RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6859
(261 letters)
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 50.6 bits (119), Expect = 6e-08
Identities = 24/262 (9%), Positives = 64/262 (24%), Gaps = 4/262 (1%)
Query: 2 HRSPITHVVVTKT-DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTL 60
PI+ K + N+ + ++K V + H G + + +
Sbjct: 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65
Query: 61 LCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYD 120
+ T +D+ V+ + + + C+ + + A S + ++
Sbjct: 66 IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125
Query: 121 CKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRL 180
+ + + TV + + +++ AA S I+
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD--FKCRIFSAYIKEVEERPAPTP 183
Query: 181 HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT 240
+ + V ++T
Sbjct: 184 WGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET 243
Query: 241 YP-SGLSFSPDGNKFVTISMDR 261
P ++F + +
Sbjct: 244 LPLLAVTFITESSLVAAGHDCF 265
Score = 26.0 bits (55), Expect = 5.5
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 5/33 (15%)
Query: 2 HRSPITHVVV-----TKTDFVITASNDGHIKFW 29
H++ ++ + V K T DG + W
Sbjct: 324 HKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIW 356
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 46.3 bits (108), Expect = 1e-06
Identities = 31/290 (10%), Positives = 64/290 (22%), Gaps = 39/290 (13%)
Query: 2 HRSPITHVVVTKT-DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTL 60
H + I + +++AS DG + W V + + +G
Sbjct: 54 HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTT--NKVHAIPLRSSWVMTCAYAPSGNY 111
Query: 61 LCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYD 120
+ D ++++ + + + T S D++
Sbjct: 112 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDI 171
Query: 121 CKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRL 180
G +++ VS + ++D + G
Sbjct: 172 ETGQQTTTFTGHTGDVMSLSLAPD-----TRLFVSGACDASAKLWDVR-EGMCRQTF-TG 224
Query: 181 HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDT---------- 230
H + I F P + + + T
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 284
Query: 231 -------------DLFEFAKNKTYP------SGLSFSPDGNKFVTISMDR 261
D + + S L + DG T S D
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS 334
Score = 43.6 bits (101), Expect = 1e-05
Identities = 20/120 (16%), Positives = 44/120 (36%), Gaps = 5/120 (4%)
Query: 2 HRSPITHVVVTKT-DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTL 60
H S I + + T S+D + + + + + + I S+ + +G L
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 284
Query: 61 LCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYD 120
L D V+D + D ++ ++ + G A+ T + S + I++
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGS----WDSFLKIWN 340
Score = 40.5 bits (93), Expect = 1e-04
Identities = 26/162 (16%), Positives = 50/162 (30%), Gaps = 8/162 (4%)
Query: 49 IHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAV 108
+ S+ + L + A D + K++DV + + C G+A A
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF--ATG 244
Query: 109 SDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCK 168
SD + R+ M +T G + ++ D + +++D
Sbjct: 245 SDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL----LAGYDDFNCNVWDAL 300
Query: 169 GNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWS 210
VL H V + V + L+ W+
Sbjct: 301 -KADRAGVL-AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 45.1 bits (105), Expect = 3e-06
Identities = 12/74 (16%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 2 HRSPITHVVVTKT-DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTL 60
H + + V+ F+++ ++D ++ W + + +K +H + S+ +
Sbjct: 246 HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK--RCMKTLNAHEHFVTSLDFHKTAPY 303
Query: 61 LCTVASDKAMKVFD 74
+ T + D+ +KV++
Sbjct: 304 VVTGSVDQTVKVWE 317
Score = 44.3 bits (103), Expect = 6e-06
Identities = 46/266 (17%), Positives = 92/266 (34%), Gaps = 18/266 (6%)
Query: 2 HRSPITHVVVTKT-DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTL 60
HRSP+T V+ +++AS D IK W + +F + + H + I +++G L
