTTSSEEEEECSSTTEEEEEETTTT--EEEEEEE-CSSCEEEEEECSS--EEEEE-ETTEEEEEESSTTCCBS
T ss_pred CeEEEEEcCCCCEEEEEECCccEEEEEECCCC--cEEEEEE-CCCceEEEEEcCC--EEEEE-EcCEEEEEECCCCceee
Confidence 466788887 6655 67888999999999887 7777776 6679999999887 44444 4789999999988 666
Q ss_pred eeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCc---------------e-eeEEeecCCcceEEEEEEe
Q psy6859 82 NMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGND---------------M-INMIKLDFTPLTVECIHYL 145 (261)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~---------------~-~~~~~~~~~~~~~~~~~~~ 145 (261)
..+.. +.....+.+ ..++. .+|+.+|.|++||+++++ + +..+. .+...|.+++|+
T Consensus 134 ~~~~~---~~~~~~~s~--~~la~--~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~--~h~~~v~~~~~s 204 (355)
T 3vu4_A 134 TDDIR---FGGVCEFSN--GLLVY--SNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK--AHTNPIKMVRLN 204 (355)
T ss_dssp SCCEE---EEEEEEEET--TEEEE--EESSCTTCEEEEECCC------------------CCEEEC--CCSSCEEEEEEC
T ss_pred EEecc---CCceEEEEc--cEEEE--eCCCcCcEEEEEECCCCCccccccccccccccCcccEEEE--ccCCceEEEEEC
Confidence 66654 444555555 22221 226899999999999765 1 34444 456689999999
Q ss_pred CCCCceEEEEecCCCe-EEEEEccCCCccceeeccC-cccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeee
Q psy6859 146 GDAIPTAAVSDQDSSH-VHIYDCKGNGTPLHVLDRL-HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVH 223 (261)
Q Consensus 146 ~~~~~~~~~~~~~d~~-i~i~d~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 223 (261)
|++.. +++++.|++ |++||++ +++++..+..+ |...|++++|+|++++|++++.|+.|++||++...........
T Consensus 205 ~~g~~--l~s~s~d~~~v~iwd~~-~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~ 281 (355)
T 3vu4_A 205 RKSDM--VATCSQDGTIIRVFKTE-DGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALK 281 (355)
T ss_dssp TTSSE--EEEEETTCSEEEEEETT-TCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETT
T ss_pred CCCCE--EEEEeCCCCEEEEEECC-CCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCccccccc
Confidence 99975 899999998 9999999 88999888623 9999999999999999999999999999999754221110000
Q ss_pred e-----eccccc--ceeec-CCCccceeeeeECCCCceEEEeecCC
Q psy6859 224 F-----ESKLDT--DLFEF-AKNKTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 224 ~-----~~~~~~--~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
. ...... ....+ ..+......++|+||+++|++++.||
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg 327 (355)
T 3vu4_A 282 GWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTR 327 (355)
T ss_dssp TTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTT
T ss_pred ceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCC
Confidence 0 000000 00011 11223346799999999999999886
No 113
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=1.2e-30 Score=205.59 Aligned_cols=235 Identities=14% Similarity=0.086 Sum_probs=190.8
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEE-eCCCcEEEEEcccc
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTV-ASDKAMKVFDVINF 78 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~v~~wd~~~~ 78 (261)
+|...|++++|+| +.++++++.|+.|++||+++. +.+..+..|...+.+++|+|++++++++ +.|+.|++||+.++
T Consensus 167 ~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~ 244 (433)
T 3bws_A 167 KKLGFVETISIPEHNELWVSQMQANAVHVFDLKTL--AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK 244 (433)
T ss_dssp TTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC--CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred ccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc--eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC
Confidence 5888999999999 889999999999999999886 6777888888999999999999988544 47999999999999
Q ss_pred ceeeeeeccCcceeEEEEeecCCceeeeeeecC----CCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEE
Q psy6859 79 DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ----DSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAV 154 (261)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (261)
+.+..+..+. ....+.++++++.+++...... .|+.|++||+++++.+..+.. +..+..++|+|++.. +++
T Consensus 245 ~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~---~~~~~~~~~~~~g~~-l~~ 319 (433)
T 3bws_A 245 LEIRKTDKIG-LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGP---PGNKRHIVSGNTENK-IYV 319 (433)
T ss_dssp EEEEECCCCS-EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEE---EECEEEEEECSSTTE-EEE
T ss_pred cEEEEecCCC-CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccC---CCCcceEEECCCCCE-EEE
Confidence 8887776543 3567778888887776622111 588999999999887766643 336788999999875 467
Q ss_pred EecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcC---------------CCeEEEeecccccccCC
Q psy6859 155 SDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDK---------------AGILEYWSGYKQEFKFP 219 (261)
Q Consensus 155 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------------dg~i~iwd~~~~~~~~~ 219 (261)
+++.++.|++||+. +++.+..+. +...+.+++|+|++++|++++. ||.|++||+.+
T Consensus 320 ~~~~~~~v~v~d~~-~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~------ 390 (433)
T 3bws_A 320 SDMCCSKIEVYDLK-EKKVQKSIP--VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT------ 390 (433)
T ss_dssp EETTTTEEEEEETT-TTEEEEEEE--CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT------
T ss_pred EecCCCEEEEEECC-CCcEEEEec--CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCC------
Confidence 77889999999998 888888874 7788999999999998887775 57999999854
Q ss_pred eeeeeecccccceeecCCCccceeeeeECCCCceEEEeec-CC
Q psy6859 220 KCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISM-DR 261 (261)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-Dg 261 (261)
++.+..+.. ...+.+++|+|+|++|++++. |+
T Consensus 391 ---------~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~ 423 (433)
T 3bws_A 391 ---------DTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDH 423 (433)
T ss_dssp ---------TEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTT
T ss_pred ---------CcEEEEecC-CCCCceEEEcCCCCEEEEEECCCC
Confidence 455555554 457899999999999998764 54
No 114
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-32 Score=231.29 Aligned_cols=237 Identities=14% Similarity=0.113 Sum_probs=182.3
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEE----ee-----ccccceeEEEEeeCCCEEEEEeCCCcE
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKH----FR-----SHLGVIHSICTNYNGTLLCTVASDKAM 70 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~----~~-----~~~~~v~~~~~~~~~~~l~s~~~dg~v 70 (261)
||...+.+++|+| +++|++|+.|++|++||+.++....... +. +|...|.+++|+||+++||+|+.||+|
T Consensus 433 G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV 512 (902)
T 2oaj_A 433 GGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDV 512 (902)
T ss_dssp CSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCE
T ss_pred CCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEE
Confidence 5777788888899 8999999999999999998753211111 11 788999999999999999999999999
Q ss_pred EEEEccccc---------------------------------------------eeeeeeccCcceeEEEEeecCCceee
Q psy6859 71 KVFDVINFD---------------------------------------------MINMIKLDFTPLTVECIHYLGDAIPT 105 (261)
Q Consensus 71 ~~wd~~~~~---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (261)
+|||+.+++ ++..+..+..++..+.+++++ .+++
T Consensus 513 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAs 591 (902)
T 2oaj_A 513 VLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGI 591 (902)
T ss_dssp EEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEE
T ss_pred EEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEE
Confidence 999998662 245556677788899999999 7766
Q ss_pred eeeecCCCCeEEEEEcCCCceeeEEee----cCCcceEEEEEEe-----CCCC-ceEEEEecCCCeEEEEEc---cCCCc
Q psy6859 106 AAVSDQDSSRVHIYDCKGNDMINMIKL----DFTPLTVECIHYL-----GDAI-PTAAVSDQDSSHVHIYDC---KGNGT 172 (261)
Q Consensus 106 ~~~s~~~d~~i~i~d~~~~~~~~~~~~----~~~~~~~~~~~~~-----~~~~-~~~~~~~~~d~~i~i~d~---~~~~~ 172 (261)
+ +.|++|++||+++...+..... ..+...|.+++|+ ||+. ...+++|+.|++|++||+ . +++
T Consensus 592 g----s~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~-~g~ 666 (902)
T 2oaj_A 592 A----YAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPAS-GGK 666 (902)
T ss_dssp E----ETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECG-GGC
T ss_pred E----eCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCC-CCc
Confidence 6 8999999999988776543222 1466789999999 8852 123899999999999999 5 677
Q ss_pred cceeeccCc-----ccCeEEEE-Ec----------------------CCCCEEEEEcCCCeEEEeecccccccCCeeeee
Q psy6859 173 PLHVLDRLH-----TKPVVLIK-FN----------------------PIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHF 224 (261)
Q Consensus 173 ~~~~~~~~~-----~~~v~~~~-~~----------------------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 224 (261)
.+..+. +| ..+|.+++ |+ +++.+|+++ +..|+||++.+
T Consensus 667 ~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~----------- 732 (902)
T 2oaj_A 667 FDVQLM-DITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGK----------- 732 (902)
T ss_dssp EEEEEE-EEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTC-----------
T ss_pred EEEEec-CceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCcc-----------
Confidence 777775 44 46777776 65 455555554 67899999954
Q ss_pred ecccccceeecCCCccceeee---e------ECCCCceEEEeecCC
Q psy6859 225 ESKLDTDLFEFAKNKTYPSGL---S------FSPDGNKFVTISMDR 261 (261)
Q Consensus 225 ~~~~~~~~~~~~~~~~~v~~~---~------~s~~~~~l~s~~~Dg 261 (261)
+++.+....|...+.++ . |++++..|++++.||
T Consensus 733 ----~k~~~k~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g 774 (902)
T 2oaj_A 733 ----SKSTHKGFKYPLAATGLSYISTVEKNNDRKNLTVIITLEING 774 (902)
T ss_dssp ----CCEEEEECSSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTS
T ss_pred ----ccceeeEcccceeeeEEEEEEeccccccccCceEEEEEeCCC
Confidence 56666555666666665 5 789999999999886
No 115
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-31 Score=224.81 Aligned_cols=205 Identities=14% Similarity=0.111 Sum_probs=167.3
Q ss_pred CCCCCeEEEEEcC---CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeC--CCEEEEEeCCCcEEEEEc
Q psy6859 1 MHRSPITHVVVTK---TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYN--GTLLCTVASDKAMKVFDV 75 (261)
Q Consensus 1 gH~~~v~~~~~~~---~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~v~~wd~ 75 (261)
||.++|++++|+| +++|++|+.||.|++||+.++.......+.+|...|.+++|+|+ ++++++++.||.|++||+
T Consensus 51 ~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl 130 (753)
T 3jro_A 51 GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEF 130 (753)
T ss_dssp CCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEC
T ss_pred CCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEe
Confidence 6999999999986 57999999999999999998754578888899999999999999 999999999999999999
Q ss_pred cccce--eeeeeccCcceeEEEEee-------------cCCceeeeeeecCCCCeEEEEEcCCCceee--EEeecCCcce
Q psy6859 76 INFDM--INMIKLDFTPLTVECIHY-------------LGDAIPTAAVSDQDSSRVHIYDCKGNDMIN--MIKLDFTPLT 138 (261)
Q Consensus 76 ~~~~~--~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~--~~~~~~~~~~ 138 (261)
.++.. ...+..+...+..+.+.+ ++..++++ +.||.|++||++++.... ......+...
T Consensus 131 ~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sg----s~dg~I~iwd~~~~~~~~~~~~~~~~h~~~ 206 (753)
T 3jro_A 131 KENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG----GADNLVKIWKYNSDAQTYVLESTLEGHSDW 206 (753)
T ss_dssp CSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEE----ETTSCEEEEEEETTTTEEEEEEEECCCSSC
T ss_pred ecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEE----ECCCeEEEEeccCCcccceeeeeecCCCCc
Confidence 87743 333444556677777777 35666555 899999999998774321 1223345668
Q ss_pred EEEEEEeCC---CCceEEEEecCCCeEEEEEccCCCc-----cceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEee
Q psy6859 139 VECIHYLGD---AIPTAAVSDQDSSHVHIYDCKGNGT-----PLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWS 210 (261)
Q Consensus 139 ~~~~~~~~~---~~~~~~~~~~~d~~i~i~d~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 210 (261)
+.+++|+|+ +.. +++++.||.|++||++ .+. .+.... .|...|++++|+|++++|++++.||.|++|+
T Consensus 207 V~~l~~sp~~~~~~~--l~s~s~Dg~I~iwd~~-~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd 282 (753)
T 3jro_A 207 VRDVAWSPTVLLRSY--LASVSQDRTCIIWTQD-NEQGPWKKTLLKEE-KFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282 (753)
T ss_dssp EEEEEECCCCSSSEE--EEEEESSSCEEEEEES-SSSSCCBCCBSSSS-CCSSCCCCEEECTTTCCEEEECSSSCEECCB
T ss_pred EEEEEeccCCCCCCE--EEEEecCCEEEEecCC-CCCCcceeEEeccC-CCCCceEEEEEcCCCCEEEEEcCCCEEEEEe
Confidence 999999999 654 8899999999999998 542 222333 6889999999999999999999999999999
Q ss_pred ccc
Q psy6859 211 GYK 213 (261)
Q Consensus 211 ~~~ 213 (261)
+..
T Consensus 283 ~~~ 285 (753)
T 3jro_A 283 ENL 285 (753)
T ss_dssp CCS
T ss_pred cCC
Confidence 874
No 116
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=2.6e-31 Score=197.33 Aligned_cols=183 Identities=9% Similarity=-0.011 Sum_probs=141.1
Q ss_pred CCCeEEEEeccCCceeeeEEeeccccceeEEEEee---CCCEEEEEeCCCcEEEEEccccceeeeeeccCc---ceeEEE
Q psy6859 22 NDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNY---NGTLLCTVASDKAMKVFDVINFDMINMIKLDFT---PLTVEC 95 (261)
Q Consensus 22 ~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~---~~~~~~ 95 (261)
.|+.|++|++...+ +.+..+.+|...+..++|++ ++++|++++.|++|+|||+.++++++++..+.. ......
T Consensus 155 ~d~~V~~~~~s~dG-~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~va 233 (356)
T 2w18_A 155 SDQQVEVMTFAEDG-GGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKA 233 (356)
T ss_dssp TTCEEEEEEECTTS-CEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEE
T ss_pred CCCcEEEEEECCCC-ceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEE
Confidence 48999999995532 67777888999999999999 779999999999999999999999999875432 344557
Q ss_pred EeecCCceeee--------eeecCCCCeEEEEEcCCCceeeEEeec---CCcceEEEEEEeCCCCceEEEEecCCCeEEE
Q psy6859 96 IHYLGDAIPTA--------AVSDQDSSRVHIYDCKGNDMINMIKLD---FTPLTVECIHYLGDAIPTAAVSDQDSSHVHI 164 (261)
Q Consensus 96 ~~~~~~~~~~~--------~~s~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i 164 (261)
+++++..+++. .++|+.|++|++||..+++.+..+... .+...+.+.+++ +. ++++++.|++|+|
T Consensus 234 fSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~--~lASgS~DgTIkI 309 (356)
T 2w18_A 234 YSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DH--CAAAILTSGTIAI 309 (356)
T ss_dssp EEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TT--EEEEEETTSCEEE
T ss_pred ECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CC--EEEEEcCCCcEEE
Confidence 88887766442 256789999999999999877665422 222234444444 33 3889999999999
Q ss_pred EEccCCCccceeeccCcccCeE-EEEEcCCCCEEEEEcCCCeEEEeec
Q psy6859 165 YDCKGNGTPLHVLDRLHTKPVV-LIKFNPIYQVVVSVDKAGILEYWSG 211 (261)
Q Consensus 165 ~d~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~ 211 (261)
||+. +++++.+++ +|...+. .++|+|||++|++|+.|++|+|||+
T Consensus 310 WDl~-tGk~l~tL~-gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 310 WDLL-LGQCTALLP-PVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EETT-TCSEEEEEC-CC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EECC-CCcEEEEec-CCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 9999 999999997 7877655 5899999999999999999999985
No 117
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=6.4e-31 Score=207.10 Aligned_cols=207 Identities=15% Similarity=0.245 Sum_probs=171.1
Q ss_pred CCCCCeEEEEEcC-CC-eEEEecCCCeEEEEeccCCc-----eeeeEEeeccccceeEEEEee-CCCEEEEEeCCCcEEE
Q psy6859 1 MHRSPITHVVVTK-TD-FVITASNDGHIKFWKKQEEG-----IEFVKHFRSHLGVIHSICTNY-NGTLLCTVASDKAMKV 72 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~-~l~s~~~d~~i~iw~~~~~~-----~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~~ 72 (261)
+|...|++++|+| +. +|++|+.||.|++|++.... ......+.+|...|.+++|+| ++.+|++++.||.|++
T Consensus 179 ~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i 258 (430)
T 2xyi_A 179 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMI 258 (430)
T ss_dssp CCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred CCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEE
Confidence 6899999999999 66 99999999999999998731 122566778999999999999 7789999999999999
Q ss_pred EEcccc---ceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCC-CceeeEEeecCCcceEEEEEEeCCC
Q psy6859 73 FDVINF---DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKG-NDMINMIKLDFTPLTVECIHYLGDA 148 (261)
Q Consensus 73 wd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (261)
||++++ +.+..+..+...+..+.+++++..+++. ++.|+.|++||+++ ..++..+.. +...+.+++|+|++
T Consensus 259 ~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~t---g~~dg~v~vwd~~~~~~~~~~~~~--h~~~v~~i~~sp~~ 333 (430)
T 2xyi_A 259 WDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT---GSADKTVALWDLRNLKLKLHSFES--HKDEIFQVQWSPHN 333 (430)
T ss_dssp EETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEE---EETTSEEEEEETTCTTSCSEEEEC--CSSCEEEEEECSSC
T ss_pred EECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEE---EeCCCeEEEEeCCCCCCCeEEeec--CCCCEEEEEECCCC
Confidence 999877 4666676777788888998888753322 48999999999998 456666665 45589999999998
Q ss_pred CceEEEEecCCCeEEEEEccCC-------------CccceeeccCcccCeEEEEEcCCCC-EEEEEcCCCeEEEeecccc
Q psy6859 149 IPTAAVSDQDSSHVHIYDCKGN-------------GTPLHVLDRLHTKPVVLIKFNPIYQ-VVVSVDKAGILEYWSGYKQ 214 (261)
Q Consensus 149 ~~~~~~~~~~d~~i~i~d~~~~-------------~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~ 214 (261)
.. ++++++.|+.|++||+... .+++..+. +|...|++++|+|+++ +|++++.||.|++|++...
T Consensus 334 ~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 334 ET-ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG-GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp TT-EEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECC-CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CC-EEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcC-CCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 75 3778888999999999821 24555665 8899999999999999 8999999999999998654
No 118
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-30 Score=200.25 Aligned_cols=200 Identities=15% Similarity=0.210 Sum_probs=173.2
Q ss_pred eeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeE
Q psy6859 37 EFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRV 116 (261)
Q Consensus 37 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i 116 (261)
.....+.+|.+.|++++|+|++++|++++.||.|++||+.+++.+..+..+...+..+.++++++.++++ +.|+.|
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~----~~dg~i 98 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTG----SADYSI 98 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE----ETTTEE
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEE----eCCCeE
Confidence 4556789999999999999999999999999999999999999999998888888899999988877766 899999
Q ss_pred EEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC-----CeEEEEEccCCCc-----------cceeeccC
Q psy6859 117 HIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS-----SHVHIYDCKGNGT-----------PLHVLDRL 180 (261)
Q Consensus 117 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----~~i~i~d~~~~~~-----------~~~~~~~~ 180 (261)
++||+++++.+..+. ....+.++.|+|++.. +++++.+ +.|++||+. ... .+..+. .
T Consensus 99 ~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~--l~~~~~~~~~~~g~i~~~d~~-~~~~~~~~~~~~~~~~~~~~-~ 171 (369)
T 3zwl_B 99 KLWDVSNGQCVATWK---SPVPVKRVEFSPCGNY--FLAILDNVMKNPGSINIYEIE-RDSATHELTKVSEEPIHKII-T 171 (369)
T ss_dssp EEEETTTCCEEEEEE---CSSCEEEEEECTTSSE--EEEEECCBTTBCCEEEEEEEE-ECTTTCCEEEECSSCSEEEE-C
T ss_pred EEEECCCCcEEEEee---cCCCeEEEEEccCCCE--EEEecCCccCCCCEEEEEEec-CCccceeecccccceeeecc-C
Confidence 999999999888877 4557899999999986 7777777 999999998 443 233333 4
Q ss_pred ccc--CeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEee
Q psy6859 181 HTK--PVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTIS 258 (261)
Q Consensus 181 ~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 258 (261)
|.. .+.+++|+|++++|++++.||.|++||+++. .+.+..+..|...|.+++|+|++++|++++
T Consensus 172 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 237 (369)
T 3zwl_B 172 HEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNN--------------YEYVDSIDLHEKSISDMQFSPDLTYFITSS 237 (369)
T ss_dssp CTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTT--------------TEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred CcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCC--------------cEeEEEEecCCCceeEEEECCCCCEEEEec
Confidence 555 8999999999999999999999999999531 466777888999999999999999999999
Q ss_pred cCC
Q psy6859 259 MDR 261 (261)
Q Consensus 259 ~Dg 261 (261)
.||
T Consensus 238 ~d~ 240 (369)
T 3zwl_B 238 RDT 240 (369)
T ss_dssp TTS
T ss_pred CCc
Confidence 886
No 119
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=2.5e-31 Score=207.06 Aligned_cols=202 Identities=9% Similarity=-0.036 Sum_probs=145.0
Q ss_pred CCCCCeEEEEEcC---------CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCC-CEEEEEeCCCcE
Q psy6859 1 MHRSPITHVVVTK---------TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNG-TLLCTVASDKAM 70 (261)
Q Consensus 1 gH~~~v~~~~~~~---------~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~v 70 (261)
||++.|++|+|+| +++||+|+.|++|+|||+.+. .+...+..|..+|.+++|+|++ ++|++++.|++|
T Consensus 134 gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~--~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v 211 (393)
T 4gq1_A 134 GHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE--GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNI 211 (393)
T ss_dssp SCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT--EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred CCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC--ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEE
Confidence 7999999999985 468999999999999999876 6666777789999999999976 489999999999
Q ss_pred EEEEccccceeeeee-------------------------ccCcceeEEEE-eecCCceeeeeeecCCCCeEEEEEcCCC
Q psy6859 71 KVFDVINFDMINMIK-------------------------LDFTPLTVECI-HYLGDAIPTAAVSDQDSSRVHIYDCKGN 124 (261)
Q Consensus 71 ~~wd~~~~~~~~~~~-------------------------~~~~~~~~~~~-~~~~~~~~~~~~s~~~d~~i~i~d~~~~ 124 (261)
++||+.+++...... .+......+.+ .+++..+++. +.|+++++||+..+
T Consensus 212 ~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~----s~d~~i~vwd~~~~ 287 (393)
T 4gq1_A 212 RIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAM----CKSGAWLRWNLFAN 287 (393)
T ss_dssp EEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEE----CTTSEEEEEEC---
T ss_pred EEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEE----eCCCCEEEEECccC
Confidence 999998776443321 11122233333 3667777666 89999999999877
Q ss_pred ceeeEEeecCC----------------cceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEE
Q psy6859 125 DMINMIKLDFT----------------PLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLI 188 (261)
Q Consensus 125 ~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~ 188 (261)
+....+..+.. ........+.|.....++++|+.|+.|++||+. +++++..+. .|..+|.++
T Consensus 288 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~-~~~~~~~~~-~~~~~V~sv 365 (393)
T 4gq1_A 288 NDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTY-EKDSNSIPI-QLGMPIVDF 365 (393)
T ss_dssp ----------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETT-CTTCCEEEE-ECSSCEEEE
T ss_pred CCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECC-CCcEEEEec-CCCCcEEEE
Confidence 65444422110 011122344554444568899999999999998 787777776 889999999
Q ss_pred EEcCCCCEEEEEcCCCeEEEeec
Q psy6859 189 KFNPIYQVVVSVDKAGILEYWSG 211 (261)
Q Consensus 189 ~~~~~~~~l~~~~~dg~i~iwd~ 211 (261)
+|+|||++||+++.+| +.+|.+
T Consensus 366 afspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 366 CWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp EECTTSSEEEEEESSE-EEEEEE
T ss_pred EEcCCCCEEEEEeCCC-eEEEEE
Confidence 9999999999999776 677766
No 120
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=2.2e-29 Score=195.98 Aligned_cols=228 Identities=12% Similarity=0.158 Sum_probs=183.2
Q ss_pred CCeEEEEEcC-CCeE-EEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEE-eCCCcEEEEEccccce
Q psy6859 4 SPITHVVVTK-TDFV-ITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTV-ASDKAMKVFDVINFDM 80 (261)
Q Consensus 4 ~~v~~~~~~~-~~~l-~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~v~~wd~~~~~~ 80 (261)
..+.+++|+| ++++ ++++.|+.|++||+.++ +.+..+..+. .+.+++|+|++++|+.+ +.++.|++||+.+++.
T Consensus 32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~--~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~ 108 (391)
T 1l0q_A 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATN--NVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV 108 (391)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT--EEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred CCcceEEECCCCCEEEEECCCCCeEEEEECCCC--eEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeE
Confidence 4689999999 7765 77889999999999887 6777777554 89999999999987654 4679999999999988
Q ss_pred eeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCC
Q psy6859 81 INMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS 160 (261)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 160 (261)
+..+..+. ....+.++++++.++.. ++.++.|++||+++++.+..+..+. .+..+.|+|++.. ++++++.++
T Consensus 109 ~~~~~~~~-~~~~~~~s~dg~~l~~~---~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~~~dg~~-l~~~~~~~~ 180 (391)
T 1l0q_A 109 AGTVKTGK-SPLGLALSPDGKKLYVT---NNGDKTVSVINTVTKAVINTVSVGR---SPKGIAVTPDGTK-VYVANFDSM 180 (391)
T ss_dssp EEEEECSS-SEEEEEECTTSSEEEEE---ETTTTEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSE-EEEEETTTT
T ss_pred EEEEeCCC-CcceEEECCCCCEEEEE---eCCCCEEEEEECCCCcEEEEEecCC---CcceEEECCCCCE-EEEEeCCCC
Confidence 88777554 35677788888766332 3789999999999998888777543 4589999999975 356778899
Q ss_pred eEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEc---CCCeEEEeecccccccCCeeeeeecccccceeecCC
Q psy6859 161 HVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVD---KAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK 237 (261)
Q Consensus 161 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (261)
.|++||++ +++.+..+. +...+.+++|+|++++|++++ .++.|++||+.+ ++.+..+..
T Consensus 181 ~v~~~d~~-~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~---------------~~~~~~~~~ 242 (391)
T 1l0q_A 181 SISVIDTV-TNSVIDTVK--VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT---------------NKITARIPV 242 (391)
T ss_dssp EEEEEETT-TTEEEEEEE--CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT---------------TEEEEEEEC
T ss_pred EEEEEECC-CCeEEEEEe--cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCC---------------CeEEEEEec
Confidence 99999998 888887774 667889999999999988887 689999999954 455666665
Q ss_pred CccceeeeeECCCCceE-EEeecCC
Q psy6859 238 NKTYPSGLSFSPDGNKF-VTISMDR 261 (261)
Q Consensus 238 ~~~~v~~~~~s~~~~~l-~s~~~Dg 261 (261)
|. .+.+++|+|+|++| ++++.|+
T Consensus 243 ~~-~~~~~~~s~dg~~l~~s~~~d~ 266 (391)
T 1l0q_A 243 GP-DPAGIAVTPDGKKVYVALSFXN 266 (391)
T ss_dssp CS-SEEEEEECTTSSEEEEEETTTT
T ss_pred CC-CccEEEEccCCCEEEEEcCCCC
Confidence 54 47899999999988 5556554
No 121
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.8e-30 Score=191.94 Aligned_cols=194 Identities=18% Similarity=0.232 Sum_probs=167.0
Q ss_pred CCCCCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEee-CCCEEEEEeCCCcEEEEEccccc
Q psy6859 1 MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNY-NGTLLCTVASDKAMKVFDVINFD 79 (261)
Q Consensus 1 gH~~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~~wd~~~~~ 79 (261)
+|...|.+++|. ++++++++.|+.|++|| .. +....+..|...+.++.|.| +++++++++.|+.|++|| ..+
T Consensus 102 ~~~~~i~~~~~~-~~~l~~~~~d~~i~~~d--~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~ 174 (313)
T 3odt_A 102 GHQGNVCSLSFQ-DGVVISGSWDKTAKVWK--EG--SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDK 174 (313)
T ss_dssp CCSSCEEEEEEE-TTEEEEEETTSEEEEEE--TT--EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTE
T ss_pred hcccCEEEEEec-CCEEEEEeCCCCEEEEc--CC--cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCc
Confidence 589999999994 66899999999999999 33 67788889999999999998 899999999999999999 445
Q ss_pred eeeeeec-cCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecC
Q psy6859 80 MINMIKL-DFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD 158 (261)
Q Consensus 80 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (261)
....+.. +...+..+.+.+++. +++. +.|+.|++||+++++.+..+.. +...+.+++|+|++. +++++.
T Consensus 175 ~~~~~~~~~~~~i~~~~~~~~~~-~~~~----~~dg~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~---l~~~~~ 244 (313)
T 3odt_A 175 VIKTFSGIHNDVVRHLAVVDDGH-FISC----SNDGLIKLVDMHTGDVLRTYEG--HESFVYCIKLLPNGD---IVSCGE 244 (313)
T ss_dssp EEEEECSSCSSCEEEEEEEETTE-EEEE----ETTSEEEEEETTTCCEEEEEEC--CSSCEEEEEECTTSC---EEEEET
T ss_pred eEEEEeccCcccEEEEEEcCCCe-EEEc----cCCCeEEEEECCchhhhhhhhc--CCceEEEEEEecCCC---EEEEec
Confidence 5555554 666778888888776 5444 8999999999999988888875 445799999999994 788889
Q ss_pred CCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccc
Q psy6859 159 SSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQ 214 (261)
Q Consensus 159 d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 214 (261)
|+.|++||++ +++++..+. .|...|.+++|+|+++ +++++.||.|++||++++
T Consensus 245 dg~v~iwd~~-~~~~~~~~~-~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 245 DRTVRIWSKE-NGSLKQVIT-LPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp TSEEEEECTT-TCCEEEEEE-CSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGG
T ss_pred CCEEEEEECC-CCceeEEEe-ccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCC
Confidence 9999999999 888999997 8999999999999998 556888999999999653
No 122
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=7.8e-31 Score=202.13 Aligned_cols=204 Identities=17% Similarity=0.121 Sum_probs=161.5
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEE--eeCCCEEEEEeCCCcEEEEEccc
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICT--NYNGTLLCTVASDKAMKVFDVIN 77 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~s~~~dg~v~~wd~~~ 77 (261)
+|..+|++++|+| +++|++++.||.|++||+.+. +... +..|...|.+++| ++++++|++++.||.|++||+.+
T Consensus 84 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~--~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 160 (368)
T 3mmy_A 84 MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSN--QAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS 160 (368)
T ss_dssp ECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT--EEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSC
T ss_pred cccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCC--Ccee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCC
Confidence 5899999999999 899999999999999999986 4444 5669999999999 88999999999999999999998
Q ss_pred cceeeeeeccCc-----------------------------------------ceeEEEEeecCCceeeeeeecCCCCeE
Q psy6859 78 FDMINMIKLDFT-----------------------------------------PLTVECIHYLGDAIPTAAVSDQDSSRV 116 (261)
Q Consensus 78 ~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~~~s~~~d~~i 116 (261)
++.+..+..+.. ...+..+.+....-....++++.|+.|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i 240 (368)
T 3mmy_A 161 SNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV 240 (368)
T ss_dssp SSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEE
T ss_pred CcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcE
Confidence 887766654321 112222222222211113455899999
Q ss_pred EEEEcCCC---ceeeEEeecCCc----------ceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCccc
Q psy6859 117 HIYDCKGN---DMINMIKLDFTP----------LTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTK 183 (261)
Q Consensus 117 ~i~d~~~~---~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 183 (261)
++||++.. ..+..+..+... ..+.+++|+|++.+ +++++.||.|++||++ +++++..+. .|..
T Consensus 241 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~--l~s~~~dg~i~iwd~~-~~~~~~~~~-~~~~ 316 (368)
T 3mmy_A 241 AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGT--LATVGSDGRFSFWDKD-ARTKLKTSE-QLDQ 316 (368)
T ss_dssp EEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCC--EEEEETTSCEEEEETT-TTEEEEECC-CCSS
T ss_pred EEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCE--EEEEccCCeEEEEECC-CCcEEEEec-CCCC
Confidence 99999987 344455443211 15999999999976 8899999999999999 889999998 8999
Q ss_pred CeEEEEEcCCCCEEEEEcCCCeEEEeec
Q psy6859 184 PVVLIKFNPIYQVVVSVDKAGILEYWSG 211 (261)
Q Consensus 184 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 211 (261)
+|++++|+|++++|++++.|+..+.|++
T Consensus 317 ~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 317 PISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp CEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred CceEEEECCCCCeEEEEecccccccccc
Confidence 9999999999999999999886666654
No 123
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=3.8e-31 Score=206.65 Aligned_cols=229 Identities=14% Similarity=0.164 Sum_probs=177.8
Q ss_pred CCCeEEEEeccCCceeeeEEeeccccceeEEEEee-CCCEEEEEeCCCcEEEEEccccceeeeee-------------cc
Q psy6859 22 NDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNY-NGTLLCTVASDKAMKVFDVINFDMINMIK-------------LD 87 (261)
Q Consensus 22 ~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~~wd~~~~~~~~~~~-------------~~ 87 (261)
.++.+++|+++.. +....+.+|.+.|++++|+| ++++|++++.||.|++||+.+++....+. .+
T Consensus 21 ~~~~~~v~~~~~~--~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
T 4a11_B 21 AESTRRVLGLELN--KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVH 98 (408)
T ss_dssp HHHHHHHHTEEEC--TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCC
T ss_pred ccCcceeeccccC--cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccC
Confidence 3456778888766 56677888999999999999 99999999999999999999877655543 25
Q ss_pred CcceeEEEEee-cCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCC-ceEEEEecCCCeEEEE
Q psy6859 88 FTPLTVECIHY-LGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAI-PTAAVSDQDSSHVHIY 165 (261)
Q Consensus 88 ~~~~~~~~~~~-~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~i~ 165 (261)
..++..+.+.+ ++..++++ +.|+.|++||+++++....+.. +..+.++.+.+... ..++++++.++.|++|
T Consensus 99 ~~~v~~~~~~~~~~~~l~s~----~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 171 (408)
T 4a11_B 99 RYSVETVQWYPHDTGMFTSS----SFDKTLKVWDTNTLQTADVFNF---EETVYSHHMSPVSTKHCLVAVGTRGPKVQLC 171 (408)
T ss_dssp SSCEEEEEECTTCTTCEEEE----ETTSEEEEEETTTTEEEEEEEC---SSCEEEEEECSSCSSCCEEEEEESSSSEEEE
T ss_pred CCcEEEEEEccCCCcEEEEE----eCCCeEEEeeCCCCccceeccC---CCceeeeEeecCCCCCcEEEEEcCCCeEEEE
Confidence 56677788887 55556555 8899999999999988887763 34678888887542 1238888899999999
Q ss_pred EccCCCccceeeccCcccCeEEEEEcCCCC-EEEEEcCCCeEEEeecccccccCCeeee-eecccccceeecCCCcccee
Q psy6859 166 DCKGNGTPLHVLDRLHTKPVVLIKFNPIYQ-VVVSVDKAGILEYWSGYKQEFKFPKCVH-FESKLDTDLFEFAKNKTYPS 243 (261)
Q Consensus 166 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~ 243 (261)
|++ +++.+..+. .|...|++++|+|+++ +|++++.||.|++||++........... ..............|...|.
T Consensus 172 d~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 249 (408)
T 4a11_B 172 DLK-SGSCSHILQ-GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVN 249 (408)
T ss_dssp ESS-SSCCCEEEC-CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEE
T ss_pred eCC-Ccceeeeec-CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCcee
Confidence 999 888899997 8999999999999999 5899999999999999754211000000 00011122233367899999
Q ss_pred eeeECCCCceEEEeecCC
Q psy6859 244 GLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 244 ~~~~s~~~~~l~s~~~Dg 261 (261)
+++|+|++++|++++.||
T Consensus 250 ~~~~~~~~~~l~~~~~dg 267 (408)
T 4a11_B 250 GLCFTSDGLHLLTVGTDN 267 (408)
T ss_dssp EEEECTTSSEEEEEETTS
T ss_pred EEEEcCCCCEEEEecCCC
Confidence 999999999999999886
No 124
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2.2e-29 Score=190.47 Aligned_cols=224 Identities=13% Similarity=0.175 Sum_probs=173.7
Q ss_pred eEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeee
Q psy6859 6 ITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIK 85 (261)
Q Consensus 6 v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~ 85 (261)
+++|+||++++||+| .|++|+|||++++.......+.+|...|++++|+|++++|++|+.||+|++||+.+++.+..+.
T Consensus 28 ~~~l~WS~~~~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~ 106 (318)
T 4ggc_A 28 LNLVDWSSGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT 106 (318)
T ss_dssp CBCEEECTTSEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred ceEEEECCCCEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEec
Confidence 467999996677766 5999999999987333333445788889999999999999999999999999999999998887
Q ss_pred ccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCce-eeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEE
Q psy6859 86 LDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDM-INMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHI 164 (261)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i 164 (261)
.+... ...+...+..+++. +.++.+.+|+...... +..+.. +...+..+.+.+++.. +++++.|+.|++
T Consensus 107 ~h~~~--~~~~~~~~~~l~s~----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--l~s~~~d~~i~i 176 (318)
T 4ggc_A 107 SHSAR--VGSLSWNSYILSSG----SRSGHIHHHDVRVAEHHVATLSG--HSQEVCGLRWAPDGRH--LASGGNDNLVNV 176 (318)
T ss_dssp CCSSC--EEEEEEETTEEEEE----ETTSEEEEEETTSSSCEEEEEEC--CSSCEEEEEECTTSSE--EEEEETTSCEEE
T ss_pred Cccce--EEEeecCCCEEEEE----ecCCceEeeecCCCceeEEEEcC--ccCceEEEEEcCCCCE--EEEEecCcceeE
Confidence 66544 44556666665555 8999999999887643 344443 4557889999999975 889999999999
Q ss_pred EEccCCCcc----ceeeccCcccCeEEEEEcCCCCE---EEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCC
Q psy6859 165 YDCKGNGTP----LHVLDRLHTKPVVLIKFNPIYQV---VVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK 237 (261)
Q Consensus 165 ~d~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~---l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (261)
||++ +++. ..... .+...|..+.++|++.. +++++.++.|++||.+. ..... ...
T Consensus 177 wd~~-~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~---------------~~~~~-~~~ 238 (318)
T 4ggc_A 177 WPSA-PGEGGWVPLQTFT-QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS---------------GACLS-AVD 238 (318)
T ss_dssp EESS-CBTTBSCCSEEEC-CCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTT---------------CCEEE-EEE
T ss_pred EECC-CCcccccceeeec-ccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccc---------------ccccc-ccc
Confidence 9998 6543 23333 67889999999998763 35678899999999854 22222 234
Q ss_pred CccceeeeeECCCCceEEEee
Q psy6859 238 NKTYPSGLSFSPDGNKFVTIS 258 (261)
Q Consensus 238 ~~~~v~~~~~s~~~~~l~s~~ 258 (261)
+...+..+.|+|+++.+++++
T Consensus 239 ~~~~v~~~~~~~~~~~~~~~s 259 (318)
T 4ggc_A 239 AHSQVCSILWSPHYKELISGH 259 (318)
T ss_dssp CSSCEEEEEEETTTTEEEEEE
T ss_pred ceeeeeeeeecccccceEEEE
Confidence 667899999999999888765
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=2.1e-29 Score=198.60 Aligned_cols=227 Identities=14% Similarity=0.097 Sum_probs=185.4
Q ss_pred CCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeE-----EeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccc
Q psy6859 4 SPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVK-----HFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVIN 77 (261)
Q Consensus 4 ~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~ 77 (261)
..+.+++|+| +.++++++.|+.|++||+.++ +... .+.+|.+.|.+++|+++++++++++.|+.|++||+.+
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~ 200 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSG--QTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKT 200 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTC--CEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTT
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCC--eEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCC
Confidence 3466899999 778888889999999999876 4444 3457888999999999999999999999999999999
Q ss_pred cceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEec
Q psy6859 78 FDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ 157 (261)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (261)
++.+..+..+......+.++++++.+++. ++.++.|++||+++++.+..+... ..+.+++++|++.. +++++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~g~~--l~~~~ 272 (433)
T 3bws_A 201 LAYKATVDLTGKWSKILLYDPIRDLVYCS---NWISEDISVIDRKTKLEIRKTDKI---GLPRGLLLSKDGKE--LYIAQ 272 (433)
T ss_dssp CCEEEEEECSSSSEEEEEEETTTTEEEEE---ETTTTEEEEEETTTTEEEEECCCC---SEEEEEEECTTSSE--EEEEE
T ss_pred ceEEEEEcCCCCCeeEEEEcCCCCEEEEE---ecCCCcEEEEECCCCcEEEEecCC---CCceEEEEcCCCCE--EEEEE
Confidence 99888887777777888888888866543 367999999999998877766543 35899999999986 44444
Q ss_pred --------CCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEE-EEEcCCCeEEEeecccccccCCeeeeeeccc
Q psy6859 158 --------DSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVV-VSVDKAGILEYWSGYKQEFKFPKCVHFESKL 228 (261)
Q Consensus 158 --------~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 228 (261)
.|+.|++||++ +++.+..+ .+...+.+++|+|+++.+ ++++.|+.|++||+.+
T Consensus 273 ~~~~~~~~~dg~i~~~d~~-~~~~~~~~--~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~--------------- 334 (433)
T 3bws_A 273 FSASNQESGGGRLGIYSMD-KEKLIDTI--GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKE--------------- 334 (433)
T ss_dssp EESCTTCSCCEEEEEEETT-TTEEEEEE--EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTT---------------
T ss_pred CCCCccccCCCeEEEEECC-CCcEEeec--cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCC---------------
Confidence 48899999998 78777777 467789999999999755 6678999999999854
Q ss_pred ccceeecCCCccceeeeeECCCCceEEEeec
Q psy6859 229 DTDLFEFAKNKTYPSGLSFSPDGNKFVTISM 259 (261)
Q Consensus 229 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 259 (261)
++.+..+. +...+.+++|+|+|++|++++.
T Consensus 335 ~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~ 364 (433)
T 3bws_A 335 KKVQKSIP-VFDKPNTIALSPDGKYLYVSCR 364 (433)
T ss_dssp TEEEEEEE-CSSSEEEEEECTTSSEEEEEEC
T ss_pred CcEEEEec-CCCCCCeEEEcCCCCEEEEEec
Confidence 44444444 5677899999999999988876
No 126
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=7.7e-28 Score=187.25 Aligned_cols=214 Identities=13% Similarity=0.126 Sum_probs=175.6
Q ss_pred eEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEE-EEEeCCCcEEEEEccccceeeeeeccCcceeEE
Q psy6859 16 FVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLL-CTVASDKAMKVFDVINFDMINMIKLDFTPLTVE 94 (261)
Q Consensus 16 ~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~ 94 (261)
++++++.|+.|++||+.++ +.+..+..|. .+.+++|+|+++++ ++++.|+.|++||+.+++.+..+..+. ....+
T Consensus 4 l~vs~~~d~~v~v~d~~~~--~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSN--KVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEETTTTEEEEEETTTT--EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred EEEEcCCCCEEEEEECCCC--eEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence 5788999999999999987 7777887664 58999999999977 677789999999999999988887665 56778
Q ss_pred EEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccc
Q psy6859 95 CIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPL 174 (261)
Q Consensus 95 ~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~ 174 (261)
.++++++.++.. ++.++.|++||+.+++.+..+..+ ..+.+++|+|++.. ++++++.++.|++||+. +++.+
T Consensus 80 ~~spdg~~l~~~---~~~~~~v~v~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~-l~~~~~~~~~v~~~d~~-~~~~~ 151 (391)
T 1l0q_A 80 AVSPDGKQVYVT---NMASSTLSVIDTTSNTVAGTVKTG---KSPLGLALSPDGKK-LYVTNNGDKTVSVINTV-TKAVI 151 (391)
T ss_dssp EECTTSSEEEEE---ETTTTEEEEEETTTTEEEEEEECS---SSEEEEEECTTSSE-EEEEETTTTEEEEEETT-TTEEE
T ss_pred EECCCCCEEEEE---ECCCCEEEEEECCCCeEEEEEeCC---CCcceEEECCCCCE-EEEEeCCCCEEEEEECC-CCcEE
Confidence 888888866544 367899999999999888777643 35789999999975 35788889999999998 88888
Q ss_pred eeeccCcccCeEEEEEcCCCCEE-EEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCce
Q psy6859 175 HVLDRLHTKPVVLIKFNPIYQVV-VSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNK 253 (261)
Q Consensus 175 ~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 253 (261)
..+. . ...+..++|+|++++| ++++.++.|++||+++ ++.+..+. +...+.+++|+|+|++
T Consensus 152 ~~~~-~-~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~---------------~~~~~~~~-~~~~~~~~~~~~~g~~ 213 (391)
T 1l0q_A 152 NTVS-V-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVT---------------NSVIDTVK-VEAAPSGIAVNPEGTK 213 (391)
T ss_dssp EEEE-C-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTT---------------TEEEEEEE-CSSEEEEEEECTTSSE
T ss_pred EEEe-c-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCC---------------CeEEEEEe-cCCCccceEECCCCCE
Confidence 8885 3 4567999999999977 6778899999999954 34444443 4567899999999999
Q ss_pred EEEeec
Q psy6859 254 FVTISM 259 (261)
Q Consensus 254 l~s~~~ 259 (261)
|++++.
T Consensus 214 l~~~~~ 219 (391)
T 1l0q_A 214 AYVTNV 219 (391)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 998873
No 127
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.96 E-value=1e-26 Score=173.88 Aligned_cols=233 Identities=10% Similarity=0.038 Sum_probs=169.6
Q ss_pred CCCCeEEEEEcC-CCeEEEecCCCeEEEEeccC-CceeeeEEeecc-ccceeEEEEeeCCCEEEEEe--CCCcEEEEEc-
Q psy6859 2 HRSPITHVVVTK-TDFVITASNDGHIKFWKKQE-EGIEFVKHFRSH-LGVIHSICTNYNGTLLCTVA--SDKAMKVFDV- 75 (261)
Q Consensus 2 H~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~-~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~--~dg~v~~wd~- 75 (261)
|...|.+++|+| +++|++++ ++.|.+|++.+ . +.......+ ...+.+++|+|++++|++++ .++...||.+
T Consensus 40 ~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~ 116 (297)
T 2ojh_A 40 TPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDP--SPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLP 116 (297)
T ss_dssp ESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCC--SCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEE
T ss_pred CCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCC--CceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEE
Confidence 678899999999 88888876 78999999988 6 444455555 36789999999999999998 3345555554
Q ss_pred -cccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcC--CCceeeEEeecCCcceEEEEEEeCCCCceE
Q psy6859 76 -INFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCK--GNDMINMIKLDFTPLTVECIHYLGDAIPTA 152 (261)
Q Consensus 76 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (261)
.+++ ...+.... ......++++++.++.. +..++.+.+|+++ +++. ..+ ......+.++.|+|++.. +
T Consensus 117 ~~~~~-~~~~~~~~-~~~~~~~spdg~~l~~~---~~~~~~~~l~~~~~~~~~~-~~~--~~~~~~~~~~~~s~dg~~-l 187 (297)
T 2ojh_A 117 STGGT-PRLMTKNL-PSYWHGWSPDGKSFTYC---GIRDQVFDIYSMDIDSGVE-TRL--THGEGRNDGPDYSPDGRW-I 187 (297)
T ss_dssp TTCCC-CEECCSSS-SEEEEEECTTSSEEEEE---EEETTEEEEEEEETTTCCE-EEC--CCSSSCEEEEEECTTSSE-E
T ss_pred CCCCc-eEEeecCC-CccceEECCCCCEEEEE---ECCCCceEEEEEECCCCcc-eEc--ccCCCccccceECCCCCE-E
Confidence 4443 33333222 35566788888876633 2578889999854 3433 222 224457899999999985 3
Q ss_pred EEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCC-----------CeEEEeecccccccCCee
Q psy6859 153 AVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKA-----------GILEYWSGYKQEFKFPKC 221 (261)
Q Consensus 153 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~ 221 (261)
++++..++.+++|++...+..+..+. .+...+..++|+|++++|++++.+ +.|.+||+.++
T Consensus 188 ~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~------- 259 (297)
T 2ojh_A 188 YFNSSRTGQMQIWRVRVDGSSVERIT-DSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGG------- 259 (297)
T ss_dssp EEEECTTSSCEEEEEETTSSCEEECC-CCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSC-------
T ss_pred EEEecCCCCccEEEECCCCCCcEEEe-cCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCC-------
Confidence 44555688999999874455667776 778889999999999999887765 56999998642
Q ss_pred eeeecccccceeecCCCccceeeeeECCCCceEEEeecC
Q psy6859 222 VHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMD 260 (261)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~D 260 (261)
....+..+.+|...+..++|+|+|++|++++.|
T Consensus 260 ------~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 260 ------NVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp ------SCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred ------CceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence 122344455678899999999999999988876
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=3.9e-26 Score=178.80 Aligned_cols=221 Identities=10% Similarity=0.016 Sum_probs=167.9
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCC---eEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEE-EEeCCCc--EEEE
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDG---HIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLC-TVASDKA--MKVF 73 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~---~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~--v~~w 73 (261)
+|...|.+++|+| +++|++++.++ .|++||+.++ +.. .+..|...+.+++|+|||++|+ +++.++. |++|
T Consensus 176 ~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg--~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~ 252 (415)
T 2hqs_A 176 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG--AVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM 252 (415)
T ss_dssp EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC--CEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred CCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC--cEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEE
Confidence 4778999999999 89999998885 9999999886 333 4666888999999999999888 6666654 9999
Q ss_pred EccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCC--eEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCce
Q psy6859 74 DVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS--RVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPT 151 (261)
Q Consensus 74 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (261)
|+.+++.. .+..+........++++++.++.. +..++ .|.+||+.+++.. .+.. +...+..+.|+|++.++
T Consensus 253 d~~~~~~~-~l~~~~~~~~~~~~spdg~~l~~~---s~~~g~~~i~~~d~~~~~~~-~l~~--~~~~~~~~~~spdG~~l 325 (415)
T 2hqs_A 253 DLASGQIR-QVTDGRSNNTEPTWFPDSQNLAFT---SDQAGRPQVYKVNINGGAPQ-RITW--EGSQNQDADVSSDGKFM 325 (415)
T ss_dssp ETTTCCEE-ECCCCSSCEEEEEECTTSSEEEEE---ECTTSSCEEEEEETTSSCCE-ECCC--SSSEEEEEEECTTSSEE
T ss_pred ECCCCCEE-eCcCCCCcccceEECCCCCEEEEE---ECCCCCcEEEEEECCCCCEE-EEec--CCCcccCeEECCCCCEE
Confidence 99887653 444445556778888999877665 12344 7888899887643 2222 34477899999999863
Q ss_pred EEEEecC--CCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCC---eEEEeecccccccCCeeeeeec
Q psy6859 152 AAVSDQD--SSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAG---ILEYWSGYKQEFKFPKCVHFES 226 (261)
Q Consensus 152 ~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~ 226 (261)
++++.. +..|++||+. +++. ..+. .+. .+.+++|+|+|++|++++.++ .|.+||+.
T Consensus 326 -~~~~~~~g~~~i~~~d~~-~~~~-~~l~-~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-------------- 386 (415)
T 2hqs_A 326 -VMVSSNGGQQHIAKQDLA-TGGV-QVLS-STF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-------------- 386 (415)
T ss_dssp -EEEEECSSCEEEEEEETT-TCCE-EECC-CSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT--------------
T ss_pred -EEEECcCCceEEEEEECC-CCCE-EEec-CCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC--------------
Confidence 233333 3589999998 6655 4454 444 899999999999998888776 79999974
Q ss_pred ccccceeecCCCccceeeeeECCCCc
Q psy6859 227 KLDTDLFEFAKNKTYPSGLSFSPDGN 252 (261)
Q Consensus 227 ~~~~~~~~~~~~~~~v~~~~~s~~~~ 252 (261)
++....+..|.+.|.+++|+|...
T Consensus 387 --g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 387 --GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp --SCCEEECCCSSSEEEEEEECCCCC
T ss_pred --CCcEEEeeCCCCCCcCCccccccc
Confidence 456778888999999999999754
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=1e-26 Score=182.12 Aligned_cols=216 Identities=8% Similarity=-0.034 Sum_probs=160.4
Q ss_pred CCeEEEecCC------CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCC---cEEEEEccccceeeee
Q psy6859 14 TDFVITASND------GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDK---AMKVFDVINFDMINMI 84 (261)
Q Consensus 14 ~~~l~s~~~d------~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg---~v~~wd~~~~~~~~~~ 84 (261)
+..++.++.+ +.|++||++.. ....+.+|...+.+++|+||+++|++++.++ .|++||+.+++... +
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~---~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-l 218 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGY---NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-V 218 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSC---SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-E
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCC---CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE-e
Confidence 4566666554 79999999753 4566777899999999999999999999875 99999999887654 3
Q ss_pred eccCcceeEEEEeecCCceeeeeeecCCC--CeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEec-CCC-
Q psy6859 85 KLDFTPLTVECIHYLGDAIPTAAVSDQDS--SRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ-DSS- 160 (261)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~- 160 (261)
..+........++|+++.++.. ++.+ ..|.+||+++++.. .+. .+...+.++.|+|++.. ++.++ .++
T Consensus 219 ~~~~~~~~~~~~spdg~~la~~---~~~~g~~~i~~~d~~~~~~~-~l~--~~~~~~~~~~~spdg~~--l~~~s~~~g~ 290 (415)
T 2hqs_A 219 ASFPRHNGAPAFSPDGSKLAFA---LSKTGSLNLYVMDLASGQIR-QVT--DGRSNNTEPTWFPDSQN--LAFTSDQAGR 290 (415)
T ss_dssp ECCSSCEEEEEECTTSSEEEEE---ECTTSSCEEEEEETTTCCEE-ECC--CCSSCEEEEEECTTSSE--EEEEECTTSS
T ss_pred ecCCCcccCEEEcCCCCEEEEE---EecCCCceEEEEECCCCCEE-eCc--CCCCcccceEECCCCCE--EEEEECCCCC
Confidence 3344556778889999877633 2444 45999999988653 332 24457889999999986 33333 344
Q ss_pred -eEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCC---CeEEEeecccccccCCeeeeeecccccceeecC
Q psy6859 161 -HVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKA---GILEYWSGYKQEFKFPKCVHFESKLDTDLFEFA 236 (261)
Q Consensus 161 -~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (261)
.|++||+. +++ ...+. .+...+.+++|+|+|++|++++.+ ..|.+||+.+ ++. ..+.
T Consensus 291 ~~i~~~d~~-~~~-~~~l~-~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~---------------~~~-~~l~ 351 (415)
T 2hqs_A 291 PQVYKVNIN-GGA-PQRIT-WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT---------------GGV-QVLS 351 (415)
T ss_dssp CEEEEEETT-SSC-CEECC-CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT---------------CCE-EECC
T ss_pred cEEEEEECC-CCC-EEEEe-cCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCC---------------CCE-EEec
Confidence 67778887 554 34454 567788999999999999887754 5899999854 333 3445
Q ss_pred CCccceeeeeECCCCceEEEeecCC
Q psy6859 237 KNKTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 237 ~~~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
.+. .+.+++|+|||++|++++.|+
T Consensus 352 ~~~-~~~~~~~spdg~~l~~~s~~~ 375 (415)
T 2hqs_A 352 STF-LDETPSLAPNGTMVIYSSSQG 375 (415)
T ss_dssp CSS-SCEEEEECTTSSEEEEEEEET
T ss_pred CCC-CcCCeEEcCCCCEEEEEEcCC
Confidence 554 889999999999999888653
No 130
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.95 E-value=1.4e-24 Score=165.76 Aligned_cols=240 Identities=10% Similarity=0.113 Sum_probs=165.3
Q ss_pred CCCCeEEEEEcC-CCeEEEecCC-CeEEEEecc--CCceeeeEEeeccccceeEEEEeeCCCEEEEEeC-CCcEEEEEcc
Q psy6859 2 HRSPITHVVVTK-TDFVITASND-GHIKFWKKQ--EEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVAS-DKAMKVFDVI 76 (261)
Q Consensus 2 H~~~v~~~~~~~-~~~l~s~~~d-~~i~iw~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~v~~wd~~ 76 (261)
|...+.+++|+| +++|++++.+ +.|.+|+++ ++..+.+..+..+. .+..++|+|+++++++++. ++.|.+||+.
T Consensus 36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~ 114 (343)
T 1ri6_A 36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLE 114 (343)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECC
Confidence 456788999999 8878877776 999999997 44445555665444 7899999999998877664 8899999994
Q ss_pred ---ccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCC-CceeeEE--eecC-CcceEEEEEEeCCCC
Q psy6859 77 ---NFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKG-NDMINMI--KLDF-TPLTVECIHYLGDAI 149 (261)
Q Consensus 77 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~-~~~~~~~--~~~~-~~~~~~~~~~~~~~~ 149 (261)
..+....+.... ....+.++++++.+++. ...++.|.+||+.+ ++..... .... ....+..+.|+|++.
T Consensus 115 ~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~---~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~ 190 (343)
T 1ri6_A 115 DGLPVGVVDVVEGLD-GCHSANISPDNRTLWVP---ALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQ 190 (343)
T ss_dssp TTEEEEEEEEECCCT-TBCCCEECTTSSEEEEE---EGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSS
T ss_pred CCccccccccccCCC-CceEEEECCCCCEEEEe---cCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCC
Confidence 444444444333 35567788888876654 23789999999987 5443322 1111 223677899999998
Q ss_pred ceEEEEecCCCeEEEEEccC-CCcc--ceeec---cC--cccCeEEEEEcCCCCEEE-EEcCCCeEEEeecccccccCCe
Q psy6859 150 PTAAVSDQDSSHVHIYDCKG-NGTP--LHVLD---RL--HTKPVVLIKFNPIYQVVV-SVDKAGILEYWSGYKQEFKFPK 220 (261)
Q Consensus 150 ~~~~~~~~~d~~i~i~d~~~-~~~~--~~~~~---~~--~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~ 220 (261)
+ +++++..++.|.+||+.. +++. ...+. .. ....+..++|+|++++|+ +...++.|.+||+....
T Consensus 191 ~-l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~----- 264 (343)
T 1ri6_A 191 Y-AYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDG----- 264 (343)
T ss_dssp E-EEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS-----
T ss_pred E-EEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCC-----
Confidence 5 355666789999999962 2322 22221 01 134577899999999776 55589999999986210
Q ss_pred eeeeecccccceeecCCCccceeeeeECCCCceEEEeec
Q psy6859 221 CVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISM 259 (261)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 259 (261)
...+.+..+..+.. +..++|+|+|++|++++.
T Consensus 265 ------~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~ 296 (343)
T 1ri6_A 265 ------SVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQ 296 (343)
T ss_dssp ------CCEEEEEEEECSSS-CCCEEECTTSSEEEEECT
T ss_pred ------CceEEeeeecCCCc-cceEEECCCCCEEEEecC
Confidence 11233444444444 889999999998888774
No 131
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.94 E-value=3.9e-24 Score=163.82 Aligned_cols=238 Identities=11% Similarity=0.132 Sum_probs=163.7
Q ss_pred CCeEEEEEcC-CCeEEEecC---CCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEe-CCCcEEEEEcc-c
Q psy6859 4 SPITHVVVTK-TDFVITASN---DGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVA-SDKAMKVFDVI-N 77 (261)
Q Consensus 4 ~~v~~~~~~~-~~~l~s~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~v~~wd~~-~ 77 (261)
..+..++|+| ++ |++++. ++.|.+|++.++..+.+..+..+...+..++|+|++++|++++ .++.+.+|++. +
T Consensus 40 ~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~ 118 (347)
T 3hfq_A 40 QNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAAD 118 (347)
T ss_dssp SCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTT
T ss_pred CCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCC
Confidence 4566799999 76 555543 6899999998765456666666778889999999999888887 67899999996 2
Q ss_pred cc--eeeeeeccC---------cceeEEEEeecCCceeeeeeecCCCCeEEEEEcC-CCceeeEEeecC-CcceEEEEEE
Q psy6859 78 FD--MINMIKLDF---------TPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCK-GNDMINMIKLDF-TPLTVECIHY 144 (261)
Q Consensus 78 ~~--~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~-~~~~~~~~~~~~-~~~~~~~~~~ 144 (261)
+. .+..+.... .....+.++++++ +++. ...++.|.+|++. +++......... .......++|
T Consensus 119 g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~---~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~ 194 (347)
T 3hfq_A 119 GALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVI---DLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVF 194 (347)
T ss_dssp SCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEE---ETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEE
T ss_pred CCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEE---eCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEE
Confidence 32 333332211 1245578888888 4332 3678899999998 454332222111 2225678999
Q ss_pred eCCCCceEEEEecCCCeEEEEEccC-CCcc--ceeeccCcc------cCeEEEEEcCCCCEE-EEEcCCCeEEEeecccc
Q psy6859 145 LGDAIPTAAVSDQDSSHVHIYDCKG-NGTP--LHVLDRLHT------KPVVLIKFNPIYQVV-VSVDKAGILEYWSGYKQ 214 (261)
Q Consensus 145 ~~~~~~~~~~~~~~d~~i~i~d~~~-~~~~--~~~~~~~~~------~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~ 214 (261)
+|++.+ +++++..++.|.+|++.. +++. +..+. ... ..+..++|+|+|++| ++...++.|.+|++...
T Consensus 195 spdg~~-l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~ 272 (347)
T 3hfq_A 195 SPDGQY-AFLAGELSSQIASLKYDTQTGAFTQLGIVK-TIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD 272 (347)
T ss_dssp CTTSSE-EEEEETTTTEEEEEEEETTTTEEEEEEEEE-SSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG
T ss_pred CCCCCE-EEEEeCCCCEEEEEEecCCCCceEEeeeee-ecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC
Confidence 999985 356667789999999872 1322 22332 111 458899999999987 45557899999998531
Q ss_pred cccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecC
Q psy6859 215 EFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMD 260 (261)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~D 260 (261)
...+.+..+..+...+..++|+|||++|++++.+
T Consensus 273 ------------g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~ 306 (347)
T 3hfq_A 273 ------------GHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQN 306 (347)
T ss_dssp ------------GCEEEEEEEECSSSCCCEEEECTTSSEEEEEETT
T ss_pred ------------CcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcC
Confidence 1123444555566678999999999999888764
No 132
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=2.8e-24 Score=173.33 Aligned_cols=235 Identities=9% Similarity=0.036 Sum_probs=176.1
Q ss_pred eEEEEEcC-CCeEEEecCCCeEEEEec--cCCceeeeEEeeccccceeEEEEee----CCCEEEEEeC-CCcEEEEEccc
Q psy6859 6 ITHVVVTK-TDFVITASNDGHIKFWKK--QEEGIEFVKHFRSHLGVIHSICTNY----NGTLLCTVAS-DKAMKVFDVIN 77 (261)
Q Consensus 6 v~~~~~~~-~~~l~s~~~d~~i~iw~~--~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~s~~~-dg~v~~wd~~~ 77 (261)
+.+++|+| +++|++++.|++|.+||+ .+. +.+.++.. ...+..++|+| |++++++++. +++|.+||..+
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~--~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t 257 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEP--TKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET 257 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSC--EEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCC--cEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc
Confidence 88999999 999999999999999999 555 67777774 45679999999 9999999884 89999999999
Q ss_pred cceeeeeeccC-----------cceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeC
Q psy6859 78 FDMINMIKLDF-----------TPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLG 146 (261)
Q Consensus 78 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (261)
++++..+.... .....+.+++++..++. +...++.|.+||+.+.+.+...... ....+..+.|+|
T Consensus 258 ~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~v---s~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~sp 333 (543)
T 1nir_A 258 LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIV---NVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDS 333 (543)
T ss_dssp CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEE---EETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECT
T ss_pred cccceeecccCcccCccccccCCceEEEEECCCCCEEEE---EECCCCeEEEEEecCCCcceeEEec-cCcCccCceECC
Confidence 99888776421 12345566665554432 2378999999999887655422221 233567889999
Q ss_pred CCCceEEEEecCCCeEEEEEccCCCccceeecc---CcccCeEEEEEcCC-CCEEEEEc-CCCeEEEeecccccccCCee
Q psy6859 147 DAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDR---LHTKPVVLIKFNPI-YQVVVSVD-KAGILEYWSGYKQEFKFPKC 221 (261)
Q Consensus 147 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~v~~~~~~~~-~~~l~~~~-~dg~i~iwd~~~~~~~~~~~ 221 (261)
++.++ ++++..+++|.+||.. +++++..+.. .|......+ ++|+ +++++++. .|++|.+||+.+...
T Consensus 334 dg~~l-~va~~~~~~v~v~D~~-tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~----- 405 (543)
T 1nir_A 334 SHRYF-MTAANNSNKVAVIDSK-DRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNH----- 405 (543)
T ss_dssp TSCEE-EEEEGGGTEEEEEETT-TTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTC-----
T ss_pred CCCEE-EEEecCCCeEEEEECC-CCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCC-----
Confidence 99863 5566678999999999 8888887761 254433333 5777 56667775 689999999864100
Q ss_pred eeeecccccceeecCCCccceeeeeECCCCceEEEee
Q psy6859 222 VHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTIS 258 (261)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 258 (261)
.....++++++..|...+..++|+|+|++|++++
T Consensus 406 ---~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~ 439 (543)
T 1nir_A 406 ---PQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDT 439 (543)
T ss_dssp ---TTTBTSEEEEEECSCSCCCCEECCTTCCEEEECC
T ss_pred ---chhcCeEEEEEEcCCCCceEEEcCCCCCcEEEec
Confidence 0012677888999988999999999999999886
No 133
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.94 E-value=3.5e-23 Score=158.68 Aligned_cols=229 Identities=14% Similarity=0.104 Sum_probs=173.4
Q ss_pred CeEEEEEcC-CC-eEEEecCCCeEEEEeccCCceeeeEEeecccc---------ceeEEEEeeCCCEEEEEe--CCCcEE
Q psy6859 5 PITHVVVTK-TD-FVITASNDGHIKFWKKQEEGIEFVKHFRSHLG---------VIHSICTNYNGTLLCTVA--SDKAMK 71 (261)
Q Consensus 5 ~v~~~~~~~-~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~s~~--~dg~v~ 71 (261)
.+..++|+| ++ .+++...++.|.+||..++ +.+..+..+.. .+.+++|+|+++++++++ .++.|.
T Consensus 90 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~ 167 (353)
T 3vgz_A 90 KPFGATINNTTQTLWFGNTVNSAVTAIDAKTG--EVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIW 167 (353)
T ss_dssp CCCSEEEETTTTEEEEEETTTTEEEEEETTTC--CEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEE
T ss_pred CcceEEECCCCCEEEEEecCCCEEEEEeCCCC--eeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEE
Confidence 456789999 77 4556677899999999887 55555654432 268899999999887776 478899
Q ss_pred EEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecC--CcceEEEEEEeCCCC
Q psy6859 72 VFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDF--TPLTVECIHYLGDAI 149 (261)
Q Consensus 72 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 149 (261)
+||..+++.+..+...........++++++.++.. +.++.|.+||+.+++.+..+.... ....+..++++|++.
T Consensus 168 ~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~----~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 243 (353)
T 3vgz_A 168 VVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTT----NADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQ 243 (353)
T ss_dssp EEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEE----CTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTT
T ss_pred EEcCCCCceEEEecCCCCccceEEECCCCCEEEEE----cCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCC
Confidence 99999998888877444445567788888877776 779999999999998887776522 234577899999998
Q ss_pred ceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEE-EcCCCeEEEeecccccccCCeeeeeeccc
Q psy6859 150 PTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVS-VDKAGILEYWSGYKQEFKFPKCVHFESKL 228 (261)
Q Consensus 150 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 228 (261)
.+ +++...++.|.+||.. +++.+..+. ... ...++|+|+++++++ ...++.|.+||+.+
T Consensus 244 ~l-~~~~~~~~~v~~~d~~-~~~~~~~~~-~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~--------------- 303 (353)
T 3vgz_A 244 RA-FITDSKAAEVLVVDTR-NGNILAKVA-APE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKS--------------- 303 (353)
T ss_dssp EE-EEEESSSSEEEEEETT-TCCEEEEEE-CSS--CCCEEEETTTTEEEEEETTTTEEEEEETTT---------------
T ss_pred EE-EEEeCCCCEEEEEECC-CCcEEEEEE-cCC--CceEEECCCCCEEEEEECCCCeEEEEECCC---------------
Confidence 63 5566667999999998 888888775 322 256999999996654 44789999999854
Q ss_pred ccceeecCCCccceeeeeECCCCceEEEeecC
Q psy6859 229 DTDLFEFAKNKTYPSGLSFSPDGNKFVTISMD 260 (261)
Q Consensus 229 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~D 260 (261)
++.+..+.. ...+.+++|+|||++|+++..+
T Consensus 304 ~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 304 YKVVKTFDT-PTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp TEEEEEEEC-CSEEEEEEECTTSCEEEEEEEC
T ss_pred CeEEEEEec-CCCCCeEEEcCCCCEEEEEEcc
Confidence 444554443 3467899999999987776554
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.94 E-value=9.3e-25 Score=183.02 Aligned_cols=232 Identities=8% Similarity=-0.051 Sum_probs=167.2
Q ss_pred CCCeEEEEEcC-CCeEEEecC-CC-----eEEEEeccCCceeeeEEeeccc------------------------cceeE
Q psy6859 3 RSPITHVVVTK-TDFVITASN-DG-----HIKFWKKQEEGIEFVKHFRSHL------------------------GVIHS 51 (261)
Q Consensus 3 ~~~v~~~~~~~-~~~l~s~~~-d~-----~i~iw~~~~~~~~~~~~~~~~~------------------------~~v~~ 51 (261)
...|.+++|+| |++|++++. |+ .|++||+.++ +....+..+. ..|.+
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSG--QTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTC--CEEEEECGGGTC--------------------CCEESCC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCC--ceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence 35689999999 899999988 88 9999999887 4444444332 34889
Q ss_pred EEEeeCCCEEEEEeCCCcEEEEEccccc--eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeE
Q psy6859 52 ICTNYNGTLLCTVASDKAMKVFDVINFD--MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINM 129 (261)
Q Consensus 52 ~~~~~~~~~l~s~~~dg~v~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~ 129 (261)
++|+|||++|++++. +.|++||+.++. ....+..+........++|+++.++.+ .++.|.+||+.+++....
T Consensus 114 ~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~-----~~~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 114 YQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFI-----RGRNLWVIDLASGRQMQL 187 (741)
T ss_dssp CEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEE-----ETTEEEEEETTTTEEEEC
T ss_pred eEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEE-----eCCcEEEEecCCCCEEEe
Confidence 999999999999886 899999998872 333444444567788899999988766 357999999998865544
Q ss_pred EeecCCc--------------ceEEEEEEeCCCCceEEEEecCCC---------------------------------eE
Q psy6859 130 IKLDFTP--------------LTVECIHYLGDAIPTAAVSDQDSS---------------------------------HV 162 (261)
Q Consensus 130 ~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~d~---------------------------------~i 162 (261)
....... ..+..+.|+||+.. ++.++.|+ .|
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~--l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSA--IAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSC--EEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred ccCCccceeccccceeeeeccccccceEECCCCCE--EEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 3322110 01467999999997 44443333 78
Q ss_pred EEEEccCC-Cccceeecc-CcccCeEEEEEcCCCCEEEEEcC-----CCeEEEeecccccccCCeeeeeecccccceeec
Q psy6859 163 HIYDCKGN-GTPLHVLDR-LHTKPVVLIKFNPIYQVVVSVDK-----AGILEYWSGYKQEFKFPKCVHFESKLDTDLFEF 235 (261)
Q Consensus 163 ~i~d~~~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (261)
++||+. + ++....... .+...+..++| |||++|+.++. +..|.+||+.+ ++....+
T Consensus 266 ~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~---------------g~~~~~~ 328 (741)
T 2ecf_A 266 GVISPA-EQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLAS---------------NQQRVLA 328 (741)
T ss_dssp EEECSS-TTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTT---------------CCEEEEE
T ss_pred EEEECC-CCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCC---------------CceEEEE
Confidence 889987 6 655443321 36788999999 99998886653 56799999854 3333333
Q ss_pred CCCcc----ceeeeeECCCCceEEEeecCC
Q psy6859 236 AKNKT----YPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 236 ~~~~~----~v~~~~~s~~~~~l~s~~~Dg 261 (261)
..+.. .+..++|+|||+++++++.||
T Consensus 329 ~~~~~~~~~~~~~~~~spdg~~~~~~~~~g 358 (741)
T 2ecf_A 329 HETSPTWVPLHNSLRFLDDGSILWSSERTG 358 (741)
T ss_dssp EEECSSCCCCCSCCEECTTSCEEEEECTTS
T ss_pred EcCCCCcCCcCCceEECCCCeEEEEecCCC
Confidence 33332 456899999999888887764
No 135
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.94 E-value=2.2e-23 Score=158.61 Aligned_cols=237 Identities=11% Similarity=0.065 Sum_probs=164.6
Q ss_pred CCeEEEEEcC-CCeEEEe-cCCCeEEEEeccCCceee-eEEeeccccceeEEEEeeCCCEEEEEeCCC---cEEEEEccc
Q psy6859 4 SPITHVVVTK-TDFVITA-SNDGHIKFWKKQEEGIEF-VKHFRSHLGVIHSICTNYNGTLLCTVASDK---AMKVFDVIN 77 (261)
Q Consensus 4 ~~v~~~~~~~-~~~l~s~-~~d~~i~iw~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg---~v~~wd~~~ 77 (261)
..+ +++|+| +++++++ ..++.|.+||..++ +. ...+..+..+..+++|+|++++++++..++ .|.+||+.+
T Consensus 41 ~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~ 117 (331)
T 3u4y_A 41 DFV-DTAITSDCSNVVVTSDFCQTLVQIETQLE--PPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLK 117 (331)
T ss_dssp CEE-EEEECSSSCEEEEEESTTCEEEEEECSSS--SCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTT
T ss_pred Ccc-eEEEcCCCCEEEEEeCCCCeEEEEECCCC--ceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCC
Confidence 445 899999 7755554 45899999999886 44 566666666666699999999999555553 899999999
Q ss_pred cceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCe-EEEEEcCCCceeeEE--eecCCcceEEEEEEeCCCCceEEE
Q psy6859 78 FDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSR-VHIYDCKGNDMINMI--KLDFTPLTVECIHYLGDAIPTAAV 154 (261)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~-i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 154 (261)
++.+..+.....+ ..+.++++++.+++. ...++. +.+|++.....+... ...........+.|+|++.+ +++
T Consensus 118 ~~~~~~~~~~~~~-~~~~~spdg~~l~~~---~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~-l~v 192 (331)
T 3u4y_A 118 NKFISTIPIPYDA-VGIAISPNGNGLILI---DRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNF-AFV 192 (331)
T ss_dssp TEEEEEEECCTTE-EEEEECTTSSCEEEE---EETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSE-EEE
T ss_pred CCeEEEEECCCCc-cceEECCCCCEEEEE---ecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCE-EEE
Confidence 9888877765544 677888888766544 234567 999999864433211 11112335689999999985 366
Q ss_pred EecCCCeEEEEEccCCCcc---ceeeccCcccCeEEEEEcCCCCEEEEEc-CCCeEEEeecccccccCCeeeeeeccccc
Q psy6859 155 SDQDSSHVHIYDCKGNGTP---LHVLDRLHTKPVVLIKFNPIYQVVVSVD-KAGILEYWSGYKQEFKFPKCVHFESKLDT 230 (261)
Q Consensus 155 ~~~~d~~i~i~d~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 230 (261)
++..++.|++||+. +++. +..+. ....+..++|+|+|++|+++. .++.|.+||+.+++......
T Consensus 193 ~~~~~~~v~v~d~~-~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~--------- 260 (331)
T 3u4y_A 193 ANLIGNSIGILETQ-NPENITLLNAVG--TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKS--------- 260 (331)
T ss_dssp EETTTTEEEEEECS-STTSCEEEEEEE--CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEE---------
T ss_pred EeCCCCeEEEEECC-CCcccceeeecc--CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecc---------
Confidence 66778999999998 7877 77774 446678999999999776554 57889999986542210000
Q ss_pred ceeecCCCcc---ceeeeeECCCCceEEEeecC
Q psy6859 231 DLFEFAKNKT---YPSGLSFSPDGNKFVTISMD 260 (261)
Q Consensus 231 ~~~~~~~~~~---~v~~~~~s~~~~~l~s~~~D 260 (261)
....+..+.. ....++|+|||++|++++.+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~ 293 (331)
T 3u4y_A 261 FGHGLLIDPRPLFGANQMALNKTETKLFISANI 293 (331)
T ss_dssp EECCCCCCCGGGTTCCCEEECTTSSEEEEEETT
T ss_pred cccccccCCCCcccccceEECCCCCEEEEecCC
Confidence 0001111122 22568999999998777654
No 136
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.93 E-value=8.9e-23 Score=155.20 Aligned_cols=220 Identities=11% Similarity=0.108 Sum_probs=161.4
Q ss_pred EEcC--CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeC-CCcEEEEEccccce-eeeee
Q psy6859 10 VVTK--TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVAS-DKAMKVFDVINFDM-INMIK 85 (261)
Q Consensus 10 ~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~v~~wd~~~~~~-~~~~~ 85 (261)
.|.+ +..+++++.++.|.+||..++ +....+..+...+ .++|+|+++++++++. ++.|.+||+.+++. ...+.
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~ 80 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTL--EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQ 80 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTC--CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCccc--ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecc
Confidence 3444 445788899999999999887 5556666556666 9999999997776665 88999999999887 66776
Q ss_pred ccCcceeEEEEeecCCceeeeeeecCCC-C--eEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCe-
Q psy6859 86 LDFTPLTVECIHYLGDAIPTAAVSDQDS-S--RVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSH- 161 (261)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~s~~~d-~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~- 161 (261)
....+...+.++++++.+++. ..+ + .|.+||+.+++.+..+.... ....++|+|++.+ ++++...++.
T Consensus 81 ~~~~~~~~~~~s~dg~~l~~~----~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~spdg~~-l~~~~~~~~~~ 152 (331)
T 3u4y_A 81 EGQSSMADVDITPDDQFAVTV----TGLNHPFNMQSYSFLKNKFISTIPIPY---DAVGIAISPNGNG-LILIDRSSANT 152 (331)
T ss_dssp ECSSCCCCEEECTTSSEEEEC----CCSSSSCEEEEEETTTTEEEEEEECCT---TEEEEEECTTSSC-EEEEEETTTTE
T ss_pred cCCCCccceEECCCCCEEEEe----cCCCCcccEEEEECCCCCeEEEEECCC---CccceEECCCCCE-EEEEecCCCce
Confidence 666665547888998877733 333 3 99999999998888776543 4589999999986 3555566677
Q ss_pred EEEEEccCCCcc----ceeeccCcccCeEEEEEcCCCCEE-EEEcCCCeEEEeecccccccCCeeeeeecccccc---ee
Q psy6859 162 VHIYDCKGNGTP----LHVLDRLHTKPVVLIKFNPIYQVV-VSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTD---LF 233 (261)
Q Consensus 162 i~i~d~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~ 233 (261)
|.+|++...+.. ...+ .....+..++|+|+|++| +++..++.|.+||+.+ ++. +.
T Consensus 153 i~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~---------------~~~~~~~~ 215 (331)
T 3u4y_A 153 VRRFKIDADGVLFDTGQEFI--SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQN---------------PENITLLN 215 (331)
T ss_dssp EEEEEECTTCCEEEEEEEEE--CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSS---------------TTSCEEEE
T ss_pred EEEEEECCCCcEeecCCccc--cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCC---------------Ccccceee
Confidence 999999733322 1222 344568999999999966 5555789999999854 333 44
Q ss_pred ecCCCccceeeeeECCCCceEEEee
Q psy6859 234 EFAKNKTYPSGLSFSPDGNKFVTIS 258 (261)
Q Consensus 234 ~~~~~~~~v~~~~~s~~~~~l~s~~ 258 (261)
.+.. ...+..++|+|||++|+.++
T Consensus 216 ~~~~-~~~~~~~~~spdg~~l~v~~ 239 (331)
T 3u4y_A 216 AVGT-NNLPGTIVVSRDGSTVYVLT 239 (331)
T ss_dssp EEEC-SSCCCCEEECTTSSEEEEEC
T ss_pred eccC-CCCCceEEECCCCCEEEEEE
Confidence 4443 36678999999999877654
No 137
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.93 E-value=1.6e-23 Score=156.42 Aligned_cols=218 Identities=11% Similarity=0.015 Sum_probs=158.9
Q ss_pred EecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccc-cceeeeeecc-CcceeEEEE
Q psy6859 19 TASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVIN-FDMINMIKLD-FTPLTVECI 96 (261)
Q Consensus 19 s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~-~~~~~~~~~~-~~~~~~~~~ 96 (261)
.++.|+.|++||+.++ +.. .+..|...|.+++|+|++++|++++ ++.|++||+.+ ++.......+ ........+
T Consensus 17 ~~~~~~~i~~~d~~~~--~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 92 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTR--KMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGI 92 (297)
T ss_dssp -CCCCEEEEEEETTTT--EEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEE
T ss_pred CCCcceeEEEEeCCCC--cee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEE
Confidence 4578899999999886 443 4455888999999999999999876 78999999998 7766555433 244566788
Q ss_pred eecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCcccee
Q psy6859 97 HYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHV 176 (261)
Q Consensus 97 ~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~ 176 (261)
+++++.++...........|..+++.+++ ...+... ..+..+.|+|++..+ ++++..++.+++|++.........
T Consensus 93 spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~---~~~~~~~~spdg~~l-~~~~~~~~~~~l~~~~~~~~~~~~ 167 (297)
T 2ojh_A 93 SPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN---LPSYWHGWSPDGKSF-TYCGIRDQVFDIYSMDIDSGVETR 167 (297)
T ss_dssp CTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS---SSEEEEEECTTSSEE-EEEEEETTEEEEEEEETTTCCEEE
T ss_pred CCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC---CCccceEECCCCCEE-EEEECCCCceEEEEEECCCCcceE
Confidence 89988777661111123455555655554 2333222 247888999999863 446667899999997533444555
Q ss_pred eccCcccCeEEEEEcCCCCEEEEEc-CCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEE
Q psy6859 177 LDRLHTKPVVLIKFNPIYQVVVSVD-KAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFV 255 (261)
Q Consensus 177 ~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 255 (261)
+. .+...+.+++|+|++++|+.++ .++.+++|++.. ....+..+..|...+..++|+|+|++|+
T Consensus 168 ~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~--------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 232 (297)
T 2ojh_A 168 LT-HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRV--------------DGSSVERITDSAYGDWFPHPSPSGDKVV 232 (297)
T ss_dssp CC-CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET--------------TSSCEEECCCCSEEEEEEEECTTSSEEE
T ss_pred cc-cCCCccccceECCCCCEEEEEecCCCCccEEEECC--------------CCCCcEEEecCCcccCCeEECCCCCEEE
Confidence 55 6788899999999999887655 689999999852 2345566777888899999999999999
Q ss_pred EeecC
Q psy6859 256 TISMD 260 (261)
Q Consensus 256 s~~~D 260 (261)
+++.|
T Consensus 233 ~~~~~ 237 (297)
T 2ojh_A 233 FVSYD 237 (297)
T ss_dssp EEEEE
T ss_pred EEEcC
Confidence 88765
No 138
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.93 E-value=2.9e-23 Score=167.40 Aligned_cols=222 Identities=11% Similarity=0.060 Sum_probs=169.3
Q ss_pred EEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEc--cccceeeeeec
Q psy6859 10 VVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDV--INFDMINMIKL 86 (261)
Q Consensus 10 ~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~--~~~~~~~~~~~ 86 (261)
+++| +..+++++.|++|.+||..++ +.+.++..+.. +..++|+||+++|++++.|+.|++||+ .+++.+..+..
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~--~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~ 220 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSK--KIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI 220 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTC--CEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCc--eEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec
Confidence 3778 778899999999999999887 67777773333 889999999999999999999999999 78888888875
Q ss_pred cCcceeEEEEee----cCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecC--------C-cceEEEEEEeCCCCceEE
Q psy6859 87 DFTPLTVECIHY----LGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDF--------T-PLTVECIHYLGDAIPTAA 153 (261)
Q Consensus 87 ~~~~~~~~~~~~----~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~ 153 (261)
... ...+.+++ +++.+++. ...+++|.+||..+.+++..+.... + ...+..+.++|++.. ++
T Consensus 221 g~~-p~~va~sp~~~~dg~~l~v~---~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~-~~ 295 (543)
T 1nir_A 221 GIE-ARSVESSKFKGYEDRYTIAG---AYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPE-FI 295 (543)
T ss_dssp CSE-EEEEEECCSTTCTTTEEEEE---EEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSE-EE
T ss_pred CCC-cceEEeCCCcCCCCCEEEEE---EccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCE-EE
Confidence 444 46677888 88877765 1258999999999999988886531 1 226889999998875 47
Q ss_pred EEecCCCeEEEEEccCCCccce--eeccCcccCeEEEEEcCCCCEEEE-EcCCCeEEEeecccccccCCeeeeeeccccc
Q psy6859 154 VSDQDSSHVHIYDCKGNGTPLH--VLDRLHTKPVVLIKFNPIYQVVVS-VDKAGILEYWSGYKQEFKFPKCVHFESKLDT 230 (261)
Q Consensus 154 ~~~~~d~~i~i~d~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 230 (261)
++...++.|.+||+. +.+.+. .+ .+...+..+.|+|+|++|++ +..+++|.+||+.+ ++
T Consensus 296 vs~~~~g~i~vvd~~-~~~~l~~~~i--~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~t---------------g~ 357 (543)
T 1nir_A 296 VNVKETGKVLLVNYK-DIDNLTVTSI--GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKD---------------RR 357 (543)
T ss_dssp EEETTTTEEEEEECT-TSSSCEEEEE--ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTT---------------TE
T ss_pred EEECCCCeEEEEEec-CCCcceeEEe--ccCcCccCceECCCCCEEEEEecCCCeEEEEECCC---------------Ce
Confidence 788889999999998 655444 44 35667889999999997754 45689999999954 44
Q ss_pred ceeecCC----CccceeeeeECCC-CceEEEee
Q psy6859 231 DLFEFAK----NKTYPSGLSFSPD-GNKFVTIS 258 (261)
Q Consensus 231 ~~~~~~~----~~~~v~~~~~s~~-~~~l~s~~ 258 (261)
++..+.. |.+....+ ++|+ +..+++++
T Consensus 358 l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~ 389 (543)
T 1nir_A 358 LSALVDVGKTPHPGRGANF-VHPKYGPVWSTSH 389 (543)
T ss_dssp EEEEEECSSSBCCTTCEEE-EETTTEEEEEEEB
T ss_pred EEEeeccCCCCCCCCCccc-CCCCCccEEEecc
Confidence 5544442 54433333 4676 66666654
No 139
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.93 E-value=5.2e-24 Score=173.90 Aligned_cols=224 Identities=12% Similarity=0.055 Sum_probs=162.4
Q ss_pred CCCeEEEEEcC-CCeEEEecC-CCeEEEEeccCCceeeeEEeeccc-cceeEEEEeeCCCEEEEEeC---CCcEEEEEcc
Q psy6859 3 RSPITHVVVTK-TDFVITASN-DGHIKFWKKQEEGIEFVKHFRSHL-GVIHSICTNYNGTLLCTVAS---DKAMKVFDVI 76 (261)
Q Consensus 3 ~~~v~~~~~~~-~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~---dg~v~~wd~~ 76 (261)
..+|++++|+| |+.||+++. ||+++||+++++ +.. .+..|. ..+..++|+|| +.+++++. +...++|.+.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g--~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~ 96 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG--ETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVN 96 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT--EEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCC--CcE-eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEe
Confidence 35799999999 899998887 999999998765 443 344454 68999999999 77777765 4556676654
Q ss_pred c---cceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEE
Q psy6859 77 N---FDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAA 153 (261)
Q Consensus 77 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (261)
. +... .+.. ........++++++.++.+ + ..++.+.+||+.+++......... ..+.|+||+.. +
T Consensus 97 ~~~~g~~~-~l~~-~~~~~~~~~s~dg~~~~~~--s-~~~~~~~l~d~~~g~~~~l~~~~~-----~~~~~spDG~~--l 164 (582)
T 3o4h_A 97 TSRPGEEQ-RLEA-VKPMRILSGVDTGEAVVFT--G-ATEDRVALYALDGGGLRELARLPG-----FGFVSDIRGDL--I 164 (582)
T ss_dssp TTSTTCCE-ECTT-SCSBEEEEEEECSSCEEEE--E-ECSSCEEEEEEETTEEEEEEEESS-----CEEEEEEETTE--E
T ss_pred ccCCCccc-cccC-CCCceeeeeCCCCCeEEEE--e-cCCCCceEEEccCCcEEEeecCCC-----ceEEECCCCCE--E
Confidence 3 2222 2222 2223466888888765443 2 234445599999887655544322 68899999986 5
Q ss_pred EEecCC----CeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCC--eEEEeecccccccCCeeeeeecc
Q psy6859 154 VSDQDS----SHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAG--ILEYWSGYKQEFKFPKCVHFESK 227 (261)
Q Consensus 154 ~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~ 227 (261)
++++.+ +.|++||+. +++.. .+. .+...+..++|+|||+.|+++..++ .|++||+.+
T Consensus 165 a~~~~~~~~~~~i~~~d~~-~g~~~-~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~-------------- 227 (582)
T 3o4h_A 165 AGLGFFGGGRVSLFTSNLS-SGGLR-VFD-SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRD-------------- 227 (582)
T ss_dssp EEEEEEETTEEEEEEEETT-TCCCE-EEC-CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTT--------------
T ss_pred EEEEEcCCCCeEEEEEcCC-CCCce-Eee-cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCC--------------
Confidence 544444 679999987 66544 565 7888899999999999999888888 899999854
Q ss_pred cccceeecCCCccceeeee--------ECCCCceEEEeecCC
Q psy6859 228 LDTDLFEFAKNKTYPSGLS--------FSPDGNKFVTISMDR 261 (261)
Q Consensus 228 ~~~~~~~~~~~~~~v~~~~--------~s~~~~~l~s~~~Dg 261 (261)
++.. .+.+|...+..++ |+|||.++++++.||
T Consensus 228 -~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g 267 (582)
T 3o4h_A 228 -GSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREG 267 (582)
T ss_dssp -CCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETT
T ss_pred -CcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCC
Confidence 4444 5667777888888 999998888888775
No 140
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.92 E-value=4.2e-24 Score=178.57 Aligned_cols=227 Identities=12% Similarity=0.063 Sum_probs=160.3
Q ss_pred CeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeecccc---ceeEEEEeeCCCEEEEEeCC---------CcEE
Q psy6859 5 PITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLG---VIHSICTNYNGTLLCTVASD---------KAMK 71 (261)
Q Consensus 5 ~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~s~~~d---------g~v~ 71 (261)
.+.+++|+| ++++++ +.||+|++||+.++ +....+..|.. .|.+++|+|||++|++++.+ +.+.
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g--~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~ 94 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETN--TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYV 94 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGC--CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCC--cEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEE
Confidence 367889999 786665 78999999999987 55566666654 49999999999999998764 7788
Q ss_pred EEEccccceeeeeecc---CcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcc-----------
Q psy6859 72 VFDVINFDMINMIKLD---FTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPL----------- 137 (261)
Q Consensus 72 ~wd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~----------- 137 (261)
+||+.+++. ..+... ........++|+++.++.+ .++.|++||+.+++............
T Consensus 95 ~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~-----~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ 168 (723)
T 1xfd_A 95 LSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFI-----FENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYE 168 (723)
T ss_dssp EEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEE-----ETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHH
T ss_pred EEECCCCce-EeccCCccccccccccEECCCCCEEEEE-----ECCeEEEEECCCCceEEEecCCCCCceECcccceeEE
Confidence 999988875 222211 1224567889999988776 34899999999887665544322111
Q ss_pred -----eEEEEEEeCCCCceEEEEecC--------------------------------CCeEEEEEccCCCccceeeccC
Q psy6859 138 -----TVECIHYLGDAIPTAAVSDQD--------------------------------SSHVHIYDCKGNGTPLHVLDRL 180 (261)
Q Consensus 138 -----~~~~~~~~~~~~~~~~~~~~~--------------------------------d~~i~i~d~~~~~~~~~~~~~~ 180 (261)
.+..+.|+||+..+++.+... +..|++||+. +++....+. .
T Consensus 169 ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~-~~~~~~~l~-~ 246 (723)
T 1xfd_A 169 EEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLN-GPTHDLEMM-P 246 (723)
T ss_dssp HTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESS-SSCCCEECC-C
T ss_pred EEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECC-CCceeEEee-C
Confidence 236899999998743332211 1279999998 776555664 3
Q ss_pred c------ccCeEEEEEcCCCCEEEEEcC----CCeEEEeecccccccCCeeeeeecccccceeecCC-Cccce----eee
Q psy6859 181 H------TKPVVLIKFNPIYQVVVSVDK----AGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK-NKTYP----SGL 245 (261)
Q Consensus 181 ~------~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v----~~~ 245 (261)
+ ...+..++|+|||++|++... +..|++||+.+ ++....+.. +...+ ..+
T Consensus 247 ~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~---------------g~~~~~~~~~~~~~~~~~~~~~ 311 (723)
T 1xfd_A 247 PDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT---------------GVCTKKHEDESEAWLHRQNEEP 311 (723)
T ss_dssp CCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT---------------CCEEEEEEEECSSCCCCCCCCC
T ss_pred CccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCC---------------CcceEEEEeccCCEEeccCCCc
Confidence 3 667899999999998876642 35799999854 333333322 33343 378
Q ss_pred eECCCCceEEEe
Q psy6859 246 SFSPDGNKFVTI 257 (261)
Q Consensus 246 ~~s~~~~~l~s~ 257 (261)
+|+|||+.|+..
T Consensus 312 ~~spdg~~l~~~ 323 (723)
T 1xfd_A 312 VFSKDGRKFFFI 323 (723)
T ss_dssp EECTTSCSEEEE
T ss_pred eEcCCCCeEEEE
Confidence 999999988865
No 141
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.92 E-value=3.3e-23 Score=172.82 Aligned_cols=235 Identities=11% Similarity=0.070 Sum_probs=167.9
Q ss_pred CCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccc-----c
Q psy6859 4 SPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVIN-----F 78 (261)
Q Consensus 4 ~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~-----~ 78 (261)
..|.+++|+|++.++.+ .++.|++||+.++ +.. .+..+...+..++|+|||++|+.+ .++.|++||+.+ +
T Consensus 82 ~~v~~~~~spd~~~~~~-~~~~i~~~d~~~~--~~~-~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g 156 (706)
T 2z3z_A 82 FPSFRTLDAGRGLVVLF-TQGGLVGFDMLAR--KVT-YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMS 156 (706)
T ss_dssp CCCEEEEETTTTEEEEE-ETTEEEEEETTTT--EEE-EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCC
T ss_pred cCceeEEECCCCeEEEE-ECCEEEEEECCCC--ceE-EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCC
Confidence 56999999996444444 4599999999876 433 344466789999999999999985 789999999988 7
Q ss_pred ceeeeeeccCcc--------------eeEEEEeecCCceeeeeee-----------------------------cCCCCe
Q psy6859 79 DMINMIKLDFTP--------------LTVECIHYLGDAIPTAAVS-----------------------------DQDSSR 115 (261)
Q Consensus 79 ~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~s-----------------------------~~~d~~ 115 (261)
+........... .....++++++.++...+. ...+..
T Consensus 157 ~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~ 236 (706)
T 2z3z_A 157 RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT 236 (706)
T ss_dssp CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence 665543322221 3577899999988776321 114578
Q ss_pred EEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCC-----eEEEEEccCCCccceeec-cCccc---CeE
Q psy6859 116 VHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS-----HVHIYDCKGNGTPLHVLD-RLHTK---PVV 186 (261)
Q Consensus 116 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-----~i~i~d~~~~~~~~~~~~-~~~~~---~v~ 186 (261)
|.+||+.+++.........+...+..++|+|++.. +++++.++ .|++||+. +++....+. ..+.. .+.
