BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6861
(559 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CTZ|A Chain A, Structure Of Human Cytosolic X-Prolyl Aminopeptidase
Length = 623
Score = 197 bits (500), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 125/390 (32%), Positives = 201/390 (51%), Gaps = 14/390 (3%)
Query: 173 ESEEVHPRDERLKFLSGFSGSYGFAVVTATKAALWVTGLDELQADLELSCDWLLMKSGHP 232
+SE + P D R F+SGF GS G A++T AA+W G LQA ++ +W LMK G
Sbjct: 39 QSEYIAPCDCRRAFVSGFDGSAGTAIITEEHAAMWTDGRYFLQAAKQMDSNWTLMKMGLK 98
Query: 233 GVPTITEWLKDELGTGMRVGVDPKLIPNSQFEYLQRELNNATILLVQVVNNLIDQIWIKN 292
PT +WL L G RVGVDP +IP ++ + + L +A L+ V NL+D+IW +
Sbjct: 99 DTPTQEDWLVSVLPEGSRVGVDPLIIPTDYWKKMAKVLRSAGHHLIPVKENLVDKIWT-D 157
Query: 293 RPLYSTHDAFIIQNEIAGESYQNKFERVRRILRSVDCDALIVTALDEIAWLLNIRAWDLP 352
RP + + G S+++K +R + + +VTALDEIAWL N+R D+
Sbjct: 158 RPERPCKPLLTLGLDYTGISWKDKVADLRLKMAERNVMWFVVTALDEIAWLFNLRGSDVE 217
Query: 353 HSPFLRAYLAITESQVYLYTDEKKL-SNAVRMYLHID-SCTSPLCVRVKEYEKVWNDLRN 410
H+P +Y I + L+ D ++ + +V+ +L +D + ++V Y+ + ++L+
Sbjct: 218 HNPVFFSYAIIGLETIMLFIDGDRIDAPSVKEHLLLDLGLEAEYRIQVHPYKSILSELKA 277
Query: 411 IGLYWN---RIWLPSQIAYSAGVSKAITTLFSPDKRYAAP-SPIIEMKAQKNDVEIKGMH 466
+ + ++W+ + +Y A++ D R P +PI KA KN E +GM
Sbjct: 278 LCADLSPREKVWVSDKASY------AVSETIPKDHRCCMPYTPICIAKAVKNSAESEGMR 331
Query: 467 EAHIRDAVIFCDAMAFVEDQYFRGEDITETSVAHILDSHRTENTISRGISFESIVAYGEH 526
AHI+DAV C+ ++E + +G +TE S A + R + +SF +I + G
Sbjct: 332 RAHIKDAVALCELFNWLEKEVPKG-GVTEISAADKAEEFRRQQADFVDLSFPTISSTGPT 390
Query: 527 AALPHYTPSNATNVVVRGDAPLLVDSGGHY 556
A+ HY P TN + D L+DSG Y
Sbjct: 391 GAIIHYAPVPETNRTLSLDEVYLIDSGAQY 420
Score = 118 bits (296), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 96/167 (57%), Gaps = 11/167 (6%)
Query: 15 DGTTDVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLWKLGR 74
DGTTDV+RT+H +PT + E ++ L G I ++ AVFP + LD AR+ LW G
Sbjct: 422 DGTTDVTRTMHFETPTAYEKECFTYVLKGHIAVSAAVFPTGTKGHLLDSFARSALWDSGL 481
Query: 75 DYPHGTGHGIGAFSSVHE--CTISFVQNNTDIYSSILTKVILLLSPEPGYYKEDEFGIRL 132
DY HGTGHG+G+F +VHE C IS+ +S + ++++ EPGYY++ FGIR+
Sbjct: 482 DYLHGTGHGVGSFLNVHEGPCGISY-----KTFSDEPLEAGMIVTDEPGYYEDGAFGIRI 536
Query: 133 EDIFEVVYAAG----TDEQYLAFKPVTAVPFEPKFIDISLFGPEESE 175
E++ VV + L +P+T VP + K ID+ +E +
Sbjct: 537 ENVVLVVPVKTKYNFNNRGSLTLEPLTLVPIQTKMIDVDSLTDKECD 583
>pdb|1PV9|A Chain A, Prolidase From Pyrococcus Furiosus
pdb|1PV9|B Chain B, Prolidase From Pyrococcus Furiosus
Length = 348
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 11/120 (9%)