Sbjct: 16 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG--DFERTLKGHTDSVQDISFDHSGKL 73
Query: 61 LCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYD 120
L + ++D +K++D F+ I + ++ I GD I VS + +++
Sbjct: 74 LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHI----VSASRDKTIKMWE 129
Query: 121 CKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRL 180
+ + + + + G I + S+ + R
Sbjct: 130 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASC------SNDQTVRVWVVATKECKAELRE 183
Query: 181 HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFP-----KCVHFESKLDTDLFEF 235
H V I + P + G SG F ++ L
Sbjct: 184 HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL 243
Query: 236 AKNKTYPSGLSFSPDGNKFVTISMDR 261
+ + G+ F G ++ + D+
Sbjct: 244 VGHDNWVRGVLFHSGGKFILSCADDK 269
Score = 41.7 bits (96), Expect = 4e-05
Identities = 40/261 (15%), Positives = 86/261 (32%), Gaps = 49/261 (18%)
Query: 1 MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTL 60
+ + ++ D +++AS D IK W+ Q VK F H + + N +GTL
Sbjct: 100 HDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT--GYCVKTFTGHREWVRMVRPNQDGTL 157
Query: 61 LCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYD 120
+ + ++D+ ++V+ V + ++ + V
Sbjct: 158 IASCSNDQTVRVWVVATKECKAELR--------------------------EHRHVVECI 191
Query: 121 CKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRL 180
+ + T + G + + + + ++D G L L
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGS----RDKTIKMWDVS-TGMCLMTLVG- 245
Query: 181 HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT 240
H V + F+ + ++S L W +K +C+ ++
Sbjct: 246 HDNWVRGVLFHSGGKFILSCADDKTLRVWD-----YKNKRCMK----------TLNAHEH 290
Query: 241 YPSGLSFSPDGNKFVTISMDR 261
+ + L F VT S+D+
Sbjct: 291 FVTSLDFHKTAPYVVTGSVDQ 311
Score = 33.9 bits (76), Expect = 0.015
Identities = 23/225 (10%), Positives = 58/225 (25%), Gaps = 15/225 (6%)
Query: 42 FRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGD 101
H + + + +++ + + D +KV+D D +K +
Sbjct: 13 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD---- 68
Query: 102 AIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSH 161
+ + S+ + I + + V + + + + S +
Sbjct: 69 --HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIK 126
Query: 162 VHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKC 221
+ H + V +++ N ++ S + W +E K
Sbjct: 127 MWEVQTGYCVKTFTG----HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR 182
Query: 222 VHFESKLDTDLFE-----FAKNKTYPSGLSFSPDGNKFVTISMDR 261
H T G ++ S D+
Sbjct: 183 EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 227
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 42.5 bits (98), Expect = 2e-05
Identities = 21/270 (7%), Positives = 58/270 (21%), Gaps = 31/270 (11%)
Query: 2 HRSPITHVVVTKTDFVITASNDGHIKFWK----KQEEGIEFVKHFRSHLGVIHSICT--- 54
H + I V F ++ S DG++K W E + H +H +
Sbjct: 13 HDADIFSVSACN-SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQA 71
Query: 55 ----NYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSD 110
+ L+ T + + + + D + + L + S+
Sbjct: 72 IERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN 131
Query: 111 QDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGN 170
+ + K +D+ +S +
Sbjct: 132 DRLLSHRLVATDVKGTTYIWKFH-------------------PFADESNSLTLNWSPTLE 172
Query: 171 GTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDT 230
++ + + + + + + + H
Sbjct: 173 LQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSN 232
Query: 231 DLFEFAKNKTYPSGLSFSPDGNKFVTISMD 260
+ + + +
Sbjct: 233 SIRSVKFSPQGSLLAIAHDSNSFGCITLYE 262
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 37.6 bits (85), Expect = 8e-04
Identities = 13/76 (17%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 1 MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTL 60
+ + D V T S D +I + + + +K +H ++++ TL
Sbjct: 214 KPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM-KIIKALNAHKDGVNNLLWETPSTL 272
Query: 61 LCTVASDKAMKVFDVI 76
+ + +D +K ++V+
Sbjct: 273 V-SSGADACIKRWNVV 287
Score = 30.7 bits (67), Expect = 0.17
Identities = 14/89 (15%), Positives = 22/89 (24%), Gaps = 10/89 (11%)