T Consensus 237 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~--l~~~~~~~~~~~~~v~~~d~~-~g~~~~~~~~~~~~~~~~~~~ 313 (706)
T 2z3z_A 237 VGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENI--LYVAEVNRAQNECKVNAYDAE-TGRFVRTLFVETDKHYVEPLH 313 (706)
T ss_dssp EEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSE--EEEEEECTTSCEEEEEEEETT-TCCEEEEEEEEECSSCCCCCS
T ss_pred EEEEECCCCceEeeccCCCCceeEeeEEEECCCCE--EEEEEeCCCCCeeEEEEEECC-CCceeeEEEEccCCCeECccC
Confidence 99999998876544433234457899999999986 44433343 89999998 763333332 11222 246
Q ss_pred EEEEcC--CCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceee-eeECCCCceEEEeecC
Q psy6859 187 LIKFNP--IYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSG-LSFSPDGNKFVTISMD 260 (261)
Q Consensus 187 ~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~s~~~D 260 (261)
.++|+| +|++|++++.|+.+++|+++. .+..+..+..+...+.. ++|+|+|+.|+.++.+
T Consensus 314 ~~~~sp~~dg~~l~~~~~~g~~~l~~~~~--------------~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~ 376 (706)
T 2z3z_A 314 PLTFLPGSNNQFIWQSRRDGWNHLYLYDT--------------TGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTE 376 (706)
T ss_dssp CCEECTTCSSEEEEEECTTSSCEEEEEET--------------TSCEEEECCCSSSCEEEEEEECTTSSEEEEEESS
T ss_pred CceeecCCCCEEEEEEccCCccEEEEEEC--------------CCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecC
Confidence 789999 999999999999999998751 24556667777777877 7999999988766543
No 142
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.92 E-value=5.8e-23 Score=161.48 Aligned_cols=200 Identities=10% Similarity=0.050 Sum_probs=145.0
Q ss_pred CCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCc---------ee-----eeEEeeccccceeEEEEeeCCCEEE----E
Q psy6859 3 RSPITHVVVTK-TDFVITASNDGHIKFWKKQEEG---------IE-----FVKHFRSHLGVIHSICTNYNGTLLC----T 63 (261)
Q Consensus 3 ~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~---------~~-----~~~~~~~~~~~v~~~~~~~~~~~l~----s 63 (261)
...++.+++++ +.++++++.|+ +++|+..... .. ....+ .+...|.+++|+|++++|+ +
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccc-cCCCcccEEEEcCCCCEEEEEEec
Confidence 34578899999 88999998887 8888754210 00 01112 2567799999999999999 7
Q ss_pred EeCCCcEEEEEcccc--------ce---eeeeeccCcceeEEEEeec-CCceeeeeeecCCCCeEEEEEcCCCceeeEEe
Q psy6859 64 VASDKAMKVFDVINF--------DM---INMIKLDFTPLTVECIHYL-GDAIPTAAVSDQDSSRVHIYDCKGNDMINMIK 131 (261)
Q Consensus 64 ~~~dg~v~~wd~~~~--------~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~ 131 (261)
++.|+.|++||+.++ +. ...+..+...+..+.++++ +..++++ +.|++|++||++++..+....
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~----s~Dg~v~iwD~~~~~~~~~~~ 189 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVC----LADGSIAVLQVTETVKVCATL 189 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEE----ETTSCEEEEEESSSEEEEEEE
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEE----ECCCeEEEEEcCCCcceeecc
Confidence 889999999999765 22 2333335667788888887 5555555 899999999999885544333
Q ss_pred ecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeec------cCcccCeEEEEEcCCCCEEEE-EcCCC
Q psy6859 132 LDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD------RLHTKPVVLIKFNPIYQVVVS-VDKAG 204 (261)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~-~~~dg 204 (261)
. +...+.+++|+|++.+ +++|+.|+.|++||.+ ++....+. ..|...|.+++|++++.++++ ...||
T Consensus 190 ~--~~~~v~~v~wspdg~~--lasgs~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg 263 (434)
T 2oit_A 190 P--STVAVTSVCWSPKGKQ--LAVGKQNGTVVQYLPT--LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADG 263 (434)
T ss_dssp C--GGGCEEEEEECTTSSC--EEEEETTSCEEEECTT--CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTC
T ss_pred C--CCCceeEEEEcCCCCE--EEEEcCCCcEEEEccC--CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCC
Confidence 2 4568999999999987 8889999999999997 33444443 012348999999999887754 33443
Q ss_pred ------eEEEeecccc
Q psy6859 205 ------ILEYWSGYKQ 214 (261)
Q Consensus 205 ------~i~iwd~~~~ 214 (261)
.+++|+++..
T Consensus 264 ~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 264 TLETSPDVVMALLPKK 279 (434)
T ss_dssp CSSSCCEEEEEECCCT
T ss_pred ccCCCCceEEEEeccC
Confidence 3899999753
No 143
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.92 E-value=3.9e-22 Score=152.86 Aligned_cols=228 Identities=11% Similarity=0.004 Sum_probs=168.1
Q ss_pred CCeEEEEEcC-CCeEEEecC-------CCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEE-EeCCCcEEEEE
Q psy6859 4 SPITHVVVTK-TDFVITASN-------DGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCT-VASDKAMKVFD 74 (261)
Q Consensus 4 ~~v~~~~~~~-~~~l~s~~~-------d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~~~dg~v~~wd 74 (261)
..+..++|+| ++++++++. ++.|.+||..+. +....+.. ...+..++|+|++++++. ...++.|.+||
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~--~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTL--EVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTC--CEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCC--eEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 4577899999 777777663 578999999887 56666653 345789999999996554 45579999999
Q ss_pred ccccceeeeeeccCcc---------eeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEe
Q psy6859 75 VINFDMINMIKLDFTP---------LTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYL 145 (261)
Q Consensus 75 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (261)
..+++.+..+..+... ...+.++++++.++... ...++.|.+||+.+++.+..+.... ..+..+.++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~--~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~s 193 (353)
T 3vgz_A 118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISG--IGKESVIWVVDGGNIKLKTAIQNTG--KMSTGLALD 193 (353)
T ss_dssp TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEE--ESSSCEEEEEETTTTEEEEEECCCC--TTCCCCEEE
T ss_pred CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEe--cCCCceEEEEcCCCCceEEEecCCC--CccceEEEC
Confidence 9999988877754321 35577888888766541 1358899999999998887776322 235678999
Q ss_pred CCCCceEEEEecCCCeEEEEEccCCCccceeecc---CcccCeEEEEEcCCCCEEEEEc-CCCeEEEeecccccccCCee
Q psy6859 146 GDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDR---LHTKPVVLIKFNPIYQVVVSVD-KAGILEYWSGYKQEFKFPKC 221 (261)
Q Consensus 146 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~ 221 (261)
|++.. +++++.++.|.+||.. +++.+..+.. ++...+..++|+|++++|++++ .++.|.+||+.+
T Consensus 194 ~dg~~--l~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~-------- 262 (353)
T 3vgz_A 194 SEGKR--LYTTNADGELITIDTA-DNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRN-------- 262 (353)
T ss_dssp TTTTE--EEEECTTSEEEEEETT-TTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTT--------
T ss_pred CCCCE--EEEEcCCCeEEEEECC-CCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCC--------
Confidence 99986 5555669999999998 8887777651 2455688999999999776655 559999999854
Q ss_pred eeeecccccceeecCCCccceeeeeECCCCceEEEee
Q psy6859 222 VHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTIS 258 (261)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 258 (261)
++.+..+.... ...++|+|+|++|+.++
T Consensus 263 -------~~~~~~~~~~~--~~~~~~s~dg~~l~v~~ 290 (353)
T 3vgz_A 263 -------GNILAKVAAPE--SLAVLFNPARNEAYVTH 290 (353)
T ss_dssp -------CCEEEEEECSS--CCCEEEETTTTEEEEEE
T ss_pred -------CcEEEEEEcCC--CceEEECCCCCEEEEEE
Confidence 44444444322 26799999999766655
No 144
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=2.3e-23 Score=174.57 Aligned_cols=235 Identities=9% Similarity=0.013 Sum_probs=168.6
Q ss_pred CeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeee
Q psy6859 5 PITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINM 83 (261)
Q Consensus 5 ~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~ 83 (261)
.|.+++|+| +++|++++. +.|.+|++.++.......+..|...+..++|+|||++|+.++ ++.|++||+.+++....
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQL 187 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEEC
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEe
Confidence 378999999 888888886 999999998751003445667778899999999999999887 46999999988776554
Q ss_pred eeccCcc----------------eeEEEEeecCCceeeeeeecC-----------------------------CCCeEEE
Q psy6859 84 IKLDFTP----------------LTVECIHYLGDAIPTAAVSDQ-----------------------------DSSRVHI 118 (261)
Q Consensus 84 ~~~~~~~----------------~~~~~~~~~~~~~~~~~~s~~-----------------------------~d~~i~i 118 (261)
....... .....++++++.++.....++ ....|.+
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~ 267 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGV 267 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEE
T ss_pred ccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEE
Confidence 3322221 256788999998877622111 0017888
Q ss_pred EEcCC-CceeeEEeecCCcceEEEEEEeCCCCceEEEEe---cCCCeEEEEEccCCCccceeeccCccc----CeEEEEE
Q psy6859 119 YDCKG-NDMINMIKLDFTPLTVECIHYLGDAIPTAAVSD---QDSSHVHIYDCKGNGTPLHVLDRLHTK----PVVLIKF 190 (261)
Q Consensus 119 ~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~i~i~d~~~~~~~~~~~~~~~~~----~v~~~~~ 190 (261)
||+.+ ++.........+...+..++| |++..+++.+. ..+..|++||+. +++....+. .+.. .+..++|
T Consensus 268 ~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~-~g~~~~~~~-~~~~~~~~~~~~~~~ 344 (741)
T 2ecf_A 268 ISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLA-SNQQRVLAH-ETSPTWVPLHNSLRF 344 (741)
T ss_dssp ECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETT-TCCEEEEEE-EECSSCCCCCSCCEE
T ss_pred EECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECC-CCceEEEEE-cCCCCcCCcCCceEE
Confidence 99988 765443322234567899999 99987433332 235789999998 777666664 3332 4568899
Q ss_pred cCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeee-eECCCCceEEEeec
Q psy6859 191 NPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGL-SFSPDGNKFVTISM 259 (261)
Q Consensus 191 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~s~~~ 259 (261)
+|||+++++++.||.++||.++. .++ ...+..|...+..+ .|+|+|+.|+..+.
T Consensus 345 spdg~~~~~~~~~g~~~l~~~~~--------------~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~ 399 (741)
T 2ecf_A 345 LDDGSILWSSERTGFQHLYRIDS--------------KGK-AAALTHGNWSVDELLAVDEKAGLAYFRAG 399 (741)
T ss_dssp CTTSCEEEEECTTSSCEEEEECS--------------SSC-EEESCCSSSCEEEEEEEETTTTEEEEEEC
T ss_pred CCCCeEEEEecCCCccEEEEEcC--------------CCC-eeeeeecceEEEeEeEEeCCCCEEEEEEe
Confidence 99999989999999888887642 133 66677777888887 59999998765443
No 145
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.91 E-value=1.1e-22 Score=155.62 Aligned_cols=223 Identities=10% Similarity=-0.008 Sum_probs=159.2
Q ss_pred EEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccc-cceeEEEEeeCCCEEE-EEeCCCcEEEEEccccceeeee
Q psy6859 8 HVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHL-GVIHSICTNYNGTLLC-TVASDKAMKVFDVINFDMINMI 84 (261)
Q Consensus 8 ~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~-s~~~dg~v~~wd~~~~~~~~~~ 84 (261)
.+++++ +.++++++.++.|.+||..++ +.+..+..+. ..+..++|+|++++++ +...++.|.+||+.+++.+..+
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~ 81 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASD--TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA 81 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTT--EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCC--cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEE
Confidence 456777 778899999999999999887 6666666443 2578999999998665 5557899999999998887776
Q ss_pred eccCc------ceeEEEEeecCCceeeeeeecCC------------CCeEEEEEcCCCceeeEEeecCCcceEEEEEEeC
Q psy6859 85 KLDFT------PLTVECIHYLGDAIPTAAVSDQD------------SSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLG 146 (261)
Q Consensus 85 ~~~~~------~~~~~~~~~~~~~~~~~~~s~~~------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (261)
..... ....+.++++++.++.. +. ++.|.+||+.+++....+.....+..+.+++|+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~spdg~~l~~~----~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~ 157 (349)
T 1jmx_B 82 NLSSVPGEVGRSMYSFAISPDGKEVYAT----VNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD 157 (349)
T ss_dssp ESCCSTTEEEECSSCEEECTTSSEEEEE----EEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECT
T ss_pred EcccccccccccccceEECCCCCEEEEE----cccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECC
Confidence 64332 14567788888877765 32 4899999998854433222212333577889999
Q ss_pred CCCceEEEEecCCCeEEEEEccCCCccceeeccCcc--------------------------------------------
Q psy6859 147 DAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHT-------------------------------------------- 182 (261)
Q Consensus 147 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-------------------------------------------- 182 (261)
++. . ++ ++ +.|++||.. +++.+..+. .+.
T Consensus 158 dg~-l-~~-~~--~~i~~~d~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 230 (349)
T 1jmx_B 158 DGS-L-YV-AG--PDIYKMDVK-TGKYTVALP-LRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATAD 230 (349)
T ss_dssp TSC-E-EE-ES--SSEEEECTT-TCCEEEEEC-STTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCE
T ss_pred CCc-E-EE-cc--CcEEEEeCC-CCceecccc-ccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccc
Confidence 997 2 44 33 349999998 776665553 111
Q ss_pred ------------------------cCeEEEEEcC-CCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCC
Q psy6859 183 ------------------------KPVVLIKFNP-IYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK 237 (261)
Q Consensus 183 ------------------------~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (261)
..+..++|+| ++++|+++ ++.|.+||+.+ ++.+..+..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~---------------~~~~~~~~~ 293 (349)
T 1jmx_B 231 LLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQ---------------RKLIKAANL 293 (349)
T ss_dssp EEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTT---------------TEEEEEEEC
T ss_pred cceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECcc---------------CeEEEEEcC
Confidence 1345677889 99998888 88999999854 444444432
Q ss_pred CccceeeeeECCCCceEEEeecCC
Q psy6859 238 NKTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 238 ~~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
...+.+++|+|+|++|++++.++
T Consensus 294 -~~~~~~~~~s~dg~~l~~~~~~~ 316 (349)
T 1jmx_B 294 -DHTYYCVAFDKKGDKLYLGGTFN 316 (349)
T ss_dssp -SSCCCEEEECSSSSCEEEESBSS
T ss_pred -CCCccceEECCCCCEEEEecCCC
Confidence 34577999999999988876553
No 146
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=1.8e-22 Score=168.81 Aligned_cols=239 Identities=9% Similarity=-0.025 Sum_probs=161.4
Q ss_pred CCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccce------------------eEEEEeeCCCEEE
Q psy6859 2 HRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVI------------------HSICTNYNGTLLC 62 (261)
Q Consensus 2 H~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v------------------~~~~~~~~~~~l~ 62 (261)
|...+..++||| ++.|+.++. +.|++|++.++ +.......+...+ .+++|+|||++|+
T Consensus 112 ~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g--~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la 188 (723)
T 1xfd_A 112 SNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGK--QAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLA 188 (723)
T ss_dssp CSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSS--CCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEE
T ss_pred ccccccccEECCCCCEEEEEEC-CeEEEEECCCC--ceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEE
Confidence 445588899999 889998886 79999999876 3444444333322 7899999999999
Q ss_pred EEeCCC----------------------------------cEEEEEccccceeeeeecc------CcceeEEEEeecCCc
Q psy6859 63 TVASDK----------------------------------AMKVFDVINFDMINMIKLD------FTPLTVECIHYLGDA 102 (261)
Q Consensus 63 s~~~dg----------------------------------~v~~wd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 102 (261)
+++.|+ .|++||+.+++....+..+ ........++++++.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~ 268 (723)
T 1xfd_A 189 YAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKV 268 (723)
T ss_dssp EEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEE
T ss_pred EEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeE
Confidence 987553 7999999888755555432 334566788898876
Q ss_pred eeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceE----EEEEEeCCCCceEEEEecCCC------eEEEEEccCCCc
Q psy6859 103 IPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTV----ECIHYLGDAIPTAAVSDQDSS------HVHIYDCKGNGT 172 (261)
Q Consensus 103 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~d~------~i~i~d~~~~~~ 172 (261)
++.....+..+..|.+||+.+++....+.... ...+ ..+.|+|++..+++++...++ .|.+||....+.
T Consensus 269 l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~ 347 (723)
T 1xfd_A 269 AVTWLNRAQNVSILTLCDATTGVCTKKHEDES-EAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSS 347 (723)
T ss_dssp EEEEEETTSCEEEEEEEETTTCCEEEEEEEEC-SSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSS
T ss_pred EEEEEcCCCCeEEEEEEeCCCCcceEEEEecc-CCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCC
Confidence 64442223345789999999988766554321 1122 367999999985555466677 577777321333
Q ss_pred c--ceeeccCcccCeEE-EEEcCCCCEEEEEcC-C--CeEEEeecccccccCCeeeeeecccccceeecCC---Ccccee
Q psy6859 173 P--LHVLDRLHTKPVVL-IKFNPIYQVVVSVDK-A--GILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK---NKTYPS 243 (261)
Q Consensus 173 ~--~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~ 243 (261)
. ...+. .+...+.. ++|+|+|+.|+..+. + +.+++|++... .......+.. |...+.
T Consensus 348 ~~~~~~l~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~-------------~~~~~~~l~~~~~~~~~~~ 413 (723)
T 1xfd_A 348 NDNIQSIT-SGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV-------------GNFNRQCLSCDLVENCTYF 413 (723)
T ss_dssp SCCCCBSC-CSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS-------------TTCCCBCSSTTSSSSCCCC
T ss_pred ccceeEee-cCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC-------------CCCCcceecccccCCCCeE
Confidence 1 55554 34444554 699999998865554 4 78999998531 1112233332 567788
Q ss_pred eeeECCCCceEEEee
Q psy6859 244 GLSFSPDGNKFVTIS 258 (261)
Q Consensus 244 ~~~~s~~~~~l~s~~ 258 (261)
.++|+|||++|+...
T Consensus 414 ~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 414 SASFSHSMDFFLLKC 428 (723)
T ss_dssp EEEECTTSSEEEEEC
T ss_pred EEEECCCCCEEEEEc
Confidence 999999999888653
No 147
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.91 E-value=6.8e-21 Score=146.62 Aligned_cols=236 Identities=11% Similarity=0.128 Sum_probs=157.1
Q ss_pred CCeEEEEEcC-CCeEEEecCC----CeEEEEeccC--CceeeeEEeeccccceeEEEEeeCCCEEEEEe-CCCcEEEEEc
Q psy6859 4 SPITHVVVTK-TDFVITASND----GHIKFWKKQE--EGIEFVKHFRSHLGVIHSICTNYNGTLLCTVA-SDKAMKVFDV 75 (261)
Q Consensus 4 ~~v~~~~~~~-~~~l~s~~~d----~~i~iw~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~v~~wd~ 75 (261)
.....++|+| +++|++++.+ +.|.+|+++. +..+.+.....+......+++ ++++|++++ .++.+.+|++
T Consensus 50 ~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~ 127 (361)
T 3scy_A 50 ANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPI 127 (361)
T ss_dssp SCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEB
T ss_pred CCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEe
Confidence 4566789999 8888888875 7999999876 333444455545556677777 777777776 5789999999
Q ss_pred cccceeeeee----cc----------CcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCce------e------eE
Q psy6859 76 INFDMINMIK----LD----------FTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDM------I------NM 129 (261)
Q Consensus 76 ~~~~~~~~~~----~~----------~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~------~------~~ 129 (261)
.....+..+. .. ......+.++++++.++.. ...++.|.+|++..... + ..
T Consensus 128 ~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~---~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~ 204 (361)
T 3scy_A 128 GQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLAD---DLGTDQIHKFNINPNANADNKEKFLTKGTPEA 204 (361)
T ss_dssp CTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEE---ETTTTEEEEEEECTTCCTTTCCCCEEEEEEEE
T ss_pred CCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEE---eCCCCEEEEEEEcCCCCcccccceeecccccc
Confidence 7543332211 10 1112557888888866554 35688999999875432 1 12
Q ss_pred EeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCcc--ceeec--cCcccCeEEEEEcCCCCEEEEEcC--C
Q psy6859 130 IKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTP--LHVLD--RLHTKPVVLIKFNPIYQVVVSVDK--A 203 (261)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~--~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~--d 203 (261)
.... .......++|+|++.+ ++++...++.|.+||+. +++. +..+. ..+...+..++|+|||++|+++.. +
T Consensus 205 ~~~~-~~~~~~~~~~spdg~~-l~v~~~~~~~v~v~~~~-~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~ 281 (361)
T 3scy_A 205 FKVA-PGSGPRHLIFNSDGKF-AYLINEIGGTVIAFRYA-DGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKA 281 (361)
T ss_dssp EECC-TTCCEEEEEECTTSSE-EEEEETTTCEEEEEEEE-TTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSS
T ss_pred eecC-CCCCCeEEEEcCCCCE-EEEEcCCCCeEEEEEec-CCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCC
Confidence 2222 2335678999999985 34555568999999998 6643 22232 133455789999999998866654 5
Q ss_pred CeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeec
Q psy6859 204 GILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISM 259 (261)
Q Consensus 204 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 259 (261)
+.|.+|++.... ...+.+..+.. ...+..++|+|||++|++++.
T Consensus 282 ~~i~v~~~~~~~-----------g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~ 325 (361)
T 3scy_A 282 DGVAIFKVDETN-----------GTLTKVGYQLT-GIHPRNFIITPNGKYLLVACR 325 (361)
T ss_dssp CEEEEEEECTTT-----------CCEEEEEEEEC-SSCCCEEEECTTSCEEEEEET
T ss_pred CEEEEEEEcCCC-----------CcEEEeeEecC-CCCCceEEECCCCCEEEEEEC
Confidence 899999985210 01123333333 456789999999999988874
No 148
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.91 E-value=8.8e-22 Score=149.84 Aligned_cols=219 Identities=12% Similarity=0.109 Sum_probs=156.5
Q ss_pred CeEEEecCCCeEEEEeccCCceeeeEEeecccc--ceeEEEEeeCCCEEE-EEeCCCcEEEEEccccceeeeeeccC---
Q psy6859 15 DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLG--VIHSICTNYNGTLLC-TVASDKAMKVFDVINFDMINMIKLDF--- 88 (261)
Q Consensus 15 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~-s~~~dg~v~~wd~~~~~~~~~~~~~~--- 88 (261)
+++++++.++.|.+||..+. +.+..+..... .+..++|+|++++++ ++..++.|.+||+.+++.+..+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~ 79 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKM--AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTT--EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred cEEEEcCCCCeEEEEECCCC--cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc
Confidence 47899999999999999887 66666653221 578999999997664 55567899999999998887766432
Q ss_pred --cceeEEEEeecCCceeeeeeec----C----CCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecC
Q psy6859 89 --TPLTVECIHYLGDAIPTAAVSD----Q----DSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD 158 (261)
Q Consensus 89 --~~~~~~~~~~~~~~~~~~~~s~----~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (261)
.....+.++++++.++...... . .++.|.+||+.+++.+..+.... .+..+.|+|++.+ ++++
T Consensus 80 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~--l~~~-- 152 (337)
T 1pby_B 80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR---QITMLAWARDGSK--LYGL-- 152 (337)
T ss_dssp EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS---SCCCEEECTTSSC--EEEE--
T ss_pred ccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCC---CcceeEECCCCCE--EEEe--
Confidence 1234567788887776651100 0 47999999999988777776532 4567889999986 3333
Q ss_pred CCeEEEEEccCCCccceeecc-----------------------------------------------------------
Q psy6859 159 SSHVHIYDCKGNGTPLHVLDR----------------------------------------------------------- 179 (261)
Q Consensus 159 d~~i~i~d~~~~~~~~~~~~~----------------------------------------------------------- 179 (261)
++.|++||+. +++.+..+..
T Consensus 153 ~~~i~~~d~~-~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 231 (337)
T 1pby_B 153 GRDLHVMDPE-AGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM 231 (337)
T ss_dssp SSSEEEEETT-TTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE
T ss_pred CCeEEEEECC-CCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc
Confidence 5789999987 6555433320
Q ss_pred ------CcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCce
Q psy6859 180 ------LHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNK 253 (261)
Q Consensus 180 ------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 253 (261)
.+...+.+++|+|++++|+++ ++.|.+||+.+ ++.+..+.. ...+.+++|+|+|++
T Consensus 232 ~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~---------------~~~~~~~~~-~~~~~~~~~s~dg~~ 293 (337)
T 1pby_B 232 AMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEK---------------NASIKRVPL-PHSYYSVNVSTDGST 293 (337)
T ss_dssp EEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTT---------------TEEEEEEEC-SSCCCEEEECTTSCE
T ss_pred eEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCC---------------CcCcceecC-CCceeeEEECCCCCE
Confidence 011234568999999988887 68999999854 444444432 346789999999999
Q ss_pred EEEeecCC
Q psy6859 254 FVTISMDR 261 (261)
Q Consensus 254 l~s~~~Dg 261 (261)
|++++.|+
T Consensus 294 l~~~~~~~ 301 (337)
T 1pby_B 294 VWLGGALG 301 (337)
T ss_dssp EEEESBSS
T ss_pred EEEEcCCC
Confidence 98887654
No 149
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.91 E-value=1.1e-22 Score=176.18 Aligned_cols=222 Identities=10% Similarity=0.072 Sum_probs=169.7
Q ss_pred CeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeec-----------cccceeEEEEe-eCCCEEEEEeCCCcEE
Q psy6859 5 PITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRS-----------HLGVIHSICTN-YNGTLLCTVASDKAMK 71 (261)
Q Consensus 5 ~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~-----------~~~~v~~~~~~-~~~~~l~s~~~dg~v~ 71 (261)
.+..++|+| ++.|+.+ .++.|.+|+.... . +..+.. |...+..++|+ |||++|++++ ++.+.
T Consensus 246 ~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~--~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~ 320 (1045)
T 1k32_A 246 DYYPRHLNTDGRRILFS-KGGSIYIFNPDTE--K-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAF 320 (1045)
T ss_dssp SSCEEEEEESSSCEEEE-ETTEEEEECTTTC--C-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEE
T ss_pred CcceeeEcCCCCEEEEE-eCCEEEEecCCce--E-eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEE
Confidence 456789999 8888877 4899999998543 2 224443 44579999999 9999999887 78999
Q ss_pred EEEccccceeeeeeccCc-ceeEEEEeecCCceeeeeeecCCCCeEE-EEEcCCCceeeEEeecCCcceEEEEEEeCCCC
Q psy6859 72 VFDVINFDMINMIKLDFT-PLTVECIHYLGDAIPTAAVSDQDSSRVH-IYDCKGNDMINMIKLDFTPLTVECIHYLGDAI 149 (261)
Q Consensus 72 ~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~d~~i~-i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (261)
+|++..++... +..+.. ......++ +++.++.+ +.+..+. +||+.+++... +. .+...+..++|+|++.
T Consensus 321 ~~~~~~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~----s~~~~l~~~~d~~~~~~~~-l~--~~~~~~~~~~~SpDG~ 391 (1045)
T 1k32_A 321 IQDVSGTYVLK-VPEPLRIRYVRRGGD-TKVAFIHG----TREGDFLGIYDYRTGKAEK-FE--ENLGNVFAMGVDRNGK 391 (1045)
T ss_dssp EECTTSSBEEE-CSCCSCEEEEEECSS-SEEEEEEE----ETTEEEEEEEETTTCCEEE-CC--CCCCSEEEEEECTTSS
T ss_pred EEcCCCCceEE-ccCCCcceEEeeeEc-CCCeEEEE----ECCCceEEEEECCCCCceE-ec--CCccceeeeEECCCCC
Confidence 99998776544 332333 44555566 66666655 4577888 89998776443 22 3445788999999998
Q ss_pred ceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCC----------eEEEeecccccccCC
Q psy6859 150 PTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAG----------ILEYWSGYKQEFKFP 219 (261)
Q Consensus 150 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----------~i~iwd~~~~~~~~~ 219 (261)
. +++++.++.|++||+. +++....+. .|...+.+++|+|||++|++++.++ .|++||+.+
T Consensus 392 ~--la~~~~~~~v~~~d~~-tg~~~~~~~-~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~------ 461 (1045)
T 1k32_A 392 F--AVVANDRFEIMTVDLE-TGKPTVIER-SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG------ 461 (1045)
T ss_dssp E--EEEEETTSEEEEEETT-TCCEEEEEE-CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT------
T ss_pred E--EEEECCCCeEEEEECC-CCceEEecc-CCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC------
Confidence 6 6777889999999998 887777776 7888899999999999998877644 899999853
Q ss_pred eeeeeecccccceeecCCCccceeeeeECCCCceEEEeecC
Q psy6859 220 KCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMD 260 (261)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~D 260 (261)
++ +..+..|...+..++|+|||++|++++.+
T Consensus 462 ---------g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~ 492 (1045)
T 1k32_A 462 ---------RK-IFAATTENSHDYAPAFDADSKNLYYLSYR 492 (1045)
T ss_dssp ---------TE-EEECSCSSSBEEEEEECTTSCEEEEEESC
T ss_pred ---------Cc-EEEeeCCCcccCCceEcCCCCEEEEEecc
Confidence 33 56677788888999999999999988764
No 150
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.91 E-value=2e-21 Score=148.20 Aligned_cols=225 Identities=9% Similarity=0.144 Sum_probs=149.0
Q ss_pred eEEEecCCCeEEEEeccC-CceeeeEEeeccccceeEEEEeeCCCEEEEEeCC-CcEEEEEcc--ccc--eeeeeeccCc
Q psy6859 16 FVITASNDGHIKFWKKQE-EGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASD-KAMKVFDVI--NFD--MINMIKLDFT 89 (261)
Q Consensus 16 ~l~s~~~d~~i~iw~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-g~v~~wd~~--~~~--~~~~~~~~~~ 89 (261)
.+++++.|+.|++|+++. +..+.+..+ .+...+.+++|+|++++|++++.+ +.|.+|++. +++ .+..+....
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~- 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG- 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-
Confidence 445558899999999963 222344444 367789999999999999888876 899999997 444 334444333
Q ss_pred ceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCC---ceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEE
Q psy6859 90 PLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGN---DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYD 166 (261)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d 166 (261)
....+.++++++.+++. +..++.|.+||+..+ +.+..+.. ...+.+++|+|++..+ ++++..++.|++||
T Consensus 85 ~~~~~~~s~dg~~l~~~---~~~~~~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~~s~dg~~l-~~~~~~~~~v~~~d 157 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVG---SYNAGNVSVTRLEDGLPVGVVDVVEG---LDGCHSANISPDNRTL-WVPALKQDRICLFT 157 (343)
T ss_dssp CCSEEEECTTSSEEEEE---ETTTTEEEEEEEETTEEEEEEEEECC---CTTBCCCEECTTSSEE-EEEEGGGTEEEEEE
T ss_pred CCcEEEEcCCCCEEEEE---ecCCCeEEEEECCCCccccccccccC---CCCceEEEECCCCCEE-EEecCCCCEEEEEE
Confidence 45667788888866554 245899999999533 33333332 2346789999999853 44444789999999
Q ss_pred ccCC-Cccce----eeccCcccCeEEEEEcCCCCEEE-EEcCCCeEEEeecccccccCCeeeeeecccccceeecCC---
Q psy6859 167 CKGN-GTPLH----VLDRLHTKPVVLIKFNPIYQVVV-SVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK--- 237 (261)
Q Consensus 167 ~~~~-~~~~~----~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 237 (261)
+. . ++... .+.......+..++|+|++++|+ ++..++.|.+|++....... .....+..+..
T Consensus 158 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~--------~~~~~~~~~~~~~~ 228 (343)
T 1ri6_A 158 VS-DDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNI--------ECVQTLDMMPENFS 228 (343)
T ss_dssp EC-TTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCC--------EEEEEEECSCTTCC
T ss_pred ec-CCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcE--------EEEeeccccCcccc
Confidence 98 5 54332 22212345788999999999775 44588999999985311000 00011111111
Q ss_pred CccceeeeeECCCCceEEEee
Q psy6859 238 NKTYPSGLSFSPDGNKFVTIS 258 (261)
Q Consensus 238 ~~~~v~~~~~s~~~~~l~s~~ 258 (261)
....+..++|+|+|++|+++.
T Consensus 229 ~~~~~~~i~~s~dg~~l~v~~ 249 (343)
T 1ri6_A 229 DTRWAADIHITPDGRHLYACD 249 (343)
T ss_dssp SCCCEEEEEECTTSSEEEEEE
T ss_pred ccCCccceEECCCCCEEEEEe
Confidence 134567899999999887544
No 151
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.91 E-value=2.9e-22 Score=167.13 Aligned_cols=235 Identities=11% Similarity=0.073 Sum_probs=161.4
Q ss_pred CCCCeEEEEEcC-CCeEEEecCCCeEEEEeccC-----CceeeeEEeeccccc--------------eeEEEEeeCCCEE
Q psy6859 2 HRSPITHVVVTK-TDFVITASNDGHIKFWKKQE-----EGIEFVKHFRSHLGV--------------IHSICTNYNGTLL 61 (261)
Q Consensus 2 H~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~-----~~~~~~~~~~~~~~~--------------v~~~~~~~~~~~l 61 (261)
|...+.+++|+| ++.|+++ .|+.|++|++.+ + +.......+... +.++.|+|||++|
T Consensus 119 ~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g--~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~l 195 (706)
T 2z3z_A 119 TNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMS--RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCL 195 (706)
T ss_dssp CTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCC--CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEE
T ss_pred CcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCC--CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEE
Confidence 456678899999 8888885 679999999987 5 333333333332 4899999999999
Q ss_pred EEEe---------------------------------CCCcEEEEEccccceeeeee--ccCcceeEEEEeecCCceeee
Q psy6859 62 CTVA---------------------------------SDKAMKVFDVINFDMINMIK--LDFTPLTVECIHYLGDAIPTA 106 (261)
Q Consensus 62 ~s~~---------------------------------~dg~v~~wd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 106 (261)
++++ .+..|++||+.+++...... .+........++++++.++..
T Consensus 196 a~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~ 275 (706)
T 2z3z_A 196 AFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVA 275 (706)
T ss_dssp EEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEE
T ss_pred EEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEE
Confidence 9987 34679999998887554432 223445677888999877765
Q ss_pred eeec-CCCCeEEEEEcCCCceeeEEeecCCcc---eEEEEEEeC--CCCceEEEEecCCCeEEEEEccCCCccceeeccC
Q psy6859 107 AVSD-QDSSRVHIYDCKGNDMINMIKLDFTPL---TVECIHYLG--DAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRL 180 (261)
Q Consensus 107 ~~s~-~~d~~i~i~d~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~ 180 (261)
.... .....|.+||+.+++....+....... .+..+.|+| ++.. ++++..++.+++|++...+..+..+. .
T Consensus 276 ~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~--l~~~~~~g~~~l~~~~~~~~~~~~l~-~ 352 (706)
T 2z3z_A 276 EVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQF--IWQSRRDGWNHLYLYDTTGRLIRQVT-K 352 (706)
T ss_dssp EECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEE--EEEECTTSSCEEEEEETTSCEEEECC-C
T ss_pred EeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEE--EEEEccCCccEEEEEECCCCEEEecC-C
Confidence 2110 112389999999984333332211111 235678999 8863 67778889999998864566677776 6
Q ss_pred cccCeEE-EEEcCCCCEEEEE-cCCC----eEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceE
Q psy6859 181 HTKPVVL-IKFNPIYQVVVSV-DKAG----ILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKF 254 (261)
Q Consensus 181 ~~~~v~~-~~~~~~~~~l~~~-~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 254 (261)
+...+.. ++|+|+++.|+.+ ..++ .|..||+.+ ++ ...+. |...+.+++|||||++|
T Consensus 353 ~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~---------------~~-~~~l~-~~~~~~~~~~spdg~~l 415 (706)
T 2z3z_A 353 GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKG---------------GK-TKDLT-PESGMHRTQLSPDGSAI 415 (706)
T ss_dssp SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTC---------------CC-CEESC-CSSSEEEEEECTTSSEE
T ss_pred CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCC---------------CC-ceecc-CCCceEEEEECCCCCEE
Confidence 7777877 7999999977554 4444 555556532 22 23333 56678999999999998
Q ss_pred EEeec
Q psy6859 255 VTISM 259 (261)
Q Consensus 255 ~s~~~ 259 (261)
+..+.
T Consensus 416 ~~~~~ 420 (706)
T 2z3z_A 416 IDIFQ 420 (706)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 87643
No 152
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.90 E-value=8.2e-23 Score=170.75 Aligned_cols=220 Identities=8% Similarity=0.048 Sum_probs=154.0
Q ss_pred EEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeecccc---ceeEEEEeeCCCEEEEEeC---------CCcEEEEE
Q psy6859 8 HVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLG---VIHSICTNYNGTLLCTVAS---------DKAMKVFD 74 (261)
Q Consensus 8 ~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~s~~~---------dg~v~~wd 74 (261)
.++|+| ++ ++..+.|++|++|++.++ +....+.+|.. .+.+++|+|||++|++++. ++.|++||
T Consensus 20 ~~~~s~dg~-~~~~~~d~~i~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d 96 (719)
T 1z68_A 20 FPNWISGQE-YLHQSADNNIVLYNIETG--QSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYD 96 (719)
T ss_dssp CCEESSSSE-EEEECTTSCEEEEESSSC--CEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred ccEECCCCe-EEEEcCCCCEEEEEcCCC--cEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEE
Confidence 678999 75 444556999999999987 55555555543 3899999999999998876 78999999
Q ss_pred ccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceE---------------
Q psy6859 75 VINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTV--------------- 139 (261)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~--------------- 139 (261)
+.+++.+...... .......++|+++.++.+ .++.|++||+.+++...... ......+
T Consensus 97 ~~~g~~~~~~~l~-~~~~~~~~SPDG~~la~~-----~~~~i~~~~~~~g~~~~l~~-~~~~~~v~~g~~~~v~~ee~~~ 169 (719)
T 1z68_A 97 LSNGEFVRGNELP-RPIQYLCWSPVGSKLAYV-----YQNNIYLKQRPGDPPFQITF-NGRENKIFNGIPDWVYEEEMLA 169 (719)
T ss_dssp TTTTEECCSSCCC-SSBCCEEECSSTTCEEEE-----ETTEEEEESSTTSCCEECCC-CCBTTTEEESSCCHHHHHHTTC
T ss_pred CCCCccccceecC-cccccceECCCCCEEEEE-----ECCeEEEEeCCCCCcEEEec-CCCcCCeEcccccceeeeeccc
Confidence 9988763211222 345678899999988776 47899999998886644321 1111111
Q ss_pred --EEEEEeCCCCceEEEEecCC----------------------------------CeEEEEEccCCCccc--------e
Q psy6859 140 --ECIHYLGDAIPTAAVSDQDS----------------------------------SHVHIYDCKGNGTPL--------H 175 (261)
Q Consensus 140 --~~~~~~~~~~~~~~~~~~~d----------------------------------~~i~i~d~~~~~~~~--------~ 175 (261)
..+.|+||+.. ++.++.| ..|++||+. +++.. .
T Consensus 170 ~~~~~~wSPDG~~--la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~-~~~~~~~~~~~~~~ 246 (719)
T 1z68_A 170 TKYALWWSPNGKF--LAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTT-YPAYVGPQEVPVPA 246 (719)
T ss_dssp SSCCEEECTTSSE--EEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESS-CHHHHCCEECCCCH
T ss_pred CcccEEECCCCCE--EEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECC-CCCccceeEccCCc
Confidence 47999999987 4433322 178899997 66543 1
Q ss_pred eeccCcccCeEEEEEcCCCCEEEEEcC--C--CeEEEee----cccccccCCeeeeeecccccceeec----CCCcccee
Q psy6859 176 VLDRLHTKPVVLIKFNPIYQVVVSVDK--A--GILEYWS----GYKQEFKFPKCVHFESKLDTDLFEF----AKNKTYPS 243 (261)
Q Consensus 176 ~~~~~~~~~v~~~~~~~~~~~l~~~~~--d--g~i~iwd----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~ 243 (261)
.+. .|...+..++|+||++++++... + ..|.+|| +.+ +++...+ .+|...+.
T Consensus 247 ~~~-~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~---------------g~~~~~~~~~~~~~~~~~~ 310 (719)
T 1z68_A 247 MIA-SSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQT---------------WDCPKTQEHIEESRTGWAG 310 (719)
T ss_dssp HHH-TSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSS---------------EECCGGGEEEEECSSSCSS
T ss_pred cCC-CCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCC---------------CceEEEEecccccCCceEc
Confidence 233 57788999999999887776432 2 2477888 533 3333334 35667776
Q ss_pred -----eeeECCCCceEEE
Q psy6859 244 -----GLSFSPDGNKFVT 256 (261)
Q Consensus 244 -----~~~~s~~~~~l~s 256 (261)
.+.|+|||+.|+.
T Consensus 311 ~~~~~~~~~spdg~~l~~ 328 (719)
T 1z68_A 311 GFFVSTPVFSYDAISYYK 328 (719)
T ss_dssp SSSCCCCEECTTSSCEEE
T ss_pred cccCCccEECCCCCeEEE
Confidence 8999999997665
No 153
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.90 E-value=2.2e-22 Score=158.15 Aligned_cols=190 Identities=8% Similarity=0.009 Sum_probs=138.5
Q ss_pred cceeEEEEeeCCCEEEEEeCCCcEEEEEccccce----------ee------eeeccCcceeEEEEeecCCceeeeeeec
Q psy6859 47 GVIHSICTNYNGTLLCTVASDKAMKVFDVINFDM----------IN------MIKLDFTPLTVECIHYLGDAIPTAAVSD 110 (261)
Q Consensus 47 ~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~----------~~------~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 110 (261)
..++.+++++++.++++++.++ +++|+...... +. .+. ....+..+.++++++.++.+..++
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVP-MKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEEC-CSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCcccccc-CCCcccEEEEcCCCCEEEEEEecc
Confidence 4578999999999999999887 89988642111 10 111 123477788888888776432256
Q ss_pred CCCCeEEEEEcCCC--------ceeeEEe-ecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCc
Q psy6859 111 QDSSRVHIYDCKGN--------DMINMIK-LDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLH 181 (261)
Q Consensus 111 ~~d~~i~i~d~~~~--------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 181 (261)
+.|+.|++||+++. +.+..+. ...+...+.+++|+|+... ++++++.|++|++||++ ++..+.... .|
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~-~las~s~Dg~v~iwD~~-~~~~~~~~~-~~ 191 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS-MVAVCLADGSIAVLQVT-ETVKVCATL-PS 191 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT-EEEEEETTSCEEEEEES-SSEEEEEEE-CG
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC-EEEEEECCCeEEEEEcC-CCcceeecc-CC
Confidence 89999999998754 2222222 2235668999999998432 38888999999999999 666555554 78
Q ss_pred ccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecC-------CCccceeeeeECCCCceE
Q psy6859 182 TKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFA-------KNKTYPSGLSFSPDGNKF 254 (261)
Q Consensus 182 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l 254 (261)
...|++++|+|+|++|++|+.||.|++||++. +....+. .|...|.+++|++++.++
T Consensus 192 ~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~----------------~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l 255 (434)
T 2oit_A 192 TVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTL----------------QEKKVIPCPPFYESDHPVRVLDVLWIGTYVFA 255 (434)
T ss_dssp GGCEEEEEECTTSSCEEEEETTSCEEEECTTC----------------CEEEEECCCTTCCTTSCEEEEEEEEEETTEEE
T ss_pred CCceeEEEEcCCCCEEEEEcCCCcEEEEccCC----------------cccccccCCcccCCCCceeEEEEEEecCceEE
Confidence 99999999999999999999999999999851 1111121 244589999999998887
Q ss_pred EEe
Q psy6859 255 VTI 257 (261)
Q Consensus 255 ~s~ 257 (261)
++.
T Consensus 256 ~~~ 258 (434)
T 2oit_A 256 IVY 258 (434)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 154
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.89 E-value=1.1e-21 Score=169.81 Aligned_cols=227 Identities=11% Similarity=0.051 Sum_probs=171.8
Q ss_pred CCCCCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccce
Q psy6859 1 MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDM 80 (261)
Q Consensus 1 gH~~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~ 80 (261)
+|...+.++.|+++.++++++.|+.+.||.++..+ .....+..|. .+...+|+|||++|+.+ .++.|.+||+... .
T Consensus 201 ~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g-~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~-~ 276 (1045)
T 1k32_A 201 DMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDG-KDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTE-K 276 (1045)
T ss_dssp CCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTS-CSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTC-C
T ss_pred CCCCcccceEEeCCEEEEEEeccCceEEEEEeCCC-CcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCce-E
Confidence 58889999999988677788889999999876422 2334555554 46778999999998887 5889999998443 3
Q ss_pred eeeeecc-----------CcceeEEEEe-ecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcc-eEEEEEEeCC
Q psy6859 81 INMIKLD-----------FTPLTVECIH-YLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPL-TVECIHYLGD 147 (261)
Q Consensus 81 ~~~~~~~-----------~~~~~~~~~~-~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 147 (261)
+..+..+ ........++ ++++.++.. + ++.+.+|++.+++... + ..++. .+..+.|+ +
T Consensus 277 l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~----~-~~~i~~~~~~~~~~~~-~--~~~~~~~~~~~~~s-d 347 (1045)
T 1k32_A 277 IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFV----S-RGQAFIQDVSGTYVLK-V--PEPLRIRYVRRGGD-T 347 (1045)
T ss_dssp EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEE----E-TTEEEEECTTSSBEEE-C--SCCSCEEEEEECSS-S
T ss_pred eeeeccCcccccccccccccccceeeecCCCCCEEEEE----E-cCEEEEEcCCCCceEE-c--cCCCcceEEeeeEc-C
Confidence 3333321 1245678888 999888776 2 8899999998876443 2 22344 78899999 8
Q ss_pred CCceEEEEecCCCeEE-EEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeec
Q psy6859 148 AIPTAAVSDQDSSHVH-IYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFES 226 (261)
Q Consensus 148 ~~~~~~~~~~~d~~i~-i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 226 (261)
+.. ++.++.++.+. +||+. .++ ...+. .|...+..++|+|||++|++++.++.|++||+.+
T Consensus 348 g~~--l~~~s~~~~l~~~~d~~-~~~-~~~l~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~t------------- 409 (1045)
T 1k32_A 348 KVA--FIHGTREGDFLGIYDYR-TGK-AEKFE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET------------- 409 (1045)
T ss_dssp EEE--EEEEETTEEEEEEEETT-TCC-EEECC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTT-------------
T ss_pred CCe--EEEEECCCceEEEEECC-CCC-ceEec-CCccceeeeEECCCCCEEEEECCCCeEEEEECCC-------------
Confidence 865 55555577888 89987 544 34554 6778899999999999999999999999999954
Q ss_pred ccccceeecCCCccceeeeeECCCCceEEEeecC
Q psy6859 227 KLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMD 260 (261)
Q Consensus 227 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~D 260 (261)
++......+|...+.+++|||||++|++++.+
T Consensus 410 --g~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~ 441 (1045)
T 1k32_A 410 --GKPTVIERSREAMITDFTISDNSRFIAYGFPL 441 (1045)
T ss_dssp --CCEEEEEECSSSCCCCEEECTTSCEEEEEEEE
T ss_pred --CceEEeccCCCCCccceEECCCCCeEEEEecC
Confidence 45555555788899999999999999988753
No 155
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.89 E-value=3.1e-20 Score=143.18 Aligned_cols=236 Identities=8% Similarity=-0.035 Sum_probs=155.2
Q ss_pred CCeEEEEEcC-CCeEEEecCCCeEEEEecc-CCceeeeEEeec-cccceeEEEEeeCCCE--EEEEe-------------
Q psy6859 4 SPITHVVVTK-TDFVITASNDGHIKFWKKQ-EEGIEFVKHFRS-HLGVIHSICTNYNGTL--LCTVA------------- 65 (261)
Q Consensus 4 ~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~-~~~~~~~~~~~~-~~~~v~~~~~~~~~~~--l~s~~------------- 65 (261)
..+..++|+| +++|++++.+ .|.+|++. ++ +....... ..+.+..++|+|++++ +++++
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g--~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPT--EIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETT--EEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCC--CEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 3577899999 8888888887 99999997 55 33322221 1133567899999984 45553
Q ss_pred CCCcEEEEEcc-ccceeeeeec----cCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcC-CCceee--EEeecCCcc
Q psy6859 66 SDKAMKVFDVI-NFDMINMIKL----DFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCK-GNDMIN--MIKLDFTPL 137 (261)
Q Consensus 66 ~dg~v~~wd~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~-~~~~~~--~~~~~~~~~ 137 (261)
.++.+.+|++. +++....+.. .......+.++++++.+++. ...++.|.+||+. +++... .+....+..
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~---~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~ 193 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA---DLTANKLWTHRKLASGEVELVGSVDAPDPGD 193 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE---ETTTTEEEEEEECTTSCEEEEEEEECSSTTC
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE---cCCCCEEEEEEECCCCCEEEeeeEecCCCCC
Confidence 68999999997 4655444332 23345677888998876543 2356899999998 665432 222211234
Q ss_pred eEEEEEEeCCCCceEEEEecCCCeEEEEEccC-CCccc---e---eecc---Cccc------CeEEEE-EcCCCCEEEEE
Q psy6859 138 TVECIHYLGDAIPTAAVSDQDSSHVHIYDCKG-NGTPL---H---VLDR---LHTK------PVVLIK-FNPIYQVVVSV 200 (261)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-~~~~~---~---~~~~---~~~~------~v~~~~-~~~~~~~l~~~ 200 (261)
.+..++|+|++.++ +++...++.|.+|++.. +++.. . .+.. ++.. .+..++ |+|||++|+++
T Consensus 194 ~p~~~~~spdg~~l-~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~ 272 (365)
T 1jof_A 194 HPRWVAMHPTGNYL-YALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS 272 (365)
T ss_dssp CEEEEEECTTSSEE-EEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred CCCEeEECCCCCEE-EEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEE
Confidence 57899999999863 44445578999998752 34332 1 2210 1121 488999 99999988776
Q ss_pred cCC-C-----eEEEeecccccccCCeeeeeeccccccee---ecCCCccceeeeeECC---CCceEEEeecC
Q psy6859 201 DKA-G-----ILEYWSGYKQEFKFPKCVHFESKLDTDLF---EFAKNKTYPSGLSFSP---DGNKFVTISMD 260 (261)
Q Consensus 201 ~~d-g-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~s~---~~~~l~s~~~D 260 (261)
..+ . .|.+|++.. +++... ....+...+..++|+| ||++|++++.+
T Consensus 273 ~~~~~~~~~~~i~v~~~~~--------------~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~ 330 (365)
T 1jof_A 273 SRANKFELQGYIAGFKLRD--------------CGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ 330 (365)
T ss_dssp EEESSTTSCCEEEEEEECT--------------TSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS
T ss_pred CCCCCCCCCCeEEEEEECC--------------CCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcC
Confidence 533 2 899999852 122221 1223445677899999 89999998764
No 156
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.88 E-value=1.3e-20 Score=143.31 Aligned_cols=192 Identities=9% Similarity=0.030 Sum_probs=145.0
Q ss_pred CeEEEEEcC-CCeEEEec------------CCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEE
Q psy6859 5 PITHVVVTK-TDFVITAS------------NDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMK 71 (261)
Q Consensus 5 ~v~~~~~~~-~~~l~s~~------------~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~ 71 (261)
.+.+++|+| +++++++. .++.|.+||+.+. +....+.. ...+.+++|+|++++++++ ++.|.
T Consensus 83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~--~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~ 157 (337)
T 1pby_B 83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL--SRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLH 157 (337)
T ss_dssp CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT--EEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEE
T ss_pred cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCC--cEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEE
Confidence 577899999 87888875 5799999999876 56666653 4567899999999988887 68899
Q ss_pred EEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCC-----------------------eEEEEEcCCCceee
Q psy6859 72 VFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS-----------------------RVHIYDCKGNDMIN 128 (261)
Q Consensus 72 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~-----------------------~i~i~d~~~~~~~~ 128 (261)
+||+.+++....+....... ...+++++..++.. +..++ .|.+||+.+++..
T Consensus 158 ~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~- 232 (337)
T 1pby_B 158 VMDPEAGTLVEDKPIQSWEA-ETYAQPDVLAVWNQ---HESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA- 232 (337)
T ss_dssp EEETTTTEEEEEECSTTTTT-TTBCCCBCCCCCCC---CTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-
T ss_pred EEECCCCcEeeeeeccccCC-CceeCCCccEEeee---ccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-
Confidence 99999998877766443111 12456676655433 12222 5789999998765
Q ss_pred EEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEE
Q psy6859 129 MIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEY 208 (261)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 208 (261)
.+........+..++|+|++.+ ++++ ++.|++||+. +++.+..+. ....+.+++|+|++++|++++.++.|.+
T Consensus 233 ~~~~~~~~~~~~~~~~s~dg~~--l~~~--~~~v~~~d~~-~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~i~v 305 (337)
T 1pby_B 233 MREVRIMDVFYFSTAVNPAKTR--AFGA--YNVLESFDLE-KNASIKRVP--LPHSYYSVNVSTDGSTVWLGGALGDLAA 305 (337)
T ss_dssp EEEEEECSSCEEEEEECTTSSE--EEEE--ESEEEEEETT-TTEEEEEEE--CSSCCCEEEECTTSCEEEEESBSSEEEE
T ss_pred EeecCCCCCceeeEEECCCCCE--EEEe--CCeEEEEECC-CCcCcceec--CCCceeeEEECCCCCEEEEEcCCCcEEE
Confidence 4444334456788999999986 4444 6899999998 888887775 3456789999999999988899999999
Q ss_pred eeccc
Q psy6859 209 WSGYK 213 (261)
Q Consensus 209 wd~~~ 213 (261)
||+.+
T Consensus 306 ~d~~~ 310 (337)
T 1pby_B 306 YDAET 310 (337)
T ss_dssp EETTT
T ss_pred EECcC
Confidence 99954
No 157
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.87 E-value=4.1e-19 Score=135.93 Aligned_cols=206 Identities=13% Similarity=0.115 Sum_probs=140.3
Q ss_pred CCCCeEEEEEcC-CCeEEEec-CCCeEEEEeccC-CceeeeEEeec---------cccceeEEEEeeCCCEEEEEeCCCc
Q psy6859 2 HRSPITHVVVTK-TDFVITAS-NDGHIKFWKKQE-EGIEFVKHFRS---------HLGVIHSICTNYNGTLLCTVASDKA 69 (261)
Q Consensus 2 H~~~v~~~~~~~-~~~l~s~~-~d~~i~iw~~~~-~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~s~~~dg~ 69 (261)
|...+..++|+| +++|++++ .++.|.+|++.. +....+..+.. +...+.+++|+|+++++++...++.
T Consensus 84 ~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~ 163 (347)
T 3hfq_A 84 PGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDK 163 (347)
T ss_dssp ESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTE
T ss_pred CCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCE
Confidence 345678899999 88777776 789999999963 32234444332 1124788999999996666667889
Q ss_pred EEEEEcc-ccceeee--eecc-CcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCC--CceeeEEeecCCc------c
Q psy6859 70 MKVFDVI-NFDMINM--IKLD-FTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKG--NDMINMIKLDFTP------L 137 (261)
Q Consensus 70 v~~wd~~-~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~--~~~~~~~~~~~~~------~ 137 (261)
|.+|++. +++.... +... ......+.++++++.++.. ...++.+.+|++.. ++..........+ .
T Consensus 164 v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~---~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~ 240 (347)
T 3hfq_A 164 VYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLA---GELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHN 240 (347)
T ss_dssp EEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEE---ETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCC
T ss_pred EEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEE---eCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCC
Confidence 9999998 4543322 2221 2234457888888865543 36789999999874 4432221211111 3
Q ss_pred eEEEEEEeCCCCceEEEEecCCCeEEEEEccCCC--ccceeeccCcccCeEEEEEcCCCCEEEEEcC-CCeEEEeecc
Q psy6859 138 TVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNG--TPLHVLDRLHTKPVVLIKFNPIYQVVVSVDK-AGILEYWSGY 212 (261)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~ 212 (261)
.+..++|+|++.+ ++++...++.|.+||+...+ +.+..+. .+...+..++|+|+|++|++++. ++.|.+|+++
T Consensus 241 ~~~~i~~spdG~~-l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 241 GAAAIRLSHDGHF-LYVSNRGYNTLAVFAVTADGHLTLIQQIS-TEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp EEEEEEECTTSCE-EEEEEETTTEEEEEEECGGGCEEEEEEEE-CSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred cceeEEECCCCCE-EEEEeCCCCEEEEEEECCCCcEEEeEEEe-cCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 5789999999986 34666678999999996232 3344454 45567889999999998877764 5899999653
No 158
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.87 E-value=2.5e-20 Score=156.16 Aligned_cols=235 Identities=7% Similarity=0.023 Sum_probs=156.0
Q ss_pred CCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccc-----eeEEEEeeCCCEEEEEeCC---------C
Q psy6859 4 SPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGV-----IHSICTNYNGTLLCTVASD---------K 68 (261)
Q Consensus 4 ~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~s~~~d---------g 68 (261)
....+++|+| +++++++ |++|++|++.++ +....+.+|... ...+.|+|||++|+.++.+ +
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYG--NSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTC--CEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCC--ceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence 4466899999 7777776 899999999987 455556666533 2347899999999998876 5
Q ss_pred cEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceE---------
Q psy6859 69 AMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTV--------- 139 (261)
Q Consensus 69 ~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~--------- 139 (261)
.+.+||+.+++... +..+........++|+|+.++.+ .++.|.+||+.+++..+ +........+
T Consensus 93 ~~~~~d~~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~-----~~~~i~~~~~~~~~~~~-lt~~g~~~~~~~g~~~~v~ 165 (740)
T 4a5s_A 93 SYDIYDLNKRQLIT-EERIPNNTQWVTWSPVGHKLAYV-----WNNDIYVKIEPNLPSYR-ITWTGKEDIIYNGITDWVY 165 (740)
T ss_dssp EEEEEETTTTEECC-SSCCCTTEEEEEECSSTTCEEEE-----ETTEEEEESSTTSCCEE-CCSCCBTTTEEESBCCHHH
T ss_pred EEEEEECCCCcEEE-cccCCCcceeeEECCCCCEEEEE-----ECCeEEEEECCCCceEE-EcCCCCccceecCcccccc
Confidence 66799999887654 33334457788899999988765 57899999998876443 2222121111
Q ss_pred --------EEEEEeCCCCceEEEEecC----------------------------------CCeEEEEEccCC---Cc--
Q psy6859 140 --------ECIHYLGDAIPTAAVSDQD----------------------------------SSHVHIYDCKGN---GT-- 172 (261)
Q Consensus 140 --------~~~~~~~~~~~~~~~~~~~----------------------------------d~~i~i~d~~~~---~~-- 172 (261)
..+.|+||+..+++.+... ...|++||+. + ++
T Consensus 166 ~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~-~~~~~~~~ 244 (740)
T 4a5s_A 166 EEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTD-SLSSVTNA 244 (740)
T ss_dssp HHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETT-SCCSSSCC
T ss_pred cchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECC-CCCCCCcc
Confidence 3488999998744332110 1158889987 5 52
Q ss_pred cceeecc-----CcccCeEEEEEcCCCCEEEEEc----CCCeEEEeecccccccCCeeeeeecccccceeec--CCCccc
Q psy6859 173 PLHVLDR-----LHTKPVVLIKFNPIYQVVVSVD----KAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEF--AKNKTY 241 (261)
Q Consensus 173 ~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 241 (261)
....+.. .+...+..++|+|||+.++... .+..|.+||+.+++... ....+..+ ..|...
T Consensus 245 ~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~---------~~~~~~~l~~~~~~~~ 315 (740)
T 4a5s_A 245 TSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRW---------NCLVARQHIEMSTTGW 315 (740)
T ss_dssp CEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEE---------EECGGGCEEEECSSSC
T ss_pred eEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCcccc---------ceeEEEEeeeccCCce
Confidence 2233331 2677899999999999665543 23479999986531000 00011112 345555
Q ss_pred ee-----eeeECCCCceEE-Eeec
Q psy6859 242 PS-----GLSFSPDGNKFV-TISM 259 (261)
Q Consensus 242 v~-----~~~~s~~~~~l~-s~~~ 259 (261)
|. .++|+|||+.|+ ..+.
T Consensus 316 v~~~~~~~p~fspDG~~l~~~~s~ 339 (740)
T 4a5s_A 316 VGRFRPSEPHFTLDGNSFYKIISN 339 (740)
T ss_dssp SSSSSCCCCEECTTSSEEEEEEEC
T ss_pred EccCcCCCceEcCCCCEEEEEEEc
Confidence 54 789999999887 6653
No 159
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.86 E-value=7.6e-19 Score=136.36 Aligned_cols=199 Identities=9% Similarity=0.017 Sum_probs=135.0
Q ss_pred EEEcC-CCeEEEecC-CC--eEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeee
Q psy6859 9 VVVTK-TDFVITASN-DG--HIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMI 84 (261)
Q Consensus 9 ~~~~~-~~~l~s~~~-d~--~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~ 84 (261)
.+|+| +++|+.++. ++ .|.+||+.++ +......++...+..+.|+||++.|+.++.++.|++||+.+++....+
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g--~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~ 118 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ--VATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVY 118 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTC--EEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCC--ceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeee
Confidence 78999 888888877 67 4777888776 555555666666667889999999999999999999999998876665
Q ss_pred eccCcceeE--EEEeecCCceeeeee------------------ecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEE
Q psy6859 85 KLDFTPLTV--ECIHYLGDAIPTAAV------------------SDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHY 144 (261)
Q Consensus 85 ~~~~~~~~~--~~~~~~~~~~~~~~~------------------s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 144 (261)
..+...... ..+++++..++.... ....+..|.+||+.+++....... ...+..+.|
T Consensus 119 ~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~---~~~~~~~~~ 195 (388)
T 3pe7_A 119 QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQE---NQWLGHPIY 195 (388)
T ss_dssp ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEE---SSCEEEEEE
T ss_pred echhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecC---CccccccEE
Confidence 544432221 223566665543211 124567899999999875544432 335788999
Q ss_pred eC-CCCceEEEEecC----CCeEEEEEccCCCccceeeccCcc--cCeEEEEEcCCCCEEEEEc-CCC----eEEEeecc
Q psy6859 145 LG-DAIPTAAVSDQD----SSHVHIYDCKGNGTPLHVLDRLHT--KPVVLIKFNPIYQVVVSVD-KAG----ILEYWSGY 212 (261)
Q Consensus 145 ~~-~~~~~~~~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~-~dg----~i~iwd~~ 212 (261)
+| ++..++++.... ...|.++|.. .+ ....+. .+. ..+..+.|+|||+.|+..+ .++ .|.+||+.
T Consensus 196 sp~dg~~l~~~~~~~~~~~~~~l~~~d~~-~~-~~~~l~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~ 272 (388)
T 3pe7_A 196 RPYDDSTVAFCHEGPHDLVDARMWLINED-GT-NMRKVK-THAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPE 272 (388)
T ss_dssp ETTEEEEEEEEECSCTTTSSCSEEEEETT-SC-CCEESC-CCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTT
T ss_pred CCCCCCEEEEEEecCCCCCcceEEEEeCC-CC-ceEEee-eCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecC
Confidence 99 887643333221 3368888875 43 344443 333 3578899999999775543 222 39999987
Q ss_pred ccc
Q psy6859 213 KQE 215 (261)
Q Consensus 213 ~~~ 215 (261)
+++
T Consensus 273 ~g~ 275 (388)
T 3pe7_A 273 TLE 275 (388)
T ss_dssp TCC
T ss_pred CCc
Confidence 654
No 160
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.86 E-value=2.5e-18 Score=132.25 Aligned_cols=228 Identities=12% Similarity=0.080 Sum_probs=143.8
Q ss_pred CeEEEe----cCCCeEEEEeccC--CceeeeEEeeccccceeEEEEeeCCCEEEEEeCC----CcEEEEEccc--ccee-
Q psy6859 15 DFVITA----SNDGHIKFWKKQE--EGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASD----KAMKVFDVIN--FDMI- 81 (261)
Q Consensus 15 ~~l~s~----~~d~~i~iw~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----g~v~~wd~~~--~~~~- 81 (261)
.+++.| +.++.|.+|.++. +..+.+..+ +...+..++|+|++++|++++.+ +.+.+|++.. ++..
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~ 91 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHL 91 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEE
T ss_pred eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEE
Confidence 355555 3567899998754 333334334 66778899999999999998876 7999999875 4332
Q ss_pred -eeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEE----eecC--------CcceEEEEEEeCCC
Q psy6859 82 -NMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMI----KLDF--------TPLTVECIHYLGDA 148 (261)
Q Consensus 82 -~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~----~~~~--------~~~~~~~~~~~~~~ 148 (261)
......... ...+..+++.+++. ...++.+.+|++.....+..+ .... ....+.+++|+|++
T Consensus 92 ~~~~~~~~~~--p~~~~~dg~~l~~~---~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg 166 (361)
T 3scy_A 92 LNTQKTMGAD--PCYLTTNGKNIVTA---NYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDG 166 (361)
T ss_dssp EEEEECSSSC--EEEEEECSSEEEEE---ETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTS
T ss_pred eeEeccCCCC--cEEEEECCCEEEEE---ECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCC
Confidence 222222222 22222366655543 356899999999754332211 1110 11235789999999
Q ss_pred CceEEEEecCCCeEEEEEccCCCc------cc-----eeeccCcccCeEEEEEcCCCCEEEEEc-CCCeEEEeecccccc
Q psy6859 149 IPTAAVSDQDSSHVHIYDCKGNGT------PL-----HVLDRLHTKPVVLIKFNPIYQVVVSVD-KAGILEYWSGYKQEF 216 (261)
Q Consensus 149 ~~~~~~~~~~d~~i~i~d~~~~~~------~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~ 216 (261)
.+ +++++..++.|.+|++..... +. ..+.......+..++|+|+|++|++++ .++.|.+|++.++..
T Consensus 167 ~~-l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~ 245 (361)
T 3scy_A 167 KY-LLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML 245 (361)
T ss_dssp SE-EEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE
T ss_pred CE-EEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce
Confidence 85 355666689999999872221 11 112113456678999999999887666 689999999864311
Q ss_pred cCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecC
Q psy6859 217 KFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMD 260 (261)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~D 260 (261)
.....+.....+...+..++|+|||++|+++..+
T Consensus 246 ----------~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~ 279 (361)
T 3scy_A 246 ----------DEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL 279 (361)
T ss_dssp ----------EEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS
T ss_pred ----------EEeEEEecCCCCCCCcccEEECCCCCEEEEECCC
Confidence 0011122223344556899999999998776543
No 161
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.85 E-value=4.9e-18 Score=126.47 Aligned_cols=230 Identities=13% Similarity=0.174 Sum_probs=160.4
Q ss_pred CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEee------ccccceeEEEEe-eCCCEEEEEeC-CCcEE
Q psy6859 1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFR------SHLGVIHSICTN-YNGTLLCTVAS-DKAMK 71 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~------~~~~~v~~~~~~-~~~~~l~s~~~-dg~v~ 71 (261)
||-....++++++ ++++++...++.|.+|+.+. +....+. ++...+..+++. ++++++++... ++.|.
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g---~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG---RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ 103 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS---CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCCC---cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEE
Confidence 4556789999999 88888888899999999874 3344443 234567899994 67766666533 78999
Q ss_pred EEEccccceeeeeecc-CcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCc
Q psy6859 72 VFDVINFDMINMIKLD-FTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIP 150 (261)
Q Consensus 72 ~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (261)
+|| .+++.+..+... ......+.+.++++.+++. ..++.|.+||.. ++.+..+........+..+++++++.
T Consensus 104 ~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~----~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~- 176 (286)
T 1q7f_A 104 IYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVE----CKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQE- 176 (286)
T ss_dssp EEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEE----TTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSE-
T ss_pred EEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEE----CCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCC-
Confidence 999 567776665432 2234556677777644433 568899999965 44555554322334578999999986
Q ss_pred eEEEEecCCCeEEEEEccCCCccceeec-cCcccCeEEEEEcCCCCEEEEEcCCC-eEEEeecccccccCCeeeeeeccc
Q psy6859 151 TAAVSDQDSSHVHIYDCKGNGTPLHVLD-RLHTKPVVLIKFNPIYQVVVSVDKAG-ILEYWSGYKQEFKFPKCVHFESKL 228 (261)
Q Consensus 151 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~ 228 (261)
++++...++.|++||.. ++.+..+. .++...+..++++|+|+++++...++ .|.+||..
T Consensus 177 -l~v~~~~~~~i~~~~~~--g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~---------------- 237 (286)
T 1q7f_A 177 -IFISDNRAHCVKVFNYE--GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD---------------- 237 (286)
T ss_dssp -EEEEEGGGTEEEEEETT--CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT----------------
T ss_pred -EEEEECCCCEEEEEcCC--CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC----------------
Confidence 47777778999999974 55666664 12235789999999999888887775 99999963
Q ss_pred ccceeecCCC--ccceeeeeECCCCceEEEeecC
Q psy6859 229 DTDLFEFAKN--KTYPSGLSFSPDGNKFVTISMD 260 (261)
Q Consensus 229 ~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~~D 260 (261)
++.+..+..+ ...+.+++++|+|+++++ +.|
T Consensus 238 g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~ 270 (286)
T 1q7f_A 238 GQLISALESKVKHAQCFDVALMDDGSVVLA-SKD 270 (286)
T ss_dssp SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETT
T ss_pred CCEEEEEcccCCCCcceeEEECCCCcEEEE-CCC
Confidence 3333333332 234779999999987777 444
No 162
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.85 E-value=2.7e-18 Score=130.46 Aligned_cols=233 Identities=11% Similarity=0.108 Sum_probs=161.8
Q ss_pred CCeEEEEEcC-CCeEEEecCC------------------------CeEEEEeccCCceeeeEEee-ccccceeEEEEeeC
Q psy6859 4 SPITHVVVTK-TDFVITASND------------------------GHIKFWKKQEEGIEFVKHFR-SHLGVIHSICTNYN 57 (261)
Q Consensus 4 ~~v~~~~~~~-~~~l~s~~~d------------------------~~i~iw~~~~~~~~~~~~~~-~~~~~v~~~~~~~~ 57 (261)
+.+.+|+++| ++++++...+ +.|.+||..++ +....+. ++-.....++++++
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA--EILQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC--CEEEEECTTTCSSEEEEEECTT
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC--eEEeccCCCccCCceEEEECCC
Confidence 5689999999 8888888777 47999998876 4444443 34456889999999
Q ss_pred CCEEEEEeCCCcEEEEEccccc-eeeeee---------ccCcceeEEEEee-cCCceeeeeeecC-CCCeEEEEEcCCCc
Q psy6859 58 GTLLCTVASDKAMKVFDVINFD-MINMIK---------LDFTPLTVECIHY-LGDAIPTAAVSDQ-DSSRVHIYDCKGND 125 (261)
Q Consensus 58 ~~~l~s~~~dg~v~~wd~~~~~-~~~~~~---------~~~~~~~~~~~~~-~~~~~~~~~~s~~-~d~~i~i~d~~~~~ 125 (261)
++++++...++.|++||..... .+..+. ........+.+.+ ++..+++- + .++.|.+|| .+++
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d----~~~~~~I~~~~-~~g~ 176 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSD----GYCNSRIVQFS-PSGK 176 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEE----CSSCCEEEEEC-TTSC
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEe----CCCCCeEEEEc-CCCC
Confidence 9988888889999999975432 444442 1112344567776 44433332 4 589999999 4555
Q ss_pred eeeEEeecCC--------cceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeec-cCcccCeEEEEEcC----
Q psy6859 126 MINMIKLDFT--------PLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD-RLHTKPVVLIKFNP---- 192 (261)
Q Consensus 126 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~v~~~~~~~---- 192 (261)
.+..+..... -.....++++|++.. ++++...++.|++||.. +++.+..+. ..+...+..++|+|
T Consensus 177 ~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~-l~v~d~~~~~I~~~~~~-~G~~~~~~~~~~~~~~~~~~~~~pg~~~ 254 (329)
T 3fvz_A 177 FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQ-LCVADRENGRIQCFKTD-TKEFVREIKHASFGRNVFAISYIPGFLF 254 (329)
T ss_dssp EEEEECEECCSSSCCTTEESCEEEEEEETTTTE-EEEEETTTTEEEEEETT-TCCEEEEECCTTTTTCEEEEEEETTEEE
T ss_pred EEEEeccCCCCCCCCCcccCCCcEEEEECCCCE-EEEEECCCCEEEEEECC-CCcEEEEEeccccCCCcceeeecCCEEE
Confidence 6665542211 123689999998432 47788889999999997 788888774 14566788999999
Q ss_pred --CCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeec---CCCccceeeeeECCCCceEEEeecC
Q psy6859 193 --IYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEF---AKNKTYPSGLSFSPDGNKFVTISMD 260 (261)
Q Consensus 193 --~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~s~~~D 260 (261)
+++..++...+..|++||+.+ ++.+..+ .++...+.+++++|+|.++++...+
T Consensus 255 ~~~g~~~v~~~~~~~v~~~~~~~---------------g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~ 312 (329)
T 3fvz_A 255 AVNGKPYFGDQEPVQGFVMNFSS---------------GEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHT 312 (329)
T ss_dssp EEECCCCTTCSCCCCEEEEETTT---------------CCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSS
T ss_pred EeCCCEEeccCCCcEEEEEEcCC---------------CeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCC
Confidence 333223333455899999854 5555555 3566778999999999777776554
No 163
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.85 E-value=6.4e-19 Score=134.71 Aligned_cols=192 Identities=9% Similarity=-0.031 Sum_probs=139.3
Q ss_pred CeEEEEEcC-CCe-EEEecCCCeEEEEeccCCceeeeEEeecc------ccceeEEEEeeCCCEEEEEeCC---------
Q psy6859 5 PITHVVVTK-TDF-VITASNDGHIKFWKKQEEGIEFVKHFRSH------LGVIHSICTNYNGTLLCTVASD--------- 67 (261)
Q Consensus 5 ~v~~~~~~~-~~~-l~s~~~d~~i~iw~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~s~~~d--------- 67 (261)
.+..++|+| +++ ++++..++.|.+||+.+. +....+..+ ...+..++|+|+++++++++.+
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~--~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 121 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC--KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV 121 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTT--EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCC--cEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccc
Confidence 567899999 764 456678899999999876 555555422 2337899999999999998865
Q ss_pred ---CcEEEEEccccceee---eeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecC-------
Q psy6859 68 ---KAMKVFDVINFDMIN---MIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDF------- 134 (261)
Q Consensus 68 ---g~v~~wd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~------- 134 (261)
+.|.+||+.+++... .+..+. ....+.++++++ ++.. + +.|.+||+.+++.+..+....
T Consensus 122 ~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~-l~~~----~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 193 (349)
T 1jmx_B 122 VKPPRLEVFSTADGLEAKPVRTFPMPR-QVYLMRAADDGS-LYVA----G--PDIYKMDVKTGKYTVALPLRNWNRKGYS 193 (349)
T ss_dssp ECCCEEEEEEGGGGGGBCCSEEEECCS-SCCCEEECTTSC-EEEE----S--SSEEEECTTTCCEEEEECSTTCCCTTBC
T ss_pred cCCCeEEEEECCCccccceeeeccCCC-cccceeECCCCc-EEEc----c--CcEEEEeCCCCceeccccccccCCcccc
Confidence 899999998865433 333332 345566888887 5443 3 349999999887766654321
Q ss_pred ------------------C-----------------------------------------cceEEEEEEeC-CCCceEEE
Q psy6859 135 ------------------T-----------------------------------------PLTVECIHYLG-DAIPTAAV 154 (261)
Q Consensus 135 ------------------~-----------------------------------------~~~~~~~~~~~-~~~~~~~~ 154 (261)
. ...+..+.++| ++.. ++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~--l~ 271 (349)
T 1jmx_B 194 APDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQ--IY 271 (349)
T ss_dssp CCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTE--EE
T ss_pred CccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCE--EE
Confidence 0 00234566778 8875 34
Q ss_pred EecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859 155 SDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK 213 (261)
Q Consensus 155 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 213 (261)
++ ++.|.+||+. +++.+..+. ....+.+++|+|++++|++++.++.|.+||+.+
T Consensus 272 ~~--~~~v~~~d~~-~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~ 325 (349)
T 1jmx_B 272 GV--LNRLAKYDLK-QRKLIKAAN--LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT 325 (349)
T ss_dssp EE--ESEEEEEETT-TTEEEEEEE--CSSCCCEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred EE--cCeEEEEECc-cCeEEEEEc--CCCCccceEECCCCCEEEEecCCCeEEEEeccc
Confidence 43 7899999998 888877775 344578999999999888888899999999854
No 164
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.85 E-value=1.1e-19 Score=148.35 Aligned_cols=222 Identities=9% Similarity=0.044 Sum_probs=153.3
Q ss_pred CCeEEEEEcCCCeEEEecC---CCeEEEEeccC--CceeeeEEeeccccceeEEEEeeCCCE-EEEEeCCCcEEEEEccc
Q psy6859 4 SPITHVVVTKTDFVITASN---DGHIKFWKKQE--EGIEFVKHFRSHLGVIHSICTNYNGTL-LCTVASDKAMKVFDVIN 77 (261)
Q Consensus 4 ~~v~~~~~~~~~~l~s~~~---d~~i~iw~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~dg~v~~wd~~~ 77 (261)
..|..++|+|++++++++. +....+|.++. .+... .+... ..+...+|+|+++. +++.+.++.+.+||+.+
T Consensus 65 ~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~g~~~--~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~ 141 (582)
T 3o4h_A 65 NSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQ--RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDG 141 (582)
T ss_dssp SEECEECTTCSEEEEEEECSTTSCCEEEEEEETTSTTCCE--ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEET
T ss_pred cccccccCCCCeEEEEeccCCCCcceEEEEEeccCCCccc--cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccC
Confidence 5789999999866666654 45566765543 22122 33222 23346688888753 33334444556999988
Q ss_pred cceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEec
Q psy6859 78 FDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ 157 (261)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (261)
++.......+. ....++|+|+.++......+..+.|.+||+.+++.. .+. .+...+..++|+||+.. ++++.
T Consensus 142 g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~--~~~~~~~~~~~SpDG~~--l~~~~ 213 (582)
T 3o4h_A 142 GGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFD--SGEGSFSSASISPGMKV--TAGLE 213 (582)
T ss_dssp TEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EEC--CSSCEEEEEEECTTSCE--EEEEE
T ss_pred CcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-Eee--cCCCccccceECCCCCE--EEEcc
Confidence 87655444332 567789999988866322222378999999988754 333 34557899999999986 45667
Q ss_pred CCC--eEEEEEccCCCccceeeccCcccCeEEEE--------EcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecc
Q psy6859 158 DSS--HVHIYDCKGNGTPLHVLDRLHTKPVVLIK--------FNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESK 227 (261)
Q Consensus 158 ~d~--~i~i~d~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 227 (261)
.++ .|++||+. +++.. .+. .+...+..+. |+|||.++++++.|+.+++|++ +
T Consensus 214 ~~~~~~i~~~d~~-~~~~~-~~~-~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g------------- 275 (582)
T 3o4h_A 214 TAREARLVTVDPR-DGSVE-DLE-LPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--G------------- 275 (582)
T ss_dssp CSSCEEEEEECTT-TCCEE-ECC-CSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--T-------------
T ss_pred CCCeeEEEEEcCC-CCcEE-Ecc-CCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--C-------------
Confidence 788 89999998 77666 565 6666666666 9999988899999999999997 2
Q ss_pred cccceeecCCCccceeeeeECCCCceEEEeecC
Q psy6859 228 LDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMD 260 (261)
Q Consensus 228 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~D 260 (261)
+.+. ...+.+.+++|+ +++++++++.+
T Consensus 276 --~~~~---~~~~~v~~~~~s-dg~~l~~~s~~ 302 (582)
T 3o4h_A 276 --ERVE---APQGNHGRVVLW-RGKLVTSHTSL 302 (582)
T ss_dssp --EEEC---CCSSEEEEEEEE-TTEEEEEEEET
T ss_pred --Ceec---cCCCceEEEEec-CCEEEEEEcCC
Confidence 1111 233568899999 99999888765
No 165
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.83 E-value=8.3e-17 Score=122.41 Aligned_cols=233 Identities=12% Similarity=0.049 Sum_probs=152.9
Q ss_pred CCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCC----CcEEEEEcc
Q psy6859 2 HRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASD----KAMKVFDVI 76 (261)
Q Consensus 2 H~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----g~v~~wd~~ 76 (261)
|...+.+++|+| +++++++..++.|.+|+.+++ +.......+...+.+++++++++++++...+ +.|.+||..
T Consensus 43 ~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~--~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~ 120 (333)
T 2dg1_A 43 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETK--EIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATEN 120 (333)
T ss_dssp SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTC--CEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTT
T ss_pred cCccccCcEECCCCCEEEEECCCCEEEEEeCCCC--cEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCC
Confidence 345678999999 787778888999999999876 3333333456779999999999888877666 689999988
Q ss_pred ccceeeeee--ccCcceeEEEEeecCCceeeeeeecCC------CCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCC
Q psy6859 77 NFDMINMIK--LDFTPLTVECIHYLGDAIPTAAVSDQD------SSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDA 148 (261)
Q Consensus 77 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (261)
+++....+. ........+.+.+++...++. .. .+.|..+|..+++....... ......++++|++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~i~~~~dg 193 (333)
T 2dg1_A 121 GDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTD----FRGYSTNPLGGVYYVSPDFRTVTPIIQN---ISVANGIALSTDE 193 (333)
T ss_dssp SCSCEEEECSSSSCCCEEEEEECTTSCEEEEE----CCCBTTBCCEEEEEECTTSCCEEEEEEE---ESSEEEEEECTTS
T ss_pred CCEEEEEEccCccCCcccceEECCCCCEEEEe----ccccccCCCceEEEEeCCCCEEEEeecC---CCcccceEECCCC
Confidence 766543322 122234455666766544332 22 35666667665544332221 1245789999998
Q ss_pred CceEEEEecCCCeEEEEEccCCCccceee------ccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeee
Q psy6859 149 IPTAAVSDQDSSHVHIYDCKGNGTPLHVL------DRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCV 222 (261)
Q Consensus 149 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 222 (261)
.. ++++...++.|.+||+...+..+..+ .......+..++++++|+++++...++.|.+||..
T Consensus 194 ~~-l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~---------- 262 (333)
T 2dg1_A 194 KV-LWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR---------- 262 (333)
T ss_dssp SE-EEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT----------
T ss_pred CE-EEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC----------
Confidence 74 34555667899999996223333211 00111367889999999987777778899999973
Q ss_pred eeecccccceeecCCC------ccceeeeeECCCCceEEEeecC
Q psy6859 223 HFESKLDTDLFEFAKN------KTYPSGLSFSPDGNKFVTISMD 260 (261)
Q Consensus 223 ~~~~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~s~~~D 260 (261)
++.+..+..+ ...+.+++|+||++.|+.++.+
T Consensus 263 ------g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 263 ------GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp ------SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred ------CCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 2233333322 2268899999998777665543
No 166
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.82 E-value=1.1e-17 Score=128.63 Aligned_cols=222 Identities=13% Similarity=0.104 Sum_probs=144.7
Q ss_pred EEEEcC-CCeEEEec----------CCCeEEEEeccCCceeeeEEeecc------ccceeEEEEeeCCCEEEEEeC--CC
Q psy6859 8 HVVVTK-TDFVITAS----------NDGHIKFWKKQEEGIEFVKHFRSH------LGVIHSICTNYNGTLLCTVAS--DK 68 (261)
Q Consensus 8 ~~~~~~-~~~l~s~~----------~d~~i~iw~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~s~~~--dg 68 (261)
.++|+| +++++++. .++.|.+||..+. +.+..+... ......++++|||++|+++.. ++
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~--~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~ 131 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL--TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPAT 131 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC--CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC--cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCC
Confidence 789999 88887775 3678999999876 555555432 235678999999999998874 57
Q ss_pred cEEEEEccccceeee-eeccCcc---------eeEEEEeecCCceeee--------------------------------
Q psy6859 69 AMKVFDVINFDMINM-IKLDFTP---------LTVECIHYLGDAIPTA-------------------------------- 106 (261)
Q Consensus 69 ~v~~wd~~~~~~~~~-~~~~~~~---------~~~~~~~~~~~~~~~~-------------------------------- 106 (261)
.|.+||+.+++.+.. +...... .....+.+++..+...
T Consensus 132 ~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 211 (361)
T 2oiz_A 132 SIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDK 211 (361)
T ss_dssp EEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECS
T ss_pred eEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccC
Confidence 999999999988776 5432210 0011111111100000
Q ss_pred --eeecCCCCeEEEEEcCCCcee--eEEeecC--------CcceEEEEEEeCCCCceEEEEec----------CCCeEEE
Q psy6859 107 --AVSDQDSSRVHIYDCKGNDMI--NMIKLDF--------TPLTVECIHYLGDAIPTAAVSDQ----------DSSHVHI 164 (261)
Q Consensus 107 --~~s~~~d~~i~i~d~~~~~~~--~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~----------~d~~i~i 164 (261)
.+..+.++.+.++|+...... ..+.... .+.....++++|++... +++.. ..+.|.+
T Consensus 212 ~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~l-yv~~~~~~~~~~~~~~~~~v~v 290 (361)
T 2oiz_A 212 DKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRM-YVFMHPDGKEGTHKFPAAEIWV 290 (361)
T ss_dssp SEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEE-EEEEESSCCTTCTTCCCSEEEE
T ss_pred CEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeE-EEEEccCCCcccccCCCceEEE
Confidence 000123455666666543211 1111100 01111126788988764 33322 1358999
Q ss_pred EEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccc--cceeecCCCccce
Q psy6859 165 YDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLD--TDLFEFAKNKTYP 242 (261)
Q Consensus 165 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v 242 (261)
||+. +.+.+.++. .+. +.+++|+|+|++|++++. +.|.+||.. ++ +.+..+..+....
T Consensus 291 iD~~-t~~~v~~i~-~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~---------------t~~l~~~~~i~~~G~~P 350 (361)
T 2oiz_A 291 MDTK-TKQRVARIP-GRD--ALSMTIDQQRNLMLTLDG-GNVNVYDIS---------------QPEPKLLRTIEGAAEAS 350 (361)
T ss_dssp EETT-TTEEEEEEE-CTT--CCEEEEETTTTEEEEECS-SCEEEEECS---------------SSSCEEEEEETTSCSSE
T ss_pred EECC-CCcEEEEEe-cCC--eeEEEECCCCCEEEEeCC-CeEEEEECC---------------CCcceeeEEeccCCCCc
Confidence 9999 899999997 555 899999999999998887 999999984 46 7777776677788
Q ss_pred eeeeECCCCc
Q psy6859 243 SGLSFSPDGN 252 (261)
Q Consensus 243 ~~~~~s~~~~ 252 (261)
..++++|+|+
T Consensus 351 ~~~~~~p~G~ 360 (361)
T 2oiz_A 351 LQVQFHPVGG 360 (361)
T ss_dssp EEEEECCCSC
T ss_pred EEEEecCCCC
Confidence 9999999986
No 167
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.81 E-value=1.6e-16 Score=118.85 Aligned_cols=228 Identities=11% Similarity=0.062 Sum_probs=156.4
Q ss_pred CCeEEEEEcC-CC-eEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccccee
Q psy6859 4 SPITHVVVTK-TD-FVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMI 81 (261)
Q Consensus 4 ~~v~~~~~~~-~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~ 81 (261)
....+++|+| ++ +++++..++.|..|+..+. ...+..+...+.+++++++++++++...++.|.+||..+++..
T Consensus 28 ~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~ 103 (296)
T 3e5z_A 28 TWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ----LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWE 103 (296)
T ss_dssp SSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC----EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEE
T ss_pred ccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC----eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEE
Confidence 4567899999 77 7888899999999998864 3455556678899999999998887777789999999777654
Q ss_pred eeeecc----CcceeEEEEeecCCceeeeeeecC-------------CCCeEEEEEcCCCceeeEEeecCCcceEEEEEE
Q psy6859 82 NMIKLD----FTPLTVECIHYLGDAIPTAAVSDQ-------------DSSRVHIYDCKGNDMINMIKLDFTPLTVECIHY 144 (261)
Q Consensus 82 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~s~~-------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 144 (261)
...... ......+.+.+++...++-...++ ..+.|..++.. ++. ..+.. .......+++
T Consensus 104 ~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~--~~~~~~gi~~ 179 (296)
T 3e5z_A 104 SIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIR--DRVKPNGLAF 179 (296)
T ss_dssp EEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEEC--CCSSEEEEEE
T ss_pred EEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeec--CCCCCccEEE
Confidence 332211 112234566777764443100011 13456666655 433 22222 2235578999
Q ss_pred eCCCCceEEEEecCCCeEEEEEccCCCcc---ceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCee
Q psy6859 145 LGDAIPTAAVSDQDSSHVHIYDCKGNGTP---LHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKC 221 (261)
Q Consensus 145 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 221 (261)
+|++.. +++.+.++.|.+||+..+++. ...+. .+...+..++++++|++.++. ++.|.+||..
T Consensus 180 s~dg~~--lv~~~~~~~i~~~~~~~~g~~~~~~~~~~-~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~--------- 245 (296)
T 3e5z_A 180 LPSGNL--LVSDTGDNATHRYCLNARGETEYQGVHFT-VEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD--------- 245 (296)
T ss_dssp CTTSCE--EEEETTTTEEEEEEECSSSCEEEEEEEEC-CSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT---------
T ss_pred CCCCCE--EEEeCCCCeEEEEEECCCCcCcCCCeEee-CCCCCCCeEEECCCCCEEEEc--CCeEEEECCC---------
Confidence 999985 477777899999999633443 23332 455667789999999866665 7889999974
Q ss_pred eeeecccccceeecCCCccceeeeeE-CCCCceEEEeecCC
Q psy6859 222 VHFESKLDTDLFEFAKNKTYPSGLSF-SPDGNKFVTISMDR 261 (261)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~s~~~Dg 261 (261)
++.+..+..+.. +.+++| +|+++.|++++.++
T Consensus 246 -------g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~ 278 (296)
T 3e5z_A 246 -------GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE 278 (296)
T ss_dssp -------SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE
T ss_pred -------CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe
Confidence 455566666666 899999 68999888887653
No 168
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.80 E-value=1.9e-18 Score=134.42 Aligned_cols=228 Identities=9% Similarity=0.003 Sum_probs=140.8
Q ss_pred CeEEEEEcC-CCeEEEecCC---CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccce
Q psy6859 5 PITHVVVTK-TDFVITASND---GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDM 80 (261)
Q Consensus 5 ~v~~~~~~~-~~~l~s~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~ 80 (261)
.+..++|+| +++|+..... ..|.+|++.++ +......++......+.|+||+++|+.++.++.|++||+.+++.
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~--~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~ 114 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQ--QAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEE 114 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTT--EEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCC--cEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCc
Confidence 367788999 8887766432 46888888776 43333332322233488999999999999999999999988776
Q ss_pred eeeeeccCcceeE-------------------EEEeecCCceeeeee-ecCCCCeEEEEEcCCCceeeEEeecCCcceEE
Q psy6859 81 INMIKLDFTPLTV-------------------ECIHYLGDAIPTAAV-SDQDSSRVHIYDCKGNDMINMIKLDFTPLTVE 140 (261)
Q Consensus 81 ~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~-s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 140 (261)
......+...... ..++++++.++.... ....+..|.+||+.+++...... ....+.
T Consensus 115 ~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~---~~~~~~ 191 (396)
T 3c5m_A 115 QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQ---DTAWLG 191 (396)
T ss_dssp EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEE---ESSCEE
T ss_pred EEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeecc---CCcccc
Confidence 5544433221100 012333433322100 01356789999999887655443 234678
Q ss_pred EEEEeC-CCCceEEEEecCC----CeEEEEEccCCCccceeeccCc--ccCeEEEEEcCCCCEEEEEcCC-----CeEEE
Q psy6859 141 CIHYLG-DAIPTAAVSDQDS----SHVHIYDCKGNGTPLHVLDRLH--TKPVVLIKFNPIYQVVVSVDKA-----GILEY 208 (261)
Q Consensus 141 ~~~~~~-~~~~~~~~~~~~d----~~i~i~d~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d-----g~i~i 208 (261)
.+.|+| ++..+++++.... ..|.+||+. .++ ...+. .+ ...+..+.|+|+|++|+..+.+ +.|.+
T Consensus 192 ~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~-~~~-~~~l~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 268 (396)
T 3c5m_A 192 HPIYRPFDDSTVGFCHEGPHDLVDARMWLVNED-GSN-VRKIK-EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYK 268 (396)
T ss_dssp EEEEETTEEEEEEEEECSCSSSCSCCCEEEETT-SCC-CEESS-CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEE
T ss_pred cceECCCCCCEEEEEecCCCCCCCceEEEEECC-CCc-eeEee-ccCCCccccceEECCCCCEEEEEecCCCCccceEEE
Confidence 899999 6765434443222 468888886 443 33333 22 3357889999999987766533 44999
Q ss_pred eecccccccCCeeeeeecccccceeecCCCccceeeeeECC-CCceEEEee
Q psy6859 209 WSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSP-DGNKFVTIS 258 (261)
Q Consensus 209 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~ 258 (261)
||+.+++ .+.+..+.+ .. +.|+| ||++|++++
T Consensus 269 ~d~~~g~-------------~~~l~~~~~----~~-~~~s~~dg~~l~~~~ 301 (396)
T 3c5m_A 269 ANPETLE-------------NEEVMVMPP----CS-HLMSNFDGSLMVGDG 301 (396)
T ss_dssp ECTTTCC-------------EEEEEECCS----EE-EEEECSSSSEEEEEE
T ss_pred EECCCCC-------------eEEeeeCCC----CC-CCccCCCCceEEEec
Confidence 9986421 111222222 22 88999 999888754
No 169
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.80 E-value=2.2e-18 Score=144.06 Aligned_cols=229 Identities=13% Similarity=0.052 Sum_probs=151.4
Q ss_pred CeEEEEEcC-CCeEEEecC---------CCeEEEEeccCCceeee--EEeeccccceeEEEEeeCCCEEEEEeCCCcEEE
Q psy6859 5 PITHVVVTK-TDFVITASN---------DGHIKFWKKQEEGIEFV--KHFRSHLGVIHSICTNYNGTLLCTVASDKAMKV 72 (261)
Q Consensus 5 ~v~~~~~~~-~~~l~s~~~---------d~~i~iw~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~ 72 (261)
.|.+++||| +++|++++. ++.|++||++++ +.+ ..+ ...+..++|+|||+.|+.+. ++.|++
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g--~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~ 134 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNG--EFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYL 134 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT--EECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEE
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCC--ccccceec---CcccccceECCCCCEEEEEE-CCeEEE
Confidence 488999999 899988876 789999999886 331 222 25688999999999999875 789999
Q ss_pred EEccccceeeeeeccC-c-----------------ceeEEEEeecCCceeeeeeecC-----------------------
Q psy6859 73 FDVINFDMINMIKLDF-T-----------------PLTVECIHYLGDAIPTAAVSDQ----------------------- 111 (261)
Q Consensus 73 wd~~~~~~~~~~~~~~-~-----------------~~~~~~~~~~~~~~~~~~~s~~----------------------- 111 (261)
|++.+++......... . ......++|+++.++......+
T Consensus 135 ~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~y 214 (719)
T 1z68_A 135 KQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPY 214 (719)
T ss_dssp ESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEEC
T ss_pred EeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecC
Confidence 9998877654322111 1 1136889999998877632211
Q ss_pred -------CCCeEEEEEcCCCcee--eEEe----ecCCcceEEEEEEeCCCCceEEEEec--CC--CeEEEEE----ccCC
Q psy6859 112 -------DSSRVHIYDCKGNDMI--NMIK----LDFTPLTVECIHYLGDAIPTAAVSDQ--DS--SHVHIYD----CKGN 170 (261)
Q Consensus 112 -------~d~~i~i~d~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~d--~~i~i~d----~~~~ 170 (261)
....|.+||+.+++.. ..+. ...+...+..++|+||+.. +++.. .+ ..|.+|| .. +
T Consensus 215 p~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~--~~~~~~~~~~~~~l~~~d~~~~~~-~ 291 (719)
T 1z68_A 215 PKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERV--CLQWLKRVQNVSVLSICDFREDWQ-T 291 (719)
T ss_dssp CBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEE--EEEEEESSTTEEEEEEEEECSSSS-S
T ss_pred CCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeE--EEEEeccccCeEEEEEEcccCCCC-C
Confidence 1127889999987653 1111 1124557899999999652 44422 22 3488899 76 6
Q ss_pred Cccceeec---cCcccCeE-----EEEEcCCCCEEE--EEcCCC--eEEEeecccccccCCeeeeeecccccceeecCCC
Q psy6859 171 GTPLHVLD---RLHTKPVV-----LIKFNPIYQVVV--SVDKAG--ILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKN 238 (261)
Q Consensus 171 ~~~~~~~~---~~~~~~v~-----~~~~~~~~~~l~--~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (261)
++....+. ..|...+. .+.|+|||+.|+ +...+| .|.+||+.+ ++ ...+..+
T Consensus 292 g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~---------------~~-~~~lt~~ 355 (719)
T 1z68_A 292 WDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTV---------------EN-AIQITSG 355 (719)
T ss_dssp EECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCS---------------TT-CEECSCS
T ss_pred CceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCC---------------Cc-eEecccC
Confidence 65554441 15666666 789999999554 354555 466666643 22 3445555
Q ss_pred ccceeeeeECCCCceEEEeec
Q psy6859 239 KTYPSGLSFSPDGNKFVTISM 259 (261)
Q Consensus 239 ~~~v~~~~~s~~~~~l~s~~~ 259 (261)
...+..+.++ +++.|+..+.