Query: 17 TTDVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPL--WKLGR 74
+D++RT+ +GSP +Q E Y L R A P + + +LD +AR + + G
Sbjct: 218 NSDITRTIVVGSPNEKQREIYEIVLEAQKRAVEAAKPG-MTAKELDSIAREIIKEYGYGD 276
Query: 75 DYPHGTGHGIGAFSSVHECTISFVQNNTDIYSSILTKVILLLSPEPGYYKEDEFGIRLED 134
+ H GHG+G +HE Y + K ++++ EPG Y G+R+ED
Sbjct: 277 YFIHSLGHGVGL--EIHEWP------RISQYDETVLKEGMVITIEPGIYIPKLGGVRIED 328
>pdb|2ZSG|A Chain A, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
pdb|2ZSG|B Chain B, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
Length = 359
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 13/119 (10%)
Query: 19 DVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLWK--LGRDY 76
D++R + +G P+ E E +S L R A + A + LD +AR + + G +
Sbjct: 229 DITRVVSIGEPSDEVKEVHSIVLEAQER-ALKIAKAGVTGKLLDSVAREFIREKGYGEFF 287
Query: 77 PHGTGHGIGAFSSVHEC-TISFVQNNTDIYSSILTKVILLLSPEPGYYKEDEFGIRLED 134
H GHGIG VHE ISF +N++ + +++ V EPG Y E +FGIR+E+
Sbjct: 288 GHSLGHGIGL--EVHEGPAISF-RNDSPLPENVVFTV------EPGIYLEGKFGIRIEE 337
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 24/159 (15%)
Query: 402 EKVWNDLR--NIGLYWNRIWLPSQIAYSAGVSKAITTLFSPDKRYAAPSPIIEMKAQKND 459
+K NDL+ I L R+ L + + I++ F K + +M+ K++
Sbjct: 85 KKTVNDLKIKTIALEEERVSLS--------LFRRISSAFGDRKFIGIDDEVKQMRMVKDE 136
Query: 460 VEIKGMHEAHIRDAVIFCDAMAFVED-QYFRGEDITETSVAHILD-SHRTENTISRGISF 517
EI+ + +A I AF+E Q R +TE +A +L+ + R E + G++F
Sbjct: 137 GEIEKIKQA------IEISERAFLETVQQIRA-GMTEKEIAALLEYTMRKEG--AEGVAF 187
Query: 518 ESIVAYGEHAALPHYTPSNATNVVVRGDAPLLVDSGGHY 556
++IVA G +ALPH S+ VV RGD +++D G Y
Sbjct: 188 DTIVASGCRSALPHGKASD--KVVERGDV-IVIDFGATY 223
>pdb|1WY2|A Chain A, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
pdb|1WY2|B Chain B, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
Length = 351
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 11/120 (9%)
Query: 17 TTDVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPL--WKLGR 74
+D++RT+ +GSP +Q E Y L + + P + + +LD +AR + + G
Sbjct: 221 NSDITRTIVVGSPNEKQKEIYEIVLEAQKKAVESAKPG-ITAKELDSIARNIIAEYGYGE 279
Query: 75 DYPHGTGHGIGAFSSVHECTISFVQNNTDIYSSILTKVILLLSPEPGYYKEDEFGIRLED 134
+ H GHG+G VHE Y + + ++++ EPG Y G+R+ED
Sbjct: 280 YFNHSLGHGVGL--EVHEWP------RVSQYDETVLREGMVITIEPGIYIPKIGGVRIED 331
>pdb|3Q6D|A Chain A, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|B Chain B, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|C Chain C, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|D Chain D, Xaa-Pro Dipeptidase From Bacillus Anthracis
Length = 356
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 11/119 (9%)