Query: 2 HRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLL 61
H IT + V +I+ S DG I W + H +I S+ +
Sbjct: 12 HNKGITALTVNP---LISGSYDGRIMEW-------SSSSMHQDHSNLIVSLDNSKAQEYS 61
Query: 62 CTVASDKAMKVFDVINFDMINMIKLDFTP 90
D +
Sbjct: 62 SISWDDTLKVNGITKHEFGSQPKVASANN 90
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 37.6 bits (85), Expect = 0.001
Identities = 15/126 (11%), Positives = 41/126 (32%), Gaps = 5/126 (3%)
Query: 2 HRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLL 61
H + + + + ++VIT ++D I+ + + +F+ H G + ++ + G L+
Sbjct: 11 HMTSVITCLQFEDNYVITGADDKMIRVYDSINK--KFLLQLSGHDGGVWALKYAHGGILV 68
Query: 62 CTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDC 121
+ T ++ + Y D +H++
Sbjct: 69 SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN---TLHVWKL 125
Query: 122 KGNDMI 127
+
Sbjct: 126 PKESSV 131
Score = 27.2 bits (58), Expect = 2.0
Identities = 14/97 (14%), Positives = 37/97 (38%), Gaps = 2/97 (2%)
Query: 24 GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINM 83
+ + ++ + F H + +I T Y + S+ ++++ + +++
Sbjct: 259 AAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHA 318
Query: 84 IKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYD 120
L + +++ G + AAV S + I D
Sbjct: 319 NILKDAD-QIWSVNFKGKTL-VAAVEKDGQSFLEILD 353
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 36.4 bits (82), Expect = 0.002
Identities = 28/264 (10%), Positives = 66/264 (25%), Gaps = 4/264 (1%)
Query: 2 HRSPITHVVVTKT-DFVITASNDGHIKFWKKQEEGIEF-VKHFRSHLGVIHSICTNYNGT 59
+ I+ + + + ++ S DG + +K + + + + N
Sbjct: 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTD 69
Query: 60 LLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIY 119
L V + + + + + C A S V
Sbjct: 70 LQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDP 129
Query: 120 DCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPL--HVL 177
G+ +I + L+ V+ + D + + ++S V +
Sbjct: 130 RNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEE 189
Query: 178 DRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK 237
L + + + G + Q + F + +
Sbjct: 190 SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTN 249
Query: 238 NKTYPSGLSFSPDGNKFVTISMDR 261
+ + FSP T D
Sbjct: 250 LAYPVNSIEFSPRHKFLYTAGSDG 273
Score = 27.1 bits (58), Expect = 2.0
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 16 FVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDV 75
F+ TA +DG I W Q + +K+F + + +LC SD K
Sbjct: 265 FLYTAGSDGIISCWNLQTR--KKIKNFAKFNEDS-VVKIACSDNILCLATSDDTFKTNAA 321
Query: 76 INFDM 80
I+ +
Sbjct: 322 IDQTI 326
Score = 25.2 bits (53), Expect = 9.4
Identities = 12/93 (12%), Positives = 30/93 (32%), Gaps = 13/93 (13%)
Query: 39 VKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHY 98
V+ ++ I I + +LL + D ++ V+ D V+ +
Sbjct: 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKF-----------DIQAKNVDLLQS 52
Query: 99 LG--DAIPTAAVSDQDSSRVHIYDCKGNDMINM 129
L + D ++++ +G +
Sbjct: 53 LRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85
>gi|206564140|ref|YP_002234903.1|(51-382:385) putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|198040180|emb|CAR56163.1| putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|194561004|ref|YP_002096029.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|124876520|gb|EAY66510.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|170737581|ref|YP_001778841.1| amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|169819769|gb|ACA94351.1| Amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|78061451|ref|YP_371359.1| amine dehydrogenase
[Burkholderia sp. 383] gi|77969336|gb|ABB10715.1|
Amine dehydrogenase [Burkholderia sp. 383]
gi|107025662|ref|YP_623173.1| amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116693156|ref|YP_838689.1| amine dehydrogenase
[Burkholderia cenocepacia HI2424]
gi|105895036|gb|ABF78200.1| Amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116651156|gb|ABK11796.1| Amine dehydrogenase
[Burkholderia cenocepacia HI2424] E=8e-14 s/c=0.25
id=29% cov=82%
Length = 321