T Consensus 356 ~~~v~~~~~~-d~~~i~~~~~ 375 (719)
T 1z68_A 356 KWEAINIFRV-TQDSLFYSSN 375 (719)
T ss_dssp SSCEEEEEEE-CSSEEEEEES
T ss_pred ceEEEEEEEE-eCCEEEEEEe
Confidence 5567777777 7777776654
No 170
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.80 E-value=8.1e-17 Score=118.98 Aligned_cols=187 Identities=13% Similarity=0.063 Sum_probs=142.2
Q ss_pred cCCCeEEEecCCCeEEEEeccCCceeeeEEeeccc-cceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccC-c
Q psy6859 12 TKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHL-GVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDF-T 89 (261)
Q Consensus 12 ~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~-~ 89 (261)
+|+++|++++.|+.|.+||.+++ +.+.++..+. ..+.++.++|+|++++ +.++.|..||. +++.+..+..+. .
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG--~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~ 77 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTK--EIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGC 77 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTT--EEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTC
T ss_pred CCCcEEEeeCCCCEEEEEECCCC--eEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCc
Confidence 46889999999999999999887 7788887665 4689999999999888 45778999998 899999888642 3
Q ss_pred ceeEEEEeecCCceeeeeeecCC-CCeEEEEEcCCCceeeEEeecC----CcceEEEEEEeCCCCceEEEEecCCCeEEE
Q psy6859 90 PLTVECIHYLGDAIPTAAVSDQD-SSRVHIYDCKGNDMINMIKLDF----TPLTVECIHYLGDAIPTAAVSDQDSSHVHI 164 (261)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~s~~~-d~~i~i~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i 164 (261)
........++++.+++. +. ++.+..+|. +++.+..+.... .......+++.+++.. +++...++.|..
T Consensus 78 ~~~~~~~~~dG~~lv~~----~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~--lv~~~~~~~v~~ 150 (276)
T 3no2_A 78 EMQTARILPDGNALVAW----CGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNY--LVPLFATSEVRE 150 (276)
T ss_dssp EEEEEEECTTSCEEEEE----ESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCE--EEEETTTTEEEE
T ss_pred cccccEECCCCCEEEEe----cCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCE--EEEecCCCEEEE
Confidence 44555666777766654 34 677888886 566666665421 1123345567888875 778888999999
Q ss_pred EEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccc
Q psy6859 165 YDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQ 214 (261)
Q Consensus 165 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 214 (261)
||.. ++.+.++. . ...+.++...++|++++++..++.|..+|..++
T Consensus 151 ~d~~--G~~~w~~~-~-~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG 196 (276)
T 3no2_A 151 IAPN--GQLLNSVK-L-SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESN 196 (276)
T ss_dssp ECTT--SCEEEEEE-C-SSCCCEEEECTTSCEEEECBTTSEEEEECTTTC
T ss_pred ECCC--CCEEEEEE-C-CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCC
Confidence 9974 78888885 3 345667888999999999888889999998643
No 171
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.80 E-value=1.3e-16 Score=122.84 Aligned_cols=228 Identities=7% Similarity=-0.007 Sum_probs=142.0
Q ss_pred eEEEecCC--CeEEEEecc--CCceeeeEEee-ccccceeEEEEeeCCCEEEEEeCCCcEEEEEcc-ccceeeeeecc--
Q psy6859 16 FVITASND--GHIKFWKKQ--EEGIEFVKHFR-SHLGVIHSICTNYNGTLLCTVASDKAMKVFDVI-NFDMINMIKLD-- 87 (261)
Q Consensus 16 ~l~s~~~d--~~i~iw~~~--~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~-~~~~~~~~~~~-- 87 (261)
.++.|+.. +.|.+|+++ ++....+.... .....+..++|+|++++|++++.+ .|.+|++. +++........
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 34555543 578888764 33223233222 233467899999999999998888 99999997 77655433221
Q ss_pred CcceeEEEEeecCCceeeeeee-------cC----CCCeEEEEEcC-CCceeeEEeec--CCcceEEEEEEeCCCCceEE
Q psy6859 88 FTPLTVECIHYLGDAIPTAAVS-------DQ----DSSRVHIYDCK-GNDMINMIKLD--FTPLTVECIHYLGDAIPTAA 153 (261)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~s-------~~----~d~~i~i~d~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 153 (261)
.. ...+.++++++.++..... +. .++.+.+|++. .++....+... .....+.++.|+|++.+ ++
T Consensus 83 g~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~-l~ 160 (365)
T 1jof_A 83 GH-PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETY-LY 160 (365)
T ss_dssp SS-GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSE-EE
T ss_pred CC-CccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCE-EE
Confidence 22 2234566777642221110 11 68899999997 45554444321 12346789999999985 34
Q ss_pred EEecCCCeEEEEEccCCCcc--ceeecc-CcccCeEEEEEcCCCCEEEEEc-CCCeEEEeecccccccCCeeeeeecccc
Q psy6859 154 VSDQDSSHVHIYDCKGNGTP--LHVLDR-LHTKPVVLIKFNPIYQVVVSVD-KAGILEYWSGYKQEFKFPKCVHFESKLD 229 (261)
Q Consensus 154 ~~~~~d~~i~i~d~~~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 229 (261)
++...++.|++||+..+++. +..+.. .+...+..++|+|+|++|++++ .++.|.+|+++.. ++
T Consensus 161 ~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~-------------~g 227 (365)
T 1jof_A 161 SADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA-------------TH 227 (365)
T ss_dssp EEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-------------TC
T ss_pred EEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCC-------------CC
Confidence 44445789999999622332 223320 1356789999999999887766 4789999987421 11
Q ss_pred cc------eeecC----CCcc------ceeeee-ECCCCceEEEeec
Q psy6859 230 TD------LFEFA----KNKT------YPSGLS-FSPDGNKFVTISM 259 (261)
Q Consensus 230 ~~------~~~~~----~~~~------~v~~~~-~s~~~~~l~s~~~ 259 (261)
+. +..+. +|.. .+..++ |+|||++|++++.
T Consensus 228 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~ 274 (365)
T 1jof_A 228 MPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR 274 (365)
T ss_dssp CEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred cEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECC
Confidence 11 11221 2232 578999 9999999887653
No 172
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.80 E-value=2.8e-16 Score=119.20 Aligned_cols=223 Identities=9% Similarity=-0.024 Sum_probs=155.6
Q ss_pred CeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeee
Q psy6859 5 PITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMI 84 (261)
Q Consensus 5 ~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~ 84 (261)
....+.+..+..+++...++.|.+||..+. +.+.++. .......++++++++.+++...++.|.+||..+++....+
T Consensus 45 ~~~~i~~~~~~lyv~~~~~~~v~viD~~t~--~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i 121 (328)
T 3dsm_A 45 VAQSMVIRDGIGWIVVNNSHVIFAIDINTF--KEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYI 121 (328)
T ss_dssp CEEEEEEETTEEEEEEGGGTEEEEEETTTC--CEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEE
T ss_pred cceEEEEECCEEEEEEcCCCEEEEEECccc--EEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEE
Confidence 356777766667777778899999999987 6666665 3356789999999855555447899999999999888777
Q ss_pred eccC------cceeEEEEeecCCceeeeeeecC-CCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEec
Q psy6859 85 KLDF------TPLTVECIHYLGDAIPTAAVSDQ-DSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ 157 (261)
Q Consensus 85 ~~~~------~~~~~~~~~~~~~~~~~~~~s~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (261)
.... .+..+. + +++.++.. .. .++.|.++|+.+++.+..+..... ...+.++|++.. ++++.
T Consensus 122 ~~g~~~~~~~~p~~i~-~--~~~~lyv~---~~~~~~~v~viD~~t~~~~~~i~~g~~---p~~i~~~~dG~l--~v~~~ 190 (328)
T 3dsm_A 122 ECPDMDMESGSTEQMV-Q--YGKYVYVN---CWSYQNRILKIDTETDKVVDELTIGIQ---PTSLVMDKYNKM--WTITD 190 (328)
T ss_dssp ECTTCCTTTCBCCCEE-E--ETTEEEEE---ECTTCCEEEEEETTTTEEEEEEECSSC---BCCCEECTTSEE--EEEBC
T ss_pred EcCCccccCCCcceEE-E--ECCEEEEE---cCCCCCEEEEEECCCCeEEEEEEcCCC---ccceEEcCCCCE--EEEEC
Confidence 7655 444333 3 45555544 12 488999999999988888775443 357788998863 55544
Q ss_pred CC----------CeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecc
Q psy6859 158 DS----------SHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESK 227 (261)
Q Consensus 158 ~d----------~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 227 (261)
.+ +.|.++|.. +++....+..........++++|+++.|+++.. .|.+||+.+++..
T Consensus 191 ~~~~~~~~~~~~~~v~~id~~-t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~---------- 257 (328)
T 3dsm_A 191 GGYEGSPYGYEAPSLYRIDAE-TFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVP---------- 257 (328)
T ss_dssp CBCTTCSSCBCCCEEEEEETT-TTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCC----------
T ss_pred CCccCCccccCCceEEEEECC-CCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCcee----------
Confidence 43 789999998 777776664122346899999999998887765 8999998653210
Q ss_pred cccceeecCCCccceeeeeECCC-CceEEEe
Q psy6859 228 LDTDLFEFAKNKTYPSGLSFSPD-GNKFVTI 257 (261)
Q Consensus 228 ~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~ 257 (261)
....+......+..++++|+ ++++++.
T Consensus 258 ---~~~~~~~~~~~p~gi~vdp~~g~lyva~ 285 (328)
T 3dsm_A 258 ---VRPFLEFRDTKYYGLTVNPNNGEVYVAD 285 (328)
T ss_dssp ---SSCSBCCCSSCEEEEEECTTTCCEEEEE
T ss_pred ---eeeeecCCCCceEEEEEcCCCCeEEEEc
Confidence 00111112456788999994 4444443
No 173
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.79 E-value=2.2e-17 Score=136.85 Aligned_cols=235 Identities=8% Similarity=-0.023 Sum_probs=151.0
Q ss_pred CCCCCeEEEEEcC-CCeEEEe--cCCCeEEEEeccCCceeeeEEeecccccee---------EEEEe--eCCCE-EEEEe
Q psy6859 1 MHRSPITHVVVTK-TDFVITA--SNDGHIKFWKKQEEGIEFVKHFRSHLGVIH---------SICTN--YNGTL-LCTVA 65 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~s~--~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~-l~s~~ 65 (261)
+|...|..++|++ .-++++. +.++...||..... .....+..|...+. ...|+ ||++. |+.++
T Consensus 21 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~ 98 (662)
T 3azo_A 21 SRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRAD--GAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTH 98 (662)
T ss_dssp HTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTT--SCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEB
T ss_pred hcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCC--CCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEE
Confidence 4788899999998 4455665 66889999996443 23445555665655 66666 99988 77655
Q ss_pred C-CCcEEEEEcc--c-cceeeeeec-----cCcceeEEEEeecCCceeeeeeecCCC----------CeEEEEEcCC---
Q psy6859 66 S-DKAMKVFDVI--N-FDMINMIKL-----DFTPLTVECIHYLGDAIPTAAVSDQDS----------SRVHIYDCKG--- 123 (261)
Q Consensus 66 ~-dg~v~~wd~~--~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~s~~~d----------~~i~i~d~~~--- 123 (261)
. +..|.++++. . ++ ...+.. +........++++++.++.. +.+ ..|.+||+.+
T Consensus 99 ~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~ 173 (662)
T 3azo_A 99 FGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCM----AEEFTGEGPSDVRRFLAAVPLDGSAA 173 (662)
T ss_dssp TTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEE----EEEECSSSTTCEEEEEEEEETTSTTT
T ss_pred CCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEE----EecccCCCCCCceeEEEEEECCCCcc
Confidence 3 5567777765 2 33 333332 23345677889999988776 333 5899999988
Q ss_pred ---CceeeEEeecCCcceEEEEEEeCCCCceEEEEecC------CCeEEEEEccCCC--ccceeeccCcccCeEEEEEcC
Q psy6859 124 ---NDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD------SSHVHIYDCKGNG--TPLHVLDRLHTKPVVLIKFNP 192 (261)
Q Consensus 124 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d~~i~i~d~~~~~--~~~~~~~~~~~~~v~~~~~~~ 192 (261)
++.. .+.. .....+..+.|+||+.++++.+... ...|++||+..++ .....+...+...+..+.|+|
T Consensus 174 ~~~~~~~-~l~~-~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~sp 251 (662)
T 3azo_A 174 ADRSAVR-ELSD-DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAP 251 (662)
T ss_dssp TCGGGSE-ESSC-SCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECT
T ss_pred ccCCcee-EEEe-cCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECC
Confidence 5443 2220 2334677889999998743333222 1479999997224 133333314578899999999
Q ss_pred CCCEEEEEcCCC--eEEEeecccccccCCeeeeeecccccceeecCCCccc--------eeeeeECCCCceEEEeec
Q psy6859 193 IYQVVVSVDKAG--ILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTY--------PSGLSFSPDGNKFVTISM 259 (261)
Q Consensus 193 ~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------v~~~~~s~~~~~l~s~~~ 259 (261)
||++++++..++ .|.+||+.+ ++.......+... +..++|+|+++++++++.
T Consensus 252 dg~l~~~~~~~~~~~l~~~~~~~---------------~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~ 313 (662)
T 3azo_A 252 DGSLIVATDRTGWWNLHRVDPAT---------------GAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK 313 (662)
T ss_dssp TSCEEEEECTTSSCEEEEECTTT---------------CCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS
T ss_pred CCeEEEEECCCCCeEEEEEECCC---------------CceeecccccccccCccccccCceEeEeCCCEEEEEEEc
Confidence 999888888888 555566533 2222222222211 567889999998888754
No 174
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.78 E-value=2.9e-16 Score=119.24 Aligned_cols=201 Identities=10% Similarity=0.078 Sum_probs=147.8
Q ss_pred CCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEe---------eccccceeEEEEee-CCCEEEEEe-CCCcE
Q psy6859 3 RSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHF---------RSHLGVIHSICTNY-NGTLLCTVA-SDKAM 70 (261)
Q Consensus 3 ~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~---------~~~~~~v~~~~~~~-~~~~l~s~~-~dg~v 70 (261)
-.....++++| ++++++...++.|++|+.+... ..+..+ .++-.....++++| +++++++.+ .++.|
T Consensus 90 ~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~-~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I 168 (329)
T 3fvz_A 90 FYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKE-GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRI 168 (329)
T ss_dssp CSSEEEEEECTTSCEEEEETTTTEEEEECTTCSS-CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEE
T ss_pred cCCceEEEECCCCCEEEEECCCCEEEEEeCCCCe-EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeE
Confidence 35678999999 8888888899999999986531 134444 23444678999999 788888876 68999
Q ss_pred EEEEccccceeeeeeccC----------cceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEE
Q psy6859 71 KVFDVINFDMINMIKLDF----------TPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVE 140 (261)
Q Consensus 71 ~~wd~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 140 (261)
++|+ .+++.+..+.... .....+.+.+++..++.+ ...++.|++||..+++.+..+........+.
T Consensus 169 ~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~---d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~ 244 (329)
T 3fvz_A 169 VQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVA---DRENGRIQCFKTDTKEFVREIKHASFGRNVF 244 (329)
T ss_dssp EEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEE---ETTTTEEEEEETTTCCEEEEECCTTTTTCEE
T ss_pred EEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEE---ECCCCEEEEEECCCCcEEEEEeccccCCCcc
Confidence 9999 5677766654221 114456677764444333 3678999999999888888886655555778
Q ss_pred EEEEeCCCCceEEEE-------ecCCCeEEEEEccCCCccceeec--cCcccCeEEEEEcCCCCEEEEEcCCCeEEEeec
Q psy6859 141 CIHYLGDAIPTAAVS-------DQDSSHVHIYDCKGNGTPLHVLD--RLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSG 211 (261)
Q Consensus 141 ~~~~~~~~~~~~~~~-------~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 211 (261)
.++++| +. ++.+ ...+..|++||.. +++.+..+. ..+...+..|+++|+|.++++...++.|++|++
T Consensus 245 ~~~~~p-g~--~~~~~g~~~v~~~~~~~v~~~~~~-~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~ 320 (329)
T 3fvz_A 245 AISYIP-GF--LFAVNGKPYFGDQEPVQGFVMNFS-SGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTL 320 (329)
T ss_dssp EEEEET-TE--EEEEECCCCTTCSCCCCEEEEETT-TCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEE
T ss_pred eeeecC-CE--EEEeCCCEEeccCCCcEEEEEEcC-CCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeC
Confidence 899999 31 2222 3345589999998 888888773 146667899999999988888889999999998
Q ss_pred c
Q psy6859 212 Y 212 (261)
Q Consensus 212 ~ 212 (261)
.
T Consensus 321 ~ 321 (329)
T 3fvz_A 321 T 321 (329)
T ss_dssp E
T ss_pred C
Confidence 5
No 175
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.77 E-value=7.9e-16 Score=128.48 Aligned_cols=233 Identities=8% Similarity=-0.069 Sum_probs=153.5
Q ss_pred CCCCeEEEEEcC-CCeEEEecCCC-----eEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCc------
Q psy6859 2 HRSPITHVVVTK-TDFVITASNDG-----HIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKA------ 69 (261)
Q Consensus 2 H~~~v~~~~~~~-~~~l~s~~~d~-----~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~------ 69 (261)
|+..+..++||| +++||.++.++ .|++||+.++ +.......+ ..+..++|+|||+.|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg--~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~ 199 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGA--KELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDG 199 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTT--EEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSS
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCC--CCCcccccC-cccceEEEEeCCCEEEEEEECCccccccc
Confidence 444688999999 88888665433 8999999987 443322212 23678999999999999887765
Q ss_pred ----------EEEEEcccccee--eeeecc--CcceeEEEEeecCCceeeeeeecCC-CCeEEEEEcCC------Cc-ee
Q psy6859 70 ----------MKVFDVINFDMI--NMIKLD--FTPLTVECIHYLGDAIPTAAVSDQD-SSRVHIYDCKG------ND-MI 127 (261)
Q Consensus 70 ----------v~~wd~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~-d~~i~i~d~~~------~~-~~ 127 (261)
|++|++.+++.. ..+... ........++++++.++.....+.. +..|.+||+.+ +. ..
T Consensus 200 ~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 279 (710)
T 2xdw_A 200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW 279 (710)
T ss_dssp SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred cccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccce
Confidence 999999877632 222222 2224566788999887765332222 67999999986 43 34
Q ss_pred eEEeecCCcceEEEEEEeCCCCceEEEEec--CCCeEEEEEccCCCc--cceeeccCccc--CeEEEEEcCCCCEEEEEc
Q psy6859 128 NMIKLDFTPLTVECIHYLGDAIPTAAVSDQ--DSSHVHIYDCKGNGT--PLHVLDRLHTK--PVVLIKFNPIYQVVVSVD 201 (261)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~i~i~d~~~~~~--~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~ 201 (261)
..+..+... ... .+++++..+++.+.. ..+.|.+||+. ++. ....+. .+.. .+..+.|++++.++++..
T Consensus 280 ~~l~~~~~~--~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~-~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~lv~~~~ 354 (710)
T 2xdw_A 280 VKLIDNFEG--EYD-YVTNEGTVFTFKTNRHSPNYRLINIDFT-DPEESKWKVLV-PEHEKDVLEWVACVRSNFLVLCYL 354 (710)
T ss_dssp EEEECSSSS--CEE-EEEEETTEEEEEECTTCTTCEEEEEETT-SCCGGGCEEEE-CCCSSCEEEEEEEETTTEEEEEEE
T ss_pred EEeeCCCCc--EEE-EEeccCCEEEEEECCCCCCCEEEEEeCC-CCCcccceecc-CCCCCCeEEEEEEEcCCEEEEEEE
Confidence 444433222 222 467787764444432 13479999987 543 234443 4433 688899998888888888
Q ss_pred CCCeEE--EeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEe
Q psy6859 202 KAGILE--YWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTI 257 (261)
Q Consensus 202 ~dg~i~--iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 257 (261)
.|+..+ +|++. +++.+..+..+...+..+.++|+++.|+..
T Consensus 355 ~~g~~~l~~~~~~---------------~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~ 397 (710)
T 2xdw_A 355 HDVKNTLQLHDLA---------------TGALLKIFPLEVGSVVGYSGQKKDTEIFYQ 397 (710)
T ss_dssp ETTEEEEEEEETT---------------TCCEEEEECCCSSEEEEEECCTTCSEEEEE
T ss_pred ECCEEEEEEEECC---------------CCCEEEecCCCCceEEEEecCCCCCEEEEE
Confidence 888654 45542 345556666677788899999998766543
No 176
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.77 E-value=1.1e-16 Score=124.20 Aligned_cols=205 Identities=12% Similarity=0.035 Sum_probs=137.8
Q ss_pred eccCCceeeeEEeeccccceeE-----EEEeeCCCEEEEEeC-CC--cEEEEEccccceeeeeeccCcceeEEEEeecCC
Q psy6859 30 KKQEEGIEFVKHFRSHLGVIHS-----ICTNYNGTLLCTVAS-DK--AMKVFDVINFDMINMIKLDFTPLTVECIHYLGD 101 (261)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~l~s~~~-dg--~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (261)
+..++ .....+..|...... .+|+|||++|+.++. ++ .|.+||+.+++.......+........++++++
T Consensus 16 ~~~~g--~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~ 93 (388)
T 3pe7_A 16 DASTG--AQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDD 93 (388)
T ss_dssp CTTTC--CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSS
T ss_pred cCCCC--cceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCC
Confidence 44444 455666666655544 789999999998887 66 488889988877665544433333457899999
Q ss_pred ceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEE--------------------ecCCCe
Q psy6859 102 AIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVS--------------------DQDSSH 161 (261)
Q Consensus 102 ~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~d~~ 161 (261)
.++.. +.++.|.+||+.+++.......+..........+++++..++.+. ...+..
T Consensus 94 ~l~~~----~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (388)
T 3pe7_A 94 ALFYV----KDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCR 169 (388)
T ss_dssp EEEEE----ETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEE
T ss_pred EEEEE----eCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcce
Confidence 88777 678899999999998766665443222222334588887522111 224578
Q ss_pred EEEEEccCCCccceeeccCcccCeEEEEEcC-CCCEEEEEcCC------CeEEEeecccccccCCeeeeeecccccceee
Q psy6859 162 VHIYDCKGNGTPLHVLDRLHTKPVVLIKFNP-IYQVVVSVDKA------GILEYWSGYKQEFKFPKCVHFESKLDTDLFE 234 (261)
Q Consensus 162 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 234 (261)
|++||+. +++..... .+...+..+.|+| +|+.|+....+ ..|.++|+.. .....
T Consensus 170 l~~~d~~-~g~~~~l~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~----------------~~~~~ 230 (388)
T 3pe7_A 170 LMRVDLK-TGESTVIL--QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDG----------------TNMRK 230 (388)
T ss_dssp EEEEETT-TCCEEEEE--EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTS----------------CCCEE
T ss_pred EEEEECC-CCceEEee--cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCC----------------CceEE
Confidence 9999998 66544433 5667789999999 99988776643 3677777642 22333
Q ss_pred cCCCc--cceeeeeECCCCceEEEeec
Q psy6859 235 FAKNK--TYPSGLSFSPDGNKFVTISM 259 (261)
Q Consensus 235 ~~~~~--~~v~~~~~s~~~~~l~s~~~ 259 (261)
+..+. ..+..++|+|||+.|+..+.
T Consensus 231 l~~~~~~~~~~~~~~spdg~~l~~~~~ 257 (388)
T 3pe7_A 231 VKTHAEGESCTHEFWVPDGSALVYVSY 257 (388)
T ss_dssp SCCCCTTEEEEEEEECTTSSCEEEEEE
T ss_pred eeeCCCCcccccceECCCCCEEEEEec
Confidence 33333 35778999999998876554
No 177
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.75 E-value=2.5e-16 Score=132.01 Aligned_cols=202 Identities=10% Similarity=0.003 Sum_probs=132.3
Q ss_pred EEEEEcC-CCeEEEecCC---------CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcc
Q psy6859 7 THVVVTK-TDFVITASND---------GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVI 76 (261)
Q Consensus 7 ~~~~~~~-~~~l~s~~~d---------~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~ 76 (261)
..++||| +++|+.++.+ +.+.+||+.++ +. ..+..|.+.+...+|+|||+.|+.+ .++.|++|++.
T Consensus 65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~--~~-~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~ 140 (740)
T 4a5s_A 65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKR--QL-ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEP 140 (740)
T ss_dssp CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT--EE-CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESST
T ss_pred cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCC--cE-EEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECC
Confidence 4478999 8999988876 56679999987 43 3456677889999999999999987 56899999998
Q ss_pred ccceeeeeeccC------------------cceeEEEEeecCCceeeeeeecC---------------------------
Q psy6859 77 NFDMINMIKLDF------------------TPLTVECIHYLGDAIPTAAVSDQ--------------------------- 111 (261)
Q Consensus 77 ~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~s~~--------------------------- 111 (261)
+++..+...... ......+++|+++.++....-.+
T Consensus 141 ~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~ 220 (740)
T 4a5s_A 141 NLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPK 220 (740)
T ss_dssp TSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCB
T ss_pred CCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCC
Confidence 876543211111 01123678999988776532111
Q ss_pred ---C--CCeEEEEEcCC---Cce--eeEEeec----CCcceEEEEEEeCCCCceEEEEe--cCCCeEEEEEccCCCc---
Q psy6859 112 ---D--SSRVHIYDCKG---NDM--INMIKLD----FTPLTVECIHYLGDAIPTAAVSD--QDSSHVHIYDCKGNGT--- 172 (261)
Q Consensus 112 ---~--d~~i~i~d~~~---~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~d~~i~i~d~~~~~~--- 172 (261)
. ...|.+||+.+ ++. ...+... .+...+..++|+|++...+.... +.+..|.+||+. +++
T Consensus 221 ~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~-tg~~~~ 299 (740)
T 4a5s_A 221 AGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYD-ESSGRW 299 (740)
T ss_dssp TTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEE-TTTTEE
T ss_pred CcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECC-CCcccc
Confidence 1 12688899998 742 2222211 14557889999999974332332 223479999998 766
Q ss_pred -c--ceee-ccCcccCeE-----EEEEcCCCCEEE-EEc-CCC--eEEEeeccc
Q psy6859 173 -P--LHVL-DRLHTKPVV-----LIKFNPIYQVVV-SVD-KAG--ILEYWSGYK 213 (261)
Q Consensus 173 -~--~~~~-~~~~~~~v~-----~~~~~~~~~~l~-~~~-~dg--~i~iwd~~~ 213 (261)
+ +..+ ...+...+. .+.|+|||+.|+ ..+ .+| .|.+||+.+
T Consensus 300 ~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~ 353 (740)
T 4a5s_A 300 NCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDK 353 (740)
T ss_dssp EECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTC
T ss_pred ceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCC
Confidence 1 2222 114555544 688999999776 554 444 577777643
No 178
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.75 E-value=3.9e-17 Score=126.96 Aligned_cols=226 Identities=9% Similarity=-0.045 Sum_probs=140.8
Q ss_pred EEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeE-------------------EEEeeCCCEEEEE---
Q psy6859 8 HVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHS-------------------ICTNYNGTLLCTV--- 64 (261)
Q Consensus 8 ~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~s~--- 64 (261)
.+.|+| ++.|+.++.++.|.+|++.++. .......+...... +.|+|+++.++..
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~--~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~ 162 (396)
T 3c5m_A 85 GGFISTDERAFFYVKNELNLMKVDLETLE--EQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFY 162 (396)
T ss_dssp TCEECTTSSEEEEEETTTEEEEEETTTCC--EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHH
T ss_pred cceECCCCCEEEEEEcCCcEEEEECCCCC--cEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeec
Confidence 367999 8899999999999999998763 33333323322212 3456677666544
Q ss_pred --eCCCcEEEEEccccceeeeeeccCcceeEEEEee-cCCceeeeeeecCCC----CeEEEEEcCCCceeeEEeecCCcc
Q psy6859 65 --ASDKAMKVFDVINFDMINMIKLDFTPLTVECIHY-LGDAIPTAAVSDQDS----SRVHIYDCKGNDMINMIKLDFTPL 137 (261)
Q Consensus 65 --~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~d----~~i~i~d~~~~~~~~~~~~~~~~~ 137 (261)
..+..|.+||+.+++...... .........+++ ++..++.+. .... ..|.+||+.+++...... .....
T Consensus 163 ~~~~~~~l~~~d~~~g~~~~~~~-~~~~~~~~~~sp~dg~~l~~~~--~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~ 238 (396)
T 3c5m_A 163 HTNPTCRLIKVDIETGELEVIHQ-DTAWLGHPIYRPFDDSTVGFCH--EGPHDLVDARMWLVNEDGSNVRKIKE-HAEGE 238 (396)
T ss_dssp HTCCCEEEEEEETTTCCEEEEEE-ESSCEEEEEEETTEEEEEEEEE--CSCSSSCSCCCEEEETTSCCCEESSC-CCTTE
T ss_pred cCCCcceEEEEECCCCcEEeecc-CCcccccceECCCCCCEEEEEe--cCCCCCCCceEEEEECCCCceeEeec-cCCCc
Confidence 356689999998877655443 333455566777 666555541 1222 578999987665333222 21233
Q ss_pred eEEEEEEeCCCCceEEEEec-CC--CeEEEEEccCCCccceeeccCcccCeEEEEEcC-CCCEEEEEc------------
Q psy6859 138 TVECIHYLGDAIPTAAVSDQ-DS--SHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNP-IYQVVVSVD------------ 201 (261)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~-~d--~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~------------ 201 (261)
.+..+.|+|++..+++++.. .. +.|++||+. +++...... .. ... +.|+| +|++++.++
T Consensus 239 ~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~-~g~~~~l~~--~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~ 313 (396)
T 3c5m_A 239 SCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPE-TLENEEVMV--MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADS 313 (396)
T ss_dssp EEEEEEECTTSSCEEEEEEETTTCCEEEEEECTT-TCCEEEEEE--CC-SEE-EEEECSSSSEEEEEECCC---------
T ss_pred cccceEECCCCCEEEEEecCCCCccceEEEEECC-CCCeEEeee--CC-CCC-CCccCCCCceEEEecCCcceeeccccc
Confidence 67889999999874443322 12 449999997 665433221 11 123 89999 999887654
Q ss_pred ----CCCeEEEeecccccccCCeeeeeecccccceeecCCCcc-----------ceeeeeECCCCceEEEeecC
Q psy6859 202 ----KAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT-----------YPSGLSFSPDGNKFVTISMD 260 (261)
Q Consensus 202 ----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~s~~~D 260 (261)
.+..|.+||+.++ + ...+..+.. .+..++|+|||+.|+.++.+
T Consensus 314 ~~~~~~~~i~~~d~~~~---------------~-~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~ 371 (396)
T 3c5m_A 314 YNIENDPFLYVLNTKAK---------------S-AQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDF 371 (396)
T ss_dssp -CCCCCCEEEEEETTTT---------------B-CCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT
T ss_pred cccCCCCcEEEEecccC---------------c-eEEccCCCCccccccccccCCCCCceEccCCCeEEEEecC
Confidence 3478999998542 1 122222322 25678999999999887653
No 179
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.75 E-value=1.7e-15 Score=115.77 Aligned_cols=216 Identities=12% Similarity=0.057 Sum_probs=134.6
Q ss_pred CeEEEEEcC-CCeEEEecCC---C--eEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCC-----------
Q psy6859 5 PITHVVVTK-TDFVITASND---G--HIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASD----------- 67 (261)
Q Consensus 5 ~v~~~~~~~-~~~l~s~~~d---~--~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----------- 67 (261)
.+..++|+| ++.|+..+.+ + .|.+|++.++ +...... +.. +..++|+||++.|+.++.+
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g--~~~~l~~-~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~ 135 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETL--SSKKILE-AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFED 135 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTT--EEEEEEE-ESE-EEEEEECTTSSEEEEEEECCCC--------
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCC--ceEEEEc-CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEc
Confidence 467899999 8888877653 3 4777777765 4433333 334 8999999999998887642
Q ss_pred ----------------CcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCC----C-eEEEEEcCCCce
Q psy6859 68 ----------------KAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS----S-RVHIYDCKGNDM 126 (261)
Q Consensus 68 ----------------g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d----~-~i~i~d~~~~~~ 126 (261)
..|.+||+.+++.+..+... ......+++++ .+++. ....+ . ...+|.+.+++.
T Consensus 136 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~--~~~~~~~spdg-~~~~~--~~~~~~~~~~~~~~l~~~d~~~~ 210 (347)
T 2gop_A 136 DVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP--RFSSGIWHRDK-IVVNV--PHREIIPQYFKFWDIYIWEDGKE 210 (347)
T ss_dssp -CCCC---------CEEEEEEEETTTTEEEEEEEEE--TTCEEEEETTE-EEEEE--ECCCSSCCSSCCEEEEEEETTEE
T ss_pred ccceeecCcccccCccceEEEEECCCCeEEeeecCC--CcccccCCCCe-EEEEE--ecccccccccccccEEEeCCCce
Confidence 56899999888764444432 45566777777 33322 11111 2 334444334443
Q ss_pred eeEEeecCCcceEEEEEEeCCCCceEEEEecC------CCeEEEEEccCCCccceeeccCcccCeEE-EEEcCCCCEEEE
Q psy6859 127 INMIKLDFTPLTVECIHYLGDAIPTAAVSDQD------SSHVHIYDCKGNGTPLHVLDRLHTKPVVL-IKFNPIYQVVVS 199 (261)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~ 199 (261)
..+... ..+..+ +|++..+++++... ...|.+|| +++...... .+...+.. +.|+ ++ ++++
T Consensus 211 -~~l~~~---~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d---~~~~~~l~~-~~~~~~~~~~~~s-dg-~~~~ 278 (347)
T 2gop_A 211 -EKMFEK---VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD---GKEVMGILD-EVDRGVGQAKIKD-GK-VYFT 278 (347)
T ss_dssp -EEEEEE---ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC---SSCEEESST-TCCSEEEEEEEET-TE-EEEE
T ss_pred -EEeccC---cceeeE--CCCCCEEEEEEccccCCccccceEEEEC---CCceEeccc-cCCcccCCccEEc-Cc-EEEE
Confidence 333322 233333 89998743333221 24677777 344443343 56677886 8999 88 8899
Q ss_pred EcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecC
Q psy6859 200 VDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMD 260 (261)
Q Consensus 200 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~D 260 (261)
++.++.++|| +.+ ++.. .+..+...|.+++|+| .++++++.+
T Consensus 279 ~~~~~~~~l~-~~~---------------g~~~-~~~~~~~~v~~~~~s~--~~~~~~~~~ 320 (347)
T 2gop_A 279 LFEEGSVNLY-IWD---------------GEIK-PIAKGRHWIMGFDVDE--IVVYLKETA 320 (347)
T ss_dssp EEETTEEEEE-EES---------------SSEE-EEECSSSEEEEEEESS--SEEEEEECS
T ss_pred EecCCcEEEE-EcC---------------CceE-EEecCCCeEEeeeeeC--cEEEEEcCC
Confidence 9999999999 852 2222 2333467889999999 566666554
No 180
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.75 E-value=4.6e-16 Score=128.95 Aligned_cols=227 Identities=8% Similarity=-0.066 Sum_probs=142.8
Q ss_pred EEEEc--C-CCe-EEEecC-CCeEEEEecc--C-CceeeeEEeec-----cccceeEEEEeeCCCEEEEEeCC-------
Q psy6859 8 HVVVT--K-TDF-VITASN-DGHIKFWKKQ--E-EGIEFVKHFRS-----HLGVIHSICTNYNGTLLCTVASD------- 67 (261)
Q Consensus 8 ~~~~~--~-~~~-l~s~~~-d~~i~iw~~~--~-~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~s~~~d------- 67 (261)
...|+ | ++. |+.++. +..|.+++.. + + + ...+.. |...+..++|+|||+.|+.++.+
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~--~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~ 157 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGA--V-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPS 157 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCC--C-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTT
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCC--C-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCC
Confidence 45555 8 777 665543 5667777765 2 3 2 223333 56778999999999999998876
Q ss_pred ---CcEEEEEccc------cceeeeee-ccCcceeEEEEeecCCceeeeeeecC----CCCeEEEEEcC-CCc--eeeEE
Q psy6859 68 ---KAMKVFDVIN------FDMINMIK-LDFTPLTVECIHYLGDAIPTAAVSDQ----DSSRVHIYDCK-GND--MINMI 130 (261)
Q Consensus 68 ---g~v~~wd~~~------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~----~d~~i~i~d~~-~~~--~~~~~ 130 (261)
..|++||+.+ ++... +. .+........++++++.++....... ....|.+||+. ++. ....+
T Consensus 158 ~~~~~i~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l 236 (662)
T 3azo_A 158 DVRRFLAAVPLDGSAAADRSAVRE-LSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTL 236 (662)
T ss_dssp CEEEEEEEEETTSTTTTCGGGSEE-SSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEE
T ss_pred CceeEEEEEECCCCccccCCceeE-EEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEe
Confidence 5899999987 55433 32 23344555678999988876521110 12489999999 562 22233
Q ss_pred eecCCcceEEEEEEeCCCCceEEEEecCCC--eEEEEEccCCCccceeeccCcccC--------eEEEEEcCCCCEEEEE
Q psy6859 131 KLDFTPLTVECIHYLGDAIPTAAVSDQDSS--HVHIYDCKGNGTPLHVLDRLHTKP--------VVLIKFNPIYQVVVSV 200 (261)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~l~~~ 200 (261)
... +...+..+.|+|++. +++++..++ .|.+||+. +++...... .+... +..++|+|++++++++
T Consensus 237 ~~~-~~~~~~~~~~spdg~--l~~~~~~~~~~~l~~~~~~-~~~~~~l~~-~~~~~~~p~w~~~~~~~~~~~~~~~~~~~ 311 (662)
T 3azo_A 237 LGG-PEEAIAQAEWAPDGS--LIVATDRTGWWNLHRVDPA-TGAATQLCR-REEEFAGPLWTPGMRWFAPLANGLIAVVH 311 (662)
T ss_dssp EEE-TTBCEEEEEECTTSC--EEEEECTTSSCEEEEECTT-TCCEEESSC-CSSBSSCCCCSTTCCSEEECTTSCEEEEE
T ss_pred CCC-CCceEcceEECCCCe--EEEEECCCCCeEEEEEECC-CCceeeccc-ccccccCccccccCceEeEeCCCEEEEEE
Confidence 221 234678999999998 356666677 56666664 454433332 22221 5678999999999999
Q ss_pred cCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeee-eECCCCceEEEee
Q psy6859 201 DKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGL-SFSPDGNKFVTIS 258 (261)
Q Consensus 201 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~s~~ 258 (261)
.. +.++||.+.. . +..+..+..|...+..+ +++++.-++++++
T Consensus 312 ~~-~~~~l~~~d~-------------~-~~~~~~l~~~~~~~~~~~s~~~~~~~~~~~~ 355 (662)
T 3azo_A 312 GK-GAAVLGILDP-------------E-SGELVDAAGPWTEWAATLTVSGTRAVGVAAS 355 (662)
T ss_dssp BS-SSCEEEEEET-------------T-TTEEEECCSSCCEEEEEEEEETTEEEEEEEE
T ss_pred Ec-CccEEEEEEC-------------C-CCcEEEecCCCCeEEEEEecCCCEEEEEEcC
Confidence 98 9999995531 1 22355666677777766 4443333333333
No 181
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.75 E-value=4e-15 Score=109.69 Aligned_cols=227 Identities=9% Similarity=-0.005 Sum_probs=145.6
Q ss_pred CeEEEEEcC-CCeEE-EecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceee
Q psy6859 5 PITHVVVTK-TDFVI-TASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMIN 82 (261)
Q Consensus 5 ~v~~~~~~~-~~~l~-s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~ 82 (261)
...++++++ +++++ +...++.|.+|+..+. ........+...+.+++++++++++++.. ++.|.+||.......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~- 100 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGST--GTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT- 100 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-------EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCc--ccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-
Confidence 567899999 77666 5577899999987654 22111122335678999999998666655 889999998654432
Q ss_pred eeec-cCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCe
Q psy6859 83 MIKL-DFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSH 161 (261)
Q Consensus 83 ~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 161 (261)
.+.. .......+.+.+++...++. ..++.|.+|+..+....... ......+..+++++++. ++++...++.
T Consensus 101 ~~~~~~~~~p~~i~~~~~g~l~v~~----~~~~~i~~~~~~~~~~~~~~--~~~~~~p~~i~~~~~g~--l~v~~~~~~~ 172 (270)
T 1rwi_B 101 VLPFDGLNYPEGLAVDTQGAVYVAD----RGNNRVVKLAAGSKTQTVLP--FTGLNDPDGVAVDNSGN--VYVTDTDNNR 172 (270)
T ss_dssp ECCCCSCSSEEEEEECTTCCEEEEE----GGGTEEEEECTTCCSCEECC--CCSCCSCCCEEECTTCC--EEEEEGGGTE
T ss_pred eeecCCcCCCcceEECCCCCEEEEE----CCCCEEEEEECCCceeEeec--cccCCCceeEEEeCCCC--EEEEECCCCE
Confidence 2221 21334456666666533332 45788999976554332211 11122457888999886 3666666789
Q ss_pred EEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccc
Q psy6859 162 VHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTY 241 (261)
Q Consensus 162 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (261)
|.+||.. ......... .....+.+++++++|.++++...++.|.+|+.... ........+...
T Consensus 173 i~~~~~~-~~~~~~~~~-~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~---------------~~~~~~~~~~~~ 235 (270)
T 1rwi_B 173 VVKLEAE-SNNQVVLPF-TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST---------------TSTVLPFTGLNT 235 (270)
T ss_dssp EEEECTT-TCCEEECCC-SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCS---------------CCEECCCCSCSC
T ss_pred EEEEecC-CCceEeecc-cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCC---------------cceeeccCCCCC
Confidence 9999987 444333222 33367899999999987777777889999997531 111111223356
Q ss_pred eeeeeECCCCceEEEeecC
Q psy6859 242 PSGLSFSPDGNKFVTISMD 260 (261)
Q Consensus 242 v~~~~~s~~~~~l~s~~~D 260 (261)
+.+++++|+|+++++...+
T Consensus 236 p~~i~~~~~g~l~v~~~~~ 254 (270)
T 1rwi_B 236 PLAVAVDSDRTVYVADRGN 254 (270)
T ss_dssp EEEEEECTTCCEEEEEGGG
T ss_pred ceeEEECCCCCEEEEECCC
Confidence 8899999999977776554
No 182
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.74 E-value=1.2e-15 Score=116.00 Aligned_cols=235 Identities=10% Similarity=0.016 Sum_probs=151.7
Q ss_pred CCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceee
Q psy6859 4 SPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMIN 82 (261)
Q Consensus 4 ~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~ 82 (261)
..|.+++|++ ...++..+.++.++.|. . +....+..+...+.+++|++++++++++..++.|.+||..+++...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~ 80 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTIT---A--EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR 80 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEE---C--EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE
T ss_pred cccceeeecCCccceeEEeecccCcccc---c--ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEE
Confidence 4678889998 66677778889999992 2 4455666666778999999999988888889999999998877655
Q ss_pred eeeccCcceeEEEEeecCCceeeeeeecCCC----CeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecC
Q psy6859 83 MIKLDFTPLTVECIHYLGDAIPTAAVSDQDS----SRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD 158 (261)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (261)
...........+.+.++++.+++. ..+ +.|.+||..++.....+........+..+.++|++.. +++...
T Consensus 81 ~~~~~~~~~~~i~~~~dg~l~v~~----~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l--~v~~~~ 154 (333)
T 2dg1_A 81 PFVSHKANPAAIKIHKDGRLFVCY----LGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGF--YFTDFR 154 (333)
T ss_dssp EEECSSSSEEEEEECTTSCEEEEE----CTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCE--EEEECC
T ss_pred EeeCCCCCcceEEECCCCcEEEEe----CCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCE--EEEecc
Confidence 432333445566777777644443 344 6899999988765433332223346889999999863 444432
Q ss_pred ------CCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEE-EEEcCCCeEEEeecccccccCCeeeeeecccccc
Q psy6859 159 ------SSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVV-VSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTD 231 (261)
Q Consensus 159 ------d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 231 (261)
.+.|..+|.. .++. ..+. .....+..++|+|+++.| ++...++.|.+||+.+..... ..+ ....
T Consensus 155 ~~~~~~~~~l~~~~~~-~~~~-~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~---~~~---~~~~ 225 (333)
T 2dg1_A 155 GYSTNPLGGVYYVSPD-FRTV-TPII-QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTI---QPF---GATI 225 (333)
T ss_dssp CBTTBCCEEEEEECTT-SCCE-EEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSE---EEE---EEEE
T ss_pred ccccCCCceEEEEeCC-CCEE-EEee-cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCc---ccc---cceE
Confidence 2456666654 3333 3332 344567899999999866 455567899999985310000 000 0001
Q ss_pred eeecCCCccceeeeeECCCCceEEEeec
Q psy6859 232 LFEFAKNKTYPSGLSFSPDGNKFVTISM 259 (261)
Q Consensus 232 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 259 (261)
...+.++ ..+..++++++|+++++...
T Consensus 226 ~~~~~~~-~~~~~i~~d~~G~l~v~~~~ 252 (333)
T 2dg1_A 226 PYYFTGH-EGPDSCCIDSDDNLYVAMYG 252 (333)
T ss_dssp EEECCSS-SEEEEEEEBTTCCEEEEEET
T ss_pred EEecCCC-CCCCceEECCCCCEEEEEcC
Confidence 1112222 46678999999987776543
No 183
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.74 E-value=7.9e-16 Score=118.24 Aligned_cols=209 Identities=9% Similarity=0.022 Sum_probs=133.6
Q ss_pred CCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEe----------CCCcEEEEEccccceeeeeeccC---
Q psy6859 22 NDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVA----------SDKAMKVFDVINFDMINMIKLDF--- 88 (261)
Q Consensus 22 ~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~----------~dg~v~~wd~~~~~~~~~~~~~~--- 88 (261)
.|+.|.+||..+. +.+..+..+..+ .++|+||+++++++. .++.|.+||..+++.+..+....
T Consensus 29 ~d~~v~v~D~~t~--~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~ 104 (361)
T 2oiz_A 29 TESRVHVYDYTNG--KFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRV 104 (361)
T ss_dssp GGCEEEEEETTTC--CEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBC
T ss_pred ccCeEEEEECCCC--eEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccc
Confidence 4789999998876 566777766555 899999999999886 36689999999988888776431
Q ss_pred ---cceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeE-EeecCCcceEEEEEEeCCCCceEEEEecCC-----
Q psy6859 89 ---TPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINM-IKLDFTPLTVECIHYLGDAIPTAAVSDQDS----- 159 (261)
Q Consensus 89 ---~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----- 159 (261)
.....+.++++++++++... +.++.|.+||+.+++.+.. +.... ...+.+.|++... +++.+.|
T Consensus 105 ~~g~~p~~i~~spdg~~l~v~n~--~~~~~v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~-~~~~~~dg~~~~ 177 (361)
T 2oiz_A 105 QGLNYDGLFRQTTDGKFIVLQNA--SPATSIGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRS-FMTICGDGGLLT 177 (361)
T ss_dssp CBCCCGGGEEECTTSSEEEEEEE--SSSEEEEEEETTTTEEEEEEGGGTT----EEEEEECTTSSSE-EEEEETTSSEEE
T ss_pred ccCCCcceEEECCCCCEEEEECC--CCCCeEEEEECCCCcEEEEEecCCC----cceeEEcCCCCee-EEEECCCCcEEE
Confidence 22345778899988876511 2368999999999987766 43211 0112223332111 2222233
Q ss_pred -------------------------------------------CeEEEEEccCCCc--cceeecc-C----c----ccCe
Q psy6859 160 -------------------------------------------SHVHIYDCKGNGT--PLHVLDR-L----H----TKPV 185 (261)
Q Consensus 160 -------------------------------------------~~i~i~d~~~~~~--~~~~~~~-~----~----~~~v 185 (261)
+.+.++|+. ... .+..+.. . . ....
T Consensus 178 v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~p~g~ 256 (361)
T 2oiz_A 178 INLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFS-GDEVKVDGPWSLLNDEDKAKNWVPGGY 256 (361)
T ss_dssp EEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECS-SSSCEEEEEEESCCHHHHHTTCEECCS
T ss_pred EEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEec-CCCceecccccccCccccccccccCCe
Confidence 344444443 111 0111100 0 0 0111
Q ss_pred EEEEEcCCCCEEEEEcC-----------CCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceE
Q psy6859 186 VLIKFNPIYQVVVSVDK-----------AGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKF 254 (261)
Q Consensus 186 ~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 254 (261)
..++|+|+++.++++.. .+.|.+||+. +.+.+..+..+. +.+++|+|||++|
T Consensus 257 ~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~---------------t~~~v~~i~~~~--p~~ia~spdg~~l 319 (361)
T 2oiz_A 257 NLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTK---------------TKQRVARIPGRD--ALSMTIDQQRNLM 319 (361)
T ss_dssp SCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETT---------------TTEEEEEEECTT--CCEEEEETTTTEE
T ss_pred eEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECC---------------CCcEEEEEecCC--eeEEEECCCCCEE
Confidence 12688999887765532 3479999984 467777777766 8999999999999
Q ss_pred EEeec
Q psy6859 255 VTISM 259 (261)
Q Consensus 255 ~s~~~ 259 (261)
++++.
T Consensus 320 ~v~n~ 324 (361)
T 2oiz_A 320 LTLDG 324 (361)
T ss_dssp EEECS
T ss_pred EEeCC
Confidence 88764
No 184
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.73 E-value=5.7e-15 Score=109.88 Aligned_cols=196 Identities=12% Similarity=0.167 Sum_probs=135.3
Q ss_pred CCCCeEEEEEc-C-CCeEEEecC-CCeEEEEeccCCceeeeEEee-ccccceeEEEEeeCCCEEEEEeCCCcEEEEEccc
Q psy6859 2 HRSPITHVVVT-K-TDFVITASN-DGHIKFWKKQEEGIEFVKHFR-SHLGVIHSICTNYNGTLLCTVASDKAMKVFDVIN 77 (261)
Q Consensus 2 H~~~v~~~~~~-~-~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~ 77 (261)
|...+.++++. + +.++++... ++.|.+|+.+. +.+..+. .+...+.+++++++++++++...++.|.+||. +
T Consensus 75 ~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g---~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~ 150 (286)
T 1q7f_A 75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG---QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-N 150 (286)
T ss_dssp CBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS---CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-T
T ss_pred cccCceEEEEEcCCCeEEEEcCCCCCEEEEECCCC---cEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-C
Confidence 44678899994 5 555555533 88999999543 3444443 23456899999999998888778899999996 4
Q ss_pred cceeeeeec--cCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEE
Q psy6859 78 FDMINMIKL--DFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVS 155 (261)
Q Consensus 78 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (261)
++.+..+.. .......+.+.++++.+++. ..++.|.+||... +.+..+........+..+++++++. ++++
T Consensus 151 g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~----~~~~~i~~~~~~g-~~~~~~~~~g~~~~p~~i~~d~~G~--l~v~ 223 (286)
T 1q7f_A 151 GNVLHKFGCSKHLEFPNGVVVNDKQEIFISD----NRAHCVKVFNYEG-QYLRQIGGEGITNYPIGVGINSNGE--ILIA 223 (286)
T ss_dssp SCEEEEEECTTTCSSEEEEEECSSSEEEEEE----GGGTEEEEEETTC-CEEEEESCTTTSCSEEEEEECTTCC--EEEE
T ss_pred CCEEEEeCCCCccCCcEEEEECCCCCEEEEE----CCCCEEEEEcCCC-CEEEEEccCCccCCCcEEEECCCCC--EEEE
Confidence 565555542 22234556677766533332 5689999999754 4555554332224678999999985 3666
Q ss_pred ecCCC-eEEEEEccCCCccceeeccCc--ccCeEEEEEcCCCCEEEEEcCCCeEEEeecc
Q psy6859 156 DQDSS-HVHIYDCKGNGTPLHVLDRLH--TKPVVLIKFNPIYQVVVSVDKAGILEYWSGY 212 (261)
Q Consensus 156 ~~~d~-~i~i~d~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 212 (261)
...++ .|.+||. .++.+..+. .+ ...+.+++++|+|+++++ +.|+.|++|++.
T Consensus 224 ~~~~~~~i~~~~~--~g~~~~~~~-~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~ 279 (286)
T 1q7f_A 224 DNHNNFNLTIFTQ--DGQLISALE-SKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYV 279 (286)
T ss_dssp ECSSSCEEEEECT--TSCEEEEEE-ESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECS
T ss_pred eCCCCEEEEEECC--CCCEEEEEc-ccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcc
Confidence 66665 9999995 566666665 33 234789999999987777 568999999974
No 185
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.73 E-value=1.1e-15 Score=127.23 Aligned_cols=230 Identities=8% Similarity=-0.096 Sum_probs=147.8
Q ss_pred CCCCCeEEEEEcC-CCeEE-----EecCCCeEEEEeccCCceeeeEEeeccccce--eEEEEeeCCCEEEEEeCCCc---
Q psy6859 1 MHRSPITHVVVTK-TDFVI-----TASNDGHIKFWKKQEEGIEFVKHFRSHLGVI--HSICTNYNGTLLCTVASDKA--- 69 (261)
Q Consensus 1 gH~~~v~~~~~~~-~~~l~-----s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~s~~~dg~--- 69 (261)
+|+..+..++||| +++|| .|+.+..|++||+.++ +.+. ..+...+ ..++|+|||+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg--~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~ 193 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSG--EWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSI 193 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTC--CBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTS
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCC--CCcC--CcccCcccccceEEecCCCEEEEEEecCCCCC
Confidence 3555789999999 88888 5566789999999987 3320 1121222 68899999999999988776
Q ss_pred ----------EEEEEccccce--eeeeec--cCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCC
Q psy6859 70 ----------MKVFDVINFDM--INMIKL--DFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFT 135 (261)
Q Consensus 70 ----------v~~wd~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~ 135 (261)
|++|++.+++. ...+.. +........++++++.++.....+.....|.+||..+++. ..+.....
T Consensus 194 ~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~ 272 (695)
T 2bkl_A 194 KVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVG 272 (695)
T ss_dssp CGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSS
T ss_pred ccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCC
Confidence 99999987762 222222 2234556778899988776522211223677777655543 33333222
Q ss_pred cceEEEEEEeCCCCceEEEEec---CCCeEEEEEccCCCcc--ceeeccCc-ccCeEEEEEcCCCCEEEEEcCCCeEEEe
Q psy6859 136 PLTVECIHYLGDAIPTAAVSDQ---DSSHVHIYDCKGNGTP--LHVLDRLH-TKPVVLIKFNPIYQVVVSVDKAGILEYW 209 (261)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iw 209 (261)
......+ +++. + ++... .++.|.+||+. ++.. ...+...+ ...+..++|+ ++.++++...|+..++|
T Consensus 273 --~~~~~~~-~~g~-l-~~~s~~~~~~~~l~~~d~~-~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~ 345 (695)
T 2bkl_A 273 --AKYEVHA-WKDR-F-YVLTDEGAPRQRVFEVDPA-KPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVR 345 (695)
T ss_dssp --CCEEEEE-ETTE-E-EEEECTTCTTCEEEEEBTT-BCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred --ceEEEEe-cCCc-E-EEEECCCCCCCEEEEEeCC-CCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence 2333444 5555 3 44333 36889999997 5543 23332122 4567888888 67788888999998888
Q ss_pred ecccccccCCeeeeeecccccceeecCCC-ccceeeeeECCCCceEEE
Q psy6859 210 SGYKQEFKFPKCVHFESKLDTDLFEFAKN-KTYPSGLSFSPDGNKFVT 256 (261)
Q Consensus 210 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s 256 (261)
.+.. .++....+..+ ...+..+.++|+++.|+.
T Consensus 346 ~~~~--------------~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~ 379 (695)
T 2bkl_A 346 VATL--------------KGKPVRTVQLPGVGAASNLMGLEDLDDAYY 379 (695)
T ss_dssp EEET--------------TCCEEEECCCSSSSEECCCBSCTTCSEEEE
T ss_pred EEeC--------------CCCeeEEecCCCCeEEEEeecCCCCCEEEE
Confidence 7641 13344445544 667888999999877663
No 186
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.70 E-value=9.4e-15 Score=111.64 Aligned_cols=215 Identities=9% Similarity=0.061 Sum_probs=137.7
Q ss_pred CeEEEEEcCCCeEEEe---------cCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCC---C--cE
Q psy6859 5 PITHVVVTKTDFVITA---------SNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASD---K--AM 70 (261)
Q Consensus 5 ~v~~~~~~~~~~l~s~---------~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---g--~v 70 (261)
.+..+++ .|+.++.. ..++.|.+|++.++. . ..+ ..+..++|+|||++|+.++.+ + .|
T Consensus 16 ~~~~~~~-dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~--~-~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l 87 (347)
T 2gop_A 16 YLSDPRT-KGELVAYVLTKANLKDNKYENTIVIENLKNNA--R-RFI----ENATMPRISPDGKKIAFMRANEEKKVSEI 87 (347)
T ss_dssp EEEEEEE-ETTEEEEEEEEEETTTTEEEEEEEEEETTTCC--E-EEE----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred EcccceE-CCcEEEEEEeecCcccCCccceEEEEeCCCCc--e-EEc----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence 4566667 66665543 226788999988763 2 222 457889999999999987754 3 37
Q ss_pred EEEEccccceeeeeeccCcceeEEEEeecCCceeeeeee------------------c-----CCCCeEEEEEcCCCcee
Q psy6859 71 KVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVS------------------D-----QDSSRVHIYDCKGNDMI 127 (261)
Q Consensus 71 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s------------------~-----~~d~~i~i~d~~~~~~~ 127 (261)
.+|++.+++.......+. .....++++++.++..... + .....|.+||+.+++.+
T Consensus 88 ~~~~~~~g~~~~l~~~~~--~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 165 (347)
T 2gop_A 88 WVADLETLSSKKILEAKN--IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI 165 (347)
T ss_dssp EEEETTTTEEEEEEEESE--EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred EEEECCCCceEEEEcCCC--ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence 788888776655444333 5667788888877765210 0 01357999999988764
Q ss_pred eEEeecCCcceEEEEEEeCCCCceEEEEecCC------C-eEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEE
Q psy6859 128 NMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS------S-HVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSV 200 (261)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d------~-~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 200 (261)
..+.. + .+..+.|+|++ . ++++..+ . ...+|.+. +++. ..+. .+ ..+..+ +|+|++|+..
T Consensus 166 ~~l~~---~-~~~~~~~spdg--~-~~~~~~~~~~~~~~~~~~l~~~d-~~~~-~~l~-~~-~~~~~~--spdg~~l~~~ 232 (347)
T 2gop_A 166 EEFEK---P-RFSSGIWHRDK--I-VVNVPHREIIPQYFKFWDIYIWE-DGKE-EKMF-EK-VSFYAV--DSDGERILLY 232 (347)
T ss_dssp EEEEE---E-TTCEEEEETTE--E-EEEEECCCSSCCSSCCEEEEEEE-TTEE-EEEE-EE-ESEEEE--EECSSCEEEE
T ss_pred eeecC---C-CcccccCCCCe--E-EEEEecccccccccccccEEEeC-CCce-EEec-cC-cceeeE--CCCCCEEEEE
Confidence 55543 2 56788999999 2 4444333 2 44566555 4443 3443 34 555554 9999988776
Q ss_pred cCC--------CeEEEeecccccccCCeeeeeecccccceeecCCCccceee-eeECCCCceEEEeecCC
Q psy6859 201 DKA--------GILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSG-LSFSPDGNKFVTISMDR 261 (261)
Q Consensus 201 ~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~s~~~Dg 261 (261)
+.+ ..|.+|| + ++.......+...+.. +.|+ |+ ++++++.|+
T Consensus 233 ~~~~~~~~~~~~~l~~~d--~---------------~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~ 283 (347)
T 2gop_A 233 GKPEKKYMSEHNKLYIYD--G---------------KEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEG 283 (347)
T ss_dssp ECCSSSCCCSSCEEEEEC--S---------------SCEEESSTTCCSEEEEEEEET-TE-EEEEEEETT
T ss_pred EccccCCccccceEEEEC--C---------------CceEeccccCCcccCCccEEc-Cc-EEEEEecCC
Confidence 643 3577777 2 2333334456677876 8999 88 888877764
No 187
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.70 E-value=1.5e-13 Score=103.44 Aligned_cols=228 Identities=14% Similarity=0.093 Sum_probs=144.5
Q ss_pred CeEEEEEcC-CCeEEE-------ecCCCeEEEEeccCCceeeeEE--eeccccceeEEEEeeC-CCEEEEEeCCCcEEEE
Q psy6859 5 PITHVVVTK-TDFVIT-------ASNDGHIKFWKKQEEGIEFVKH--FRSHLGVIHSICTNYN-GTLLCTVASDKAMKVF 73 (261)
Q Consensus 5 ~v~~~~~~~-~~~l~s-------~~~d~~i~iw~~~~~~~~~~~~--~~~~~~~v~~~~~~~~-~~~l~s~~~dg~v~~w 73 (261)
...+++|++ +.++++ +..++.|.+|+..++....... ..++...+.+++++++ ++++++. ..+.|.+|
T Consensus 19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~-~~~~l~~~ 97 (314)
T 1pjx_A 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD-MRLGLLVV 97 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE-TTTEEEEE
T ss_pred CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEE-CCCCEEEE
Confidence 457899998 777777 5778999999987653222111 0124467899999999 7655544 44478999
Q ss_pred Eccccceeee-eec----cCcceeEEEEeecCCceeeeeeecCCC---------------CeEEEEEcCCCceeeEEeec
Q psy6859 74 DVINFDMINM-IKL----DFTPLTVECIHYLGDAIPTAAVSDQDS---------------SRVHIYDCKGNDMINMIKLD 133 (261)
Q Consensus 74 d~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~s~~~d---------------~~i~i~d~~~~~~~~~~~~~ 133 (261)
|.. ++.... ... .......+.+.+++...++. ..+ +.|..||.. ++........
T Consensus 98 d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~ 171 (314)
T 1pjx_A 98 QTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITA----PAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAF 171 (314)
T ss_dssp ETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEE----CBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEE
T ss_pred eCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEe----cCcccccccccccccCCCCeEEEECCC-CCEEEeccCC
Confidence 987 665433 221 11223455666666543332 222 567777765 4443332211
Q ss_pred CCcceEEEEEEe----CCCCceEEEEecCCCeEEEEEccCCCc-----cceeeccCcc-cCeEEEEEcCCCCEEEEEcCC
Q psy6859 134 FTPLTVECIHYL----GDAIPTAAVSDQDSSHVHIYDCKGNGT-----PLHVLDRLHT-KPVVLIKFNPIYQVVVSVDKA 203 (261)
Q Consensus 134 ~~~~~~~~~~~~----~~~~~~~~~~~~~d~~i~i~d~~~~~~-----~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d 203 (261)
.....++++ |++.. ++++...++.|.+||....++ ....+. .+. ..+..++++++|+++++...+
T Consensus 172 ---~~~~~i~~~~~~d~dg~~-l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~~~~ 246 (314)
T 1pjx_A 172 ---QFPNGIAVRHMNDGRPYQ-LIVAETPTKKLWSYDIKGPAKIENKKVWGHIP-GTHEGGADGMDFDEDNNLLVANWGS 246 (314)
T ss_dssp ---SSEEEEEEEECTTSCEEE-EEEEETTTTEEEEEEEEETTEEEEEEEEEECC-CCSSCEEEEEEEBTTCCEEEEEETT
T ss_pred ---CCcceEEEecccCCCCCE-EEEEECCCCeEEEEECCCCCccccceEEEECC-CCCCCCCCceEECCCCCEEEEEcCC
Confidence 234678888 88753 355666689999999862232 222332 333 567889999999988877778
Q ss_pred CeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeec
Q psy6859 204 GILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISM 259 (261)
Q Consensus 204 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 259 (261)
+.|.+||.++ ++.+..+..+...+.+++|+|+|+.|+.++.
T Consensus 247 ~~i~~~d~~~---------------g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~ 287 (314)
T 1pjx_A 247 SHIEVFGPDG---------------GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEH 287 (314)
T ss_dssp TEEEEECTTC---------------BSCSEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred CEEEEEcCCC---------------CcEeEEEeCCCCCceeEEECCCCCEEEEEeC
Confidence 8999999753 3344444455578899999999996655543
No 188
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.68 E-value=1.3e-12 Score=97.40 Aligned_cols=225 Identities=10% Similarity=-0.018 Sum_probs=148.4
Q ss_pred CCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccccee
Q psy6859 3 RSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMI 81 (261)
Q Consensus 3 ~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~ 81 (261)
...+.++++.+ ++++++...++.|.+|+.. +... ...+..+...+.+++++++++++++...++.|..||.. ++.
T Consensus 14 ~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~- 89 (299)
T 2z2n_A 14 DTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-EYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII- 89 (299)
T ss_dssp SCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-
T ss_pred CCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-EecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-
Confidence 46789999999 7777766668999999987 4211 11222344678999999999888887778899999975 332
Q ss_pred eeeec--cCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC
Q psy6859 82 NMIKL--DFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS 159 (261)
Q Consensus 82 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 159 (261)
..+.. .......+.+.+++...++. ..++.|..||. +++.. .+........+..+.+.+++. ++++...+
T Consensus 90 ~~~~~~~~~~~~~~i~~~~~g~l~v~~----~~~~~i~~~d~-~g~~~-~~~~~~~~~~~~~i~~~~~g~--l~v~~~~~ 161 (299)
T 2z2n_A 90 KEYTLPNPDSAPYGITEGPNGDIWFTE----MNGNRIGRITD-DGKIR-EYELPNKGSYPSFITLGSDNA--LWFTENQN 161 (299)
T ss_dssp EEEECSSTTCCEEEEEECTTSCEEEEE----TTTTEEEEECT-TCCEE-EEECSSTTCCEEEEEECTTSC--EEEEETTT
T ss_pred EEEeCCCcCCCceeeEECCCCCEEEEe----cCCceEEEECC-CCCEE-EecCCCCCCCCceEEEcCCCC--EEEEeCCC
Confidence 23332 22233445555555433333 56789999998 44433 232222334678899999885 35666667
Q ss_pred CeEEEEEccCCCcccee-eccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCC
Q psy6859 160 SHVHIYDCKGNGTPLHV-LDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKN 238 (261)
Q Consensus 160 ~~i~i~d~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (261)
+.|..||. +++.... +. .....+..++++++|++.++...++.|.+||. ++.. . ......+
T Consensus 162 ~~i~~~~~--~g~~~~~~~~-~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~-------------~-~~~~~~~ 223 (299)
T 2z2n_A 162 NAIGRITE--SGDITEFKIP-TPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI-------------T-EFKIPTP 223 (299)
T ss_dssp TEEEEECT--TCCEEEEECS-STTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE-------------E-EEECSST
T ss_pred CEEEEEcC--CCcEEEeeCC-CCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE-------------E-EEECCCC
Confidence 89999997 3333322 22 34566889999999997777777889999997 3211 0 1112334
Q ss_pred ccceeeeeECCCCceEEEe
Q psy6859 239 KTYPSGLSFSPDGNKFVTI 257 (261)
Q Consensus 239 ~~~v~~~~~s~~~~~l~s~ 257 (261)
...+.+++++++|+++++.
T Consensus 224 ~~~~~~i~~~~~g~l~v~~ 242 (299)
T 2z2n_A 224 NARPHAITAGAGIDLWFTE 242 (299)
T ss_dssp TCCEEEEEECSTTCEEEEE
T ss_pred CCCceeEEECCCCCEEEec
Confidence 5678899999999866654
No 189
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.68 E-value=1.5e-13 Score=110.98 Aligned_cols=190 Identities=10% Similarity=0.019 Sum_probs=142.9
Q ss_pred CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcc--ccceeeeeeccCcce
Q psy6859 14 TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVI--NFDMINMIKLDFTPL 91 (261)
Q Consensus 14 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~--~~~~~~~~~~~~~~~ 91 (261)
+.++++...++.|.++|..+. +.+..+... ..+..+.|+||++++++++.|+.|.+||+. +++.+.++.....+
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~--~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P- 242 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTY--EIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEA- 242 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTC--CEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEE-
T ss_pred ceEEEEeCCCCeEEEEECCCC--eEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCC-
Confidence 346778888999999999987 667676633 356789999999999999999999999996 77888887765554
Q ss_pred eEEEEe----ecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecC--------C-cceEEEEEEeCCCCceEEEEecC
Q psy6859 92 TVECIH----YLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDF--------T-PLTVECIHYLGDAIPTAAVSDQD 158 (261)
Q Consensus 92 ~~~~~~----~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~ 158 (261)
..+.++ ++++++++. ...++.+.++|..+.+.+..+.... + ...+..+..++++.. +++....
T Consensus 243 ~~ia~s~~~~pDGk~l~v~---n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~-~vv~~~~ 318 (567)
T 1qks_A 243 RSIETSKMEGWEDKYAIAG---AYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPE-FIVNVKE 318 (567)
T ss_dssp EEEEECCSTTCTTTEEEEE---EEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSE-EEEEETT
T ss_pred ceeEEccccCCCCCEEEEE---EccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCE-EEEEecC
Confidence 455667 588877665 2457999999999999888776431 1 125677888887664 4566677
Q ss_pred CCeEEEEEccCCCcc--ceeeccCcccCeEEEEEcCCCCEEEEEc-CCCeEEEeecccc
Q psy6859 159 SSHVHIYDCKGNGTP--LHVLDRLHTKPVVLIKFNPIYQVVVSVD-KAGILEYWSGYKQ 214 (261)
Q Consensus 159 d~~i~i~d~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~ 214 (261)
.|.|.++|.. ..+. +..+ ........+.|+|++++++++. .++.|.++|+.++
T Consensus 319 ~g~v~~vd~~-~~~~~~v~~i--~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~ 374 (567)
T 1qks_A 319 TGKILLVDYT-DLNNLKTTEI--SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG 374 (567)
T ss_dssp TTEEEEEETT-CSSEEEEEEE--ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred CCeEEEEecC-CCccceeeee--eccccccCceECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 8999999987 4332 2233 2445677899999999876554 6788999999653
No 190
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.66 E-value=2.4e-12 Score=96.07 Aligned_cols=227 Identities=8% Similarity=-0.018 Sum_probs=148.6
Q ss_pred CCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccccee
Q psy6859 3 RSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMI 81 (261)
Q Consensus 3 ~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~ 81 (261)
...+.++++.+ +.++++...++.|..|+.+.. .....+......+..+++.++++++++...++.|..||. +++..
T Consensus 56 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~--~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~ 132 (299)
T 2z2n_A 56 DAKVMCLTISSDGEVWFTENAANKIGRITKKGI--IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR 132 (299)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTTSC--EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE
T ss_pred cCceeeEEECCCCCEEEeCCCCCeEEEECCCCc--EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE
Confidence 35688999998 777777777889999997632 212222224456889999999988887777889999998 55443
Q ss_pred eee-eccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCC
Q psy6859 82 NMI-KLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS 160 (261)
Q Consensus 82 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 160 (261)
... .........+.+.+++...++. ..++.|..||. +++... +........+..+.+++++. ++++...++
T Consensus 133 ~~~~~~~~~~~~~i~~~~~g~l~v~~----~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~ 204 (299)
T 2z2n_A 133 EYELPNKGSYPSFITLGSDNALWFTE----NQNNAIGRITE-SGDITE-FKIPTPASGPVGITKGNDDA--LWFVEIIGN 204 (299)
T ss_dssp EEECSSTTCCEEEEEECTTSCEEEEE----TTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSS--EEEEETTTT
T ss_pred EecCCCCCCCCceEEEcCCCCEEEEe----CCCCEEEEEcC-CCcEEE-eeCCCCCCcceeEEECCCCC--EEEEccCCc
Confidence 221 1122234455556565433332 56789999998 555433 32222334578899999886 366665678
Q ss_pred eEEEEEccCCCccce-eeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCc
Q psy6859 161 HVHIYDCKGNGTPLH-VLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNK 239 (261)
Q Consensus 161 ~i~i~d~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (261)
.|..||.. ++... ... .+...+.+++++++|++.++...++.|..||.. +. .....+..+.
T Consensus 205 ~i~~~~~~--g~~~~~~~~-~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~--------------~~~~~~~~~~ 266 (299)
T 2z2n_A 205 KIGRITTS--GEITEFKIP-TPNARPHAITAGAGIDLWFTEWGANKIGRLTSN-NI--------------IEEYPIQIKS 266 (299)
T ss_dssp EEEEECTT--CCEEEEECS-STTCCEEEEEECSTTCEEEEETTTTEEEEEETT-TE--------------EEEEECSSSS
T ss_pred eEEEECCC--CcEEEEECC-CCCCCceeEEECCCCCEEEeccCCceEEEECCC-Cc--------------eEEEeCCCCC
Confidence 99999983 33222 222 345678999999999977776678889999973 10 0011123345
Q ss_pred cceeeeeECCCCceEEEeec
Q psy6859 240 TYPSGLSFSPDGNKFVTISM 259 (261)
Q Consensus 240 ~~v~~~~~s~~~~~l~s~~~ 259 (261)
..+.++++ ++|++.++.+.
T Consensus 267 ~~~~~i~~-~~g~l~v~~~~ 285 (299)
T 2z2n_A 267 AEPHGICF-DGETIWFAMEC 285 (299)
T ss_dssp CCEEEEEE-CSSCEEEEETT
T ss_pred CccceEEe-cCCCEEEEecC
Confidence 67889999 88887776543
No 191
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.66 E-value=1.4e-14 Score=110.84 Aligned_cols=172 Identities=8% Similarity=0.104 Sum_probs=123.0
Q ss_pred CeEEEEEcC-CCeEEEecCCCeEEEEeccCCc---------eeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEE
Q psy6859 5 PITHVVVTK-TDFVITASNDGHIKFWKKQEEG---------IEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFD 74 (261)
Q Consensus 5 ~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd 74 (261)
+++.+++++ ..++++|+.+ .+++|+++... .+..... .+.+ |+.++| |+++|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 588999999 8889999887 45569876431 1222233 3566 999999 88899998 889999999
Q ss_pred ccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEE
Q psy6859 75 VINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAV 154 (261)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (261)
+.+............+.. .+.+....++.+ +.||.+.+||+.++.... + ...+.+++|+|++ ++
T Consensus 113 v~sl~~~~~~~~~~~~v~--~i~~~~p~~av~----~~dG~L~v~dl~~~~~~~-~-----~~~Vs~v~WSpkG----~~ 176 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVF--QLKNVNNTLVIL----NSVNDLSALDLRTKSTKQ-L-----AQNVTSFDVTNSQ----LA 176 (388)
T ss_dssp SSSTTCEEEEEECSSCEE--EEEECSSEEEEE----ETTSEEEEEETTTCCEEE-E-----EESEEEEEECSSE----EE
T ss_pred chhhhccCccceeeccee--eEEecCCCEEEE----ECCCCEEEEEccCCcccc-c-----cCCceEEEEcCCc----eE
Confidence 987654444433333332 333333334444 799999999999887643 1 2378999999999 45
Q ss_pred EecCCCeEEEEEccCCCcc--ceeec--------cCcccCeEEEEEcCCCCEEEE
Q psy6859 155 SDQDSSHVHIYDCKGNGTP--LHVLD--------RLHTKPVVLIKFNPIYQVVVS 199 (261)
Q Consensus 155 ~~~~d~~i~i~d~~~~~~~--~~~~~--------~~~~~~v~~~~~~~~~~~l~~ 199 (261)
.|..||++++|+.. .... .+++. .+|...|.+|.|.++++++++
T Consensus 177 vg~~dg~i~~~~~~-~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 177 VLLKDRSFQSFAWR-NGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEETTSCEEEEEEE-TTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEEcCCcEEEEcCC-CccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 67779999999887 5553 45552 036788999999999998876
No 192
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.66 E-value=5.2e-13 Score=107.87 Aligned_cols=236 Identities=9% Similarity=0.049 Sum_probs=154.2
Q ss_pred CeEEEEEcC-CCeEEEecCCCeEEEEecc--CCceeeeEEeeccccceeEEEEe----eCCCEEEEEeC-CCcEEEEEcc
Q psy6859 5 PITHVVVTK-TDFVITASNDGHIKFWKKQ--EEGIEFVKHFRSHLGVIHSICTN----YNGTLLCTVAS-DKAMKVFDVI 76 (261)
Q Consensus 5 ~v~~~~~~~-~~~l~s~~~d~~i~iw~~~--~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~s~~~-dg~v~~wd~~ 76 (261)
.+..+.|+| ++++++++.|+.|.+||+. +. +.+..+.... ....++|+ |||++++++.. ++++.++|..
T Consensus 198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~--~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~ 274 (567)
T 1qks_A 198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP--TTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE 274 (567)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEETTSSSC--CEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT
T ss_pred CccceEECCCCCEEEEEcCCCeEEEEECCCCCC--cEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECC
Confidence 466899999 8999999999999999996 44 5666666443 35799999 69999888775 5899999999
Q ss_pred ccceeeeeeccC----------c-ceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEe
Q psy6859 77 NFDMINMIKLDF----------T-PLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYL 145 (261)
Q Consensus 77 ~~~~~~~~~~~~----------~-~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (261)
+.+.+..+.... . ....+..++.+..++ ++-..+|.|.++|....+.+...... .......+.|+
T Consensus 275 t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~v---v~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~ 350 (567)
T 1qks_A 275 TLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFI---VNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLD 350 (567)
T ss_dssp TCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEE---EEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEEC
T ss_pred CCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEE---EEecCCCeEEEEecCCCccceeeeee-ccccccCceEC
Confidence 998888766422 1 122333344333222 12267899999998876543333222 12245688999
Q ss_pred CCCCceEEEEecCCCeEEEEEccCCCccceeecc----CcccCeEEEEEcCCCC-EEEEEc-CCCeEEEeecccccccCC
Q psy6859 146 GDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDR----LHTKPVVLIKFNPIYQ-VVVSVD-KAGILEYWSGYKQEFKFP 219 (261)
Q Consensus 146 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~ 219 (261)
|++.++ +++...++.|.++|+. +++.+..+.. .|...-..+ ++|++. ..+++. .++.|.++|..+.+..
T Consensus 351 pdgr~~-~va~~~sn~V~ViD~~-t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~-- 425 (567)
T 1qks_A 351 GSHRYF-ITAANARNKLVVIDTK-EGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHP-- 425 (567)
T ss_dssp TTSCEE-EEEEGGGTEEEEEETT-TTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCT--
T ss_pred CCCCEE-EEEeCCCCeEEEEECC-CCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCc--
Confidence 999974 4555568899999999 8887766651 232212122 688755 445543 5689999998642100
Q ss_pred eeeeeecccccceeecCCCccceeeeeECCCCceEEEee
Q psy6859 220 KCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTIS 258 (261)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 258 (261)
....+.++++......-..+..+|++++|.+..
T Consensus 426 ------~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~ 458 (567)
T 1qks_A 426 ------DNAWKILDSFPALGGGSLFIKTHPNSQYLYVDA 458 (567)
T ss_dssp ------TTBTSEEEEEECSCSCCCCEECCTTCSEEEEEC
T ss_pred ------cccCEEEEEEecCCCCCEEEEeCCCCCeEEEec
Confidence 001334455554333334577899999887754
No 193
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.66 E-value=9.1e-13 Score=98.54 Aligned_cols=226 Identities=8% Similarity=0.048 Sum_probs=144.9
Q ss_pred EEEEEcC--CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeee
Q psy6859 7 THVVVTK--TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMI 84 (261)
Q Consensus 7 ~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~ 84 (261)
-+..|+| +.++++...++.|..|+..+.. . ..+. ....+.+++++++++++++ . ++.|.+||..+++.....
T Consensus 16 Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~--~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~ 89 (297)
T 3g4e_A 16 ESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ--V-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLA 89 (297)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTCC--E-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEE
T ss_pred cCCeEECCCCEEEEEECCCCEEEEEECCCCc--E-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEE
Confidence 4678888 4567777788999999998752 2 2232 3467899999999995554 3 568999999877654332
Q ss_pred ecc----CcceeEEEEeecCCceeeeeeecC------CCCeEEEEEcCC-CceeeEEeecCCcceEEEEEEeCCCCceEE
Q psy6859 85 KLD----FTPLTVECIHYLGDAIPTAAVSDQ------DSSRVHIYDCKG-NDMINMIKLDFTPLTVECIHYLGDAIPTAA 153 (261)
Q Consensus 85 ~~~----~~~~~~~~~~~~~~~~~~~~~s~~------~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (261)
... ........+.++++..++. .... ....-.+|.+.. ++....... ......++|+|++.. ++
T Consensus 90 ~~~~~~~~~~~~di~~d~dG~l~~~~-~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~---~~~pngi~~spdg~~-ly 164 (297)
T 3g4e_A 90 TVDNDKKNNRFNDGKVDPAGRYFAGT-MAEETAPAVLERHQGALYSLFPDHHVKKYFDQ---VDISNGLDWSLDHKI-FY 164 (297)
T ss_dssp ECCTTCSSEEEEEEEECTTSCEEEEE-EECCSBTTBCCTTCEEEEEECTTSCEEEEEEE---ESBEEEEEECTTSCE-EE
T ss_pred ecCCCCCCCCCCCEEECCCCCEEEec-CCcccccccccCCCcEEEEEECCCCEEEEeec---cccccceEEcCCCCE-EE
Confidence 221 1223445566676633322 1110 012334444432 332222221 124578999999975 35
Q ss_pred EEecCCCeEEEEEcc-CCCcc-----ceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecc
Q psy6859 154 VSDQDSSHVHIYDCK-GNGTP-----LHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESK 227 (261)
Q Consensus 154 ~~~~~d~~i~i~d~~-~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 227 (261)
++.+.++.|.+||+. .++.. +..+. .....+..++++++|++.++....+.|..||..
T Consensus 165 v~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~-~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~--------------- 228 (297)
T 3g4e_A 165 YIDSLSYSVDAFDYDLQTGQISNRRSVYKLE-KEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPV--------------- 228 (297)
T ss_dssp EEEGGGTEEEEEEECTTTCCEEEEEEEEECC-GGGCEEEEEEEBTTSCEEEEEETTTEEEEECTT---------------
T ss_pred EecCCCCcEEEEeccCCCCcccCcEEEEECC-CCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCC---------------
Confidence 667778999999973 24432 22232 334567899999999877777778889999984
Q ss_pred cccceeecCCCccceeeeeEC-CCCceEEEeec
Q psy6859 228 LDTDLFEFAKNKTYPSGLSFS-PDGNKFVTISM 259 (261)
Q Consensus 228 ~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~~~ 259 (261)
+++.+..+..+...+++++|. |+++.|..++.
T Consensus 229 tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 229 TGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp TCCEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred CceEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 356667776666789999998 88887665543
No 194
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.66 E-value=7.7e-13 Score=103.19 Aligned_cols=241 Identities=7% Similarity=-0.046 Sum_probs=148.1
Q ss_pred CCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCC--cEEEEEccccce
Q psy6859 4 SPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDK--AMKVFDVINFDM 80 (261)
Q Consensus 4 ~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg--~v~~wd~~~~~~ 80 (261)
.....|+|++ ++++++...++.|++|+.+++ ......... .... ++|+++++.|+++..++ .|.+++...+..
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g--~~~~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDN--KVTTVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTT--EEEEEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCC--EEEEeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce
Confidence 3567899999 777777778899999999876 443333332 2334 99999999999888766 788888776554
Q ss_pred eeee----eccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEe--ecCCcceE-E-EEEEeCCCCceE
Q psy6859 81 INMI----KLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIK--LDFTPLTV-E-CIHYLGDAIPTA 152 (261)
Q Consensus 81 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~--~~~~~~~~-~-~~~~~~~~~~~~ 152 (261)
...+ .........+.+.+.+..++.. ..++.|..||..++....... .......- . .++++|++.. +
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~----d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~-l 281 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYFV----DSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSN-F 281 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEEE----CTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTE-E
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEEE----ECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCE-E
Confidence 3333 1122233456677745555554 568899999998775322200 11111111 2 8999996443 4
Q ss_pred EEEecCCCeEEEEEccCCCccceeeccCc---------------ccCeEEEEEcCCCCEEEEEc-CCCeEEEeecccccc
Q psy6859 153 AVSDQDSSHVHIYDCKGNGTPLHVLDRLH---------------TKPVVLIKFNPIYQVVVSVD-KAGILEYWSGYKQEF 216 (261)
Q Consensus 153 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~ 216 (261)
+++...++.|+.|+.. . . +..+. ++ -.....++++|+|+++++-. .++.|+.|++.++..
T Consensus 282 yv~d~~~~~I~~~~~~-g-~-~~~~~-g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v 357 (409)
T 3hrp_A 282 YMSDQNLSSVYKITPD-G-E-CEWFC-GSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV 357 (409)
T ss_dssp EEEETTTTEEEEECTT-C-C-EEEEE-ECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE
T ss_pred EEEeCCCCEEEEEecC-C-C-EEEEE-eCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE
Confidence 6777778999999975 2 2 22222 22 23478999999999777777 889999999654321
Q ss_pred cCCeeeeeecccccce-eecCCCccceeeeeECCCCceEEEeec
Q psy6859 217 KFPKCVHFESKLDTDL-FEFAKNKTYPSGLSFSPDGNKFVTISM 259 (261)
Q Consensus 217 ~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~s~~~ 259 (261)
..-.... ...+..- ......-..+..++++|+|.++++-..
T Consensus 358 ~~~~g~~--~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~ 399 (409)
T 3hrp_A 358 STVAGQV--DVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAW 399 (409)
T ss_dssp EEEEECT--TCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEEST
T ss_pred EEEeCCC--CCCCcCCCChhceEeCCceEEEEcCCCCEEEEECC
Confidence 1000000 0000000 000011246789999999877766543
No 195
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.64 E-value=2.3e-13 Score=103.18 Aligned_cols=209 Identities=11% Similarity=0.045 Sum_probs=140.3
Q ss_pred cCCCeEEEEeccCCceeeeEEee------ccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcceeEE
Q psy6859 21 SNDGHIKFWKKQEEGIEFVKHFR------SHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVE 94 (261)
Q Consensus 21 ~~d~~i~iw~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~ 94 (261)
+.+++|.++|.+++ +....+. ........+.+. +++.+++...++.|.+||..+++.+.++.....+ ..+
T Consensus 14 ~~~~~l~~~d~~t~--~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p-~~i 89 (328)
T 3dsm_A 14 YSNATLSYYDPATC--EVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSP-RYI 89 (328)
T ss_dssp SCCBEEEEEETTTT--EEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSE-EEE
T ss_pred CCCceEEEEECCCC--EEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCC-cEE
Confidence 45899999999986 4443331 111335677774 4556666667899999999999998887644333 445
Q ss_pred EEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCC---cceEEEEEEeCCCCceEEEEec-CCCeEEEEEccCC
Q psy6859 95 CIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFT---PLTVECIHYLGDAIPTAAVSDQ-DSSHVHIYDCKGN 170 (261)
Q Consensus 95 ~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~d~~i~i~d~~~~ 170 (261)
.+++++ .++.. ...++.|.+||+.+++....+..... ......+.+. ++ . ++++.. .++.|.++|.. +
T Consensus 90 ~~~~~g-~lyv~---~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~-~~-~-lyv~~~~~~~~v~viD~~-t 161 (328)
T 3dsm_A 90 HFLSDE-KAYVT---QIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQY-GK-Y-VYVNCWSYQNRILKIDTE-T 161 (328)
T ss_dssp EEEETT-EEEEE---EBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEE-TT-E-EEEEECTTCCEEEEEETT-T
T ss_pred EEeCCC-eEEEE---ECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEE-CC-E-EEEEcCCCCCEEEEEECC-C
Confidence 565666 44443 13689999999999988877775440 0022345552 33 2 345544 48899999998 8
Q ss_pred CccceeeccCcccCeEEEEEcCCCCEEEEEcCC----------CeEEEeecccccccCCeeeeeecccccceeecCCC-c
Q psy6859 171 GTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKA----------GILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKN-K 239 (261)
Q Consensus 171 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 239 (261)
++.+..+. . ......++++|+|++++++..+ +.|.++|..+ .+....+... .
T Consensus 162 ~~~~~~i~-~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t---------------~~v~~~~~~~~g 224 (328)
T 3dsm_A 162 DKVVDELT-I-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAET---------------FTVEKQFKFKLG 224 (328)
T ss_dssp TEEEEEEE-C-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTT---------------TEEEEEEECCTT
T ss_pred CeEEEEEE-c-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCC---------------CeEEEEEecCCC
Confidence 88888775 3 3445789999999977776654 7899999854 3333333321 2
Q ss_pred cceeeeeECCCCceEEEee
Q psy6859 240 TYPSGLSFSPDGNKFVTIS 258 (261)
Q Consensus 240 ~~v~~~~~s~~~~~l~s~~ 258 (261)
..+..++|+|++++|.++.
T Consensus 225 ~~p~~la~~~d~~~lyv~~ 243 (328)
T 3dsm_A 225 DWPSEVQLNGTRDTLYWIN 243 (328)
T ss_dssp CCCEEEEECTTSCEEEEES
T ss_pred CCceeEEEecCCCEEEEEc
Confidence 3678999999999887653
No 196
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.63 E-value=3.1e-13 Score=112.94 Aligned_cols=196 Identities=7% Similarity=-0.094 Sum_probs=129.3
Q ss_pred cccceeEEEEeeCCCEEEEEeCCC-----cEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCC-----
Q psy6859 45 HLGVIHSICTNYNGTLLCTVASDK-----AMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS----- 114 (261)
Q Consensus 45 ~~~~v~~~~~~~~~~~l~s~~~dg-----~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~----- 114 (261)
|...+..++|+|||++|+.+..++ .|++||+.+++...... .........++++++.++.. +.++
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~-~~~~~~~~~wspDg~~l~~~----~~~~~~~~~ 197 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYN----AYPQQDGKS 197 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEE----ECCCCSSCC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc-cCcccceEEEEeCCCEEEEE----EECCccccc
Confidence 444688999999999998776543 89999999988765322 11223457788899887766 3333
Q ss_pred -----------eEEEEEcCCCcee--eEEeecCCcceEEEEEEeCCCCceEEEEecC---CCeEEEEEccCC------Cc
Q psy6859 115 -----------RVHIYDCKGNDMI--NMIKLDFTPLTVECIHYLGDAIPTAAVSDQD---SSHVHIYDCKGN------GT 172 (261)
Q Consensus 115 -----------~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~i~i~d~~~~------~~ 172 (261)
.|.+|++.+++.. ..+....++.....+.++|++.++++.+... +..|++||+. + +.
T Consensus 198 ~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~-~~~~~~~~~ 276 (710)
T 2xdw_A 198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQ-QESNGITGI 276 (710)
T ss_dssp SSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGG-GSSSSSCSS
T ss_pred cccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECc-ccccccCCc
Confidence 3999999887633 2233333345678899999999754444311 5789999997 4 32
Q ss_pred -cceeeccCcccCeEEEEEcCCCCEEEEEcC----CCeEEEeecccccccCCeeeeeecccccceeecCCCcc--ceeee
Q psy6859 173 -PLHVLDRLHTKPVVLIKFNPIYQVVVSVDK----AGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT--YPSGL 245 (261)
Q Consensus 173 -~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~ 245 (261)
....+. .+...+.. .|+|+|+.|+..+. .+.|.+||+.+.. ......+..|.. .+..+
T Consensus 277 ~~~~~l~-~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~-------------~~~~~~l~~~~~~~~~~~~ 341 (710)
T 2xdw_A 277 LKWVKLI-DNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPE-------------ESKWKVLVPEHEKDVLEWV 341 (710)
T ss_dssp CCCEEEE-CSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCC-------------GGGCEEEECCCSSCEEEEE
T ss_pred cceEEee-CCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCC-------------cccceeccCCCCCCeEEEE
Confidence 455565 55555554 48899987765543 3368999985421 011233333433 67888
Q ss_pred eECCCCceEEEeecCC
Q psy6859 246 SFSPDGNKFVTISMDR 261 (261)
Q Consensus 246 ~~s~~~~~l~s~~~Dg 261 (261)
+|++++.++++...|+
T Consensus 342 ~~~~~~~lv~~~~~~g 357 (710)
T 2xdw_A 342 ACVRSNFLVLCYLHDV 357 (710)
T ss_dssp EEETTTEEEEEEEETT
T ss_pred EEEcCCEEEEEEEECC
Confidence 9998878888777664
No 197
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.62 E-value=3.4e-13 Score=99.27 Aligned_cols=196 Identities=9% Similarity=0.020 Sum_probs=132.6
Q ss_pred CCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEee-ccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccccee
Q psy6859 4 SPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFR-SHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMI 81 (261)
Q Consensus 4 ~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~ 81 (261)
..+.++++.+ ++++++.. ++.|.+|+.... .. ..+. .....+..++++++++++++...++.|.+|+..+....
T Consensus 67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~--~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~ 142 (270)
T 1rwi_B 67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSN--NQ-TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT 142 (270)
T ss_dssp CSCCCEEECTTCCEEEEET-TTEEEEECTTCS--CC-EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCE
T ss_pred CCcceeEECCCCCEEEEcC-CCEEEEEeCCCc--eE-eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeE
Confidence 4577899998 77666655 889999998764 22 2222 22356789999999988887777889999976554433
Q ss_pred eeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCe
Q psy6859 82 NMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSH 161 (261)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 161 (261)
............+.+.+++...++. ..++.|.+||..+......... ....+..+++++++. ++++...++.
T Consensus 143 ~~~~~~~~~p~~i~~~~~g~l~v~~----~~~~~i~~~~~~~~~~~~~~~~--~~~~p~~i~~d~~g~--l~v~~~~~~~ 214 (270)
T 1rwi_B 143 VLPFTGLNDPDGVAVDNSGNVYVTD----TDNNRVVKLEAESNNQVVLPFT--DITAPWGIAVDEAGT--VYVTEHNTNQ 214 (270)
T ss_dssp ECCCCSCCSCCCEEECTTCCEEEEE----GGGTEEEEECTTTCCEEECCCS--SCCSEEEEEECTTCC--EEEEETTTSC
T ss_pred eeccccCCCceeEEEeCCCCEEEEE----CCCCEEEEEecCCCceEeeccc--CCCCceEEEECCCCC--EEEEECCCCc
Confidence 2222222233456666666533332 4578999999887654332211 124578899999984 3666666889
Q ss_pred EEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859 162 VHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK 213 (261)
Q Consensus 162 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 213 (261)
|.+||.. .... ......+...+.+++++|+|+++++...++.|+++++..
T Consensus 215 v~~~~~~-~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 215 VVKLLAG-STTS-TVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE 264 (270)
T ss_dssp EEEECTT-CSCC-EECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred EEEEcCC-CCcc-eeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCC
Confidence 9999986 4333 223212335789999999999888888999999999854
No 198
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.61 E-value=2.5e-11 Score=90.54 Aligned_cols=223 Identities=9% Similarity=-0.027 Sum_probs=147.5
Q ss_pred CCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceee
Q psy6859 4 SPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMIN 82 (261)
Q Consensus 4 ~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~ 82 (261)
..+.++++.+ ++++++...++.|.+|+.. +.... ..+..+...+..+++.++++++++...++.|..+|.. ++..