Query: 18 TDVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLWKLGRD-- 75
+D++RT+ +G P+ + E Y+ L +R + A L + D L R + + G
Sbjct: 225 SDITRTIAVGEPSDKLKEIYNIVLEAQLRGVNGI-KAGLTGREADALTRDYITEKGYGEY 283
Query: 76 YPHGTGHGIGAFSSVHECTISFVQNNTDIYSSILTKVILLLSPEPGYYKEDEFGIRLED 134
+ H TGHGIG +HE +++T + + V EPG Y G+R+ED
Sbjct: 284 FGHSTGHGIGL--EIHEAPGLAFRSDTVLEPGMAVTV------EPGIYIPGIGGVRIED 334
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 15/119 (12%)
Query: 441 DKRYAAPSPIIE-MKAQKNDVEIKGMHEA-HIRDAVIFCDAMAFVEDQYFRGEDITETSV 498
D + S ++E ++ K D EIK + EA I DA F ++F+ ++E V
Sbjct: 114 DAEFIPTSGLVEKLRLIKTDSEIKILKEAAQIADAA-FEHILSFIRP------GVSEIEV 166
Query: 499 AHILDSH-RTENTISRGISFESIVAYGEHAALPHYTPSNATNVVVRGDAPLLVDSGGHY 556
++ L+ R + S SF+ IVA G +ALPH S V+ GD L D G +Y
Sbjct: 167 SNELEFFMRKQGATSS--SFDIIVASGLRSALPHGVASE--KVIETGDFVTL-DFGAYY 220
>pdb|4EGE|A Chain A, Crystal Structure Of Dipeptidase Pepe From Mycobacterium
Ulcerans
Length = 378
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 53/123 (43%), Gaps = 11/123 (8%)
Query: 18 TDVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLWKLGRD-- 75
+D +RT +G P+ + + YS AV P + + Q+D AR L G
Sbjct: 245 SDSTRTYSIGDPSPDVAQQYSALQRAQRAAVDAVRPG-VTAAQVDAAARDVLADAGLAEY 303
Query: 76 YPHGTGHGIGAFSSVHECTISFVQNNTDIYSSILTKVILLLSPEPGYYKEDEFGIRLEDI 135
+ H TGHGIG VHE N + + + S EPG Y +G R+EDI
Sbjct: 304 FVHRTGHGIGL--CVHEEPYIVAGNELPLVAG------MAFSIEPGIYFPGRWGARIEDI 355
Query: 136 FEV 138
V
Sbjct: 356 VVV 358
>pdb|4FKC|A Chain A, Recombinant Prolidase From Thermococcus Sibiricus
Length = 377
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 11/128 (8%)
Query: 18 TDVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLWKLGRD-- 75
+DV+RT+ +G P+ E+V+ + A + + +D AR + K G
Sbjct: 246 SDVTRTVVVGPPS-EEVKKVYEIVKEAQETAVQKVAEGIPAEVVDATARGIISKYGYGEY 304
Query: 76 YPHGTGHGIGAFSSVHECTISFVQNNTDIYSSILTKVILLLSPEPGYYKEDEFGIRLEDI 135
+ H TGHG+G VHE N + K ++ + EPG Y + +FG+R+ED
Sbjct: 305 FIHRTGHGLGI--DVHEEPYISPGNKK------ILKDGMVFTIEPGIYLQGKFGVRIEDD 356
Query: 136 FEVVYAAG 143
+V G
Sbjct: 357 VALVDKKG 364
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 12/112 (10%)
Query: 448 SPII-EMKAQKNDVEIKGMHEA-HIRDAVIFCDAMAFVEDQYFRGEDITETSVAHILDSH 505
SP+I E++ K+ EIK +A I D V + F+E + E +E +A+ ++
Sbjct: 141 SPVISELREIKDKDEIKAHKKAAEIVDKVFY----RFIEGKL---EGKSERELANRIEYM 193
Query: 506 RTENTISRGISFESIVAYGEHAALPHYTPSNATNVVVRGDAPLLVDSGGHYM 557
+ +SFE IVA G + A PH+ PS+ + +GD ++ D G Y+
Sbjct: 194 IKNEFGADDVSFEPIVASGPNGANPHHRPSHRK--IRKGDV-VIFDYGAKYL 242
