Query psy6861
Match_columns 559
No_of_seqs 426 out of 3764
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 20:17:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6861.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6861hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2413|consensus 100.0 2.1E-93 4.6E-98 740.2 27.6 384 160-557 23-409 (606)
2 COG0006 PepP Xaa-Pro aminopept 100.0 2.6E-30 5.5E-35 273.2 15.7 147 2-162 232-381 (384)
3 PRK15173 peptidase; Provisiona 100.0 7.1E-29 1.5E-33 255.2 14.7 145 2-161 172-319 (323)
4 cd01085 APP X-Prolyl Aminopept 100.0 1.4E-28 3E-33 240.1 14.5 136 2-142 81-218 (224)
5 PRK09795 aminopeptidase; Provi 100.0 9.5E-28 2.1E-32 251.5 20.4 214 315-558 2-219 (361)
6 PRK09795 aminopeptidase; Provi 100.0 4.5E-28 9.7E-33 254.0 13.6 143 2-161 205-355 (361)
7 PRK12897 methionine aminopepti 99.9 9.9E-28 2.1E-32 238.4 14.2 142 2-156 87-247 (248)
8 PRK14575 putative peptidase; P 99.9 1.1E-27 2.4E-32 254.1 15.4 146 1-161 254-402 (406)
9 cd01090 Creatinase Creatine am 99.9 1.3E-27 2.9E-32 234.2 14.0 138 2-155 79-227 (228)
10 TIGR02993 ectoine_eutD ectoine 99.9 8.1E-27 1.8E-31 246.6 20.1 231 306-557 4-253 (391)
11 PRK07281 methionine aminopepti 99.9 2.5E-27 5.5E-32 238.3 14.5 147 2-161 91-284 (286)
12 PRK05716 methionine aminopepti 99.9 4.6E-27 1E-31 234.5 15.0 146 2-160 88-252 (252)
13 TIGR02993 ectoine_eutD ectoine 99.9 4.2E-27 9E-32 248.8 14.9 143 2-161 240-387 (391)
14 COG0006 PepP Xaa-Pro aminopept 99.9 3.3E-26 7.2E-31 241.9 21.7 234 306-558 3-246 (384)
15 KOG2413|consensus 99.9 9.8E-28 2.1E-32 250.6 9.4 179 4-184 397-579 (606)
16 PRK14576 putative endopeptidas 99.9 9.3E-27 2E-31 246.9 14.9 146 2-162 254-402 (405)
17 PRK12318 methionine aminopepti 99.9 1.6E-26 3.5E-31 233.9 15.1 144 2-159 128-291 (291)
18 TIGR00500 met_pdase_I methioni 99.9 2E-26 4.3E-31 229.2 14.7 142 2-156 86-246 (247)
19 cd01087 Prolidase Prolidase. E 99.9 1.5E-26 3.3E-31 229.4 13.5 139 2-156 72-243 (243)
20 PRK10879 proline aminopeptidas 99.9 1.7E-26 3.6E-31 246.8 13.5 149 2-167 251-431 (438)
21 cd01091 CDC68-like Related to 99.9 2.2E-26 4.9E-31 227.0 13.2 136 3-155 91-242 (243)
22 PLN03158 methionine aminopepti 99.9 4.5E-26 9.8E-31 237.8 16.0 148 2-162 220-387 (396)
23 cd01086 MetAP1 Methionine Amin 99.9 1.2E-25 2.6E-30 222.3 14.5 143 1-156 77-238 (238)
24 PRK12896 methionine aminopepti 99.9 4.2E-25 9.1E-30 220.7 14.8 143 2-156 93-254 (255)
25 PRK13607 proline dipeptidase; 99.9 4.7E-25 1E-29 235.2 13.9 143 2-156 239-438 (443)
26 cd01092 APP-like Similar to Pr 99.9 3.7E-24 8E-29 207.1 14.3 132 1-141 72-206 (208)
27 PRK14575 putative peptidase; P 99.9 4.6E-23 9.9E-28 218.8 20.5 228 316-558 12-269 (406)
28 PRK14576 putative endopeptidas 99.9 7.5E-23 1.6E-27 217.1 20.2 230 317-558 13-268 (405)
29 KOG2414|consensus 99.9 6.2E-23 1.3E-27 204.8 11.0 144 3-164 307-480 (488)
30 PF00557 Peptidase_M24: Metall 99.9 1.4E-22 3.1E-27 195.9 11.2 130 2-140 73-207 (207)
31 KOG2737|consensus 99.9 1.3E-22 2.8E-27 200.3 9.3 157 3-170 269-480 (492)
32 cd01066 APP_MetAP A family inc 99.9 1E-21 2.2E-26 188.9 14.1 131 2-141 72-205 (207)
33 cd01089 PA2G4-like Related to 99.9 7.5E-22 1.6E-26 193.8 13.1 132 2-155 85-227 (228)
34 COG0024 Map Methionine aminope 99.9 4.9E-21 1.1E-25 186.4 14.1 151 2-158 89-253 (255)