T Consensus 20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~- 95 (300)
T 2qc5_A 20 SGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT- 95 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-
T ss_pred CCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-
Confidence 4678999998 7777777778999999987 42221 2233334678899999999888877668889999987 5543
Q ss_pred eeecc--CcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCC
Q psy6859 83 MIKLD--FTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS 160 (261)
Q Consensus 83 ~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 160 (261)
.+... ......+.+.+++...++. ..++.|..+|.. ++.. .+........+..+.+.+++. ++++...++
T Consensus 96 ~~~~~~~~~~~~~i~~~~~g~l~v~~----~~~~~i~~~~~~-g~~~-~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~ 167 (300)
T 2qc5_A 96 EYPLPQPDSGPYGITEGLNGDIWFTQ----LNGDRIGKLTAD-GTIY-EYDLPNKGSYPAFITLGSDNA--LWFTENQNN 167 (300)
T ss_dssp EEECSSTTCCEEEEEECSTTCEEEEE----TTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECTTSS--EEEEETTTT
T ss_pred EecCCCCCCCCccceECCCCCEEEEc----cCCCeEEEECCC-CCEE-EccCCCCCCCceeEEECCCCC--EEEEecCCC
Confidence 33322 2334455555555543333 557889999987 5433 333332334678899999886 366666678
Q ss_pred eEEEEEccCCCccce-eeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccce-eecCCC
Q psy6859 161 HVHIYDCKGNGTPLH-VLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDL-FEFAKN 238 (261)
Q Consensus 161 ~i~i~d~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 238 (261)
.|..||.. ++... ... .....+..++++++|++.++....+.|.+||.. + +.. ..+..+
T Consensus 168 ~i~~~~~~--g~~~~~~~~-~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g---------------~~~~~~~~~~ 228 (300)
T 2qc5_A 168 SIGRITNT--GKLEEYPLP-TNAAAPVGITSGNDGALWFVEIMGNKIGRITTT-G---------------EISEYDIPTP 228 (300)
T ss_dssp EEEEECTT--CCEEEEECS-STTCCEEEEEECTTSSEEEEETTTTEEEEECTT-C---------------CEEEEECSST
T ss_pred eEEEECCC--CcEEEeeCC-CCCCCcceEEECCCCCEEEEccCCCEEEEEcCC-C---------------cEEEEECCCC
Confidence 89999974 33322 222 344568999999999877777777889999972 1 111 112234
Q ss_pred ccceeeeeECCCCceEEEe
Q psy6859 239 KTYPSGLSFSPDGNKFVTI 257 (261)
Q Consensus 239 ~~~v~~~~~s~~~~~l~s~ 257 (261)
...+.+++++++|++.++.
T Consensus 229 ~~~~~~i~~d~~g~l~v~~ 247 (300)
T 2qc5_A 229 NARPHAITAGKNSEIWFTE 247 (300)
T ss_dssp TCCEEEEEECSTTCEEEEE
T ss_pred CCCceEEEECCCCCEEEec
Confidence 4567889999998866654
No 199
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.61 E-value=3.3e-13 Score=113.26 Aligned_cols=229 Identities=9% Similarity=-0.062 Sum_probs=143.6
Q ss_pred CCeEEEEEcC-CCeEEEecCC-----CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCc--------
Q psy6859 4 SPITHVVVTK-TDFVITASND-----GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKA-------- 69 (261)
Q Consensus 4 ~~v~~~~~~~-~~~l~s~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~-------- 69 (261)
..+..++||| +++|+.++.+ ..|++||+.++. .+.. ..+...+..++|+|| +.|+.++.++.
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~--~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGK--PLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCC--EEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC--CCCc-cCCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 3678899999 8888876543 469999999873 3322 112223468899999 88888876654
Q ss_pred ------EEEEEccccce--eeeeeccCc--ceeEEEEeecCCceeeeeeec-CCCCeEEEEEcCCC--ceeeEEeecCCc
Q psy6859 70 ------MKVFDVINFDM--INMIKLDFT--PLTVECIHYLGDAIPTAAVSD-QDSSRVHIYDCKGN--DMINMIKLDFTP 136 (261)
Q Consensus 70 ------v~~wd~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~-~~d~~i~i~d~~~~--~~~~~~~~~~~~ 136 (261)
|++|++.+++. ...+..... ......++++++.++.....+ .....|.+||+.++ +....+.....
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~- 317 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLK- 317 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSS-
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCC-
Confidence 88999877652 222222222 245667888888777652221 13568999999876 31344433322
Q ss_pred ceEEEEEEeCCCCceEEEEec--CCCeEEEEEccCCC--ccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecc
Q psy6859 137 LTVECIHYLGDAIPTAAVSDQ--DSSHVHIYDCKGNG--TPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGY 212 (261)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~--~d~~i~i~d~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 212 (261)
..... +.|++..+++.+.. .++.|.+||+. ++ .....+. .+...+..+.++ ++.++++...|+..+||.+.
T Consensus 318 -~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~-~~~~~~~~l~~-~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 318 -AQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLS-GSTPRFDTVVP-ESKDNLESVGIA-GNRLFASYIHDAKSQVLAFD 392 (741)
T ss_dssp -SCEEE-EEEETTEEEEEECTTCTTCEEEEEECS-SSSCEEEEEEC-CCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEE
T ss_pred -ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCC-CCccccEEEec-CCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 12222 24777764444321 24569999987 53 2333343 455557778887 56677888889988888663
Q ss_pred cccccCCeeeeeecccccceeecCC-CccceeeeeECCCCceEEE
Q psy6859 213 KQEFKFPKCVHFESKLDTDLFEFAK-NKTYPSGLSFSPDGNKFVT 256 (261)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s 256 (261)
. .++....+.. ....+..+.++|+++.|+.
T Consensus 393 ~--------------~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~ 423 (741)
T 1yr2_A 393 L--------------DGKPAGAVSLPGIGSASGLSGRPGDRHAYL 423 (741)
T ss_dssp T--------------TSCEEEECBCSSSCEEEEEECCBTCSCEEE
T ss_pred C--------------CCCceeeccCCCCeEEEEeecCCCCCEEEE
Confidence 1 1333444443 3567888999999886663
No 200
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.60 E-value=1.1e-11 Score=93.99 Aligned_cols=223 Identities=7% Similarity=-0.046 Sum_probs=139.8
Q ss_pred eEEEEEcC-C-CeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeee
Q psy6859 6 ITHVVVTK-T-DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINM 83 (261)
Q Consensus 6 v~~~~~~~-~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~ 83 (261)
..+.+|+| + .++++...++.|..|+.+++ +. ..+. ....+.+++|+++++++++. .+ .|.+||..+++....
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~--~~-~~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~ 124 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASG--RK-TVHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLH 124 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTT--EE-EEEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCC--cE-EEEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEE
Confidence 35678998 4 46667777899999998875 22 2232 34678999999999877754 44 499999887765432
Q ss_pred eecc----CcceeEEEEeecCCceeeeeeec---CCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEe
Q psy6859 84 IKLD----FTPLTVECIHYLGDAIPTAAVSD---QDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSD 156 (261)
Q Consensus 84 ~~~~----~~~~~~~~~~~~~~~~~~~~~s~---~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (261)
.... ........+.++++..++. ... ...+.|..++ +++....... ......++|+|++.. ++++.
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~-~~~~~~~~~~~l~~~~--~g~~~~~~~~---~~~~~~i~~s~dg~~-lyv~~ 197 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGT-MGRKAETGAGSIYHVA--KGKVTKLFAD---ISIPNSICFSPDGTT-GYFVD 197 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEE-EETTCCTTCEEEEEEE--TTEEEEEEEE---ESSEEEEEECTTSCE-EEEEE
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEe-CCCcCCCCceEEEEEe--CCcEEEeeCC---CcccCCeEEcCCCCE-EEEEE
Confidence 2211 1223455666666533322 100 0124566666 4443322221 123568899999975 34566
Q ss_pred cCCCeEEEEEcc-CCC-cc-----ceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccc
Q psy6859 157 QDSSHVHIYDCK-GNG-TP-----LHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLD 229 (261)
Q Consensus 157 ~~d~~i~i~d~~-~~~-~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 229 (261)
+.++.|.+||+. .++ .. +..+. .....+..++++++|.+.++...++.|..||.. +
T Consensus 198 ~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~-~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~----------------g 260 (326)
T 2ghs_A 198 TKVNRLMRVPLDARTGLPTGKAEVFIDST-GIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD----------------G 260 (326)
T ss_dssp TTTCEEEEEEBCTTTCCBSSCCEEEEECT-TSSSEEEEEEECTTSCEEEEEETTTEEEEECTT----------------C
T ss_pred CCCCEEEEEEcccccCCcccCceEEEECC-CCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC----------------C
Confidence 667899999984 133 21 22222 234557889999999877766667889999873 3
Q ss_pred cceeecCCCccceeeeeEC-CCCceEEEee
Q psy6859 230 TDLFEFAKNKTYPSGLSFS-PDGNKFVTIS 258 (261)
Q Consensus 230 ~~~~~~~~~~~~v~~~~~s-~~~~~l~s~~ 258 (261)
+.+..+..+...+.+++|+ |+++.|+.++
T Consensus 261 ~~~~~i~~~~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 261 NHIARYEVPGKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp CEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred CEEEEEECCCCCcEEEEEecCCCCEEEEEe
Confidence 4444555556679999998 8988775554
No 201
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.60 E-value=2.3e-11 Score=90.77 Aligned_cols=225 Identities=10% Similarity=0.034 Sum_probs=146.9
Q ss_pred CCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceee
Q psy6859 4 SPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMIN 82 (261)
Q Consensus 4 ~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~ 82 (261)
..+.++++.+ ++++++...++.|..++.. +. .....+......+.++++.++++++++...++.|..+|.. ++...
T Consensus 62 ~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~ 138 (300)
T 2qc5_A 62 AKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG-FTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYE 138 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEE
T ss_pred CcceeEEECCCCCEEEEecCCCeEEEECCC-CC-eEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEE
Confidence 5688899998 7777777778899999987 42 2222222234568899999999888877778899999986 55442
Q ss_pred e-eeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCe
Q psy6859 83 M-IKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSH 161 (261)
Q Consensus 83 ~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 161 (261)
. +.........+.+.++++..++. ..++.|..+|. +++... +........+..+.+++++. ++++....+.
T Consensus 139 ~~~~~~~~~~~~i~~d~~g~l~v~~----~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~ 210 (300)
T 2qc5_A 139 YDLPNKGSYPAFITLGSDNALWFTE----NQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGA--LWFVEIMGNK 210 (300)
T ss_dssp EECSSTTCCEEEEEECTTSSEEEEE----TTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSS--EEEEETTTTE
T ss_pred ccCCCCCCCceeEEECCCCCEEEEe----cCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCC--EEEEccCCCE
Confidence 2 11122334455565666533322 45788999998 454433 33333334678899999885 3556556778
Q ss_pred EEEEEccCCCccce-eeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCcc
Q psy6859 162 VHIYDCKGNGTPLH-VLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT 240 (261)
Q Consensus 162 i~i~d~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (261)
|.+||.. ++... .+. .....+.+++++++|++.++...++.|..||.. +.. ....+.....
T Consensus 211 i~~~~~~--g~~~~~~~~-~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~--------------~~~~~~~~~~ 272 (300)
T 2qc5_A 211 IGRITTT--GEISEYDIP-TPNARPHAITAGKNSEIWFTEWGANQIGRITND-NTI--------------QEYQLQTENA 272 (300)
T ss_dssp EEEECTT--CCEEEEECS-STTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE--------------EEEECCSTTC
T ss_pred EEEEcCC--CcEEEEECC-CCCCCceEEEECCCCCEEEeccCCCeEEEECCC-CcE--------------EEEECCccCC
Confidence 9999974 33322 232 345678999999999977776677899999973 110 0111222345
Q ss_pred ceeeeeECCCCceEEEe
Q psy6859 241 YPSGLSFSPDGNKFVTI 257 (261)
Q Consensus 241 ~v~~~~~s~~~~~l~s~ 257 (261)
.+.+++++++|++.++.
T Consensus 273 ~~~~i~~~~~g~l~v~~ 289 (300)
T 2qc5_A 273 EPHGITFGKDGSVWFAL 289 (300)
T ss_dssp CCCCEEECTTSCEEEEC
T ss_pred ccceeEeCCCCCEEEEc
Confidence 68899999999876654
No 202
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.60 E-value=2.8e-13 Score=103.78 Aligned_cols=172 Identities=9% Similarity=0.093 Sum_probs=120.8
Q ss_pred ceeEEEEeeCCCEEEEEeCCCcEEEEEccccc-----------eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeE
Q psy6859 48 VIHSICTNYNGTLLCTVASDKAMKVFDVINFD-----------MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRV 116 (261)
Q Consensus 48 ~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i 116 (261)
+++.+++++...++++|+.+ .+++|++.+.+ .......+. +..+.+ ++..++.+ .++.|
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~--V~~l~f--d~~~L~v~-----~~~~l 108 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD--VIFVCF--HGDQVLVS-----TRNAL 108 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT--EEEEEE--ETTEEEEE-----ESSEE
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC--eeEEEE--CCCEEEEE-----cCCcE
Confidence 68999999999999999988 56679976543 112223232 445555 66555443 67999
Q ss_pred EEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCE
Q psy6859 117 HIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQV 196 (261)
Q Consensus 117 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 196 (261)
++||+++.......... ...+..+.+.+.. ++.++.||.|.+||+. .+.... +...|++++|+|+|
T Consensus 109 ~v~dv~sl~~~~~~~~~--~~~v~~i~~~~p~----~av~~~dG~L~v~dl~-~~~~~~-----~~~~Vs~v~WSpkG-- 174 (388)
T 1xip_A 109 YSLDLEELSEFRTVTSF--EKPVFQLKNVNNT----LVILNSVNDLSALDLR-TKSTKQ-----LAQNVTSFDVTNSQ-- 174 (388)
T ss_dssp EEEESSSTTCEEEEEEC--SSCEEEEEECSSE----EEEEETTSEEEEEETT-TCCEEE-----EEESEEEEEECSSE--
T ss_pred EEEEchhhhccCcccee--ecceeeEEecCCC----EEEEECCCCEEEEEcc-CCcccc-----ccCCceEEEEcCCc--
Confidence 99999877654444433 2346677776553 5666789999999998 655432 34689999999999
Q ss_pred EEEEcCCCeEEEeecccccccCCeeeeeecccccceeec------C---CCccceeeeeECCCCceEEE
Q psy6859 197 VVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEF------A---KNKTYPSGLSFSPDGNKFVT 256 (261)
Q Consensus 197 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~v~~~~~s~~~~~l~s 256 (261)
++.|..||.+++|+...... ....++ . +|...|.++.|.+++.+|++
T Consensus 175 ~~vg~~dg~i~~~~~~~~~~-------------~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 175 LAVLLKDRSFQSFAWRNGEM-------------EKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEEEETTSCEEEEEEETTEE-------------EEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred eEEEEcCCcEEEEcCCCccc-------------cccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 67888999999998754210 002222 2 47789999999999998886
No 203
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.59 E-value=5.6e-13 Score=111.09 Aligned_cols=228 Identities=7% Similarity=-0.084 Sum_probs=135.2
Q ss_pred C-CCeEEEecCCC---eEEEEecc--CCceeeeEEe----eccccceeEEEEeeCCCEEE-----EEeCCCcEEEEEccc
Q psy6859 13 K-TDFVITASNDG---HIKFWKKQ--EEGIEFVKHF----RSHLGVIHSICTNYNGTLLC-----TVASDKAMKVFDVIN 77 (261)
Q Consensus 13 ~-~~~l~s~~~d~---~i~iw~~~--~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~-----s~~~dg~v~~wd~~~ 77 (261)
| |++++....++ .-.+|... .+..+.+... .+|...+..++|+|||++|+ .|+.+..|++||+.+
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t 156 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS 156 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence 5 67666554433 34455543 3321222111 23555789999999999998 344456899999999
Q ss_pred cceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCe-------------EEEEEcCCCcee--eEEeecCCcceEEEE
Q psy6859 78 FDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSR-------------VHIYDCKGNDMI--NMIKLDFTPLTVECI 142 (261)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~-------------i~i~d~~~~~~~--~~~~~~~~~~~~~~~ 142 (261)
++.+..............++++++.++.. +.+.. |++|++.++... ..+....++..+..+
T Consensus 157 g~~~~~~~~~~~~~~~~~wspDg~~l~~~----~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~ 232 (695)
T 2bkl_A 157 GEWSKVDVIEGGKYATPKWTPDSKGFYYE----WLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQS 232 (695)
T ss_dssp CCBCSSCCBSCCTTCCCEECTTSSEEEEE----ECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEE
T ss_pred CCCcCCcccCcccccceEEecCCCEEEEE----EecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEE
Confidence 88651111222212467788898877766 44443 999999987632 333333344577899
Q ss_pred EEeCCCCceEEEEecC--CCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEc---CCCeEEEeeccccccc
Q psy6859 143 HYLGDAIPTAAVSDQD--SSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVD---KAGILEYWSGYKQEFK 217 (261)
Q Consensus 143 ~~~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~ 217 (261)
.++|++.++++.+... ...|+++|.. ++ ....+. .+...+....+ ++|++++... .++.|.+||+.++..
T Consensus 233 ~~SpDG~~l~~~~~~~~~~~~l~~~~~~-~~-~~~~l~-~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~- 307 (695)
T 2bkl_A 233 DLSRDGKYLFVYILRGWSENDVYWKRPG-EK-DFRLLV-KGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPAR- 307 (695)
T ss_dssp EECTTSCCEEEEEEETTTEEEEEEECTT-CS-SCEEEE-ECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSG-
T ss_pred EECCCCCEEEEEEeCCCCceEEEEEcCC-CC-ceEEee-cCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCc-
Confidence 9999998754443332 1256666654 34 344454 45555666666 6666444444 357899999854210
Q ss_pred CCeeeeeecccccceeecCCC-ccceeeeeECCCCceEEEeecCC
Q psy6859 218 FPKCVHFESKLDTDLFEFAKN-KTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
......+..+ ...+..++|+ ++.++++...|+
T Consensus 308 -----------~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg 340 (695)
T 2bkl_A 308 -----------ASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDA 340 (695)
T ss_dssp -----------GGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETT
T ss_pred -----------cCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECC
Confidence 0012222222 4567778888 667777776654
No 204
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.59 E-value=1.1e-11 Score=95.47 Aligned_cols=219 Identities=9% Similarity=-0.077 Sum_probs=139.6
Q ss_pred EEEEcC-CCeEEEec----------CCCeEEEEeccCCceeeeEEeecc-------ccceeEEEEeeCCCEEEEEeC--C
Q psy6859 8 HVVVTK-TDFVITAS----------NDGHIKFWKKQEEGIEFVKHFRSH-------LGVIHSICTNYNGTLLCTVAS--D 67 (261)
Q Consensus 8 ~~~~~~-~~~l~s~~----------~d~~i~iw~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~s~~~--d 67 (261)
.++++| ++.++.+. .++.|.+||..+. +.+..+.-. ......+.|+|||++|+.+.. +
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~--~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~ 147 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF--LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAG 147 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC--cEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCC
Confidence 789999 88777765 3678999999875 455544321 123458899999999998874 4
Q ss_pred CcEEEEEccccceeee-eeccCcceeEEEEeecCCce-eeeeeecCCCCeEEEEEcCCCceeeEEe-----ecCCcceEE
Q psy6859 68 KAMKVFDVINFDMINM-IKLDFTPLTVECIHYLGDAI-PTAAVSDQDSSRVHIYDCKGNDMINMIK-----LDFTPLTVE 140 (261)
Q Consensus 68 g~v~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~d~~i~i~d~~~~~~~~~~~-----~~~~~~~~~ 140 (261)
+.|.++| .+++.+.. +..... ..+.+.+... .+. +.|+.+.++|. +++...... ....+ ...
T Consensus 148 ~~v~viD-~t~~~~~~~i~~~~~----~~~~~~~~~~~~~~----~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p-~~~ 216 (373)
T 2mad_H 148 PAVGLVV-QGGSSDDQLLSSPTC----YHIHPGAPSTFYLL----CAQGGLAKTDH-AGGAAGAGLVGAMLTAAQN-LLT 216 (373)
T ss_pred CeEEEEE-CCCCEEeEEcCCCce----EEEEeCCCceEEEE----cCCCCEEEEEC-CCcEEEEEeccccccCCcc-eee
Confidence 7899999 99988877 654322 2334444433 333 67999999999 776653322 11111 112
Q ss_pred EEEEeCCCCceEEEEecCCCeEEEEEccCCC--ccceeecc---------CcccCeEEEEEcCCCCEEEEEcC-------
Q psy6859 141 CIHYLGDAIPTAAVSDQDSSHVHIYDCKGNG--TPLHVLDR---------LHTKPVVLIKFNPIYQVVVSVDK------- 202 (261)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~~------- 202 (261)
...+.+++...++++ ..+.+.+.|+. .. +.+..++. ........+.++|+++.|+++..
T Consensus 217 ~~~~~~~~~~~~~~~--~~~~v~vid~~-~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~ 293 (373)
T 2mad_H 217 QPAQANKSGRIVWPV--YSGKILQADIS-AAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKL 293 (373)
T ss_pred cceeEecCCEEEEEc--CCceEEEEecc-CCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccc
Confidence 344556554433333 57889999986 33 22223210 01222445789999987766543
Q ss_pred ---CCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCc-eEEEee
Q psy6859 203 ---AGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGN-KFVTIS 258 (261)
Q Consensus 203 ---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~ 258 (261)
.+.|.++|+. +.+.+..+.. .....+++|+|||+ +|+++.
T Consensus 294 ~~~~~~V~VID~~---------------t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~ 337 (373)
T 2mad_H 294 HAAAKEVTSVTGL---------------VGQTSSQISL-GHDVDAISVAQDGGPDLYALS 337 (373)
T ss_pred cCCCCeEEEEECC---------------CCEEEEEEEC-CCCcCeEEECCCCCeEEEEEc
Confidence 3579999984 3566666643 33678999999999 677665
No 205
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.59 E-value=9.1e-13 Score=98.43 Aligned_cols=192 Identities=10% Similarity=0.000 Sum_probs=128.0
Q ss_pred EEeeccccceeEEEEeeCCC-EEEEEeCCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEE
Q psy6859 40 KHFRSHLGVIHSICTNYNGT-LLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHI 118 (261)
Q Consensus 40 ~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i 118 (261)
..+..+.....+++|+|+++ +++++..++.|..||..++ ...+..+......+.+.+++..+++. ..++.|.+
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~----~~~~~i~~ 94 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACS----HGLRRLER 94 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEE----TTTTEEEE
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEe----cCCCeEEE
Confidence 34444556678999999998 7778888999999999876 55555555556667777777654443 56789999
Q ss_pred EEcCCCceeeEEeecCC--cceEEEEEEeCCCCceEEEE----ec-------------CCCeEEEEEccCCCccceeecc
Q psy6859 119 YDCKGNDMINMIKLDFT--PLTVECIHYLGDAIPTAAVS----DQ-------------DSSHVHIYDCKGNGTPLHVLDR 179 (261)
Q Consensus 119 ~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~-------------~d~~i~i~d~~~~~~~~~~~~~ 179 (261)
||..+++.......... ...+..++++|++.. +++ |+ ..+.|..++.. ++ +..+.
T Consensus 95 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l--~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~-~~~~~- 168 (296)
T 3e5z_A 95 QREPGGEWESIADSFEGKKLNSPNDVCLAPDGSL--WFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GT-LSAPI- 168 (296)
T ss_dssp ECSTTCCEEEEECEETTEECCCCCCEEECTTSCE--EEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SC-EEEEE-
T ss_pred EcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCE--EEECCccccccccccccccccCCCcEEEEECCC--CC-EEEee-
Confidence 99988765443322111 123567889999963 555 32 12345555542 33 33443
Q ss_pred CcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccc---eeecCCCccceeeeeECCCCceEEE
Q psy6859 180 LHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTD---LFEFAKNKTYPSGLSFSPDGNKFVT 256 (261)
Q Consensus 180 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~s 256 (261)
.+......++|+|+++.|++.+.++.|.+|++... ++. ...+..+...+.+++++++|+++++
T Consensus 169 ~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~--------------g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~ 234 (296)
T 3e5z_A 169 RDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNAR--------------GETEYQGVHFTVEPGKTDGLRVDAGGLIWAS 234 (296)
T ss_dssp CCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSS--------------SCEEEEEEEECCSSSCCCSEEEBTTSCEEEE
T ss_pred cCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCC--------------CcCcCCCeEeeCCCCCCCeEEECCCCCEEEE
Confidence 56667899999999998887888899999998521 111 1112234556778999999987666
Q ss_pred e
Q psy6859 257 I 257 (261)
Q Consensus 257 ~ 257 (261)
.
T Consensus 235 ~ 235 (296)
T 3e5z_A 235 A 235 (296)
T ss_dssp E
T ss_pred c
Confidence 5
No 206
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.59 E-value=1.5e-12 Score=108.32 Aligned_cols=228 Identities=9% Similarity=0.004 Sum_probs=141.1
Q ss_pred CCCCeEEEEEcC-CCeEEE-----ecCCCeEEEEeccCCceeeeE-EeeccccceeEEEEeeCCCEEEEEeCCC------
Q psy6859 2 HRSPITHVVVTK-TDFVIT-----ASNDGHIKFWKKQEEGIEFVK-HFRSHLGVIHSICTNYNGTLLCTVASDK------ 68 (261)
Q Consensus 2 H~~~v~~~~~~~-~~~l~s-----~~~d~~i~iw~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~~~dg------ 68 (261)
|...+..++||| +++||- |+....|++||++++. .+. .+. ......++|+ |++.|+.++.+.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~--~~~~~~~--~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~ 201 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQ--PLETPLK--DVKFSGISWL-GNEGFFYSSYDKPDGSEL 201 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCS--EEEEEEE--EEESCCCEEE-TTTEEEEEESSCCC----
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCC--CCccccC--CceeccEEEe-CCCEEEEEEecCcccccc
Confidence 555788999999 888773 4444689999999873 322 222 1123678999 999999888774
Q ss_pred -------cEEEEEccccce--eeeeeccC---cceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCc-eeeEEeecCC
Q psy6859 69 -------AMKVFDVINFDM--INMIKLDF---TPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGND-MINMIKLDFT 135 (261)
Q Consensus 69 -------~v~~wd~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~-~~~~~~~~~~ 135 (261)
.|++|++.+++. ...+.... .......++++++.++.....+.....|.++|+.++. ....+.....
T Consensus 202 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~ 281 (693)
T 3iuj_A 202 SARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLD 281 (693)
T ss_dssp ---CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSS
T ss_pred cccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCC
Confidence 399999887643 22222222 2234566788888776654444455799999998763 3344443322
Q ss_pred cceEEEEEEeCCCCceEEEEecC--CCeEEEEEccCCCcc--ceeeccCcccCeEEEEEcCCCCEEEEEc-CCC--eEEE
Q psy6859 136 PLTVECIHYLGDAIPTAAVSDQD--SSHVHIYDCKGNGTP--LHVLDRLHTKPVVLIKFNPIYQVVVSVD-KAG--ILEY 208 (261)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg--~i~i 208 (261)
..... +++++..+++.+... .+.|..+|+. ++.. ...+. .+...+. .|+++++.|+... .++ .|++
T Consensus 282 --~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~-~~~~~~~~~l~-~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~ 354 (693)
T 3iuj_A 282 --ADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAA-NPGPAHWRDLI-PERQQVL--TVHSGSGYLFAEYMVDATARVEQ 354 (693)
T ss_dssp --SCEEE-EEEETTEEEEEECTTCTTCEEEEEETT-SCCGGGCEEEE-CCCSSCE--EEEEETTEEEEEEEETTEEEEEE
T ss_pred --ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCC-CCCccccEEEe-cCCCCEE--EEEEECCEEEEEEEECCeeEEEE
Confidence 22222 556665544444322 3679999997 5443 34554 5555554 8999999876655 444 6888
Q ss_pred eecccccccCCeeeeeecccccceeecC-CCccceeeeeECCCCceEEEe
Q psy6859 209 WSGYKQEFKFPKCVHFESKLDTDLFEFA-KNKTYPSGLSFSPDGNKFVTI 257 (261)
Q Consensus 209 wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~ 257 (261)
||+.. .....+. .....+..+.++|+++.|+..
T Consensus 355 ~d~~g----------------~~~~~l~~p~~~~~~~~~~~~d~~~l~~~ 388 (693)
T 3iuj_A 355 FDYEG----------------KRVREVALPGLGSVSGFNGKHDDPALYFG 388 (693)
T ss_dssp ECTTS----------------CEEEEECCSSSSEEEECCCCTTCSCEEEE
T ss_pred EECCC----------------CeeEEeecCCCceEEeeecCCCCCEEEEE
Confidence 88753 2222222 234556777788887766544
No 207
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.55 E-value=1.1e-11 Score=95.47 Aligned_cols=229 Identities=10% Similarity=0.075 Sum_probs=147.1
Q ss_pred CeEEEecCCCeEEEEeccCC--ceeeeEEee-------ccccceeEEEEeeCCCEEEEEeCC------CcEEEEEccccc
Q psy6859 15 DFVITASNDGHIKFWKKQEE--GIEFVKHFR-------SHLGVIHSICTNYNGTLLCTVASD------KAMKVFDVINFD 79 (261)
Q Consensus 15 ~~l~s~~~d~~i~iw~~~~~--~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~s~~~d------g~v~~wd~~~~~ 79 (261)
.+++++..++.|.++|+.+. ..+..++++ .....-..+...|++ .++++..+ +.+.++|..+++
T Consensus 97 ~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~ 175 (462)
T 2ece_A 97 FLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFE 175 (462)
T ss_dssp EEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCC
T ss_pred EEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCe
Confidence 35667888899999998643 235555552 011234567788999 77776665 789999999999
Q ss_pred eeeeeeccCcc---eeEEEEeecCCceeeeeee----------c-----CCCCeEEEEEcCCCceeeEEeecCCcceEEE
Q psy6859 80 MINMIKLDFTP---LTVECIHYLGDAIPTAAVS----------D-----QDSSRVHIYDCKGNDMINMIKLDFTPLTVEC 141 (261)
Q Consensus 80 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~s----------~-----~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 141 (261)
.+..+.....+ ..-.+++++++.+++.-+. . ....+|.+||+.+++.+..+...........
T Consensus 176 v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~ 255 (462)
T 2ece_A 176 PLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALE 255 (462)
T ss_dssp EEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEE
T ss_pred EEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccce
Confidence 99988754333 2236777877755543100 0 1378999999999888888876433334456
Q ss_pred EEE--eCCCCceEEEEec-----CCCeEEEEEccCCCc--cceee--cc----C-----------cccCeEEEEEcCCCC
Q psy6859 142 IHY--LGDAIPTAAVSDQ-----DSSHVHIYDCKGNGT--PLHVL--DR----L-----------HTKPVVLIKFNPIYQ 195 (261)
Q Consensus 142 ~~~--~~~~~~~~~~~~~-----~d~~i~i~d~~~~~~--~~~~~--~~----~-----------~~~~v~~~~~~~~~~ 195 (261)
+.| +|++.+. ++++- .+++|.+|... .++ ..+.+ .. . -......|.++|||+
T Consensus 256 i~f~~~Pdg~~a-YV~~e~~~~~Lss~V~v~~~d-~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGr 333 (462)
T 2ece_A 256 LRPLHDPTKLMG-FINMVVSLKDLSSSIWLWFYE-DGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDK 333 (462)
T ss_dssp EEECSSTTCCEE-EEEEEEETTTCCEEEEEEEEE-TTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSC
T ss_pred eEeeECCCCCEE-EEEEeeeccCCCceEEEEEec-CCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCC
Confidence 656 9999864 44444 57788877665 331 11111 10 0 024578899999999
Q ss_pred EEEEEc-CCCeEEEeecccccccCCeeeeeecccccceeecCC--------C------ccceeeeeECCCCceEEEee
Q psy6859 196 VVVSVD-KAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK--------N------KTYPSGLSFSPDGNKFVTIS 258 (261)
Q Consensus 196 ~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~------~~~v~~~~~s~~~~~l~s~~ 258 (261)
+|+++. ..+.|.+||+... ...+.+..+.. | ......++++|||++|+++.
T Consensus 334 fLYVSnrg~d~VavfdV~d~------------~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 334 FLYLSLWGIGEVRQYDISNP------------FKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EEEEEETTTTEEEEEECSST------------TSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEEEeCCCCEEEEEEecCC------------CCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 886655 6789999998532 11122221111 0 12468899999999998876
No 208
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.54 E-value=5.1e-12 Score=96.42 Aligned_cols=236 Identities=9% Similarity=0.058 Sum_probs=143.6
Q ss_pred CCeEEEEEcC-CCeEEEec--CCCeEEEEeccCCceeeeEEe-------eccccceeEEEEeeCCCEEEEEeC-----CC
Q psy6859 4 SPITHVVVTK-TDFVITAS--NDGHIKFWKKQEEGIEFVKHF-------RSHLGVIHSICTNYNGTLLCTVAS-----DK 68 (261)
Q Consensus 4 ~~v~~~~~~~-~~~l~s~~--~d~~i~iw~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~s~~~-----dg 68 (261)
.....|+++| ++++++.. .++.++||.+.++ +.. .+ ..|-..+..++++++++++++-.. ++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g--~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQD--GLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETT--EEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCC--Cee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCC
Confidence 3578899999 88877753 2343667766533 222 12 234467899999999876665433 57
Q ss_pred cEEEEEccccceeeeeeccCc------ceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeec--CC-----
Q psy6859 69 AMKVFDVINFDMINMIKLDFT------PLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLD--FT----- 135 (261)
Q Consensus 69 ~v~~wd~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~--~~----- 135 (261)
.|.+||+.+++.+..+..+.. ....+.+.+++..++....+...++.|.+||+.+++....+..+ ..
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~ 173 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDID 173 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCC
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccc
Confidence 899999998987777664321 12445555544444333111115789999999887655544210 00
Q ss_pred --------------------cceEEEEEEeCCCCceEEEEecCCCeEEEEEccC--CC-----ccceeec-cCcccCeEE
Q psy6859 136 --------------------PLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKG--NG-----TPLHVLD-RLHTKPVVL 187 (261)
Q Consensus 136 --------------------~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~--~~-----~~~~~~~-~~~~~~v~~ 187 (261)
...+..++++|++..+ +++......+..++... .+ +....+. .++......
T Consensus 174 ~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~l-y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdg 252 (343)
T 2qe8_A 174 LVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWL-YLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDG 252 (343)
T ss_dssp CEETTEECBEECTTSCEECCCCCEEEEEECTTSCEE-EEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSC
T ss_pred eeECCEEEEeccCCCceeceecccceeEeccCCCEE-EEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCce
Confidence 0135789999999752 34434344666665420 11 0111111 023345677
Q ss_pred EEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecC-CCccceeeeeECCCCceEEEee
Q psy6859 188 IKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFA-KNKTYPSGLSFSPDGNKFVTIS 258 (261)
Q Consensus 188 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~ 258 (261)
++++++|.++++...++.|.+||..+ ++...... .+...+.+++|.++|+++++.+
T Consensus 253 ia~d~~G~l~va~~~~~~V~~~d~~~---------------G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 253 ISIDKDHNIYVGDLAHSAIGVITSAD---------------RAYKLLVTDEKLSWTDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp EEECTTCCEEEEEGGGTEEEEEETTT---------------TEEEEEEECGGGSCEEEEEECTTSCEEEEEC
T ss_pred EEECCCCCEEEEccCCCeEEEEECCC---------------CCEEEEEECCceecCCeeEECCCCcEEEEeC
Confidence 99999999888888899999999732 22111111 1245688999999998877765
No 209
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.53 E-value=1.4e-11 Score=90.97 Aligned_cols=179 Identities=10% Similarity=0.023 Sum_probs=133.1
Q ss_pred CeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeecc-ccceeEEEEeeCCCEEEEEeC-CCcEEEEEcccccee
Q psy6859 5 PITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSH-LGVIHSICTNYNGTLLCTVAS-DKAMKVFDVINFDMI 81 (261)
Q Consensus 5 ~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~-dg~v~~wd~~~~~~~ 81 (261)
.+.+++++| +++++ +.++.|..||. ++ +.+..+..+ ...+.++.+.++|+++++.+. ++.+..+|. +++.+
T Consensus 38 ~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G--~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l 111 (276)
T 3no2_A 38 ECNSVAATKAGEILF--SYSKGAKMITR-DG--RELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVL 111 (276)
T ss_dssp CCCEEEECTTSCEEE--ECBSEEEEECT-TS--CEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEE
T ss_pred CCcCeEECCCCCEEE--eCCCCEEEECC-CC--CEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEE
Confidence 578899999 88777 45788999998 55 677777754 346888999999999999887 777887885 78877
Q ss_pred eeeeccCc------ceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEE
Q psy6859 82 NMIKLDFT------PLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVS 155 (261)
Q Consensus 82 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (261)
..+..... ........++++.+++. ..++.|..||.+ ++.+..+..... ...+...+++.. +++
T Consensus 112 ~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~----~~~~~v~~~d~~-G~~~w~~~~~~~---~~~~~~~~~g~~--~v~ 181 (276)
T 3no2_A 112 SKTEFETGIERPHAQFRQINKNKKGNYLVPL----FATSEVREIAPN-GQLLNSVKLSGT---PFSSAFLDNGDC--LVA 181 (276)
T ss_dssp EEEEECCSCSSGGGSCSCCEECTTSCEEEEE----TTTTEEEEECTT-SCEEEEEECSSC---CCEEEECTTSCE--EEE
T ss_pred EEEeccCCCCcccccccCceECCCCCEEEEe----cCCCEEEEECCC-CCEEEEEECCCC---ccceeEcCCCCE--EEE
Confidence 77653211 22233456677776665 789999999998 888888876433 345677788864 677
Q ss_pred ecCCCeEEEEEccCCCccceeeccCcc------cCeEEEEEcCCCCEEEEEc
Q psy6859 156 DQDSSHVHIYDCKGNGTPLHVLDRLHT------KPVVLIKFNPIYQVVVSVD 201 (261)
Q Consensus 156 ~~~d~~i~i~d~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~ 201 (261)
+..++.|..+|.. +++.+.++. ... ..+..+...++|.++++..
T Consensus 182 ~~~~~~v~~~d~~-tG~~~w~~~-~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 182 CGDAHCFVQLNLE-SNRIVRRVN-ANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp CBTTSEEEEECTT-TCCEEEEEE-GGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred eCCCCeEEEEeCc-CCcEEEEec-CCCCCCccccccccceEcCCCCEEEEec
Confidence 7777899999988 899988885 222 2378889999999887763
No 210
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.51 E-value=7.5e-12 Score=95.57 Aligned_cols=221 Identities=10% Similarity=0.026 Sum_probs=139.9
Q ss_pred EEEEcC-CCeEEEec----------CCCeEEEEeccCCceeeeEEeeccc-------cceeEEEEeeCCCEEEEEeC--C
Q psy6859 8 HVVVTK-TDFVITAS----------NDGHIKFWKKQEEGIEFVKHFRSHL-------GVIHSICTNYNGTLLCTVAS--D 67 (261)
Q Consensus 8 ~~~~~~-~~~l~s~~----------~d~~i~iw~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~s~~~--d 67 (261)
.++++| +++++++. .++.|.+||..+. +.+..+.-.. .....+.|+|||++++.+.. +
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~--~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~ 159 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL--LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA 159 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC--CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSS
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC--eEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCC
Confidence 389999 87776654 3678999999987 6666554211 23567999999999888864 6
Q ss_pred CcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCC-CceeeEEeecCCcc--eE-EEEE
Q psy6859 68 KAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKG-NDMINMIKLDFTPL--TV-ECIH 143 (261)
Q Consensus 68 g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~-~~~~~~~~~~~~~~--~~-~~~~ 143 (261)
+.|.++|+.+++.+.++..... ........+.+++. +.||.+.+.++.+ ++..........+. .+ ....
T Consensus 160 ~~VsVID~~t~~vv~tI~v~g~---~~~~P~g~~~~~~~----~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~ 232 (386)
T 3sjl_D 160 PAVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFFMH----CRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPA 232 (386)
T ss_dssp CEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEE----ETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCE
T ss_pred CeEEEEECCCCcEEEEEECCCc---ceeecCCCceeEEE----CCCCCEEEEECCCCCeEEEeecceeccccccccccce
Confidence 8999999999999998875432 22222233444444 6799999999976 55432211111111 11 1234
Q ss_pred Ee-CCCCceEEEEecCCCeEEEEEccCCCc--cceeec---------cCcccCeEEEEEcCCCCEEEEEcC---------
Q psy6859 144 YL-GDAIPTAAVSDQDSSHVHIYDCKGNGT--PLHVLD---------RLHTKPVVLIKFNPIYQVVVSVDK--------- 202 (261)
Q Consensus 144 ~~-~~~~~~~~~~~~~d~~i~i~d~~~~~~--~~~~~~---------~~~~~~v~~~~~~~~~~~l~~~~~--------- 202 (261)
|. +++.. ++ .+.+|.+++.|+. ... .+..+. .-.......++++|+++.++....
T Consensus 233 ~~~~dG~~--~~-vs~~g~V~v~d~~-~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~ 308 (386)
T 3sjl_D 233 YSQKAGRL--VW-PTYTGKIHQIDLS-SGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKT 308 (386)
T ss_dssp EETTTTEE--EE-EBTTSEEEEEECT-TSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTS
T ss_pred eEcCCCcE--EE-EeCCCEEEEEECC-CCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCC
Confidence 54 56642 23 3447999999996 432 232221 001223345778999987766542
Q ss_pred -CCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCc-eEEEe
Q psy6859 203 -AGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGN-KFVTI 257 (261)
Q Consensus 203 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~ 257 (261)
.+.|.++|+. +.+.+..+.. ...+++++++||++ +|+++
T Consensus 309 ~~~~V~viD~~---------------t~kv~~~i~v-g~~~~~lavs~D~~~~ly~t 349 (386)
T 3sjl_D 309 ASRFVVVLDAK---------------TGERLAKFEM-GHEIDSINVSQDEKPLLYAL 349 (386)
T ss_dssp CEEEEEEEETT---------------TCCEEEEEEE-EEEECEEEECSSSSCEEEEE
T ss_pred CCCEEEEEECC---------------CCeEEEEEEC-CCCcceEEECCCCCeEEEEE
Confidence 2468888884 4666666553 34788999999997 66654
No 211
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.51 E-value=3.2e-11 Score=90.50 Aligned_cols=226 Identities=9% Similarity=-0.033 Sum_probs=139.5
Q ss_pred CeEEEEEcC-CC-eEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceee
Q psy6859 5 PITHVVVTK-TD-FVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMIN 82 (261)
Q Consensus 5 ~v~~~~~~~-~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~ 82 (261)
......|+| ++ ++++...++.|..|+.. +. ...+..+...+..++++++|+++++...++.|.+|+.. ++...
T Consensus 46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~---~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~ 120 (305)
T 3dr2_A 46 WSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT---VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHL 120 (305)
T ss_dssp SEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC---EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred CccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC---EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEE
Confidence 456788999 76 67888888999999874 32 23444455678999999999877665566789999975 54322
Q ss_pred eeec-cC---cceeEEEEeecCCceeeeeeecC-------------CCCeEEEEEcCCCceeeEEeecCCcceEEEEEEe
Q psy6859 83 MIKL-DF---TPLTVECIHYLGDAIPTAAVSDQ-------------DSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYL 145 (261)
Q Consensus 83 ~~~~-~~---~~~~~~~~~~~~~~~~~~~~s~~-------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (261)
.... .. .....+.+.+++...++-...|. ..+.|..+|..+++..... . ......++|+
T Consensus 121 ~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~---~~~p~gl~~s 196 (305)
T 3dr2_A 121 LVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-D---LDHPNGLAFS 196 (305)
T ss_dssp EECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-E---ESSEEEEEEC
T ss_pred EEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-c---CCCCcceEEc
Confidence 2111 11 11234566666654432100011 1356778887666544332 1 1245678999
Q ss_pred CCCCceEEEEecC-----CCeEEEEEccCCCcc--ceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccC
Q psy6859 146 GDAIPTAAVSDQD-----SSHVHIYDCKGNGTP--LHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKF 218 (261)
Q Consensus 146 ~~~~~~~~~~~~~-----d~~i~i~d~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 218 (261)
|++..+ +++.+. .+.|..||+. .... ...+..........++++++|++ .++..++ |.+|+..
T Consensus 197 pdg~~l-yv~~~~~~~~~~~~i~~~~~~-~~~l~~~~~~~~~~~~~pdgi~~d~~G~l-wv~~~~g-v~~~~~~------ 266 (305)
T 3dr2_A 197 PDEQTL-YVSQTPEQGHGSVEITAFAWR-DGALHDRRHFASVPDGLPDGFCVDRGGWL-WSSSGTG-VCVFDSD------ 266 (305)
T ss_dssp TTSSEE-EEEECCC---CCCEEEEEEEE-TTEEEEEEEEECCSSSCCCSEEECTTSCE-EECCSSE-EEEECTT------
T ss_pred CCCCEE-EEEecCCcCCCCCEEEEEEec-CCCccCCeEEEECCCCCCCeEEECCCCCE-EEecCCc-EEEECCC------
Confidence 999753 344333 2789999987 4331 11111112344567899999994 4444454 9999863
Q ss_pred CeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecC
Q psy6859 219 PKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMD 260 (261)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~D 260 (261)
++.+..+..+. .+.+++|+|+++.|..++.+
T Consensus 267 ----------g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~ 297 (305)
T 3dr2_A 267 ----------GQLLGHIPTPG-TASNCTFDQAQQRLFITGGP 297 (305)
T ss_dssp ----------SCEEEEEECSS-CCCEEEECTTSCEEEEEETT
T ss_pred ----------CCEEEEEECCC-ceeEEEEeCCCCEEEEEcCC
Confidence 34444444433 58899999999888877654
No 212
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.51 E-value=1.5e-14 Score=111.34 Aligned_cols=180 Identities=7% Similarity=0.016 Sum_probs=100.6
Q ss_pred CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcc-ee
Q psy6859 14 TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTP-LT 92 (261)
Q Consensus 14 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~-~~ 92 (261)
+..+++++.|+.|..||..++ +.+..+.. +.+.+..+..+++.+++++.|+.|+.||..+++.+..+..+... ..
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG--~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTG--SIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ 84 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTC--CEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred CCEEEEEcCCCEEEEEECCCC--CEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence 678999999999999999987 66666664 45666666677878888889999999999988876655432110 00
Q ss_pred EEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCc
Q psy6859 93 VECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGT 172 (261)
Q Consensus 93 ~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~ 172 (261)
.......+..++. ++.++.+..||.++++.+..+.... ...++|++.. ++.++.++.|+.||.+ +++
T Consensus 85 ~sp~~~~~~~v~~----g~~dg~v~a~D~~tG~~~w~~~~~~------~~~~~p~~~~--v~~~~~dg~v~a~d~~-tG~ 151 (369)
T 2hz6_A 85 ASPCRSSDGILYM----GKKQDIWYVIDLLTGEKQQTLSSAF------ADSLSPSTSL--LYLGRTEYTITMYDTK-TRE 151 (369)
T ss_dssp TCSCC-----CCC----CEEEEEEEEECCC------------------------------EEEEEEEEEEECCCSS-SSS
T ss_pred cCceEecCCEEEE----EeCCCEEEEEECCCCcEEEEecCCC------cccccccCCE--EEEEecCCEEEEEECC-CCC
Confidence 0000012333433 3678999999999998877665432 1233455443 6667778999999998 888
Q ss_pred cceeeccCcccCeEEEEEcCCC---CEEEEEcCCCeEEEeeccc
Q psy6859 173 PLHVLDRLHTKPVVLIKFNPIY---QVVVSVDKAGILEYWSGYK 213 (261)
Q Consensus 173 ~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~ 213 (261)
.+..+. ... .....++++. ..+++++.||.|..||..+
T Consensus 152 ~~W~~~-~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~t 192 (369)
T 2hz6_A 152 LRWNAT-YFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSES 192 (369)
T ss_dssp CCCEEE-EEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTT
T ss_pred EEEeEe-ccc--ccCccccCCccccceEEEECCCCEEEEEECCC
Confidence 877764 221 1223344432 4577788899999999865
No 213
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.49 E-value=1.1e-11 Score=104.06 Aligned_cols=198 Identities=12% Similarity=0.030 Sum_probs=118.6
Q ss_pred cccceeEEEEeeCCCEEEEEeCC-----CcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecC--------
Q psy6859 45 HLGVIHSICTNYNGTLLCTVASD-----KAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ-------- 111 (261)
Q Consensus 45 ~~~~v~~~~~~~~~~~l~s~~~d-----g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-------- 111 (261)
|...+..++|+|||++|+.++.+ ..|++||+.+++.+... ..........++++ +.++.......
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 33468899999999999887654 36999999998875531 11111234567777 76665521111
Q ss_pred --CCCeEEEEEcCCCce--eeEEeecCCcceEEEEEEeCCCCceEEEEec---CCCeEEEEEccCCC--ccceeeccCcc
Q psy6859 112 --DSSRVHIYDCKGNDM--INMIKLDFTPLTVECIHYLGDAIPTAAVSDQ---DSSHVHIYDCKGNG--TPLHVLDRLHT 182 (261)
Q Consensus 112 --~d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~i~i~d~~~~~--~~~~~~~~~~~ 182 (261)
....|.+|++.++.. ...+....++..+..+.++|++.++++.+.. ....|++||+. ++ +....+. .+.
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~-~~~~~~~~~l~-~~~ 316 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVT-NGKIGPVTALI-PDL 316 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEE-TTEECCCEEEE-CSS
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECC-CCCCcccEEec-CCC
Confidence 033589999987753 2233333333457899999999875444432 24589999997 55 3145554 444
Q ss_pred cCeEEEEEcCCCCEEEEEcC----CCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEee
Q psy6859 183 KPVVLIKFNPIYQVVVSVDK----AGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTIS 258 (261)
Q Consensus 183 ~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 258 (261)
..+... ++|+|+.|+..+. ++.|.+||+.+.. ......+..+...+..+.|+ ++.++++..
T Consensus 317 ~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-------------~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~ 381 (741)
T 1yr2_A 317 KAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGST-------------PRFDTVVPESKDNLESVGIA-GNRLFASYI 381 (741)
T ss_dssp SSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSS-------------CEEEEEECCCSSEEEEEEEE-BTEEEEEEE
T ss_pred CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCc-------------cccEEEecCCCCeEEEEEEE-CCEEEEEEE
Confidence 445554 3488988776654 3458999985410 11222223344456666776 455666665
Q ss_pred cCC
Q psy6859 259 MDR 261 (261)
Q Consensus 259 ~Dg 261 (261)
.|+
T Consensus 382 ~dg 384 (741)
T 1yr2_A 382 HDA 384 (741)
T ss_dssp ETT
T ss_pred ECC
Confidence 553
No 214
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.48 E-value=7.5e-11 Score=88.62 Aligned_cols=199 Identities=13% Similarity=0.102 Sum_probs=128.4
Q ss_pred CCCCeEEEEEcCC-CeEEEecCCCeEEEEeccCCceeeeEE-ee---c-cccceeEEEEeeCCCEEEEEeCC--------
Q psy6859 2 HRSPITHVVVTKT-DFVITASNDGHIKFWKKQEEGIEFVKH-FR---S-HLGVIHSICTNYNGTLLCTVASD-------- 67 (261)
Q Consensus 2 H~~~v~~~~~~~~-~~l~s~~~d~~i~iw~~~~~~~~~~~~-~~---~-~~~~v~~~~~~~~~~~l~s~~~d-------- 67 (261)
+...+.++++++. ..|..+...+.|.+|+.+ + +.... .. . ....+.+++++++++++++...+
T Consensus 69 ~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g--~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~ 145 (314)
T 1pjx_A 69 YGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-G--TFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYT 145 (314)
T ss_dssp EECCEEEEEECSSSSEEEEEETTTEEEEEETT-S--CEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCC
T ss_pred CCCCCceEEEecCCCcEEEEECCCCEEEEeCC-C--CEEEEEeccCCCccccCCcCEEECCCCCEEEEecCccccccccc
Confidence 3466889999984 655555555578899987 4 32222 11 1 12357899999999888877655
Q ss_pred -------CcEEEEEccccceeeeeeccCcceeEEEEe----ecCCceeeeeeecCCCCeEEEEEcC-CCceee--EE-ee
Q psy6859 68 -------KAMKVFDVINFDMINMIKLDFTPLTVECIH----YLGDAIPTAAVSDQDSSRVHIYDCK-GNDMIN--MI-KL 132 (261)
Q Consensus 68 -------g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~s~~~d~~i~i~d~~-~~~~~~--~~-~~ 132 (261)
+.|..|+.. ++.......... ...+.+. ++++.++.. ...++.|.+||+. +++... .+ ..
T Consensus 146 ~~~~~~~~~l~~~~~~-g~~~~~~~~~~~-~~~i~~~~~~d~dg~~l~v~---~~~~~~i~~~~~~~~g~~~~~~~~~~~ 220 (314)
T 1pjx_A 146 RSMQEKFGSIYCFTTD-GQMIQVDTAFQF-PNGIAVRHMNDGRPYQLIVA---ETPTKKLWSYDIKGPAKIENKKVWGHI 220 (314)
T ss_dssp BTTSSSCEEEEEECTT-SCEEEEEEEESS-EEEEEEEECTTSCEEEEEEE---ETTTTEEEEEEEEETTEEEEEEEEEEC
T ss_pred ccccCCCCeEEEECCC-CCEEEeccCCCC-cceEEEecccCCCCCEEEEE---ECCCCeEEEEECCCCCccccceEEEEC
Confidence 467777764 544332221112 2345566 655444333 2567899999986 343211 11 11
Q ss_pred cCCc-ceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEE-EEEcCCCeEEEee
Q psy6859 133 DFTP-LTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVV-VSVDKAGILEYWS 210 (261)
Q Consensus 133 ~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd 210 (261)
.... .....+++++++. ++++...++.|.+||.. +++.+..+. .+...+.+++|+|+++.| ++...++.|..|+
T Consensus 221 ~~~~~~~p~~i~~d~~G~--l~v~~~~~~~i~~~d~~-~g~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~ 296 (314)
T 1pjx_A 221 PGTHEGGADGMDFDEDNN--LLVANWGSSHIEVFGPD-GGQPKMRIR-CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFE 296 (314)
T ss_dssp CCCSSCEEEEEEEBTTCC--EEEEEETTTEEEEECTT-CBSCSEEEE-CSSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCCCCCCceEECCCCC--EEEEEcCCCEEEEEcCC-CCcEeEEEe-CCCCCceeEEECCCCCEEEEEeCCCCeEEEEe
Confidence 1121 4567899999986 35665568899999987 677777775 566789999999999955 5555678899999
Q ss_pred cc
Q psy6859 211 GY 212 (261)
Q Consensus 211 ~~ 212 (261)
+.
T Consensus 297 ~~ 298 (314)
T 1pjx_A 297 WQ 298 (314)
T ss_dssp CS
T ss_pred CC
Confidence 75
No 215
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.45 E-value=2.9e-11 Score=93.86 Aligned_cols=200 Identities=11% Similarity=0.046 Sum_probs=123.4
Q ss_pred EEEEcC-CCeEEEec----------CCCeEEEEeccCCceeeeEEeecc-------ccceeEEEEeeCCCEEEEEeC--C
Q psy6859 8 HVVVTK-TDFVITAS----------NDGHIKFWKKQEEGIEFVKHFRSH-------LGVIHSICTNYNGTLLCTVAS--D 67 (261)
Q Consensus 8 ~~~~~~-~~~l~s~~----------~d~~i~iw~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~s~~~--d 67 (261)
.++++| +++++.+. .++.|.++|..+. +.+..+.-. ......+.++||+++++.+.. +
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~--~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~ 199 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF--LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPA 199 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC--CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSS
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC--cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCC
Confidence 789999 77776665 4678999999887 555555421 123467899999999998874 5
Q ss_pred CcEEEEEccccceeeeeeccCcc-------eeEEEEeecCCceeee----------------------------------
Q psy6859 68 KAMKVFDVINFDMINMIKLDFTP-------LTVECIHYLGDAIPTA---------------------------------- 106 (261)
Q Consensus 68 g~v~~wd~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~---------------------------------- 106 (261)
+.|.+.|+.+++.+..+...... .....+.+++..++..
T Consensus 200 ~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~ 279 (426)
T 3c75_H 200 PAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRL 279 (426)
T ss_dssp CEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEE
T ss_pred CeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEE
Confidence 78999999999988887754320 0011122222211110
Q ss_pred eeecCCCCeEEEEEcCCCcee--eEEeec--------CCcceEEEEEEeCCCCceEEEEec--------CCCeEEEEEcc
Q psy6859 107 AVSDQDSSRVHIYDCKGNDMI--NMIKLD--------FTPLTVECIHYLGDAIPTAAVSDQ--------DSSHVHIYDCK 168 (261)
Q Consensus 107 ~~s~~~d~~i~i~d~~~~~~~--~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~--------~d~~i~i~d~~ 168 (261)
.+. +..+.+.+.|+...... ..+... ..+.....+.++|++..+++.... ..+.|.++|..
T Consensus 280 ~~~-s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~ 358 (426)
T 3c75_H 280 VWP-TYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAE 358 (426)
T ss_dssp EEE-BTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETT
T ss_pred EEE-eCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECC
Confidence 000 11233444444322211 111100 001111126788887764333221 13579999999
Q ss_pred CCCccceeeccCcccCeEEEEEcCCCC-EEEEEc-CCCeEEEeeccc
Q psy6859 169 GNGTPLHVLDRLHTKPVVLIKFNPIYQ-VVVSVD-KAGILEYWSGYK 213 (261)
Q Consensus 169 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~iwd~~~ 213 (261)
+.+.+.++. -......+.|+|||+ ++++.. .++.|.++|+.+
T Consensus 359 -T~kvv~~I~--vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t 402 (426)
T 3c75_H 359 -TGERINKIE--LGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAAT 402 (426)
T ss_dssp -TCCEEEEEE--EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTT
T ss_pred -CCeEEEEEE--CCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCC
Confidence 899999985 334588999999999 888777 599999999954
No 216
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.41 E-value=8.2e-10 Score=80.12 Aligned_cols=193 Identities=13% Similarity=0.053 Sum_probs=130.2
Q ss_pred eeeEEeecccc--ceeEEEEeeCCCEEEEEeC--CCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCC
Q psy6859 37 EFVKHFRSHLG--VIHSICTNYNGTLLCTVAS--DKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD 112 (261)
Q Consensus 37 ~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~--dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 112 (261)
+.+.++. |.. ....+.|++++.++++.+. ++.|.++|+.+++.+..+.....+.. ..+...++.++.+ .-.
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fg-eGi~~~g~~lyv~---t~~ 84 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFG-EGLTLLNEKLYQV---VWL 84 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCE-EEEEEETTEEEEE---ETT
T ss_pred eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcce-EEEEEeCCEEEEE---Eec
Confidence 4555564 443 3579999998755555543 57999999999999998876544322 2333446665554 357
Q ss_pred CCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcc-----cCeEE
Q psy6859 113 SSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHT-----KPVVL 187 (261)
Q Consensus 113 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-----~~v~~ 187 (261)
++.+.++|..+.+.+..+... .+. .+..++++..+ +++. .++.|.++|.. +.+.+..+. ... ..++.
T Consensus 85 ~~~v~viD~~t~~v~~~i~~g-~~~---g~glt~Dg~~l-~vs~-gs~~l~viD~~-t~~v~~~I~-Vg~~~~p~~~~ne 156 (266)
T 2iwa_A 85 KNIGFIYDRRTLSNIKNFTHQ-MKD---GWGLATDGKIL-YGSD-GTSILYEIDPH-TFKLIKKHN-VKYNGHRVIRLNE 156 (266)
T ss_dssp CSEEEEEETTTTEEEEEEECC-SSS---CCEEEECSSSE-EEEC-SSSEEEEECTT-TCCEEEEEE-CEETTEECCCEEE
T ss_pred CCEEEEEECCCCcEEEEEECC-CCC---eEEEEECCCEE-EEEC-CCCeEEEEECC-CCcEEEEEE-ECCCCccccccee
Confidence 899999999999999888754 222 12344566653 4444 58899999998 888887775 211 24678
Q ss_pred EEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCC-------------CccceeeeeECCCCceE
Q psy6859 188 IKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK-------------NKTYPSGLSFSPDGNKF 254 (261)
Q Consensus 188 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~~~s~~~~~l 254 (261)
+.|. +++..+....++.|.+.|..+ ++.+..+.. .....+.++|+|+++.|
T Consensus 157 le~~-dg~lyvn~~~~~~V~vID~~t---------------g~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~l 220 (266)
T 2iwa_A 157 LEYI-NGEVWANIWQTDCIARISAKD---------------GTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRI 220 (266)
T ss_dssp EEEE-TTEEEEEETTSSEEEEEETTT---------------CCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEE
T ss_pred EEEE-CCEEEEecCCCCeEEEEECCC---------------CcEEEEEECCCcccccccccccccCceEEEEEcCCCCEE
Confidence 8888 776556666788999999965 333333321 11356899999998876
Q ss_pred EEee
Q psy6859 255 VTIS 258 (261)
Q Consensus 255 ~s~~ 258 (261)
+.++
T Consensus 221 fVTg 224 (266)
T 2iwa_A 221 FVTG 224 (266)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 6655
No 217
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.41 E-value=8.6e-10 Score=79.13 Aligned_cols=192 Identities=9% Similarity=0.073 Sum_probs=130.8
Q ss_pred eeeEEeeccccc--eeEEEEeeCCCEEEEEeCCC--cEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCC
Q psy6859 37 EFVKHFRSHLGV--IHSICTNYNGTLLCTVASDK--AMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD 112 (261)
Q Consensus 37 ~~~~~~~~~~~~--v~~~~~~~~~~~l~s~~~dg--~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 112 (261)
+.+.++. |... ...|.|+ ++.++.+.+.+| .|+.+|+.+++.+..+....... ...+...++.++.+ .-.
T Consensus 32 ~vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~F-geGit~~g~~ly~l---tw~ 105 (262)
T 3nol_A 32 QIVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYF-GEGISDWKDKIVGL---TWK 105 (262)
T ss_dssp EEEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCC-EEEEEEETTEEEEE---ESS
T ss_pred EEEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccc-eeEEEEeCCEEEEE---Eee
Confidence 4455564 5433 4788898 677777777776 89999999999999888765432 23344456666655 256
Q ss_pred CCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCc--c---cCeEE
Q psy6859 113 SSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLH--T---KPVVL 187 (261)
Q Consensus 113 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~---~~v~~ 187 (261)
++.+.+||..+.+.+..+...... ..++ +++.. ++++ ..++.|.++|.. +.+.+..++ .. . ..++.
T Consensus 106 ~~~v~v~D~~t~~~~~ti~~~~eG---~glt--~dg~~-L~~S-dGs~~i~~iDp~-T~~v~~~I~-V~~~g~~~~~lNE 176 (262)
T 3nol_A 106 NGLGFVWNIRNLRQVRSFNYDGEG---WGLT--HNDQY-LIMS-DGTPVLRFLDPE-SLTPVRTIT-VTAHGEELPELNE 176 (262)
T ss_dssp SSEEEEEETTTCCEEEEEECSSCC---CCEE--ECSSC-EEEC-CSSSEEEEECTT-TCSEEEEEE-CEETTEECCCEEE
T ss_pred CCEEEEEECccCcEEEEEECCCCc---eEEe--cCCCE-EEEE-CCCCeEEEEcCC-CCeEEEEEE-eccCCccccccce
Confidence 899999999999999999875422 2333 44543 2444 347889999998 888888776 21 1 33566
Q ss_pred EEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecC------------CCccceeeeeECCCCceEE
Q psy6859 188 IKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFA------------KNKTYPSGLSFSPDGNKFV 255 (261)
Q Consensus 188 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~v~~~~~s~~~~~l~ 255 (261)
+.|. +|+..+..-.+..|.+.|.++++ .+..+. .-....+.++|+|+++.|.
T Consensus 177 Le~~-~G~lyan~w~~~~I~vIDp~tG~---------------V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lf 240 (262)
T 3nol_A 177 LEWV-DGEIFANVWQTNKIVRIDPETGK---------------VTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLF 240 (262)
T ss_dssp EEEE-TTEEEEEETTSSEEEEECTTTCB---------------EEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEE
T ss_pred eEEE-CCEEEEEEccCCeEEEEECCCCc---------------EEEEEECCcCccccccccCcCCceEEEEEcCCCCEEE
Confidence 7876 77766666678899999986643 222221 1124568999999888777
Q ss_pred Eeec
Q psy6859 256 TISM 259 (261)
Q Consensus 256 s~~~ 259 (261)
..|.
T Consensus 241 VTGK 244 (262)
T 3nol_A 241 VTGK 244 (262)
T ss_dssp EEET
T ss_pred EECC
Confidence 7664
No 218
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.41 E-value=4.6e-10 Score=83.85 Aligned_cols=189 Identities=11% Similarity=0.059 Sum_probs=121.2
Q ss_pred CCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeec--cccceeEEEEeeCCCEEEEEeCC---------CcE
Q psy6859 3 RSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRS--HLGVIHSICTNYNGTLLCTVASD---------KAM 70 (261)
Q Consensus 3 ~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d---------g~v 70 (261)
...+.++++++ ++++++ . ++.|.+||.+++..+.+..... ....++.++++|+|+++++...+ ..-
T Consensus 53 ~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~ 130 (297)
T 3g4e_A 53 DAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQG 130 (297)
T ss_dssp SSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCE
T ss_pred CCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCc
Confidence 35688999999 775444 4 5689999988763333322211 12457899999999977754322 234
Q ss_pred EEEEccc-cceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEc--CCCcee--eEE-eecCCcceEEEEEE
Q psy6859 71 KVFDVIN-FDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDC--KGNDMI--NMI-KLDFTPLTVECIHY 144 (261)
Q Consensus 71 ~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~--~~~~~~--~~~-~~~~~~~~~~~~~~ 144 (261)
.+|.+.. ++... +.........+.++++++.++.. .+.++.|..||+ .++... ..+ ...........+++
T Consensus 131 ~l~~~d~~g~~~~-~~~~~~~pngi~~spdg~~lyv~---~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~ 206 (297)
T 3g4e_A 131 ALYSLFPDHHVKK-YFDQVDISNGLDWSLDHKIFYYI---DSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCI 206 (297)
T ss_dssp EEEEECTTSCEEE-EEEEESBEEEEEECTTSCEEEEE---EGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEE
T ss_pred EEEEEECCCCEEE-EeeccccccceEEcCCCCEEEEe---cCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEE
Confidence 5665543 33322 22122223456778888765443 256789999997 455432 112 22222346788999
Q ss_pred eCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEc-CCCCEEEEEc
Q psy6859 145 LGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFN-PIYQVVVSVD 201 (261)
Q Consensus 145 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~ 201 (261)
++++. +.++....+.|..||.. +++.+..+. .+...+++++|. |+++.|+.++
T Consensus 207 d~~G~--lwva~~~~~~v~~~d~~-tG~~~~~i~-~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 207 DAEGK--LWVACYNGGRVIRLDPV-TGKRLQTVK-LPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp BTTSC--EEEEEETTTEEEEECTT-TCCEEEEEE-CSSSBEEEEEEESGGGCEEEEEE
T ss_pred CCCCC--EEEEEcCCCEEEEEcCC-CceEEEEEE-CCCCCceEEEEeCCCCCEEEEEc
Confidence 99985 35666667889999997 788888886 666789999998 8888665444
No 219
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.39 E-value=6.7e-11 Score=91.88 Aligned_cols=103 Identities=13% Similarity=0.103 Sum_probs=80.6
Q ss_pred CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEe----------CCCcEEEEEccccceeeeeecc------
Q psy6859 24 GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVA----------SDKAMKVFDVINFDMINMIKLD------ 87 (261)
Q Consensus 24 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~----------~dg~v~~wd~~~~~~~~~~~~~------ 87 (261)
+.|.++|..+. +.+.++..-..+ .+.++||+++++.+. .++.|.++|..+++.+..+...
T Consensus 99 ~~VsVID~~t~--~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~ 174 (426)
T 3c75_H 99 TQQFVIDGSTG--RILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFL 174 (426)
T ss_dssp EEEEEEETTTT--EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC
T ss_pred CeEEEEECCCC--EEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccc
Confidence 79999999987 777777655455 899999999888876 3678999999999998888754
Q ss_pred -CcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEee
Q psy6859 88 -FTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKL 132 (261)
Q Consensus 88 -~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~ 132 (261)
......+.+++++++++.... ..++.|.+.|+.+++.+..+..
T Consensus 175 ~g~~P~~~~~spDGk~lyV~n~--~~~~~VsVID~~t~kvv~~I~v 218 (426)
T 3c75_H 175 VGTYQWMNALTPDNKNLLFYQF--SPAPAVGVVDLEGKTFDRMLDV 218 (426)
T ss_dssp BSCCGGGSEECTTSSEEEEEEC--SSSCEEEEEETTTTEEEEEEEC
T ss_pred cCCCcceEEEcCCCCEEEEEec--CCCCeEEEEECCCCeEEEEEEc
Confidence 122345678889988877511 1368999999999998888775
No 220
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.39 E-value=4.1e-09 Score=76.48 Aligned_cols=193 Identities=10% Similarity=-0.007 Sum_probs=135.3
Q ss_pred eEEEEEcC-CCeEEEecC--CCeEEEEeccCCceeeeEEeecccc-ceeEEEEeeCCCEEEEE-eCCCcEEEEEccccce
Q psy6859 6 ITHVVVTK-TDFVITASN--DGHIKFWKKQEEGIEFVKHFRSHLG-VIHSICTNYNGTLLCTV-ASDKAMKVFDVINFDM 80 (261)
Q Consensus 6 v~~~~~~~-~~~l~s~~~--d~~i~iw~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~-~~dg~v~~wd~~~~~~ 80 (261)
...++|+| +.++++.+. ++.|.+.|+.++ +.+..+.-... ....+++. ++.|+.+ -.++.+.++|..+.+.
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg--~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v 98 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTG--KVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSN 98 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTC--CEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEE
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCC--CEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcE
Confidence 57899999 655555443 689999999987 55555442111 12344444 4455444 4688999999999999
Q ss_pred eeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcc---eEEEEEEeCCCCceEEEEec
Q psy6859 81 INMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPL---TVECIHYLGDAIPTAAVSDQ 157 (261)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 157 (261)
+.++... .+. ...+.++++.++.. ..++.|.++|..+.+.+..+.....+. ....+.+. ++. +++...
T Consensus 99 ~~~i~~g-~~~-g~glt~Dg~~l~vs----~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~--lyvn~~ 169 (266)
T 2iwa_A 99 IKNFTHQ-MKD-GWGLATDGKILYGS----DGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGE--VWANIW 169 (266)
T ss_dssp EEEEECC-SSS-CCEEEECSSSEEEE----CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE--EEEEET
T ss_pred EEEEECC-CCC-eEEEEECCCEEEEE----CCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCE--EEEecC
Confidence 9988765 222 23466678777655 568899999999998888877543221 35567777 552 456666
Q ss_pred CCCeEEEEEccCCCccceeeccCc-------------ccCeEEEEEcCCCC-EEEEEcCCCeEEEeeccc
Q psy6859 158 DSSHVHIYDCKGNGTPLHVLDRLH-------------TKPVVLIKFNPIYQ-VVVSVDKAGILEYWSGYK 213 (261)
Q Consensus 158 ~d~~i~i~d~~~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~ 213 (261)
.++.|.+.|.. +++.+..+. .. ....+.|+|+|+++ +++++...+.+...++..
T Consensus 170 ~~~~V~vID~~-tg~V~~~I~-~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 170 QTDCIARISAK-DGTLLGWIL-LPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp TSSEEEEEETT-TCCEEEEEE-CHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred CCCeEEEEECC-CCcEEEEEE-CCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 68899999999 898888886 21 13568999999987 456777888899988854
No 221
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.36 E-value=4.7e-10 Score=85.73 Aligned_cols=215 Identities=10% Similarity=0.026 Sum_probs=135.9
Q ss_pred EEEEEcC-CCeEEEecC--CCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccc-cceee
Q psy6859 7 THVVVTK-TDFVITASN--DGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVIN-FDMIN 82 (261)
Q Consensus 7 ~~~~~~~-~~~l~s~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~-~~~~~ 82 (261)
..++|+| +++++.+.. ++.|.++|+.+. +.+.++.-. + . ...+....+.+++.+.||.+.+.++.+ ++...
T Consensus 140 ~~~a~spDGk~lyVan~~~~~~VsVID~~t~--~vv~tI~v~-g-~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~ 214 (386)
T 3sjl_D 140 WMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK--AFKRMLDVP-D-C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI 214 (386)
T ss_dssp GGEEECTTSSEEEEEECSSSCEEEEEETTTT--EEEEEEECC-S-E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEE
T ss_pred ceEEEcCCCCEEEEEEcCCCCeEEEEECCCC--cEEEEEECC-C-c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEE
Confidence 3588999 887777653 689999999987 777776522 1 1 223333556777888899999999875 55422
Q ss_pred eee----ccCcceeE-EEE-eecCCceeeeeeecCCCCeEEEEEcCCCc--eeeEEee--------cCCcceEEEEEEeC
Q psy6859 83 MIK----LDFTPLTV-ECI-HYLGDAIPTAAVSDQDSSRVHIYDCKGND--MINMIKL--------DFTPLTVECIHYLG 146 (261)
Q Consensus 83 ~~~----~~~~~~~~-~~~-~~~~~~~~~~~~s~~~d~~i~i~d~~~~~--~~~~~~~--------~~~~~~~~~~~~~~ 146 (261)
... ....+... ..+ .++++ ++.. +.++.|.+.|+.+.. ....+.. ...+.....+.+++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~dG~-~~~v----s~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~ 289 (386)
T 3sjl_D 215 THTEVFHPEDEFLINHPAYSQKAGR-LVWP----TYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR 289 (386)
T ss_dssp EECCCCSCTTSCBCSCCEEETTTTE-EEEE----BTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET
T ss_pred eecceeccccccccccceeEcCCCc-EEEE----eCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECC
Confidence 111 11111110 122 23443 3333 568999999997664 3333321 01122333467788
Q ss_pred CCCceEEEEec--------CCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCC-EEEEE-cCCCeEEEeecccccc
Q psy6859 147 DAIPTAAVSDQ--------DSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQ-VVVSV-DKAGILEYWSGYKQEF 216 (261)
Q Consensus 147 ~~~~~~~~~~~--------~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~~dg~i~iwd~~~~~~ 216 (261)
++..++++... ..+.|.++|+. +.+.++.+. -...+.+|.++||++ +|++. ..++.|.++|..+
T Consensus 290 ~~~~lyV~~~~~~~~~hk~~~~~V~viD~~-t~kv~~~i~--vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t--- 363 (386)
T 3sjl_D 290 ALDRIYLLVDQRDEWRHKTASRFVVVLDAK-TGERLAKFE--MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAES--- 363 (386)
T ss_dssp TTTEEEEEEEECCTTCTTSCEEEEEEEETT-TCCEEEEEE--EEEEECEEEECSSSSCEEEEEETTTTEEEEEETTT---
T ss_pred CCCeEEEEeccccccccCCCCCEEEEEECC-CCeEEEEEE--CCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCC---
Confidence 88875444331 12579999999 999999985 445788999999997 66654 5689999999954
Q ss_pred cCCeeeeeecccccceeecCCCccceeeeeECCC
Q psy6859 217 KFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPD 250 (261)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 250 (261)
++.+.++..- ...+.|.+++|
T Consensus 364 ------------~k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 364 ------------GEELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp ------------CCEEEEECCC-CSSCCEEEECC
T ss_pred ------------CcEEEEecCC-CCCceeEECCc
Confidence 6667666542 33456677776
No 222
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.36 E-value=4.8e-10 Score=89.44 Aligned_cols=230 Identities=10% Similarity=0.031 Sum_probs=149.6
Q ss_pred CCeE-EEecCCCeEEEEeccCCceeeeEEeec-cccceeEEEE-e-eCCCEEEEEe------------------CCCcEE
Q psy6859 14 TDFV-ITASNDGHIKFWKKQEEGIEFVKHFRS-HLGVIHSICT-N-YNGTLLCTVA------------------SDKAMK 71 (261)
Q Consensus 14 ~~~l-~s~~~d~~i~iw~~~~~~~~~~~~~~~-~~~~v~~~~~-~-~~~~~l~s~~------------------~dg~v~ 71 (261)
|+++ ++...++.|.+.|+++. +....+.- ....+..+++ + |+++++++++ .++.+.
T Consensus 101 G~~lfVnd~~~~rVavIdl~t~--~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 101 GRFLFMNDKANTRVARVRCDVM--KCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEETTTTEEEEEETTTT--EEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred CCEEEEEcCCCCEEEEEECCCc--eEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 3444 45556678999999987 55553321 1234678887 5 8999998884 245799
Q ss_pred EEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCC----------------------------------CCeEE
Q psy6859 72 VFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD----------------------------------SSRVH 117 (261)
Q Consensus 72 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~----------------------------------d~~i~ 117 (261)
+.|..+.+.+.++.....+ ..+.++++++++++....... -+.|.
T Consensus 179 vID~~t~~v~~qI~Vgg~p-d~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSGNL-DNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EEETTTTEEEEEEEESSCC-CCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EEECCCCeEEEEEEeCCCc-cceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 9999999988888865543 455677777776665322100 13478
Q ss_pred EEEcCC--Cce-eeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCc------------cceeeccCcc
Q psy6859 118 IYDCKG--NDM-INMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGT------------PLHVLDRLHT 182 (261)
Q Consensus 118 i~d~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~------------~~~~~~~~~~ 182 (261)
+.|.++ ++. +..+.... ...++.++||+++ +++++..+.+|.++|+. +.+ .+.++ .-.
T Consensus 258 VID~~~~~~~~~~~~Ipvg~---~PhGv~~sPDGk~-v~V~~~~s~~VsVid~~-~~~~~~~~~l~~~~~v~~~v--~vG 330 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPIAN---NPHGCNMAPDKKH-LCVAGKLSPTVTVLDVT-RFDAVFYENADPRSAVVAEP--ELG 330 (595)
T ss_dssp EEECSGGGCCSSEEEEEEES---SCCCEEECTTSSE-EEEECTTSSBEEEEEGG-GHHHHHHSCCCGGGGEEECC--BCC
T ss_pred EEeCcccCCceeEEEEecCC---CceEEEEcCCCCE-EEEeCCCCCeEEEEECc-ccccccccccCcccceEEEc--CCC
Confidence 888887 444 45555433 3478999999996 47777789999999998 442 23333 234
Q ss_pred cCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCC-----CccceeeeeECCCCceEEEe
Q psy6859 183 KPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK-----NKTYPSGLSFSPDGNKFVTI 257 (261)
Q Consensus 183 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~s~ 257 (261)
.....++|+|+|....+...|+.|.+||+......+.. .+..+.+..+.. |...-.++.++|||++|+++
T Consensus 331 ~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g-----~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~ 405 (595)
T 1fwx_A 331 LGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAG-----EKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCL 405 (595)
T ss_dssp SCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHT-----CSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEE
T ss_pred CCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcc-----cccceeEEEeecccccccceeccceEeCCCCCEEEEc
Confidence 56789999999944456668999999998652100000 001223333333 33333456789999999987
Q ss_pred e
Q psy6859 258 S 258 (261)
Q Consensus 258 ~ 258 (261)
.
T Consensus 406 N 406 (595)
T 1fwx_A 406 S 406 (595)
T ss_dssp E
T ss_pred C
Confidence 4
No 223
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.36 E-value=2.3e-09 Score=82.50 Aligned_cols=184 Identities=10% Similarity=-0.051 Sum_probs=120.4
Q ss_pred CCeEEEecC--CC---eEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEe----------CCCcEEEEEcccc
Q psy6859 14 TDFVITASN--DG---HIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVA----------SDKAMKVFDVINF 78 (261)
Q Consensus 14 ~~~l~s~~~--d~---~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~----------~dg~v~~wd~~~~ 78 (261)
++++++... .. +|.++|..+. +.+..+.....+ .++++||+++++.+. .++.|.+||..+.
T Consensus 32 ~~~~yv~~~~~~~~~~~v~v~D~~t~--~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~ 107 (373)
T 2mad_H 32 GRRSYINLPAHHSAIIQQWVLDAGSG--SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF 107 (373)
T ss_pred CCEEEEeCCcccCCccEEEEEECCCC--eEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC
Confidence 555555443 33 8899999887 666666644343 999999999999886 3678999999998
Q ss_pred ceeeeeecc-------CcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeE-EeecCCcceEEEEEEeCCCCc
Q psy6859 79 DMINMIKLD-------FTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINM-IKLDFTPLTVECIHYLGDAIP 150 (261)
Q Consensus 79 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 150 (261)
+.+..+... ........+++++++++.... ..++.|.++| .+++.+.. +.... ++.+.|++..
T Consensus 108 ~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~--~~~~~v~viD-~t~~~~~~~i~~~~------~~~~~~~~~~ 178 (373)
T 2mad_H 108 LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQF--AAGPAVGLVV-QGGSSDDQLLSSPT------CYHIHPGAPS 178 (373)
T ss_pred cEEEEEECCCccccccCCCccceEECCCCCEEEEEec--CCCCeEEEEE-CCCCEEeEEcCCCc------eEEEEeCCCc
Confidence 888877654 112235678899998877611 1257899999 99988776 54321 2445566554
Q ss_pred eEEEEecCCCeEEEEEccCCCccceeec----cCcccC-eEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859 151 TAAVSDQDSSHVHIYDCKGNGTPLHVLD----RLHTKP-VVLIKFNPIYQVVVSVDKAGILEYWSGYK 213 (261)
Q Consensus 151 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~~~-v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 213 (261)
. +++.+.||.+.++|. +++.+.... .....+ .....+.+++..++..+..+.+.+.|+..
T Consensus 179 ~-~~~~~~dg~~~~vd~--~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~ 243 (373)
T 2mad_H 179 T-FYLLCAQGGLAKTDH--AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISA 243 (373)
T ss_pred e-EEEEcCCCCEEEEEC--CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccC
Confidence 3 455667999999998 444432221 001112 22345677766544444678899999854
No 224
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.34 E-value=2.2e-10 Score=87.54 Aligned_cols=211 Identities=11% Similarity=-0.023 Sum_probs=126.9
Q ss_pred EEEEcC-CCeEEEec----------CCCeEEEEeccCCceeeeEEeecc-------ccceeEEEEeeCCCEEEEEeC--C
Q psy6859 8 HVVVTK-TDFVITAS----------NDGHIKFWKKQEEGIEFVKHFRSH-------LGVIHSICTNYNGTLLCTVAS--D 67 (261)
Q Consensus 8 ~~~~~~-~~~l~s~~----------~d~~i~iw~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~s~~~--d 67 (261)
.++++| +++++++. .++.|.+||..+. +.+.++... ......++++|||++++.+.. +
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~--~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~ 146 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF--LPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSS 146 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC--CEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSS
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC--CEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCC
Confidence 689999 77777665 4789999999987 667776533 123578999999999998864 4
Q ss_pred CcEEE--EEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCC--------------------------------
Q psy6859 68 KAMKV--FDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS-------------------------------- 113 (261)
Q Consensus 68 g~v~~--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d-------------------------------- 113 (261)
..+.+ +|..+ +..+..... ..+.++++..+.. .+.|
T Consensus 147 ~~v~V~~iD~~t---v~~i~v~~~----~~~~p~g~~~~~~---~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P 216 (368)
T 1mda_H 147 AAAGLSVPGASD---DQLTKSASC----FHIHPGAAATHYL---GSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQA 216 (368)
T ss_dssp CEEEEEETTTEE---EEEEECSSC----CCCEEEETTEEEC---CCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCC
T ss_pred CeEEEEEEchhh---ceEEECCCc----eEEccCCCeEEEE---EcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCc
Confidence 57888 89876 333332110 0011111111100 0122
Q ss_pred --------------CeEEEEEcCCCc--eeeEEeecC--------CcceEEEEEEeCCCCceEEEEe-c-C-----CCeE
Q psy6859 114 --------------SRVHIYDCKGND--MINMIKLDF--------TPLTVECIHYLGDAIPTAAVSD-Q-D-----SSHV 162 (261)
Q Consensus 114 --------------~~i~i~d~~~~~--~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~-~-~-----d~~i 162 (261)
+.+.+.|+.+.. .+..+.... .+.....+.++|++..+++... . . ++.+
T Consensus 217 ~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~ 296 (368)
T 1mda_H 217 AQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENT 296 (368)
T ss_dssp EEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEE
T ss_pred cccccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCE
Confidence 445555554321 111111100 0111112678999886433332 1 2 2356
Q ss_pred EEEEccCCCccceeeccCcccCeEEEEEcCCCC-EEEEEc-CCCeEEEeecccccccCCeeeeeecccccceeecCCCcc
Q psy6859 163 HIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQ-VVVSVD-KAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT 240 (261)
Q Consensus 163 ~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (261)
.++|+. +.+.+..+. -......++|+|||+ ++++.. .++.|.++|+.+ .+.+.++... .
T Consensus 297 ~ViD~~-t~~vv~~i~--vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t---------------~kvv~~I~vg-~ 357 (368)
T 1mda_H 297 SSVTAS-VGQTSGPIS--NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS---------------DQDQSSVELD-K 357 (368)
T ss_dssp EEEESS-SCCEEECCE--EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSS---------------CEEEEECCCC-S
T ss_pred EEEECC-CCeEEEEEE--CCCCcceEEECCCCCEEEEEccCCCCeEEEEECCC---------------CcEEEEEECC-C
Confidence 699999 888888885 333689999999998 455665 589999999954 6667666643 3
Q ss_pred ceeeeeECC
Q psy6859 241 YPSGLSFSP 249 (261)
Q Consensus 241 ~v~~~~~s~ 249 (261)
....+++.+
T Consensus 358 ~P~~i~~~~ 366 (368)
T 1mda_H 358 GPESLSVQN 366 (368)
T ss_dssp CCCEEECCC
T ss_pred CCCEEEeec
Confidence 345666654
No 225
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=99.33 E-value=9.2e-09 Score=73.20 Aligned_cols=201 Identities=9% Similarity=0.054 Sum_probs=129.6
Q ss_pred eeeEEeeccccc--eeEEEEeeCCCEEEEEeCCC--cEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCC
Q psy6859 37 EFVKHFRSHLGV--IHSICTNYNGTLLCTVASDK--AMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD 112 (261)
Q Consensus 37 ~~~~~~~~~~~~--v~~~~~~~~~~~l~s~~~dg--~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 112 (261)
+.+.++. |... ...+.|++ +.++.+.+.+| .|+.+|+.+++.+..+..+..... ..+...++.++.+ .-.
T Consensus 10 ~v~~~~p-hd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fg-eGi~~~~~~ly~l---tw~ 83 (243)
T 3mbr_X 10 RVVKRYP-HDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFG-AGIVAWRDRLIQL---TWR 83 (243)
T ss_dssp EEEEEEE-CCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCE-EEEEEETTEEEEE---ESS
T ss_pred EEEEEcC-CCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcce-eEEEEeCCEEEEE---Eee
Confidence 5566663 6543 56889986 56666767654 899999999999998887655422 2233445666654 257
Q ss_pred CCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcc-----cCeEE
Q psy6859 113 SSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHT-----KPVVL 187 (261)
Q Consensus 113 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-----~~v~~ 187 (261)
++.+.+||.++.+.+..+.....+ ..++ +++.. ++++- .++.|.++|.. +.+.+.+++ ... ..++.
T Consensus 84 ~~~v~v~D~~tl~~~~ti~~~~~G---wglt--~dg~~-L~vSd-gs~~l~~iDp~-t~~~~~~I~-V~~~g~~~~~lNe 154 (243)
T 3mbr_X 84 NHEGFVYDLATLTPRARFRYPGEG---WALT--SDDSH-LYMSD-GTAVIRKLDPD-TLQQVGSIK-VTAGGRPLDNLNE 154 (243)
T ss_dssp SSEEEEEETTTTEEEEEEECSSCC---CEEE--ECSSC-EEEEC-SSSEEEEECTT-TCCEEEEEE-CEETTEECCCEEE
T ss_pred CCEEEEEECCcCcEEEEEeCCCCc---eEEe--eCCCE-EEEEC-CCCeEEEEeCC-CCeEEEEEE-EccCCccccccee
Confidence 899999999999999999875432 3444 44443 34454 48899999998 888888776 221 34566
Q ss_pred EEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeec----CCCccceeeeeECCCCceEEEeec
Q psy6859 188 IKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEF----AKNKTYPSGLSFSPDGNKFVTISM 259 (261)
Q Consensus 188 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~s~~~ 259 (261)
+.+. +|+..+..-.+..|.+.|.++++.... . ....+.... .......+.++++|+++.|...+.
T Consensus 155 Le~~-~G~lyanvw~s~~I~vIDp~tG~V~~~----i--dl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 155 LEWV-NGELLANVWLTSRIARIDPASGKVVAW----I--DLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEE-TTEEEEEETTTTEEEEECTTTCBEEEE----E--ECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred eEEe-CCEEEEEECCCCeEEEEECCCCCEEEE----E--ECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 7765 676556665677899999866432100 0 000000000 112245689999998777766553
No 226
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.31 E-value=3.8e-09 Score=75.85 Aligned_cols=181 Identities=12% Similarity=0.100 Sum_probs=125.1
Q ss_pred eEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCC-EEEEEeCCCcEEEEEccccceeeee
Q psy6859 6 ITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGT-LLCTVASDKAMKVFDVINFDMINMI 84 (261)
Q Consensus 6 v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~v~~wd~~~~~~~~~~ 84 (261)
...+.|+.+.++.+.+.+|.|+++|++++ +.+..+ -..........++++ ..+..-.++.+.+||..+.+.+.++
T Consensus 57 tqGL~~~~~~Ly~stG~~g~v~~iD~~Tg--kv~~~~--l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti 132 (268)
T 3nok_A 57 TQGLVFHQGHFFESTGHQGTLRQLSLESA--QPVWME--RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTT 132 (268)
T ss_dssp EEEEEEETTEEEEEETTTTEEEECCSSCS--SCSEEE--ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred cceEEEECCEEEEEcCCCCEEEEEECCCC--cEEeEE--CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEE
Confidence 35778877778888899999999999987 444444 123334422333333 4444457889999999999999998
Q ss_pred eccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcc---eEEEEEEeCCCCceEEEEecCCCe
Q psy6859 85 KLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPL---TVECIHYLGDAIPTAAVSDQDSSH 161 (261)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~ 161 (261)
...... ..+.++++.++.. ..++.|.++|..+.+.+..+.....+. .+..+.+. ++. +++..-.+..
T Consensus 133 ~~~~eG---wGLt~Dg~~L~vS----dGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~--lyanvw~s~~ 202 (268)
T 3nok_A 133 RYSGEG---WGLCYWNGKLVRS----DGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV--IYANIWHSSD 202 (268)
T ss_dssp ECSSCC---CCEEEETTEEEEE----CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE--EEEEETTCSE
T ss_pred eCCCce---eEEecCCCEEEEE----CCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE--EEEEECCCCe
Confidence 865443 2333567766655 568999999999999888887644332 23556666 443 3566556889
Q ss_pred EEEEEccCCCccceeeccC------------cccCeEEEEEcCCCCEEEEEc
Q psy6859 162 VHIYDCKGNGTPLHVLDRL------------HTKPVVLIKFNPIYQVVVSVD 201 (261)
Q Consensus 162 i~i~d~~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~l~~~~ 201 (261)
|.+.|.+ +++.+..+... .....+.|+++|+++.|+..+
T Consensus 203 I~vIDp~-TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 203 VLEIDPA-TGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEEECTT-TCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEEEeCC-CCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 9999998 99888877511 123578999999876554433
No 227
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.31 E-value=1.8e-09 Score=84.29 Aligned_cols=198 Identities=9% Similarity=-0.025 Sum_probs=117.5
Q ss_pred ceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCC--eEEEEEcCCCc
Q psy6859 48 VIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS--RVHIYDCKGND 125 (261)
Q Consensus 48 ~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~--~i~i~d~~~~~ 125 (261)
....|+|+++++++++...++.|+.||..+++.......... .. ..+.++++.++.. ..++ .|.+++..++.
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~----d~~~~~~I~~~d~~~~~ 205 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSI----GWEGTHTVYVYMKASGW 205 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEE----BSSTTCEEEEEEGGGTT
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEE----ecCCCceEEEEEcCCCc
Confidence 567899999998777777788999999987766554443322 33 6777888766665 4433 89999987665
Q ss_pred eeeEEe-ecC-CcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceee----ccCcccCe--EEEEEcCC-CCE
Q psy6859 126 MINMIK-LDF-TPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVL----DRLHTKPV--VLIKFNPI-YQV 196 (261)
Q Consensus 126 ~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~----~~~~~~~v--~~~~~~~~-~~~ 196 (261)
....+. ... ....+.+++++|+... +++ +..++.|+.||.. .+.. ..+ ..+....- ..++|+|+ +.+
T Consensus 206 ~~~~~g~~~~~~~~~p~~iav~p~~g~-lyv-~d~~~~I~~~d~~-~~~~-~~~~~~~~~g~~~~~P~~~ia~~p~~g~l 281 (409)
T 3hrp_A 206 APTRIGQLGSTFSGKIGAVALDETEEW-LYF-VDSNKNFGRFNVK-TQEV-TLIKQLELSGSLGTNPGPYLIYYFVDSNF 281 (409)
T ss_dssp CEEEEEECCTTSCSCCCBCEECTTSSE-EEE-ECTTCEEEEEETT-TCCE-EEEEECCCCSCCCCSSCCEEEEETTTTEE
T ss_pred eeEEeeeccchhcCCcEEEEEeCCCCe-EEE-EECCCcEEEEECC-CCCE-EEEecccccCCCCCCccccEEEeCCCCEE
Confidence 433331 111 2335678899995443 233 5568899999987 4432 222 10222221 39999995 556
Q ss_pred EEEEcCCCeEEEeecccccccCCeeeeeecccccce-eecCCCccceeeeeECCCCceEEEee
Q psy6859 197 VVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDL-FEFAKNKTYPSGLSFSPDGNKFVTIS 258 (261)
Q Consensus 197 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~s~~ 258 (261)
+++-..++.|+.|+........... ....+..- ......-.....++++|+|+++++-+
T Consensus 282 yv~d~~~~~I~~~~~~g~~~~~~g~---~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~ 341 (409)
T 3hrp_A 282 YMSDQNLSSVYKITPDGECEWFCGS---ATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG 341 (409)
T ss_dssp EEEETTTTEEEEECTTCCEEEEEEC---TTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET
T ss_pred EEEeCCCCEEEEEecCCCEEEEEeC---CCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC
Confidence 6666788899999875320000000 00000000 00000123478899999998666544
No 228
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.30 E-value=2.9e-10 Score=94.73 Aligned_cols=195 Identities=7% Similarity=-0.013 Sum_probs=118.1
Q ss_pred cccceeEEEEeeCCCEEEEEe-----CCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeec---------
Q psy6859 45 HLGVIHSICTNYNGTLLCTVA-----SDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSD--------- 110 (261)
Q Consensus 45 ~~~~v~~~~~~~~~~~l~s~~-----~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--------- 110 (261)
|...+..++|+|||++|+-+. ....|++||+.+++.+... ..........++ +++.++....-.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence 445788899999999888432 2357999999999865531 111112344566 887776651110
Q ss_pred CCCCeEEEEEcCCCce--eeEEeecC-CcceEEEEEEeCCCCceEEEEec--CCCeEEEEEccCCC-ccceeeccCcccC
Q psy6859 111 QDSSRVHIYDCKGNDM--INMIKLDF-TPLTVECIHYLGDAIPTAAVSDQ--DSSHVHIYDCKGNG-TPLHVLDRLHTKP 184 (261)
Q Consensus 111 ~~d~~i~i~d~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~d~~i~i~d~~~~~-~~~~~~~~~~~~~ 184 (261)
.....|++|++.+... ...+.... ++.....+.++|++.++++.+.. ..+.|+++|+. ++ .....+. .+...
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~-~~~~~~~~l~-~~~~~ 282 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLS-QENAPLLTVQ-GDLDA 282 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETT-STTCCCEEEE-CSSSS
T ss_pred CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECC-CCCCceEEEe-CCCCc
Confidence 1124599999987653 23333322 33456789999999975444332 23589999997 44 2455554 55555
Q ss_pred eEEEEEcCCCCEE-EEEcCC---CeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeec
Q psy6859 185 VVLIKFNPIYQVV-VSVDKA---GILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISM 259 (261)
Q Consensus 185 v~~~~~~~~~~~l-~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 259 (261)
.... ++++|..| +....+ +.|..+|+.+.. ......+..|...+. .|+|++++|+....