Score = 36.5 bits (83), Expect = 0.002
Identities = 24/268 (8%), Positives = 55/268 (20%), Gaps = 19/268 (7%)
Query: 9 VVVTKTDFVITASNDGHIKFW----KKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTV 64
V T + ++ I H+ ++ + +G L
Sbjct: 33 VATTYFSRGSHGTRTDVVEIIDNTTLDHAGEIVIPAKHAQHVPSPYNTAFSADGKRLYVA 92
Query: 65 ASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGN 124
A V + + ++D T C+ + + +
Sbjct: 93 NITPAASVTVIDAVSKKMLSEID----TAACVLAYPAGDDRFTALCESGKALTVTLDANG 148
Query: 125 DMINMIKLDFTPLTVECIHYL-GDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTK 183
D + ++ + +V D G+ L T
Sbjct: 149 KEAKRTMSDAFIDVDKDPAFVNASRYKGDYLFTTYGGNVRSADFSGDKPAFGKPWSLLTD 208
Query: 184 PVVLIKFNPIYQVVVSVDKAGILEYWS------GYKQEFKFPKCVHFESKLDTDLFEFAK 237
+ P +V Y G ++ V+
Sbjct: 209 AERAEGWRPGGMQQTAVQAKQNRYYVLMHKGTDGSHKDPGTQVWVYDLKSKQRVARWDLA 268
Query: 238 NKT--YPSGLSFSPDGNK--FVTISMDR 261
+ + S D + +
Sbjct: 269 QQKVEPLVSIQVSEDDKPLFYGLTATSD 296
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 35.9 bits (81), Expect = 0.003
Identities = 24/263 (9%), Positives = 51/263 (19%), Gaps = 28/263 (10%)
Query: 2 HRSPITHVVVTKTDFVITASNDGHIKFW---KKQEEGIEFVKHFRSHLGVIHSICTNYNG 58
H + V ++ + G +K W + + I S +G
Sbjct: 50 HGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG 109
Query: 59 TLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHI 118
L + ++D+ + A D
Sbjct: 110 CTLIVGGEASTLSIWDLAAPTPRIKAE---------LTSSAPACYALAISPDSKVCFSCC 160
Query: 119 YDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD 178
D + I + +
Sbjct: 161 SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ 220
Query: 179 RLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKN 238
T + + + P + V D ++ +
Sbjct: 221 HDFTSQIFSLGYCP----------------TGEWLAVGMESSNVEVLHVNKPDKYQLHLH 264
Query: 239 KTYPSGLSFSPDGNKFVTISMDR 261
++ L F+ G FV+ D
Sbjct: 265 ESCVLSLKFAYCGKWFVSTGKDN 287
Score = 29.0 bits (63), Expect = 0.50
Identities = 5/30 (16%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 2 HRSPITHVVVTKTD-FVITASNDGHIKFWK 30
S + ++ D +++T S D ++
Sbjct: 305 ESSSVLSCDISVDDKYIVTGSGDKKATVYE 334
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 35.7 bits (80), Expect = 0.003
Identities = 10/75 (13%), Positives = 21/75 (28%)
Query: 1 MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTL 60
+ T S D + W + + +H + N T
Sbjct: 223 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT 282
Query: 61 LCTVASDKAMKVFDV 75
+ + D +K ++V
Sbjct: 283 IVSAGQDSNIKFWNV 297
Score = 31.1 bits (68), Expect = 0.11
Identities = 29/281 (10%), Positives = 55/281 (19%), Gaps = 22/281 (7%)
Query: 2 HRSPITHVVVTKT-DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTL 60
H IT + + + +A +GHI W GI H +I I T G L
Sbjct: 11 HNKAITALSSSADGKTLFSADAEGHINSW-DISTGISNRVFPDVHATMITGIKTTSKGDL 69
Query: 61 LCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYD 120
D V + + + + D A + +
Sbjct: 70 FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK 129
Query: 121 CKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRL 180
+ + + G +S + V
Sbjct: 130 LTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSN 189
Query: 181 HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHF---------------- 224
+ +V + + + S K
Sbjct: 190 NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVI 249
Query: 225 ----ESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR 261
D + + + V+ D
Sbjct: 250 VWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDS 290
Score = 27.3 bits (58), Expect = 2.2
Identities = 5/37 (13%), Positives = 17/37 (45%)
Query: 39 VKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDV 75
+ H I ++ ++ +G L + ++ + +D+
Sbjct: 5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDI 41
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 368
Score = 35.7 bits (81), Expect = 0.003
Identities = 25/251 (9%), Positives = 53/251 (21%), Gaps = 16/251 (6%)
Query: 17 VITASNDGHIKFW-----KKQEEGIEFVKHFRSHLGVIHSIC-TNYNGTLLCTVASDKAM 70
+++ + + S +H I + LL + A
Sbjct: 89 SAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148