>pdb|1WN1|A Chain A, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|1WN1|B Chain B, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|2HOW|A Chain A, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
pdb|2HOW|B Chain B, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
Length = 356
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 20/159 (12%)
Query: 401 YEKVWNDLRNIGLYWNRIWLPSQIA--YSAGVSKAITTLFSPDKRYAAPSPIIEMKAQKN 458
Y K+ L +G+ RI + + + G+ K F P S I E++ K+
Sbjct: 79 YAKLREILEELGISKGRILIEDTMRADWLIGIMKLGKFTFQP-----LSSLIKELRMIKD 133
Query: 459 DVEIKGM-HEAHIRDAVIFCDAMAFVEDQYFRGEDITETSVAHILDSHRTENTISRGISF 517
E+K M H + I D V F E + + E +A L +S GI+F
Sbjct: 134 KEEVKMMEHASRIADKV-------FEEILTWDLIGMKERELA--LKIELLIRELSDGIAF 184
Query: 518 ESIVAYGEHAALPHYTPSNATNVVVRGDAPLLVDSGGHY 556
E IVA GE+AA PH+ P + +GD +++D G +
Sbjct: 185 EPIVASGENAANPHHEPGERK--IRKGDI-IILDYGARW 220
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 11/119 (9%)
Query: 18 TDVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLWKLGRD-- 75
+D++RT+ LG V+ Y AV + + +D AR + K G
Sbjct: 225 SDITRTIGLGELDERLVKIYEVVKDAQESAFKAVREG-IKAKDVDSRAREVISKAGYGEY 283
Query: 76 YPHGTGHGIGAFSSVHECTISFVQNNTDIYSSILTKVILLLSPEPGYYKEDEFGIRLED 134
+ H TGHG+G VHE ++ + + ++ K + + EPG Y G+R+ED
Sbjct: 284 FIHRTGHGLGL--DVHEE--PYIGPDGE----VILKNGMTFTIEPGIYVPGLGGVRIED 334
>pdb|3L24|A Chain A, Crystal Structure Of The Nerve Agent Degrading
Organophosphate AnhydrolasePROLIDASE IN COMPLEX WITH
Inhibitors
pdb|3L24|B Chain B, Crystal Structure Of The Nerve Agent Degrading
Organophosphate AnhydrolasePROLIDASE IN COMPLEX WITH
Inhibitors
pdb|3L24|C Chain C, Crystal Structure Of The Nerve Agent Degrading
Organophosphate AnhydrolasePROLIDASE IN COMPLEX WITH
Inhibitors
pdb|3L7G|A Chain A, Crystal Structure Of Organophosphate AnhydrolasePROLIDASE
pdb|3L7G|B Chain B, Crystal Structure Of Organophosphate AnhydrolasePROLIDASE
pdb|3L7G|C Chain C, Crystal Structure Of Organophosphate AnhydrolasePROLIDASE
Length = 517
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 14/114 (12%)
Query: 447 PSPIIEM----KAQKNDVEIKGMHEAHIRDAVIFCDAMAFVEDQYFRGEDITETSVAHIL 502
P P++ +A K E+ M EA+ I D +F+G+ E A++L
Sbjct: 146 PEPVMNFYHYHRAYKTQYELACMREAN----KIAVQGHKAARDAFFQGKSEFEIQQAYLL 201
Query: 503 DSHRTENTISRGISFESIVAYGEHAALPHYTPSNATNVVVRGDAPLLVDSGGHY 556
+ +EN G +IVA E+ A+ HYT + V L+D+G ++
Sbjct: 202 ATQHSENDNPYG----NIVALNENCAILHYT--HFDRVAPATHRSFLIDAGANF 249
>pdb|2DUN|A Chain A, Solution Structure Of Brct Domain Of Dna Polymerase Mu
Length = 133
Score = 33.1 bits (74), Expect = 0.45, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 177 VHPR--DERLKFLSGFSGSYGFAVVTATKAALWVTGLDELQADLELSCDWLLMKSGHPGV 234