T Consensus 283 ~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~-------------~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~ 345 (693)
T 3iuj_A 283 DVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPG-------------PAHWRDLIPERQQVL--TVHSGSGYLFAEYM 345 (693)
T ss_dssp CEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCC-------------GGGCEEEECCCSSCE--EEEEETTEEEEEEE
T ss_pred eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCC-------------ccccEEEecCCCCEE--EEEEECCEEEEEEE
Confidence 5555 66666655 444443 578888885421 111233444555544 88888888776653
No 229
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.29 E-value=5.9e-09 Score=74.85 Aligned_cols=191 Identities=6% Similarity=-0.002 Sum_probs=128.6
Q ss_pred eeeEEeeccccc--eeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCC
Q psy6859 37 EFVKHFRSHLGV--IHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS 114 (261)
Q Consensus 37 ~~~~~~~~~~~~--v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~ 114 (261)
+.+.++. |... ...+.|+ ++.++.+.+.+|.|+.+|+.+++.+..+ ..... ....+...++.++.+ .-.++
T Consensus 44 ~Vv~~~p-hd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~-FgeGit~~g~~Ly~l---tw~~~ 116 (268)
T 3nok_A 44 HIIREYP-HATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNI-FAEGLASDGERLYQL---TWTEG 116 (268)
T ss_dssp EEEEEEE-CCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTC-CEEEEEECSSCEEEE---ESSSC
T ss_pred EEEEEEc-CCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCc-ceeEEEEeCCEEEEE---EccCC
Confidence 3445553 4433 3688887 4667778888999999999999998888 55443 223344556666654 25789
Q ss_pred eEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeecc-Ccc---cCeEEEEE
Q psy6859 115 RVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDR-LHT---KPVVLIKF 190 (261)
Q Consensus 115 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~---~~v~~~~~ 190 (261)
.+.+||.++.+.+..+...... ..+++ ++.. ++++. .++.|.++|.. +.+.+.+++- ... ..++.+.|
T Consensus 117 ~v~V~D~~Tl~~~~ti~~~~eG---wGLt~--Dg~~-L~vSd-Gs~~l~~iDp~-T~~v~~~I~V~~~g~~v~~lNeLe~ 188 (268)
T 3nok_A 117 LLFTWSGMPPQRERTTRYSGEG---WGLCY--WNGK-LVRSD-GGTMLTFHEPD-GFALVGAVQVKLRGQPVELINELEC 188 (268)
T ss_dssp EEEEEETTTTEEEEEEECSSCC---CCEEE--ETTE-EEEEC-SSSEEEEECTT-TCCEEEEEECEETTEECCCEEEEEE
T ss_pred EEEEEECCcCcEEEEEeCCCce---eEEec--CCCE-EEEEC-CCCEEEEEcCC-CCeEEEEEEeCCCCcccccccccEE
Confidence 9999999999999999865332 34443 4443 34444 48899999998 8888887761 111 24577787
Q ss_pred cCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecC-------------CCccceeeeeECCCCceEEEe
Q psy6859 191 NPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFA-------------KNKTYPSGLSFSPDGNKFVTI 257 (261)
Q Consensus 191 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~v~~~~~s~~~~~l~s~ 257 (261)
. +|+..+..-.+..|.+.|.++++ .+..+. .-....+.|+|+|+++.|...
T Consensus 189 ~-dG~lyanvw~s~~I~vIDp~TG~---------------V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVT 252 (268)
T 3nok_A 189 A-NGVIYANIWHSSDVLEIDPATGT---------------VVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMT 252 (268)
T ss_dssp E-TTEEEEEETTCSEEEEECTTTCB---------------EEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEE
T ss_pred e-CCEEEEEECCCCeEEEEeCCCCc---------------EEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEe
Confidence 7 77655666578899999986643 222221 122466899999987766655
Q ss_pred e
Q psy6859 258 S 258 (261)
Q Consensus 258 ~ 258 (261)
+
T Consensus 253 G 253 (268)
T 3nok_A 253 G 253 (268)
T ss_dssp E
T ss_pred C
Confidence 5
No 230
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.28 E-value=9.5e-09 Score=73.79 Aligned_cols=181 Identities=7% Similarity=0.022 Sum_probs=124.8
Q ss_pred EEEEEcCCCeEEEecCCC--eEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEe-CCCcEEEEEccccceeee
Q psy6859 7 THVVVTKTDFVITASNDG--HIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVA-SDKAMKVFDVINFDMINM 83 (261)
Q Consensus 7 ~~~~~~~~~~l~s~~~d~--~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~v~~wd~~~~~~~~~ 83 (261)
..+.|+.+.++.+.+.+| .|+++|++++ +.+..+.-. .........++++.|.... .++.+.++|..+.+.+.+
T Consensus 46 qGL~~~~~~LyestG~~g~S~v~~vD~~Tg--kv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~t 122 (262)
T 3nol_A 46 EGFFYRNGYFYESTGLNGRSSIRKVDIESG--KTLQQIELG-KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRS 122 (262)
T ss_dssp EEEEEETTEEEEEEEETTEEEEEEECTTTC--CEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred ceEEEECCEEEEECCCCCCceEEEEECCCC--cEEEEEecC-CccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEE
Confidence 677787665666777766 8999999987 555555432 3444443444455555554 688999999999999999
Q ss_pred eeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCc---ceEEEEEEeCCCCceEEEEecCCC
Q psy6859 84 IKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTP---LTVECIHYLGDAIPTAAVSDQDSS 160 (261)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~ 160 (261)
+...... ..+.++++.++.. ..++.|.++|..+.+.+..+...... ..+..+.+. ++. +++..-.++
T Consensus 123 i~~~~eG---~glt~dg~~L~~S----dGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~--lyan~w~~~ 192 (262)
T 3nol_A 123 FNYDGEG---WGLTHNDQYLIMS----DGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE--IFANVWQTN 192 (262)
T ss_dssp EECSSCC---CCEEECSSCEEEC----CSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE--EEEEETTSS
T ss_pred EECCCCc---eEEecCCCEEEEE----CCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE--EEEEEccCC
Confidence 8875433 2334566666554 55788999999999988888764322 233446665 453 456665688
Q ss_pred eEEEEEccCCCccceeeccC-----------cccCeEEEEEcCCCCEEEEEc
Q psy6859 161 HVHIYDCKGNGTPLHVLDRL-----------HTKPVVLIKFNPIYQVVVSVD 201 (261)
Q Consensus 161 ~i~i~d~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~ 201 (261)
.|.+.|.+ +++.+..+... .....+.|+|+|+++.|+..+
T Consensus 193 ~I~vIDp~-tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 193 KIVRIDPE-TGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEEEECTT-TCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred eEEEEECC-CCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 99999998 99888877511 023568999999988765555
No 231
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.27 E-value=4.8e-10 Score=85.69 Aligned_cols=103 Identities=12% Similarity=-0.052 Sum_probs=76.6
Q ss_pred CeEEEecCCC----eEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEe----------CCCcEEEEEccccce
Q psy6859 15 DFVITASNDG----HIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVA----------SDKAMKVFDVINFDM 80 (261)
Q Consensus 15 ~~l~s~~~d~----~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~----------~dg~v~~wd~~~~~~ 80 (261)
..+++-..++ +|.+.|..+. +.+.++.....+ .+.++||+++++.+. .++.|.+||+.+++.
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t~--~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v 108 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGCG--VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP 108 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTT--EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE
T ss_pred eEEEECCccCCccceEEEEECCCC--eEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE
Confidence 3455555555 8889999887 777777655555 799999999998886 368899999999999
Q ss_pred eeeeeccC-------cceeEEEEeecCCceeeeeeecCCCCeEEE--EEcCC
Q psy6859 81 INMIKLDF-------TPLTVECIHYLGDAIPTAAVSDQDSSRVHI--YDCKG 123 (261)
Q Consensus 81 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i--~d~~~ 123 (261)
+.++..+. .....+.+++++++++.... +.+..+.+ +|+.+
T Consensus 109 v~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~--~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 109 IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLF--GSSAAAGLSVPGASD 158 (368)
T ss_dssp EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEEC--SSSCEEEEEETTTEE
T ss_pred EEEEECCCccccccCCCcceEEEcCCCCEEEEEcc--CCCCeEEEEEEchhh
Confidence 99987651 22346788899988877611 12467888 88866
No 232
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.27 E-value=2.6e-09 Score=88.61 Aligned_cols=222 Identities=12% Similarity=0.084 Sum_probs=141.3
Q ss_pred CCeEEEecC------CCeEEEEeccCCceeeeEEeecccc--------------------------------ceeEEEEe
Q psy6859 14 TDFVITASN------DGHIKFWKKQEEGIEFVKHFRSHLG--------------------------------VIHSICTN 55 (261)
Q Consensus 14 ~~~l~s~~~------d~~i~iw~~~~~~~~~~~~~~~~~~--------------------------------~v~~~~~~ 55 (261)
+..++.++. ++.|+.+|..++ +.+..+..... ....++++
T Consensus 174 ~~~v~v~~~~~~~~~~g~v~a~D~~tG--~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d 251 (677)
T 1kb0_A 174 KGKVIIGNGGAEYGVRGYITAYDAETG--ERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFD 251 (677)
T ss_dssp TTEEEECCBCTTTCCBCEEEEEETTTC--CEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEE
T ss_pred CCEEEEEecccccCCCCEEEEEECCCC--cEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEc
Confidence 345555543 789999999887 45544432111 11357888
Q ss_pred eCCCEEEEEeCCC-------------------cEEEEEccccceeeeeeccCc---------ceeEEEEeecCCceeeee
Q psy6859 56 YNGTLLCTVASDK-------------------AMKVFDVINFDMINMIKLDFT---------PLTVECIHYLGDAIPTAA 107 (261)
Q Consensus 56 ~~~~~l~s~~~dg-------------------~v~~wd~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 107 (261)
+++..++.+..++ .|..+|..+|+.+..++...+ .........+++.. -.+
T Consensus 252 ~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~-~~l 330 (677)
T 1kb0_A 252 AELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPR-KVI 330 (677)
T ss_dssp TTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEE-EEE
T ss_pred CCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEe-eEE
Confidence 8888888877664 499999999999888775322 11122222344211 122
Q ss_pred eecCCCCeEEEEEcCCCceeeEEeecCCc--------c-eE------------------------EEEEEeCCCCceEEE
Q psy6859 108 VSDQDSSRVHIYDCKGNDMINMIKLDFTP--------L-TV------------------------ECIHYLGDAIPTAAV 154 (261)
Q Consensus 108 ~s~~~d~~i~i~d~~~~~~~~~~~~~~~~--------~-~~------------------------~~~~~~~~~~~~~~~ 154 (261)
+.++.+|.++++|.++++.+..+.....+ . .+ ..++++|+...+++.
T Consensus 331 ~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~ 410 (677)
T 1kb0_A 331 LHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLP 410 (677)
T ss_dssp EECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEE
T ss_pred EEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEe
Confidence 33489999999999999988766532111 0 01 145778876642222
Q ss_pred Eec-----------------------------------------CCCeEEEEEccCCCccceeeccCcccCeEEEEEcCC
Q psy6859 155 SDQ-----------------------------------------DSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPI 193 (261)
Q Consensus 155 ~~~-----------------------------------------~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 193 (261)
+.. ..+.|..||+. +++.+.+++ +..++....+..+
T Consensus 411 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~-tG~~~W~~~--~~~~~~~g~~~~~ 487 (677)
T 1kb0_A 411 AQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPV-AQKAAWSVE--HVSPWNGGTLTTA 487 (677)
T ss_dssp EEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETT-TTEEEEEEE--ESSSCCCCEEEET
T ss_pred ChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCC-CCcEEeecC--CCCCCcCcceEeC
Confidence 110 12789999998 999888885 4445555667778
Q ss_pred CCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCC-CccceeeeeECCCCceEEE
Q psy6859 194 YQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK-NKTYPSGLSFSPDGNKFVT 256 (261)
Q Consensus 194 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s 256 (261)
+.+++.++.||.+++||.++ ++.+..+.. +.....-+.|.++|+.+++
T Consensus 488 g~~v~~g~~dg~l~a~D~~t---------------G~~lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 488 GNVVFQGTADGRLVAYHAAT---------------GEKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp TTEEEEECTTSEEEEEETTT---------------CCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCEEEEECCCCcEEEEECCC---------------CceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 88888899999999999954 666666653 2223344566778875443
No 233
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.27 E-value=3e-09 Score=88.39 Aligned_cols=213 Identities=9% Similarity=0.037 Sum_probs=134.2
Q ss_pred CCCeEEEEeccCCceeeeEEeecc-------------------------------ccceeEEEEeeCCCEEEEEeCCCc-
Q psy6859 22 NDGHIKFWKKQEEGIEFVKHFRSH-------------------------------LGVIHSICTNYNGTLLCTVASDKA- 69 (261)
Q Consensus 22 ~d~~i~iw~~~~~~~~~~~~~~~~-------------------------------~~~v~~~~~~~~~~~l~s~~~dg~- 69 (261)
.++.|..||..++ +.+..+... ...-..++++|+...++.+..++.
T Consensus 181 ~~g~v~a~D~~tG--~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~ 258 (689)
T 1yiq_A 181 VRGYVTAYDAETG--KEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSL 258 (689)
T ss_dssp CBCEEEEEETTTC--CEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEES
T ss_pred CCCEEEEEECCCC--cEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCc
Confidence 3789999999987 444444310 011125788888888998887764
Q ss_pred ------------------EEEEEccccceeeeeeccCc---------ceeEEEEeecCCceeeeeeecCCCCeEEEEEcC
Q psy6859 70 ------------------MKVFDVINFDMINMIKLDFT---------PLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCK 122 (261)
Q Consensus 70 ------------------v~~wd~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~ 122 (261)
|..+|..+|+.+..++...+ +.....+..++... -.++.++.+|.++++|.+
T Consensus 259 w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~-~~v~~~~~~G~l~~lD~~ 337 (689)
T 1yiq_A 259 WDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPR-KVLMQAPKNGFFYVIDRA 337 (689)
T ss_dssp SCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEE-EEEEECCTTSEEEEEETT
T ss_pred cccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEE-EEEEEECCCCeEEEEECC
Confidence 99999999999888764321 11122222334311 122345899999999999
Q ss_pred CCceeeEEeecCCc--------------------------ceE-----------EEEEEeCCCCceEEEEec--------
Q psy6859 123 GNDMINMIKLDFTP--------------------------LTV-----------ECIHYLGDAIPTAAVSDQ-------- 157 (261)
Q Consensus 123 ~~~~~~~~~~~~~~--------------------------~~~-----------~~~~~~~~~~~~~~~~~~-------- 157 (261)
+++.+........+ ..+ ..++++|+...+++.+..
T Consensus 338 tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~ 417 (689)
T 1yiq_A 338 TGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHI 417 (689)
T ss_dssp TCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECC
T ss_pred CCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeec
Confidence 99987544322100 000 125677776532221110
Q ss_pred -----------------------------------CCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcC
Q psy6859 158 -----------------------------------DSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDK 202 (261)
Q Consensus 158 -----------------------------------~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 202 (261)
.+|.|+.||+. +++.+..++ +..++..-.+...+.+++.++.
T Consensus 418 ~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~-tG~~~W~~~--~~~~~~~g~~~tagglvf~gt~ 494 (689)
T 1yiq_A 418 PEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPV-KQQAAWEVP--YVTIFNGGTLSTAGNLVFEGSA 494 (689)
T ss_dssp SSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETT-TTEEEEEEE--ESSSCCCCEEEETTTEEEEECT
T ss_pred cccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECC-CCCeEeEcc--CCCCccCccceECCCEEEEECC
Confidence 14789999999 999888885 3333444456667888999999
Q ss_pred CCeEEEeecccccccCCeeeeeecccccceeecCCCc-cceeeeeECCCCceEE
Q psy6859 203 AGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNK-TYPSGLSFSPDGNKFV 255 (261)
Q Consensus 203 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~ 255 (261)
||.++.||.+ +++.+.+++... ....-+.|..+|+..+
T Consensus 495 dg~l~a~D~~---------------tG~~lw~~~~~~~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 495 DGRVIAYAAD---------------TGEKLWEQPAASGVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp TSEEEEEETT---------------TCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CCcEEEEECC---------------CCccceeeeCCCCcccCceEEEECCEEEE
Confidence 9999999995 467776665432 2224567778887443
No 234
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.25 E-value=2.1e-08 Score=75.88 Aligned_cols=187 Identities=11% Similarity=0.024 Sum_probs=114.0
Q ss_pred CCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeec--cccceeEEEEeeCCCEEEEEeCC----CcEEEEEcc
Q psy6859 4 SPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRS--HLGVIHSICTNYNGTLLCTVASD----KAMKVFDVI 76 (261)
Q Consensus 4 ~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d----g~v~~wd~~ 76 (261)
..+.+++++| ++++++ +.+ .|.+|+..++....+..... ....++.++++|+|+++++...+ +...||.+.
T Consensus 90 ~~v~~i~~~~dg~l~v~-~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~ 167 (326)
T 2ghs_A 90 FMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA 167 (326)
T ss_dssp SCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE
T ss_pred CcceEEEEeCCCeEEEE-ECC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe
Confidence 4688999998 665554 444 48899987763332222211 12458899999999877655422 223444443
Q ss_pred ccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcC--CC-cee--eEE-eecCCcceEEEEEEeCCCCc
Q psy6859 77 NFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCK--GN-DMI--NMI-KLDFTPLTVECIHYLGDAIP 150 (261)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~--~~-~~~--~~~-~~~~~~~~~~~~~~~~~~~~ 150 (261)
+++... +...........++++++.++.. .+.++.|.+||+. ++ ... ..+ ...........+.+++++.
T Consensus 168 ~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~---~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~- 242 (326)
T 2ghs_A 168 KGKVTK-LFADISIPNSICFSPDGTTGYFV---DTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH- 242 (326)
T ss_dssp TTEEEE-EEEEESSEEEEEECTTSCEEEEE---ETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-
T ss_pred CCcEEE-eeCCCcccCCeEEcCCCCEEEEE---ECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCC-
Confidence 444332 22121223456677777755443 2567899999986 55 321 122 1222234567888999886
Q ss_pred eEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEc-CCCCEEEEEc
Q psy6859 151 TAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFN-PIYQVVVSVD 201 (261)
Q Consensus 151 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~ 201 (261)
+.++...++.|..||. +++.+..+. .+...+++++|+ |+++.|+.++
T Consensus 243 -lwva~~~~~~v~~~d~--~g~~~~~i~-~~~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 243 -IWNARWGEGAVDRYDT--DGNHIARYE-VPGKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp -EEEEEETTTEEEEECT--TCCEEEEEE-CSCSBEEEEEEESTTSCEEEEEE
T ss_pred -EEEEEeCCCEEEEECC--CCCEEEEEE-CCCCCcEEEEEecCCCCEEEEEe
Confidence 2555545688999997 456666775 556679999998 8888665444
No 235
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=99.24 E-value=2.7e-08 Score=70.83 Aligned_cols=182 Identities=7% Similarity=0.005 Sum_probs=124.1
Q ss_pred eEEEEEcCCCeEEEecCCC--eEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEE-EeCCCcEEEEEccccceee
Q psy6859 6 ITHVVVTKTDFVITASNDG--HIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCT-VASDKAMKVFDVINFDMIN 82 (261)
Q Consensus 6 v~~~~~~~~~~l~s~~~d~--~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~~~dg~v~~wd~~~~~~~~ 82 (261)
...+.|+++.++.+.+.+| .|+.+|++++ +.+..+.-. ...........++.|.. .-.++.+.++|..+.+.+.
T Consensus 23 tqGL~~~~~~LyestG~~g~S~v~~vD~~tg--kv~~~~~l~-~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ 99 (243)
T 3mbr_X 23 TEGLFYLRGHLYESTGETGRSSVRKVDLETG--RILQRAEVP-PPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRA 99 (243)
T ss_dssp EEEEEEETTEEEEEECCTTSCEEEEEETTTC--CEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred cccEEEECCEEEEECCCCCCceEEEEECCCC--CEEEEEeCC-CCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEE
Confidence 5678888876777777754 8999999987 555555422 23333333343444444 4468899999999999999
Q ss_pred eeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcc---eEEEEEEeCCCCceEEEEecCC
Q psy6859 83 MIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPL---TVECIHYLGDAIPTAAVSDQDS 159 (261)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d 159 (261)
++...... ..+..+++.++.. ..++.|.++|..+.+.+..+.....+. .+..+.+. ++. +++..-.+
T Consensus 100 ti~~~~~G---wglt~dg~~L~vS----dgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~--lyanvw~s 169 (243)
T 3mbr_X 100 RFRYPGEG---WALTSDDSHLYMS----DGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE--LLANVWLT 169 (243)
T ss_dssp EEECSSCC---CEEEECSSCEEEE----CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE--EEEEETTT
T ss_pred EEeCCCCc---eEEeeCCCEEEEE----CCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE--EEEEECCC
Confidence 99876543 2334566666555 568899999999999888887643322 33455555 342 35555567
Q ss_pred CeEEEEEccCCCccceeeccC------------cccCeEEEEEcCCCCEEEEEc
Q psy6859 160 SHVHIYDCKGNGTPLHVLDRL------------HTKPVVLIKFNPIYQVVVSVD 201 (261)
Q Consensus 160 ~~i~i~d~~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~l~~~~ 201 (261)
..|.+.|.+ +++.+..+... .....+.|+++|+++.|+..+
T Consensus 170 ~~I~vIDp~-tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 170 SRIARIDPA-SGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp TEEEEECTT-TCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred CeEEEEECC-CCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 899999999 88888777511 123568999999877665444
No 236
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.23 E-value=3.3e-09 Score=79.49 Aligned_cols=187 Identities=9% Similarity=0.036 Sum_probs=116.4
Q ss_pred CCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeE-Eeecc-ccceeEEEEeeCCCEEEE----EeC---------
Q psy6859 3 RSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVK-HFRSH-LGVIHSICTNYNGTLLCT----VAS--------- 66 (261)
Q Consensus 3 ~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~-~~~~~-~~~v~~~~~~~~~~~l~s----~~~--------- 66 (261)
...+..+++++ ++++++...++.|.+|+.+ +....+. ...+. ...++.+++.++|+++++ +..
T Consensus 85 ~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~ 163 (305)
T 3dr2_A 85 TAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPAD 163 (305)
T ss_dssp CSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCC
T ss_pred CCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccc
Confidence 34578899999 7766666666889999986 3222221 11111 134678999999998886 332
Q ss_pred ----CCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCC-----CCeEEEEEcCCCceeeEEe--ecCC
Q psy6859 67 ----DKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD-----SSRVHIYDCKGNDMINMIK--LDFT 135 (261)
Q Consensus 67 ----dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-----d~~i~i~d~~~~~~~~~~~--~~~~ 135 (261)
.+.|..+|..+++..... .......+.++++++.++.. .+. .+.|..|++.... +.... ....
T Consensus 164 ~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~---~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~ 237 (305)
T 3dr2_A 164 PELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVS---QTPEQGHGSVEITAFAWRDGA-LHDRRHFASVP 237 (305)
T ss_dssp CSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEE---ECCC---CCCEEEEEEEETTE-EEEEEEEECCS
T ss_pred cccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEE---ecCCcCCCCCEEEEEEecCCC-ccCCeEEEECC
Confidence 245777777666544332 22233456778888766554 122 3789999987654 21111 1112
Q ss_pred cceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCC
Q psy6859 136 PLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAG 204 (261)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 204 (261)
......+.+++++. +..+.. +.|.+|+. .++.+..+. ... .+..++|+|+++.|+.++.++
T Consensus 238 ~~~pdgi~~d~~G~---lwv~~~-~gv~~~~~--~g~~~~~~~-~~~-~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 238 DGLPDGFCVDRGGW---LWSSSG-TGVCVFDS--DGQLLGHIP-TPG-TASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp SSCCCSEEECTTSC---EEECCS-SEEEEECT--TSCEEEEEE-CSS-CCCEEEECTTSCEEEEEETTE
T ss_pred CCCCCeEEECCCCC---EEEecC-CcEEEECC--CCCEEEEEE-CCC-ceeEEEEeCCCCEEEEEcCCe
Confidence 22345678888887 333343 45999997 466777775 333 588999999998887777664
No 237
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.20 E-value=2.2e-07 Score=68.10 Aligned_cols=222 Identities=9% Similarity=-0.019 Sum_probs=131.2
Q ss_pred eEEEEEcC-CC-eEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEE-eCCCcEEEEEccccceee
Q psy6859 6 ITHVVVTK-TD-FVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTV-ASDKAMKVFDVINFDMIN 82 (261)
Q Consensus 6 v~~~~~~~-~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~v~~wd~~~~~~~~ 82 (261)
+..+++++ ++ ++++-..++.|..++.+.. .....+.........+++++++..|+.+ ...+.|.++++.......
T Consensus 38 ~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~--~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~ 115 (267)
T 1npe_A 38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGG--EPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV 115 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEESSSC--CCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred EEEEEEecCCCEEEEEECCCCEEEEEecCCC--CcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence 45888988 54 4555566789999998764 2222222222456899999875555544 456789999985432222
Q ss_pred eeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeE
Q psy6859 83 MIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHV 162 (261)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 162 (261)
...........+.+.+++..++... .+...+.|..+++.... ...+.. ........+++++++.. ++++....+.|
T Consensus 116 ~~~~~~~~P~~i~vd~~~g~lyv~~-~~~~~~~I~~~~~dg~~-~~~~~~-~~~~~P~gia~d~~~~~-lyv~d~~~~~I 191 (267)
T 1npe_A 116 LFDTGLVNPRGIVTDPVRGNLYWTD-WNRDNPKIETSHMDGTN-RRILAQ-DNLGLPNGLTFDAFSSQ-LCWVDAGTHRA 191 (267)
T ss_dssp EECSSCSSEEEEEEETTTTEEEEEE-CCSSSCEEEEEETTSCC-CEEEEC-TTCSCEEEEEEETTTTE-EEEEETTTTEE
T ss_pred EEECCCCCccEEEEeeCCCEEEEEE-CCCCCcEEEEEecCCCC-cEEEEE-CCCCCCcEEEEcCCCCE-EEEEECCCCEE
Confidence 2222212234556776556555441 11114688888886543 222221 12235688999998764 46666778899
Q ss_pred EEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCc-cc
Q psy6859 163 HIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNK-TY 241 (261)
Q Consensus 163 ~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 241 (261)
..+|.. .......+. . ......++.. .+.++++....+.|..+|..+ ++.+..+.... ..
T Consensus 192 ~~~~~~-g~~~~~~~~-~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~---------------g~~~~~i~~g~~~~ 252 (267)
T 1npe_A 192 ECLNPA-QPGRRKVLE-G-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAI---------------SKEMDTFHPHKQTR 252 (267)
T ss_dssp EEEETT-EEEEEEEEE-C-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTT---------------TEEEEEECCSSCCC
T ss_pred EEEecC-CCceEEEec-C-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCC---------------CCceEEEccccccc
Confidence 999986 433333332 2 2334567664 344444555668899999743 45555554322 34
Q ss_pred eeeeeECCCCc
Q psy6859 242 PSGLSFSPDGN 252 (261)
Q Consensus 242 v~~~~~s~~~~ 252 (261)
...+++.|++.
T Consensus 253 p~gi~~~~~~~ 263 (267)
T 1npe_A 253 LYGITIALSQC 263 (267)
T ss_dssp CCCEEEECSCC
T ss_pred cceeeecCccC
Confidence 78889988864
No 238
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.19 E-value=4.7e-12 Score=97.50 Aligned_cols=143 Identities=13% Similarity=0.076 Sum_probs=74.5
Q ss_pred CCCEEEEEeCCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCc
Q psy6859 57 NGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTP 136 (261)
Q Consensus 57 ~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~ 136 (261)
++..+++++.|+.|+.||..+|+.+..+.. . +.....+..++..++. ++.|+.|..||.++++.+..+.....
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~-~~~s~p~~~~g~~~v~----~s~dg~l~a~d~~tG~~~w~~~~~~~- 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-D-PVLQVPTHVEEPAFLP----DPNDGSLYTLGSKNNEGLTKLPFTIP- 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-C-CSCCCC-----CCEEE----CTTTCCEEEC-----CCSEECSCCHH-
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-C-CceecceEcCCCEEEE----eCCCCEEEEEECCCCceeeeeeccCc-
Confidence 466899999999999999999999888775 2 2222222233433333 37899999999998877655443211
Q ss_pred ceEE-EEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccccc
Q psy6859 137 LTVE-CIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQE 215 (261)
Q Consensus 137 ~~~~-~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 215 (261)
..+. ......++. +++++.++.++.||.. +++.+..+. .+. ...++|++..|++++.|+.|+.||.++++
T Consensus 81 ~~~~~sp~~~~~~~---v~~g~~dg~v~a~D~~-tG~~~w~~~-~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~ 151 (369)
T 2hz6_A 81 ELVQASPCRSSDGI---LYMGKKQDIWYVIDLL-TGEKQQTLS-SAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRE 151 (369)
T ss_dssp HHHTTCSCC--------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSSS
T ss_pred cccccCceEecCCE---EEEEeCCCEEEEEECC-CCcEEEEec-CCC----cccccccCCEEEEEecCCEEEEEECCCCC
Confidence 0000 001112222 5667778999999999 899888875 332 24566788889999999999999997653
No 239
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.19 E-value=1.1e-08 Score=84.76 Aligned_cols=157 Identities=8% Similarity=-0.071 Sum_probs=97.8
Q ss_pred CCeEEEecCCCeEEEEeccCCceeeeEEeecc-c----cceeEEEEeeCCCEEEEEeC------CCcEEEEEccccceee
Q psy6859 14 TDFVITASNDGHIKFWKKQEEGIEFVKHFRSH-L----GVIHSICTNYNGTLLCTVAS------DKAMKVFDVINFDMIN 82 (261)
Q Consensus 14 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~-~----~~v~~~~~~~~~~~l~s~~~------dg~v~~wd~~~~~~~~ 82 (261)
+..|+.++.|+.|..+|..++ +.+..+..+ . ..+..--...++ .++.++. ++.|+.+|..+|+.+.
T Consensus 128 ~~~v~v~~~dg~l~alD~~tG--~~~W~~~~~~~~~~~~~~~~~p~v~~~-~v~v~~~~~~~~~~g~v~a~D~~tG~~~W 204 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAATG--KEVWHQNTFEGQKGSLTITGAPRVFKG-KVIIGNGGAEYGVRGYITAYDAETGERKW 204 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTC--CEEEEEETTTTCCSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred CCEEEEEcCCCEEEEEECCCC--CEEeeecCCcCcCcCcccccCcEEECC-EEEEEecccccCCCCEEEEEECCCCcEEE
Confidence 457888899999999999887 556555543 1 122221111244 5555543 6899999999999888
Q ss_pred eeeccCcce--------------------------------eEEEEeecCCceeeeeeecCCC-----------------
Q psy6859 83 MIKLDFTPL--------------------------------TVECIHYLGDAIPTAAVSDQDS----------------- 113 (261)
Q Consensus 83 ~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~s~~~d----------------- 113 (261)
.+....... ....+.+.++.++.. +.+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~----~~~~~~w~~~~~~~~~gd~~ 280 (677)
T 1kb0_A 205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVG----TGNGSPWSHKVRSPKGGDNL 280 (677)
T ss_dssp EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEE----CCCEESSCHHHHSTTCCCCT
T ss_pred EeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEE----CCCCccccCCCCCccCCCCe
Confidence 776422110 123444455555443 333
Q ss_pred --CeEEEEEcCCCceeeEEeecCCc-------ceEEEEEEeCCCC-ceEEEEecCCCeEEEEEccCCCccceeec
Q psy6859 114 --SRVHIYDCKGNDMINMIKLDFTP-------LTVECIHYLGDAI-PTAAVSDQDSSHVHIYDCKGNGTPLHVLD 178 (261)
Q Consensus 114 --~~i~i~d~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~~ 178 (261)
+.|..+|.++++.+-.++...+. .....+....++. ..+++.++.+|.++++|.. +++++..++
T Consensus 281 ~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~-tG~~l~~~~ 354 (677)
T 1kb0_A 281 YLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRT-NGKFISAKN 354 (677)
T ss_dssp TTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETT-TCCEEEEEE
T ss_pred eeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECC-CCCEecccc
Confidence 25999999999988777653221 1122223333442 1237788899999999998 888877664
No 240
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.18 E-value=8.9e-09 Score=77.80 Aligned_cols=209 Identities=12% Similarity=0.019 Sum_probs=132.6
Q ss_pred CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcceeE
Q psy6859 14 TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTV 93 (261)
Q Consensus 14 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~ 93 (261)
+..+..++.++.+..++.. + +....+..+...+.++...+++. ++.++.++.+..+|.. ++....+.........
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g--~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~ 181 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-G--TEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSA 181 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-S--CEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSC
T ss_pred CCEEEEEecCCEEEEEcCC-C--CEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceee
Confidence 4567778888999999987 4 34444444455567777777775 5567788999999988 7777666654443333
Q ss_pred EEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCcc
Q psy6859 94 ECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTP 173 (261)
Q Consensus 94 ~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~ 173 (261)
.....++ .++.. + +.+..+| .+++.+..... ....+.++...+++. +..++.++.+..+|. +++.
T Consensus 182 ~~~d~~g-~l~v~----t--~~l~~~d-~~g~~~~~~~~--~~~~~~~~~~~~~g~---l~v~t~~~gl~~~~~--~g~~ 246 (330)
T 3hxj_A 182 ASIGKDG-TIYFG----S--DKVYAIN-PDGTEKWNFYA--GYWTVTRPAISEDGT---IYVTSLDGHLYAINP--DGTE 246 (330)
T ss_dssp CEECTTC-CEEEE----S--SSEEEEC-TTSCEEEEECC--SSCCCSCCEECTTSC---EEEEETTTEEEEECT--TSCE
T ss_pred eEEcCCC-EEEEE----e--CEEEEEC-CCCcEEEEEcc--CCcceeceEECCCCe---EEEEcCCCeEEEECC--CCCE
Confidence 3333333 34443 4 8899999 66665555443 223466777777765 555666788888874 5566
Q ss_pred ceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCce
Q psy6859 174 LHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNK 253 (261)
Q Consensus 174 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 253 (261)
+..+. .....+..+.+.+++. |..++.+|.|..+|.. ++.+..+......+.++...++|++
T Consensus 247 ~~~~~-~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~~----------------g~~~~~~~~~~~~~~~~~~d~~g~l 308 (330)
T 3hxj_A 247 KWRFK-TGKRIESSPVIGNTDT-IYFGSYDGHLYAINPD----------------GTEKWNFETGSWIIATPVIDENGTI 308 (330)
T ss_dssp EEEEE-CSSCCCSCCEECTTSC-EEEECTTCEEEEECTT----------------SCEEEEEECSSCCCSCCEECTTCCE
T ss_pred eEEee-CCCCccccceEcCCCe-EEEecCCCCEEEECCC----------------CcEEEEEEcCCccccceEEcCCCEE
Confidence 66664 3333344556666664 6667778889999852 2333333333456777888788775
Q ss_pred EEEeecCC
Q psy6859 254 FVTISMDR 261 (261)
Q Consensus 254 l~s~~~Dg 261 (261)
.+ ++.+|
T Consensus 309 ~~-gt~~G 315 (330)
T 3hxj_A 309 YF-GTRNG 315 (330)
T ss_dssp EE-ECTTS
T ss_pred EE-EcCCC
Confidence 54 55443
No 241
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.18 E-value=1.1e-08 Score=78.08 Aligned_cols=201 Identities=14% Similarity=0.030 Sum_probs=115.5
Q ss_pred cceeEEEEeeCCCEEEEEeC--CCcEEEEEccccceeeeee-------ccCcceeEEEEeecCCceeeeeeecC---CCC
Q psy6859 47 GVIHSICTNYNGTLLCTVAS--DKAMKVFDVINFDMINMIK-------LDFTPLTVECIHYLGDAIPTAAVSDQ---DSS 114 (261)
Q Consensus 47 ~~v~~~~~~~~~~~l~s~~~--dg~v~~wd~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~s~~---~d~ 114 (261)
..+..++++++|+.+++... ++.++||.+.+++.. .+. .+......+.+.+++. ++.+- ++. .+.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~D-~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGI-VWMLD-NGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSE-EEEEE-CHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCc-EEEEc-CCCCcCCCC
Confidence 57899999999999888642 343566666555432 221 0112334455555543 44430 110 157
Q ss_pred eEEEEEcCCCceeeEEeecCC----cceEEEEEEeCCCCceEEEEec---CCCeEEEEEccCCCccceeeccCc------
Q psy6859 115 RVHIYDCKGNDMINMIKLDFT----PLTVECIHYLGDAIPTAAVSDQ---DSSHVHIYDCKGNGTPLHVLDRLH------ 181 (261)
Q Consensus 115 ~i~i~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~------ 181 (261)
.|.+||+.+++.+..+..... ......+++++++.. ++++.. .++.|.+||+. +++..+.+. .|
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~-~g~~~r~~~-~~~~~~~~ 170 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQ-TGLAARVLQ-GYPGIAPE 170 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETT-TCCEEEECT-TCTTTSCC
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECC-CCCEEEEec-CCCccccc
Confidence 899999999987777765311 124578889976443 356655 67899999997 665544442 21
Q ss_pred -----------------------ccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeeccccccee--ecC
Q psy6859 182 -----------------------TKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLF--EFA 236 (261)
Q Consensus 182 -----------------------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~ 236 (261)
...+..|+|+|+++.|+.+..++. ++|.+.......... ...+... ...
T Consensus 171 ~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~~~-----~~~~~~~~~~~~ 244 (343)
T 2qe8_A 171 DIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNLQL-----TDAELGSKIERY 244 (343)
T ss_dssp SCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCTTC-----CHHHHHTTCEEE
T ss_pred ccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCCCC-----ChhhhhcceEec
Confidence 123688999999998887776653 445443210000000 0000000 111
Q ss_pred CCccceeeeeECCCCceEEEeec
Q psy6859 237 KNKTYPSGLSFSPDGNKFVTISM 259 (261)
Q Consensus 237 ~~~~~v~~~~~s~~~~~l~s~~~ 259 (261)
++......++++++|+++++...
T Consensus 245 g~~g~pdgia~d~~G~l~va~~~ 267 (343)
T 2qe8_A 245 SEKPICDGISIDKDHNIYVGDLA 267 (343)
T ss_dssp EECCSCSCEEECTTCCEEEEEGG
T ss_pred ccCCCCceEEECCCCCEEEEccC
Confidence 23345677889999887776543
No 242
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=99.17 E-value=4.1e-07 Score=68.12 Aligned_cols=226 Identities=10% Similarity=0.004 Sum_probs=131.2
Q ss_pred CeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCC--cEEEEEcccccee
Q psy6859 5 PITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDK--AMKVFDVINFDMI 81 (261)
Q Consensus 5 ~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg--~v~~wd~~~~~~~ 81 (261)
....++|++ ++++++-..++.|..|+.+.. ....+. ....+..+++.++++++++..... .|..+|..+++..
T Consensus 33 ~pegia~~~~g~lyv~d~~~~~I~~~d~~g~---~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~ 108 (306)
T 2p4o_A 33 FLENLASAPDGTIFVTNHEVGEIVSITPDGN---QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE 108 (306)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCC---EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CcceEEECCCCCEEEEeCCCCeEEEECCCCc---eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEE
Confidence 456789998 777777778899999987753 222222 234678999999998666543322 4666777777654
Q ss_pred eeeeccCc-ceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCce-eeEEe-------ecCCcceEEEEEEeCCCCceE
Q psy6859 82 NMIKLDFT-PLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDM-INMIK-------LDFTPLTVECIHYLGDAIPTA 152 (261)
Q Consensus 82 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 152 (261)
........ ......... +..++.. ...++.|..+|..+++. +.... ....-.....+ ++++.. +
T Consensus 109 ~~~~~~~~~~~~g~~~~~-~~~~~v~---d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~-l 181 (306)
T 2p4o_A 109 TLLTLPDAIFLNGITPLS-DTQYLTA---DSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF-L 181 (306)
T ss_dssp EEEECTTCSCEEEEEESS-SSEEEEE---ETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE-E
T ss_pred EEEeCCCccccCcccccC-CCcEEEE---ECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE-E
Confidence 33322111 111122222 2222222 24578898999875421 11000 00011123445 666653 4
Q ss_pred EEEecCCCeEEEEEccCCCcc--ceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeeccccc
Q psy6859 153 AVSDQDSSHVHIYDCKGNGTP--LHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDT 230 (261)
Q Consensus 153 ~~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 230 (261)
+++....+.|..||+...++. ...+. .......++++++|++.++....+.|.++|.. ++
T Consensus 182 yv~d~~~~~I~~~~~~~~g~~~~~~~~~--~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~----------------G~ 243 (306)
T 2p4o_A 182 YVSNTEKMLLLRIPVDSTDKPGEPEIFV--EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD----------------RS 243 (306)
T ss_dssp EEEETTTTEEEEEEBCTTSCBCCCEEEE--ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT----------------CC
T ss_pred EEEeCCCCEEEEEEeCCCCCCCccEEEe--ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC----------------CC
Confidence 677777899999998722322 22221 11345678999999877776677889999863 22
Q ss_pred c--eeecCCCccceeeeeEC---CCCceEEEeec
Q psy6859 231 D--LFEFAKNKTYPSGLSFS---PDGNKFVTISM 259 (261)
Q Consensus 231 ~--~~~~~~~~~~v~~~~~s---~~~~~l~s~~~ 259 (261)
. +..+......+++++|. |+++.|+.++.
T Consensus 244 ~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 244 TTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp EEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred EEEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence 2 22222223567899998 89877766543
No 243
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.12 E-value=1.2e-07 Score=73.37 Aligned_cols=198 Identities=10% Similarity=0.052 Sum_probs=118.6
Q ss_pred eCCCEEEEE-eCCCcEEEEEcccc----ceeeeee-------ccCcceeEEEEeecCCceeeeeee--cCCCCeEEEEEc
Q psy6859 56 YNGTLLCTV-ASDKAMKVFDVINF----DMINMIK-------LDFTPLTVECIHYLGDAIPTAAVS--DQDSSRVHIYDC 121 (261)
Q Consensus 56 ~~~~~l~s~-~~dg~v~~wd~~~~----~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~s--~~~d~~i~i~d~ 121 (261)
++.++|+.. ..++.|.++|+.+. +..+.++ .....-.-....+++ ..++..-. |...+.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 777776654 46789999998755 5555552 111111222334555 32222111 123478999999
Q ss_pred CCCceeeEEeecCCc-ceEEEEEEeCCCCceEEEEec-------------------CCCeEEEEEccCCCccceeeccC-
Q psy6859 122 KGNDMINMIKLDFTP-LTVECIHYLGDAIPTAAVSDQ-------------------DSSHVHIYDCKGNGTPLHVLDRL- 180 (261)
Q Consensus 122 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-------------------~d~~i~i~d~~~~~~~~~~~~~~- 180 (261)
++.+.+..+.....+ ..-..+.|+|+... +++.. ...+|.+||+. +++.+.++..+
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~--mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~-~~k~~~tI~vg~ 248 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEV--LVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLR-KRKRIHSLTLGE 248 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTE--EEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETT-TTEEEEEEESCT
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCE--EEEccCcCccccccccchhhhhhccCCEEEEEECC-CCcEeeEEecCC
Confidence 999999888754333 22345778999984 44442 37899999998 78888888622
Q ss_pred cccCeEEEEE--cCCCCEEEEEc------CCCeEEEeecccccccCCeeeeeecccccceeec-------CCCccceeee
Q psy6859 181 HTKPVVLIKF--NPIYQVVVSVD------KAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEF-------AKNKTYPSGL 245 (261)
Q Consensus 181 ~~~~v~~~~~--~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~v~~~ 245 (261)
.......+.| +|+++++++++ .+++|.+|..+.+.+..... .+..+.+....+ .+-...+..+
T Consensus 249 ~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~v--Idi~~~~v~~~lp~~~~~f~~~~~~pa~I 326 (462)
T 2ece_A 249 ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKV--IEIPAEPLEGNLPEILKPFKAVPPLVTDI 326 (462)
T ss_dssp TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEE--EEECCEECCSSCCGGGGGGTEECCCCCCE
T ss_pred CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEE--EeCCCccccccccccccccccCCCceeEE
Confidence 2234556656 99999887666 46688887765432211111 111111111111 1112457889
Q ss_pred eECCCCceEEEeec
Q psy6859 246 SFSPDGNKFVTISM 259 (261)
Q Consensus 246 ~~s~~~~~l~s~~~ 259 (261)
.+||||++|.++..
T Consensus 327 ~lS~DGrfLYVSnr 340 (462)
T 2ece_A 327 DISLDDKFLYLSLW 340 (462)
T ss_dssp EECTTSCEEEEEET
T ss_pred EECCCCCEEEEEeC
Confidence 99999999988754
No 244
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.09 E-value=4.5e-08 Score=81.42 Aligned_cols=156 Identities=8% Similarity=-0.046 Sum_probs=93.0
Q ss_pred CCeEEEecCCCeEEEEeccCCceeeeEEeecc--c---cceeEEEEeeCCCEEEEEe------CCCcEEEEEccccceee
Q psy6859 14 TDFVITASNDGHIKFWKKQEEGIEFVKHFRSH--L---GVIHSICTNYNGTLLCTVA------SDKAMKVFDVINFDMIN 82 (261)
Q Consensus 14 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~--~---~~v~~~~~~~~~~~l~s~~------~dg~v~~wd~~~~~~~~ 82 (261)
+..++.++.|+.|..+|..++ +.+..+... . ..+.+--...++. ++.++ .++.|+.||..+|+.+.
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG--~~~W~~~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W 197 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTG--QRAWSVDTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAW 197 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTC--CEEEEEECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred CCEEEEEccCCEEEEEECCCC--CEeeeecCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEE
Confidence 457888899999999999887 555444321 1 1111111112454 44443 36899999999999887
Q ss_pred eeeccC-cc------------------------------eeEEEEeecCCceeeeeeecCCCC-----------------
Q psy6859 83 MIKLDF-TP------------------------------LTVECIHYLGDAIPTAAVSDQDSS----------------- 114 (261)
Q Consensus 83 ~~~~~~-~~------------------------------~~~~~~~~~~~~~~~~~~s~~~d~----------------- 114 (261)
.+.... .+ .....+.+..+.++.. +.++
T Consensus 198 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~----~~~g~~w~~~~~~~~~gd~~y 273 (689)
T 1yiq_A 198 RFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIG----VGNGSLWDPKWRSQAKGDNLF 273 (689)
T ss_dssp EEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEE----CCCEESSCHHHHHTTCSCCTT
T ss_pred EecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEe----CCCCCccccCCCCCCCCCcee
Confidence 765211 00 0123444445555443 4443
Q ss_pred --eEEEEEcCCCceeeEEeecCCc-------ceEEEEEEeCCCC-ceEEEEecCCCeEEEEEccCCCccceee
Q psy6859 115 --RVHIYDCKGNDMINMIKLDFTP-------LTVECIHYLGDAI-PTAAVSDQDSSHVHIYDCKGNGTPLHVL 177 (261)
Q Consensus 115 --~i~i~d~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~ 177 (261)
.|..+|.++++.+-.++...+. ..........++. ..+++.++.+|.++++|.+ +++++...
T Consensus 274 ~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~-tG~~l~~~ 345 (689)
T 1yiq_A 274 LSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRA-TGELLSAK 345 (689)
T ss_dssp TTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETT-TCCEEEEE
T ss_pred eeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECC-CCCEeccc
Confidence 4999999999988777653211 1111112222332 1247788899999999998 88887443
No 245
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.07 E-value=2.3e-07 Score=71.57 Aligned_cols=181 Identities=11% Similarity=0.048 Sum_probs=113.0
Q ss_pred CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcce--
Q psy6859 14 TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPL-- 91 (261)
Q Consensus 14 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~-- 91 (261)
+..++.++.++.|..+|.+++ +.+............... .+ ..++.++.++.|..+|..+++.+..........
T Consensus 103 ~~~v~v~~~~g~l~a~d~~tG--~~~W~~~~~~~~~~~p~~-~~-~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~ 178 (376)
T 3q7m_A 103 GGHVYIGSEKAQVYALNTSDG--TVAWQTKVAGEALSRPVV-SD-GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSL 178 (376)
T ss_dssp TTEEEEEETTSEEEEEETTTC--CEEEEEECSSCCCSCCEE-ET-TEEEEECTTSEEEEEETTTCCEEEEEECCC-----
T ss_pred CCEEEEEcCCCEEEEEECCCC--CEEEEEeCCCceEcCCEE-EC-CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceee
Confidence 567788888999999999887 444444433221122222 23 478888899999999999999888776433211
Q ss_pred ---eEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcce--------E-EEEEEeCCCCceEEEEecCC
Q psy6859 92 ---TVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLT--------V-ECIHYLGDAIPTAAVSDQDS 159 (261)
Q Consensus 92 ---~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~~d 159 (261)
....+ .+..++.. +.++.+..+|.++++.+........... + ...... ++. ++.++.+
T Consensus 179 ~~~~~~~~--~~~~v~~g----~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~---v~~~~~~ 248 (376)
T 3q7m_A 179 RGESAPTT--AFGAAVVG----GDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV-NGV---VFALAYN 248 (376)
T ss_dssp CCCCCCEE--ETTEEEEC----CTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEE-TTE---EEEECTT
T ss_pred cCCCCcEE--ECCEEEEE----cCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEE-CCE---EEEEecC
Confidence 11111 13344443 6789999999999988766654321100 0 001111 221 5566678
Q ss_pred CeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccc
Q psy6859 160 SHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQ 214 (261)
Q Consensus 160 ~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 214 (261)
+.+..+|.+ +++.+.... . .....+.. ++..|+.++.++.|..+|..++
T Consensus 249 g~l~~~d~~-tG~~~w~~~-~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG 297 (376)
T 3q7m_A 249 GNLTALDLR-SGQIMWKRE-L--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGG 297 (376)
T ss_dssp SCEEEEETT-TCCEEEEEC-C--CCEEEEEE--ETTEEEEEETTCCEEEEETTTC
T ss_pred cEEEEEECC-CCcEEeecc-C--CCCCCceE--ECCEEEEEcCCCeEEEEECCCC
Confidence 999999998 888877664 2 22344443 3556777778899999998664
No 246
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.05 E-value=1.6e-07 Score=72.45 Aligned_cols=180 Identities=9% Similarity=0.067 Sum_probs=111.9
Q ss_pred CCeEEEecCCCeEEEEeccCCceeeeEEeeccccce-----eEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccC
Q psy6859 14 TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVI-----HSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDF 88 (261)
Q Consensus 14 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~ 88 (261)
+..++.++.++.|..+|..++ +.+..+....... ...... +..++.+..++.+..+|..+++.+.......
T Consensus 143 ~~~v~v~~~~g~l~~~d~~tG--~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~ 218 (376)
T 3q7m_A 143 DGLVLIHTSNGQLQALNEADG--AVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQ 218 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTC--CEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC
T ss_pred CCEEEEEcCCCeEEEEECCCC--cEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEeccc
Confidence 456778888999999999877 4444443221111 112222 3467888889999999999998887765432
Q ss_pred ccee----------EEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecC
Q psy6859 89 TPLT----------VECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD 158 (261)
Q Consensus 89 ~~~~----------~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (261)
.... .... ..+..++.. +.++.+..+|.++++.+...... ....+....+. +..++.
T Consensus 219 ~~~~~~~~~~~~~~~~p~-~~~~~v~~~----~~~g~l~~~d~~tG~~~w~~~~~----~~~~~~~~~~~----l~~~~~ 285 (376)
T 3q7m_A 219 ATGSTEIDRLSDVDTTPV-VVNGVVFAL----AYNGNLTALDLRSGQIMWKRELG----SVNDFIVDGNR----IYLVDQ 285 (376)
T ss_dssp -----------CCCCCCE-EETTEEEEE----CTTSCEEEEETTTCCEEEEECCC----CEEEEEEETTE----EEEEET
T ss_pred CCCCcccccccccCCCcE-EECCEEEEE----ecCcEEEEEECCCCcEEeeccCC----CCCCceEECCE----EEEEcC
Confidence 1100 0001 123444444 67899999999999877655432 22334444332 555667
Q ss_pred CCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859 159 SSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK 213 (261)
Q Consensus 159 d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 213 (261)
++.+..+|.. +++.+..........+..... .+..|+.++.+|.|..+|..+
T Consensus 286 ~g~l~~~d~~-tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~t 337 (376)
T 3q7m_A 286 NDRVMALTID-GGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVED 337 (376)
T ss_dssp TCCEEEEETT-TCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTT
T ss_pred CCeEEEEECC-CCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCC
Confidence 8999999998 888776664111222222233 245788888899999999855
No 247
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.03 E-value=5.1e-09 Score=79.15 Aligned_cols=175 Identities=7% Similarity=-0.051 Sum_probs=108.2
Q ss_pred EcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcc
Q psy6859 11 VTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTP 90 (261)
Q Consensus 11 ~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~ 90 (261)
+..+..+..++.++.|..|| .++ +....+......+.++...+++. +..++.+ +..+|. +++.+..+......
T Consensus 27 ~d~~g~l~v~t~~~~l~~~d-~~g--~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~ 99 (330)
T 3hxj_A 27 LAKNGTIYLGSSNKNLYAIN-TDG--SVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAI 99 (330)
T ss_dssp ECTTSCEECSSTTTTTEEEC-TTS--CEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC----
T ss_pred EccCCeEEEEcCCCEEEEEC-CCC--cEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCc
Confidence 33444677788889999999 665 44444444444566777766664 5555544 888886 66655554433222
Q ss_pred eeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCC
Q psy6859 91 LTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGN 170 (261)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~ 170 (261)
.....+. +..++.. +.++.+..+|.. ++........ ...+.++...+++. +..++.++.|..+|..
T Consensus 100 ~~~~~~~--~~~l~v~----t~~~~l~~~d~~-g~~~~~~~~~--~~~~~~~~~~~~g~---l~vgt~~~~l~~~d~~-- 165 (330)
T 3hxj_A 100 VSDFTIF--EDILYVT----SMDGHLYAINTD-GTEKWRFKTK--KAIYATPIVSEDGT---IYVGSNDNYLYAINPD-- 165 (330)
T ss_dssp -CCEEEE--TTEEEEE----CTTSEEEEECTT-SCEEEEEECS--SCCCSCCEECTTSC---EEEECTTSEEEEECTT--
T ss_pred ccCceEE--CCEEEEE----ecCCEEEEEcCC-CCEEEEEcCC--CceeeeeEEcCCCE---EEEEcCCCEEEEECCC--
Confidence 2222222 4455554 678999999988 6655555432 22344555666665 5566778999999985
Q ss_pred CccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEee
Q psy6859 171 GTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWS 210 (261)
Q Consensus 171 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 210 (261)
++.+..+. .....+.++...+++.+.+. + +.|..+|
T Consensus 166 g~~~~~~~-~~~~~~~~~~~d~~g~l~v~-t--~~l~~~d 201 (330)
T 3hxj_A 166 GTEKWRFK-TNDAITSAASIGKDGTIYFG-S--DKVYAIN 201 (330)
T ss_dssp SCEEEEEE-CSSCCCSCCEECTTCCEEEE-S--SSEEEEC
T ss_pred CCEeEEEe-cCCCceeeeEEcCCCEEEEE-e--CEEEEEC
Confidence 55555554 44556677788788875544 3 6788888
No 248
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.99 E-value=2.1e-06 Score=64.66 Aligned_cols=197 Identities=16% Similarity=0.041 Sum_probs=112.8
Q ss_pred eEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEee-----------------ccccceeEEEEee-CCCEEEEEeC
Q psy6859 6 ITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFR-----------------SHLGVIHSICTNY-NGTLLCTVAS 66 (261)
Q Consensus 6 v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~-----------------~~~~~v~~~~~~~-~~~~l~s~~~ 66 (261)
..++++.+ +++++++..++.|..|+..+.......... .....+..+++.+ +++ |+.+..
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d~ 99 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVDC 99 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEET
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEEC
Confidence 45678888 777888888999999988764222211100 0113468899997 564 555555
Q ss_pred CCcEEEEEccccceeeeeec--c---CcceeEEEEee-cCCceeeeee-------------ecCCCCeEEEEEcCCCcee
Q psy6859 67 DKAMKVFDVINFDMINMIKL--D---FTPLTVECIHY-LGDAIPTAAV-------------SDQDSSRVHIYDCKGNDMI 127 (261)
Q Consensus 67 dg~v~~wd~~~~~~~~~~~~--~---~~~~~~~~~~~-~~~~~~~~~~-------------s~~~d~~i~i~d~~~~~~~ 127 (261)
.+.+..+|..+++. ..+.. . ......+.+.+ ++...++-.. .+..++.|..+|..+++..
T Consensus 100 ~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 178 (322)
T 2fp8_A 100 YYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT 178 (322)
T ss_dssp TTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred CCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence 55688888765532 22210 1 11123445555 5543322100 0122467888888766543
Q ss_pred eEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCc--cceeeccCcccCeEEEEEcCCCCEEEEEcC---
Q psy6859 128 NMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGT--PLHVLDRLHTKPVVLIKFNPIYQVVVSVDK--- 202 (261)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--- 202 (261)
....... ....+++++++.. ++++....+.|..|++. ... ....+. .... ...++++++|++.++...
T Consensus 179 ~~~~~~~---~p~gia~~~dg~~-lyv~d~~~~~I~~~~~~-~~~~~~~~~~~-~~~g-P~gi~~d~~G~l~va~~~~~~ 251 (322)
T 2fp8_A 179 LLLKELH---VPGGAEVSADSSF-VLVAEFLSHQIVKYWLE-GPKKGTAEVLV-KIPN-PGNIKRNADGHFWVSSSEELD 251 (322)
T ss_dssp EEEEEES---CCCEEEECTTSSE-EEEEEGGGTEEEEEESS-STTTTCEEEEE-ECSS-EEEEEECTTSCEEEEEEEETT
T ss_pred EeccCCc---cCcceEECCCCCE-EEEEeCCCCeEEEEECC-CCcCCccceEE-eCCC-CCCeEECCCCCEEEEecCccc
Confidence 3222211 2356889999874 35565667899999986 321 112221 1123 788999999986555443
Q ss_pred -------CCeEEEeec
Q psy6859 203 -------AGILEYWSG 211 (261)
Q Consensus 203 -------dg~i~iwd~ 211 (261)
.+.|..+|.
T Consensus 252 ~~~~~~~~~~v~~~d~ 267 (322)
T 2fp8_A 252 GNMHGRVDPKGIKFDE 267 (322)
T ss_dssp SSTTSCEEEEEEEECT
T ss_pred ccccCCCccEEEEECC
Confidence 456777775
No 249
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.93 E-value=1.5e-07 Score=75.27 Aligned_cols=196 Identities=14% Similarity=0.079 Sum_probs=131.4
Q ss_pred CeEEEEE-c-C-CCeEEEec------------------CCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEE
Q psy6859 5 PITHVVV-T-K-TDFVITAS------------------NDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCT 63 (261)
Q Consensus 5 ~v~~~~~-~-~-~~~l~s~~------------------~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 63 (261)
....+++ + | ++++++++ .++.+.+.|.++. +...++.--. ....++++|+|+++++
T Consensus 135 ~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~--~v~~qI~Vgg-~pd~~~~spdGk~~~v 211 (595)
T 1fwx_A 135 GIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKW--EVAWQVLVSG-NLDNCDADYEGKWAFS 211 (595)
T ss_dssp SEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTT--EEEEEEEESS-CCCCEEECSSSSEEEE
T ss_pred CCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCC--eEEEEEEeCC-CccceEECCCCCEEEE
Confidence 4567777 4 7 77777773 3567899999886 6666665322 4577889999999998
Q ss_pred EeCCC--------------------------------------cEEEEEccc--cce-eeeeeccCcceeEEEEeecCCc
Q psy6859 64 VASDK--------------------------------------AMKVFDVIN--FDM-INMIKLDFTPLTVECIHYLGDA 102 (261)
Q Consensus 64 ~~~dg--------------------------------------~v~~wd~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~ 102 (261)
++.+. .|.+.|..+ ++. +..+..... ...+.++|++++
T Consensus 212 t~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~-PhGv~~sPDGk~ 290 (595)
T 1fwx_A 212 TSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANN-PHGCNMAPDKKH 290 (595)
T ss_dssp EESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESS-CCCEEECTTSSE
T ss_pred EecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCC-ceEEEEcCCCCE
Confidence 88553 366777766 433 445544433 346778889987
Q ss_pred eeeeeeecCCCCeEEEEEcCCCc------------eeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCC
Q psy6859 103 IPTAAVSDQDSSRVHIYDCKGND------------MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGN 170 (261)
Q Consensus 103 ~~~~~~s~~~d~~i~i~d~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~ 170 (261)
++.. +..+.+|.++|+.+.+ ....+.. ......++|+|++ + ++++.-.++.|..||+. .
T Consensus 291 v~V~---~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v---G~gP~h~aF~~dG-~-aY~t~~ldsqV~kwdi~-~ 361 (595)
T 1fwx_A 291 LCVA---GKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL---GLGPLHTAFDGRG-N-AYTSLFLDSQVVKWNIE-D 361 (595)
T ss_dssp EEEE---CTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC---CSCEEEEEECTTS-E-EEEEETTTTEEEEEEHH-H
T ss_pred EEEe---CCCCCeEEEEECcccccccccccCcccceEEEcCC---CCCcceEEECCCC-e-EEEEEecCCcEEEEEhh-H
Confidence 7654 4678999999998653 2223322 2356889999999 4 57777889999999997 5
Q ss_pred ----------CccceeeccCcccCe-----EEEEEcCCCCEEEEEc---CCCeE----------EEeecccc
Q psy6859 171 ----------GTPLHVLDRLHTKPV-----VLIKFNPIYQVVVSVD---KAGIL----------EYWSGYKQ 214 (261)
Q Consensus 171 ----------~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~---~dg~i----------~iwd~~~~ 214 (261)
.+.+..+. .|..+- .++.++|||++|++.. .|..+ .++|+..+
T Consensus 362 a~~~~~g~~~~~vi~kid-V~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~ 432 (595)
T 1fwx_A 362 AIRAYAGEKVDPIKDKLD-VHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGD 432 (595)
T ss_dssp HHHHHHTCSCCCEEEEEE-CSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSS
T ss_pred hhhhhcccccceeEEEee-cccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCC
Confidence 44566665 443321 2235689999998865 24321 77888543
No 250
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.93 E-value=1e-06 Score=73.15 Aligned_cols=159 Identities=10% Similarity=0.011 Sum_probs=101.3
Q ss_pred EEEEeeCCCEEEEEeCCC-------------------cEEEEEccccceeeeeeccC---------cceeEEEEeecCCc
Q psy6859 51 SICTNYNGTLLCTVASDK-------------------AMKVFDVINFDMINMIKLDF---------TPLTVECIHYLGDA 102 (261)
Q Consensus 51 ~~~~~~~~~~l~s~~~dg-------------------~v~~wd~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ 102 (261)
.+++.++...++.++.++ .|..+|..+|+.+..++... .+.....+..+++.
T Consensus 234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~ 313 (668)
T 1kv9_A 234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKP 313 (668)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcE
Confidence 467888777888887766 39999999999988877532 12222233334432
Q ss_pred eeeeeeecCCCCeEEEEEcCCCceeeEEeecCCc----------ceE------------------------EEEEEeCCC
Q psy6859 103 IPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTP----------LTV------------------------ECIHYLGDA 148 (261)
Q Consensus 103 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~----------~~~------------------------~~~~~~~~~ 148 (261)
. -.++.++.+|.+.++|.++++.+........+ ..+ ..++++|+.
T Consensus 314 ~-~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~ 392 (668)
T 1kv9_A 314 R-KVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT 392 (668)
T ss_dssp E-EEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred E-EEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCC
Confidence 1 11233489999999999999887544322100 000 014566654
Q ss_pred CceEEE----------------------------------EecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCC
Q psy6859 149 IPTAAV----------------------------------SDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIY 194 (261)
Q Consensus 149 ~~~~~~----------------------------------~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 194 (261)
...++- ....+|.|..||+. +++.+.+++ ...+.....+...+
T Consensus 393 g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~-tG~~~W~~~--~~~~~~~~~~~t~g 469 (668)
T 1kv9_A 393 GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPV-KQKAAWKVP--YPTHWNGGTLSTAG 469 (668)
T ss_dssp TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETT-TTEEEEEEE--ESSSCCCCEEEETT
T ss_pred CEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCC-CCcEEEEcc--CCCCCcCceeEeCC
Confidence 422110 11234889999998 998888775 33334444455577
Q ss_pred CEEEEEcCCCeEEEeeccc
Q psy6859 195 QVVVSVDKAGILEYWSGYK 213 (261)
Q Consensus 195 ~~l~~~~~dg~i~iwd~~~ 213 (261)
.+++.++.|+.++.||.++
T Consensus 470 g~vf~g~~dg~l~a~d~~t 488 (668)
T 1kv9_A 470 NLVFQGTAAGQMHAYSADK 488 (668)
T ss_dssp TEEEEECTTSEEEEEETTT
T ss_pred CEEEEECCcccchhhhhhc
Confidence 8888899999999999854
No 251
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.84 E-value=2.5e-06 Score=70.81 Aligned_cols=235 Identities=9% Similarity=-0.014 Sum_probs=120.6
Q ss_pred EEEEcC-CCeEEEec-CCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEe-CC-----CcEEEEEccccc
Q psy6859 8 HVVVTK-TDFVITAS-NDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVA-SD-----KAMKVFDVINFD 79 (261)
Q Consensus 8 ~~~~~~-~~~l~s~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d-----g~v~~wd~~~~~ 79 (261)
++++.. +.+++.|+ .+..+.+||..+.....+..+.... .-.+++..++++.++.|+ .+ ..+.+||..+++
T Consensus 247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R-~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 247 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred cccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccc-cccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 456666 78888887 4568999999886444443332211 113455667899999988 34 468999998765
Q ss_pred eeeee-----eccCcceeEEEEeecCCceeeee-----eecCCCCeEEEEEcCCCceeeEEeecCC-------cceEEEE
Q psy6859 80 MINMI-----KLDFTPLTVECIHYLGDAIPTAA-----VSDQDSSRVHIYDCKGNDMINMIKLDFT-------PLTVECI 142 (261)
Q Consensus 80 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-----~s~~~d~~i~i~d~~~~~~~~~~~~~~~-------~~~~~~~ 142 (261)
....- ..... .....+..++...+... +.......+..||..+............ +..-.++
T Consensus 326 W~~~~~~~~~p~~~~-~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av 404 (656)
T 1k3i_A 326 WTSLPNAKVNPMLTA-DKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAV 404 (656)
T ss_dssp EEEETTSCSGGGCCC-CTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEE
T ss_pred ceeCCCccccccccc-cccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceE
Confidence 43320 00000 00000001111111110 0012345788999887764433322111 1122344
Q ss_pred EEeCCCCceEEEEecCCC-----------eEEEEEccCCCccceee-ccCcccC-eEEEEEcCCCCEEEEEcCC------
Q psy6859 143 HYLGDAIPTAAVSDQDSS-----------HVHIYDCKGNGTPLHVL-DRLHTKP-VVLIKFNPIYQVVVSVDKA------ 203 (261)
Q Consensus 143 ~~~~~~~~~~~~~~~~d~-----------~i~i~d~~~~~~~~~~~-~~~~~~~-v~~~~~~~~~~~l~~~~~d------ 203 (261)
.+...+. .+++.|+.++ .+.+||.. +..-.... ....... -.++...|++++++.|+.+
T Consensus 405 ~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~v~~yd~~-~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~ 482 (656)
T 1k3i_A 405 MYDAVKG-KILTFGGSPDYQDSDATTNAHIITLGEPG-TSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFE 482 (656)
T ss_dssp EEETTTT-EEEEECCBSSSSSSBCCCCEEEEECCSTT-SCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTC
T ss_pred eccCCCC-eEEEEeCCCCCCCCCcCCcceEEEcCCCC-CCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcC
Confidence 4443222 2356665332 67788876 44322211 0011222 2345667899999888854
Q ss_pred -----CeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeec
Q psy6859 204 -----GILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISM 259 (261)
Q Consensus 204 -----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 259 (261)
..+.+||..+++. +.+..+...........+.|+|+.++.||.
T Consensus 483 ~~~~~~~v~~ydp~t~~W-------------~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 483 DSTPVFTPEIYVPEQDTF-------------YKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCSBCCCCEEEEGGGTEE-------------EECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCcccceEEEcCCCCce-------------eecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 4578898865322 111111111122234456799999999885
No 252
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.83 E-value=2.4e-05 Score=66.47 Aligned_cols=226 Identities=8% Similarity=0.014 Sum_probs=132.5
Q ss_pred CCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEee------ccccceeEEEEeeCCCEEEEEeCCCcEEEEEccc
Q psy6859 4 SPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFR------SHLGVIHSICTNYNGTLLCTVASDKAMKVFDVIN 77 (261)
Q Consensus 4 ~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~ 77 (261)
..|.++...+...|..|+.++-|..|+..+........-. -....|.++...++++.|..|+.++-|..+|..+
T Consensus 357 ~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~ 436 (795)
T 4a2l_A 357 NVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNS 436 (795)
T ss_dssp SSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTT
T ss_pred CeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCC
Confidence 4688998887445667888888899998765222211100 1235688998888887466677777799999877
Q ss_pred cceeeeee----ccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEee----cCCcceEEEEEEeCCCC
Q psy6859 78 FDMINMIK----LDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKL----DFTPLTVECIHYLGDAI 149 (261)
Q Consensus 78 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 149 (261)
++...... .....+..+....++ .+..+ +. +.+.+||..+++....... ......+.++...+++.
T Consensus 437 ~~~~~~~~~~~~l~~~~v~~i~~d~~g-~lwig----t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~ 510 (795)
T 4a2l_A 437 GQVENFNQRNSQLVNENVYAILPDGEG-NLWLG----TL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKR 510 (795)
T ss_dssp CCEEEECTTTSCCSCSCEEEEEECSSS-CEEEE----ES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCC
T ss_pred CcEEEeecCCCCcCCCeeEEEEECCCC-CEEEE----ec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCC
Confidence 65433211 112223333333333 33333 33 5688899887654332211 11234688888888886
Q ss_pred ceEEEEecCCCeEEEEEccCCCccceeec------cCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeee
Q psy6859 150 PTAAVSDQDSSHVHIYDCKGNGTPLHVLD------RLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVH 223 (261)
Q Consensus 150 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 223 (261)
+..|+. +-+..||.. +.+. .+. ......|.++..+++|++.++.. .| |..||..++.+.
T Consensus 511 ---lWigt~-~Gl~~~~~~-~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~G-l~~~d~~~~~~~------ 575 (795)
T 4a2l_A 511 ---LWIGGE-EGLSVFKQE-GLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-EG-FYCFNEKDKQIK------ 575 (795)
T ss_dssp ---EEEEES-SCEEEEEEE-TTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-SC-EEEEETTTTEEE------
T ss_pred ---EEEEeC-CceEEEeCC-CCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-CC-ceeECCCCCcEE------
Confidence 444444 568889987 5543 221 12345789999999998555444 34 788887543210
Q ss_pred eecccccceeecCC-CccceeeeeECCCCceEEEe
Q psy6859 224 FESKLDTDLFEFAK-NKTYPSGLSFSPDGNKFVTI 257 (261)
Q Consensus 224 ~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~ 257 (261)
......+ ....|.++...++|++.+++
T Consensus 576 -------~~~~~~gl~~~~i~~i~~d~~g~lWi~t 603 (795)
T 4a2l_A 576 -------RYNTTNGLPNNVVYGILEDSFGRLWLST 603 (795)
T ss_dssp -------EECGGGTCSCSCEEEEEECTTSCEEEEE
T ss_pred -------EeCCCCCCchhheEEEEECCCCCEEEEc
Confidence 0001111 23457777777777765544
No 253
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.81 E-value=1.2e-05 Score=58.88 Aligned_cols=189 Identities=11% Similarity=0.052 Sum_probs=111.2
Q ss_pred eEEEecCCCeEEEEeccCCceee---eEEeeccccceeEEEEeeCCCEEEEE-eCCCcEEEEEccccceeeeeeccCcce
Q psy6859 16 FVITASNDGHIKFWKKQEEGIEF---VKHFRSHLGVIHSICTNYNGTLLCTV-ASDKAMKVFDVINFDMINMIKLDFTPL 91 (261)
Q Consensus 16 ~l~s~~~d~~i~iw~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~v~~wd~~~~~~~~~~~~~~~~~ 91 (261)
+|+.+.. +.|+.++++...... ...+......+..++|++++..|+.+ ..++.|..+++........+.......
T Consensus 3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p 81 (267)
T 1npe_A 3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP 81 (267)
T ss_dssp EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCc
Confidence 4444443 578888887642211 11122223457899999966555554 457899999986554333222222233
Q ss_pred eEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecC--CCeEEEEEccC
Q psy6859 92 TVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD--SSHVHIYDCKG 169 (261)
Q Consensus 92 ~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~~i~i~d~~~ 169 (261)
..+.+.+.+..++.. ....+.|.++++........... .......++++|++..+ +++... .+.|..+++.
T Consensus 82 ~~ia~d~~~~~lyv~---d~~~~~I~~~~~~g~~~~~~~~~--~~~~P~~i~vd~~~g~l-yv~~~~~~~~~I~~~~~d- 154 (267)
T 1npe_A 82 EGIALDHLGRTIFWT---DSQLDRIEVAKMDGTQRRVLFDT--GLVNPRGIVTDPVRGNL-YWTDWNRDNPKIETSHMD- 154 (267)
T ss_dssp EEEEEETTTTEEEEE---ETTTTEEEEEETTSCSCEEEECS--SCSSEEEEEEETTTTEE-EEEECCSSSCEEEEEETT-
T ss_pred cEEEEEecCCeEEEE---ECCCCEEEEEEcCCCCEEEEEEC--CCCCccEEEEeeCCCEE-EEEECCCCCcEEEEEecC-
Confidence 455666655555443 24578899999876533222221 12345789999965543 444433 4688888875
Q ss_pred CCccceeeccCcccCeEEEEEcCCCCEE-EEEcCCCeEEEeeccc
Q psy6859 170 NGTPLHVLDRLHTKPVVLIKFNPIYQVV-VSVDKAGILEYWSGYK 213 (261)
Q Consensus 170 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~ 213 (261)
+.....+....-.....++++|++..| ++-...+.|..+|+..
T Consensus 155 -g~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g 198 (267)
T 1npe_A 155 -GTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ 198 (267)
T ss_dssp -SCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE
T ss_pred -CCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC
Confidence 333333321223457899999987766 4455678899999864
No 254
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.81 E-value=6.2e-06 Score=67.12 Aligned_cols=187 Identities=11% Similarity=0.018 Sum_probs=108.5
Q ss_pred EEEeeCCCEEEEEeCC----------------CcEEEEEccccceeeeeeccCc---------ceeEEEEeecCCceeee
Q psy6859 52 ICTNYNGTLLCTVASD----------------KAMKVFDVINFDMINMIKLDFT---------PLTVECIHYLGDAIPTA 106 (261)
Q Consensus 52 ~~~~~~~~~l~s~~~d----------------g~v~~wd~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 106 (261)
+++.++...++.+..+ +.|..+|..+++.+..++...+ .........+++... +
T Consensus 240 ~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~-~ 318 (571)
T 2ad6_A 240 YAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTP-L 318 (571)
T ss_dssp CEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEE-E
T ss_pred EEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEE-E
Confidence 5566665566665532 3599999999998888764321 111112222443111 1
Q ss_pred eeecCCCCeEEEEEcCCCceeeEEeecCCc-----------ceE--------------------------EEEEEeCCCC
Q psy6859 107 AVSDQDSSRVHIYDCKGNDMINMIKLDFTP-----------LTV--------------------------ECIHYLGDAI 149 (261)
Q Consensus 107 ~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~-----------~~~--------------------------~~~~~~~~~~ 149 (261)
.+.++.+|.+.++|.++++.+......... ..+ ..++++|+..
T Consensus 319 v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g 398 (571)
T 2ad6_A 319 LSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESR 398 (571)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTT
T ss_pred EEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCC
Confidence 122478999999999999887766543200 011 1246666655
Q ss_pred ceEEEEe-----------------------------------cCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCC
Q psy6859 150 PTAAVSD-----------------------------------QDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIY 194 (261)
Q Consensus 150 ~~~~~~~-----------------------------------~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 194 (261)
.+++.+. ..++.|..||.. +++.+.+++ ....+.+..+...+
T Consensus 399 ~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~-tG~~~W~~~--~~~~~~~~~~~t~g 475 (571)
T 2ad6_A 399 TLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLT-TGKAKWTKW--EKFAAWGGTLYTKG 475 (571)
T ss_dssp EEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTT-TCCEEEEEE--ESSCCCSBCEEETT
T ss_pred EEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECC-CCCEEEEec--CCCCccceeEEECC
Confidence 3222111 135789999998 888888775 33333333333445
Q ss_pred CEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCcc-ceeeeeECCCCceEEEe
Q psy6859 195 QVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT-YPSGLSFSPDGNKFVTI 257 (261)
Q Consensus 195 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~ 257 (261)
..++.++.||.|+.+|.++ ++.+.++..... .-.-+.+..+|+.++..
T Consensus 476 g~v~~g~~dg~l~a~D~~t---------------G~~lw~~~~~~~~~~~p~~~~~~G~~yv~~ 524 (571)
T 2ad6_A 476 GLVWYATLDGYLKALDNKD---------------GKELWNFKMPSGGIGSPMTYSFKGKQYIGS 524 (571)
T ss_dssp TEEEEECTTSEEEEEETTT---------------CCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred CEEEEEcCCCeEEEEECCC---------------CCEEEEEeCCCCcEeeeEEEEECCEEEEEE
Confidence 6777789999999999854 555555543211 11224455788755543
No 255
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.76 E-value=4.6e-05 Score=64.70 Aligned_cols=228 Identities=11% Similarity=0.095 Sum_probs=132.0
Q ss_pred CCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeec-------cccceeEEEEeeCCCEEEEEeCCCcEEEEEcc
Q psy6859 4 SPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRS-------HLGVIHSICTNYNGTLLCTVASDKAMKVFDVI 76 (261)
Q Consensus 4 ~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~ 76 (261)
..|.++...+...|..|+.++-+.+|+..+. +....... ....|.++...+++.+.+ |+.+ -|.+||..
T Consensus 215 ~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~--~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~ 290 (795)
T 4a2l_A 215 KQIQAILQQSPTRIWVATEGAGLFLINPKTK--EIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEG 290 (795)
T ss_dssp CCEEEEEEEETTEEEEEEBSSCEEEEETTTT--EEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETT
T ss_pred CeeEEEEEcCCCCEEEEECCCCeEEEeCCCC--eEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCC
Confidence 4577777766444555665555888888765 22221111 135689999888886555 4445 58899987
Q ss_pred ccceeeeee-------ccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEee----cCCcceEEEEEEe
Q psy6859 77 NFDMINMIK-------LDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKL----DFTPLTVECIHYL 145 (261)
Q Consensus 77 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~----~~~~~~~~~~~~~ 145 (261)
+++...... +....+..+....++ .+..+ +.++-|..|+..+......... ......|.++...
T Consensus 291 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g-~lWig----t~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d 365 (795)
T 4a2l_A 291 TDSFASYSSNPVENGSLSQRSVRSIFMDSQG-GMWLG----TYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVED 365 (795)
T ss_dssp TTEEEEECCCTTSTTSCSSSCEEEEEECTTS-CEEEE----ESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEEC
T ss_pred CCeEEEEecCCCCCCCCCCCcEEEEEEeCCc-CEEEE----ECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEEC
Confidence 665433221 112233333333333 34443 5677888898765543221111 1123468899888
Q ss_pred CCCCceEEEEecCCCeEEEEEccCCCccceeecc--------CcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccccccc
Q psy6859 146 GDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDR--------LHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFK 217 (261)
Q Consensus 146 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 217 (261)
+++. +..|+.++-|..||.. +++. ..+.. .....|.++...++++.|..|+.++-|..||..++.+.
T Consensus 366 ~~g~---lWiGt~~~Gl~~~~~~-~~~~-~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~ 440 (795)
T 4a2l_A 366 KDKN---LWIGTNDGGLNLYNPI-TQRF-TSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVE 440 (795)
T ss_dssp TTSC---EEEEESSSCEEEECTT-TCCE-EEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEE
T ss_pred CCCC---EEEEECCCCeEEEcCC-CCcE-EEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEE
Confidence 8886 6667777789999986 4433 22210 12357899999999885666776667999997643210
Q ss_pred CCeeeeeecccccceeecCCCccceeeeeECCCCceEEE
Q psy6859 218 FPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVT 256 (261)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 256 (261)
. +... .-......|.++...++|++.+.
T Consensus 441 ~-----~~~~------~~~l~~~~v~~i~~d~~g~lwig 468 (795)
T 4a2l_A 441 N-----FNQR------NSQLVNENVYAILPDGEGNLWLG 468 (795)
T ss_dssp E-----ECTT------TSCCSCSCEEEEEECSSSCEEEE
T ss_pred E-----eecC------CCCcCCCeeEEEEECCCCCEEEE
Confidence 0 0000 00013456788888877775544
No 256
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.73 E-value=3.3e-06 Score=70.08 Aligned_cols=156 Identities=8% Similarity=-0.029 Sum_probs=92.5
Q ss_pred CCeEEEecCCCeEEEEeccCCceeeeEEeeccc----cceeEEEEeeCCCEEEEEeC------CCcEEEEEccccceeee
Q psy6859 14 TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHL----GVIHSICTNYNGTLLCTVAS------DKAMKVFDVINFDMINM 83 (261)
Q Consensus 14 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~s~~~------dg~v~~wd~~~~~~~~~ 83 (261)
+..++.++.|+.|..+|..++ +.+..+.... ..+..--...++ .++.+.. +|.|..+|..+|+.+..
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG--~~~W~~~~~~~~~~~~~~~~P~v~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 193 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTG--KAIWSQQTTDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWR 193 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTC--CEEEEEECSCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCC--CEeeeeccCCCCCcceecCCCEEECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEE
Confidence 456788889999999999887 4554443211 111111111244 4555443 58999999999998887
Q ss_pred eeccC-cce------------------------------eEEEEeecCCceeeeeeecCCCC------------------
Q psy6859 84 IKLDF-TPL------------------------------TVECIHYLGDAIPTAAVSDQDSS------------------ 114 (261)
Q Consensus 84 ~~~~~-~~~------------------------------~~~~~~~~~~~~~~~~~s~~~d~------------------ 114 (261)
+.... .+. ....+.+..+.++.. +.++
T Consensus 194 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~----~~~g~~w~~~~~~~~~gd~l~~ 269 (668)
T 1kv9_A 194 FYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVG----TGNGSPWNREVRSPGGGDNLYL 269 (668)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEE----CCCEESSCHHHHSTTCCCCTTT
T ss_pred ecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEe----CCCCCccccCCCCCCCCCceee
Confidence 75311 110 112344444444433 3333
Q ss_pred -eEEEEEcCCCceeeEEeecCCc-------ceEEEEEEeCCCC-ceEEEEecCCCeEEEEEccCCCccceee
Q psy6859 115 -RVHIYDCKGNDMINMIKLDFTP-------LTVECIHYLGDAI-PTAAVSDQDSSHVHIYDCKGNGTPLHVL 177 (261)
Q Consensus 115 -~i~i~d~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~ 177 (261)
.|..+|.++++.+-.++...+. ..........++. ..+++.++.+|.++++|.. +++++...
T Consensus 270 ~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~-tG~~l~~~ 340 (668)
T 1kv9_A 270 SSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRT-NGKLISAE 340 (668)
T ss_dssp TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETT-TCCEEEEE
T ss_pred eeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECC-CCCEeccc
Confidence 4999999999988777653211 1122222222332 1247788899999999998 88877443
No 257
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.73 E-value=3.6e-05 Score=59.54 Aligned_cols=198 Identities=7% Similarity=-0.064 Sum_probs=117.4
Q ss_pred CeEEEEEcC-C-CeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEE-EEEeCCCcEEEEEcccccee
Q psy6859 5 PITHVVVTK-T-DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLL-CTVASDKAMKVFDVINFDMI 81 (261)
Q Consensus 5 ~v~~~~~~~-~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~v~~wd~~~~~~~ 81 (261)
....++|.+ + .++++-...+.|..++.+... ....+.........+++.+.+..| ++-...+.|.+.++......
T Consensus 117 ~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~--~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~ 194 (386)
T 3v65_B 117 NAIALDFHHRRELVFWSDVTLDRILRANLNGSN--VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK 194 (386)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCC--EEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE
T ss_pred ccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC--cEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE
Confidence 456788987 4 455565677889888887652 222222222345788998754444 55455678888887543322
Q ss_pred eeeeccCcceeEEEEeecCCceeeeeeecCCC-CeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCC
Q psy6859 82 NMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS-SRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS 160 (261)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 160 (261)
..+.........+.+.+.+..++.. -... +.|..+++........... .......++++|++.. ++++-...+
T Consensus 195 ~l~~~~l~~P~giavdp~~g~ly~t---d~~~~~~I~r~~~dG~~~~~~~~~--~~~~PnGlavd~~~~~-lY~aD~~~~ 268 (386)
T 3v65_B 195 VLLWQSLEKPRAIALHPMEGTIYWT---DWGNTPRIEASSMDGSGRRIIADT--HLFWPNGLTIDYAGRR-MYWVDAKHH 268 (386)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEE---ECSSSCEEEEEETTSCSCEEEECS--SCSCEEEEEEEGGGTE-EEEEETTTT
T ss_pred EeecCCCCCCcEEEEEcCCCeEEEe---ccCCCCEEEEEeCCCCCcEEEEEC--CCCCeeeEEEeCCCCE-EEEEECCCC
Confidence 2222222233455666656555443 1233 7888888876543333221 2224578999987664 466667788
Q ss_pred eEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859 161 HVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK 213 (261)
Q Consensus 161 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 213 (261)
.|..+|+. .......+. ........|++ ..+.++++-...+.|..++..+
T Consensus 269 ~I~~~d~d-G~~~~~~~~-~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~ 318 (386)
T 3v65_B 269 VIERANLD-GSHRKAVIS-QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFT 318 (386)
T ss_dssp EEEEECTT-SCSCEEEEC-SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTT
T ss_pred EEEEEeCC-CCeeEEEEE-CCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCC
Confidence 99999986 332222232 23445678888 3455556666778888888533
No 258
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.70 E-value=2.7e-05 Score=56.20 Aligned_cols=195 Identities=15% Similarity=0.119 Sum_probs=114.4
Q ss_pred EeeccccceeEEEEeeCCCEEE-EEeCCCcEEEEEccccceeeeeeccC-cceeEEEEeecCCceeeeeeecCCCCeEEE
Q psy6859 41 HFRSHLGVIHSICTNYNGTLLC-TVASDKAMKVFDVINFDMINMIKLDF-TPLTVECIHYLGDAIPTAAVSDQDSSRVHI 118 (261)
Q Consensus 41 ~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~v~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i 118 (261)
.+.+-.+.+..++|+|++..|+ +...++.|...|.. ++.++.+.... .....+.+..++..+++. ..++.+.+
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~----E~~~~l~~ 95 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISD----ERDYAIYV 95 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEE----TTTTEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEE----CCCCcEEE
Confidence 4455557799999999766555 46678889999986 88888776532 223334444444322222 56788889
Q ss_pred EEcCCCce---eeEEeec----CCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeec------cCcccCe
Q psy6859 119 YDCKGNDM---INMIKLD----FTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD------RLHTKPV 185 (261)
Q Consensus 119 ~d~~~~~~---~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~------~~~~~~v 185 (261)
+++..... +...... ........++++|.+..++++.......|+.|+-......+..+. ......+
T Consensus 96 ~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~ 175 (255)
T 3qqz_A 96 ISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDV 175 (255)
T ss_dssp EEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCC
T ss_pred EEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCc
Confidence 88775542 2333221 123356899999998764443332222455554110111222221 0123356
Q ss_pred EEEEEcCCCC-EEEEEcCCCeEEEeecccccccCCeeeeeeccccccee--ecC-CC------ccceeeeeECCCCceEE
Q psy6859 186 VLIKFNPIYQ-VVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLF--EFA-KN------KTYPSGLSFSPDGNKFV 255 (261)
Q Consensus 186 ~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~------~~~v~~~~~s~~~~~l~ 255 (261)
.+++++|... +++.......|..+|... +.+. .+. +. -.....|+|.|+|++.+
T Consensus 176 S~l~~dp~tg~lliLS~~s~~L~~~d~~g----------------~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyI 239 (255)
T 3qqz_A 176 SGAEFNQQKNTLLVLSHESRALQEVTLVG----------------EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYI 239 (255)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEECTTC----------------CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEE
T ss_pred eeEEEcCCCCeEEEEECCCCeEEEEcCCC----------------CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEE
Confidence 8899999655 556677888899999753 2222 222 11 13567899999998665
Q ss_pred E
Q psy6859 256 T 256 (261)
Q Consensus 256 s 256 (261)
+
T Consensus 240 v 240 (255)
T 3qqz_A 240 V 240 (255)
T ss_dssp E
T ss_pred E
Confidence 5
No 259
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.69 E-value=2.7e-05 Score=63.57 Aligned_cols=169 Identities=10% Similarity=0.087 Sum_probs=98.4
Q ss_pred CcEEEEEccccceeeeeeccCcc-------eeEEEEe---ecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcc
Q psy6859 68 KAMKVFDVINFDMINMIKLDFTP-------LTVECIH---YLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPL 137 (261)
Q Consensus 68 g~v~~wd~~~~~~~~~~~~~~~~-------~~~~~~~---~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 137 (261)
+.|.-+|..+|+.+..++...+. ....... .+++.. -+++.++.+|.+.++|.++++.+..........
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~-~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~ 369 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIV-KATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT 369 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEE-EEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEE-EEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence 57999999999998887653221 1112222 234321 122345899999999999998877665432000
Q ss_pred -----------e---------------------E-----------EEEEEeCCCCceEEEE-------------------
Q psy6859 138 -----------T---------------------V-----------ECIHYLGDAIPTAAVS------------------- 155 (261)
Q Consensus 138 -----------~---------------------~-----------~~~~~~~~~~~~~~~~------------------- 155 (261)
. . ..++++|+....++.+
T Consensus 370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~ 449 (582)
T 1flg_A 370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA 449 (582)
T ss_dssp SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence 0 0 0234455443221111
Q ss_pred ------------ecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeee
Q psy6859 156 ------------DQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVH 223 (261)
Q Consensus 156 ------------~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 223 (261)
...+|.|..||+. +++.+.+.+ ...++..-.....+.+++.++.|+.++.||.++
T Consensus 450 ~~g~~~~~~p~~~~~~G~l~A~D~~-tG~~~W~~~--~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~t---------- 516 (582)
T 1flg_A 450 YLGMGFRIKRMYDDHVGSLRAMDPV-SGKVVWEHK--EHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKS---------- 516 (582)
T ss_dssp CCCEEEEEEESCSSCSEEEEEECTT-TCCEEEEEE--ESSCCCSCCEEETTTEEEEECTTSEEEEEETTT----------
T ss_pred eeccceeecCCCCCCcceEEEEECC-CCCEEEEec--CCCCCcccceEeCCCEEEEECCCCcEEEEECCC----------
Confidence 0136889999998 888887775 222222222223466788899999999999854
Q ss_pred eecccccceeecCCCccce-eeeeECCCCceEE
Q psy6859 224 FESKLDTDLFEFAKNKTYP-SGLSFSPDGNKFV 255 (261)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~ 255 (261)
++.+.+++...... .-+.+..+|+..+
T Consensus 517 -----G~~lW~~~~~~g~~a~P~~y~~~G~qYv 544 (582)
T 1flg_A 517 -----GKELWKFQTGSGIVSPPITWEQDGEQYL 544 (582)
T ss_dssp -----CCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred -----CCEEEEecCCCCcccCceEEEECCEEEE
Confidence 66666555422221 2356667887433
No 260
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.67 E-value=2.3e-05 Score=63.95 Aligned_cols=184 Identities=11% Similarity=-0.022 Sum_probs=106.0
Q ss_pred EEEeeCCCEEEEEeCC----------------CcEEEEEccccceeeeeeccCcce---------eEEEEe-ecCCceee
Q psy6859 52 ICTNYNGTLLCTVASD----------------KAMKVFDVINFDMINMIKLDFTPL---------TVECIH-YLGDAIPT 105 (261)
Q Consensus 52 ~~~~~~~~~l~s~~~d----------------g~v~~wd~~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~~~~ 105 (261)
+++.++...++.+..+ +.|..+|..+|+.+..++...+.. ...... .+++.. .
T Consensus 246 ~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~-~ 324 (599)
T 1w6s_A 246 YAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKAR-K 324 (599)
T ss_dssp CEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEE-E
T ss_pred eeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEE-E
Confidence 4566666677776654 379999999999988877543211 111121 234321 1
Q ss_pred eeeecCCCCeEEEEEcCCCceeeEEeecCC----------cc-eE--------------------------EEEEEeCCC
Q psy6859 106 AAVSDQDSSRVHIYDCKGNDMINMIKLDFT----------PL-TV--------------------------ECIHYLGDA 148 (261)
Q Consensus 106 ~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~----------~~-~~--------------------------~~~~~~~~~ 148 (261)
+++.++.+|.+.++|.++++.+........ .. .+ ..++++|+.
T Consensus 325 ~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~ 404 (599)
T 1w6s_A 325 LLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKR 404 (599)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred EEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCC
Confidence 123348999999999999988776653210 00 00 123455543
Q ss_pred CceEEE-----------------------------E--ec------CCCeEEEEEccCCCccceeeccCcccCeEEEEEc
Q psy6859 149 IPTAAV-----------------------------S--DQ------DSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFN 191 (261)
Q Consensus 149 ~~~~~~-----------------------------~--~~------~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~ 191 (261)
..+++. . .+ ..|.|..||+. +++.+.+.+ +..+...-.+.
T Consensus 405 ~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~-tG~~~W~~~--~~~~~~~g~~~ 481 (599)
T 1w6s_A 405 ELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAI-TGDYKWEKM--ERFAVWGGTMA 481 (599)
T ss_dssp TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTT-TCCEEEEEE--ESSCCCSBCEE
T ss_pred CEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECC-CCCEEeEec--CCCCccCcceE
Confidence 321110 0 01 35789999998 888887774 22222221223
Q ss_pred CCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCcc-ceeeeeECCCCceE
Q psy6859 192 PIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT-YPSGLSFSPDGNKF 254 (261)
Q Consensus 192 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l 254 (261)
..+.+++.++.|+.++.||.++ ++.+.+++.... ...-+.+..+|+..
T Consensus 482 tagg~vf~gt~dg~l~A~D~~t---------------G~~lW~~~l~~g~~~~P~~y~~~G~qy 530 (599)
T 1w6s_A 482 TAGDLVFYGTLDGYLKARDSDT---------------GDLLWKFKIPSGAIGYPMTYTHKGTQY 530 (599)
T ss_dssp ETTTEEEEECTTSEEEEEETTT---------------CCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred ecCCEEEEECCCCeEEEEECCC---------------CCEEEEeeCCCCcEeccEEEEeCCEEE
Confidence 3566777799999999999954 555655543221 11235566677643
No 261
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.63 E-value=2.3e-05 Score=63.81 Aligned_cols=159 Identities=6% Similarity=-0.116 Sum_probs=91.2
Q ss_pred CCeEEEecCCCeEEEEeccCCceeeeEEee--cccc--ceeEEEEeeCCCEEEEEeC------CCcEEEEEccccceeee
Q psy6859 14 TDFVITASNDGHIKFWKKQEEGIEFVKHFR--SHLG--VIHSICTNYNGTLLCTVAS------DKAMKVFDVINFDMINM 83 (261)
Q Consensus 14 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~--~~~~--~v~~~~~~~~~~~l~s~~~------dg~v~~wd~~~~~~~~~ 83 (261)
+..++.++.|+.+..+|..++ +.+.... .+.. .+.+--...++ .++.++. ++.|..+|..+++.+..