Query: 71 KVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMI 130
V D + C H A T + +S ++
Sbjct: 149 AGLSV------PGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIV 202
Query: 131 KLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKF 190
T P V +S + D G + + F
Sbjct: 203 GAQCTGAQNCSSQAAQANYPGMLVWA-VASSILQGDIPAAGATMKAAIDGNESGRKADNF 261
Query: 191 NPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT---YPSGLSF 247
+V+ K + S + + + + + +
Sbjct: 262 RSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIA 321
Query: 248 SPDGNKFVTIS 258
+ DG +
Sbjct: 322 AQDGASDNYAN 332
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 426
Score = 35.7 bits (81), Expect = 0.005
Identities = 33/256 (12%), Positives = 69/256 (26%), Gaps = 10/256 (3%)
Query: 6 ITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVA 65
+ + F +T + G I + I VK + V H + +G L +
Sbjct: 24 QLNDLDLPNLFSVTLRDAGQIALVDGDSKKI--VKVIDTGYAV-HISRMSASGRYLLVIG 80
Query: 66 SDKAMKVFDVI--NFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKG 123
D + + D+ + IK+ +VE + G + I D +
Sbjct: 81 RDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET 140
Query: 124 NDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTK 183
+ ++ + + H A + I + K G L V
Sbjct: 141 LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHP---EFIVNVKETGKVLLV--NYKDI 195
Query: 184 PVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPS 243
+ + + Y+ + + + + L + K
Sbjct: 196 DNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGR 255
Query: 244 GLSFSPDGNKFVTISM 259
G +F V +
Sbjct: 256 GANFVHPKYGPVWSTS 271
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 34.8 bits (79), Expect = 0.009
Identities = 25/209 (11%), Positives = 60/209 (28%), Gaps = 14/209 (6%)
Query: 16 FVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDV 75
F +T + G I E + V H + +G L + D + + D+
Sbjct: 34 FSVTLRDAGQIALIDG--STYEIKTVLDTGYAV-HISRLSASGRYLFVIGRDGKVNMIDL 90
Query: 76 INFD--MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLD 133
+ + IK+ ++E G A + I D + + +
Sbjct: 91 WMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTR 150
Query: 134 FTPLTVECIHYLGDAI--------PTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPV 185
+ H P V+ +++ + + D + L + + +
Sbjct: 151 GMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYT-DLNNLKTTEISAERFL 209
Query: 186 VLIKFNPIYQVVVSVDKAGILEYWSGYKQ 214
+ ++ ++ A K+
Sbjct: 210 HDGGLDGSHRYFITAANARNKLVVIDTKE 238
Score = 25.9 bits (56), Expect = 6.6
Identities = 4/20 (20%), Positives = 4/20 (20%)
Query: 241 YPSGLSFSPDGNKFVTISMD 260
S G I D
Sbjct: 63 AVHISRLSASGRYLFVIGRD 82
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 34.4 bits (77), Expect = 0.012
Identities = 28/247 (11%), Positives = 68/247 (27%), Gaps = 5/247 (2%)
Query: 18 ITASNDGHIKFWKKQEEGIEFVK--HFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDV 75
+ + + + V+ H V+ + + +G L T +K +V+ V
Sbjct: 32 LKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLAT-GCNKTTQVYRV 90
Query: 76 INFDMINMIKLDFTPL-TVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDF 134
+ ++ + D E ++ + S + G + + D
Sbjct: 91 SDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDI 150
Query: 135 TPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIY 194
+ I + + + + + + +
Sbjct: 151 ENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTV 210
Query: 195 QVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKF 254
V K + + E +LD++ +K + F+ DG
Sbjct: 211 AVSPGDGKYIAAGSLDRAVRVWDSETGFLVE-RLDSENESGTGHKDSVYSVVFTRDGQSV 269
Query: 255 VTISMDR 261
V+ S+DR
Sbjct: 270 VSGSLDR 276
Score = 30.2 bits (66), Expect = 0.24
Identities = 39/273 (14%), Positives = 83/273 (30%), Gaps = 27/273 (9%)
Query: 2 HRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLL 61
I V + D A+ E + V + H I+S+ +G L
Sbjct: 120 SDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178
Query: 62 CTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDC 121
+ + D+ ++++D+ + ++ TV G I + V ++D
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGS----LDRAVRVWDS 234