V PR R FL+G + S GF V+ A + ++E A+ +S M + PG
Sbjct: 19 VEPRMGRSRRAFLTGLARSKGFRVLDACSSEATHVVMEETSAEEAVSWQERRMAAAPPGC 78
Query: 235 --PTITE--WLKDELGTGMRVGVD 254
P + + WL + LG G V V+
Sbjct: 79 TPPALLDISWLTESLGAGQPVPVE 102
>pdb|2HTF|A Chain A, The Solution Structure Of The Brct Domain From Human
Polymerase Reveals Homology With The Tdt Brct Domain
Length = 105
Score = 32.7 bits (73), Expect = 0.49, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 177 VHPR--DERLKFLSGFSGSYGFAVVTATKAALWVTGLDELQADLELSCDWLLMKSGHPGV 234
V PR R FL+G + S GF V+ A + ++E A+ +S M + PG
Sbjct: 16 VEPRMGRSRRAFLTGLARSKGFRVLDACSSEATHVVMEETSAEEAVSWQERRMAAAPPGC 75
Query: 235 --PTITE--WLKDELGTGMRVGVD 254
P + + WL + LG G V V+
Sbjct: 76 TPPALLDISWLTESLGAGQPVPVE 99
>pdb|3RVA|A Chain A, Crystal Structure Of Organophosphorus Acid Anhydrolase
From Alteromonas Macleodii
Length = 451
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 10/104 (9%)
Query: 453 MKAQKNDVEIKGMHEAHIRDAVIFCDAMAFVEDQYFRGEDITETSVAHILDSHRTENTIS 512
+A K D E+ M EA+ + AV A E + G+ + ++A+ S + +N +
Sbjct: 156 QRAYKTDYELDCMREAN-KLAVAGHKA---AEQAFREGKSEFDINLAYAAASRQGDNDVP 211
Query: 513 RGISFESIVAYGEHAALPHYTPSNATNVVVRGDAPLLVDSGGHY 556
+ SIVA EHA++ HY + V + L+D+G +Y
Sbjct: 212 ----YTSIVALNEHASILHYMQXDT--VAPKESRSFLIDAGANY 249
>pdb|3S6K|A Chain A, Crystal Structure Of Xcnags
Length = 467
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 74/154 (48%), Gaps = 20/154 (12%)
Query: 246 GTGMRVGVDPKLIPN----SQFEYLQRE--LNNATILLVQVVNNLIDQIWIKNRPLYSTH 299
GTG + + KLI + +++++L ++ +N + ++ + +L+D++ PL S+
Sbjct: 235 GTGGLLDAEGKLIDSINLSTEYDHLXQQPWINGGXRVKIEQIKDLLDRL-----PLESSV 289
Query: 300 DAFIIQNEIAGESYQNK-----FERVRRILRSVDCDAL---IVTALDEIAWLLNIRAWDL 351
+ ++A E + +K R R+LR+ D L +T+L E ++ +
Sbjct: 290 -SITRPADLAKELFTHKGSGTLVRRGERVLRATSWDELDLPRLTSLIESSFGRTLVPDYF 348
Query: 352 PHSPFLRAYLAITESQVYLYTDEKKLSNAVRMYL 385
++ LRAY++ + TDE L + +YL
Sbjct: 349 SNTKLLRAYVSENYRAAVILTDEGXLGASALIYL 382
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,314,046
Number of Sequences: 62578
Number of extensions: 744533
Number of successful extensions: 1644
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1617
Number of HSP's gapped (non-prelim): 24
length of query: 559
length of database: 14,973,337
effective HSP length: 104
effective length of query: 455
effective length of database: 8,465,225
effective search space: 3851677375
effective search space used: 3851677375
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)