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG--~~~W~~~~~~~~~~~~~~~~P~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 191 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTG--KINWEVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWR 191 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTC--CEEEEEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCC--CEEEEecCCCCCccceeccCCEEECC-EEEEEecCCccCCCCEEEEEECCCCcEEEE
Confidence 456778888999999999887 4444333 2211 22211111244 5555554 78999999999998887
Q ss_pred eeccCcce--------------------------------------eEEEEeecCCceeeeeeecC----------CC--
Q psy6859 84 IKLDFTPL--------------------------------------TVECIHYLGDAIPTAAVSDQ----------DS-- 113 (261)
Q Consensus 84 ~~~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~s~~----------~d-- 113 (261)
+....... ....+.+....++.. ++. .+
T Consensus 192 ~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~--~g~~~~~~~~~~~gd~~ 269 (571)
T 2ad6_A 192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYG--SGNPAPWNETMRPGDNK 269 (571)
T ss_dssp EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEE--CCCCSCSCGGGSCSCCT
T ss_pred EccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEE--CCCCccccCCccCCCce
Confidence 66432110 012222333333322 110 11
Q ss_pred --CeEEEEEcCCCceeeEEeecCCc-------ceEEEEEEeCCCCc-eEEEEecCCCeEEEEEccCCCccceeec
Q psy6859 114 --SRVHIYDCKGNDMINMIKLDFTP-------LTVECIHYLGDAIP-TAAVSDQDSSHVHIYDCKGNGTPLHVLD 178 (261)
Q Consensus 114 --~~i~i~d~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~ 178 (261)
+.|..+|.++++.+-.++...+. ....-+....++.. .+++.++.+|.++++|.. +++++..++
T Consensus 270 y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~-tG~~~w~~~ 343 (571)
T 2ad6_A 270 WTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRE-NGNLIVAEK 343 (571)
T ss_dssp TTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETT-TCCEEEEEE
T ss_pred eEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECC-CCCEEeeec
Confidence 36999999999988777643211 11111222234531 235667889999999998 888876654
No 262
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.62 E-value=0.0001 Score=62.55 Aligned_cols=226 Identities=12% Similarity=0.066 Sum_probs=128.7
Q ss_pred CCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEe-------eccccceeEEEEeeCCCEEEEEeCCCcEEEEEcc
Q psy6859 4 SPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHF-------RSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVI 76 (261)
Q Consensus 4 ~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~ 76 (261)
..|.++...+...|..|+.++-|..++............ ......|.++...++++ |..|+.++-|..||..
T Consensus 313 ~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~ 391 (781)
T 3v9f_A 313 ASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENG 391 (781)
T ss_dssp SCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETT
T ss_pred CeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECC
Confidence 568888888844566778778888888775422222110 00235688888887775 5556666678899976
Q ss_pred ccceeeee---eccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEee-cCCcceEEEEEEeCCCCceE
Q psy6859 77 NFDMINMI---KLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKL-DFTPLTVECIHYLGDAIPTA 152 (261)
Q Consensus 77 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 152 (261)
+++..... ......+..+.... ...+... +.++.+..+|.++++... +.. ......+.++...+++.
T Consensus 392 ~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lWig----t~~~Gl~~~~~~~~~~~~-~~~~~~~~~~v~~i~~d~~g~--- 462 (781)
T 3v9f_A 392 KRVAIYNKENRELLSNSVLCSLKDS-EGNLWFG----TYLGNISYYNTRLKKFQI-IELEKNELLDVRVFYEDKNKK--- 462 (781)
T ss_dssp EEEEECC-----CCCSBEEEEEECT-TSCEEEE----ETTEEEEEECSSSCEEEE-CCSTTTCCCCEEEEEECTTSE---
T ss_pred CCeEEEccCCCCCCCcceEEEEECC-CCCEEEE----eccCCEEEEcCCCCcEEE-eccCCCCCCeEEEEEECCCCC---
Confidence 55432211 11112222222222 3344443 556778889987764332 221 12234688888887775
Q ss_pred EEEecCCCeEEEEEccCCCccceeeccCc-----ccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecc
Q psy6859 153 AVSDQDSSHVHIYDCKGNGTPLHVLDRLH-----TKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESK 227 (261)
Q Consensus 153 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 227 (261)
+..|+. +-|..||.. +++...... .. ...|.++...++|++.+....+| |..||..++.+.
T Consensus 463 lwigt~-~Gl~~~~~~-~~~~~~~~~-~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~---------- 528 (781)
T 3v9f_A 463 IWIGTH-AGVFVIDLA-SKKVIHHYD-TSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVR---------- 528 (781)
T ss_dssp EEEEET-TEEEEEESS-SSSCCEEEC-TTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEE----------
T ss_pred EEEEEC-CceEEEeCC-CCeEEeccc-CcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEE----------
Confidence 444444 568899986 544332221 11 46789999999988555444355 777887542110
Q ss_pred cccceeecC-CCccceeeeeECCCCceEEE
Q psy6859 228 LDTDLFEFA-KNKTYPSGLSFSPDGNKFVT 256 (261)
Q Consensus 228 ~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s 256 (261)
...... .....|.++...++|++.++
T Consensus 529 ---~~~~~~~l~~~~i~~i~~d~~g~lWi~ 555 (781)
T 3v9f_A 529 ---KFNQYEGFCSNTINQIYRSSKGQMWLA 555 (781)
T ss_dssp ---EECTTTTCSCSCEEEEEECTTSCEEEE
T ss_pred ---EccCCCCCCCCeeEEEEECCCCCEEEE
Confidence 000001 12456788888888875554
No 263
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.61 E-value=2.3e-05 Score=59.03 Aligned_cols=185 Identities=9% Similarity=0.005 Sum_probs=104.6
Q ss_pred ceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeecc--------------------CcceeEEEEeecCCceeeee
Q psy6859 48 VIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLD--------------------FTPLTVECIHYLGDAIPTAA 107 (261)
Q Consensus 48 ~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~ 107 (261)
...+++|.+++++++++..++.|..|+..+++.. .+... ......+.+.+....++.+
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~- 97 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV- 97 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE-
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE-
Confidence 4577889999987888888899999988655432 22110 0112334454423344443
Q ss_pred eecCCCCeEEEEEcCCCceeeEEeec---CCcceEEEEEEeC-CCCceEEEEecC-----------------CCeEEEEE
Q psy6859 108 VSDQDSSRVHIYDCKGNDMINMIKLD---FTPLTVECIHYLG-DAIPTAAVSDQD-----------------SSHVHIYD 166 (261)
Q Consensus 108 ~s~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~-----------------d~~i~i~d 166 (261)
...+.+..+|..++.. ..+... ........+.+.+ ++. ++++... ++.|..||
T Consensus 98 ---d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~--l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d 171 (322)
T 2fp8_A 98 ---DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGI--VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD 171 (322)
T ss_dssp ---ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCC--EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred ---ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCE--EEEECCcccccccccceehcccCCCceEEEEe
Confidence 3445588888775532 222111 0112457788999 885 2444321 36788888
Q ss_pred ccCCCccceeeccCcccCeEEEEEcCCCCEEEEE-cCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeee
Q psy6859 167 CKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSV-DKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGL 245 (261)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 245 (261)
.. +++..... ..-...+.++++|+++.|+.+ ...+.|..|++..... ...+.+..+. + ...+
T Consensus 172 ~~-~~~~~~~~--~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~----------~~~~~~~~~~---g-P~gi 234 (322)
T 2fp8_A 172 PS-TKETTLLL--KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK----------GTAEVLVKIP---N-PGNI 234 (322)
T ss_dssp TT-TTEEEEEE--EEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT----------TCEEEEEECS---S-EEEE
T ss_pred CC-CCEEEEec--cCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC----------CccceEEeCC---C-CCCe
Confidence 75 44432222 222345679999999866554 5678899999864210 0001111111 2 5677
Q ss_pred eECCCCceEEEe
Q psy6859 246 SFSPDGNKFVTI 257 (261)
Q Consensus 246 ~~s~~~~~l~s~ 257 (261)
++.++|++.++.
T Consensus 235 ~~d~~G~l~va~ 246 (322)
T 2fp8_A 235 KRNADGHFWVSS 246 (322)
T ss_dssp EECTTSCEEEEE
T ss_pred EECCCCCEEEEe
Confidence 888888765554
No 264
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.59 E-value=8.7e-05 Score=56.56 Aligned_cols=198 Identities=7% Similarity=-0.049 Sum_probs=117.2
Q ss_pred CeEEEEEcC-CC-eEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCC-EEEEEeCCCcEEEEEcccccee
Q psy6859 5 PITHVVVTK-TD-FVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGT-LLCTVASDKAMKVFDVINFDMI 81 (261)
Q Consensus 5 ~v~~~~~~~-~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~v~~wd~~~~~~~ 81 (261)
....++|++ ++ ++++-...+.|..++.+... ....+.........+++.+.+. ++++-...+.|.+.++......
T Consensus 74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~--~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~ 151 (349)
T 3v64_C 74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSN--VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK 151 (349)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred ceEEEEEeccccEEEEEeccCCceEEEecCCCC--ceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE
Confidence 357888987 44 55555677888888887652 2222222223457899987544 4455556778999998643322
Q ss_pred eeeeccCcceeEEEEeecCCceeeeeeecCCC-CeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCC
Q psy6859 82 NMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS-SRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS 160 (261)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 160 (261)
..+.........+.+.+.+..++.. -... +.|..+++........+.. .-.....++++|+... ++++-...+
T Consensus 152 ~l~~~~l~~P~~iavdp~~g~ly~t---d~~~~~~I~r~~~dG~~~~~~~~~--~~~~PnGla~d~~~~~-lY~aD~~~~ 225 (349)
T 3v64_C 152 VLLWQSLEKPRAIALHPMEGTIYWT---DWGNTPRIEASSMDGSGRRIIADT--HLFWPNGLTIDYAGRR-MYWVDAKHH 225 (349)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEE---ECSSSCEEEEEETTSCSCEESCCS--SCSCEEEEEEETTTTE-EEEEETTTT
T ss_pred EEEeCCCCCcceEEEecCcCeEEEe---ccCCCCEEEEEeCCCCCcEEEEEC--CCCCcceEEEeCCCCE-EEEEECCCC
Confidence 2222222233456666655555443 1334 7888888876533222221 2234688999987664 466666788
Q ss_pred eEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859 161 HVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK 213 (261)
Q Consensus 161 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 213 (261)
.|..+|+. .......+. ........+++ ..+.+.++-...+.|..++..+
T Consensus 226 ~I~~~~~d-G~~~~~~~~-~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~ 275 (349)
T 3v64_C 226 VIERANLD-GSHRKAVIS-QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFT 275 (349)
T ss_dssp EEEEEETT-SCSCEEEEC-SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTT
T ss_pred EEEEEeCC-CCceEEEEe-CCCCCceEEEE-ECCEEEEecCCCCeEEEEEccC
Confidence 99999986 332222232 23445678888 3455556666778888887433
No 265
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.59 E-value=6e-05 Score=54.39 Aligned_cols=196 Identities=10% Similarity=0.098 Sum_probs=119.3
Q ss_pred CCeEEEEEcC-CC-eEEEecCCCeEEEEeccCCceeeeEEee-ccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccce
Q psy6859 4 SPITHVVVTK-TD-FVITASNDGHIKFWKKQEEGIEFVKHFR-SHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDM 80 (261)
Q Consensus 4 ~~v~~~~~~~-~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~ 80 (261)
+.+..++|+| ++ ++++...++.|...|.. + +.++.+. .-......|++.+++.++++.-.++.+.++++.....
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g--~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~ 103 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-G--DLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSE 103 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETT-C--CEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCC
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-C--CEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCe
Confidence 5689999998 55 55556778888888887 4 4555542 1124578889998887777766778899998765432
Q ss_pred ---eeeeecc------CcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCC---CceeeEEee-----cCCcceEEEEE
Q psy6859 81 ---INMIKLD------FTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKG---NDMINMIKL-----DFTPLTVECIH 143 (261)
Q Consensus 81 ---~~~~~~~------~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~---~~~~~~~~~-----~~~~~~~~~~~ 143 (261)
+...... ......+++.+.++.++.+ .......+|.++. ...+..+.. .........++
T Consensus 104 i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va----~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 104 VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFF----KEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEE----EESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred eeeeeeeccccccccccCCcceEEEeCCCCEEEEE----ECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 2222211 1223567777777677665 3333334444331 111222211 11122457899
Q ss_pred EeCCCCceEEEEecCCCeEEEEEccCCCccceeecc--Cc------ccCeEEEEEcCCCCEEEEEcCCCeEEEee
Q psy6859 144 YLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDR--LH------TKPVVLIKFNPIYQVVVSVDKAGILEYWS 210 (261)
Q Consensus 144 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~--~~------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 210 (261)
++|....+ ++.......+..+|.. ++++..+.. +. -.....|+|.|+|+ |+..++-+.+..+.
T Consensus 180 ~dp~tg~l-liLS~~s~~L~~~d~~--g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 180 FNQQKNTL-LVLSHESRALQEVTLV--GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFT 250 (255)
T ss_dssp EETTTTEE-EEEETTTTEEEEECTT--CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEE
T ss_pred EcCCCCeE-EEEECCCCeEEEEcCC--CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEE
Confidence 99987754 4445668889999975 556555541 11 13668999999998 44446666555554
No 266
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.54 E-value=0.00017 Score=61.12 Aligned_cols=198 Identities=11% Similarity=0.029 Sum_probs=114.7
Q ss_pred CCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEE-eeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceee
Q psy6859 4 SPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKH-FRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMIN 82 (261)
Q Consensus 4 ~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~ 82 (261)
..|.++...+...|..|+.++-|..++..+........ -......|.++...+++++. .|+.++-+..++..+++...
T Consensus 363 ~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~ 441 (781)
T 3v9f_A 363 KVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLW-FGTYLGNISYYNTRLKKFQI 441 (781)
T ss_dssp SCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEE-EEETTEEEEEECSSSCEEEE
T ss_pred cceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEE-EEeccCCEEEEcCCCCcEEE
Confidence 46888888873446667766778888876531111100 01233568888888777654 46666678889887665433
Q ss_pred eeeccCcceeEEEEeec-CCceeeeeeecCCCCeEEEEEcCCCceeeEEeec---CCcceEEEEEEeCCCCceEEEEecC
Q psy6859 83 MIKLDFTPLTVECIHYL-GDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLD---FTPLTVECIHYLGDAIPTAAVSDQD 158 (261)
Q Consensus 83 ~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (261)
..........+..+..+ ...+..+ +. +.+..||..+++........ .....+.++...+++. +..|+.
T Consensus 442 ~~~~~~~~~~v~~i~~d~~g~lwig----t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~---lWigt~ 513 (781)
T 3v9f_A 442 IELEKNELLDVRVFYEDKNKKIWIG----TH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGR---FWIGTF 513 (781)
T ss_dssp CCSTTTCCCCEEEEEECTTSEEEEE----ET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCC---EEEEES
T ss_pred eccCCCCCCeEEEEEECCCCCEEEE----EC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCC---EEEEEc
Confidence 21111111223333333 2334433 34 67889998876543332211 1134688888888886 445555
Q ss_pred CCeEEEEEccCCCccceeec---cCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859 159 SSHVHIYDCKGNGTPLHVLD---RLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK 213 (261)
Q Consensus 159 d~~i~i~d~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 213 (261)
.+-+..||.. +.+ +..+. ......|.++...++|.+.++.. +|.+..||..+
T Consensus 514 ~~Gl~~~~~~-~~~-~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~ 568 (781)
T 3v9f_A 514 GGGVGIYTPD-MQL-VRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARN 568 (781)
T ss_dssp SSCEEEECTT-CCE-EEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTT
T ss_pred CCCEEEEeCC-CCe-EEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCC
Confidence 4457888876 443 33332 01245789999999988555544 67548888754
No 267
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.53 E-value=0.00017 Score=56.67 Aligned_cols=199 Identities=9% Similarity=-0.045 Sum_probs=110.3
Q ss_pred CeEEEEEcCC---CeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCC---Cc-EEEEEccc
Q psy6859 5 PITHVVVTKT---DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASD---KA-MKVFDVIN 77 (261)
Q Consensus 5 ~v~~~~~~~~---~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---g~-v~~wd~~~ 77 (261)
.-..|+|.|. ..|..+...+.|+.++..++ .... +.........++++++++++++.... .. +...+...
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g--~v~~-~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQ--YVDI-KTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTT--EEEE-ECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCC--EEEE-eecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCC
Confidence 3457888862 44554444488999998765 3332 22234557899999999944443311 12 33333222
Q ss_pred cce-eeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEe
Q psy6859 78 FDM-INMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSD 156 (261)
Q Consensus 78 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (261)
+.. ...+.....+ ..+.+.+....++.. -..++.|..+|..++.....+...........++++|++.. ++++-
T Consensus 217 ~~~~~~~~~~~~~P-~giavd~~~G~lyv~---d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~-LYvad 291 (433)
T 4hw6_A 217 GFTERLSLCNARGA-KTCAVHPQNGKIYYT---RYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDW-AYIIY 291 (433)
T ss_dssp TTCCEEEEEECSSB-CCCEECTTTCCEEEC---BTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSE-EEEEE
T ss_pred CeeccccccccCCC-CEEEEeCCCCeEEEE---ECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCE-EEEEe
Confidence 111 0111111122 234555533333332 14677899999887765233222111222346999999974 46666
Q ss_pred cCCCeEEEEEccCCCccc---eeecc--------------CcccCeEEEEE---------cCCCCEEEEEcCCCeEEEee
Q psy6859 157 QDSSHVHIYDCKGNGTPL---HVLDR--------------LHTKPVVLIKF---------NPIYQVVVSVDKAGILEYWS 210 (261)
Q Consensus 157 ~~d~~i~i~d~~~~~~~~---~~~~~--------------~~~~~v~~~~~---------~~~~~~l~~~~~dg~i~iwd 210 (261)
...+.|+.+++......+ ..+.. ..-.....+++ .+++.+.++-...+.|+.++
T Consensus 292 ~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~ 371 (433)
T 4hw6_A 292 NGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT 371 (433)
T ss_dssp TTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC
T ss_pred CCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC
Confidence 778899998875211111 11210 01124677999 77777777777788899998
Q ss_pred c
Q psy6859 211 G 211 (261)
Q Consensus 211 ~ 211 (261)
.
T Consensus 372 ~ 372 (433)
T 4hw6_A 372 P 372 (433)
T ss_dssp T
T ss_pred C
Confidence 5
No 268
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.51 E-value=7.7e-05 Score=61.92 Aligned_cols=115 Identities=11% Similarity=0.056 Sum_probs=67.8
Q ss_pred EEEEcC--CCeEEEecCCC-----------eEEEEeccCCceeeeEEeec-cccceeEEEEeeCCCEEEEEeC-CCcEEE
Q psy6859 8 HVVVTK--TDFVITASNDG-----------HIKFWKKQEEGIEFVKHFRS-HLGVIHSICTNYNGTLLCTVAS-DKAMKV 72 (261)
Q Consensus 8 ~~~~~~--~~~l~s~~~d~-----------~i~iw~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~-dg~v~~ 72 (261)
++++.+ +++++.|+.+. .+.+||..+.....+..+.. +.....++++..++++++.|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 445554 56677776432 58889988875554444432 2233345778889999999984 458999
Q ss_pred EEccccceeeeeeccCccee-EEEEeecCCceeeeeeecCCC-----CeEEEEEcCCCc
Q psy6859 73 FDVINFDMINMIKLDFTPLT-VECIHYLGDAIPTAAVSDQDS-----SRVHIYDCKGND 125 (261)
Q Consensus 73 wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~d-----~~i~i~d~~~~~ 125 (261)
||..+++....-..+..... ...+.++++.++.. |..+ ..+.+||..+.+
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~G---G~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIG---GSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEEC---CCCCSSSCCCCEEEEETTTTE
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEe---CcccCCcccccceEeCCCCCc
Confidence 99987765443222222222 22333345433332 1122 578999998765
No 269
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.51 E-value=9.1e-05 Score=60.52 Aligned_cols=195 Identities=8% Similarity=-0.012 Sum_probs=116.5
Q ss_pred CCeEEEecC-CCeEEEEec-cCCceeeeEEeecccc-----------ceeEEEEeeCCCE----EEEEeCCCcEEEEEcc
Q psy6859 14 TDFVITASN-DGHIKFWKK-QEEGIEFVKHFRSHLG-----------VIHSICTNYNGTL----LCTVASDKAMKVFDVI 76 (261)
Q Consensus 14 ~~~l~s~~~-d~~i~iw~~-~~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~----l~s~~~dg~v~~wd~~ 76 (261)
+..++.++. ++.|.-+|. .++ +.+.++..... ....+++.|.+.. ++.++.|+.|.-+|..
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG--~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~ 139 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPG--TILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAE 139 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTT--SEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCC--cEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECC
Confidence 456667777 888999998 776 44444432211 0123455443334 7888899999999999
Q ss_pred ccceeeeeeccCc----cee-EEEEeecCCceeeeeeec---CCCCeEEEEEcCCCceeeEEeecCCcce----------
Q psy6859 77 NFDMINMIKLDFT----PLT-VECIHYLGDAIPTAAVSD---QDSSRVHIYDCKGNDMINMIKLDFTPLT---------- 138 (261)
Q Consensus 77 ~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~s~---~~d~~i~i~d~~~~~~~~~~~~~~~~~~---------- 138 (261)
+|+.+........ ... .-.+ . +..++.. .++ +.++.|.-+|.++++.+-.+........
T Consensus 140 TG~~~W~~~~~~~~~~~~~~ssP~v-~-~g~V~vg-~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~ 216 (599)
T 1w6s_A 140 TGETVWKVENSDIKVGSTLTIAPYV-V-KDKVIIG-SSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIK 216 (599)
T ss_dssp TCCEEEEEECCCGGGTCBCCSCCEE-E-TTEEEEC-CBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTT
T ss_pred CCCEEEeecCCCCCccceeecCCEE-E-CCEEEEE-ecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccc
Confidence 9998877664331 111 1111 1 2333332 000 1379999999999988776654321100
Q ss_pred -------------------------E-EEEEEeCCCCceEEEEecCC----------------CeEEEEEccCCCcccee
Q psy6859 139 -------------------------V-ECIHYLGDAIPTAAVSDQDS----------------SHVHIYDCKGNGTPLHV 176 (261)
Q Consensus 139 -------------------------~-~~~~~~~~~~~~~~~~~~~d----------------~~i~i~d~~~~~~~~~~ 176 (261)
+ ..+++.++... ++.+..+ +.|..+|.+ +++.+..
T Consensus 217 ~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~--vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~-TG~~~W~ 293 (599)
T 1w6s_A 217 NPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNL--IYFGTGNPAPWNETMRPGDNKWTMTIFGRDAD-TGEAKFG 293 (599)
T ss_dssp CGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTE--EEEECCCCSCSCGGGSCSCCTTSSEEEEEETT-TCCEEEE
T ss_pred cccccccccccccCCCcceecCCCccccceeEeCCCCE--EEEeCCCCccccCcccCCCccccceEEEEeCC-CCceeeE
Confidence 0 13455555543 3333333 479999998 8988877
Q ss_pred eccC-cc--------cCeEEEEEc-CCC---CEEEEEcCCCeEEEeeccccccc
Q psy6859 177 LDRL-HT--------KPVVLIKFN-PIY---QVVVSVDKAGILEYWSGYKQEFK 217 (261)
Q Consensus 177 ~~~~-~~--------~~v~~~~~~-~~~---~~l~~~~~dg~i~iwd~~~~~~~ 217 (261)
++.. |. .++. +... .+| +.++.++.+|.+.++|.++++..
T Consensus 294 ~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 346 (599)
T 1w6s_A 294 YQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALV 346 (599)
T ss_dssp EESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred eecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEe
Confidence 7622 21 1221 2222 567 46788899999999999876543
No 270
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.45 E-value=0.00025 Score=54.80 Aligned_cols=194 Identities=9% Similarity=0.003 Sum_probs=111.6
Q ss_pred EEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEE-eCCCcEEEEEccccceeeeeec
Q psy6859 8 HVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTV-ASDKAMKVFDVINFDMINMIKL 86 (261)
Q Consensus 8 ~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~v~~wd~~~~~~~~~~~~ 86 (261)
|.+..+..+|+.+ ....|+..++... .....+. ....+..++|.+.+..|+.+ ...+.|..+++........+..
T Consensus 81 C~~~~~~~~l~~~-~~~~I~~i~~~~~--~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 156 (386)
T 3v65_B 81 CKALGPEPVLLFA-NRIDIRQVLPHRS--EYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 156 (386)
T ss_dssp EEECSSCCEEEEE-CBSCEEEECTTSC--CCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS
T ss_pred ECCccccceeEee-cCccceeeccCCC--cEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC
Confidence 4444443344433 3356777787764 2222233 23457899999755555544 4667898999865543332222
Q ss_pred cCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC-CeEEEE
Q psy6859 87 DFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS-SHVHIY 165 (261)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~i~i~ 165 (261)
.......+.+.+.+..++.. -...+.|.+.++........+.. .......++++|.+.. ++++.... +.|..+
T Consensus 157 ~~~~p~glavd~~~g~lY~~---d~~~~~I~~~~~dg~~~~~l~~~--~l~~P~giavdp~~g~-ly~td~~~~~~I~r~ 230 (386)
T 3v65_B 157 GLESPGGLAVDWVHDKLYWT---DSGTSRIEVANLDGAHRKVLLWQ--SLEKPRAIALHPMEGT-IYWTDWGNTPRIEAS 230 (386)
T ss_dssp SCSCCCCEEEETTTTEEEEE---ETTTTEEEECBTTSCSCEEEECS--SCSCEEEEEEETTTTE-EEEEECSSSCEEEEE
T ss_pred CCCCccEEEEEeCCCeEEEE---cCCCCeEEEEeCCCCceEEeecC--CCCCCcEEEEEcCCCe-EEEeccCCCCEEEEE
Confidence 22222345555544444333 24567888888876543333221 2235678899987664 34554445 788888
Q ss_pred EccCCCccceeeccCcccCeEEEEEcCCCCEEEE-EcCCCeEEEeeccc
Q psy6859 166 DCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVS-VDKAGILEYWSGYK 213 (261)
Q Consensus 166 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~ 213 (261)
++. +.....+....-...+.|+++|++..|+. -...+.|..+|+..
T Consensus 231 ~~d--G~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG 277 (386)
T 3v65_B 231 SMD--GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 277 (386)
T ss_dssp ETT--SCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS
T ss_pred eCC--CCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 886 33333332123345789999987766644 44667899998753
No 271
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.42 E-value=0.00022 Score=53.64 Aligned_cols=186 Identities=14% Similarity=0.143 Sum_probs=109.4
Q ss_pred CCCEEEEEeCCCcEEEEEccccceeeeeeccCcceeEEEEee----cCCceeeeeeecCC--CCeEEEEEcC--CCceee
Q psy6859 57 NGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHY----LGDAIPTAAVSDQD--SSRVHIYDCK--GNDMIN 128 (261)
Q Consensus 57 ~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~--d~~i~i~d~~--~~~~~~ 128 (261)
...+++.....+-+.+||+ +|+.+..+... ...-+.+-+ .++.+-.+.++... +++|.+|++. ++ .+.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~g--~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNTG--KLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-TLQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECCS--CEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-CEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccCC--CcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-cee
Confidence 4456777778889999999 88888887632 122222222 33333233344455 7899999774 33 344
Q ss_pred EEee---c--CCcceEEEEEE--eCCCCceEEEEecCCCeEEEEEccC------CCccceeeccCcccCeEEEEEcCCCC
Q psy6859 129 MIKL---D--FTPLTVECIHY--LGDAIPTAAVSDQDSSHVHIYDCKG------NGTPLHVLDRLHTKPVVLIKFNPIYQ 195 (261)
Q Consensus 129 ~~~~---~--~~~~~~~~~~~--~~~~~~~~~~~~~~d~~i~i~d~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~ 195 (261)
.+.. . .....+..+++ +|......++....+|.+..|++.. +.+.+++|. ....+..+...+...
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~--lgsq~EgcvvDd~~g 192 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK--MNSQTEGMAADDEYG 192 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE--CSSCEEEEEEETTTT
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec--CCCCcceEEEcCCCC
Confidence 4411 0 11123444555 6654323355556679999999842 336677885 456788999999889
Q ss_pred EEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecC-C-CccceeeeeE--CCCCc-eEEEee
Q psy6859 196 VVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFA-K-NKTYPSGLSF--SPDGN-KFVTIS 258 (261)
Q Consensus 196 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~--s~~~~-~l~s~~ 258 (261)
.|+.+-++.-|..++.+...- .+.+.+..+. + -...+..|+. .++++ +|++++
T Consensus 193 ~Lyv~eEd~GIw~~da~p~~~----------~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSs 250 (355)
T 3amr_A 193 RLYIAEEDEAIWKFSAEPDGG----------SNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASS 250 (355)
T ss_dssp EEEEEETTTEEEEEECSTTSC----------SCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEE
T ss_pred eEEEecccceEEEEeCCcCCC----------CCceEEEEecCCccccCcceEEEEecCCCCEEEEEEc
Confidence 999999887665555432100 1123333332 2 2236777777 55666 666655
No 272
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.38 E-value=0.00011 Score=61.94 Aligned_cols=195 Identities=13% Similarity=0.102 Sum_probs=105.4
Q ss_pred CeEEEEEc-C-CCeEEEec-----CCCeEEEEeccCC-ceeeeEEeeccccceeEEEEeeCCCEEEEEeCC-----CcEE
Q psy6859 5 PITHVVVT-K-TDFVITAS-----NDGHIKFWKKQEE-GIEFVKHFRSHLGVIHSICTNYNGTLLCTVASD-----KAMK 71 (261)
Q Consensus 5 ~v~~~~~~-~-~~~l~s~~-----~d~~i~iw~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----g~v~ 71 (261)
.+...+|| | +++||-+. ...+|+++|+.++ . .....+. .....++|+||++.|+....+ ..|.
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~-~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~ 250 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQ-TIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVW 250 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTC-CCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCE-eCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEE
Confidence 57788999 9 88777432 2235999999876 3 1111122 224578999999888877665 2578
Q ss_pred EEEccccce--eeeeeccC-cceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCc-ee--eEEeecCCcceEEEEEEe
Q psy6859 72 VFDVINFDM--INMIKLDF-TPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGND-MI--NMIKLDFTPLTVECIHYL 145 (261)
Q Consensus 72 ~wd~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~-~~--~~~~~~~~~~~~~~~~~~ 145 (261)
++++.+++. ...+.... .......++++++.++..... .....|.++|+.++. .. ..+... .......+.|+
T Consensus 251 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~-~~~~~l~~~d~~~~~~~~~~~~l~~~-~~~~~~s~~~~ 328 (751)
T 2xe4_A 251 RHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQS-PETAEVHLLDLRKGNAHNTLEIVRPR-EKGVRYDVQMH 328 (751)
T ss_dssp EEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEEC-SSCEEEEEEESSSCTTCCCEEESSCC-CTTCCEEEEEE
T ss_pred EEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecC-CCCceEEEEECCCCCCCceeEEeecC-CCCceEEEeee
Confidence 888876642 22222111 223345678888877765322 345678899998752 12 222211 12233344443
Q ss_pred CCCCceEEEEecC---CCeEEEEEccCCCcccee-eccCccc--CeEEEEEcCCCCEEEEEcCCCeEEEe
Q psy6859 146 GDAIPTAAVSDQD---SSHVHIYDCKGNGTPLHV-LDRLHTK--PVVLIKFNPIYQVVVSVDKAGILEYW 209 (261)
Q Consensus 146 ~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~-~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iw 209 (261)
. +..+++.+... ...|..+|+. +...... +. .+.. .+..+.+. .+.++++...++..++|
T Consensus 329 ~-g~~l~~~t~~~~a~~~~L~~~d~~-~~~~~~~~li-~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 329 G-TSHLVILTNEGGAVNHKLLIAPRG-QPSDWSHVLV-DHSEDVFMESIAVR-SNYLVVAGRRAGLTRIW 394 (751)
T ss_dssp T-TTEEEEEECTTTCTTCEEEEEETT-STTCCCCEEE-CCCSSEEEEEEEEC-SSEEEEEEEETTEEEEE
T ss_pred e-CCEEEEEeCCCCCCCcEEEEEcCC-CcccceeeEE-CCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEE
Confidence 3 44333444321 2356667765 3222222 22 3333 34555554 23355666677765544
No 273
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.37 E-value=0.00036 Score=53.13 Aligned_cols=196 Identities=9% Similarity=0.007 Sum_probs=113.9
Q ss_pred eEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEE-eCCCcEEEEEccccceeeee
Q psy6859 6 ITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTV-ASDKAMKVFDVINFDMINMI 84 (261)
Q Consensus 6 v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~v~~wd~~~~~~~~~~ 84 (261)
-+|.+..+..+|+.+. ...|+..+++.. .....+.. ...+..++|++.+..|+.+ ...+.|..+++........+
T Consensus 36 ~~C~~~~~~~~ll~~~-~~~I~~i~~~g~--~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~ 111 (349)
T 3v64_C 36 RSCKALGPEPVLLFAN-RIDIRQVLPHRS--EYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV 111 (349)
T ss_dssp SCEEESSSCCEEEEEC-BSCEEEECTTSC--CEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred CcccccccCceeEeec-ccceEEEeCCCC--eeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE
Confidence 4455544433444333 345777777654 23233332 3457899999765555554 45678988998755433322
Q ss_pred eccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC-CeEE
Q psy6859 85 KLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS-SHVH 163 (261)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~i~ 163 (261)
.........+.+.+.+..++.. -...+.|.+.++........+.. .......++++|.+.. ++++.... +.|.
T Consensus 112 ~~~~~~p~glavd~~~g~ly~~---d~~~~~I~~~~~dG~~~~~l~~~--~l~~P~~iavdp~~g~-ly~td~~~~~~I~ 185 (349)
T 3v64_C 112 STGLESPGGLAVDWVHDKLYWT---DSGTSRIEVANLDGAHRKVLLWQ--SLEKPRAIALHPMEGT-IYWTDWGNTPRIE 185 (349)
T ss_dssp CSSCSCCCEEEEETTTTEEEEE---ETTTTEEEEEETTSCSCEEEECT--TCSCEEEEEEETTTTE-EEEEECSSSCEEE
T ss_pred eCCCCCccEEEEecCCCeEEEE---cCCCCeEEEEcCCCCceEEEEeC--CCCCcceEEEecCcCe-EEEeccCCCCEEE
Confidence 2222222345555545544433 25677899999876543332221 2235588999986654 35555555 8899
Q ss_pred EEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEE-cCCCeEEEeeccc
Q psy6859 164 IYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSV-DKAGILEYWSGYK 213 (261)
Q Consensus 164 i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~ 213 (261)
.+++. +.....+....-...+.|+++|++..|+.+ ...+.|..+|+..
T Consensus 186 r~~~d--G~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 186 ASSMD--GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp EEETT--SCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEeCC--CCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 88886 333333321234457899999877766544 4667899998753
No 274
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.36 E-value=0.00048 Score=54.08 Aligned_cols=154 Identities=8% Similarity=0.047 Sum_probs=90.5
Q ss_pred CeEEEEEcC--CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeC-CC----cEEEEEccc
Q psy6859 5 PITHVVVTK--TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVAS-DK----AMKVFDVIN 77 (261)
Q Consensus 5 ~v~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg----~v~~wd~~~ 77 (261)
....|+++| +..|..+...+.|+.++.+.. ... .+.........++|++++++|+.+.. ++ .+...+ ..
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~--~v~-~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~~ 213 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKE--YVS-TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-RE 213 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTT--EEE-EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-GG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCC--EEE-EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-CC
Confidence 346788885 244544444488888888775 322 22223455789999999996666554 22 233333 34
Q ss_pred ccee--eeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEE
Q psy6859 78 FDMI--NMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVS 155 (261)
Q Consensus 78 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (261)
+... ..+..... ...+.+.+....++.. -..++.|..++..++......... .......++++|++.+ ++++
T Consensus 214 g~~~~~~~l~~~~~-p~giavdp~~g~lyv~---d~~~~~V~~~~~~~~~~~~~~~~~-~~~~P~gia~~pdG~~-lyv~ 287 (430)
T 3tc9_A 214 SGFKVITELTKGQN-CNGAETHPINGELYFN---SWNAGQVFRYDFTTQETTPLFTIQ-DSGWEFHIQFHPSGNY-AYIV 287 (430)
T ss_dssp GTSCSEEEEEECSS-CCCEEECTTTCCEEEE---ETTTTEEEEEETTTTEEEEEEECS-SSSCCEEEEECTTSSE-EEEE
T ss_pred CceeeeeeeccCCC-ceEEEEeCCCCEEEEE---ECCCCEEEEEECCCCcEEEEEEcC-CCCcceeEEEcCCCCE-EEEE
Confidence 4332 22221222 2345566633334332 146788999998876543333322 1224578999999974 3666
Q ss_pred ecCCCeEEEEEcc
Q psy6859 156 DQDSSHVHIYDCK 168 (261)
Q Consensus 156 ~~~d~~i~i~d~~ 168 (261)
....+.|..++..
T Consensus 288 d~~~~~I~~~~~d 300 (430)
T 3tc9_A 288 VVNQHYILRSDYD 300 (430)
T ss_dssp ETTTTEEEEEEEE
T ss_pred ECCCCEEEEEeCC
Confidence 6778899998876
No 275
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.36 E-value=6.6e-05 Score=63.30 Aligned_cols=159 Identities=8% Similarity=-0.008 Sum_probs=92.1
Q ss_pred ceeEEEEe-eCCCEEEEEeC-CC----cEEEEEcccc-ceeee-eeccCcceeEEEEeecCCceeeeeeecCC-CCeEEE
Q psy6859 48 VIHSICTN-YNGTLLCTVAS-DK----AMKVFDVINF-DMINM-IKLDFTPLTVECIHYLGDAIPTAAVSDQD-SSRVHI 118 (261)
Q Consensus 48 ~v~~~~~~-~~~~~l~s~~~-dg----~v~~wd~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-d~~i~i 118 (261)
.+...+|+ |||++|+-+.. +| +|+++|+.++ +.+.. +. . ......++++++.++........ ...|..
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~--~-~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS--G-TNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE--E-ECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc--C-ceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 57788999 99998875543 33 4999999988 63321 11 1 12345678888877766221111 136888
Q ss_pred EEcCCCcee--eEEeecCCcceEEEEEEeCCCCceEEEEec-CCCeEEEEEccCCCc-cc--eeeccCcccCeEEEEEcC
Q psy6859 119 YDCKGNDMI--NMIKLDFTPLTVECIHYLGDAIPTAAVSDQ-DSSHVHIYDCKGNGT-PL--HVLDRLHTKPVVLIKFNP 192 (261)
Q Consensus 119 ~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~-~~--~~~~~~~~~~v~~~~~~~ 192 (261)
+++.++... ..+... .......+.++|++.++++.+.. ....|+++|+. ++. .. ..+.........++.|+.
T Consensus 252 ~~lgt~~~~~~lv~~~~-~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~-~~~~~~~~~~l~~~~~~~~~s~~~~~ 329 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEH-NPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLR-KGNAHNTLEIVRPREKGVRYDVQMHG 329 (751)
T ss_dssp EETTSCGGGCEEEEECC-CTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESS-SCTTCCCEEESSCCCTTCCEEEEEET
T ss_pred EECCCCchhcEEEEecC-CCceEEEEEECCCCCEEEEEecCCCCceEEEEECC-CCCCCceeEEeecCCCCceEEEeeee
Confidence 888876432 222222 22345678999999976554433 24468888987 432 22 334313445556666655
Q ss_pred CCCEEEEEcCC--C--eEEEeec
Q psy6859 193 IYQVVVSVDKA--G--ILEYWSG 211 (261)
Q Consensus 193 ~~~~l~~~~~d--g--~i~iwd~ 211 (261)
.+.+++....+ + .|..+|+
T Consensus 330 g~~l~~~t~~~~a~~~~L~~~d~ 352 (751)
T 2xe4_A 330 TSHLVILTNEGGAVNHKLLIAPR 352 (751)
T ss_dssp TTEEEEEECTTTCTTCEEEEEET
T ss_pred CCEEEEEeCCCCCCCcEEEEEcC
Confidence 44455555444 3 4555555
No 276
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.34 E-value=0.00039 Score=51.88 Aligned_cols=188 Identities=10% Similarity=0.055 Sum_probs=102.5
Q ss_pred CeEEEEEcC-CCeEEEecCC-C-eEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc-e
Q psy6859 5 PITHVVVTK-TDFVITASND-G-HIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD-M 80 (261)
Q Consensus 5 ~v~~~~~~~-~~~l~s~~~d-~-~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~-~ 80 (261)
....+++.+ ++++++.... + .|..++..++....+..+. .......++..+++..+++-..++.|..+|...++ .
T Consensus 73 ~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~-~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~ 151 (306)
T 2p4o_A 73 KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLP-DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGS 151 (306)
T ss_dssp EEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECT-TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred CceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCC-CccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEe
Confidence 467889998 7765554332 2 4656666655333222221 11223455555555445554468888888876542 1
Q ss_pred eeee-------eccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCC-Cce--eeEEeecCCcceEEEEEEeCCCCc
Q psy6859 81 INMI-------KLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKG-NDM--INMIKLDFTPLTVECIHYLGDAIP 150 (261)
Q Consensus 81 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 150 (261)
+... ...........++++++.++.. -...+.|..+++.. ++. ...+... .....+++++++.
T Consensus 152 v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~---d~~~~~I~~~~~~~~g~~~~~~~~~~~---~~P~gi~vd~dG~- 224 (306)
T 2p4o_A 152 IWLEHPMLARSNSESVFPAANGLKRFGNFLYVS---NTEKMLLLRIPVDSTDKPGEPEIFVEQ---TNIDDFAFDVEGN- 224 (306)
T ss_dssp EEEECGGGSCSSTTCCSCSEEEEEEETTEEEEE---ETTTTEEEEEEBCTTSCBCCCEEEEES---CCCSSEEEBTTCC-
T ss_pred EEEECCccccccccCCCCcCCCcCcCCCEEEEE---eCCCCEEEEEEeCCCCCCCccEEEecc---CCCCCeEECCCCC-
Confidence 1100 0000101112236677655443 25678999999875 321 1112111 1235678888885
Q ss_pred eEEEEecCCCeEEEEEccCCCcc--ceeeccCcccCeEEEEEc---CCCCEEEEEcCCC
Q psy6859 151 TAAVSDQDSSHVHIYDCKGNGTP--LHVLDRLHTKPVVLIKFN---PIYQVVVSVDKAG 204 (261)
Q Consensus 151 ~~~~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~dg 204 (261)
++++....+.|.++|.. ++. +..+. ..-...++++|. |+++.|+..+..+
T Consensus 225 -l~va~~~~~~V~~~~~~--G~~~~~~~~~-~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 225 -LYGATHIYNSVVRIAPD--RSTTIIAQAE-QGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp -EEEECBTTCCEEEECTT--CCEEEEECGG-GTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred -EEEEeCCCCeEEEECCC--CCEEEEeecc-cccCCceEEEEecccCCCCEEEEECCCC
Confidence 36666667889999864 444 22343 233568999998 8887776555433
No 277
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.28 E-value=0.00071 Score=52.57 Aligned_cols=186 Identities=10% Similarity=0.004 Sum_probs=108.9
Q ss_pred eEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEe-CCCcEEEEEccccc----eeeeeeccCcc
Q psy6859 16 FVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVA-SDKAMKVFDVINFD----MINMIKLDFTP 90 (261)
Q Consensus 16 ~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~v~~wd~~~~~----~~~~~~~~~~~ 90 (261)
+|+.+. ...|+..+++... ....+. ....+..++|++.+..|+.+. ..+.|..+++.... ....+......
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~--~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~ 160 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSE--YTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA 160 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCS--CEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSC
T ss_pred eeEEec-cceeEEEccCCcc--eeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCC
Confidence 344333 4678888887652 222222 345678999998655555554 56788888876421 22222212222
Q ss_pred eeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEe-cCCCeEEEEEccC
Q psy6859 91 LTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSD-QDSSHVHIYDCKG 169 (261)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~i~i~d~~~ 169 (261)
...+.+.+.+..++.. -...+.|.+.++........+.. .......++++|....+ +++- +..+.|...++.
T Consensus 161 p~glavD~~~~~lY~~---d~~~~~I~~~~~~g~~~~~l~~~--~~~~P~~iavdp~~g~l-y~td~~~~~~I~~~~~d- 233 (400)
T 3p5b_L 161 PDGLAVDWIHSNIYWT---DSVLGTVSVADTKGVKRKTLFRE--NGSKPRAIVVDPVHGFM-YWTDWGTPAKIKKGGLN- 233 (400)
T ss_dssp EEEEEEETTTTEEEEE---ETTTTEEEEECTTTCSEEEEEEC--SSCCEEEEEEETTTTEE-EEEECSSSCCEEEEETT-
T ss_pred cccEEEEecCCceEEE---ECCCCeEEEEeCCCCceEEEEeC--CCCCcceEEEecccCeE-EEEeCCCCCEEEEEeCC-
Confidence 3445555544444433 25678899999887654444432 22346889999876543 4443 334788888886
Q ss_pred CCccceeeccCcccCeEEEEEcCCCCEEEEE-cCCCeEEEeeccc
Q psy6859 170 NGTPLHVLDRLHTKPVVLIKFNPIYQVVVSV-DKAGILEYWSGYK 213 (261)
Q Consensus 170 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~ 213 (261)
+.....+....-...+.|+++|++..|+.+ ...+.|..+|+..
T Consensus 234 -G~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG 277 (400)
T 3p5b_L 234 -GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 277 (400)
T ss_dssp -SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred -CCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC
Confidence 333333321233567999999887777555 4567899998753
No 278
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.24 E-value=0.00088 Score=52.04 Aligned_cols=203 Identities=5% Similarity=-0.072 Sum_probs=117.6
Q ss_pred CCeEEEEEcC-CC-eEEEecCCCeEEEEeccCCc--eeeeEEeeccccceeEEEEee-CCCEEEEEeCCCcEEEEEcccc
Q psy6859 4 SPITHVVVTK-TD-FVITASNDGHIKFWKKQEEG--IEFVKHFRSHLGVIHSICTNY-NGTLLCTVASDKAMKVFDVINF 78 (261)
Q Consensus 4 ~~v~~~~~~~-~~-~l~s~~~d~~i~iw~~~~~~--~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~~wd~~~~ 78 (261)
..+..|+|++ ++ ++++-...+.|..++++... ......+.........+++.+ .++++++-...+.|.+.++...
T Consensus 112 ~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~ 191 (400)
T 3p5b_L 112 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 191 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTC
T ss_pred CcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCC
Confidence 4567889987 44 45555667888888876521 012222332334567899987 4445555556788999988654
Q ss_pred ceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecC
Q psy6859 79 DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD 158 (261)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (261)
.....+.........+.+.+.+..++..-. +..+.|...++........+.. .-.....++++++... ++++-..
T Consensus 192 ~~~~l~~~~~~~P~~iavdp~~g~ly~td~--~~~~~I~~~~~dG~~~~~~~~~--~l~~P~glavd~~~~~-lY~aD~~ 266 (400)
T 3p5b_L 192 KRKTLFRENGSKPRAIVVDPVHGFMYWTDW--GTPAKIKKGGLNGVDIYSLVTE--NIQWPNGITLDLLSGR-LYWVDSK 266 (400)
T ss_dssp SEEEEEECSSCCEEEEEEETTTTEEEEEEC--SSSCCEEEEETTSCSCEEEECS--SCSCEEEEEEETTTTE-EEEEETT
T ss_pred ceEEEEeCCCCCcceEEEecccCeEEEEeC--CCCCEEEEEeCCCCccEEEEEC--CCCceEEEEEEeCCCE-EEEEECC
Confidence 433333323333445666665555554311 2246888888876544333322 2235688999987764 4566667
Q ss_pred CCeEEEEEccCCCccceeecc--CcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccc
Q psy6859 159 SSHVHIYDCKGNGTPLHVLDR--LHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQ 214 (261)
Q Consensus 159 d~~i~i~d~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 214 (261)
.+.|..+|+. . .....+.. ..-....++++. .+.++.+-...+.|..+|..++
T Consensus 267 ~~~I~~~d~d-G-~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 267 LHSISSIDVN-G-GNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 321 (400)
T ss_dssp TTEEEEEETT-S-CCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSC
T ss_pred CCEEEEEeCC-C-CccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCC
Confidence 8899999986 3 33333320 122345677773 3345556667778888885443
No 279
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.23 E-value=2.5e-05 Score=65.11 Aligned_cols=200 Identities=6% Similarity=-0.062 Sum_probs=106.2
Q ss_pred eEEEEEcC-CCeEE-EecCCCeEEEEeccCCc--eeeeEEeeccccceeEEEEeeC-CCEEEEEeCCCcEEEEEccccce
Q psy6859 6 ITHVVVTK-TDFVI-TASNDGHIKFWKKQEEG--IEFVKHFRSHLGVIHSICTNYN-GTLLCTVASDKAMKVFDVINFDM 80 (261)
Q Consensus 6 v~~~~~~~-~~~l~-s~~~d~~i~iw~~~~~~--~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~v~~wd~~~~~~ 80 (261)
+..|+|.+ ++.|+ +-...+.|+.+++.+.. ......+.........|++.+. ++++++-...+.|.++++.....
T Consensus 408 p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~ 487 (699)
T 1n7d_A 408 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR 487 (699)
T ss_dssp CCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCE
T ss_pred eEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCce
Confidence 45678887 54444 44556788888876410 0111122111223567888754 44445545667899999764433
Q ss_pred eeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCC
Q psy6859 81 INMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS 160 (261)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 160 (261)
...+.........+.+.+.+..++..-. +..+.|..+++........+.. .......++++|++..+ +++-...+
T Consensus 488 ~~l~~~~~~~P~giavDp~~g~ly~td~--~~~~~I~~~~~dG~~~~~l~~~--~l~~PnGlavd~~~~~L-Y~aD~~~~ 562 (699)
T 1n7d_A 488 KTLFREQGSKPRAIVVDPVHGFMYWTDW--GTPAKIKKGGLNGVDIYSLVTE--NIQWPNGITLDLLSGRL-YWVDSKLH 562 (699)
T ss_dssp EEECCCSSCCCCCEECCSSSSCCEECCC--SSSCCEEBCCSSSCCCCEESCS--SCSSCCCEEECTTTCCE-EEEETTTT
T ss_pred EEEEeCCCCCcceEEEccCCCcEEEccc--CCCCeEEEEeCCCCCeeEEEeC--CCCCccEEEEeccCCEE-EEEecCCC
Confidence 3222222222334556665555544310 1236788777765432222111 11234678999876653 56666788
Q ss_pred eEEEEEccCCCccceeecc--CcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859 161 HVHIYDCKGNGTPLHVLDR--LHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK 213 (261)
Q Consensus 161 ~i~i~d~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 213 (261)
.|..+|+. .. ....+.. ..-.....|++..+ .++++....+.|..++..+
T Consensus 563 ~I~~~d~d-G~-~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~ 614 (699)
T 1n7d_A 563 SISSIDVN-GG-NRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLT 614 (699)
T ss_dssp EEEEECSS-SS-CCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTT
T ss_pred eEEEEccC-CC-ceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccC
Confidence 99999986 32 2233310 11223445666544 4445555678899888644
No 280
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.22 E-value=0.00079 Score=50.55 Aligned_cols=200 Identities=7% Similarity=-0.074 Sum_probs=117.5
Q ss_pred eEEEEEcC--CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeC-CCEEEEEeCCCcEEEEEccccceee
Q psy6859 6 ITHVVVTK--TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYN-GTLLCTVASDKAMKVFDVINFDMIN 82 (261)
Q Consensus 6 v~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~v~~wd~~~~~~~~ 82 (261)
..+++|.+ +.++.+-...+.|..++.+.... ....+...-.....+++.+. ++++++-...+.|.++++.......
T Consensus 37 ~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~-~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 115 (318)
T 3sov_A 37 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES-VQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 115 (318)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEETTSSSC-CCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred cEEEEEEeCCCEEEEEECCCCcEEEEEccCCCc-eEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence 45788887 44556666778888888876421 11122222235678999874 4445555567789999985432222
Q ss_pred eeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeE
Q psy6859 83 MIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHV 162 (261)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 162 (261)
.+.........+.+.+.+..++..- .+..+.|...++........+.. .-.....+++++++.. ++++-...+.|
T Consensus 116 l~~~~~~~P~giavdp~~g~ly~td--~~~~~~I~r~~~dG~~~~~~~~~--~l~~Pnglavd~~~~~-lY~aD~~~~~I 190 (318)
T 3sov_A 116 LFWQELDQPRAIALDPSSGFMYWTD--WGEVPKIERAGMDGSSRFIIINS--EIYWPNGLTLDYEEQK-LYWADAKLNFI 190 (318)
T ss_dssp EECSSCSSEEEEEEEGGGTEEEEEE--CSSSCEEEEEETTSCSCEEEECS--SCSCEEEEEEETTTTE-EEEEETTTTEE
T ss_pred EEeCCCCCccEEEEeCCCCEEEEEe--cCCCCEEEEEEcCCCCeEEEEEC--CCCCccEEEEeccCCE-EEEEECCCCEE
Confidence 2222222334556666555554431 02357888888875433222221 2234578999987664 46666778899
Q ss_pred EEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccc
Q psy6859 163 HIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQ 214 (261)
Q Consensus 163 ~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 214 (261)
..+|+. . ...+.+..........+++.. +.++.+-...+.|..++..++
T Consensus 191 ~~~d~d-G-~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G 239 (318)
T 3sov_A 191 HKSNLD-G-TNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTG 239 (318)
T ss_dssp EEEETT-S-CSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred EEEcCC-C-CceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCC
Confidence 999986 3 333333212344567788753 345555667788999987554
No 281
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.21 E-value=0.00081 Score=50.43 Aligned_cols=179 Identities=11% Similarity=0.005 Sum_probs=104.8
Q ss_pred CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEE-eCCCcEEEEEccc---cceeee-eeccCcceeEEEEee
Q psy6859 24 GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTV-ASDKAMKVFDVIN---FDMINM-IKLDFTPLTVECIHY 98 (261)
Q Consensus 24 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~v~~wd~~~---~~~~~~-~~~~~~~~~~~~~~~ 98 (261)
..|+..+++.. +....+. ....+..++|++.++.|+.+ ...+.|..+++.. +..... +.........+.+.+
T Consensus 10 ~~I~~i~~~~~--~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~ 86 (316)
T 1ijq_A 10 HEVRKMTLDRS--EYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 86 (316)
T ss_dssp SSEEEEETTSC--CCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred CeEEEEECCCc--ceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEee
Confidence 56888888875 3333333 23457899999865555544 4568899999865 122222 221212223455554
Q ss_pred cCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC-CeEEEEEccCCCccceee
Q psy6859 99 LGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS-SHVHIYDCKGNGTPLHVL 177 (261)
Q Consensus 99 ~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~i~i~d~~~~~~~~~~~ 177 (261)
.+..++.. -...+.|.++++........+.. .......++.+|.+..+ +++.... +.|..+++. +.....+
T Consensus 87 ~~~~ly~~---d~~~~~I~~~~~~g~~~~~~~~~--~~~~P~~iavdp~~g~l-y~~d~~~~~~I~~~~~d--G~~~~~~ 158 (316)
T 1ijq_A 87 IHSNIYWT---DSVLGTVSVADTKGVKRKTLFRE--NGSKPRAIVVDPVHGFM-YWTDWGTPAKIKKGGLN--GVDIYSL 158 (316)
T ss_dssp TTTEEEEE---ETTTTEEEEEETTSSSEEEEEEC--TTCCEEEEEEETTTTEE-EEEECSSSCEEEEEETT--SCCEEEE
T ss_pred cCCeEEEE---ECCCCEEEEEeCCCCceEEEEEC--CCCCcceEEeCCCCCEE-EEEccCCCCeEEEEcCC--CCCeEEE
Confidence 44444432 25678999999876544333332 22356789999866543 4444333 788888875 3333333
Q ss_pred ccCcccCeEEEEEcCCCCEEEEE-cCCCeEEEeeccc
Q psy6859 178 DRLHTKPVVLIKFNPIYQVVVSV-DKAGILEYWSGYK 213 (261)
Q Consensus 178 ~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~ 213 (261)
....-...+.|+++|++..|+.+ ...+.|..+|+..
T Consensus 159 ~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 159 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 195 (316)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence 21233567899999987766544 4667899999853
No 282
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.20 E-value=0.0015 Score=53.30 Aligned_cols=162 Identities=13% Similarity=0.009 Sum_probs=90.9
Q ss_pred CCeEEEecCCCeEEEEeccCCceeeeEEeeccc--c--cee-EEEEeeC---CC-EEEEEe------CCCcEEEEEcccc
Q psy6859 14 TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHL--G--VIH-SICTNYN---GT-LLCTVA------SDKAMKVFDVINF 78 (261)
Q Consensus 14 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~--~--~v~-~~~~~~~---~~-~l~s~~------~dg~v~~wd~~~~ 78 (261)
+..++.++.|+.|.-+|..++ +.+....... . .+. .-....+ ++ .++.++ .++.|.-+|..+|
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG--~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG 194 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTG--KVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTG 194 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSC--CEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTC
T ss_pred CCEEEEEeCCCEEEEEECCCC--CEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCC
Confidence 456777888999999999887 4444433221 0 111 1111122 33 555554 3789999999999
Q ss_pred ceeeeeeccCcce-----------------------------------------eEEEEeecCCceeeeeeec-------
Q psy6859 79 DMINMIKLDFTPL-----------------------------------------TVECIHYLGDAIPTAAVSD------- 110 (261)
Q Consensus 79 ~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~s~------- 110 (261)
+.+.......... ....+.+....++...-.+
T Consensus 195 ~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~ 274 (582)
T 1flg_A 195 EEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWA 274 (582)
T ss_dssp CEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGG
T ss_pred CEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcc
Confidence 8877654321000 0112222233333221000
Q ss_pred ---CC------C----CeEEEEEcCCCceeeEEeecCCc-------ceEEEEEEe-CCCCc-eEEEEecCCCeEEEEEcc
Q psy6859 111 ---QD------S----SRVHIYDCKGNDMINMIKLDFTP-------LTVECIHYL-GDAIP-TAAVSDQDSSHVHIYDCK 168 (261)
Q Consensus 111 ---~~------d----~~i~i~d~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~~-~~~~~~~~d~~i~i~d~~ 168 (261)
.. | +.|.-+|.++++.+-.++...+. ....-+... .++.. .+++.++.+|.++++|..
T Consensus 275 r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~ 354 (582)
T 1flg_A 275 RTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRS 354 (582)
T ss_dssp GSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETT
T ss_pred cccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECC
Confidence 00 2 68999999999988777653221 111112222 34431 247778899999999998
Q ss_pred CCCccceeec
Q psy6859 169 GNGTPLHVLD 178 (261)
Q Consensus 169 ~~~~~~~~~~ 178 (261)
+++++..++
T Consensus 355 -tG~~lw~~~ 363 (582)
T 1flg_A 355 -NGKLQNAFP 363 (582)
T ss_dssp -TCCEEEEEE
T ss_pred -CCCEecccc
Confidence 888876654
No 283
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.20 E-value=0.00087 Score=50.26 Aligned_cols=201 Identities=5% Similarity=-0.087 Sum_probs=116.2
Q ss_pred CeEEEEEcC-CC-eEEEecCCCeEEEEeccCCc--eeeeEEeeccccceeEEEEeeCCC-EEEEEeCCCcEEEEEccccc
Q psy6859 5 PITHVVVTK-TD-FVITASNDGHIKFWKKQEEG--IEFVKHFRSHLGVIHSICTNYNGT-LLCTVASDKAMKVFDVINFD 79 (261)
Q Consensus 5 ~v~~~~~~~-~~-~l~s~~~d~~i~iw~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~v~~wd~~~~~ 79 (261)
...+++|++ ++ ++++-...+.|..++.++.. ......+...-.....+++.+.+. ++++-...+.|.+.++....
T Consensus 31 ~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~ 110 (316)
T 1ijq_A 31 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK 110 (316)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS
T ss_pred ceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCc
Confidence 456889987 44 55565667899999887510 011222222223458899987444 44555567889999986433
Q ss_pred eeeeeeccCcceeEEEEeecCCceeeeeeecCC-CCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecC
Q psy6859 80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD-SSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD 158 (261)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (261)
....+.........+.+.+.+..++.. ... .+.|...++..... ..+.. ..-.....+++++++.. ++++-..
T Consensus 111 ~~~~~~~~~~~P~~iavdp~~g~ly~~---d~~~~~~I~~~~~dG~~~-~~~~~-~~~~~P~gla~d~~~~~-lY~~D~~ 184 (316)
T 1ijq_A 111 RKTLFRENGSKPRAIVVDPVHGFMYWT---DWGTPAKIKKGGLNGVDI-YSLVT-ENIQWPNGITLDLLSGR-LYWVDSK 184 (316)
T ss_dssp EEEEEECTTCCEEEEEEETTTTEEEEE---ECSSSCEEEEEETTSCCE-EEEEC-SSCSCEEEEEEETTTTE-EEEEETT
T ss_pred eEEEEECCCCCcceEEeCCCCCEEEEE---ccCCCCeEEEEcCCCCCe-EEEEE-CCCCCceEEEEeccCCE-EEEEECC
Confidence 322222222233455666655555443 122 37888888865433 22211 12235678999987764 4566667
Q ss_pred CCeEEEEEccCCCccceeecc--CcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccc
Q psy6859 159 SSHVHIYDCKGNGTPLHVLDR--LHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQ 214 (261)
Q Consensus 159 d~~i~i~d~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 214 (261)
.+.|..+|+. . ...+.+.. ..-.....+++. .+.++++-...+.|..++..++
T Consensus 185 ~~~I~~~d~d-g-~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g 239 (316)
T 1ijq_A 185 LHSISSIDVN-G-GNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 239 (316)
T ss_dssp TTEEEEEETT-S-CSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred CCeEEEEecC-C-CceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCC
Confidence 8899999986 3 33333320 122346778885 3555566667788988886543
No 284
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.13 E-value=0.0029 Score=53.53 Aligned_cols=180 Identities=11% Similarity=0.008 Sum_probs=105.0
Q ss_pred CCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEE-EEeCCCcEEEEEcccc----ceeeeeeccCcceeEEEEe
Q psy6859 23 DGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLC-TVASDKAMKVFDVINF----DMINMIKLDFTPLTVECIH 97 (261)
Q Consensus 23 d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~v~~wd~~~~----~~~~~~~~~~~~~~~~~~~ 97 (261)
...|+..++... .....+. ....+..|+|.+....|+ +-...+.|+.+++... .....+.........+++.
T Consensus 403 ~~~Ir~i~l~~~--~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD 479 (791)
T 3m0c_C 403 RHEVRKMTLDRS--EYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 479 (791)
T ss_dssp BSSEEEECTTSC--CCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEE
T ss_pred ccceeEeeccCC--cceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeee
Confidence 356777777654 2222222 345678899998544444 4445678888888642 1222222122223455666
Q ss_pred ecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEec-CCCeEEEEEccCCCcccee
Q psy6859 98 YLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ-DSSHVHIYDCKGNGTPLHV 176 (261)
Q Consensus 98 ~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~ 176 (261)
+.++.++.. -...+.|.+.++........+.. .......|+++|....+ +++-. ..+.|...++. +.....
T Consensus 480 ~~~~~LY~t---D~~~~~I~v~~ldG~~~~~l~~~--~l~~P~gIaVDp~~g~L-YwtD~g~~~~I~~~~~d--G~~~~~ 551 (791)
T 3m0c_C 480 WIHSNIYWT---DSVLGTVSVADTKGVKRKTLFRE--NGSKPRAIVVDPVHGFM-YWTDWGTPAKIKKGGLN--GVDIYS 551 (791)
T ss_dssp TTTTEEEEE---ETTTTEEEEEETTSSSEEEEEEC--TTCCEEEEEEETTTTEE-EEEECSSSCEEEEEETT--SCCEEE
T ss_pred ecCCcEEEE---ecCCCeEEEEeCCCCeEEEEEeC--CCCCcceEEEecCCCCE-EEecCCCCCeEEEEecC--CCceEE
Confidence 656555443 25678999999986654333332 22346889999876543 44443 33788888886 333333
Q ss_pred eccCcccCeEEEEEcCCCCEEEEEc-CCCeEEEeeccc
Q psy6859 177 LDRLHTKPVVLIKFNPIYQVVVSVD-KAGILEYWSGYK 213 (261)
Q Consensus 177 ~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~ 213 (261)
+....-...+.|++++.+..|+.+. ....|...++..
T Consensus 552 lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG 589 (791)
T 3m0c_C 552 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 589 (791)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence 3213335789999998777665554 567788888753
No 285
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.10 E-value=0.0032 Score=53.25 Aligned_cols=201 Identities=5% Similarity=-0.092 Sum_probs=113.8
Q ss_pred CeEEEEEcC-C-CeEEEecCCCeEEEEeccCCce--eeeEEeeccccceeEEEEeeCCCEEE-EEeCCCcEEEEEccccc
Q psy6859 5 PITHVVVTK-T-DFVITASNDGHIKFWKKQEEGI--EFVKHFRSHLGVIHSICTNYNGTLLC-TVASDKAMKVFDVINFD 79 (261)
Q Consensus 5 ~v~~~~~~~-~-~~l~s~~~d~~i~iw~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~v~~wd~~~~~ 79 (261)
.+..|+|.+ + .++++-...+.|+.+++..... .....+.........|++.+.++.|+ +-...+.|.+.++....
T Consensus 425 ~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~ 504 (791)
T 3m0c_C 425 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK 504 (791)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS
T ss_pred ceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCe
Confidence 456788887 4 4555656667888888765210 12223332334567899988665444 44567889999986443
Q ss_pred eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC
Q psy6859 80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS 159 (261)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 159 (261)
....+.........+.+.+....++..-. +..+.|...++........+.. .......|++++.... ++++-...
T Consensus 505 ~~~l~~~~l~~P~gIaVDp~~g~LYwtD~--g~~~~I~~~~~dG~~~~~lv~~--~l~~P~GLavD~~~~~-LYwaD~~~ 579 (791)
T 3m0c_C 505 RKTLFRENGSKPRAIVVDPVHGFMYWTDW--GTPAKIKKGGLNGVDIYSLVTE--NIQWPNGITLDLLSGR-LYWVDSKL 579 (791)
T ss_dssp EEEEEECTTCCEEEEEEETTTTEEEEEEC--SSSCEEEEEETTSCCEEEEECS--SCSCEEEEEEETTTTE-EEEEETTT
T ss_pred EEEEEeCCCCCcceEEEecCCCCEEEecC--CCCCeEEEEecCCCceEEEEeC--CCCCceEEEEecCCCe-EEEEeCCC
Confidence 32222222233455666666555554411 2237888889876544333332 2235678999977664 35566667
Q ss_pred CeEEEEEccCCCccceeeccC--cccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859 160 SHVHIYDCKGNGTPLHVLDRL--HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK 213 (261)
Q Consensus 160 ~~i~i~d~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 213 (261)
..|..+++. . .....+... .-....+|++..+ .++++-...+.|...|..+
T Consensus 580 ~~I~~~d~d-G-~~~~~v~~~~~~l~~P~glav~~~-~lYwtD~~~~~I~~~dk~t 632 (791)
T 3m0c_C 580 HSISSIDVN-G-GNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLT 632 (791)
T ss_dssp TEEEEEETT-S-CSCEEEEECTTTTSSEEEEEEETT-EEEEEETTTTEEEEEETTT
T ss_pred CcEEEEecC-C-CceEEEecCCCccCCCCEEEEeCC-EEEEEECCCCEEEEEeCCC
Confidence 889999986 3 333333201 1223456666432 3444545667787777544
No 286
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.08 E-value=0.00064 Score=53.37 Aligned_cols=156 Identities=9% Similarity=0.038 Sum_probs=91.1
Q ss_pred eeEEEEee-CCCEEEEEeCCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCC-eEEEEEcCCCce
Q psy6859 49 IHSICTNY-NGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS-RVHIYDCKGNDM 126 (261)
Q Consensus 49 v~~~~~~~-~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~-~i~i~d~~~~~~ 126 (261)
...|+++| ++..|+.+...+.|+.+|+..++...... .......+.+.++++.++..-..+.... .+..++.. +..
T Consensus 139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~ 216 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGF 216 (430)
T ss_dssp CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTS
T ss_pred CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cce
Confidence 47889997 34566666655788999987655443333 3333456677777775555421111112 34444433 222
Q ss_pred e--eEEeecCCcceEEEEEEeC-CCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEE-EEEcC
Q psy6859 127 I--NMIKLDFTPLTVECIHYLG-DAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVV-VSVDK 202 (261)
Q Consensus 127 ~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~ 202 (261)
. ..+.... ....++++| ++. ++++-..++.|..++.. .+................++|+|+|++| ++-..
T Consensus 217 ~~~~~l~~~~---~p~giavdp~~g~--lyv~d~~~~~V~~~~~~-~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~ 290 (430)
T 3tc9_A 217 KVITELTKGQ---NCNGAETHPINGE--LYFNSWNAGQVFRYDFT-TQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVN 290 (430)
T ss_dssp CSEEEEEECS---SCCCEEECTTTCC--EEEEETTTTEEEEEETT-TTEEEEEEECSSSSCCEEEEECTTSSEEEEEETT
T ss_pred eeeeeeccCC---CceEEEEeCCCCE--EEEEECCCCEEEEEECC-CCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECC
Confidence 2 2222212 235677888 454 36666678899999987 4433222221223457899999999955 45557
Q ss_pred CCeEEEeecc
Q psy6859 203 AGILEYWSGY 212 (261)
Q Consensus 203 dg~i~iwd~~ 212 (261)
.+.|..++..
T Consensus 291 ~~~I~~~~~d 300 (430)
T 3tc9_A 291 QHYILRSDYD 300 (430)
T ss_dssp TTEEEEEEEE
T ss_pred CCEEEEEeCC
Confidence 7889998765
No 287
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.03 E-value=0.0021 Score=48.41 Aligned_cols=227 Identities=10% Similarity=-0.015 Sum_probs=108.1
Q ss_pred CCeEEEEEcCCCeEEEecCCCeEEEEeccCCc--eeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccccee
Q psy6859 4 SPITHVVVTKTDFVITASNDGHIKFWKKQEEG--IEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMI 81 (261)
Q Consensus 4 ~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~ 81 (261)
..+.+|.|.++..++ ++.++.|.. ..+++ .+.+.....+.+.+..+.+.++++.++.+ .++.|.. ....++.-
T Consensus 80 ~~~~~i~~~~~~~~~-~g~~g~i~~--S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW 154 (327)
T 2xbg_A 80 YRFNSVSFQGNEGWI-VGEPPIMLH--TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNW 154 (327)
T ss_dssp CEEEEEEEETTEEEE-EEETTEEEE--ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSE
T ss_pred ccEEEEEecCCeEEE-EECCCeEEE--ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCC
Confidence 357889888754444 455565433 33222 22222111233456778887777665554 4554422 11223322
Q ss_pred eeeecc-CcceeEEEEeecCCceeeeeeecCCCCeEEE-EEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC
Q psy6859 82 NMIKLD-FTPLTVECIHYLGDAIPTAAVSDQDSSRVHI-YDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS 159 (261)
Q Consensus 82 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 159 (261)
...... ......+.+.+++..+ ++ +.++.+.. .|- .++.-..+.. ..+..+..+.+.+++. ++..+.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~-~~----g~~G~~~~S~d~-gG~tW~~~~~-~~~~~~~~~~~~~~g~---~~~~~~~ 224 (327)
T 2xbg_A 155 QALVQEAIGVMRNLNRSPSGEYV-AV----SSRGSFYSTWEP-GQTAWEPHNR-TTSRRLHNMGFTPDGR---LWMIVNG 224 (327)
T ss_dssp EEEECSCCCCEEEEEECTTSCEE-EE----ETTSSEEEEECT-TCSSCEEEEC-CSSSCEEEEEECTTSC---EEEEETT
T ss_pred EEeecCCCcceEEEEEcCCCcEE-EE----ECCCcEEEEeCC-CCCceeECCC-CCCCccceeEECCCCC---EEEEeCC
Confidence 222211 1223334444444333 22 34444433 332 1222222222 2344677888888875 3344457
Q ss_pred CeEEEEEccCCCccceeecc---CcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecC
Q psy6859 160 SHVHIYDCKGNGTPLHVLDR---LHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFA 236 (261)
Q Consensus 160 ~~i~i~d~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (261)
|.+++.+.. .++....+.. .....+.++.+.+++.+++++. +|.+ ++..+.+ ++-+.+....
T Consensus 225 G~~~~s~~D-~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG------------~tW~~~~~~~ 289 (327)
T 2xbg_A 225 GKIAFSDPD-NSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGG------------QTWQQDVDVK 289 (327)
T ss_dssp TEEEEEETT-EEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTT------------SSCEECGGGT
T ss_pred ceEEEecCC-CCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCC------------cccEEcCccC
Confidence 887776422 2333222220 1234588999998888777665 6655 3333221 1111111111
Q ss_pred CCccceeeeeECCCCceEEEeecCC
Q psy6859 237 KNKTYPSGLSFSPDGNKFVTISMDR 261 (261)
Q Consensus 237 ~~~~~v~~~~~s~~~~~l~s~~~Dg 261 (261)
.....+.++.|.++++.+ +++.+|
T Consensus 290 ~~~~~~~~v~~~~~~~~~-~~G~~G 313 (327)
T 2xbg_A 290 KVPSNFYKILFFSPDQGF-ILGQKG 313 (327)
T ss_dssp TSSSCCCEEEEEETTEEE-EECSTT
T ss_pred CCCCCeEEEEEECCCceE-EEcCCc
Confidence 223566788887666544 444443
No 288
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.02 E-value=0.0022 Score=48.34 Aligned_cols=191 Identities=9% Similarity=0.068 Sum_probs=97.7
Q ss_pred CCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEE-EEEcccccee
Q psy6859 4 SPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMK-VFDVINFDMI 81 (261)
Q Consensus 4 ~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~-~wd~~~~~~~ 81 (261)
..+..|.+.+ +..++.+ .++.| |...+.+.............+..+.+.+++++++.+. +|.+. -+|- .++.-
T Consensus 122 ~~~~~i~~~~~~~~~~~~-~~g~v--~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~-gG~tW 196 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMIT-NVGAI--YRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEP-GQTAW 196 (327)
T ss_dssp SCEEEEEEEETTEEEEEE-TTCCE--EEESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEET-TSSEEEEECT-TCSSC
T ss_pred CCeEEEEEECCCCEEEEe-CCccE--EEEcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCC-CCCce
Confidence 4567787766 5555554 45543 3333322233333334556788999999888776654 44443 3332 12222
Q ss_pred eeee-ccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeec--CCcceEEEEEEeCCCCceEEEEecC
Q psy6859 82 NMIK-LDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLD--FTPLTVECIHYLGDAIPTAAVSDQD 158 (261)
Q Consensus 82 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (261)
..+. ........+.+.+++. ++.+ +.+|.+.+.+...++.-..+... .....+..+.+.+++. +++++.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~g~-~~~~----~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~--~~~~g~- 268 (327)
T 2xbg_A 197 EPHNRTTSRRLHNMGFTPDGR-LWMI----VNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNE--VWLAGG- 268 (327)
T ss_dssp EEEECCSSSCEEEEEECTTSC-EEEE----ETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSC--EEEEES-
T ss_pred eECCCCCCCccceeEECCCCC-EEEE----eCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCE--EEEEeC-
Confidence 2211 1122233444445543 3333 45777776643323222222211 1112477888887664 244444
Q ss_pred CCeEEEEEccCCCccceeecc--CcccCeEEEEEcCCCCEEEEEcCCCeEEEee
Q psy6859 159 SSHVHIYDCKGNGTPLHVLDR--LHTKPVVLIKFNPIYQVVVSVDKAGILEYWS 210 (261)
Q Consensus 159 d~~i~i~d~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 210 (261)
++.+ ++... .++.-..+.. .....+.++.|.++++ +++++.+|.|.-++
T Consensus 269 ~g~i-~~S~D-gG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 269 AGAL-LCSQD-GGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp TTCE-EEESS-TTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred CCeE-EEeCC-CCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence 6766 33333 4444443420 1245678888876655 55556788776665
No 289
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.00 E-value=0.00018 Score=60.06 Aligned_cols=180 Identities=10% Similarity=-0.014 Sum_probs=99.0
Q ss_pred CCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEe-CCCcEEEEEccc----cceeeeeeccCcceeEEEEe
Q psy6859 23 DGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVA-SDKAMKVFDVIN----FDMINMIKLDFTPLTVECIH 97 (261)
Q Consensus 23 d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~v~~wd~~~----~~~~~~~~~~~~~~~~~~~~ 97 (261)
...|+..++... .....+. ....+..++|.+.+..|+.+. ..+.|+.+++.. ......+.........+.+.
T Consensus 385 ~~~I~~id~~~~--~~~~~~~-~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD 461 (699)
T 1n7d_A 385 RHEVRKMTLDRS--EYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 461 (699)
T ss_dssp TTC-CEECTTSC--CEECCSC-CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECC
T ss_pred ccceEEEeCCCC--cceeeec-cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEE
Confidence 356777777664 2322222 224567899998666666554 557899998864 12222221111112234454
Q ss_pred ecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecC-CCeEEEEEccCCCcccee
Q psy6859 98 YLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD-SSHVHIYDCKGNGTPLHV 176 (261)
Q Consensus 98 ~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~ 176 (261)
+.+..++.. -...+.|.++++........+... ......++++|.+..+ +++... .+.|..+++. +.....
T Consensus 462 ~~~g~LY~t---D~~~~~I~v~d~dg~~~~~l~~~~--~~~P~giavDp~~g~l-y~td~~~~~~I~~~~~d--G~~~~~ 533 (699)
T 1n7d_A 462 WIHSNIYWT---DSVLGTVSVADTKGVKRKTLFREQ--GSKPRAIVVDPVHGFM-YWTDWGTPAKIKKGGLN--GVDIYS 533 (699)
T ss_dssp CSSSBCEEC---CTTTSCEEEEBSSSCCEEEECCCS--SCCCCCEECCSSSSCC-EECCCSSSCCEEBCCSS--SCCCCE
T ss_pred eeCCcEEEE---eccCCeEEEEecCCCceEEEEeCC--CCCcceEEEccCCCcE-EEcccCCCCeEEEEeCC--CCCeeE
Confidence 444444332 145678999998766443333221 1234677888865542 444322 3678888775 333333
Q ss_pred eccCcccCeEEEEEcCCCCEE-EEEcCCCeEEEeeccc
Q psy6859 177 LDRLHTKPVVLIKFNPIYQVV-VSVDKAGILEYWSGYK 213 (261)
Q Consensus 177 ~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~ 213 (261)
+....-...+.|+|+|++..| ++-...+.|..+++..
T Consensus 534 l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG 571 (699)
T 1n7d_A 534 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 571 (699)
T ss_dssp ESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred EEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence 310223456789999986655 4445677899998853
No 290
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.99 E-value=0.0008 Score=50.20 Aligned_cols=162 Identities=9% Similarity=0.055 Sum_probs=100.5
Q ss_pred cccceeEEEEeeCCCEEEEEe-CCCcEEEEEccccceeeeeeccC-----c---ceeEEEE---eecCCceeeeeeec--
Q psy6859 45 HLGVIHSICTNYNGTLLCTVA-SDKAMKVFDVINFDMINMIKLDF-----T---PLTVECI---HYLGDAIPTAAVSD-- 110 (261)
Q Consensus 45 ~~~~v~~~~~~~~~~~l~s~~-~dg~v~~wd~~~~~~~~~~~~~~-----~---~~~~~~~---~~~~~~~~~~~~s~-- 110 (261)
..-.-.++.|.+....+..++ ..++|..||...+..... .... . ....+.+ .+. ..++.+.-.+
T Consensus 11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~~a 88 (334)
T 2p9w_A 11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNAKS 88 (334)
T ss_dssp TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEETTT
T ss_pred cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCC-CcEEEEEccccc
Confidence 334457889987555555555 789999999875543332 2221 1 1233344 344 3444431110
Q ss_pred --------CCCCeEEEEEcC---CCceeeEEeecC-----------CcceEEEEEEeCCCCceEEEEecCC-CeEEEEEc
Q psy6859 111 --------QDSSRVHIYDCK---GNDMINMIKLDF-----------TPLTVECIHYLGDAIPTAAVSDQDS-SHVHIYDC 167 (261)
Q Consensus 111 --------~~d~~i~i~d~~---~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~d-~~i~i~d~ 167 (261)
+.+..|..||+. +++.+....+.. .......++..+++.. .++++.. +.|..++.
T Consensus 89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gna--YVt~s~~~~~I~rV~p 166 (334)
T 2p9w_A 89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNS--YVAFALGMPAIARVSA 166 (334)
T ss_dssp TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCE--EEEEEESSCEEEEECT
T ss_pred ccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCE--EEeCCCCCCeEEEEeC
Confidence 236889999999 777766655321 1235788999999975 6767766 77766665
Q ss_pred cCCCccceeec-----cCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecc
Q psy6859 168 KGNGTPLHVLD-----RLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGY 212 (261)
Q Consensus 168 ~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 212 (261)
. ++.+..+. .......+.|+++|+|+.|++....|.|.-+|+.
T Consensus 167 d--G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 167 D--GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp T--SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred C--CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 4 33333321 0112336799999999988777669999999985
No 291
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.93 E-value=0.0031 Score=46.91 Aligned_cols=186 Identities=9% Similarity=0.022 Sum_probs=89.5
Q ss_pred CeEEEecC--CCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCC----CcEEEEEccccceeeeeeccC
Q psy6859 15 DFVITASN--DGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASD----KAMKVFDVINFDMINMIKLDF 88 (261)
Q Consensus 15 ~~l~s~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----g~v~~wd~~~~~~~~~~~~~~ 88 (261)
.+++.|+. ...+.+||..+.....+..+...... .++ ...+++.++.|+.+ ..+.+||+.+.+....-..+.
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~-~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRD-AAC-VFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBS-CEE-EEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccce-eEE-EEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 35566665 35788899888644444333221111 122 22366677777754 568889988776443322222
Q ss_pred cceeEEEEeecCCceeeeeeecCC------CCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecC----
Q psy6859 89 TPLTVECIHYLGDAIPTAAVSDQD------SSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD---- 158 (261)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~s~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 158 (261)
..........+ +.++.. |+. ...+.+||+.+.+-...-...... .-.++... ++. +++.|+.
T Consensus 91 ~r~~~~~~~~~-~~iyv~---GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-~~~~~~~~-~~~--iyv~GG~~~~~ 162 (306)
T 3ii7_A 91 PRDSLAACAAE-GKIYTS---GGSEVGNSALYLFECYDTRTESWHTKPSMLTQR-CSHGMVEA-NGL--IYVCGGSLGNN 162 (306)
T ss_dssp CCBSCEEEEET-TEEEEE---CCBBTTBSCCCCEEEEETTTTEEEEECCCSSCC-BSCEEEEE-TTE--EEEECCEESCT
T ss_pred cccceeEEEEC-CEEEEE---CCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCc-ceeEEEEE-CCE--EEEECCCCCCC
Confidence 22222222223 333332 222 256889999887543322221111 11122222 222 2444432
Q ss_pred -----CCeEEEEEccCCCc--cceeeccCcccCeEEEEEcCCCCEEEEEcCC-----CeEEEeecccc
Q psy6859 159 -----SSHVHIYDCKGNGT--PLHVLDRLHTKPVVLIKFNPIYQVVVSVDKA-----GILEYWSGYKQ 214 (261)
Q Consensus 159 -----d~~i~i~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~ 214 (261)
-..+.+||.. +.+ .+..+. .....-..+.+ ++++++.|+.+ ..+.+||+.++
T Consensus 163 ~~~~~~~~~~~yd~~-~~~W~~~~~~p-~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 226 (306)
T 3ii7_A 163 VSGRVLNSCEVYDPA-TETWTELCPMI-EARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLN 226 (306)
T ss_dssp TTCEECCCEEEEETT-TTEEEEECCCS-SCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTT
T ss_pred CcccccceEEEeCCC-CCeEEECCCcc-chhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCC
Confidence 3458889987 442 122221 11111122222 56666776643 35788888654
No 292
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.91 E-value=0.0039 Score=47.38 Aligned_cols=190 Identities=14% Similarity=0.083 Sum_probs=101.7
Q ss_pred ceeEEEEeeCCCEEEEEe------------CCCcEEEEEcccc-ceeeeeecc--------CcceeEEEEee--cCCcee
Q psy6859 48 VIHSICTNYNGTLLCTVA------------SDKAMKVFDVINF-DMINMIKLD--------FTPLTVECIHY--LGDAIP 104 (261)
Q Consensus 48 ~v~~~~~~~~~~~l~s~~------------~dg~v~~wd~~~~-~~~~~~~~~--------~~~~~~~~~~~--~~~~~~ 104 (261)
....+...|+|..+++++ .+|.|.++|..+. .....+... ..|.. +.+.. ++...+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhG-i~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHG-ISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEE-EEEEECTTCCEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeee-eEEEECCCCcEEE
Confidence 346777788875555542 6899999998732 112222221 12332 23323 333222
Q ss_pred eeeeecCCCCeEEEEEcCCCc-e---eeEEeecCCcceEEEEEEeCCCCceEEEEec-----------------CCCeEE
Q psy6859 105 TAAVSDQDSSRVHIYDCKGND-M---INMIKLDFTPLTVECIHYLGDAIPTAAVSDQ-----------------DSSHVH 163 (261)
Q Consensus 105 ~~~~s~~~d~~i~i~d~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~d~~i~ 163 (261)
.++-.+..+..|.+|++.... . +..+... .-.....+...+++.. +++.. ..|.|.
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~-~~~~pND~~v~~~G~f--yvt~~~~ftd~~~~~~e~~~~~~~g~vy 206 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHK-LLPSVNDIVAVGPEHF--YATNDHYFIDPYLKSWEMHLGLAWSFVT 206 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCT-TCSSEEEEEEEETTEE--EEEESCSCSSHHHHHHHHHTTCCCEEEE
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccC-CCCCCceEEEeCCCCE--EecCCcEeCCcccccchhhccCCccEEE
Confidence 222222346788888776532 2 2222221 2235678888888852 44432 123444
Q ss_pred EEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEE-cCCCeEEEeecccccccCCeeeeeecccccceeecCCCccce
Q psy6859 164 IYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSV-DKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYP 242 (261)
Q Consensus 164 i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (261)
.+|. ++ +..+. ..-...+.++|+||++.|+.+ +..+.|..|++..... ....+.+ ......
T Consensus 207 r~d~---~~-~~~~~-~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~------------l~~~~~~-~~~g~P 268 (355)
T 3sre_A 207 YYSP---ND-VRVVA-EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWT------------LTPLRVL-SFDTLV 268 (355)
T ss_dssp EECT---TC-CEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSC------------EEEEEEE-ECSSEE
T ss_pred EEEC---Ce-EEEee-cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCc------------EecCEEE-eCCCCC
Confidence 4443 32 33332 334557999999999877554 4678899999853100 0001111 113556
Q ss_pred eeeeECC-CCceEEEeec
Q psy6859 243 SGLSFSP-DGNKFVTISM 259 (261)
Q Consensus 243 ~~~~~s~-~~~~l~s~~~ 259 (261)
-.++..+ +|++.+++..
T Consensus 269 DGi~vD~e~G~lwva~~~ 286 (355)
T 3sre_A 269 DNISVDPVTGDLWVGCHP 286 (355)
T ss_dssp EEEEECTTTCCEEEEEES
T ss_pred ceEEEeCCCCcEEEEecC
Confidence 7888888 5887776643
No 293
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.89 E-value=0.0055 Score=48.68 Aligned_cols=198 Identities=8% Similarity=-0.055 Sum_probs=111.3
Q ss_pred eEEEEEcC---CCeEEEecCCCeEEEEeccCCceeeeEEeec---cccceeEEEE-------eeCCCEEEEEeCCC----
Q psy6859 6 ITHVVVTK---TDFVITASNDGHIKFWKKQEEGIEFVKHFRS---HLGVIHSICT-------NYNGTLLCTVASDK---- 68 (261)
Q Consensus 6 v~~~~~~~---~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~---~~~~v~~~~~-------~~~~~~l~s~~~dg---- 68 (261)
-..|+|.| ++++++-...+.|++.|.+++ .....+.. .......++| ++++++|+.+...+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~--~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR--MLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD 218 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTT--EEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCC--EEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence 46789997 344444444567888888775 33322222 1235789999 99998676666543
Q ss_pred ---cEEEEEccc-ccee-----eeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcC-------CCce------
Q psy6859 69 ---AMKVFDVIN-FDMI-----NMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCK-------GNDM------ 126 (261)
Q Consensus 69 ---~v~~wd~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~-------~~~~------ 126 (261)
.|.+.+... ++.. ..+..-.++ ..+.+.+.+..++.. -..++.|..+|+. ++..
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p-~giavdp~~g~LYvt---d~~~g~V~r~d~~~~~~~~~tg~~~tp~~~ 294 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAAYKQC-NGATIHPINGELYFN---SYEKGQVFRLDLVDYFKTIKNGGSWDPIVK 294 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEEESCC-CCEEECTTTCCEEEE---ETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred cCceEEEEecCCCCceeecccceeeccCCCc-eEEEEcCCCCeEEEE---ECCCCEEEEEecccccccccCceeeccccc
Confidence 255555333 2221 122211222 344566655555443 2567889999987 4543
Q ss_pred -----eeE-EeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccc---eeecc-----C---------ccc
Q psy6859 127 -----INM-IKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPL---HVLDR-----L---------HTK 183 (261)
Q Consensus 127 -----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~---~~~~~-----~---------~~~ 183 (261)
... +... .......++++|++.. ++++-.....|+.++.......+ ..+.. + .-.
T Consensus 295 ~~~g~~~~l~~~~-~~~~p~~ia~~p~G~~-lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~ 372 (496)
T 3kya_A 295 NNPNTFKQLFTIA-DPSWEFQIFIHPTGKY-AYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMN 372 (496)
T ss_dssp GCTTTEEEEEECS-SSSCCEEEEECTTSSE-EEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCS
T ss_pred ccccccceeEecC-CCCCceEEEEcCCCCE-EEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccC
Confidence 112 2221 2224578999999974 46666778899997765211111 12210 0 011
Q ss_pred CeE-EEEEc-------CCCCEEEEEcCCCeEEEeec
Q psy6859 184 PVV-LIKFN-------PIYQVVVSVDKAGILEYWSG 211 (261)
Q Consensus 184 ~v~-~~~~~-------~~~~~l~~~~~dg~i~iwd~ 211 (261)
... .++.. +++.+.++-.....|+.++.
T Consensus 373 ~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~ 408 (496)
T 3kya_A 373 NPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP 408 (496)
T ss_dssp SEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT
T ss_pred CCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC
Confidence 234 45554 45666666667888999884
No 294
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.87 E-value=0.0044 Score=46.71 Aligned_cols=185 Identities=9% Similarity=0.153 Sum_probs=107.0
Q ss_pred CeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeC----CC---EEEEEeC---CCcEEEEEcc--ccceee
Q psy6859 15 DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYN----GT---LLCTVAS---DKAMKVFDVI--NFDMIN 82 (261)
Q Consensus 15 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~s~~~---dg~v~~wd~~--~~~~~~ 82 (261)
.+++.....+-+.+||++. +.+..+.. +.++.+..-|+ ++ ++++..+ +++|.+|++. +++ +.
T Consensus 41 s~ii~t~k~~gL~Vydl~G---~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~ 114 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSLDG---KMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ 114 (355)
T ss_dssp CEEEEEETTTEEEEEETTS---CEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred cEEEEEcCCCCEEEEcCCC---cEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence 4666667788999999954 55555653 55677766653 22 2233333 5789999773 333 43
Q ss_pred eee-------cc-CcceeEEEE-eecCCceeeeeeecCCCCeEEEEEcC-------CCceeeEEeecCCcceEEEEEEeC
Q psy6859 83 MIK-------LD-FTPLTVECI-HYLGDAIPTAAVSDQDSSRVHIYDCK-------GNDMINMIKLDFTPLTVECIHYLG 146 (261)
Q Consensus 83 ~~~-------~~-~~~~~~~~~-~~~~~~~~~~~~s~~~d~~i~i~d~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 146 (261)
.+. .. ..+...+.+ .+....+. + +....++.+..|++. +.+.++.+.... .+..+...+
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~y-a-fV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs---q~EgcvvDd 189 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYY-A-MVTGKEGEFEQYELKADKNGYISGKKVRAFKMNS---QTEGMAADD 189 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEE-E-EEECSSSEEEEEEEEECTTSCEEEEEEEEEECSS---CEEEEEEET
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEE-E-EEECCCCeEEEEEEEeCCCCcccceEEEEecCCC---CcceEEEcC
Confidence 331 11 223323332 33333221 1 122778999999883 234566666543 567788887
Q ss_pred CCCceEEEEecCCCeEEEEEccCC----Cccceeec-cCcccCeEEEEE--cCCCC-EEEEEc-CCCeEEEeecc
Q psy6859 147 DAIPTAAVSDQDSSHVHIYDCKGN----GTPLHVLD-RLHTKPVVLIKF--NPIYQ-VVVSVD-KAGILEYWSGY 212 (261)
Q Consensus 147 ~~~~~~~~~~~~d~~i~i~d~~~~----~~~~~~~~-~~~~~~v~~~~~--~~~~~-~l~~~~-~dg~i~iwd~~ 212 (261)
.... +..+-++..|..|+.+.. .+.+..+. ......+..|++ .++++ +|++++ .+.++.+||.+
T Consensus 190 ~~g~--Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 190 EYGR--LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp TTTE--EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred CCCe--EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 7664 666666766666664422 23444432 122346888888 45555 555444 77899999985
No 295
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.80 E-value=0.0057 Score=45.89 Aligned_cols=182 Identities=8% Similarity=0.003 Sum_probs=104.9
Q ss_pred CCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEE-EEeCCCcEEEEEccccceee-eeeccCcceeEEEEeecC
Q psy6859 23 DGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLC-TVASDKAMKVFDVINFDMIN-MIKLDFTPLTVECIHYLG 100 (261)
Q Consensus 23 d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~v~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~ 100 (261)
...|+..+++....+....+. .......+.|.+.+..|+ +-...+.|..+++....... .+.........+.+.+.+
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~ 90 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 90 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT
T ss_pred cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC
Confidence 468888888765212222222 223567899998544444 44467789889987553211 112111222345555444
Q ss_pred CceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEe-cCCCeEEEEEccCCCccceeecc
Q psy6859 101 DAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSD-QDSSHVHIYDCKGNGTPLHVLDR 179 (261)
Q Consensus 101 ~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~ 179 (261)
..++.. -...+.|.++++........+.. .......++++|.+.. ++++. +..+.|..+++. +.....+..
T Consensus 91 g~ly~~---d~~~~~I~~~~~dG~~~~~l~~~--~~~~P~giavdp~~g~-ly~td~~~~~~I~r~~~d--G~~~~~~~~ 162 (318)
T 3sov_A 91 EKLYWT---DSETNRIEVSNLDGSLRKVLFWQ--ELDQPRAIALDPSSGF-MYWTDWGEVPKIERAGMD--GSSRFIIIN 162 (318)
T ss_dssp TEEEEE---ETTTTEEEEEETTSCSCEEEECS--SCSSEEEEEEEGGGTE-EEEEECSSSCEEEEEETT--SCSCEEEEC
T ss_pred CeEEEE---ECCCCEEEEEECCCCcEEEEEeC--CCCCccEEEEeCCCCE-EEEEecCCCCEEEEEEcC--CCCeEEEEE
Confidence 444332 25678899999876543322221 2234578899986554 24443 235788888875 333333321
Q ss_pred CcccCeEEEEEcCCCCEEEEE-cCCCeEEEeeccc
Q psy6859 180 LHTKPVVLIKFNPIYQVVVSV-DKAGILEYWSGYK 213 (261)
Q Consensus 180 ~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~ 213 (261)
..-...+.|+++|++..|+.+ ...+.|..+|+..