Query: 122 KGNDMINMIKLDFTPLT-----VECIHYL--------GDAIPTAAVSDQDSSHVHIYDCK 168
+ ++ + + T V + + G + + + +++
Sbjct: 235 ETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT 294
Query: 169 GNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKL 228
N V H V+ + + ++S K + +W H S +
Sbjct: 295 PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVI 354
Query: 229 DTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR 261
+G S P+ N F T S D
Sbjct: 355 SVA---------VANGSSLGPEYNVFATGSGDC 378
Score = 27.5 bits (59), Expect = 1.8
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 7/36 (19%)
Query: 2 HRSPITHVVVTKT-------DFVITASNDGHIKFWK 30
HR+ + V V + T S D + WK
Sbjct: 349 HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 33.7 bits (75), Expect = 0.016
Identities = 7/76 (9%), Positives = 22/76 (28%), Gaps = 6/76 (7%)
Query: 16 FVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDV 75
+ A G + + + + + + + + + D + F +
Sbjct: 290 YYQGAPEKGVLLKYDVKT------RKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPL 343
Query: 76 INFDMINMIKLDFTPL 91
+ ++ D PL
Sbjct: 344 EKPEDERTVETDKRPL 359
Score = 27.1 bits (58), Expect = 2.4
Identities = 11/162 (6%), Positives = 35/162 (21%), Gaps = 25/162 (15%)
Query: 106 AAVSDQDSSRV---HIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHV 162
+S + + + + + P + + ++ + A +
Sbjct: 194 YYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMY 253
Query: 163 HIYDCKGNGTPLHVLDRLHTKPVVLI---KFNPIYQVVVSVDKAGILEYWSGYKQEFKFP 219
+ + +++ + G+L +
Sbjct: 254 KRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKY---------- 303
Query: 220 KCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR 261
D + + K + L S D + D
Sbjct: 304 ---------DVKTRKVTEVKNNLTDLRLSADRKTVMVRKDDG 336
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 32.5 bits (72), Expect = 0.040
Identities = 10/80 (12%), Positives = 29/80 (36%), Gaps = 9/80 (11%)
Query: 2 HRSPITHVVVTKTDFVITASNDGHIKFW-------KKQEEGIEFVKHFRSHLGVIHSICT 54
+ + +++ + DG IK W + G ++ H G + +
Sbjct: 216 GHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQ- 274
Query: 55 NYNGTLLCTVASDKAMKVFD 74
++ + + + D + ++D
Sbjct: 275 -FDEFQIVSSSHDDTILIWD 293
Score = 27.1 bits (58), Expect = 2.2
Identities = 24/189 (12%), Positives = 60/189 (31%), Gaps = 22/189 (11%)
Query: 22 NDGHIKFW-KKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDM 80
D I W I + H ++ + + + + + D+ +KV++ +
Sbjct: 113 KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKY--IVSASGDRTIKVWNTSTCEF 170
Query: 81 INMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVE 140
+ L+ + C+ Y + + + + ++D + + +++ E
Sbjct: 171 VR--TLNGHKRGIACLQYRDRLVVSG----SSDNTIRLWDIECGACLRVLE------GHE 218
Query: 141 CIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRL-------HTKPVVLIKFNPI 193
+ VS + ++D P L H+ V ++F+
Sbjct: 219 ELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF 278
Query: 194 YQVVVSVDK 202
V S D
Sbjct: 279 QIVSSSHDD 287
Score = 25.6 bits (54), Expect = 6.8
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 15 DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYN 57
+++ D IK W K E + H G + + +
Sbjct: 26 QKIVSGLRDNTIKIWDKNTL--ECKRILTGHTGSVLCLQYDER 66
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 32.2 bits (71), Expect = 0.053
Identities = 22/261 (8%), Positives = 57/261 (21%), Gaps = 15/261 (5%)
Query: 2 HRSPITHVVVTKT-DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTL 60
H T + + + + G+++ W + G + I +
Sbjct: 57 HSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKR 116
Query: 61 LCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYD 120
+ V + + + L + + + D++
Sbjct: 117 IAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEG 176
Query: 121 CKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRL 180
+ +V T + G + +
Sbjct: 177 PPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVA 236
Query: 181 HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT 240
H+ V + ++P + S ++ W K + +
Sbjct: 237 HSGSVFGLTWSPDGTKIASASADKTIKIW-----NVATLKVEK---TIPVG------TRI 282
Query: 241 YPSGLSFSPDGNKFVTISMDR 261
L V+IS +