T Consensus 163 ~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG 197 (318)
T 3sov_A 163 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG 197 (318)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence 223456899999977766544 4678899998753
No 296
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.79 E-value=0.0053 Score=45.48 Aligned_cols=190 Identities=7% Similarity=0.037 Sum_probs=90.4
Q ss_pred CCeEEEec-CC-----CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCC-----CcEEEEEccccc---
Q psy6859 14 TDFVITAS-ND-----GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASD-----KAMKVFDVINFD--- 79 (261)
Q Consensus 14 ~~~l~s~~-~d-----~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----g~v~~wd~~~~~--- 79 (261)
+.+++.|+ .+ ..+.++|..+.....+..+.... ........+++.++.|+.+ ..+.+||+.+.+
T Consensus 15 ~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r--~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~ 92 (301)
T 2vpj_A 15 EVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKR--RYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGV 92 (301)
T ss_dssp EEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCC--BSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCC
T ss_pred CEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhh--ccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCe
Confidence 34666666 33 36788888876444433332211 1112223466677777754 468899988766
Q ss_pred eeeeeeccCcceeEEEEeecCCceeee-eeecC-CCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEec
Q psy6859 80 MINMIKLDFTPLTVECIHYLGDAIPTA-AVSDQ-DSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ 157 (261)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (261)
....-..+...........+ +.++.. ...+. ....+.+||+.+.+-...-........ .++... ++. +++.|+
T Consensus 93 W~~~~~~p~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~-~~~--iyv~GG 167 (301)
T 2vpj_A 93 WYSVAPMNVRRGLAGATTLG-DMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREG-AGLVVA-SGV--IYCLGG 167 (301)
T ss_dssp CEEECCCSSCCBSCEEEEET-TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBS-CEEEEE-TTE--EEEECC
T ss_pred eEECCCCCCCccceeEEEEC-CEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCccc-ceEEEE-CCE--EEEECC
Confidence 33322222221112222223 334333 11100 134688999887754333222211111 122222 232 345554
Q ss_pred CC-----CeEEEEEccCCCcc--ceeeccCcccCeEEEEEcCCCCEEEEEcCC-----CeEEEeecccc
Q psy6859 158 DS-----SHVHIYDCKGNGTP--LHVLDRLHTKPVVLIKFNPIYQVVVSVDKA-----GILEYWSGYKQ 214 (261)
Q Consensus 158 ~d-----~~i~i~d~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~ 214 (261)
.+ ..+.+||+. +.+- +..+. ........+.+ ++++++.|+.+ ..+.+||+.++
T Consensus 168 ~~~~~~~~~~~~~d~~-~~~W~~~~~~p-~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 232 (301)
T 2vpj_A 168 YDGLNILNSVEKYDPH-TGHWTNVTPMA-TKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTD 232 (301)
T ss_dssp BCSSCBCCCEEEEETT-TTEEEEECCCS-SCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CCCCcccceEEEEeCC-CCcEEeCCCCC-cccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCC
Confidence 33 458889986 4421 22221 11111122222 56667777654 46888888654
No 297
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.75 E-value=0.0075 Score=45.93 Aligned_cols=237 Identities=11% Similarity=0.033 Sum_probs=114.2
Q ss_pred CeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEee---ccccceeEEEEeeC---CCEEEEEeC-C-----CcEE
Q psy6859 5 PITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFR---SHLGVIHSICTNYN---GTLLCTVAS-D-----KAMK 71 (261)
Q Consensus 5 ~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~---~~~~~v~~~~~~~~---~~~l~s~~~-d-----g~v~ 71 (261)
.-..++|.| +++++ +..+|.|.+++ +...+.+..+. ........|+++|+ +..|+.+.. . +.|.
T Consensus 32 ~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 32 VPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp CEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 346899999 76544 55669999988 33223332221 12345789999998 445554443 2 5677
Q ss_pred EEEccccc-----ee-eeee---ccCcceeEEEEeecCCceeeeeeec---------CCCCeEEEEEcCCC---------
Q psy6859 72 VFDVINFD-----MI-NMIK---LDFTPLTVECIHYLGDAIPTAAVSD---------QDSSRVHIYDCKGN--------- 124 (261)
Q Consensus 72 ~wd~~~~~-----~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~---------~~d~~i~i~d~~~~--------- 124 (261)
.++...+. .+ ..+. ...+....+.+.+++...++..-.+ +..+.|.-++....
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~ 188 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLG 188 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTT
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccC
Confidence 77776431 11 1122 1112234566777774333320000 01245666665431
Q ss_pred ---ceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCC-------eEEEEEccCC---------------Cccceeecc
Q psy6859 125 ---DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS-------HVHIYDCKGN---------------GTPLHVLDR 179 (261)
Q Consensus 125 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-------~i~i~d~~~~---------------~~~~~~~~~ 179 (261)
.....+... -.....++|+|+...+++.-.+.+. .|.+..-... ..++..+.
T Consensus 189 ~~~~~~~i~a~G--~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~- 265 (352)
T 2ism_A 189 RRGARPEVYSLG--HRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP- 265 (352)
T ss_dssp CTTSCTTEEEEC--CSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-
T ss_pred CCCCCccEEEEc--CCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC-
Confidence 011111111 1134677888843322222222222 2333321100 01223332
Q ss_pred CcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEee
Q psy6859 180 LHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTIS 258 (261)
Q Consensus 180 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 258 (261)
+......++| .+|.++++.-..+.|...++........ .......+ .-...+..+++.|||.++++..
T Consensus 266 -~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~--------~~~~~~~~-~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 266 -QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWR--------VLRVETAL-SGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp -TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEE--------EEEEEEEE-ESSCCEEEEEECTTSCEEEEEC
T ss_pred -CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCccee--------ecchheec-ccCCCeeEEEECCCCcEEEEEe
Confidence 2234567787 5677666666677777777653210000 00011111 1235789999999998776653
No 298
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.73 E-value=0.0088 Score=46.23 Aligned_cols=148 Identities=9% Similarity=0.124 Sum_probs=89.9
Q ss_pred eecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecC--CcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCc--
Q psy6859 97 HYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDF--TPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGT-- 172 (261)
Q Consensus 97 ~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~-- 172 (261)
..++..++.+ .++.|+.-++.....-+.+.... .-..+..+..+|++..+ ++. .+..|.|..+. .+.
T Consensus 29 ~~n~t~i~~a-----~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lL-Al~--g~~~V~Vv~LP-~~~~~ 99 (452)
T 3pbp_A 29 SQNGTRIVFI-----QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLL-CLF--NDNEIFVMEVP-WGYSN 99 (452)
T ss_dssp ETTTTEEEEE-----ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEE-EEE--CSSEEEEEECC-TTCSC
T ss_pred EcCCCEEEEE-----ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEE-EEe--cCCeEEEEEec-Ccccc
Confidence 3344444443 56778877777554455555542 11145678999999852 222 36789998886 221
Q ss_pred --------cc--eeeccC-----cccCeEEEEEcCCC---CEEEEEcCCCeEEEeecccccccCCeeeeeecccccceee
Q psy6859 173 --------PL--HVLDRL-----HTKPVVLIKFNPIY---QVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFE 234 (261)
Q Consensus 173 --------~~--~~~~~~-----~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 234 (261)
++ +.+..+ ...+|..+.|+|-+ ..|++-..|+.|++||+.. .+..|. .++.. ...+.
T Consensus 100 ~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~-s~~~P~--~L~k~--~~~fg 174 (452)
T 3pbp_A 100 VEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN-SQEKPI--VLNKP--NNSFG 174 (452)
T ss_dssp CCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC-TTSCCE--EESCC--CSEEE
T ss_pred CcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc-CCCCCc--chhcc--ccccC
Confidence 11 122201 25679999999965 4788888999999999975 222232 11111 11223
Q ss_pred cCCCccceeeeeECCCCceEEEee
Q psy6859 235 FAKNKTYPSGLSFSPDGNKFVTIS 258 (261)
Q Consensus 235 ~~~~~~~v~~~~~s~~~~~l~s~~ 258 (261)
+......|.+++|.+++-.|...+
T Consensus 175 ~d~~~~ev~S~~Fg~~~lTLYvl~ 198 (452)
T 3pbp_A 175 LDARVNDITDLEFSKDGLTLYCLN 198 (452)
T ss_dssp SCSSCCCEEEEEECTTSSCEEEEE
T ss_pred CCcccceEEEEEEcCCCcEEEEEe
Confidence 334457889999999887766644
No 299
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.72 E-value=0.014 Score=48.13 Aligned_cols=201 Identities=7% Similarity=-0.057 Sum_probs=109.6
Q ss_pred CeEEEEEcC-CCe-EEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEE-EEEeCCCcEEEEEcccccee
Q psy6859 5 PITHVVVTK-TDF-VITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLL-CTVASDKAMKVFDVINFDMI 81 (261)
Q Consensus 5 ~v~~~~~~~-~~~-l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~v~~wd~~~~~~~ 81 (261)
....|+|++ ++. +++-...+.|..++++... .....+...-.....+++.+.+..| ++-...+.|.+.++......
T Consensus 41 ~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~-~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~ 119 (619)
T 3s94_A 41 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE-SVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 119 (619)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEEC------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred ceEEEEEEeCCCEEEEEECCCCeEEEEEccCCC-ceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEE
Confidence 456888887 544 4454556788888877541 1122233222467899999855544 44456788999998643322
Q ss_pred eeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCe
Q psy6859 82 NMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSH 161 (261)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 161 (261)
..+.........+.+.+.+..++..-. +..+.|...++........... .-.....++++++... ++++-...+.
T Consensus 120 ~l~~~~l~~P~~Iavdp~~g~ly~tD~--g~~~~I~r~~~dG~~~~~l~~~--~~~~P~Glald~~~~~-LY~aD~~~~~ 194 (619)
T 3s94_A 120 VLFWQELDQPRAIALDPSSGFMYWTDW--GEVPKIERAGMDGSSRFIIINS--EIYWPNGLTLDYEEQK-LYWADAKLNF 194 (619)
T ss_dssp EEECSSCSCCCCEEEETTTTEEEEEEC--SSSCEEEEEETTSCSCEEEECS--SCSSEEEEEEETTTTE-EEEEETTTCC
T ss_pred EEEeCCCCCCceEEEecCCCeEEEecc--CCCCEEEEEECCCCceEEEEeC--CCCCCcEEEEEccCCE-EEEEeCCCCe
Confidence 222122222345566665555544311 2246777777765433333221 2235678999987664 3566666788
Q ss_pred EEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccc
Q psy6859 162 VHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQ 214 (261)
Q Consensus 162 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 214 (261)
|..+|+. .. ..+.+.........+|++..+ .+.++-...+.|...|..++
T Consensus 195 I~~~~~d-G~-~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg 244 (619)
T 3s94_A 195 IHKSNLD-GT-NRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTG 244 (619)
T ss_dssp EEEESSS-CC-EEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSC
T ss_pred EEEecCC-CC-ccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCC
Confidence 9999986 32 222221012222356777655 34444456778888887654
No 300
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.72 E-value=0.014 Score=48.15 Aligned_cols=198 Identities=6% Similarity=-0.081 Sum_probs=118.9
Q ss_pred CeEEEEEcC-C-CeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEE-EEEeCCCcEEEEEcccccee
Q psy6859 5 PITHVVVTK-T-DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLL-CTVASDKAMKVFDVINFDMI 81 (261)
Q Consensus 5 ~v~~~~~~~-~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~v~~wd~~~~~~~ 81 (261)
....|+|++ + .++++-..++.|..++++... ....+.........+++.+.+..| ++-...+.|.+.++......
T Consensus 38 ~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~--~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~ 115 (628)
T 4a0p_A 38 EASALDFDVTDNRIYWTDISLKTISRAFMNGSA--LEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQ 115 (628)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCE
T ss_pred ceEEEEEECCCCEEEEEECCCCeEEEEECCCCC--cEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEE
Confidence 466899998 4 455566677899988887642 222232222456889998755555 44445678999998543322
Q ss_pred eeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCe
Q psy6859 82 NMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSH 161 (261)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 161 (261)
..+.........+.+.+....++..-. +..+.|...++.......... .-.....+++++++.. ++++-...+.
T Consensus 116 ~l~~~~l~~P~~iavdp~~G~lY~tD~--g~~~~I~r~~~dG~~~~~l~~---~~~~P~GlalD~~~~~-LY~aD~~~~~ 189 (628)
T 4a0p_A 116 VLVWKDLDSPRALALDPAEGFMYWTEW--GGKPKIDRAAMDGSERTTLVP---NVGRANGLTIDYAKRR-LYWTDLDTNL 189 (628)
T ss_dssp EEECSSCCCEEEEEEETTTTEEEEEEC--SSSCEEEEEETTSCSCEEEEC---SCSSEEEEEEETTTTE-EEEEETTTTE
T ss_pred EEEeCCCCCcccEEEccCCCeEEEeCC--CCCCEEEEEeCCCCceEEEEC---CCCCcceEEEccccCE-EEEEECCCCE
Confidence 222122223345666665555544311 235688888887665433332 2235678999997765 4666667889
Q ss_pred EEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccc
Q psy6859 162 VHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQ 214 (261)
Q Consensus 162 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 214 (261)
|..+|+. .... ..+. ..-....++++.. +.+.++-...+.|...|..++
T Consensus 190 I~~~d~d-G~~~-~v~~-~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 190 IESSNML-GLNR-EVIA-DDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp EEEEETT-SCSC-EEEE-ECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred EEEEcCC-CCce-EEee-ccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCC
Confidence 9999997 3322 3343 3334456788765 444455556788888886544
No 301
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.68 E-value=0.0084 Score=44.44 Aligned_cols=191 Identities=10% Similarity=0.121 Sum_probs=90.1
Q ss_pred CCCeEEEecCC-----CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCC-----cEEEEEccccceee
Q psy6859 13 KTDFVITASND-----GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDK-----AMKVFDVINFDMIN 82 (261)
Q Consensus 13 ~~~~l~s~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-----~v~~wd~~~~~~~~ 82 (261)
.+.+++.|+.+ ..+.+||..+.....+..+...... .+++ .-+++.++.|+.++ .+.+||+.+.+...
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~-~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 138 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRST-LGAA-VLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH 138 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEE-EETTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccc-eEEE-EECCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence 34566666654 3577888877644444333221111 1222 23667777777553 47788887765443
Q ss_pred eeeccCcceeEEEEeecCCceeee-eeecCC---CCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecC
Q psy6859 83 MIKLDFTPLTVECIHYLGDAIPTA-AVSDQD---SSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD 158 (261)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (261)
.-..+...........++ .++.. ...+.. -..+.+||+.+.+-...-...... .-.++....+. +++.|+.
T Consensus 139 ~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~~~~~~~---iyv~GG~ 213 (302)
T 2xn4_A 139 VAPMNTRRSSVGVGVVGG-LLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRR-SGAGVGVLNNL---LYAVGGH 213 (302)
T ss_dssp ECCCSSCCBSCEEEEETT-EEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCC-BSCEEEEETTE---EEEECCB
T ss_pred cCCCCCcccCceEEEECC-EEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCcccc-ccccEEEECCE---EEEECCC
Confidence 322222211112222233 33332 111111 356889999877543322211111 11122222222 3555544
Q ss_pred C-----CeEEEEEccCCCc--cceeeccCcccCeEEEEEcCCCCEEEEEcCCC-----eEEEeecccc
Q psy6859 159 S-----SHVHIYDCKGNGT--PLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAG-----ILEYWSGYKQ 214 (261)
Q Consensus 159 d-----~~i~i~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~ 214 (261)
+ ..+.+||+. +.+ .+..+. ........+. -++++++.|+.++ .+.+||+.++
T Consensus 214 ~~~~~~~~~~~yd~~-~~~W~~~~~~~-~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 214 DGPLVRKSVEVYDPT-TNAWRQVADMN-MCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp SSSSBCCCEEEEETT-TTEEEEECCCS-SCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CCCcccceEEEEeCC-CCCEeeCCCCC-CccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 3 468899987 442 222221 1111111222 2667777777553 4788888653
No 302
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.67 E-value=0.012 Score=46.17 Aligned_cols=196 Identities=10% Similarity=0.004 Sum_probs=108.0
Q ss_pred CeEEEEEcC-CCeEEEecCC---Ce-EEEEeccCCceeeeEEeeccccceeEEEEee-CCCEEEEEeCCCcEEEEEcccc
Q psy6859 5 PITHVVVTK-TDFVITASND---GH-IKFWKKQEEGIEFVKHFRSHLGVIHSICTNY-NGTLLCTVASDKAMKVFDVINF 78 (261)
Q Consensus 5 ~v~~~~~~~-~~~l~s~~~d---~~-i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~~wd~~~~ 78 (261)
....|++++ ++++++-... .. +...+.... ......+. .-.....++++| ++.++++-..++.|+.+|..++
T Consensus 183 ~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~-~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g 260 (433)
T 4hw6_A 183 QCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASG-FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATG 260 (433)
T ss_dssp CEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGT-TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTC
T ss_pred CccEEEECCCCCEEEEcCCCCcccceEEEEECCCC-eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCC
Confidence 467889998 7755444321 12 323332221 11111222 223457789999 6766666556788999998767
Q ss_pred ceeeee-eccCc-ceeEEEEeecCCceeeeeeecCCCCeEEEEEcCC--Cce--eeEEeec-C------------CcceE
Q psy6859 79 DMINMI-KLDFT-PLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKG--NDM--INMIKLD-F------------TPLTV 139 (261)
Q Consensus 79 ~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~--~~~--~~~~~~~-~------------~~~~~ 139 (261)
.....+ ..... ....+.+.++++.++.. -...+.|..++... +.. ...+... . .-...
T Consensus 261 ~~~~~~~~~~~~~~~~~ia~dpdG~~LYva---d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P 337 (433)
T 4hw6_A 261 TLTEEEVMMDTKGSNFHIVWHPTGDWAYII---YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGP 337 (433)
T ss_dssp CEEEEEEECSCCSSCEEEEECTTSSEEEEE---ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSE
T ss_pred eEEEEEeccCCCCCcccEEEeCCCCEEEEE---eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCC
Confidence 652222 22111 12247778888745443 25678899988652 321 1122111 0 01124
Q ss_pred EEEEE---------eCCCCceEEEEecCCCeEEEEEccCCCccceeeccC------------------cccCeEEEEEc-
Q psy6859 140 ECIHY---------LGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRL------------------HTKPVVLIKFN- 191 (261)
Q Consensus 140 ~~~~~---------~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~------------------~~~~v~~~~~~- 191 (261)
..+++ .+++ .++++-...+.|+.++. .+.. .++. + .-.....|+++
T Consensus 338 ~giav~~n~~y~~dd~~g--~lyvaD~~n~~I~~~~~--~G~v-~t~~-G~g~~~~~G~~dG~~~~~~~~~~P~giavd~ 411 (433)
T 4hw6_A 338 NQGIFVKNEAYAGEEDEY--DFYFCDRDSHTVRVLTP--EGRV-TTYA-GRGNSREWGYVDGELRSQALFNHPTSIAYDM 411 (433)
T ss_dssp EEEEEEECGGGTTSSCCE--EEEEEETTTTEEEEECT--TSEE-EEEE-CCCTTCSSCCBCEETTTTCBCSSEEEEEEET
T ss_pred ccEEEEccccccccCCCC--cEEEEECCCCEEEEECC--CCCE-EEEE-eCCCCCccccCCCccccccEeCCCcEEEEEC
Confidence 56777 4444 34677777888998885 3432 2221 1 11246789999
Q ss_pred CCCCEEEEEcCCCeEEEeec
Q psy6859 192 PIYQVVVSVDKAGILEYWSG 211 (261)
Q Consensus 192 ~~~~~l~~~~~dg~i~iwd~ 211 (261)
+++.++++-..+..|+.+++
T Consensus 412 ~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 412 KRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp TTTEEEEEEGGGTEEEEEEE
T ss_pred CCCEEEEEeCCCCEEEEEec
Confidence 66666666667778888775
No 303
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.63 E-value=0.019 Score=47.36 Aligned_cols=189 Identities=7% Similarity=0.010 Sum_probs=112.6
Q ss_pred CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEE-eCCCcEEEEEccccceeeeeeccCccee
Q psy6859 14 TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTV-ASDKAMKVFDVINFDMINMIKLDFTPLT 92 (261)
Q Consensus 14 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~v~~wd~~~~~~~~~~~~~~~~~~ 92 (261)
..+|+.+ ....|+..++++........+.+ -..+..++|++.+..|+.+ ..++.|..+++........+........
T Consensus 6 ~~~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~-~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~ 83 (628)
T 4a0p_A 6 EAFLLFS-RRADIRRISLETNNNNVAIPLTG-VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPE 83 (628)
T ss_dssp CCEEEEE-ETTEEEEEESSCTTCEEECCCCS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred CcEEEEE-eCCcEEEEECCCCCcceEEEcCC-CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc
Confidence 3444443 45788888988653222222222 2457899999865555544 4678888888864433333332222233
Q ss_pred EEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEe-cCCCeEEEEEccCCC
Q psy6859 93 VECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSD-QDSSHVHIYDCKGNG 171 (261)
Q Consensus 93 ~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~ 171 (261)
.+++.+.++.++.+ -...+.|.+.++........+.. .-.....++++|.... ++++- +..+.|...++. +
T Consensus 84 GlAvD~~~~~LY~t---D~~~~~I~v~~~dG~~~~~l~~~--~l~~P~~iavdp~~G~-lY~tD~g~~~~I~r~~~d--G 155 (628)
T 4a0p_A 84 GMAVDWLGKNLYWA---DTGTNRIEVSKLDGQHRQVLVWK--DLDSPRALALDPAEGF-MYWTEWGGKPKIDRAAMD--G 155 (628)
T ss_dssp EEEEETTTTEEEEE---ETTTTEEEEEETTSTTCEEEECS--SCCCEEEEEEETTTTE-EEEEECSSSCEEEEEETT--S
T ss_pred eEEEEeCCCEEEEE---ECCCCEEEEEecCCCcEEEEEeC--CCCCcccEEEccCCCe-EEEeCCCCCCEEEEEeCC--C
Confidence 45565555554433 25678899999876543222221 2235689999986554 34443 335778888875 3
Q ss_pred ccceeeccCcccCeEEEEEcCCCCEEEEE-cCCCeEEEeeccc
Q psy6859 172 TPLHVLDRLHTKPVVLIKFNPIYQVVVSV-DKAGILEYWSGYK 213 (261)
Q Consensus 172 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~ 213 (261)
.....+- ..-...+.|+++++++.|+.+ ...+.|..+|+..
T Consensus 156 ~~~~~l~-~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG 197 (628)
T 4a0p_A 156 SERTTLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG 197 (628)
T ss_dssp CSCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CceEEEE-CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCC
Confidence 3344443 344567899999987766555 4667898888854
No 304
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.57 E-value=0.013 Score=43.76 Aligned_cols=187 Identities=11% Similarity=0.011 Sum_probs=86.8
Q ss_pred eEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeC----C-------CcEEEEEccccceeeee
Q psy6859 16 FVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVAS----D-------KAMKVFDVINFDMINMI 84 (261)
Q Consensus 16 ~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~----d-------g~v~~wd~~~~~~~~~~ 84 (261)
+++.|+ ..+.+||..+..... ..+..............+++.++.|+. + ..+..||..+++....-
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred EEEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence 455566 578899998874433 222211122222233457778888873 1 12778888776643322
Q ss_pred eccCcceeEEEEeecCCceeee-eee----cCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecC-
Q psy6859 85 KLDFTPLTVECIHYLGDAIPTA-AVS----DQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD- 158 (261)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~-~~s----~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 158 (261)
..+........... ++.++.. ... ......+.+||+.+.+-...-...... .-.++....+. +++.|+.
T Consensus 84 ~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-~~~~~~~~~~~---iyv~GG~~ 158 (315)
T 4asc_A 84 PLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVV-YGHTVLSHMDL---VYVIGGKG 158 (315)
T ss_dssp CBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCC-BSCEEEEETTE---EEEECCBC
T ss_pred CCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcc-cceeEEEECCE---EEEEeCCC
Confidence 22222111112222 3344333 110 011356889999876533221211111 11222222322 3455543
Q ss_pred -----CCeEEEEEccCCCc--cceeeccCcccCeEEEEEcCCCCEEEEEcCCC-----eEEEeecccc
Q psy6859 159 -----SSHVHIYDCKGNGT--PLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAG-----ILEYWSGYKQ 214 (261)
Q Consensus 159 -----d~~i~i~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~ 214 (261)
-..+.+||.. +.+ .+..+. .....-..+.+ ++++++.|+.++ .+.+||+.++
T Consensus 159 ~~~~~~~~~~~yd~~-~~~W~~~~~~p-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 159 SDRKCLNKMCVYDPK-KFEWKELAPMQ-TARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp TTSCBCCCEEEEETT-TTEEEECCCCS-SCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred CCCcccceEEEEeCC-CCeEEECCCCC-CchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCC
Confidence 2458889987 432 222221 11111122222 567667776543 4778887653
No 305
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.57 E-value=0.012 Score=43.51 Aligned_cols=189 Identities=10% Similarity=0.101 Sum_probs=87.3
Q ss_pred CeEEEecCC----CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCC-----CcEEEEEccccceeeeee
Q psy6859 15 DFVITASND----GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASD-----KAMKVFDVINFDMINMIK 85 (261)
Q Consensus 15 ~~l~s~~~d----~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----g~v~~wd~~~~~~~~~~~ 85 (261)
.+++.|+.+ ..+.++|..+.....+..+...... .+++ .-+++.++.|+.+ ..+.+||..+.+....-.
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~-~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~ 94 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCR-AGMV-YMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN 94 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEE-EETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCccccc-ceEE-EECCEEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence 456666644 3578888887644433322211111 1222 2366677777754 358889988765443322
Q ss_pred ccCcceeEEEEeecCCceeee-eeecC-CCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecC-----
Q psy6859 86 LDFTPLTVECIHYLGDAIPTA-AVSDQ-DSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD----- 158 (261)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~-~~s~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 158 (261)
.+...........++ .++.. ...+. .-..+.+||+.+.+-...-...... .-.++....+. +++.|+.
T Consensus 95 ~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-~~~~~~~~~~~---iyv~GG~~~~~~ 169 (302)
T 2xn4_A 95 MRDRRSTLGAAVLNG-LLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRR-SSVGVGVVGGL---LYAVGGYDVASR 169 (302)
T ss_dssp CSSCCBSCEEEEETT-EEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCC-BSCEEEEETTE---EEEECCEETTTT
T ss_pred CCccccceEEEEECC-EEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcc-cCceEEEECCE---EEEEeCCCCCCC
Confidence 222211112222233 33332 11100 0135778998876543322221111 11222222222 2444432
Q ss_pred --CCeEEEEEccCCCc--cceeeccCcccCeEEEEEcCCCCEEEEEcCC-----CeEEEeecccc
Q psy6859 159 --SSHVHIYDCKGNGT--PLHVLDRLHTKPVVLIKFNPIYQVVVSVDKA-----GILEYWSGYKQ 214 (261)
Q Consensus 159 --d~~i~i~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~ 214 (261)
...+.+||+. +.+ .+..+. ........+.+ ++++++.|+.+ ..+.+||+.++
T Consensus 170 ~~~~~~~~yd~~-~~~W~~~~~~p-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 230 (302)
T 2xn4_A 170 QCLSTVECYNAT-TNEWTYIAEMS-TRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTN 230 (302)
T ss_dssp EECCCEEEEETT-TTEEEEECCCS-SCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTT
T ss_pred ccccEEEEEeCC-CCcEEECCCCc-cccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCC
Confidence 2458889886 442 222222 11111122222 56777777654 35888888654
No 306
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.55 E-value=0.014 Score=43.39 Aligned_cols=190 Identities=9% Similarity=0.032 Sum_probs=92.8
Q ss_pred CCeEEEecCC----CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCC------CcEEEEEccccceeee
Q psy6859 14 TDFVITASND----GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASD------KAMKVFDVINFDMINM 83 (261)
Q Consensus 14 ~~~l~s~~~d----~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d------g~v~~wd~~~~~~~~~ 83 (261)
+.+++.|+.+ ..+.+||..+.....+..+....... ++ ..-+++.++.|+.+ ..+.+||+.+.+....
T Consensus 56 ~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~-~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~ 133 (306)
T 3ii7_A 56 NVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSL-AA-CAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTK 133 (306)
T ss_dssp TEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSC-EE-EEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE
T ss_pred CEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccce-eE-EEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC
Confidence 4566677654 56788888876444443332211111 12 22367777777765 4588999887764433
Q ss_pred eeccCcceeEEEEeecCCceeee-eeecCC-----CCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEec
Q psy6859 84 IKLDFTPLTVECIHYLGDAIPTA-AVSDQD-----SSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ 157 (261)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (261)
-..+...........++ .++.. ...+.. -..+.+||+.+.+-...-...... .-.++....+. +++.|+
T Consensus 134 ~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~~~~~~~---i~v~GG 208 (306)
T 3ii7_A 134 PSMLTQRCSHGMVEANG-LIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEAR-KNHGLVFVKDK---IFAVGG 208 (306)
T ss_dssp CCCSSCCBSCEEEEETT-EEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCC-BSCEEEEETTE---EEEECC
T ss_pred CCCcCCcceeEEEEECC-EEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchh-hcceEEEECCE---EEEEeC
Confidence 22222212222222233 33333 111111 456889999887533322221111 11222222222 344544
Q ss_pred CC-----CeEEEEEccCCCc--cceeeccCcccCeEEEEEcCCCCEEEEEcCC-----CeEEEeecccc
Q psy6859 158 DS-----SHVHIYDCKGNGT--PLHVLDRLHTKPVVLIKFNPIYQVVVSVDKA-----GILEYWSGYKQ 214 (261)
Q Consensus 158 ~d-----~~i~i~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~ 214 (261)
.+ ..+.+||+. +.+ .+..+. ........+.+ ++++++.|+.+ ..+.+||+.++
T Consensus 209 ~~~~~~~~~~~~yd~~-~~~W~~~~~~p-~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 209 QNGLGGLDNVEYYDIK-LNEWKMVSPMP-WKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp EETTEEBCCEEEEETT-TTEEEECCCCS-CCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred CCCCCCCceEEEeeCC-CCcEEECCCCC-CCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 32 458889987 432 222222 11112222333 66777777744 46788888653
No 307
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.54 E-value=0.014 Score=43.23 Aligned_cols=186 Identities=10% Similarity=0.040 Sum_probs=90.3
Q ss_pred CCeEEEecCC-----CeEEEEeccCCc---eeeeEEeeccccceeEEEEeeCCCEEEEEeCC-----CcEEEEEccccce
Q psy6859 14 TDFVITASND-----GHIKFWKKQEEG---IEFVKHFRSHLGVIHSICTNYNGTLLCTVASD-----KAMKVFDVINFDM 80 (261)
Q Consensus 14 ~~~l~s~~~d-----~~i~iw~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----g~v~~wd~~~~~~ 80 (261)
+.+++.|+.+ ..+.+||..+.. .+.+..+....... +++ ..+++.++.|+.+ ..+.+||+.+.+.
T Consensus 63 ~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~-~~~-~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W 140 (301)
T 2vpj_A 63 DRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLA-GAT-TLGDMIYVSGGFDGSRRHTSMERYDPNIDQW 140 (301)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSC-EEE-EETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred CEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccce-eEE-EECCEEEEEcccCCCcccceEEEEcCCCCeE
Confidence 5566667654 358888887765 44443333221111 222 2366677777654 3588899877654
Q ss_pred eeeeeccCcceeEEEEeecCCceeeeeeecCC-----CCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEE
Q psy6859 81 INMIKLDFTPLTVECIHYLGDAIPTAAVSDQD-----SSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVS 155 (261)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (261)
...-..+...........+ +.++.. |+. ...+..||+.+.+-...-...... .-.++....+. +++.
T Consensus 141 ~~~~~~p~~r~~~~~~~~~-~~iyv~---GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-~~~~~~~~~~~---i~v~ 212 (301)
T 2vpj_A 141 SMLGDMQTAREGAGLVVAS-GVIYCL---GGYDGLNILNSVEKYDPHTGHWTNVTPMATKR-SGAGVALLNDH---IYVV 212 (301)
T ss_dssp EEEEECSSCCBSCEEEEET-TEEEEE---CCBCSSCBCCCEEEEETTTTEEEEECCCSSCC-BSCEEEEETTE---EEEE
T ss_pred EECCCCCCCcccceEEEEC-CEEEEE---CCCCCCcccceEEEEeCCCCcEEeCCCCCccc-ccceEEEECCE---EEEE
Confidence 4332222221112222223 333333 122 356889998877543322221111 11122222222 3555
Q ss_pred ecCC-----CeEEEEEccCCCc--cceeeccCcccCeEEEEEcCCCCEEEEEcCC-----CeEEEeeccc
Q psy6859 156 DQDS-----SHVHIYDCKGNGT--PLHVLDRLHTKPVVLIKFNPIYQVVVSVDKA-----GILEYWSGYK 213 (261)
Q Consensus 156 ~~~d-----~~i~i~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~ 213 (261)
|+.+ ..+.+||+. +.+ .+..+. ........+.+ ++++++.|+.+ ..+.+||+++
T Consensus 213 GG~~~~~~~~~v~~yd~~-~~~W~~~~~~p-~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~ 278 (301)
T 2vpj_A 213 GGFDGTAHLSSVEAYNIR-TDSWTTVTSMT-TPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPII 278 (301)
T ss_dssp CCBCSSSBCCCEEEEETT-TTEEEEECCCS-SCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTT
T ss_pred eCCCCCcccceEEEEeCC-CCcEEECCCCC-CcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCC
Confidence 5443 468899987 442 222221 11111122222 66777777655 3577888755
No 308
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.45 E-value=0.019 Score=42.69 Aligned_cols=190 Identities=6% Similarity=-0.018 Sum_probs=88.7
Q ss_pred CCeEEEecCC----CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeC----C-----CcEEEEEccccce
Q psy6859 14 TDFVITASND----GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVAS----D-----KAMKVFDVINFDM 80 (261)
Q Consensus 14 ~~~l~s~~~d----~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~----d-----g~v~~wd~~~~~~ 80 (261)
+.+++.|+.+ ..+.++|..+.....+..+...... .+++ ..++++++.|+. + ..+.+||+.+.+.
T Consensus 25 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W 102 (308)
T 1zgk_A 25 RLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSG-LAGC-VVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW 102 (308)
T ss_dssp CCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBS-CEEE-EETTEEEEECCEEEETTEEEECCCEEEEETTTTEE
T ss_pred CEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCccccc-ceEE-EECCEEEEECCCcCCCCCCeecceEEEECCCCCeE
Confidence 4566667632 3678888887644444332211111 1222 236667777765 2 3688899877654
Q ss_pred eeeeeccCcceeEEEEeecCCceeee-eeec-CCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecC
Q psy6859 81 INMIKLDFTPLTVECIHYLGDAIPTA-AVSD-QDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD 158 (261)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (261)
...-..+...........+ +.++.. ...+ ..-..+.+||+.+.+-...-........ .++... ++ .+++.|+.
T Consensus 103 ~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~~--~iyv~GG~ 177 (308)
T 1zgk_A 103 SPCAPMSVPRNRIGVGVID-GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIG-VGVAVL-NR--LLYAVGGF 177 (308)
T ss_dssp EECCCCSSCCBTCEEEEET-TEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBS-CEEEEE-TT--EEEEECCB
T ss_pred eECCCCCcCccccEEEEEC-CEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccc-eEEEEE-CC--EEEEEeCC
Confidence 3322222211111122223 333333 1110 0125688999887653332222111111 122222 22 23455543
Q ss_pred C-----CeEEEEEccCCCc--cceeeccCcccCeEEEEEcCCCCEEEEEcCC-----CeEEEeecccc
Q psy6859 159 S-----SHVHIYDCKGNGT--PLHVLDRLHTKPVVLIKFNPIYQVVVSVDKA-----GILEYWSGYKQ 214 (261)
Q Consensus 159 d-----~~i~i~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~ 214 (261)
+ ..+.+||+. +.+ .+..+. .....-..+.+ ++++++.|+.+ ..+.+||+.++
T Consensus 178 ~~~~~~~~~~~yd~~-~~~W~~~~~~p-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 241 (308)
T 1zgk_A 178 DGTNRLNSAECYYPE-RNEWRMITAMN-TIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETE 241 (308)
T ss_dssp CSSCBCCCEEEEETT-TTEEEECCCCS-SCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CCCCcCceEEEEeCC-CCeEeeCCCCC-CccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCC
Confidence 3 458889886 432 122221 11111222223 56677777654 45888888664
No 309
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.42 E-value=0.022 Score=42.63 Aligned_cols=194 Identities=7% Similarity=0.037 Sum_probs=108.8
Q ss_pred EEEEcC-CC-eEEEecCCCeEEEEeccCCceeeeEEeec----cc--cceeEEEE---eeCCCEEEEEe-----------
Q psy6859 8 HVVVTK-TD-FVITASNDGHIKFWKKQEEGIEFVKHFRS----HL--GVIHSICT---NYNGTLLCTVA----------- 65 (261)
Q Consensus 8 ~~~~~~-~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~----~~--~~v~~~~~---~~~~~~l~s~~----------- 65 (261)
+++|.+ .. ++++.-..++|..|+...+....+ .+.+ .+ ..+..|.| .|+++++++..
T Consensus 17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~ 95 (334)
T 2p9w_A 17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS 95 (334)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence 578887 44 455555789999999875432333 3332 11 13579999 58877777543
Q ss_pred --CCCcEEEEEcc---ccceeeeeeccC-------------cceeEEEEeecCCceeeeeeecCCC-CeEEEEEcCCCce
Q psy6859 66 --SDKAMKVFDVI---NFDMINMIKLDF-------------TPLTVECIHYLGDAIPTAAVSDQDS-SRVHIYDCKGNDM 126 (261)
Q Consensus 66 --~dg~v~~wd~~---~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~s~~~d-~~i~i~d~~~~~~ 126 (261)
.+..|..+|+. +++.+....+.. ....-+.+.++|+..++. +.. +.|...+.....
T Consensus 96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~----s~~~~~I~rV~pdG~~- 170 (334)
T 2p9w_A 96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAF----ALGMPAIARVSADGKT- 170 (334)
T ss_dssp SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEE----EESSCEEEEECTTSCC-
T ss_pred cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeC----CCCCCeEEEEeCCCCE-
Confidence 25779999998 787766554321 123345555666544443 334 556666655442
Q ss_pred eeEEeecC----CcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeecc---C---cccCeEEE-EEcCCCC
Q psy6859 127 INMIKLDF----TPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDR---L---HTKPVVLI-KFNPIYQ 195 (261)
Q Consensus 127 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~---~---~~~~v~~~-~~~~~~~ 195 (261)
+..+.... .......+.++|++.. +++..+ .+.+..+|+. ..... .+.. + .-.....| ....+|+
T Consensus 171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~-Liv~~~-~g~L~~fD~~-~pv~~-~v~~~~~G~~~~~~~~dgilp~~~~G~ 246 (334)
T 2p9w_A 171 VSTFAWESGNGGQRPGYSGITFDPHSNK-LIAFGG-PRALTAFDVS-KPYAW-PEPVKINGDFGTLSGTEKIVTVPVGNE 246 (334)
T ss_dssp EEEEEECCCCSSSCCSCSEEEEETTTTE-EEEESS-SSSEEEEECS-SSSCC-CEECEESSCCCCCTTEEEEEEEEETTE
T ss_pred EeeeeecCCCcccccCcceEEEeCCCCE-EEEEcC-CCeEEEEcCC-CCcce-eecccccCCcccccCcccccccccCCE
Confidence 22222111 1123568999999975 355555 9999999987 32220 1210 1 11223443 3345777
Q ss_pred E-EEEEcCCCeEEEeec
Q psy6859 196 V-VVSVDKAGILEYWSG 211 (261)
Q Consensus 196 ~-l~~~~~dg~i~iwd~ 211 (261)
. |++....+.+.+.+.
T Consensus 247 vllV~~~~~~~~~l~S~ 263 (334)
T 2p9w_A 247 SVLVGARAPYAISFRSW 263 (334)
T ss_dssp EEEEEEETTEEEEEECS
T ss_pred EEEEEcCCCCEEEEECC
Confidence 6 455555665555543
No 310
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.37 E-value=0.028 Score=42.84 Aligned_cols=235 Identities=10% Similarity=-0.017 Sum_probs=114.8
Q ss_pred CeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEee---ccccceeEEEEeeC---CCEEEEEeC----C----Cc
Q psy6859 5 PITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFR---SHLGVIHSICTNYN---GTLLCTVAS----D----KA 69 (261)
Q Consensus 5 ~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~---~~~~~v~~~~~~~~---~~~l~s~~~----d----g~ 69 (261)
.-..|+|.| ++ |+.+..+|.|++++. ++. +.+..+. ........|+++|+ +..|+.+.. + ..
T Consensus 30 ~P~~ia~~pdG~-l~V~e~~g~I~~~d~-~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 30 VPWSIAPLGGGR-YLVTERPGRLVLISP-SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp CEEEEEEEETTE-EEEEETTTEEEEECS-SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCeEEEEcCCCe-EEEEeCCCEEEEEeC-CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 356889999 65 555566699998873 332 3333221 12345789999997 445544433 2 56
Q ss_pred EEEEEcccc--c-----ee-eeee-ccCcceeEEEEeecCCceeeeeeec---------CCCCeEEEEEcCCCc------
Q psy6859 70 MKVFDVINF--D-----MI-NMIK-LDFTPLTVECIHYLGDAIPTAAVSD---------QDSSRVHIYDCKGND------ 125 (261)
Q Consensus 70 v~~wd~~~~--~-----~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~---------~~d~~i~i~d~~~~~------ 125 (261)
|..|+.... . .+ ..+. ...+....+.+.+++...++..-.+ ...+.|.-++....-
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf 186 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF 186 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence 777776543 1 11 1121 1112234566677775443320000 012455555554320
Q ss_pred -eeeEEeecCCcceEEEEEEeC-CCCceEEEEecC-CC--eEEEEEccCC---------------CccceeeccCcccCe
Q psy6859 126 -MINMIKLDFTPLTVECIHYLG-DAIPTAAVSDQD-SS--HVHIYDCKGN---------------GTPLHVLDRLHTKPV 185 (261)
Q Consensus 126 -~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-d~--~i~i~d~~~~---------------~~~~~~~~~~~~~~v 185 (261)
....+... . .....++|+| ++. + +++-.. +. .|.+...... ..++..+. ......
T Consensus 187 ~~~~i~a~G-~-rnp~Gla~d~~~g~-l-~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~-~~~~ap 261 (354)
T 3a9g_A 187 PNSPIWSYG-H-RNPQGIDWHRASGV-M-VATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTG-SETWAP 261 (354)
T ss_dssp TTCCEEEEC-C-SCCCEEEECTTTCC-E-EEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-TCCCCE
T ss_pred CCCcEEEEc-c-CCcceEEEeCCCCC-E-EEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecC-CCCcCC
Confidence 00111111 1 1235788888 454 2 333221 11 2333321100 01233331 123456
Q ss_pred EEEEEc-------CCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEee
Q psy6859 186 VLIKFN-------PIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTIS 258 (261)
Q Consensus 186 ~~~~~~-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 258 (261)
..++|. .+|.++++.-..+.|...++..... .......+.+....+..+++.|||.+.++..
T Consensus 262 ~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~-----------~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 262 SGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNME-----------VRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGC-----------EEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred cceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCc-----------ccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 788883 5677777766777888887753100 0000111222245788999999998766653
No 311
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.22 E-value=0.077 Score=44.89 Aligned_cols=191 Identities=12% Similarity=-0.005 Sum_probs=102.2
Q ss_pred CCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEe-eccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceee
Q psy6859 4 SPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHF-RSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMIN 82 (261)
Q Consensus 4 ~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~ 82 (261)
+.|++|.-....++-.|..+| +..||-... +..... ......|.++....++ .|..++.+| +..||..+.+...
T Consensus 22 n~V~~I~qD~~G~lWigT~~G-L~ryDG~~~--~~~~~~~~~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~ 96 (758)
T 3ott_A 22 SVVSCFLQDSEGLIWIGSNKG-LFSYDGYST--QQHFTYGENNNTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQ 96 (758)
T ss_dssp CCEEEEEECTTSCEEEEESSC-EEEECSSCE--EECSCTTSTTSSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECC
T ss_pred ceEEEEEECCCCCEEEEECCC-ccccCCCce--EEEEccCCCCCceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEEC
Confidence 568888887744566677776 445553221 111100 1123458888776666 566666655 7889987764432
Q ss_pred eeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEe--ecCCcceEEEEEEeCCCCceEEEEecCCC
Q psy6859 83 MIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIK--LDFTPLTVECIHYLGDAIPTAAVSDQDSS 160 (261)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 160 (261)
........+.. +......+..+ +.+ .+..+|..+++...... .......+.++....++. +..++. +
T Consensus 97 ~~~~~~~~i~~--i~~~~g~lWig----t~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~---lWigt~-~ 165 (758)
T 3ott_A 97 PETDFPTDVRT--MALQGDTLWLG----ALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQ---IYVGTY-N 165 (758)
T ss_dssp CSCCCCSCEEE--EEEETTEEEEE----ETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCC---EEEEET-T
T ss_pred cccCCCceEEE--EEecCCcEEEE----cCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCC---EEEEeC-C
Confidence 11111111222 22234445544 344 68889987665332201 111234577887777775 334444 4
Q ss_pred eEEEEEccCCCccceeeccC-----cccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859 161 HVHIYDCKGNGTPLHVLDRL-----HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK 213 (261)
Q Consensus 161 ~i~i~d~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 213 (261)
-+..||.. +.+. ..+... ....|.++...+++..|..|.. +-+..+|..+
T Consensus 166 Gl~~~~~~-~~~~-~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~ 220 (758)
T 3ott_A 166 GLCRYIPS-NGKF-EGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPST 220 (758)
T ss_dssp EEEEEETT-TTEE-EEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTT
T ss_pred CHhhCccC-CCce-EEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCC
Confidence 57788875 4432 222101 1234888888887765555554 3477888754
No 312
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.17 E-value=0.053 Score=42.02 Aligned_cols=148 Identities=11% Similarity=0.194 Sum_probs=93.2
Q ss_pred eeCCCEEEEEeCCCcEEEEEccccceeeeeecc----CcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCc-----
Q psy6859 55 NYNGTLLCTVASDKAMKVFDVINFDMINMIKLD----FTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGND----- 125 (261)
Q Consensus 55 ~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~----- 125 (261)
..+++.++.+ .++.||.-++......+.++.+ ...+..+.++++|+.++.. .+..|.+..+..+.
T Consensus 29 ~~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~-----g~~~V~Vv~LP~~~~~~~~ 102 (452)
T 3pbp_A 29 SQNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLF-----NDNEIFVMEVPWGYSNVED 102 (452)
T ss_dssp ETTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEE-----CSSEEEEEECCTTCSCCCC
T ss_pred EcCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEe-----cCCeEEEEEecCccccCcc
Confidence 3466666664 4467888887755445555544 2235567888888877765 67899999887321
Q ss_pred -------eeeEEeecC----CcceEEEEEEeCCCCc-eEEEEecCCCeEEEEEccCC-Cccceeec--------cCcccC
Q psy6859 126 -------MINMIKLDF----TPLTVECIHYLGDAIP-TAAVSDQDSSHVHIYDCKGN-GTPLHVLD--------RLHTKP 184 (261)
Q Consensus 126 -------~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~i~d~~~~-~~~~~~~~--------~~~~~~ 184 (261)
..+.+.... .+..|..+.|+|-+.. ..+++-..|+.|++||+... .++. .+. ......
T Consensus 103 ~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~e 181 (452)
T 3pbp_A 103 VSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVND 181 (452)
T ss_dssp HHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCC
T ss_pred cccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccce
Confidence 112233221 2457999999997543 12555567999999999831 1232 222 123367
Q ss_pred eEEEEEcCCCCEEEE--EcCCCeEEEe
Q psy6859 185 VVLIKFNPIYQVVVS--VDKAGILEYW 209 (261)
Q Consensus 185 v~~~~~~~~~~~l~~--~~~dg~i~iw 209 (261)
|.+++|.+++-.|+. .++.|.|+-.
T Consensus 182 v~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 182 ITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred EEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 899999998875655 5588877543
No 313
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.12 E-value=0.053 Score=41.22 Aligned_cols=196 Identities=16% Similarity=0.136 Sum_probs=104.2
Q ss_pred EEEEEcCCCeEEEec-------------CCCeEEEEeccCC--ceeeeEEeec-----cccceeEEEEee--CCC-EEEE
Q psy6859 7 THVVVTKTDFVITAS-------------NDGHIKFWKKQEE--GIEFVKHFRS-----HLGVIHSICTNY--NGT-LLCT 63 (261)
Q Consensus 7 ~~~~~~~~~~l~s~~-------------~d~~i~iw~~~~~--~~~~~~~~~~-----~~~~v~~~~~~~--~~~-~l~s 63 (261)
-.++..|...+++++ .+|.|.++|.++. ..+.+ .+.+ ..-....+.+.+ +++ +|+.
T Consensus 53 EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 53 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp CEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred ceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 355666733444443 6899999998743 22222 2222 223567777766 454 4444
Q ss_pred Ee-C--CCcEEEEEccccc----eeeeeecc-CcceeEEEEeecCCceeeee--ee-----------cCCCCeEEEEEcC
Q psy6859 64 VA-S--DKAMKVFDVINFD----MINMIKLD-FTPLTVECIHYLGDAIPTAA--VS-----------DQDSSRVHIYDCK 122 (261)
Q Consensus 64 ~~-~--dg~v~~wd~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~s-----------~~~d~~i~i~d~~ 122 (261)
+. . +.++.+|++.... .+..+... ........+.+++...++-. ++ +...+.|.-+|.
T Consensus 132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~- 210 (355)
T 3sre_A 132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP- 210 (355)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT-
T ss_pred EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC-
Confidence 43 2 4678888876532 22222211 12234455556655333210 11 012355666665
Q ss_pred CCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCcc--ceeeccCcccCeEEEEEcC-CCCEEEE
Q psy6859 123 GNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTP--LHVLDRLHTKPVVLIKFNP-IYQVVVS 199 (261)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~l~~ 199 (261)
++....... -.....++|+|++.. ++++-+..+.|..|++...+.. .+.+. .....-.+++++ +|++.++
T Consensus 211 -~~~~~~~~~---l~~pNGia~spDg~~-lYvadt~~~~I~~~~~~~~g~l~~~~~~~--~~g~PDGi~vD~e~G~lwva 283 (355)
T 3sre_A 211 -NDVRVVAEG---FDFANGINISPDGKY-VYIAELLAHKIHVYEKHANWTLTPLRVLS--FDTLVDNISVDPVTGDLWVG 283 (355)
T ss_dssp -TCCEEEEEE---ESSEEEEEECTTSSE-EEEEEGGGTEEEEEEECTTSCEEEEEEEE--CSSEEEEEEECTTTCCEEEE
T ss_pred -CeEEEeecC---CcccCcceECCCCCE-EEEEeCCCCeEEEEEECCCCcEecCEEEe--CCCCCceEEEeCCCCcEEEE
Confidence 332222221 124578999999985 4566667899999999733332 22332 245667889999 5987665
Q ss_pred EcCC-CeEEEeec
Q psy6859 200 VDKA-GILEYWSG 211 (261)
Q Consensus 200 ~~~d-g~i~iwd~ 211 (261)
+..+ +.|..|+.
T Consensus 284 ~~~~g~~v~~~~P 296 (355)
T 3sre_A 284 CHPNGMRIFFYDA 296 (355)
T ss_dssp EESCHHHHHSCCT
T ss_pred ecCCceEEEEECC
Confidence 5434 33444443
No 314
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.12 E-value=0.047 Score=40.56 Aligned_cols=186 Identities=8% Similarity=0.014 Sum_probs=87.5
Q ss_pred CCeEEEecC----C-----CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCC-----CcEEEEEccccc
Q psy6859 14 TDFVITASN----D-----GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASD-----KAMKVFDVINFD 79 (261)
Q Consensus 14 ~~~l~s~~~----d-----~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----g~v~~wd~~~~~ 79 (261)
+.+++.|+. + ..+.+||..+...+.+..+....... +++ .-+++.++.|+.+ ..+.+||+.+.+
T Consensus 71 ~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 148 (308)
T 1zgk_A 71 GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRI-GVG-VIDGHIYAVGGSHGCIHHNSVERYEPERDE 148 (308)
T ss_dssp TEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTC-EEE-EETTEEEEECCEETTEECCCEEEEETTTTE
T ss_pred CEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCcccc-EEE-EECCEEEEEcCCCCCcccccEEEECCCCCe
Confidence 456666665 2 35778888776444443332211111 222 2366677777643 358889988765
Q ss_pred eeeeeeccCcceeEEEEeecCCceeeeeeecCC-----CCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEE
Q psy6859 80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD-----SSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAV 154 (261)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (261)
....-..+........... ++.++.. |+. ...+.+||+.+.+-...-...... .-.++.... +. +++
T Consensus 149 W~~~~~~p~~r~~~~~~~~-~~~iyv~---GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~~~~~-~~--iyv 220 (308)
T 1zgk_A 149 WHLVAPMLTRRIGVGVAVL-NRLLYAV---GGFDGTNRLNSAECYYPERNEWRMITAMNTIR-SGAGVCVLH-NC--IYA 220 (308)
T ss_dssp EEECCCCSSCCBSCEEEEE-TTEEEEE---CCBCSSCBCCCEEEEETTTTEEEECCCCSSCC-BSCEEEEET-TE--EEE
T ss_pred EeECCCCCccccceEEEEE-CCEEEEE---eCCCCCCcCceEEEEeCCCCeEeeCCCCCCcc-ccceEEEEC-CE--EEE
Confidence 4433222222111122222 3334333 122 356889998876533221111111 111222222 22 355
Q ss_pred EecCC-----CeEEEEEccCCCc--cceeeccCcccCeEEEEEcCCCCEEEEEcCC-----CeEEEeeccc
Q psy6859 155 SDQDS-----SHVHIYDCKGNGT--PLHVLDRLHTKPVVLIKFNPIYQVVVSVDKA-----GILEYWSGYK 213 (261)
Q Consensus 155 ~~~~d-----~~i~i~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~ 213 (261)
.|+.+ ..+.+||+. +.+ .+..+. ........+.+ ++++++.|+.+ ..+.+||+.+
T Consensus 221 ~GG~~~~~~~~~v~~yd~~-~~~W~~~~~~p-~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~ 287 (308)
T 1zgk_A 221 AGGYDGQDQLNSVERYDVE-TETWTFVAPMK-HRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDT 287 (308)
T ss_dssp ECCBCSSSBCCCEEEEETT-TTEEEECCCCS-SCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred EeCCCCCCccceEEEEeCC-CCcEEECCCCC-CCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCC
Confidence 55443 568899987 442 222221 11111122222 56777777644 3567788754
No 315
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.08 E-value=0.077 Score=42.28 Aligned_cols=157 Identities=11% Similarity=-0.011 Sum_probs=88.8
Q ss_pred eeEEEEee-CCCEEEEEeC-CCcEEEEEccccceeeeeeccC---cceeEEEE-------eecCCceeeeeeecCCC---
Q psy6859 49 IHSICTNY-NGTLLCTVAS-DKAMKVFDVINFDMINMIKLDF---TPLTVECI-------HYLGDAIPTAAVSDQDS--- 113 (261)
Q Consensus 49 v~~~~~~~-~~~~l~s~~~-dg~v~~wd~~~~~~~~~~~~~~---~~~~~~~~-------~~~~~~~~~~~~s~~~d--- 113 (261)
...|+|+| +...|+.+.. .+.|++.|+.++.......... .....+++ .++++.++... ..+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad---~~~~~~ 217 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAI---DYDGKG 217 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEE---CCCTTG
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEe---CCCCCc
Confidence 35789997 3444554443 4678888987766554443321 22455666 67777555441 222
Q ss_pred ---CeEEEEEcCC-Ccee-----eEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccC------CCcc-----
Q psy6859 114 ---SRVHIYDCKG-NDMI-----NMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKG------NGTP----- 173 (261)
Q Consensus 114 ---~~i~i~d~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~------~~~~----- 173 (261)
..|.+++... +... ..+.... ....++.+|+... ++++...++.|..+|+.. ++..
T Consensus 218 ~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~---~p~giavdp~~g~-LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~ 293 (496)
T 3kya_A 218 DESPSVYIIKRNADGTFDDRSDIQLIAAYK---QCNGATIHPINGE-LYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIV 293 (496)
T ss_dssp GGEEEEEEEECCTTSCCSTTSCEEEEEEES---CCCCEEECTTTCC-EEEEETTTTEEEEECHHHHHHHHHTTCCCCCBG
T ss_pred ccCceEEEEecCCCCceeecccceeeccCC---CceEEEEcCCCCe-EEEEECCCCEEEEEecccccccccCceeecccc
Confidence 2366666443 2221 2222111 2356778886554 466667788999999861 1221
Q ss_pred ------cee-eccCcccCeEEEEEcCCCCEEEE-EcCCCeEEEeecc
Q psy6859 174 ------LHV-LDRLHTKPVVLIKFNPIYQVVVS-VDKAGILEYWSGY 212 (261)
Q Consensus 174 ------~~~-~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~ 212 (261)
... +..+.......|+|+|+|++|+. -.....|+.++..
T Consensus 294 ~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 294 KNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp GGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 111 21123345689999999996544 4567788886653
No 316
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.07 E-value=0.061 Score=40.84 Aligned_cols=68 Identities=7% Similarity=0.015 Sum_probs=36.3
Q ss_pred CCCeEEEecC-CCeEEEEeccC--CceeeeEEee-ccccceeEEEEeeCCCEEEEEeC-C---------CcEEEEEcccc
Q psy6859 13 KTDFVITASN-DGHIKFWKKQE--EGIEFVKHFR-SHLGVIHSICTNYNGTLLCTVAS-D---------KAMKVFDVINF 78 (261)
Q Consensus 13 ~~~~l~s~~~-d~~i~iw~~~~--~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~-d---------g~v~~wd~~~~ 78 (261)
.+.+++.|+. ...+.++|... .....+..+. ..... .+++ .-++++++.|+. + ..+.+||+.+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~-~~~~-~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQ-ATSA-FIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBS-CEEE-EETTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCcc-ceEE-EECCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 3555566654 34678888863 3333333332 11111 1222 236667777765 2 46889998876
Q ss_pred ceee
Q psy6859 79 DMIN 82 (261)
Q Consensus 79 ~~~~ 82 (261)
+...
T Consensus 97 ~W~~ 100 (357)
T 2uvk_A 97 SWVK 100 (357)
T ss_dssp EEEE
T ss_pred cEEE
Confidence 5443
No 317
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.02 E-value=0.061 Score=40.12 Aligned_cols=187 Identities=10% Similarity=0.051 Sum_probs=82.4
Q ss_pred eEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeC----CC-------cEEEEEccccceeeee
Q psy6859 16 FVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVAS----DK-------AMKVFDVINFDMINMI 84 (261)
Q Consensus 16 ~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~----dg-------~v~~wd~~~~~~~~~~ 84 (261)
+++.|+. .+..||..+..... .................+++.++.|+. ++ .+..||..+.+....-
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 94 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP 94 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEE-EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECS
T ss_pred hhhcccc--ceEEECCCCCceec-ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECC
Confidence 4555553 47899998874433 122211111222233457778888873 12 1677888776544322
Q ss_pred eccCcceeEEEEeecCCceeee-eeec---CCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecC--
Q psy6859 85 KLDFTPLTVECIHYLGDAIPTA-AVSD---QDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD-- 158 (261)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~-~~s~---~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 158 (261)
..+...........+ +.++.. .... .....+.+||+.+.+-...-.... +..-.++... ++. +++.|+.
T Consensus 95 ~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~-~~~--iyv~GG~~~ 169 (318)
T 2woz_A 95 PLPSARCLFGLGEVD-DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPI-KVYGHNVISH-NGM--IYCLGGKTD 169 (318)
T ss_dssp CBSSCBCSCEEEEET-TEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSS-CEESCEEEEE-TTE--EEEECCEES
T ss_pred CCCccccccceEEEC-CEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCC-cccccEEEEE-CCE--EEEEcCCCC
Confidence 222211111122223 333332 1110 011357888988765333222111 1111122222 222 2444442
Q ss_pred ----CCeEEEEEccCCCc--cceeeccCcccCeEEEEEcCCCCEEEEEcCC-----CeEEEeecccc
Q psy6859 159 ----SSHVHIYDCKGNGT--PLHVLDRLHTKPVVLIKFNPIYQVVVSVDKA-----GILEYWSGYKQ 214 (261)
Q Consensus 159 ----d~~i~i~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~ 214 (261)
-..+.+||.. +.+ .+..+. ........+.+ ++++++.|+.+ ..+.+||+.++
T Consensus 170 ~~~~~~~~~~yd~~-~~~W~~~~~~p-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 232 (318)
T 2woz_A 170 DKKCTNRVFIYNPK-KGDWKDLAPMK-TPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTN 232 (318)
T ss_dssp SSCBCCCEEEEETT-TTEEEEECCCS-SCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred CCCccceEEEEcCC-CCEEEECCCCC-CCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCC
Confidence 2458899987 442 122221 11111122222 56666666543 24667887654
No 318
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.94 E-value=0.074 Score=39.77 Aligned_cols=196 Identities=10% Similarity=0.076 Sum_probs=110.6
Q ss_pred EEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccc-cceeeeeecc
Q psy6859 10 VVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVIN-FDMINMIKLD 87 (261)
Q Consensus 10 ~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~-~~~~~~~~~~ 87 (261)
-.+| .+.+|.-. ..++.|+|+++. +.++.+.- ...|.--.|-.+. .|+-.+. ..|+-|++.. ..+.+.+..+
T Consensus 73 IMnP~~~ViALra-g~~LQiFnletK--~klks~~~-~e~VvfWkWis~~-~L~lVT~-taVyHWs~~~~s~P~kvFdR~ 146 (365)
T 2xzh_A 73 IMNPASKVIALKA-GKTLQIFNIEMK--SKMKAHTM-TDDVTFWKWISLN-TVALVTD-NAVYHWSMEGESQPVKMFDRH 146 (365)
T ss_dssp EECSSSSEEEEEE-TTEEEEEETTTT--EEEEEEEC-SSCEEEEEECSSS-EEEEEES-SEEEEEESSTTCCCEEEEECC
T ss_pred eeCCCccEEEEec-CCeEEEechHHh--hhhcceec-CCccEEEEecCCC-eEEEEcC-CcEEEEcccCCCCCceeeecc
Confidence 3577 56666554 689999999987 66666653 3566666675443 5555443 4799999864 3455555533
Q ss_pred C----cceeEEEEeecCCceeeeeeecC---CCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCce-EEEE---e
Q psy6859 88 F----TPLTVECIHYLGDAIPTAAVSDQ---DSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPT-AAVS---D 156 (261)
Q Consensus 88 ~----~~~~~~~~~~~~~~~~~~~~s~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~ 156 (261)
. ..+......++.++++.+..+.. -.|.+.+|..+.+ .-+.++.+ ......+....+.... ++.- .
T Consensus 147 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGh--aa~F~~~~~~g~~~~~~lf~fa~r~ 223 (365)
T 2xzh_A 147 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGH--AASFAQFKMEGNAEESTLFCFAVRG 223 (365)
T ss_dssp GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCS--EEEEEEECCTTCSSCEEEEEEEEEE
T ss_pred hhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceeeee--eeeeEEEecCCCCCCceEEEEEEec
Confidence 2 22333344455666666555422 2367889998765 33334332 1111122211111111 1111 1
Q ss_pred cCCCeEEEEEccCC--Cccc---ee----ec-cCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccc
Q psy6859 157 QDSSHVHIYDCKGN--GTPL---HV----LD-RLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQ 214 (261)
Q Consensus 157 ~~d~~i~i~d~~~~--~~~~---~~----~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 214 (261)
...+++++.++... +.+. +. +. .....-.-++..++....++.-+.-|.|++||++++
T Consensus 224 ~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTg 291 (365)
T 2xzh_A 224 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG 291 (365)
T ss_dssp TTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC
T ss_pred CCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccC
Confidence 12258999998522 1111 11 11 122455678888888888888889999999999653
No 319
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.83 E-value=0.09 Score=39.12 Aligned_cols=107 Identities=7% Similarity=0.094 Sum_probs=52.7
Q ss_pred CCeEEEecC-----C------CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCC--------CcEEEEE
Q psy6859 14 TDFVITASN-----D------GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASD--------KAMKVFD 74 (261)
Q Consensus 14 ~~~l~s~~~-----d------~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d--------g~v~~wd 74 (261)
+.+++.|+. . ..+.+||..+...+.+..+...... .+++. -+++.++.|+.+ ..+.+||
T Consensus 46 ~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d 123 (315)
T 4asc_A 46 NQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCL-FGLGE-ALNSIYVVGGREIKDGERCLDSVMCYD 123 (315)
T ss_dssp CCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEES-CEEEE-ETTEEEEECCEESSTTCCBCCCEEEEE
T ss_pred CEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhc-eeEEE-ECCEEEEEeCCcCCCCCcccceEEEEC
Confidence 666777763 1 1266778777644333322211111 12222 266677777642 3588999
Q ss_pred ccccceeeeeeccCcceeEEEEeecCCceeeeeeecCC------CCeEEEEEcCCCce
Q psy6859 75 VINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD------SSRVHIYDCKGNDM 126 (261)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------d~~i~i~d~~~~~~ 126 (261)
+.+.+....-..+...........+ +.++.. |+. -..+.+||+.+.+-
T Consensus 124 ~~~~~W~~~~~~p~~r~~~~~~~~~-~~iyv~---GG~~~~~~~~~~~~~yd~~~~~W 177 (315)
T 4asc_A 124 RLSFKWGESDPLPYVVYGHTVLSHM-DLVYVI---GGKGSDRKCLNKMCVYDPKKFEW 177 (315)
T ss_dssp TTTTEEEECCCCSSCCBSCEEEEET-TEEEEE---CCBCTTSCBCCCEEEEETTTTEE
T ss_pred CCCCcEeECCCCCCcccceeEEEEC-CEEEEE---eCCCCCCcccceEEEEeCCCCeE
Confidence 8876543322222222222222233 334333 122 25789999987643
No 320
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.82 E-value=0.093 Score=39.10 Aligned_cols=110 Identities=12% Similarity=0.108 Sum_probs=52.9
Q ss_pred CCeEEEecC----CC-------eEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCC-------CcEEEEEc
Q psy6859 14 TDFVITASN----DG-------HIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASD-------KAMKVFDV 75 (261)
Q Consensus 14 ~~~l~s~~~----d~-------~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-------g~v~~wd~ 75 (261)
+.+++.|+. ++ .+.++|..+.....+..+...... .+++. -+++.++.|+.+ ..+.+||+
T Consensus 57 ~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~ 134 (318)
T 2woz_A 57 NQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL-FGLGE-VDDKIYVVAGKDLQTEASLDSVLCYDP 134 (318)
T ss_dssp SCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS-CEEEE-ETTEEEEEEEEBTTTCCEEEEEEEEET
T ss_pred CEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc-cceEE-ECCEEEEEcCccCCCCcccceEEEEeC
Confidence 667777773 12 166778777644433332221111 12222 366677777754 24778888
Q ss_pred cccceeeeeeccCcceeEEEEeecCCceeee-eeec--CCCCeEEEEEcCCCce
Q psy6859 76 INFDMINMIKLDFTPLTVECIHYLGDAIPTA-AVSD--QDSSRVHIYDCKGNDM 126 (261)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~--~~d~~i~i~d~~~~~~ 126 (261)
.+.+....-..+...........+ +.++.. .... ..-..+.+||+.+.+-
T Consensus 135 ~~~~W~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~yd~~~~~W 187 (318)
T 2woz_A 135 VAAKWSEVKNLPIKVYGHNVISHN-GMIYCLGGKTDDKKCTNRVFIYNPKKGDW 187 (318)
T ss_dssp TTTEEEEECCCSSCEESCEEEEET-TEEEEECCEESSSCBCCCEEEEETTTTEE
T ss_pred CCCCEeECCCCCCcccccEEEEEC-CEEEEEcCCCCCCCccceEEEEcCCCCEE
Confidence 776544332222221222222233 334333 1110 0134689999988753
No 321
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=96.78 E-value=0.077 Score=46.12 Aligned_cols=75 Identities=16% Similarity=0.158 Sum_probs=53.5
Q ss_pred ceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccC-----cceeEEEEeecCCceeeeeeecCCCCeEEEEEcC
Q psy6859 48 VIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDF-----TPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCK 122 (261)
Q Consensus 48 ~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~ 122 (261)
.+.+++..++..++++-+.|+++|+|++.+++++.+..+.. .........+.....+.+.++...++.+++|.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~~~~~~~~~~~~~~~~~~~~~~i~v~~s~~~~g~F~~~~~~ 316 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQTILPLQSFPYLTSDHTTNSFIALYYPDNSHGSFSIYKLN 316 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECCCCCCCSCCCCCEEECSSSTTEEEEEECCSSSCEEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecccccCCccccccccccCCCcccEEEEEEcCCCCcEEEEEEEe
Confidence 45667777788899999999999999999999888765321 1122233444445555666677778888888764
No 322
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.63 E-value=0.35 Score=43.09 Aligned_cols=223 Identities=9% Similarity=0.093 Sum_probs=111.5
Q ss_pred eEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeC------CCEEEEEeC-CCcEEEEEcccc
Q psy6859 6 ITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYN------GTLLCTVAS-DKAMKVFDVINF 78 (261)
Q Consensus 6 v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~s~~~-dg~v~~wd~~~~ 78 (261)
|...+.+. .+++.++ .+.+.+++++.+......... -...|.|+++.|. +++++.|.. |++++++++.+.
T Consensus 516 I~~As~n~-~~vvva~-g~~l~~fel~~~~L~~~~~~~-l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l 592 (1158)
T 3ei3_A 516 ISVASCNS-SQVVVAV-GRALYYLQIHPQELRQISHTE-MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSF 592 (1158)
T ss_dssp CCEEEECS-SEEEEEE-TTEEEEEEEETTEEEEEEEEE-CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTC
T ss_pred EEEEEeCC-CEEEEEE-CCEEEEEEeeCCceeeecccC-CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCC
Confidence 44444333 2444444 567777777754333333322 3467999998753 368999886 999999999877
Q ss_pred ceeeeeeccC--cceeEEEEeecCCceeeeeeecCCCCeEEEEEcC--CCceeeE--EeecCCcceEEEEEEeCCCCceE
Q psy6859 79 DMINMIKLDF--TPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCK--GNDMINM--IKLDFTPLTVECIHYLGDAIPTA 152 (261)
Q Consensus 79 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 152 (261)
+.+....+.. .|..++.....+... .+.|-.||.+.-+.+. +++.... ......|..... +...+...+
T Consensus 593 ~~~~~~~L~~~~~p~si~l~~~~~~~~---L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~--~~~~~~~~V 667 (1158)
T 3ei3_A 593 ELLHKEMLGGEIIPRSILMTTFESSHY---LLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRT--FRSLSTTNV 667 (1158)
T ss_dssp CEEEEEECCSSCCEEEEEEEEETTEEE---EEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEE--EESSSCEEE
T ss_pred CeEEEEECCCCCCCcEEEEEEeCCCcE---EEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEE--EeeCCceeE
Confidence 6665544432 333333333322211 1233578887655543 4443322 222223333332 333343333
Q ss_pred EEEecCCCeEEEEEccCCCccc-eeeccCcccCeE-EEEEcCCC--CEEEEEcCCCeEEEeecccccccCCeeeeeeccc
Q psy6859 153 AVSDQDSSHVHIYDCKGNGTPL-HVLDRLHTKPVV-LIKFNPIY--QVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKL 228 (261)
Q Consensus 153 ~~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~v~-~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 228 (261)
++++ +....+|.-+ ++.. ..+ .-..+. ...|+... .-++..+ ++.++|..++.- .
T Consensus 668 ~a~s--~rp~liy~~~--~~l~~s~l---~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~-------------~ 726 (1158)
T 3ei3_A 668 FACS--DRPTVIYSSN--HKLVFSNV---NLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEI-------------Q 726 (1158)
T ss_dssp EEES--SSCEEEEESS--SSEEEEEB---SSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCS-------------S
T ss_pred EEEC--CCCEEEEEcC--CceEEecc---ChHHhceEeccCcccCCCcEEEEc-CCceEEEEeccc-------------C
Confidence 4443 3444444433 2221 111 112232 33454321 2344444 445999887431 0
Q ss_pred ccceeecCCCccceeeeeECCCCceEEEee
Q psy6859 229 DTDLFEFAKNKTYPSGLSFSPDGNKFVTIS 258 (261)
Q Consensus 229 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 258 (261)
.-.++.+. -...+..++++|+.+.++.+.
T Consensus 727 ~~~~~~ip-L~~Tprri~y~~~~~~~~v~~ 755 (1158)
T 3ei3_A 727 KLHIRTVP-LYESPRKICYQEVSQCFGVLS 755 (1158)
T ss_dssp SEEEEEEE-CSSEEEEEEEEGGGTEEEEEE
T ss_pred CeeEEEEe-CCCCceEEEEcCCCCEEEEEE
Confidence 11222222 234678888888877665543
No 323
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.60 E-value=0.36 Score=42.97 Aligned_cols=136 Identities=9% Similarity=0.122 Sum_probs=71.9
Q ss_pred cEEEEEccccceeeeeeccCcc--eeEEEEeecC---Cceeee-eee-c----CCCCeEEEEEcCCCceeeEEeecCCcc
Q psy6859 69 AMKVFDVINFDMINMIKLDFTP--LTVECIHYLG---DAIPTA-AVS-D----QDSSRVHIYDCKGNDMINMIKLDFTPL 137 (261)
Q Consensus 69 ~v~~wd~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~-~~s-~----~~d~~i~i~d~~~~~~~~~~~~~~~~~ 137 (261)
.+++.|..+.+.+..+++.... .++..+...+ ..++.+ ++. + ...|.|.+|++..++.....+.. -.+
T Consensus 808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~-v~g 886 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKE-VKG 886 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEE-ESS
T ss_pred EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEE-cCC
Confidence 3677777777766666554432 2222222221 223222 111 1 14688999999755433322222 344
Q ss_pred eEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecc
Q psy6859 138 TVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGY 212 (261)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 212 (261)
.+.+++--.. + +++|- ..++++|++. ..+.++ .+..+-..|..+.....+.+++.|+.-..+.++..+
T Consensus 887 ~v~al~~~~g--~--Lla~i-g~~l~vy~l~-~~~~L~-~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~ 954 (1158)
T 3ei3_A 887 AVYSMVEFNG--K--LLASI-NSTVRLYEWT-TEKELR-TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYK 954 (1158)
T ss_dssp CEEEEEEETT--E--EEEEE-TTEEEEEEEC-TTSCEE-EEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEE
T ss_pred cCEEEeeeCC--E--EEEEc-CCEEEEEECC-CCceEE-EEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEE
Confidence 6777775543 2 33333 5789999998 444444 210111123333343457788888877777776643
No 324
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.27 E-value=0.25 Score=37.45 Aligned_cols=54 Identities=7% Similarity=0.103 Sum_probs=28.8
Q ss_pred CCCeEEEecC-C---------CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCC
Q psy6859 13 KTDFVITASN-D---------GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASD 67 (261)
Q Consensus 13 ~~~~l~s~~~-d---------~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 67 (261)
.+.+++.|+. + ..+.+||..+.....+.... ........+...++++++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHA-PMGMAGHVTFVHNGKAYVTGGVN 128 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCC-SSCCSSEEEEEETTEEEEEECCC
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCC-CcccccceEEEECCEEEEEeCcC
Confidence 3556666665 2 35788888876444443332 01111122223577788888754
No 325
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.25 E-value=0.39 Score=39.62 Aligned_cols=159 Identities=8% Similarity=-0.078 Sum_probs=93.1
Q ss_pred cceeEEEEeeCCCEEEEE-eCCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCc
Q psy6859 47 GVIHSICTNYNGTLLCTV-ASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGND 125 (261)
Q Consensus 47 ~~v~~~~~~~~~~~l~s~-~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~ 125 (261)
..+.+++|.+.+..|+.+ ...+.|+.+++........+.........+++.+.++.++.. -+..+.|.+.++....
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~t---D~~~~~I~v~~~~G~~ 425 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWT---DTGTDRIEVTRLNGTM 425 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEE---ETTTTEEEEEETTSCS
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEE---eCCCCcEEEEeCCCCe
Confidence 346788998855555544 457788888876433222222222223345565544544433 2567889999987654
Q ss_pred eeeEEeecCCcceEEEEEEeCCCCceEEEEe-cCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEc-CC
Q psy6859 126 MINMIKLDFTPLTVECIHYLGDAIPTAAVSD-QDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVD-KA 203 (261)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d 203 (261)
. ..+.. ..-.....+++.|.... ++++- +....|...++. +.....+....-...+.|++++++..|+.+. ..
T Consensus 426 ~-~~l~~-~~l~~P~~iavdp~~G~-ly~tD~g~~~~I~r~~~d--G~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~ 500 (619)
T 3s94_A 426 R-KILIS-EDLEEPRAIVLDPMVGY-MYWTDWGEIPKIERAALD--GSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKT 500 (619)
T ss_dssp C-EEEEC-TTCCSEEEEEEETTTTE-EEEEECSSSCEEEEEETT--SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred E-EEEEE-CCCCCeeeEEEEcCCCc-EEEecCCCCCEEEEEccC--CCccEEEEeCCCCCCeeeEEcccCCEEEEEECCC
Confidence 3 23321 12335689999987443 34443 234677777775 3333333213345678999999777665554 56
Q ss_pred CeEEEeeccc
Q psy6859 204 GILEYWSGYK 213 (261)
Q Consensus 204 g~i~iwd~~~ 213 (261)
+.|..+++..
T Consensus 501 ~~I~~~~~dG 510 (619)
T 3s94_A 501 DKIEVMNTDG 510 (619)
T ss_dssp TEEEEEESSS
T ss_pred CEEEEEecCC
Confidence 7788888753
No 326
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.25 E-value=0.26 Score=37.47 Aligned_cols=62 Identities=13% Similarity=0.050 Sum_probs=37.4
Q ss_pred cCeEEEEEcC-------CCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEE
Q psy6859 183 KPVVLIKFNP-------IYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFV 255 (261)
Q Consensus 183 ~~v~~~~~~~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 255 (261)
..+..+.|.+ +|+++++.-..+.|...++..+.. ..+ ...+......+..+++.|||.+++
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~-----------~~~-~~~~~~~~~rp~~v~~~pdG~lyv 338 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKV-----------TED-GRILTDRGQRIRDVRTGPDGYLYV 338 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEE-----------EEE-EEESGGGCCCEEEEEECTTSCEEE
T ss_pred cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeE-----------eee-EEcccCCCCceeEEEECCCCcEEE
Confidence 4567788764 466777766777777777653210 000 011122235789999999998766
Q ss_pred E
Q psy6859 256 T 256 (261)
Q Consensus 256 s 256 (261)
+
T Consensus 339 ~ 339 (353)
T 2g8s_A 339 L 339 (353)
T ss_dssp E
T ss_pred E
Confidence 4
No 327
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.23 E-value=0.1 Score=39.71 Aligned_cols=107 Identities=15% Similarity=0.186 Sum_probs=59.5
Q ss_pred eEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeec--cCcccCeEEEEEcCC---CCEEEEEcC-C-----CeE
Q psy6859 138 TVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD--RLHTKPVVLIKFNPI---YQVVVSVDK-A-----GIL 206 (261)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~v~~~~~~~~---~~~l~~~~~-d-----g~i 206 (261)
....+++.|++. ++++ ...+.|++++ ......+..+. .........|+++|+ +..|+.+.. . +.|
T Consensus 32 ~P~~ia~~pdG~--l~V~-e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 32 VPWALAFLPDGG--MLIA-ERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp CEEEEEECTTSC--EEEE-ETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CceEEEEcCCCe--EEEE-eCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 457899999997 2444 4569999998 31222222221 022456899999998 555544332 2 567
Q ss_pred EEeecccccccCCeeeeeecccccc-eeecC---CCccceeeeeECCCCceEEEee
Q psy6859 207 EYWSGYKQEFKFPKCVHFESKLDTD-LFEFA---KNKTYPSGLSFSPDGNKFVTIS 258 (261)
Q Consensus 207 ~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~v~~~~~s~~~~~l~s~~ 258 (261)
..++...+... ..+. +..+. ........++|.|||.+.++.+
T Consensus 108 ~r~~~~~~~~~----------~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 108 VRLRHLGERGV----------LDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEEECSSCEE----------EEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEEEeCCCCcC----------ceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 77776432110 0111 11122 1112346899999997776644
No 328
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.22 E-value=0.45 Score=39.90 Aligned_cols=198 Identities=10% Similarity=0.080 Sum_probs=94.2
Q ss_pred CCeEEEecCC----CeEEEEeccCCceeeeE-Eee---cccc-ceeEEEEee-CCCEEEEEeCCC------cEEEEEccc
Q psy6859 14 TDFVITASND----GHIKFWKKQEEGIEFVK-HFR---SHLG-VIHSICTNY-NGTLLCTVASDK------AMKVFDVIN 77 (261)
Q Consensus 14 ~~~l~s~~~d----~~i~iw~~~~~~~~~~~-~~~---~~~~-~v~~~~~~~-~~~~l~s~~~dg------~v~~wd~~~ 77 (261)
+.+++.|+.+ ..+.+||..+.....+. .+. .... .-.+++..+ +++.++.|+.++ .+.+||..+
T Consensus 398 ~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t 477 (695)
T 2zwa_A 398 NDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKT 477 (695)
T ss_dssp SCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTT
T ss_pred CEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCC
Confidence 5667777653 45778888876544443 210 0111 112333333 777778877543 578899887
Q ss_pred cceeeeeeccCcceeEEEEeecCCceeeeeeecCCC--CeEEEEEcCCCceeeEEe---ecCCcceEEEEEEeCCCCceE
Q psy6859 78 FDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS--SRVHIYDCKGNDMINMIK---LDFTPLTVECIHYLGDAIPTA 152 (261)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d--~~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 152 (261)
.+....-..+............++.++.. |+.+ +.+.+||+.+..-...-. .........++.+..+... +
T Consensus 478 ~~W~~~~~~p~~R~~h~~~~~~~~~iyv~---GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~-i 553 (695)
T 2zwa_A 478 REWSMIKSLSHTRFRHSACSLPDGNVLIL---GGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQ-G 553 (695)
T ss_dssp TEEEECCCCSBCCBSCEEEECTTSCEEEE---CCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTE-E
T ss_pred CcEEECCCCCCCcccceEEEEcCCEEEEE---CCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCE-E
Confidence 65443322222112122222113333333 1222 279999998875332211 1111112223444544232 3
Q ss_pred EEEecC-------CCeEEEEEccCCCcc-----ceeecc--CcccCeEEEEEcCCCCEEEEEcC--------CCeEEEee
Q psy6859 153 AVSDQD-------SSHVHIYDCKGNGTP-----LHVLDR--LHTKPVVLIKFNPIYQVVVSVDK--------AGILEYWS 210 (261)
Q Consensus 153 ~~~~~~-------d~~i~i~d~~~~~~~-----~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~--------dg~i~iwd 210 (261)
++.|+. ...+..||+. +..- ...+.. .....-.++....++++++.|+. ...+.+||
T Consensus 554 yv~GG~~~~~~~~~~~v~~yd~~-~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd 632 (695)
T 2zwa_A 554 IILGGGFMDQTTVSDKAIIFKYD-AENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLD 632 (695)
T ss_dssp EEECCBCTTSSCBCCEEEEEEEC-TTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEE
T ss_pred EEECCcCCCCCeeeCcEEEEEcc-CCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEE
Confidence 455543 2458899987 5441 112210 01111112233333677777763 34588899
Q ss_pred cccccc
Q psy6859 211 GYKQEF 216 (261)
Q Consensus 211 ~~~~~~ 216 (261)
+.++..
T Consensus 633 ~~t~~W 638 (695)
T 2zwa_A 633 PLSETL 638 (695)
T ss_dssp TTTTEE
T ss_pred CCCCeE
Confidence 876433
No 329
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.21 E-value=0.013 Score=44.26 Aligned_cols=114 Identities=8% Similarity=0.047 Sum_probs=68.4
Q ss_pred CCeEEEecCCCeEEEEeccCCceeeeEEeecc-ccceeEEEEe--e-CCCEEEEE-eCCCcEEEEEccccceeeeeeccC
Q psy6859 14 TDFVITASNDGHIKFWKKQEEGIEFVKHFRSH-LGVIHSICTN--Y-NGTLLCTV-ASDKAMKVFDVINFDMINMIKLDF 88 (261)
Q Consensus 14 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~-~~~v~~~~~~--~-~~~~l~s~-~~dg~v~~wd~~~~~~~~~~~~~~ 88 (261)
+..++.++.||.|.-.|.+++ +...+++.. ..++....-. + ++..++.. ..||.|..++..+|.....+..+.
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG--~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~ 87 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNG--HIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQ 87 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTT--EEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHH
T ss_pred CCEEEEEeCCCeEEEEECCCC--cEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccc
Confidence 357889999999999998887 666666543 1222221100 1 22333333 589999999988886555444321
Q ss_pred cce-eEEEEe-----------ecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeec
Q psy6859 89 TPL-TVECIH-----------YLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLD 133 (261)
Q Consensus 89 ~~~-~~~~~~-----------~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~ 133 (261)
... ..+... ..+..+ +.|+.++.+.-.|+++++.+..+...
T Consensus 88 lv~~SP~~~~~~pvv~~~~~~~~~g~V----y~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 88 LVSTSPLHLKTNIVVNDSGKIVEDEKV----YTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp HHTTCSEEEECC----------CCEEE----EECEEEEEEEEEETTTCCEEEEESTT
T ss_pred ceeccccccCCCceeecccccccCCEE----EEEecCCEEEEEECCCCcEEEEEecC
Confidence 100 001100 022233 33488999999999999998888654
No 330
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=95.89 E-value=0.46 Score=37.19 Aligned_cols=196 Identities=10% Similarity=0.082 Sum_probs=111.8
Q ss_pred EEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccc-cceeeeeecc
Q psy6859 10 VVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVIN-FDMINMIKLD 87 (261)
Q Consensus 10 ~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~-~~~~~~~~~~ 87 (261)
-.+| .+.+|.-. ..++.|+|+++. +.++.+.-. ..|.--.|-.+. .|+-.+ +..|+-|++.. ..+.+.+..+
T Consensus 72 IMnP~~~iiALra-g~~lQiFnle~K--~klks~~~~-e~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR~ 145 (494)
T 1bpo_A 72 IMNPASKVIALKA-GKTLQIFNIEMK--SKMKAHTMT-DDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRH 145 (494)
T ss_dssp EECSSSSCEEEEE-TTEEEEEETTTT--EEEEEEECS-SCCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred eeCCCCcEEEEec-CCeEEEEchHHh--hhhcceecC-CCceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhheecc
Confidence 3567 56666554 689999999987 666666533 456666776554 455544 35899999864 3455555532
Q ss_pred ----CcceeEEEEeecCCceeeeeeecC---CCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCce-EEEEec--
Q psy6859 88 ----FTPLTVECIHYLGDAIPTAAVSDQ---DSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPT-AAVSDQ-- 157 (261)
Q Consensus 88 ----~~~~~~~~~~~~~~~~~~~~~s~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-- 157 (261)
...+.....+++.++++.+.++.. -.|.+.+|..+.+. -+.++++ ......+....+.... ++.-+.
T Consensus 146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGh--aa~F~~~~~~g~~~~~~lf~fa~r~ 222 (494)
T 1bpo_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGH--AASFAQFKMEGNAEESTLFCFAVRG 222 (494)
T ss_dssp GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCS--EEEEEEEECTTCSSEEEEEEEEECS
T ss_pred hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheee--eeeeEEEecCCCCCCceEEEEEEec
Confidence 223333344556666666555422 24678899987653 3333332 1122222222111111 111111
Q ss_pred -CCCeEEEEEccCC--Ccc-c--eeec-----cCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccc
Q psy6859 158 -DSSHVHIYDCKGN--GTP-L--HVLD-----RLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQ 214 (261)
Q Consensus 158 -~d~~i~i~d~~~~--~~~-~--~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 214 (261)
..+.+++.++... +.+ . +..+ .....-..++..++....++.-+.-|.|.+||++++
T Consensus 223 ~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTg 290 (494)
T 1bpo_A 223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG 290 (494)
T ss_dssp TTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC
T ss_pred CCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccc
Confidence 2378999998522 111 1 1111 122455678889998888888889999999999653
No 331
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.85 E-value=0.77 Score=41.65 Aligned_cols=194 Identities=9% Similarity=0.056 Sum_probs=103.1
Q ss_pred EcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccc-cceeeeeecc-
Q psy6859 11 VTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVIN-FDMINMIKLD- 87 (261)
Q Consensus 11 ~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~-~~~~~~~~~~- 87 (261)
.+| .+.+|.-. ..++.|+++++. ..+..+.- +.+|.--.|-.+. .|+-.+ +..|.-|++.. ..+++.+..+
T Consensus 73 MnP~~~iiALra-g~~lQiFnl~~k--~klks~~~-~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~ 146 (1630)
T 1xi4_A 73 MNPASKVIALKA-GKTLQIFNIEMK--SKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHS 146 (1630)
T ss_pred cCCCcceEEEec-CCeEEEeehHHh--hhhccccc-CCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcch
Confidence 456 45555443 678999999876 45555443 3456656665443 444443 34799999963 2344444322
Q ss_pred ---CcceeEEEEeecCCceeeeeee---cCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEe--CCCCceEEEE---e
Q psy6859 88 ---FTPLTVECIHYLGDAIPTAAVS---DQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYL--GDAIPTAAVS---D 156 (261)
Q Consensus 88 ---~~~~~~~~~~~~~~~~~~~~~s---~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---~ 156 (261)
...+......++.++++.+.++ +.-.|.+.+|..+.+. .+.++++. .....+... +.... ++.- .
T Consensus 147 ~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha--~~F~~~~~~~~~~~~~-l~~f~~~~ 222 (1630)
T 1xi4_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHA--ASFAQFKMEGNAEEST-LFCFAVRG 222 (1630)
T ss_pred hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhH--hhhheeccCCCCCCce-EEEEEEec
Confidence 2333334445566676666554 2345888899887653 22222211 111111111 01000 1111 1
Q ss_pred cCCCeEEEEEccCC--Cccce------ee-c-cCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccc
Q psy6859 157 QDSSHVHIYDCKGN--GTPLH------VL-D-RLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQ 214 (261)
Q Consensus 157 ~~d~~i~i~d~~~~--~~~~~------~~-~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 214 (261)
...+.++|.++... +.+.. .+ + ........++..++....+..-+.-|.+.++|+.++
T Consensus 223 ~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~ 290 (1630)
T 1xi4_A 223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG 290 (1630)
T ss_pred CCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccc
Confidence 11368889888522 11111 11 1 012334567788888788888888999999999764
No 332
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.62 E-value=0.15 Score=38.82 Aligned_cols=108 Identities=16% Similarity=0.131 Sum_probs=59.1
Q ss_pred eEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCc-cceeec--cCcccCeEEEEEcCC---CCEEEEEcC----C----
Q psy6859 138 TVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGT-PLHVLD--RLHTKPVVLIKFNPI---YQVVVSVDK----A---- 203 (261)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~-~~~~~~--~~~~~~v~~~~~~~~---~~~l~~~~~----d---- 203 (261)
....+++.|++. ++++ ..++.|+++|. .++ .+..+. .........|+++|+ +..|+.+.. +
T Consensus 30 ~P~~ia~~pdG~--l~V~-e~~g~I~~~d~--~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 30 VPWSIAPLGGGR--YLVT-ERPGRLVLISP--SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR 104 (354)
T ss_dssp CEEEEEEEETTE--EEEE-ETTTEEEEECS--SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred CCeEEEEcCCCe--EEEE-eCCCEEEEEeC--CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence 457899999986 3444 44699999974 443 222221 022356889999998 444443332 3
Q ss_pred CeEEEeecccccccCCeeeeeecccccce-eecC-CCccceeeeeECCCCceEEEee
Q psy6859 204 GILEYWSGYKQEFKFPKCVHFESKLDTDL-FEFA-KNKTYPSGLSFSPDGNKFVTIS 258 (261)
Q Consensus 204 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~v~~~~~s~~~~~l~s~~ 258 (261)
..|..|+........ ...+.+ ..+. ........++|.|||.++++.+
T Consensus 105 ~~v~r~~~~~~~~~~--------~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKL--------KEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG 153 (354)
T ss_dssp EEEEEEEECSSSCCE--------EEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred eEEEEEEECCCCcCc--------CccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence 456667654321000 001111 1111 1112346899999998777654
No 333
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.61 E-value=0.51 Score=35.74 Aligned_cols=147 Identities=9% Similarity=-0.006 Sum_probs=76.5
Q ss_pred cceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeee--ee----ccCcceeEEEEeec---CCceeeeeeecCCCCeEE
Q psy6859 47 GVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINM--IK----LDFTPLTVECIHYL---GDAIPTAAVSDQDSSRVH 117 (261)
Q Consensus 47 ~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~--~~----~~~~~~~~~~~~~~---~~~~~~~~~s~~~d~~i~ 117 (261)
.....|+|.|||+++++--..|.|++++..+++.... +. ........+.++++ +..++.. ++...++.|.
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~-yt~~~~~~v~ 110 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAY-FTSASDNRIV 110 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEE-EECSSSEEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEE-EecCCCCEEE
Confidence 4568999999998777654489999998655543211 11 11222344566553 3334332 3333456666
Q ss_pred EEEcCCCc--------eeeEEe-ec-CCcceEEEEEEeCCCCceEEEEec-------------CCCeEEEEEccCCCc--
Q psy6859 118 IYDCKGND--------MINMIK-LD-FTPLTVECIHYLGDAIPTAAVSDQ-------------DSSHVHIYDCKGNGT-- 172 (261)
Q Consensus 118 i~d~~~~~--------~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~-------------~d~~i~i~d~~~~~~-- 172 (261)
-|.+.... ....+. .. ........+.|.|++. + +++-+ ..|.|.-++.. ++
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-L-yvt~Gd~~~~~~~qd~~~~~G~IlRi~~d--G~ip 186 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-L-YAGTGESGDTGLSQDRKSLGGKILRMTPD--GEPA 186 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-E-EEECBCTTCGGGTTCTTCSTTCEEEECTT--SSBC
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-E-EEEECCCCCCccccCCCCCCCEEEEEeCC--CCcc
Confidence 67665421 111111 11 1112345689999985 2 44422 13455555543 22
Q ss_pred ------cceeeccCcccCeEEEEEcCCCCEEEE
Q psy6859 173 ------PLHVLDRLHTKPVVLIKFNPIYQVVVS 199 (261)
Q Consensus 173 ------~~~~~~~~~~~~v~~~~~~~~~~~l~~ 199 (261)
....+..+|. ....++|+|+|++.++
T Consensus 187 ~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~ 218 (347)
T 3das_A 187 PGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFAS 218 (347)
T ss_dssp TTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEE
T ss_pred CCCCCCCCeEEeeCCC-CcceEEECCCCCEEEE
Confidence 1112221443 3467899998875554
No 334
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.60 E-value=0.097 Score=36.72 Aligned_cols=99 Identities=10% Similarity=-0.067 Sum_probs=58.1
Q ss_pred eEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccC--------eEEEEEcCCCCEEEEEcCCCeEEEe
Q psy6859 138 TVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKP--------VVLIKFNPIYQVVVSVDKAGILEYW 209 (261)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~l~~~~~dg~i~iw 209 (261)
.+..++|+|++. +.+. .+|.++-.+.. +.....=+ ..... -..+.|.|+|.+.++ .||.|.-+
T Consensus 42 ~~~~laf~P~G~--LYaV--~~G~Ly~~~~~-t~~~~~W~--~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~ 112 (236)
T 1tl2_A 42 NFKFLFLSPGGE--LYGV--LNDKIYKGTPP-THDNDNWM--GRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKA 112 (236)
T ss_dssp TCSEEEECTTSC--EEEE--ETTEEEEESCC-CSTTCCHH--HHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEE
T ss_pred cceeEEECCCcc--EEEE--eCCeEEEECCC-CCCccccc--ccccEecccccccceEEEECCCCCEEEe--CCCEEEEe
Confidence 456899999886 2333 57776666654 32211111 11222 377899999987777 56988877
Q ss_pred ecccccccCCeeeeeecccccceee----cCCCccceeeeeECCCCceEEEe
Q psy6859 210 SGYKQEFKFPKCVHFESKLDTDLFE----FAKNKTYPSGLSFSPDGNKFVTI 257 (261)
Q Consensus 210 d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~s~~~~~l~s~ 257 (261)
+..++ .....+.. -..--..+..|.|.|+|.+.+..
T Consensus 113 ~pP~~------------~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~ 152 (236)
T 1tl2_A 113 SPPQS------------DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH 152 (236)
T ss_dssp SCCCS------------TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred CCCcC------------CCCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence 75321 11111111 01112466899999999887766
No 335
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.43 E-value=0.11 Score=41.85 Aligned_cols=72 Identities=6% Similarity=-0.115 Sum_probs=52.5
Q ss_pred eEEEEEEeCCCCceEEEEecCCCeEEEEEccCCC------cc-------ceeeccCcccCeEEEEEcCCCCEEEEEcCCC
Q psy6859 138 TVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNG------TP-------LHVLDRLHTKPVVLIKFNPIYQVVVSVDKAG 204 (261)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~------~~-------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 204 (261)
....+..+||+.+ ++++|-.+.++.++|++ .. +. +.+. ...-.....+|.++|....+-.-|.