Sbjct: 283 EDQQLGIIWTKQALVSISANG 303
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 31.7 bits (70), Expect = 0.085
Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 4/83 (4%)
Query: 1 MHRSPITHVVVTKTDFVITASNDGHIKFW---KKQEEGIEFVKHFRSHLGVIHSICTNYN 57
+ +FVIT+S+DG +K W + GV+ I +
Sbjct: 257 NKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT 316
Query: 58 GTLLCTVASDKAMKVF-DVINFD 79
+ + + + V++FD
Sbjct: 317 KLVCAVGSRNGTEETKLLVLDFD 339
Score = 31.3 bits (69), Expect = 0.096
Identities = 31/230 (13%), Positives = 72/230 (31%), Gaps = 18/230 (7%)
Query: 2 HRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLL 61
H + + + +++ S+D +K W + ++ H G + S N +
Sbjct: 15 HDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTG--KCLRTLVGHTGGVWSSQMRDNIIIS 72
Query: 62 CTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDC 121
+ + + TV C+H + + + + ++D
Sbjct: 73 GSTDRTLKVWNAETGECIHTLY----GHTSTVRCMHLHEKRVVSGSRDAT----LRVWDI 124
Query: 122 KGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLH 181
+ ++++ + VS V ++D + T LH L H
Sbjct: 125 ETGQCLHVLMGHVAAVRCVQYDG------RRVVSGAYDFMVKVWDPETE-TCLHTLQG-H 176
Query: 182 TKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTD 231
T V ++F+ I+ V S+D + + S ++
Sbjct: 177 TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK 226
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 31.0 bits (68), Expect = 0.12
Identities = 8/77 (10%), Positives = 26/77 (33%), Gaps = 3/77 (3%)
Query: 1 MHRSPITHVVVTKTDFVITASNDGHIKFW--KKQEEGIEFVKHFRSHLGVIHSICTNYNG 58
+ I + + T D I+ W + ++ + + NG
Sbjct: 250 PVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNG 309
Query: 59 TLLCTVASDKAMKVFDV 75
++ +++ D + +++
Sbjct: 310 RII-SLSLDGTLNFYEL 325
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus
[TaxId: 1280]}
Length = 319
Score = 30.1 bits (66), Expect = 0.22
Identities = 20/112 (17%), Positives = 35/112 (31%), Gaps = 12/112 (10%)
Query: 150 PTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYW 209
PT S + +S V I L + +P + I + ++ D+ G L +
Sbjct: 4 PTLFYSGKSNSAVPIIS-------ESELQTITAEPWLEISKKGLQLEGLNFDRQGQL-FL 55
Query: 210 SGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR 261
+ + F +K P+ + DG FV D
Sbjct: 56 L----DVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDF 103
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 28.6 bits (62), Expect = 0.82
Identities = 8/86 (9%), Positives = 24/86 (27%), Gaps = 3/86 (3%)
Query: 1 MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTL 60
+ + D + + ++ + + + + + G
Sbjct: 249 DLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRK---LIKAANLDHTYYCVAFDKKGDK 305
Query: 61 LCTVASDKAMKVFDVINFDMINMIKL 86
L + + VF+ + + IKL
Sbjct: 306 LYLGGTFNDLAVFNPDTLEKVKNIKL 331
Score = 27.8 bits (60), Expect = 1.4
Identities = 25/257 (9%), Positives = 58/257 (22%), Gaps = 14/257 (5%)
Query: 18 ITASNDGHIKFW----KKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVF 73
+ ++ G I K ++S + +G + +
Sbjct: 56 VLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLND 115
Query: 74 DVINFDMINMI--KLDFTPLTVECIHYLGDAIPTAAVSD-----QDSSRVHIYDCKGNDM 126
+ + D + + +D ++ D K
Sbjct: 116 HYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKY 175
Query: 127 INMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVV 186
+ L + P + + S I K + D L+ V
Sbjct: 176 TVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV 235
Query: 187 LIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKN---KTYPS 243
+K + + K + ++ +K D + K
Sbjct: 236 DLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYY 295
Query: 244 GLSFSPDGNKFVTISMD 260
++F G+K
Sbjct: 296 CVAFDKKGDKLYLGGTF 312
>d1d02a_ c.52.1.8 (A:) Restriction endonuclease MunI {Mycoplasma,
unidentified species [TaxId: 2093]}
Length = 197
Score = 27.6 bits (61), Expect = 1.3
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 23 DGHIKFWKKQEEGIEFVKHFRSHL 46
+ W+ E G + V+HF L
Sbjct: 169 QDNYFMWRPNESGEKLVQHFNEKL 192
>d1abrb1 b.42.2.1 (B:1-140) Plant cytotoxin B-chain (lectin) {Abrus
precatorius [TaxId: 3816]}
Length = 140
Score = 27.2 bits (59), Expect = 1.3
Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 109 SDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCK 168
+ +R+ ++ CK N + +T + + I G + T + S+V IYDC
Sbjct: 32 GYHNGNRIIMWKCKDRLEENQL---WTLKSDKTIRSNGKCLTTYGYA--PGSYVMIYDCT 86
Query: 169 GNGTPLH 175
Sbjct: 87 SAVAEAT 93
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 27.8 bits (60), Expect = 1.4
Identities = 24/253 (9%), Positives = 58/253 (22%), Gaps = 12/253 (4%)
Query: 18 ITASNDGHIKFW---KKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFD 74
T + + + G + + + + +G L S +++
Sbjct: 50 ATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTH 109
Query: 75 VINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVS-DQDSSRVHIYDCKGNDMINMIKLD 133
+ D L+ I A + D D D ++
Sbjct: 110 F-EVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVE 168
Query: 134 FTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYD---CKGNGTPLHVLDRLHTKPVVLIKF 190
P+ A + +SS V + + P + ++
Sbjct: 169 DKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET 228
Query: 191 NPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT---YPSGLSF 247
+ V + + + + + D + K ++
Sbjct: 229 GEMAMREVRIMDVFYF-STAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNV 287
Query: 248 SPDGNKFVTISMD 260
S DG+
Sbjct: 288 STDGSTVWLGGAL 300
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 355
Score = 27.4 bits (59), Expect = 1.9
Identities = 27/265 (10%), Positives = 57/265 (21%), Gaps = 24/265 (9%)
Query: 9 VVVTKTDFVITASNDGHIKFWK------KQEEGIEFVKHFRSHLGVIHSICTNYNGTLLC 62
T + +++ + + + F + T TLL
Sbjct: 63 HASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLF 122
Query: 63 TVAS-DKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAI----PTAAVSDQDSSRVH 117
S A+ V D+ M+ + A V+
Sbjct: 123 YQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPE 182
Query: 118 IYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVL 177
I + + ++ V + +H D
Sbjct: 183 ITHTEVFHPEDEFLINHPA---------YSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPA 233
Query: 178 DRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKL-DTDLFEFA 236
T+ + P V+ +A Y +++ K + D E
Sbjct: 234 VEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL 293
Query: 237 KN---KTYPSGLSFSPDGNKFVTIS 258
++ S D +
Sbjct: 294 AKFEMGHEIDSINVSQDEKPLLYAL 318
>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase
{Acinetobacter calcoaceticus [TaxId: 471]}
Length = 450
Score = 25.4 bits (54), Expect = 7.9
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 235 FAKNKTYPSGLSFSPDGNKFVT 256
N P L + PD ++T
Sbjct: 22 ILSNLNKPHALLWGPDNQIWLT 43
>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 340
Score = 25.5 bits (55), Expect = 8.1
Identities = 14/103 (13%), Positives = 28/103 (27%), Gaps = 3/103 (2%)
Query: 155 SDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVL--IKFNPIYQVVVSVDKAGILEYWSGY 212
S+ + + LH+ H + I + D I Y +
Sbjct: 120 PGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSW 179
Query: 213 KQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFV 255
+ + A+ + +G++ SPDG
Sbjct: 180 EMHLGLAWSFVTYYSPNDV-RVVAEGFDFANGINISPDGKYVY 221
>d2bv3a4 d.58.11.1 (A:404-478) Elongation factor G (EF-G) {Thermus
thermophilus [TaxId: 274]}
Length = 75
Score = 23.6 bits (51), Expect = 8.7
Identities = 10/44 (22%), Positives = 19/44 (43%)
Query: 140 ECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTK 183
+ + L + PT +VS + I G + ++DRL +
Sbjct: 23 QALARLAEESPTFSVSTHPETGSTIISGMGELSLEIIVDRLKRE 66
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.138 0.427
Gapped
Lambda K H
0.267 0.0415 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,020,875
Number of extensions: 47323
Number of successful extensions: 274
Number of sequences better than 10.0: 1
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 83
Length of query: 261
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 177
Effective length of database: 1,254,276
Effective search space: 222006852
Effective search space used: 222006852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)