T Consensus 324 sPHGv~vsPDGky-i~v~GKLsptvtV~d~~-k~~~~~~~k~~~~~~~~~ae~--e~GlGPlHt~Fd~~G~aYTtlfidS 399 (638)
T 3sbq_A 324 NPHGCNTSSDGKY-FIAAGKLSPTCSMIAID-KLPDLFAGKLADPRDVIVGEP--ELGLGPLHTTFDGRGNAYTTLFIDS 399 (638)
T ss_dssp SCCCEEECTTSCE-EEEECTTSSBEEEEEGG-GHHHHHTTCCSCGGGGEEECC--BCCSCEEEEEECSSSEEEEEETTTT
T ss_pred CCcceeeCCCCCE-EEEcCCCCCeEEEEEee-hhhhhhhccccCcccceEeec--cCCCcccEEEECCCCceEeeeeecc
Confidence 4467889999997 47778889999999997 31 11 1122 2344567789999996556666899
Q ss_pred eEEEeeccc
Q psy6859 205 ILEYWSGYK 213 (261)
Q Consensus 205 ~i~iwd~~~ 213 (261)
.|.-|++..
T Consensus 400 qvvkWni~~ 408 (638)
T 3sbq_A 400 QVVKWNMEE 408 (638)
T ss_dssp EEEEEEHHH
T ss_pred eEEEEeccH
Confidence 999999864
No 336
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.25 E-value=0.63 Score=34.50 Aligned_cols=142 Identities=11% Similarity=0.025 Sum_probs=74.8
Q ss_pred EEEeeCCCEEEEEeCC--------------CcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEE
Q psy6859 52 ICTNYNGTLLCTVASD--------------KAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVH 117 (261)
Q Consensus 52 ~~~~~~~~~l~s~~~d--------------g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~ 117 (261)
--+++++.+|+-+... ..|+..++...+... +. ..+ ...+++.++.++....+......|.
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~--~~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy 132 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LD--PDP--CIYASLIGNYIYYLHYDTQTATSLY 132 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EE--CSC--EEEEEEETTEEEEEEESSSSCEEEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-ee--cCC--ccEEEEeCCEEEEEeecCCCCceEE
Confidence 3457888888877543 356666765544222 22 111 2256677887776521113455677
Q ss_pred EEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEE
Q psy6859 118 IYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVV 197 (261)
Q Consensus 118 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 197 (261)
..++...... .+.... . ..+++++..+ +.+......|...++. .+.....+. + ... ..+.|++.+|
T Consensus 133 ~~~~dGs~~~-~lt~~~--~----~~~~~~g~~i-y~t~~g~~~Iy~~~l~-g~~~~~l~~-~---~~~-~~~~P~g~~i 198 (302)
T 3s25_A 133 RIRIDGEEKK-KIKNHY--L----FTCNTSDRYF-YYNNPKNGQLYRYDTA-SQSEALFYD-C---NCY-KPVVLDDTNV 198 (302)
T ss_dssp EEETTSCCCE-EEESSC--C----CCSEEETTEE-EEECTTTCCEEEEETT-TTEEEEEEC-S---CEE-EEEEEETTEE
T ss_pred EEECCCCCeE-EEeCCC--c----eEeeEECCEE-EEEeCCCceEEEEECC-CCCEEEEeC-C---Ccc-ceeeecCCEE
Confidence 7777655433 332221 1 2345666653 4444446778888876 443332232 2 222 2356999888
Q ss_pred EEEcCC--CeEEEeecc
Q psy6859 198 VSVDKA--GILEYWSGY 212 (261)
Q Consensus 198 ~~~~~d--g~i~iwd~~ 212 (261)
+-...+ ..|..-++.
T Consensus 199 y~t~~~~~~~I~~~~ld 215 (302)
T 3s25_A 199 YYMDVNRDNAIVHVNIN 215 (302)
T ss_dssp EEEEGGGTTEEEEECSS
T ss_pred EEEEcCCCcEEEEEECC
Confidence 665433 345555553
No 337
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=94.87 E-value=0.39 Score=36.20 Aligned_cols=110 Identities=10% Similarity=0.053 Sum_probs=68.6
Q ss_pred EEEEEeCCCcEEEEEccccceeeeeeccC-cceeEEEEe-e---cCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecC
Q psy6859 60 LLCTVASDKAMKVFDVINFDMINMIKLDF-TPLTVECIH-Y---LGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDF 134 (261)
Q Consensus 60 ~l~s~~~dg~v~~wd~~~~~~~~~~~~~~-~~~~~~~~~-~---~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~ 134 (261)
.++.++.||.|.-+|..+|+.+.+++... .+. .... + .+..++.+ .++.||.|..++..++.....+....
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~--~~~~~~~~~~~~~~~vv--~p~~dG~l~a~~~~~G~~~~~~~~~~ 87 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPL--IEIQEPSRLETYETLII--EPFGDGNIYYFNAHQGLQKLPLSIRQ 87 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCS--EECCCSCTTTSSEEEEE--CCSTTTEEEEEETTTEEEEEEEEHHH
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCc--EEecCCccccCCcEEEE--EECCCCEEEEEECCCCcEEeeecccc
Confidence 78888999999999999999998887651 111 1111 0 01122221 22579999999998875444333211
Q ss_pred C--cceEEEEE----E------eCCCCceEEEEecCCCeEEEEEccCCCccceeec
Q psy6859 135 T--PLTVECIH----Y------LGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD 178 (261)
Q Consensus 135 ~--~~~~~~~~----~------~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~ 178 (261)
. ..++.. . . +.++ .+++|+.++++...|++ +++.+.++.
T Consensus 88 lv~~SP~~~-~~~pvv~~~~~~~~~g---~Vy~Gs~~g~l~ald~~-tG~~~W~~~ 138 (339)
T 2be1_A 88 LVSTSPLHL-KTNIVVNDSGKIVEDE---KVYTGSMRTIMYTINML-NGEIISAFG 138 (339)
T ss_dssp HHTTCSEEE-ECC----------CCE---EEEECEEEEEEEEEETT-TCCEEEEES
T ss_pred ceecccccc-CCCceeecccccccCC---EEEEEecCCEEEEEECC-CCcEEEEEe
Confidence 0 001110 0 0 0222 37888999999999999 999999886
No 338
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=94.16 E-value=1.4 Score=33.41 Aligned_cols=236 Identities=8% Similarity=-0.059 Sum_probs=114.6
Q ss_pred CeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEe----eccccceeEEEEeeC---CCEEEEE-e--CCCcEEEE
Q psy6859 5 PITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHF----RSHLGVIHSICTNYN---GTLLCTV-A--SDKAMKVF 73 (261)
Q Consensus 5 ~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~----~~~~~~v~~~~~~~~---~~~l~s~-~--~dg~v~~w 73 (261)
.-+.|+|.| +.++++--..|.|++++..++....+..+ .........|+++|+ +..|... + .++.|.-|
T Consensus 33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~ 112 (347)
T 3das_A 33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRM 112 (347)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEE
T ss_pred CceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEE
Confidence 456899999 77666655589999988655432333222 123456789999985 3344432 2 34455556
Q ss_pred Eccccc----------ee-eeee-ccCcceeEEEEeecCCceeeeeeec---------CCCCeEEEEEcCCCc-------
Q psy6859 74 DVINFD----------MI-NMIK-LDFTPLTVECIHYLGDAIPTAAVSD---------QDSSRVHIYDCKGND------- 125 (261)
Q Consensus 74 d~~~~~----------~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~---------~~d~~i~i~d~~~~~------- 125 (261)
....+. .+ ..+. ...+....+.+.+++...++..-.+ ...+.|.-.+....-
T Consensus 113 ~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~ 192 (347)
T 3das_A 113 LYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFP 192 (347)
T ss_dssp EBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSST
T ss_pred EeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCC
Confidence 554311 11 1111 1223344566667765444430000 113445444544320
Q ss_pred eeeEEeecCCcceEEEEEEeCCCCceEEEEe-cCCCeEEEEEccCCC------------------ccceeeccCcccCeE
Q psy6859 126 MINMIKLDFTPLTVECIHYLGDAIPTAAVSD-QDSSHVHIYDCKGNG------------------TPLHVLDRLHTKPVV 186 (261)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~------------------~~~~~~~~~~~~~v~ 186 (261)
....+.. ... ....++|+|++.. .++- +.++.=.|.-+. .+ .++..+. .+.....
T Consensus 193 ~~~i~a~-G~R-Np~Gla~dp~G~L--~~~d~g~~~~deln~i~-~G~nyGwP~~~g~~~~~~~~~P~~~~~-~~~~ap~ 266 (347)
T 3das_A 193 GSPVYSY-GHR-NVQGLAWDDKQRL--FASEFGQDTWDELNAIK-PGDNYGWPEAEGKGGGSGFHDPVAQWS-TDEASPS 266 (347)
T ss_dssp TCCEEEB-CCS-BCCEEEECTTCCE--EEEECCSSSCEEEEEEC-TTCBCCTTTCCSSCCCTTCCCCSEEEC-TTTCCEE
T ss_pred CCeEEee-CCC-CcceEEECCCCCE--EEEecCCCCCceeeEEc-CCCEecCCcccCCCCCccccCCcEecC-CCCCCCc
Confidence 0011111 111 3457888887652 2221 222222222222 11 1223332 1223556
Q ss_pred EEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEee
Q psy6859 187 LIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTIS 258 (261)
Q Consensus 187 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 258 (261)
.++|. ++..+...-..+.|....+.... ...+....+.+....+..|+..|||.++++..
T Consensus 267 G~~~~-~g~~~~~~l~~~~l~~v~~~~~~-----------~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 267 GIAYA-EGSVWMAGLRGERLWRIPLKGTA-----------AAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EEEEE-TTEEEEEESTTCSEEEEEEETTE-----------ESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred ceEEE-cCceeeccccCCEEEEEEecCCc-----------eecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 77776 45555555555556555554321 01122233344456899999999998776643
No 339
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.07 E-value=0.12 Score=45.99 Aligned_cols=39 Identities=23% Similarity=0.255 Sum_probs=32.6
Q ss_pred ceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeec
Q psy6859 48 VIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKL 86 (261)
Q Consensus 48 ~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~ 86 (261)
.+.+++..++..++++-+.|+++|+|++.+++++.+..+
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 355666677888999999999999999999998887654
No 340
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=93.99 E-value=1.8 Score=34.04 Aligned_cols=176 Identities=8% Similarity=0.044 Sum_probs=110.3
Q ss_pred CCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcceeEEEEeecCC
Q psy6859 22 NDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGD 101 (261)
Q Consensus 22 ~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (261)
.+.+|.|.|+.+......+.+. --+.-.+|..+.++.-. ..++.++|+++.+.++.+.....-....|++ .+
T Consensus 46 ~~~~vvIiDl~~~~~~~rrpi~-----AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis--~~ 117 (494)
T 1bpo_A 46 EQAQVVIIDMNDPSNPIRRPIS-----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS--LN 117 (494)
T ss_dssp TCCEEEEEETTSTTSCEEEECC-----CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEE--TT
T ss_pred CCCeEEEEECCCCCcceecccc-----cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecC--CC
Confidence 3447777787764322112222 13445678887777655 6789999999999999988776655555554 34
Q ss_pred ceeeeeeecCCCCeEEEEEcCCC-ceeeEEeecC--CcceEEEEEEeCCCCceEEEEec-----CCCeEEEEEccCCCcc
Q psy6859 102 AIPTAAVSDQDSSRVHIYDCKGN-DMINMIKLDF--TPLTVECIHYLGDAIPTAAVSDQ-----DSSHVHIYDCKGNGTP 173 (261)
Q Consensus 102 ~~~~~~~s~~~d~~i~i~d~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-----~d~~i~i~d~~~~~~~ 173 (261)
.+..+ .+..|.-|++... .+.+.+..+. ....|.....+++.++.+++.-+ -.|.+.+|..+ .+.
T Consensus 118 ~l~lV-----T~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e--r~~ 190 (494)
T 1bpo_A 118 TVALV-----TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD--RKV 190 (494)
T ss_dssp EEEEE-----CSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEEST--TCC
T ss_pred eEEEE-----cCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecc--ccc
Confidence 44444 6889999999753 4566665432 34578888889999986543221 24778899985 345
Q ss_pred ceeeccCcccCeEEEEEcCCC---CEEEEEcC---CCeEEEeeccc
Q psy6859 174 LHVLDRLHTKPVVLIKFNPIY---QVVVSVDK---AGILEYWSGYK 213 (261)
Q Consensus 174 ~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~---dg~i~iwd~~~ 213 (261)
-+.++ +|-+.-..+.+.-+. ++++.+.. .+.++|-++..
T Consensus 191 sQ~ie-Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~ 235 (494)
T 1bpo_A 191 SQPIE-GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGT 235 (494)
T ss_dssp EEEEC-CSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSC
T ss_pred cchhe-eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCC
Confidence 56666 777655554443221 13333332 27888888853
No 341
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=93.81 E-value=1.2 Score=31.38 Aligned_cols=179 Identities=6% Similarity=-0.069 Sum_probs=88.5
Q ss_pred CCeEEEecCCCeEEEEeccCCc---e-eeeEEeecc--ccceeEEEEeeCCCEEEEEeCCCcEEEEEcccccee------
Q psy6859 14 TDFVITASNDGHIKFWKKQEEG---I-EFVKHFRSH--LGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMI------ 81 (261)
Q Consensus 14 ~~~l~s~~~d~~i~iw~~~~~~---~-~~~~~~~~~--~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~------ 81 (261)
+.+|+...+| +++.=...... . .....+ +. =..+..++|+|++.+.+. .+|.+.-.+..+.+..
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~i-G~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~ 79 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLI-GKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRA 79 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEE-ESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhcccc-CccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccc
Confidence 4466677777 65543333221 0 011111 22 246789999999976655 7777666665442111
Q ss_pred eeee-ccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceee-----EEeecCCcceEEEEEEeCCCCceEEEE
Q psy6859 82 NMIK-LDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMIN-----MIKLDFTPLTVECIHYLGDAIPTAAVS 155 (261)
Q Consensus 82 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (261)
..+- ..-.....+.+.+++...++ .||.|.-++..+..... .......-..+..+.+.|++. +.+
T Consensus 80 t~IG~~Gw~~F~a~~fD~~G~LYav------~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~---Lya 150 (236)
T 1tl2_A 80 KKIGNGGWNQFQFLFFDPNGYLYAV------SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY---LYA 150 (236)
T ss_dssp EEEECSCGGGCSEEEECTTSCEEEE------ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC---EEE
T ss_pred cEecccccccceEEEECCCCCEEEe------CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCce---EEE
Confidence 1110 01111244555555543322 46888888764322111 111111123568999999996 444
Q ss_pred ecCCCeEEEEEccCCCcc------ceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeec
Q psy6859 156 DQDSSHVHIYDCKGNGTP------LHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSG 211 (261)
Q Consensus 156 ~~~d~~i~i~d~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 211 (261)
.. |+.++-.... .... ...+-...-..-+-+.|.|++.+.++. ++ ++|..
T Consensus 151 v~-dg~lyr~~~P-~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g--~~Y~~ 206 (236)
T 1tl2_A 151 VH-GQQFYKALPP-VSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GG--KFYED 206 (236)
T ss_dssp EE-TTEEEEECCC-SSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TT--EEEEE
T ss_pred Ee-CCcEEecCCC-CCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CC--eEEec
Confidence 44 7775432222 1110 111100222334557799999877666 66 44543
No 342
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=93.74 E-value=1.5 Score=32.44 Aligned_cols=161 Identities=9% Similarity=0.010 Sum_probs=83.7
Q ss_pred CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEe--CCCc--EEEEEccccceeeeeeccCcceeEEEEeec
Q psy6859 24 GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVA--SDKA--MKVFDVINFDMINMIKLDFTPLTVECIHYL 99 (261)
Q Consensus 24 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~--~dg~--v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (261)
..|+..+++....+. +.. . .+..|++++++|+-.. .++. |...++. +.....+..... ..+.+.
T Consensus 88 ~~Iy~i~~dg~~~~~---l~~--~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~d-Gs~~~~lt~~~~----~~~~~~ 155 (302)
T 3s25_A 88 NSLCRIKRNGHGSTV---LDP--D--PCIYASLIGNYIYYLHYDTQTATSLYRIRID-GEEKKKIKNHYL----FTCNTS 155 (302)
T ss_dssp EEEEEEETTSCCCEE---EEC--S--CEEEEEEETTEEEEEEESSSSCEEEEEEETT-SCCCEEEESSCC----CCSEEE
T ss_pred CeEEEEeCCCCcceE---eec--C--CccEEEEeCCEEEEEeecCCCCceEEEEECC-CCCeEEEeCCCc----eEeeEE
Confidence 456666666542222 221 1 2236788888888765 3444 4444553 333333332211 234667
Q ss_pred CCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeecc
Q psy6859 100 GDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDR 179 (261)
Q Consensus 100 ~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~ 179 (261)
++.+... ......|...++..+.....+. .+. ...+.|++.+++.........|..-++. +.....+.
T Consensus 156 g~~iy~t---~~g~~~Iy~~~l~g~~~~~l~~---~~~---~~~~~P~g~~iy~t~~~~~~~I~~~~ld--G~~~~~Lt- 223 (302)
T 3s25_A 156 DRYFYYN---NPKNGQLYRYDTASQSEALFYD---CNC---YKPVVLDDTNVYYMDVNRDNAIVHVNIN--NPNPVVLT- 223 (302)
T ss_dssp TTEEEEE---CTTTCCEEEEETTTTEEEEEEC---SCE---EEEEEEETTEEEEEEGGGTTEEEEECSS--SCCCEECS-
T ss_pred CCEEEEE---eCCCceEEEEECCCCCEEEEeC---CCc---cceeeecCCEEEEEEcCCCcEEEEEECC--CCCeEEEe-
Confidence 7776654 2346788888888775443332 111 1234577776434333323456666664 44444553
Q ss_pred CcccCeEEEEEcCCCCEEEEEc--CCCeEEEeecc
Q psy6859 180 LHTKPVVLIKFNPIYQVVVSVD--KAGILEYWSGY 212 (261)
Q Consensus 180 ~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~ 212 (261)
. ..+ ..|+|++++|+-+. ..+.|..-++.
T Consensus 224 ~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~D 254 (302)
T 3s25_A 224 E--ANI--EHYNVYGSLIFYQRGGDNPALCVVKND 254 (302)
T ss_dssp C--SCE--EEEEEETTEEEEEECSSSCEEEEEETT
T ss_pred C--CCc--ceEEECCCEEEEEECCCCcEEEEEECC
Confidence 2 223 34788888886542 33555555554
No 343
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=93.37 E-value=3.2 Score=35.09 Aligned_cols=189 Identities=10% Similarity=0.100 Sum_probs=100.9
Q ss_pred CCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeee
Q psy6859 4 SPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINM 83 (261)
Q Consensus 4 ~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~ 83 (261)
..|.++...+...|..|+.+| +..+|..+. +...........|.++.. .++ .|..++.+ -+..+|..+++....
T Consensus 63 ~~i~~i~~d~~g~lWigT~~G-l~~yd~~~~--~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~ 136 (758)
T 3ott_A 63 TRIYCGVIIDNTYLYMGTDNG-ILVYNYRAD--RYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSF 136 (758)
T ss_dssp SCEEEEEEETTTEEEEEETTE-EEEEETTTT--EECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEE
T ss_pred ceEEEEEEcCCCcEEEEeCCC-eEEEeCCCC--EEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEe
Confidence 458888776645666677655 678888765 222211112234666654 455 45556655 578888766543321
Q ss_pred ee----ccCcceeEEEEeec-CCceeeeeeecCCCCeEEEEEcCCCceeeEEeecC----CcceEEEEEEeCCCCceEEE
Q psy6859 84 IK----LDFTPLTVECIHYL-GDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDF----TPLTVECIHYLGDAIPTAAV 154 (261)
Q Consensus 84 ~~----~~~~~~~~~~~~~~-~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 154 (261)
.. ..... +..+..+ ...+... +. +-+..+|..+++.. .+.... ....+.++...+++.. +.
T Consensus 137 ~~~~~~l~~~~--i~~i~~d~~g~lWig----t~-~Gl~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~~~~--lW 206 (758)
T 3ott_A 137 DTRRNGLPNNT--IYSIIRTKDNQIYVG----TY-NGLCRYIPSNGKFE-GIPLPVHSSQSNLFVNSLLEDTTRQC--VW 206 (758)
T ss_dssp CHHHHCCSCSC--EEEEEECTTCCEEEE----ET-TEEEEEETTTTEEE-EECCCCCTTCSSCCEEEEEEETTTTE--EE
T ss_pred ccCCCCcCCCe--EEEEEEcCCCCEEEE----eC-CCHhhCccCCCceE-EecCCCccccccceeEEEEEECCCCE--EE
Confidence 01 11122 2233332 3344443 33 45778887766432 222111 1224778877776543 23
Q ss_pred EecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859 155 SDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK 213 (261)
Q Consensus 155 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 213 (261)
.|+ ++-+..+|.. +++. ..+.......|.++...++|.+.+. +.+| +.+++..+
T Consensus 207 igt-~~Gl~~~~~~-~~~~-~~~~~l~~~~i~~i~~d~~g~lWig-T~~G-l~~~~~~~ 260 (758)
T 3ott_A 207 IGT-EGYLFQYFPS-TGQI-KQTEAFHNNSIKSLALDGNGDLLAG-TDNG-LYVYHNDT 260 (758)
T ss_dssp EEE-EEEEEEEETT-TTEE-EEEEEEEEEEEEEEEECTTCCEEEE-ETTE-EEEECCTT
T ss_pred EEE-CCCCeEEcCC-CCeE-EeccCCCCCeEEEEEEcCCCCEEEE-eCCc-eeEEecCC
Confidence 333 3458888876 4432 2222123456888888888875544 3444 78888754
No 344
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=93.31 E-value=2 Score=32.38 Aligned_cols=200 Identities=15% Similarity=0.144 Sum_probs=112.0
Q ss_pred CCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccc----cceeEEEEeeCCCEEEEEeC-------CCcEEE
Q psy6859 4 SPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHL----GVIHSICTNYNGTLLCTVAS-------DKAMKV 72 (261)
Q Consensus 4 ~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~s~~~-------dg~v~~ 72 (261)
++|.--.|-..+.|+-.+ +..|.-|+++.. ..+.+.+.-|. ..|..-..+++.++++..+- .|.+.+
T Consensus 107 e~VvfWkWis~~~L~lVT-~taVyHWs~~~~-s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQL 184 (365)
T 2xzh_A 107 DDVTFWKWISLNTVALVT-DNAVYHWSMEGE-SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQL 184 (365)
T ss_dssp SCEEEEEECSSSEEEEEE-SSEEEEEESSTT-CCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEE
T ss_pred CccEEEEecCCCeEEEEc-CCcEEEEcccCC-CCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEE
Confidence 344444555544555444 368899998762 26666666553 35667777888888776542 256788
Q ss_pred EEccccceeeeeeccCcceeEEEEeecCC----ceeeeeeecCCCCeEEEEEcCCC---ce---eeEEeecCC----cce
Q psy6859 73 FDVINFDMINMIKLDFTPLTVECIHYLGD----AIPTAAVSDQDSSRVHIYDCKGN---DM---INMIKLDFT----PLT 138 (261)
Q Consensus 73 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~s~~~d~~i~i~d~~~~---~~---~~~~~~~~~----~~~ 138 (261)
|..+.+ .-+.++ .+...-..+..+++ .+++.+.-....+.+++.++... .+ .+....... ..-
T Consensus 185 YS~er~-~sQ~ie--Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DF 261 (365)
T 2xzh_A 185 YSVDRK-VSQPIE--GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDF 261 (365)
T ss_dssp EETTTT-EEEEEC--CSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCC
T ss_pred Eeeccc-ccceee--eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCc
Confidence 887543 222222 22222222222222 22222222233468899988432 11 112222221 234
Q ss_pred EEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecc
Q psy6859 139 VECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGY 212 (261)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 212 (261)
..++..++.....+++ +.-|.+++||+. ++.++..-+ -...+|-.-+-+....-++.....|.|.--.++
T Consensus 262 PVamqvs~kygviyvi--TK~G~ihlyDle-Tgt~i~~nr-IS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~ 331 (365)
T 2xzh_A 262 PVAMQISEKHDVVFLI--TKYGYIHLYDLE-TGTCIYMNR-ISGETIFVTAPHEATAGIIGVNRKGQVLSVCVE 331 (365)
T ss_dssp EEEEEEETTTTEEEEE--ETTSEEEEEETT-TCCEEEEEE-CCSSCEEEEEEEGGGTEEEEEETTCEEEEEEEC
T ss_pred eEEEEecccCCEEEEE--eCCcEEEEEEcc-cCcEEEEec-cCCCceEEecccCCCCcEEEEcCCCEEEEEEEC
Confidence 5677777776643344 467999999999 998887765 556666555554444445555577877666554
No 345
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=92.80 E-value=5.8 Score=36.41 Aligned_cols=201 Identities=14% Similarity=0.113 Sum_probs=100.2
Q ss_pred CCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeecc----ccceeEEEEeeCCCEEEEEe-------CCCcEEE
Q psy6859 4 SPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSH----LGVIHSICTNYNGTLLCTVA-------SDKAMKV 72 (261)
Q Consensus 4 ~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~s~~-------~dg~v~~ 72 (261)
.+|.--.|-..+.|+-.+ +..|.-|++.+ ...+.+.+.-| ...|..-..+++.++++..+ -.|.+.+
T Consensus 106 e~VvfWkWis~~~l~lVT-~~aVyHW~~~~-~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQL 183 (1630)
T 1xi4_A 106 DDVTFWKWISLNTVALVT-DNAVYHWSMEG-ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQL 183 (1630)
T ss_pred CCceEEEecCCCeeEEEc-CCeEEEeccCC-CCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeee
Confidence 345444555544454444 36889999965 22555555444 34577777788888877554 2477888
Q ss_pred EEccccceeeeeeccCcceeEEEEe--ecCCceeeeeeecCCCCeEEEEEcCCC---ce---eeEEeecCCc----ceEE
Q psy6859 73 FDVINFDMINMIKLDFTPLTVECIH--YLGDAIPTAAVSDQDSSRVHIYDCKGN---DM---INMIKLDFTP----LTVE 140 (261)
Q Consensus 73 wd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~d~~i~i~d~~~~---~~---~~~~~~~~~~----~~~~ 140 (261)
|..+.+. -+.+..+........+. +....+++.+......+.++|.++... .+ .+.......| .-..
T Consensus 184 yS~er~~-sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv 262 (1630)
T 1xi4_A 184 YSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV 262 (1630)
T ss_pred eeccccc-chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcce
Confidence 8876432 11111111100000000 011122222222223468888887542 11 1111111111 2334
Q ss_pred EEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeec
Q psy6859 141 CIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSG 211 (261)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 211 (261)
++..++.... +..-+.-|.+++||+. ++.++..-+ -...+|-..+-++...-++.....|.|.--.+
T Consensus 263 ~~~vs~k~g~--iy~itk~G~~~~~d~~-t~~~i~~~r-is~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v 329 (1630)
T 1xi4_A 263 AMQISEKHDV--VFLITKYGYIHLYDLE-TGTCIYMNR-ISGETIFVTAPHEATAGIIGVNRKGQVLSVCV 329 (1630)
T ss_pred EEEeccccCE--EEEEecCceEEEEecc-cchhhhhcc-ccCCceEEeccCCCCCceEEEcCCceEEEEEE
Confidence 5666666543 3334567999999999 888776554 34444443333332222333335555544443
No 346
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=92.74 E-value=0.58 Score=39.03 Aligned_cols=73 Identities=10% Similarity=0.159 Sum_probs=45.8
Q ss_pred eeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCccee-EEEEee---cC------CceeeeeeecCCCCeEEE
Q psy6859 49 IHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLT-VECIHY---LG------DAIPTAAVSDQDSSRVHI 118 (261)
Q Consensus 49 v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~-~~~~~~---~~------~~~~~~~~s~~~d~~i~i 118 (261)
|.++. .+..++++-+.|.++|+|++.+++++........+.. ..++.+ .+ +.++ +.+++..+|..++
T Consensus 224 Is~~~--~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL~~~~~~~~s~L~~~~~~~~~Lrl~~~~l-v~y~P~~~G~Fk~ 300 (729)
T 3f7f_A 224 ISCKL--FHERYLIVLTQNCHLKIWDLTSFTLIQDYDMVSQSDSDPSHFRKVEAVGEYLSLYNNTL-VTLLPLENGLFQM 300 (729)
T ss_dssp EEEEE--ETTTEEEEEETTCEEEEEETTTTEEEEEEETTTTSCCCSSCCCCCCSCCCCEEESSSEE-EEEETTTTCEEEE
T ss_pred EEEec--cCCcEEEEEEcCCeEEEEEcCCCceEEeeccccCccccccccCcccCcchhHhheeeEE-EEEecCCCCeEEE
Confidence 44443 3567999999999999999999998887776322100 001211 11 1222 2366677889999
Q ss_pred EEcCCC
Q psy6859 119 YDCKGN 124 (261)
Q Consensus 119 ~d~~~~ 124 (261)
|.+...
T Consensus 301 ~~l~~~ 306 (729)
T 3f7f_A 301 GTLLVD 306 (729)
T ss_dssp EEEEC-
T ss_pred EEEEEc
Confidence 988643
No 347
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=92.48 E-value=3.2 Score=32.75 Aligned_cols=104 Identities=7% Similarity=-0.016 Sum_probs=53.6
Q ss_pred eEEEEeecCCceeeeeeecCCC-CeEEEEEcCCCceeeEEeecC------CcceEEEEEEeCC---CCceEEEEecC---
Q psy6859 92 TVECIHYLGDAIPTAAVSDQDS-SRVHIYDCKGNDMINMIKLDF------TPLTVECIHYLGD---AIPTAAVSDQD--- 158 (261)
Q Consensus 92 ~~~~~~~~~~~~~~~~~s~~~d-~~i~i~d~~~~~~~~~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~~~--- 158 (261)
..+.+.++++.+++ ... +.|.+++..++.......... .......++++|+ ... ++++-+.
T Consensus 30 ~~~a~~pdG~l~V~-----e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~-lYv~~s~~~~ 103 (454)
T 1cru_A 30 HALLWGPDNQIWLT-----ERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPY-IYISGTFKNP 103 (454)
T ss_dssp EEEEECTTSCEEEE-----ETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCE-EEEEEEEECT
T ss_pred eEEEEcCCCcEEEE-----EcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCE-EEEEEecccc
Confidence 45566677764443 344 468888765554322222211 2335678999996 333 2333321
Q ss_pred ---------CCeEEEEEccCCC------ccc-eeeccCcccCeEEEEEcCCCCEEEEEc
Q psy6859 159 ---------SSHVHIYDCKGNG------TPL-HVLDRLHTKPVVLIKFNPIYQVVVSVD 201 (261)
Q Consensus 159 ---------d~~i~i~d~~~~~------~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~ 201 (261)
...|.-|+..... +.+ ..+..........|+|.|||.+.++.+
T Consensus 104 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 104 KSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp TC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 2356666654111 111 122211223478899999998665544
No 348
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=91.30 E-value=5.9 Score=33.28 Aligned_cols=155 Identities=8% Similarity=0.024 Sum_probs=72.5
Q ss_pred eCCCEEEEEeCC----CcEEEEEccccceeeee-e-----ccCcceeEEEEeec-CCceeee-eeecC--CCCeEEEEEc
Q psy6859 56 YNGTLLCTVASD----KAMKVFDVINFDMINMI-K-----LDFTPLTVECIHYL-GDAIPTA-AVSDQ--DSSRVHIYDC 121 (261)
Q Consensus 56 ~~~~~l~s~~~d----g~v~~wd~~~~~~~~~~-~-----~~~~~~~~~~~~~~-~~~~~~~-~~s~~--~d~~i~i~d~ 121 (261)
.++..++.|+.+ ..+.+||..+++....- . .+............ ++.++.. ...+. .-..+.+||+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 566777777753 46888998877644332 1 11111112222221 3333332 11110 1246889998
Q ss_pred CCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCC--eEEEEEccCCCc--ccee---eccCcccCeEEEEEcCC-
Q psy6859 122 KGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS--HVHIYDCKGNGT--PLHV---LDRLHTKPVVLIKFNPI- 193 (261)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~i~i~d~~~~~~--~~~~---~~~~~~~~v~~~~~~~~- 193 (261)
.+.+-...-.... +..-.+.....++. +++.|+.++ .+.+||.. +.. .+.. +. ........+.+..+
T Consensus 476 ~t~~W~~~~~~p~-~R~~h~~~~~~~~~--iyv~GG~~~~~~v~~yd~~-t~~W~~~~~~g~~p-~~r~~~~a~v~~~~~ 550 (695)
T 2zwa_A 476 KTREWSMIKSLSH-TRFRHSACSLPDGN--VLILGGVTEGPAMLLYNVT-EEIFKDVTPKDEFF-QNSLVSAGLEFDPVS 550 (695)
T ss_dssp TTTEEEECCCCSB-CCBSCEEEECTTSC--EEEECCBCSSCSEEEEETT-TTEEEECCCSSGGG-GSCCBSCEEEEETTT
T ss_pred CCCcEEECCCCCC-CcccceEEEEcCCE--EEEECCCCCCCCEEEEECC-CCceEEccCCCCCC-CcccceeEEEEeCCC
Confidence 8764332211111 11112233322443 255554433 68899987 432 1111 11 11112233555555
Q ss_pred CCEEEEEcC--C-----CeEEEeeccccc
Q psy6859 194 YQVVVSVDK--A-----GILEYWSGYKQE 215 (261)
Q Consensus 194 ~~~l~~~~~--d-----g~i~iwd~~~~~ 215 (261)
+++++.|+. + ..+.+||+.++.
T Consensus 551 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 551 KQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp TEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 666677764 2 358888886643
No 349
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=89.70 E-value=2.7 Score=34.21 Aligned_cols=86 Identities=13% Similarity=0.156 Sum_probs=55.8
Q ss_pred cceeEEEEeeCCCEEEEEeC-CCcEEEEEccccce-------------eeeeeccCcceeEEEEeecCCceeeeeeecCC
Q psy6859 47 GVIHSICTNYNGTLLCTVAS-DKAMKVFDVINFDM-------------INMIKLDFTPLTVECIHYLGDAIPTAAVSDQD 112 (261)
Q Consensus 47 ~~v~~~~~~~~~~~l~s~~~-dg~v~~wd~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 112 (261)
.....+.++|||++++.++. +.++.++|+..... ..+.+....| ....+.++|....++ --
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGP-lHt~Fd~~G~aYTtl----fi 397 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGP-LHTTFDGRGNAYTTL----FI 397 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCE-EEEEECSSSEEEEEE----TT
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcc-cEEEECCCCceEeee----ee
Confidence 44578899999999988774 78999999874211 2233333333 345566666333333 57
Q ss_pred CCeEEEEEcCCC----------ceeeEEeecCCcc
Q psy6859 113 SSRVHIYDCKGN----------DMINMIKLDFTPL 137 (261)
Q Consensus 113 d~~i~i~d~~~~----------~~~~~~~~~~~~~ 137 (261)
|..|.-|++... ..+..+..+.++.
T Consensus 398 dSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpG 432 (638)
T 3sbq_A 398 DSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPG 432 (638)
T ss_dssp TTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEE
T ss_pred cceEEEEeccHHHHHhcCccCCeeeeccccccCCc
Confidence 999999998743 4566666665554
No 350
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=89.25 E-value=5.8 Score=30.02 Aligned_cols=28 Identities=0% Similarity=-0.057 Sum_probs=21.7
Q ss_pred ceeEEEEeeCCCEEEEEeCCCcEEEEEc
Q psy6859 48 VIHSICTNYNGTLLCTVASDKAMKVFDV 75 (261)
Q Consensus 48 ~v~~~~~~~~~~~l~s~~~dg~v~~wd~ 75 (261)
....|+|.|+++.|+.+...|.|++++.
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~ 46 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQA 46 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEET
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeC
Confidence 4589999999983444567899999985
No 351
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=88.34 E-value=8.2 Score=30.59 Aligned_cols=54 Identities=15% Similarity=0.166 Sum_probs=33.0
Q ss_pred eEEEEEEeCCCC-ceEEEEecCCCeEEEEEccCC--Cccceeec----c----CcccCeEEEEEcCC
Q psy6859 138 TVECIHYLGDAI-PTAAVSDQDSSHVHIYDCKGN--GTPLHVLD----R----LHTKPVVLIKFNPI 193 (261)
Q Consensus 138 ~~~~~~~~~~~~-~~~~~~~~~d~~i~i~d~~~~--~~~~~~~~----~----~~~~~v~~~~~~~~ 193 (261)
....|+|.|++. . ++++ ...|.|++++.... ..++..+. . ..+.....|+|+|+
T Consensus 15 ~P~~~a~~pdG~~r-l~V~-er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 15 QPVGALHSGDGSQR-LFIL-EKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SEEEEECCSSSSCC-EEEE-ETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CceEEEECCCCCeE-EEEE-eCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 347899999985 3 2444 46899999975411 11222221 0 11456889999997
No 352
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=83.49 E-value=5.1 Score=32.85 Aligned_cols=58 Identities=14% Similarity=0.024 Sum_probs=36.1
Q ss_pred eEEEEEcCCCCEEEEEcCC------------CeEEEeecccccccCCeeeeeecccccceeecCC-CccceeeeeECCCC
Q psy6859 185 VVLIKFNPIYQVVVSVDKA------------GILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK-NKTYPSGLSFSPDG 251 (261)
Q Consensus 185 v~~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~ 251 (261)
.--|+|+|.|++++.-..+ ..+.+.+. .+++..+-+.+ ....++.++|+||+
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~---------------~~g~~~rf~~~P~gaE~TG~~fspDg 542 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADP---------------ATGEIRRFMVGPIGCEVTGISFSPDQ 542 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECT---------------TTCCEEEEEECCTTCEEEEEEECTTS
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeC---------------CCCeEEEEEeCCCCccCcCeeECCCC
Confidence 4568999999966654432 12233332 23343333333 35689999999999
Q ss_pred ceEEEe
Q psy6859 252 NKFVTI 257 (261)
Q Consensus 252 ~~l~s~ 257 (261)
+.|...
T Consensus 543 ~tlfvn 548 (592)
T 3zwu_A 543 KTLFVG 548 (592)
T ss_dssp SEEEEE
T ss_pred CEEEEE
Confidence 988765
No 353
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=82.56 E-value=16 Score=28.80 Aligned_cols=61 Identities=7% Similarity=0.025 Sum_probs=36.5
Q ss_pred CeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeec------cccceeEEEEeeC---CCEEEEEe
Q psy6859 5 PITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRS------HLGVIHSICTNYN---GTLLCTVA 65 (261)
Q Consensus 5 ~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~------~~~~v~~~~~~~~---~~~l~s~~ 65 (261)
.-+.|+|.| ++++++-...+.|++++..++....+..+.. .......|+|+|+ +..|..+.
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~ 98 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG 98 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence 456899999 7766654444578888765443233333321 2345679999995 44554443
No 354
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=81.76 E-value=7.6 Score=32.63 Aligned_cols=34 Identities=12% Similarity=0.267 Sum_probs=27.4
Q ss_pred EEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEee
Q psy6859 95 CIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKL 132 (261)
Q Consensus 95 ~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~ 132 (261)
++..+...++++ +.|.++++|++++++++.....
T Consensus 226 ~~~~~~~fLftL----~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 226 CKLFHERYLIVL----TQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEETTTEEEEE----ETTCEEEEEETTTTEEEEEEET
T ss_pred EeccCCcEEEEE----EcCCeEEEEEcCCCceEEeecc
Confidence 334556677777 8999999999999998888766
No 355
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=81.24 E-value=11 Score=30.89 Aligned_cols=61 Identities=13% Similarity=0.019 Sum_probs=37.2
Q ss_pred cCeEEEEEcCCCCEEEEEcCC------------CeEEEeecccccccCCeeeeeecccccceeecCC-CccceeeeeECC
Q psy6859 183 KPVVLIKFNPIYQVVVSVDKA------------GILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK-NKTYPSGLSFSP 249 (261)
Q Consensus 183 ~~v~~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~ 249 (261)
.....|.|+++|.+.+..... ..+..++. .+++....+.+ ....++.++|+|
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp---------------~tGel~~fl~~P~~aEpnGiafSP 540 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADP---------------ATGEIRRFMVGPIGCEVTGISFSP 540 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECT---------------TTCCEEEEEECCTTCEEEEEEECT
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeC---------------CCCeEEEEEeCCCCccccCCEECC
Confidence 345778999999866633211 13333433 23443333333 245789999999
Q ss_pred CCceEEEee
Q psy6859 250 DGNKFVTIS 258 (261)
Q Consensus 250 ~~~~l~s~~ 258 (261)
|++.|.++-
T Consensus 541 D~ktLfV~v 549 (592)
T 4a9v_A 541 DQKTLFVGI 549 (592)
T ss_dssp TSSEEEEEE
T ss_pred CCCEEEEEE
Confidence 999988753
No 356
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=79.73 E-value=18 Score=27.60 Aligned_cols=67 Identities=12% Similarity=-0.014 Sum_probs=32.9
Q ss_pred CeEEEEEcC---CCeEEEecCCCeEEEEeccCCceeeeEEeec----------------cccceeEEEEeeC-CCEEEEE
Q psy6859 5 PITHVVVTK---TDFVITASNDGHIKFWKKQEEGIEFVKHFRS----------------HLGVIHSICTNYN-GTLLCTV 64 (261)
Q Consensus 5 ~v~~~~~~~---~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~----------------~~~~v~~~~~~~~-~~~l~s~ 64 (261)
.|.+|++.| .+.+..+...+.|...+-.....+.+..+.. ....+.+|.+.|. ...++.+
T Consensus 116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg 195 (394)
T 3b7f_A 116 HVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIG 195 (394)
T ss_dssp EEEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEE
T ss_pred ceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEE
Confidence 577888885 2455555555554433222222222211110 1235788988873 3445555
Q ss_pred eCCCcEE
Q psy6859 65 ASDKAMK 71 (261)
Q Consensus 65 ~~dg~v~ 71 (261)
..++.|.
T Consensus 196 ~~~ggl~ 202 (394)
T 3b7f_A 196 MSSGGVF 202 (394)
T ss_dssp EETBEEE
T ss_pred ECCCCEE
Confidence 4444443
No 357
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=74.88 E-value=19 Score=28.90 Aligned_cols=70 Identities=11% Similarity=0.007 Sum_probs=44.7
Q ss_pred EEEEEEe----CCCCceEEEEecCCCeEEEEEccCCC-------ccceeecc-CcccCeEEEEEcCCCCEEEEEcCCCeE
Q psy6859 139 VECIHYL----GDAIPTAAVSDQDSSHVHIYDCKGNG-------TPLHVLDR-LHTKPVVLIKFNPIYQVVVSVDKAGIL 206 (261)
Q Consensus 139 ~~~~~~~----~~~~~~~~~~~~~d~~i~i~d~~~~~-------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i 206 (261)
.+.++.. .++.+.++..|+.+|.|.=.-+.... ..+.++.. ....+|..|.++++.++|+.++.++.+
T Consensus 406 lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~ 485 (495)
T 1q47_A 406 FTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVA 485 (495)
T ss_dssp EEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEE
T ss_pred eEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEE
Confidence 4555444 23567788889999987543332121 13334431 245789999999999999999988765
Q ss_pred EE
Q psy6859 207 EY 208 (261)
Q Consensus 207 ~i 208 (261)
+|
T Consensus 486 ~v 487 (495)
T 1q47_A 486 QL 487 (495)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 358
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=73.70 E-value=23 Score=29.00 Aligned_cols=60 Identities=13% Similarity=0.077 Sum_probs=37.1
Q ss_pred eEEEEEEeCCCCceEEE-EecC-----------CCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEE
Q psy6859 138 TVECIHYLGDAIPTAAV-SDQD-----------SSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSV 200 (261)
Q Consensus 138 ~~~~~~~~~~~~~~~~~-~~~~-----------d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 200 (261)
....+.|.+++. +.+ +-.. .+.+..++.. ++++...+.......++.++|+||++.|++.
T Consensus 477 sPDnL~fd~~G~--LWf~TD~~~~~~g~~~~~gnn~v~~~dp~-tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 477 SPDGLGFDKAGR--LWILTDGDSSNAGDFAGMGNNQMLCADPA-TGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCC--EEEEECCCCCCSGGGTTCCSCEEEEECTT-TCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCceEECCCCC--EEEEeCCCcCccccccccCCceEEEEeCC-CCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 456788888886 233 3211 1256666655 5554444431234678999999999987654
No 359
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=71.35 E-value=13 Score=30.20 Aligned_cols=70 Identities=6% Similarity=0.040 Sum_probs=46.1
Q ss_pred EEEEEEeCCCCceEEEEecCCCeEEEEEccCCC---ccceeecc-CcccCeE-EEEEcCCCCEEEEEcCCCeEEE
Q psy6859 139 VECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNG---TPLHVLDR-LHTKPVV-LIKFNPIYQVVVSVDKAGILEY 208 (261)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~---~~~~~~~~-~~~~~v~-~~~~~~~~~~l~~~~~dg~i~i 208 (261)
.+.++......+.++..|+.+|.|.-.-+.... ..+..+.. ....+|. .|.+++++.+|+.++.++.++|
T Consensus 402 lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 402 LTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp EEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred eEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 455666556667778889999998765554121 12333321 2356785 8999999999999987775554
No 360
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=70.39 E-value=10 Score=33.28 Aligned_cols=36 Identities=14% Similarity=0.205 Sum_probs=28.6
Q ss_pred CeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEe
Q psy6859 5 PITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHF 42 (261)
Q Consensus 5 ~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~ 42 (261)
.+.+++..+ ..++++-+.|+++|+|++.++ +++.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~--~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTN--QCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTT--EEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCC--CeEeee
Confidence 466777777 678999999999999999987 555543
No 361
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=69.58 E-value=22 Score=29.20 Aligned_cols=59 Identities=10% Similarity=0.008 Sum_probs=37.0
Q ss_pred EEEEEEeCCCCceEEEEecC------------CCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEE
Q psy6859 139 VECIHYLGDAIPTAAVSDQD------------SSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSV 200 (261)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~------------d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 200 (261)
.-.+.|+|.+. + +++-.. ++.+.+.+.. +++..+-+.......++.++|+||++.|++.
T Consensus 478 PDNL~fd~~G~-L-wI~eDg~~~~~~~~~~~gnn~~~~~~~~-~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGR-L-WILTDGDSSNAGDFAGMGNNQMLCADPA-TGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCC-E-EEEECCCCCCSGGGTTTCSCEEEEECTT-TCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCC-E-EEEecCCCcccccccccccceEEEEeCC-CCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 46788999987 2 333211 1235555554 5555444442456789999999999977654
No 362
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=64.87 E-value=28 Score=29.16 Aligned_cols=62 Identities=13% Similarity=0.104 Sum_probs=41.1
Q ss_pred CCCCceEEEEecCCCeEE-EEEccCCCc-------cceeec-cCcccCeEEEEEcCCCCEEEEEcCCCeEEE
Q psy6859 146 GDAIPTAAVSDQDSSHVH-IYDCKGNGT-------PLHVLD-RLHTKPVVLIKFNPIYQVVVSVDKAGILEY 208 (261)
Q Consensus 146 ~~~~~~~~~~~~~d~~i~-i~d~~~~~~-------~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 208 (261)
.++.+.++..|+.+|.|. +.-.. ... .+.++. .....+|..|.++++.++|++++.++.++|
T Consensus 425 ~~g~ytVlFLGT~~G~I~Kvv~~~-~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 425 EDGQYDVMFIGTDVGTVLKVVSVP-KETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp SSCEEEEEEEEETTSEEEEEEEEC-------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred CCCcEEEEEEECCCCeEEEEEEcC-CCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 455567788888999975 33322 111 222222 135678999999999999999998886655
No 363
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=64.64 E-value=46 Score=25.59 Aligned_cols=139 Identities=12% Similarity=0.110 Sum_probs=75.6
Q ss_pred cEEEEEcccc--ceeeeeeccCc------ceeEEEEe-e--c---CCceeeeeeecCCCCeEEEEEcCCCceeeEEeecC
Q psy6859 69 AMKVFDVINF--DMINMIKLDFT------PLTVECIH-Y--L---GDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDF 134 (261)
Q Consensus 69 ~v~~wd~~~~--~~~~~~~~~~~------~~~~~~~~-~--~---~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~ 134 (261)
.|.+||+.++ +.++.+.++.. ....+.+. . . ++..+. ++-+....|.++|+.+++.-+.+....
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aY--ItD~~~~gLIVydl~~~~swRv~~~~~ 201 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVY--ITNFLRGALFIYDHKKQDSWNVTHPTF 201 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEE--EEETTTTEEEEEETTTTEEEEEECGGG
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEE--EEcCCCCcEEEEECCCCcEEEEccCCC
Confidence 5889999999 99988876432 22333333 1 1 122222 233457889999999887655442111
Q ss_pred Cc----------------ceEEEEEEeCC----CCceEEEEecCCCeEEEEE---ccCCC---ccceeeccCcc---cCe
Q psy6859 135 TP----------------LTVECIHYLGD----AIPTAAVSDQDSSHVHIYD---CKGNG---TPLHVLDRLHT---KPV 185 (261)
Q Consensus 135 ~~----------------~~~~~~~~~~~----~~~~~~~~~~~d~~i~i~d---~~~~~---~~~~~~~~~~~---~~v 185 (261)
.+ ..+..++.+|+ +.. +....-....++--. ++ .. ..++.+ +.. ..-
T Consensus 202 ~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~-LYf~plss~~ly~V~T~~L~-~~~~~~~v~~~--G~kg~~s~~ 277 (381)
T 3q6k_A 202 KAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRP-AYYLAGSAIKVYSVNTKELK-QKGGKLNPELL--GNRGKYNDA 277 (381)
T ss_dssp SCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCE-EEEEESSCSEEEEEEHHHHS-STTCCCCCEEE--EECCTTCCE
T ss_pred ccccCcceEECCEEeEeccCceEEEecCCcCCCCeE-EEEEECCCCcEEEEEHHHhh-CcchhhceEEe--eecCCCCCc
Confidence 11 24566777776 333 333333222333222 11 11 112222 222 233
Q ss_pred EEEEEc-CCCCEEEEEcCCCeEEEeeccc
Q psy6859 186 VLIKFN-PIYQVVVSVDKAGILEYWSGYK 213 (261)
Q Consensus 186 ~~~~~~-~~~~~l~~~~~dg~i~iwd~~~ 213 (261)
..++++ .+|.++++--....|..|+...
T Consensus 278 ~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 278 IALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp EEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred ceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 456775 6777777777888999999753
No 364
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=62.56 E-value=51 Score=25.37 Aligned_cols=99 Identities=11% Similarity=0.056 Sum_probs=63.3
Q ss_pred CCeEEEEEcCCC--ceeeEEeecC----CcceEEEEEEe---CC---CCceEEEEecCCCeEEEEEccCCCccceeec--
Q psy6859 113 SSRVHIYDCKGN--DMINMIKLDF----TPLTVECIHYL---GD---AIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD-- 178 (261)
Q Consensus 113 d~~i~i~d~~~~--~~~~~~~~~~----~~~~~~~~~~~---~~---~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-- 178 (261)
.-.|.+||+++. +.++.+.... ....+..+.+. |. ....+.++-...+.|.+||+. +++..+...
T Consensus 122 ~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~-~~~swRv~~~~ 200 (381)
T 3q6k_A 122 RPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHK-KQDSWNVTHPT 200 (381)
T ss_dssp CCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETT-TTEEEEEECGG
T ss_pred CceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECC-CCcEEEEccCC
Confidence 346889999999 8888887642 12356777777 22 133456777778899999998 664433321
Q ss_pred --c---------Cc----ccCeEEEEEcCC----CCEEEEEcCCCeEEEeeccc
Q psy6859 179 --R---------LH----TKPVVLIKFNPI----YQVVVSVDKAGILEYWSGYK 213 (261)
Q Consensus 179 --~---------~~----~~~v~~~~~~~~----~~~l~~~~~dg~i~iwd~~~ 213 (261)
. +. ...+..|+++|+ ++.|+-....+ -++|.+.+
T Consensus 201 ~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T 253 (381)
T 3q6k_A 201 FKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNT 253 (381)
T ss_dssp GSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEH
T ss_pred CccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEH
Confidence 0 10 236788999998 67776555444 35565544
No 365
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=59.51 E-value=11 Score=33.84 Aligned_cols=36 Identities=14% Similarity=0.205 Sum_probs=27.1
Q ss_pred CeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEe
Q psy6859 5 PITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHF 42 (261)
Q Consensus 5 ~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~ 42 (261)
.+.+++..+ ..++++-+.|+++|+|++.++ +++.+.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~--~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTN--QCVETI 275 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTT--EEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCC--CeEEee
Confidence 344455556 678999999999999999987 555543
No 366
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=58.83 E-value=58 Score=26.37 Aligned_cols=71 Identities=11% Similarity=0.117 Sum_probs=44.8
Q ss_pred EEEEEEeCCCCceEEEEecCCCeEEEEEccCC--CccceeeccCcccCe-EEEEEcCCCCEEEEEcCCCeEEEe
Q psy6859 139 VECIHYLGDAIPTAAVSDQDSSHVHIYDCKGN--GTPLHVLDRLHTKPV-VLIKFNPIYQVVVSVDKAGILEYW 209 (261)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~iw 209 (261)
.+.++......+.++..|+++|.|.-.-.... ...+..+......+| ..|.++++..+|+.++.++.+++-
T Consensus 389 lT~IaVd~~~g~tV~FlGT~~G~l~Kv~~~~~~~~~~~ee~~v~~~~pi~~~l~l~~~~~~Lyv~s~~~V~~vp 462 (528)
T 3ol2_B 389 LTAVAVTMEDGHTIAFLGDSQGQLHRVYLGPGSDGHPYSTQSIQQGSAVSRDLTFDGTFEHLYVMTQSTLLKVP 462 (528)
T ss_dssp EEEEEEEEETTEEEEEEEETTSEEEEEECSSSCCSCCSEEEESSTTSCCCSCCEECTTSSEEEEECSSCEEEEE
T ss_pred eEEEEEEeecCeEEEEEECCCCeEEEEEEcCCCCeeEEeeeccCCCCcceeeEEEecCCCEEEEEeCCEEEEEE
Confidence 44555443333567778888999874444312 223344432244577 489999999999999988876654
No 367
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=53.36 E-value=55 Score=27.42 Aligned_cols=59 Identities=10% Similarity=0.084 Sum_probs=38.1
Q ss_pred ceEEEEecCCCeEEEE-EccCCCccceeec-cCcccCeEEEEEcCCC--CEEEEEcCCCeEEE
Q psy6859 150 PTAAVSDQDSSHVHIY-DCKGNGTPLHVLD-RLHTKPVVLIKFNPIY--QVVVSVDKAGILEY 208 (261)
Q Consensus 150 ~~~~~~~~~d~~i~i~-d~~~~~~~~~~~~-~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i 208 (261)
+.++..|+.+|.|.-. ........+..+. .....+|..|.++++. .+|++++.++.+++
T Consensus 415 ~tV~flGT~~G~l~Kvv~~~~~~~~~ee~~~~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 415 YDVMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp EEEEEEEETTSEEEEEEECSSSEEEEEEEECCTTCCCCCEEEECCSSSSCEEEEECSSCEEEE
T ss_pred eEEEEEEcCCcEEEEEEecCCCceEEEEecccCCCCcceeeEeccCCCccEEEEEEcCeEEEE
Confidence 5567788889987533 4331112222222 1345788899999988 89999988876655
No 368
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=51.73 E-value=65 Score=26.50 Aligned_cols=61 Identities=5% Similarity=-0.024 Sum_probs=39.2
Q ss_pred CceEEEEecCCCeEEEEEccCCCc-----cceeec-cCcccCeEEEEEcCCCCEEEEEcCCCeEEEe
Q psy6859 149 IPTAAVSDQDSSHVHIYDCKGNGT-----PLHVLD-RLHTKPVVLIKFNPIYQVVVSVDKAGILEYW 209 (261)
Q Consensus 149 ~~~~~~~~~~d~~i~i~d~~~~~~-----~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 209 (261)
.+.++..|+++|.|.-.-...... .+..+. .....+|..+.++++...|+.++.++.+++-
T Consensus 379 ~ytVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qVP 445 (590)
T 3nvq_A 379 TFHVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQVP 445 (590)
T ss_dssp EEEEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEEE
T ss_pred ceEEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEcc
Confidence 456677888899876433321221 122222 0245688999999999999999888766654
No 369
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=45.74 E-value=89 Score=25.41 Aligned_cols=68 Identities=13% Similarity=0.100 Sum_probs=42.5
Q ss_pred CeEEEEEcC-C--CeEEEecCCCeEEEEeccCCc-e-eeeEEe--ecccccee-EEEEeeCCCEEEEEeCCCcEEE
Q psy6859 5 PITHVVVTK-T--DFVITASNDGHIKFWKKQEEG-I-EFVKHF--RSHLGVIH-SICTNYNGTLLCTVASDKAMKV 72 (261)
Q Consensus 5 ~v~~~~~~~-~--~~l~s~~~d~~i~iw~~~~~~-~-~~~~~~--~~~~~~v~-~~~~~~~~~~l~s~~~dg~v~~ 72 (261)
.+++|+... + ..+..|..+|.|.-..+.... . .....+ .....+|. .|.++++..+|+.++.++.++|
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 466777665 3 367788999988665554321 1 122222 22246785 8999998889998877654444
No 370
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=44.49 E-value=1.2e+02 Score=25.11 Aligned_cols=57 Identities=11% Similarity=0.094 Sum_probs=36.7
Q ss_pred eEEEecCCCeEEEEeccCCc----eeeeEEee--ccccceeEEEEeeCCCEEEEEeCCCcEEE
Q psy6859 16 FVITASNDGHIKFWKKQEEG----IEFVKHFR--SHLGVIHSICTNYNGTLLCTVASDKAMKV 72 (261)
Q Consensus 16 ~l~s~~~d~~i~iw~~~~~~----~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~v~~ 72 (261)
.+..|..+|.|.-.-..... ...+..+. ....+|..+.++++...|+.++.++.+++
T Consensus 382 VlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qV 444 (590)
T 3nvq_A 382 VLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQV 444 (590)
T ss_dssp EEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEE
T ss_pred EEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEc
Confidence 57788899987644332211 11222232 24568899999998889998888765555
No 371
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=43.64 E-value=90 Score=22.58 Aligned_cols=181 Identities=10% Similarity=-0.025 Sum_probs=93.3
Q ss_pred CeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccc-ceeee
Q psy6859 5 PITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINF-DMINM 83 (261)
Q Consensus 5 ~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~-~~~~~ 83 (261)
.|..|+......++. . ||.|..|-....+..-+. ......|..++...+ ..+.-. ||.|..|-.... ++-..
T Consensus 25 ~i~~ia~G~~h~~~l-~-~G~v~~wG~n~~Gqlg~p--~~~~~~i~~ia~G~~--hs~~l~-~G~v~~wG~n~~Gqlg~P 97 (282)
T 3qhy_B 25 GVDAIAGGYFHGLAL-K-GGKVLGWGANLNGQLTMP--AATQSGVDAIAAGNY--HSLALK-DGEVIAWGGNEDGQTTVP 97 (282)
T ss_dssp SCCEEEECSSEEEEE-E-TTEEEEEECCSSSTTSCC--GGGGSCCCEEEECSS--EEEEEE-TTEEEEEECCTTSTTCCC
T ss_pred CCcEEEeCCCeEEEE-E-CCEEEEEeCCCCCCCCCC--ccCCCCEEEEEeCCC--EEEEEE-CCEEEEeeCCCCCCCCCC
Confidence 456666544333444 4 899999976543211110 112235666665443 322224 899999976532 22111
Q ss_pred eeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEE
Q psy6859 84 IKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVH 163 (261)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 163 (261)
.... ..+..+.......+++ . ++.|..|-......+... . .....+..++.-... .+++ . ||.++
T Consensus 98 ~~~~---~~v~~ia~G~~hs~al----~-~G~v~~wG~n~~gqlg~~-~-~~~~~i~~i~~G~~~--~~~l--~-~G~v~ 162 (282)
T 3qhy_B 98 AEAR---SGVDAIAAGAWASYAL----K-DGKVIAWGDDSDGQTTVP-A-EAQSGVTALDGGVYT--ALAV--K-NGGVI 162 (282)
T ss_dssp GGGS---SSEEEEEEETTEEEEE----E-TTEEEEEECCTTSTTSCC-G-GGGSSEEEEEECSSE--EEEE--E-TTEEE
T ss_pred cccC---CCeEEEECcCCEEEEE----e-CCeEEEecCCCCCcCCCC-c-cCCCCeEEEEcccCE--EEEE--E-CCEEE
Confidence 1111 1344455545555555 6 999999976543222110 0 012245566544433 2233 3 69999
Q ss_pred EEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecc
Q psy6859 164 IYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGY 212 (261)
Q Consensus 164 i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 212 (261)
.|-....+++-... .....|..++..... .++. .||.|..|-..
T Consensus 163 ~wG~n~~gqlg~p~--~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n 206 (282)
T 3qhy_B 163 AWGDNYFGQTTVPA--EAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDN 206 (282)
T ss_dssp EEECCTTSTTSCCG--GGGSSEEEEEECSSE-EEEE--ETTEEEEEECC
T ss_pred EecCCCCCCCCCce--ecCCCeEEEEecCCE-EEEE--ECCeEEEEECC
Confidence 99876333332111 234567777665443 2333 58999999653
No 372
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=39.98 E-value=1.2e+02 Score=24.31 Aligned_cols=68 Identities=10% Similarity=0.121 Sum_probs=42.0
Q ss_pred CeEEEEEcC-----C--CeEEEecCCCeEEEEeccCCc------eeeeEEeec--cccceeEEEEeeCCCEEEEEeCCCc
Q psy6859 5 PITHVVVTK-----T--DFVITASNDGHIKFWKKQEEG------IEFVKHFRS--HLGVIHSICTNYNGTLLCTVASDKA 69 (261)
Q Consensus 5 ~v~~~~~~~-----~--~~l~s~~~d~~i~iw~~~~~~------~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~dg~ 69 (261)
..++|+... + ..+..|..+|.|.-.-+.... ...+..+.- ...+|..|.++++.++|..++.++.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 356666652 2 357788999987544332211 112223322 3578999999999999999988876
Q ss_pred EEE
Q psy6859 70 MKV 72 (261)
Q Consensus 70 v~~ 72 (261)
++|
T Consensus 485 ~~v 487 (495)
T 1q47_A 485 AQL 487 (495)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 373
>3oky_B Putative uncharacterized protein; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A*
Probab=39.35 E-value=1.3e+02 Score=24.69 Aligned_cols=70 Identities=7% Similarity=-0.034 Sum_probs=44.2
Q ss_pred EEEEEe----CCCCceEEEEecCCCeEE-EEEccC-C-----Cccceeecc-C---------cccCeEEEEEcCCCCEEE
Q psy6859 140 ECIHYL----GDAIPTAAVSDQDSSHVH-IYDCKG-N-----GTPLHVLDR-L---------HTKPVVLIKFNPIYQVVV 198 (261)
Q Consensus 140 ~~~~~~----~~~~~~~~~~~~~d~~i~-i~d~~~-~-----~~~~~~~~~-~---------~~~~v~~~~~~~~~~~l~ 198 (261)
+.++.. +++.+.++..|+++|.|. +..... . ...+.++.. . ...+|..|.++++...|+
T Consensus 406 T~IaVd~~~g~~~~ytVlFLGTd~G~l~Kvv~~~~~~~~~~~~~~iEEi~vf~~~~~~~~~~~~~pI~~L~ls~~~~~LY 485 (565)
T 3oky_B 406 TKIAVDNAAGPYQNHTVVFLGSEKGIILKFLARIGSSGFLNGSLFLEEMNVYNPEKCSYDGVEDKRIMGMQLDRASGSLY 485 (565)
T ss_dssp EEEEEEEEETTTTCEEEEEEEETTSEEEEEEECC-----CCCCEEEEEEECCCHHHHCBTTBCCCCCCEEEEEGGGTEEE
T ss_pred EEEEEEEEecCCCceEEEEEECCCCeEEEEEecCCCCccccccEEEEEEEEeccccccccccCCCceEEEEEcCCCCEEE
Confidence 555554 245677888899999975 433220 0 112222220 1 146788999999999999
Q ss_pred EEcCCCeEEEe
Q psy6859 199 SVDKAGILEYW 209 (261)
Q Consensus 199 ~~~~dg~i~iw 209 (261)
.++.++.+++-
T Consensus 486 V~s~~~V~qVP 496 (565)
T 3oky_B 486 VAFSTCVIKVP 496 (565)
T ss_dssp EECSSCEEEEE
T ss_pred EEecCeEEEee
Confidence 99988877664
No 374
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=37.89 E-value=1.1e+02 Score=22.06 Aligned_cols=181 Identities=9% Similarity=-0.013 Sum_probs=91.5
Q ss_pred CeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccc-cceeee
Q psy6859 5 PITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVIN-FDMINM 83 (261)
Q Consensus 5 ~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~-~~~~~~ 83 (261)
.|..|+......++. . ||.|..|-....+..-+ -..-...|..++...+ ..+.-. ||.|..|-... +++-..
T Consensus 64 ~i~~ia~G~~hs~~l-~-~G~v~~wG~n~~Gqlg~--P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~ 136 (282)
T 3qhy_B 64 GVDAIAAGNYHSLAL-K-DGEVIAWGGNEDGQTTV--PAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVP 136 (282)
T ss_dssp CCCEEEECSSEEEEE-E-TTEEEEEECCTTSTTCC--CGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCC
T ss_pred CEEEEEeCCCEEEEE-E-CCEEEEeeCCCCCCCCC--CcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCC
Confidence 455666554434444 4 89999997654221100 0011235666665444 444445 89999997654 222111
Q ss_pred eeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEE
Q psy6859 84 IKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVH 163 (261)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 163 (261)
.. ....+..+.......+++ . |+.|..|-......+.. ... ....+..++.-.... ++. .+|.++
T Consensus 137 ~~---~~~~i~~i~~G~~~~~~l----~-~G~v~~wG~n~~gqlg~-p~~-~~~~v~~i~~G~~hs---~al--~~G~v~ 201 (282)
T 3qhy_B 137 AE---AQSGVTALDGGVYTALAV----K-NGGVIAWGDNYFGQTTV-PAE-AQSGVDDVAGGIFHS---LAL--KDGKVI 201 (282)
T ss_dssp GG---GGSSEEEEEECSSEEEEE----E-TTEEEEEECCTTSTTSC-CGG-GGSSEEEEEECSSEE---EEE--ETTEEE
T ss_pred cc---CCCCeEEEEcccCEEEEE----E-CCEEEEecCCCCCCCCC-cee-cCCCeEEEEecCCEE---EEE--ECCeEE
Confidence 11 112234444433433333 4 79999997654322211 000 123466666544432 333 489999
Q ss_pred EEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecc
Q psy6859 164 IYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGY 212 (261)
Q Consensus 164 i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 212 (261)
.|=....+++-... .....|..++...... ++.. ||.+..|-..
T Consensus 202 ~wG~n~~gqlg~p~--~~~~~v~~i~~G~~h~-~al~--~g~v~~wG~n 245 (282)
T 3qhy_B 202 AWGDNRYKQTTVPT--EALSGVSAIASGEWYS-LALK--NGKVIAWGSS 245 (282)
T ss_dssp EEECCTTSTTCCCG--GGGSSCCEEEECSSCE-EEEE--TTEEEEESTT
T ss_pred EEECCCCCCCCCCc--ccCCCceEEEcCCCEE-EEEE--CCEEEEecCC
Confidence 99876333332111 1234577776554433 3333 8999999753
No 375
>3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okt_A* 4gza_A
Probab=36.55 E-value=58 Score=27.40 Aligned_cols=68 Identities=6% Similarity=-0.017 Sum_probs=42.4
Q ss_pred EEEeCCCCceEEEEecCCCeEEEEEccCCC---ccceeec-cCcccCe-EEEEEcCCCCEEEEEcCCCeEEEe
Q psy6859 142 IHYLGDAIPTAAVSDQDSSHVHIYDCKGNG---TPLHVLD-RLHTKPV-VLIKFNPIYQVVVSVDKAGILEYW 209 (261)
Q Consensus 142 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~---~~~~~~~-~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~iw 209 (261)
++......+.++..|+++|.|.-.-+.... ..+.++. .....+| ..+.++++..+|+.++.++.+++-
T Consensus 404 VaV~~~~~~tVlFLGT~~G~l~Kv~~~~~~~~~~~~ee~~v~~~~~pI~~~l~l~~~~~~Lyv~s~~~V~qvP 476 (681)
T 3oky_A 404 VASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRVP 476 (681)
T ss_dssp CEEEEETTEEEEEEEBTTSEEEEEECCCTTTCCEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEEE
T ss_pred EEEEecCceEEEEEECCCceEEEEEECCCCCceEEEEEeeeccCCCceeeeeEEcCCCCEEEEEecCEEEEEE
Confidence 333334455677888999998755443111 1233332 1234566 689999998899998887766653
No 376
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=34.67 E-value=1.4e+02 Score=22.22 Aligned_cols=148 Identities=13% Similarity=0.035 Sum_probs=75.6
Q ss_pred eCCCEEEEEeCCCcEEEEEccccce----eeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEc---CC-----
Q psy6859 56 YNGTLLCTVASDKAMKVFDVINFDM----INMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDC---KG----- 123 (261)
Q Consensus 56 ~~~~~l~s~~~dg~v~~wd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~---~~----- 123 (261)
|+..++++.+.+|.|+--.+.+.+. ...++... ...........+.++.. +..|.+.-+.. ..
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~D-~l~~~~~~~t~d~ll~f----T~~Gr~~~~~~~elp~~~r~a 77 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDTD-RLLAMLEMNTKDVLLLF----TNKGNYLYCPVHELPDIRWKD 77 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTTC-CEEEEEEEETTSEEEEE----ETTSEEEEEEGGGSCBCCTTS
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCCC-EEEEEEEECCCCEEEEE----ECCCEEEEEEHHHCcCCCCCC
Confidence 4566788889999998876653211 11122111 12222223334444444 56777655543 22
Q ss_pred -CceeeE-EeecCCcceEEEEEEeCC---CCceEEEEecCCCeEEEEEccCCCc------cceeeccCcccCeEEEEEcC
Q psy6859 124 -NDMINM-IKLDFTPLTVECIHYLGD---AIPTAAVSDQDSSHVHIYDCKGNGT------PLHVLDRLHTKPVVLIKFNP 192 (261)
Q Consensus 124 -~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~i~i~d~~~~~~------~~~~~~~~~~~~v~~~~~~~ 192 (261)
+.++.. +... ....+..+...++ ..+ ++..+.+|.++-..+. ... -+..+.......+..+....
T Consensus 78 ~G~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~--ll~~T~~G~iKrt~l~-e~~~~~r~~G~~ai~l~e~d~lv~~~~~~ 153 (323)
T 1wp5_A 78 LGQHIANIIPID-RDEEIIKAIPINDFELNGY--FLFVTRNGMVKKTELK-HYKAQRYSKPLTGINLKNDDQVVDVHLTD 153 (323)
T ss_dssp CCEEGGGTSCCC-TTCCEEEEEEESCTTSSCE--EEEEETTSEEEEEEGG-GGCCSCCSSCEECSCCCTTCCEEEEEEEC
T ss_pred CCcChhhccCCC-CCCEEEEEEEecccCCCce--EEEEeCCCeEEEeEHH-HhhhccccCceEEEEeCCCCEEEEEEEeC
Confidence 221111 2222 2224555443332 333 4555789999998875 221 12122111235555555555
Q ss_pred CCCEEEEEcCCCeEEEeecc
Q psy6859 193 IYQVVVSVDKAGILEYWSGY 212 (261)
Q Consensus 193 ~~~~l~~~~~dg~i~iwd~~ 212 (261)
....|+..+.+|.+..++..
T Consensus 154 ~~~~i~l~T~~G~~irf~~~ 173 (323)
T 1wp5_A 154 GMNELFLVTHNGYALWFDES 173 (323)
T ss_dssp SCSEEEEEETTSEEEEEEGG
T ss_pred CCCEEEEEeCCCcEEEEEHH
Confidence 55677778889988888764
No 377
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=34.02 E-value=1.5e+02 Score=22.20 Aligned_cols=190 Identities=8% Similarity=-0.070 Sum_probs=99.2
Q ss_pred CCeEEEecCCCeEEEEeccCCc-------eeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccc---------
Q psy6859 14 TDFVITASNDGHIKFWKKQEEG-------IEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVIN--------- 77 (261)
Q Consensus 14 ~~~l~s~~~d~~i~iw~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~--------- 77 (261)
...+++.+.+|.|+--.+.+-. ......++ ..+.+..+........|+.-+..|.++......
T Consensus 3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~k-e~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~ 81 (327)
T 3uc1_A 3 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLK-QDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTAR 81 (327)
T ss_dssp CEEEEEEETTSEEEEEEHHHHHHHC--------CCCC-GGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSC
T ss_pred ccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccC-CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCC
Confidence 3467788889998866543210 01111222 234455555555555777777888766555322
Q ss_pred cceeee---eeccCcceeEEEEee--cCCceeeeeeecCCCCeEEEEEcCCCc-----eeeEEeecCCcceEEEEEEeCC
Q psy6859 78 FDMINM---IKLDFTPLTVECIHY--LGDAIPTAAVSDQDSSRVHIYDCKGND-----MINMIKLDFTPLTVECIHYLGD 147 (261)
Q Consensus 78 ~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~s~~~d~~i~i~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 147 (261)
|..+.. +...........+.. +...++.+ +.+|.++.-.+.... -+..+.... ...+..+.....
T Consensus 82 G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~----T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~ 156 (327)
T 3uc1_A 82 GQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLA----TRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSA 156 (327)
T ss_dssp CEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEE----ETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECT
T ss_pred CEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEE----cCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecC
Confidence 222111 111222223333332 23445555 799999988765422 122233332 234444444444
Q ss_pred CCceEEEEecCCCeEEEEEcc--C---CC-----ccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859 148 AIPTAAVSDQDSSHVHIYDCK--G---NG-----TPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK 213 (261)
Q Consensus 148 ~~~~~~~~~~~d~~i~i~d~~--~---~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 213 (261)
... ++..+..|.+..+... . .+ ...-.+ .....|.++...+.+.+|+..+..|.++.-.+..
T Consensus 157 ~d~--ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L--~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e 228 (327)
T 3uc1_A 157 GDD--LLLVSANGQSIRFSATDEALRPMGRATSGVQGMRF--NIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEE 228 (327)
T ss_dssp TCE--EEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCC--CTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred CCE--EEEEECCCeEEEEECcccccCcCCcCCCCeeeecC--CCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHH
Confidence 444 3344568888777654 1 11 111223 2345677776666667888888999998887643
No 378
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=33.03 E-value=2.2e+02 Score=23.93 Aligned_cols=57 Identities=4% Similarity=0.169 Sum_probs=35.9
Q ss_pred eEEEecCCCeEEEEeccCCceeeeEEee--ccccceeEEEEeeCC--CEEEEEeCCCcEEE
Q psy6859 16 FVITASNDGHIKFWKKQEEGIEFVKHFR--SHLGVIHSICTNYNG--TLLCTVASDKAMKV 72 (261)
Q Consensus 16 ~l~s~~~d~~i~iw~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~--~~l~s~~~dg~v~~ 72 (261)
.+..|..+|.|.-.-....+...+..+. ....+|..|.++++. .+|+.++.++.+++
T Consensus 417 V~flGT~~G~l~Kvv~~~~~~~~~ee~~~~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 417 VMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp EEEEEETTSEEEEEEECSSSEEEEEEEECCTTCCCCCEEEECCSSSSCEEEEECSSCEEEE
T ss_pred EEEEEcCCcEEEEEEecCCCceEEEEecccCCCCcceeeEeccCCCccEEEEEEcCeEEEE
Confidence 6778999998754322222212222222 234689999999887 88988887765554
No 379
>1sr4_A CDT A, cytolethal distending toxin subunit A; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: b.42.2.1 PDB: 2f2f_A
Probab=32.49 E-value=87 Score=21.60 Aligned_cols=98 Identities=7% Similarity=-0.037 Sum_probs=51.6
Q ss_pred EecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEE-EeCCCcEEEEEccccceeeeeeccCcceeEEEEe
Q psy6859 19 TASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCT-VASDKAMKVFDVINFDMINMIKLDFTPLTVECIH 97 (261)
Q Consensus 19 s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~ 97 (261)
.+-....+.+|.+..+ ..+.-+..-. +..|-.....-+. .-.+|+|++-+..++.++..+... .....
T Consensus 64 m~~ng~~lt~Wa~~~~--nw~wgY~~~d----s~~FG~~r~W~i~~~~p~G~VqFvN~~TgtCL~ay~nG-----vv~~~ 132 (206)
T 1sr4_A 64 MGQNGALLTVWALAKR--NWLWAYPNIY----SQDFGNIRNWKMEPGKHREYFRFVNQSLGTCVEAYGNG-----LIHDI 132 (206)
T ss_dssp EETTSEEEEECSCSTT--CBEEEEEGGG----CGGGGGGGCEEEEECSSTTCEEEEETTTCCEEEEETTE-----EEEEC
T ss_pred EcCCCCEEEEEecCCC--cceeeecccc----cCCcCCcceeEEEeecCCCEEEEEECCCCceeeeccCC-----eEEec
Confidence 3445556788988766 3333332211 1112222223333 457788999998888888765421 11221
Q ss_pred ec-C--CceeeeeeecCCCCeEEEEEcCCCceeeE
Q psy6859 98 YL-G--DAIPTAAVSDQDSSRVHIYDCKGNDMINM 129 (261)
Q Consensus 98 ~~-~--~~~~~~~~s~~~d~~i~i~d~~~~~~~~~ 129 (261)
.+ + ..++.... ..+|.+.|-++.+++++..
T Consensus 133 C~~s~~~Q~wsiiP--ttnGAVQIKnvatg~CL~t 165 (206)
T 1sr4_A 133 CSLDKLAQEFELLP--TDSGAVVIKSVSQGRCVTY 165 (206)
T ss_dssp CCTTCGGGCEEEEE--BTTSCEEEEETTTCCEEEE
T ss_pred CCCCCcccEEEEec--CCCccEEEEECCCCccCCc
Confidence 22 1 12333322 4567777778877777665
No 380
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=30.30 E-value=2.5e+02 Score=23.68 Aligned_cols=57 Identities=7% Similarity=0.078 Sum_probs=35.8
Q ss_pred eEEEecCCCeEE-EEeccCCc-----eeeeEEee--ccccceeEEEEeeCCCEEEEEeCCCcEEE
Q psy6859 16 FVITASNDGHIK-FWKKQEEG-----IEFVKHFR--SHLGVIHSICTNYNGTLLCTVASDKAMKV 72 (261)
Q Consensus 16 ~l~s~~~d~~i~-iw~~~~~~-----~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~v~~ 72 (261)
.+..|..+|.|. +....... ...+..++ ....+|..|.++++.++|+.++.++.++|
T Consensus 431 VlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 431 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 577889999875 32221110 01222221 24568999999999999999988875554
No 381
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=24.48 E-value=3.4e+02 Score=23.30 Aligned_cols=62 Identities=18% Similarity=0.165 Sum_probs=34.4
Q ss_pred CCeEEEEEcC--CCeEEEecCCCeEEEEeccCCceeeeEEeec----cccceeEEEEeeC-CCEEEEEe
Q psy6859 4 SPITHVVVTK--TDFVITASNDGHIKFWKKQEEGIEFVKHFRS----HLGVIHSICTNYN-GTLLCTVA 65 (261)
Q Consensus 4 ~~v~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~----~~~~v~~~~~~~~-~~~l~s~~ 65 (261)
..|.+|+++| ...++.+...+.|...+=.....+.+..... ....|.+|++.|. .+.++.+.
T Consensus 15 g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~ 83 (789)
T 1sqj_A 15 GYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQ 83 (789)
T ss_dssp SCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEE
T ss_pred CcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEe
Confidence 5799999998 3566677766765544322222222211010 1246899999873 33444443
No 382
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=23.68 E-value=3.1e+02 Score=22.63 Aligned_cols=126 Identities=11% Similarity=0.077 Sum_probs=62.2
Q ss_pred EEEEEccccceeeeeeccCcc--e--------------eEEEEeecCCceeeeeeecC-CCCeEEEEEcCCCceeeEEee
Q psy6859 70 MKVFDVINFDMINMIKLDFTP--L--------------TVECIHYLGDAIPTAAVSDQ-DSSRVHIYDCKGNDMINMIKL 132 (261)
Q Consensus 70 v~~wd~~~~~~~~~~~~~~~~--~--------------~~~~~~~~~~~~~~~~~s~~-~d~~i~i~d~~~~~~~~~~~~ 132 (261)
+.++|=.+|+.+..+...... . .......++.....+++-+- ....+..||.+++++......
T Consensus 231 L~vfdG~TG~~l~~~~~~p~rg~~~~WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~ 310 (591)
T 2zux_A 231 LTVFQGSTGKELVTANFEPARGNVSDWGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTL 310 (591)
T ss_dssp EEEEETTTCCEEEEEECSSCCCCGGGGTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEE
T ss_pred EEEEeCCCCCEEecccCCCCCCcccccccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEEEEEe
Confidence 788998888888776542111 1 11111223332222211111 123578888887766444433
Q ss_pred cCCc-----------ceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCC--CEEEE
Q psy6859 133 DFTP-----------LTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIY--QVVVS 199 (261)
Q Consensus 133 ~~~~-----------~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~ 199 (261)
.... ....-..+..|+..-+++ |+ .++|- .++.+.....+|...+.--.|.|+. ..++.
T Consensus 311 d~~~~~~~~~~gqg~h~~~vaDVDgDG~dEIv~-Gs-----~~iD~--dG~~L~st~~gHGDa~hv~dldP~r~GlEv~~ 382 (591)
T 2zux_A 311 DSSKSGNEAFAGQGNHNLSIADVDGDGKDEIIF-GS-----MAVDH--DGKGMYSTGLGHGDALHTGDLDPGRPGLEVFQ 382 (591)
T ss_dssp ETTSTTCGGGSSCCCSCCEEECCSSSSSCEEEE-TT-----EEECT--TSCEEEECSCCCCSCEEEECCCTTSSSCEEEE
T ss_pred cCCCCCcccccccCCCCCeeEeCCCCCCceEEE-ee-----eEECC--CCCEeeeCCCCCCCeeEEeecCCCCCCcEEEE
Confidence 2211 233444555666544332 22 13332 4555555544677777777777774 35555
Q ss_pred EcCC
Q psy6859 200 VDKA 203 (261)
Q Consensus 200 ~~~d 203 (261)
+.++
T Consensus 383 ~~E~ 386 (591)
T 2zux_A 383 VHED 386 (591)
T ss_dssp ECCC
T ss_pred EecC
Confidence 5443
No 383
>4fww_A Macrophage-stimulating protein receptor; beta-propeller, cysteine-knot, receptor tyrosine kinase, MAC stimulating protein, N-glycosylation; HET: NAG BMA; 1.85A {Homo sapiens}
Probab=23.20 E-value=1.6e+02 Score=23.74 Aligned_cols=70 Identities=7% Similarity=-0.044 Sum_probs=40.8
Q ss_pred eEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCcc---ceeec-cCcccCeEEEEEcCCCCEEEEEcCCCeEEE
Q psy6859 138 TVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTP---LHVLD-RLHTKPVVLIKFNPIYQVVVSVDKAGILEY 208 (261)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~---~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 208 (261)
.++.++..+...+.++..|+.+|.|.-.-+...... +..+. .....+|.. .++.++++|+.++.++.++|
T Consensus 406 ~~T~iav~~~~~~tV~FlGT~~G~l~Kv~~~~~~~~~~~~~~~~~~~~~~pi~~-~l~~~~~~Lyv~s~~~V~~v 479 (527)
T 4fww_A 406 QVTALYVTRLDNVTVAHMGTMDGRILQVELVRSLNYLLYVSNFSLGDSGQPVQR-DVSRLGDHLLFASGDQVFQV 479 (527)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEECSCCSSCCCEEEEEEETTSCCCBCS-CCEEETTEEEEEETTEEEEE
T ss_pred EEEEEEEeccCCEEEEEEECCCCeEEEEEEcCCCCcceEEEEEEecCCCceeeh-hcccCCCEEEEEECCEEEEE
Confidence 467777777667778889999999775544312221 12121 123344432 23445568888887776555
No 384
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=23.03 E-value=2.2e+02 Score=20.59 Aligned_cols=157 Identities=11% Similarity=0.008 Sum_probs=80.3
Q ss_pred cceeEEEEeeCCCEEEEEeCCCcEEEEE---ccccceeeeeeccCcceeEEEEee-cCCceeeeeeecCCCCeEEEEEcC
Q psy6859 47 GVIHSICTNYNGTLLCTVASDKAMKVFD---VINFDMINMIKLDFTPLTVECIHY-LGDAIPTAAVSDQDSSRVHIYDCK 122 (261)
Q Consensus 47 ~~v~~~~~~~~~~~l~s~~~dg~v~~wd---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~d~~i~i~d~~ 122 (261)
+.+..+.......+|+..+.+|.++--. +........+..... +..+.... +...++.+ +.+|.++...+.
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~~~e~-i~~v~~~~~~~~~~v~~----T~~G~iKr~~l~ 98 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKSREEK-IVGAFIREKFGNRLLLA----TKKGYVKKIPLA 98 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSSTTCC-EEEEEEGGGSCSEEEEE----ETTSEEEEEEGG
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCCCCCE-EEEEECCcCCCCEEEEE----eCCCEEEEEEHH
Confidence 3455554444445666667778766443 322211111221112 22221111 23344444 789999988865
Q ss_pred CCc----eeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccC--------CCccceeeccCcccCeEEEEE
Q psy6859 123 GND----MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKG--------NGTPLHVLDRLHTKPVVLIKF 190 (261)
Q Consensus 123 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~--------~~~~~~~~~~~~~~~v~~~~~ 190 (261)
.-. -+..+.... ...+..+........ ++..+..|.+..++... .+.....+ .....|.++..
T Consensus 99 ~~~~~~~G~~~i~lke-gD~l~~~~~~~~~~~--ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L--~~~d~vv~~~~ 173 (276)
T 3no0_A 99 EFEYKAQGMPIIKLTE-GDEVVSIASSVDETH--ILLFTKKGRVARFSVREVPPSTPGARGVQGIKL--EKNDETSGLRI 173 (276)
T ss_dssp GTTTCSTTEECSCCCT-TCCEEEEEECCSSCE--EEEEETTSEEEEEEGGGSCBCCTTCCCEECCCC--CTTCCEEEEEE
T ss_pred HhhhhcCCeEEEecCC-CCEEEEEEEeCCCCE--EEEEECCCEEEEEEhhhCCCcCCCCCCEEEEcc--CCCCEEEEEEE
Confidence 432 122223322 234444444444444 44445689888887641 01111223 23456666655
Q ss_pred cCCCCEEEEEcCCCeEEEeeccc
Q psy6859 191 NPIYQVVVSVDKAGILEYWSGYK 213 (261)
Q Consensus 191 ~~~~~~l~~~~~dg~i~iwd~~~ 213 (261)
.+++..++..+..|.++...+..
T Consensus 174 ~~~~~~ll~~T~~G~~kr~~~~e 196 (276)
T 3no0_A 174 WNGEPYLLVITAKGRVKKISHEE 196 (276)
T ss_dssp ESSCSEEEEEETTSCEEEEEGGG
T ss_pred eCCCCEEEEEeCCCcEEEeEHHH
Confidence 56667888888999998888753
No 385
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=23.01 E-value=3.1e+02 Score=22.31 Aligned_cols=68 Identities=12% Similarity=0.059 Sum_probs=42.4
Q ss_pred CeEEEEEcC-C--CeEEEecCCCeEEEEecc-CCceeeeEEee-ccccce-eEEEEeeCCCEEEEEeCCCcEEE
Q psy6859 5 PITHVVVTK-T--DFVITASNDGHIKFWKKQ-EEGIEFVKHFR-SHLGVI-HSICTNYNGTLLCTVASDKAMKV 72 (261)
Q Consensus 5 ~v~~~~~~~-~--~~l~s~~~d~~i~iw~~~-~~~~~~~~~~~-~~~~~v-~~~~~~~~~~~l~s~~~dg~v~~ 72 (261)
..++|+... + ..+..|..+|.|.-.-+. ......+..+. ....+| ..|.++++..+|+.++.++.+++
T Consensus 388 ~lT~IaVd~~~g~tV~FlGT~~G~l~Kv~~~~~~~~~~~ee~~v~~~~pi~~~l~l~~~~~~Lyv~s~~~V~~v 461 (528)
T 3ol2_B 388 QLTAVAVTMEDGHTIAFLGDSQGQLHRVYLGPGSDGHPYSTQSIQQGSAVSRDLTFDGTFEHLYVMTQSTLLKV 461 (528)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEECSSSCCSCCSEEEESSTTSCCCSCCEECTTSSEEEEECSSCEEEE
T ss_pred ceEEEEEEeecCeEEEEEECCCCeEEEEEEcCCCCeeEEeeeccCCCCcceeeEEEecCCCEEEEEeCCEEEEE
Confidence 367777765 3 356678899988754443 21111222221 234577 48999998889998888766555
No 386
>3oky_B Putative uncharacterized protein; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A*
Probab=22.84 E-value=3.2e+02 Score=22.46 Aligned_cols=67 Identities=19% Similarity=0.196 Sum_probs=41.7
Q ss_pred eEEEEEcC--C-----CeEEEecCCCeEEEEeccC------CceeeeEEeec-----------cccceeEEEEeeCCCEE
Q psy6859 6 ITHVVVTK--T-----DFVITASNDGHIKFWKKQE------EGIEFVKHFRS-----------HLGVIHSICTNYNGTLL 61 (261)
Q Consensus 6 v~~~~~~~--~-----~~l~s~~~d~~i~iw~~~~------~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l 61 (261)
.+.|+... + ..+..|+.+|.|.-.-... .+...+..+.- ...+|..|.++++...|
T Consensus 405 lT~IaVd~~~g~~~~ytVlFLGTd~G~l~Kvv~~~~~~~~~~~~~~iEEi~vf~~~~~~~~~~~~~pI~~L~ls~~~~~L 484 (565)
T 3oky_B 405 LTKIAVDNAAGPYQNHTVVFLGSEKGIILKFLARIGSSGFLNGSLFLEEMNVYNPEKCSYDGVEDKRIMGMQLDRASGSL 484 (565)
T ss_dssp EEEEEEEEEETTTTCEEEEEEEETTSEEEEEEECC-----CCCCEEEEEEECCCHHHHCBTTBCCCCCCEEEEEGGGTEE
T ss_pred eEEEEEEEEecCCCceEEEEEECCCCeEEEEEecCCCCccccccEEEEEEEEeccccccccccCCCceEEEEEcCCCCEE
Confidence 47777764 2 3577899999875332221 11122222221 14578899999988899
Q ss_pred EEEeCCCcEEE
Q psy6859 62 CTVASDKAMKV 72 (261)
Q Consensus 62 ~s~~~dg~v~~ 72 (261)
+.++.++.+++
T Consensus 485 YV~s~~~V~qV 495 (565)
T 3oky_B 485 YVAFSTCVIKV 495 (565)
T ss_dssp EEECSSCEEEE
T ss_pred EEEecCeEEEe
Confidence 99888876665
No 387
>3dgp_A RNA polymerase II transcription factor B subunit; protein-protein complex, beta-alpha-beta spilt, heterodimer, damage, DNA excision; 1.80A {Saccharomyces cerevisiae}
Probab=22.67 E-value=8 Score=22.02 Aligned_cols=55 Identities=13% Similarity=0.030 Sum_probs=19.1
Q ss_pred eEEEeecccccccCCeeeeee-cccccceeecCCCccceeeeeECCCCceEEEeec
Q psy6859 205 ILEYWSGYKQEFKFPKCVHFE-SKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISM 259 (261)
Q Consensus 205 ~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 259 (261)
.|++|.++.+.....+..-++ ..+......+..+...+..+.|..+.+.++..+.
T Consensus 7 QIrLWe~ErnRl~~~~g~Ly~~F~s~~efe~~~~yA~e~gvLlW~~~~kr~~~V~~ 62 (80)
T 3dgp_A 7 QIRLWQLELDRVITYEGSLYSDFETSQEYNLLSKYAQDIGVLLWKDDKKKKFFISK 62 (80)
T ss_dssp -------CGGGCEEEEEEEEECCSCHHHHHHHHHHHHHTTCEEEEETTTTEEEEEG
T ss_pred HHHHHHHhhCceeccceEEEecCCCHHHHHHHHHHHHHcCeEEEecCCccEEEEec
Confidence 488998876554433222221 1111111111223334455667665555444443
No 388
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=22.04 E-value=1.3e+02 Score=17.88 Aligned_cols=23 Identities=13% Similarity=0.122 Sum_probs=17.6
Q ss_pred CCeEEEEEcCCCceeeEEeecCC
Q psy6859 113 SSRVHIYDCKGNDMINMIKLDFT 135 (261)
Q Consensus 113 d~~i~i~d~~~~~~~~~~~~~~~ 135 (261)
.-.|.+||+.++....++.....
T Consensus 16 ~E~V~IvNvnNG~RfeTYvI~Ge 38 (97)
T 1uhe_A 16 GMKVEIVDVNNGERFSTYVILGK 38 (97)
T ss_dssp TCEEEEEETTTCCEEEEECEEEC
T ss_pred CCEEEEEECCCCceEEEEEEeec
Confidence 46799999999988877655443
No 389
>1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10
Probab=21.99 E-value=89 Score=21.14 Aligned_cols=39 Identities=10% Similarity=0.207 Sum_probs=26.9
Q ss_pred cccCeEEEEEcCCCC-EEEEEcCCCeEEEeecccccccCC
Q psy6859 181 HTKPVVLIKFNPIYQ-VVVSVDKAGILEYWSGYKQEFKFP 219 (261)
Q Consensus 181 ~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~ 219 (261)
....+.++.|...+. -|++...++++.+||..-++|..+
T Consensus 117 g~~hllsl~f~~g~aHaia~S~~g~~~tlFDPN~GEF~v~ 156 (188)
T 1ukf_A 117 GRKHLLSLRFANVQGHAIACSCEGSQFKLFDPNLGEFQSS 156 (188)
T ss_dssp TCEEEEEEEETTTEEEEEEEEEETTEEEEEETTTEEEEEE
T ss_pred CCceEEEEEecCCCceeEEeccCCCeEEEeCCCCceeecc
Confidence 455566677765433 566667899999999987766554
No 390
>3nvn_B Plexin-C1; beta-propeller, signaling, viral protein-signaling protein C; HET: NDG NAG; 2.26A {Homo sapiens} PDB: 3nvq_B*
Probab=20.33 E-value=3.3e+02 Score=21.74 Aligned_cols=69 Identities=9% Similarity=-0.075 Sum_probs=40.2
Q ss_pred EEEEEEeCCCCceEEEEecCCCeEEEEEccCCCc-----cceeeccCcccCeE-EEEEcC-CCCEEEEEcCCCeEEEe
Q psy6859 139 VECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGT-----PLHVLDRLHTKPVV-LIKFNP-IYQVVVSVDKAGILEYW 209 (261)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~-----~~~~~~~~~~~~v~-~~~~~~-~~~~l~~~~~dg~i~iw 209 (261)
+++++..-...+.++.-|+++|.|.---+..... .+..+ ..+.+|. .+.++| ++.+|+.++..+.+++.
T Consensus 342 LTsVav~vv~~~TVlFLGTd~G~L~KVvv~~~~~~~~~~~~~ei--~ee~~V~~~L~ldp~~~~~LyV~s~~~V~qVP 417 (476)
T 3nvn_B 342 LTSVYGTVVMNRTVLFLGTGDGQLLKVILGENLTSNCPEVIYEI--KEETPVFYKLVPDPVKNIYIYLTAGKEVRRIR 417 (476)
T ss_dssp EEEEEEEESSSSEEEEEEETTSEEEEEECCTTSCCCCCEEEEEC--TTCCCBCSCCEECSSCTTEEEEEETTEEEEEE
T ss_pred CceEEEEEeCCeEEEEEECCCceEEEEEecCCCCccceeEEEee--cCCCccccccccCccccceEEEecCcEEEEEE
Confidence 4555554444456777888899876333221221 11122 2344565 678888 56788888888766655
Done!