35 PRK10879 proline aminopeptidas 99.8 1.5E-20 3.3E-25 201.0 15.2 229 310-558 3-265 (438)
36 KOG2738|consensus 99.8 6.9E-19 1.5E-23 169.2 12.2 150 2-156 199-359 (369)
37 PRK08671 methionine aminopepti 99.7 1.7E-17 3.8E-22 168.4 13.7 123 2-133 74-198 (291)
38 PTZ00053 methionine aminopepti 99.7 2.9E-17 6.2E-22 173.2 12.7 121 2-131 236-367 (470)
39 cd01088 MetAP2 Methionine Amin 99.7 4.8E-17 1E-21 165.2 12.7 123 2-133 73-197 (291)
40 TIGR00501 met_pdase_II methion 99.7 6.6E-17 1.4E-21 164.2 12.4 123 2-135 77-203 (295)
41 TIGR00495 crvDNA_42K 42K curve 99.7 1E-16 2.3E-21 168.0 13.4 130 2-135 103-243 (389)
42 PRK13607 proline dipeptidase; 99.7 9.3E-16 2E-20 163.9 16.8 102 446-558 151-253 (443)
43 KOG2737|consensus 99.7 1.4E-15 3E-20 150.9 14.5 232 303-559 11-283 (492)
44 PRK15173 peptidase; Provisiona 99.7 1.3E-15 2.9E-20 156.9 14.5 142 405-558 45-186 (323)
45 KOG2414|consensus 99.6 3E-15 6.6E-20 150.1 12.9 246 292-558 42-320 (488)
46 PRK12897 methionine aminopepti 99.4 3.2E-13 6.9E-18 134.4 9.8 94 455-558 3-101 (248)
47 cd01085 APP X-Prolyl Aminopept 99.4 5.8E-13 1.3E-17 130.2 9.5 95 464-558 1-95 (224)
48 PF01321 Creatinase_N: Creatin 99.4 1.5E-12 3.4E-17 116.0 10.7 128 316-456 1-132 (132)
49 PRK07281 methionine aminopepti 99.4 1.2E-12 2.7E-17 132.0 9.3 92 454-555 2-102 (286)
50 PRK12318 methionine aminopepti 99.4 1.3E-12 2.9E-17 132.5 8.7 98 450-557 36-141 (291)
51 TIGR00500 met_pdase_I methioni 99.4 2.4E-12 5.1E-17 128.1 9.7 94 455-558 2-100 (247)
52 PRK12896 methionine aminopepti 99.3 1.3E-11 2.8E-16 123.3 8.7 97 452-558 6-107 (255)
53 KOG1189|consensus 99.2 2.2E-11 4.7E-16 130.3 8.9 160 9-184 235-405 (960)
54 PLN03158 methionine aminopepti 99.2 2.8E-11 6E-16 127.0 9.4 100 449-558 130-234 (396)
55 PRK05716 methionine aminopepti 99.2 7.8E-11 1.7E-15 117.5 9.7 95 454-558 3-102 (252)
56 cd01087 Prolidase Prolidase. E 99.1 2.9E-10 6.4E-15 112.7 9.0 86 462-558 1-86 (243)
57 cd01092 APP-like Similar to Pr 99.0 1E-09 2.2E-14 105.9 8.9 87 462-558 1-87 (208)
58 TIGR00495 crvDNA_42K 42K curve 99.0 2.5E-09 5.5E-14 112.5 10.5 97 454-558 11-117 (389)
59 PF00557 Peptidase_M24: Metall 99.0 1.7E-09 3.7E-14 104.5 8.1 87 463-558 1-87 (207)
60 cd01090 Creatinase Creatine am 98.9 2.5E-09 5.4E-14 105.0 8.4 86 462-557 1-92 (228)
61 PTZ00053 methionine aminopepti 98.9 6.8E-09 1.5E-13 110.2 10.4 98 453-558 149-250 (470)
62 TIGR00501 met_pdase_II methion 98.8 1.5E-08 3.3E-13 103.2 9.7 89 460-558 3-91 (295)
63 cd01066 APP_MetAP A family inc 98.8 1.3E-08 2.9E-13 97.4 8.7 85 462-557 1-85 (207)
64 PF01321 Creatinase_N: Creatin 98.8 9E-09 1.9E-13 91.6 5.8 102 182-289 23-130 (132)
65 PRK08671 methionine aminopepti 98.8 2E-08 4.3E-13 102.2 9.0 88 461-558 1-88 (291)
66 cd01089 PA2G4-like Related to 98.8 2.5E-08 5.5E-13 97.9 8.9 89 462-558 1-99 (228)
67 cd01091 CDC68-like Related to 98.7 2.8E-08 6.1E-13 98.3 8.7 93 462-558 1-104 (243)
68 COG5406 Nucleosome binding fac 98.7 7E-08 1.5E-12 101.9 11.7 166 3-185 270-447 (1001)
69 cd01086 MetAP1 Methionine Amin 98.7 6.4E-08 1.4E-12 95.7 8.8 86 462-557 1-91 (238)
70 cd01088 MetAP2 Methionine Amin 98.6 2E-07 4.2E-12 95.0 8.8 87 462-558 1-87 (291)
71 COG0024 Map Methionine aminope 98.5 6E-07 1.3E-11 88.1 9.3 93 456-558 5-103 (255)
72 KOG2738|consensus 98.1 1.6E-05 3.5E-10 77.8 9.0 94 455-557 115-212 (369)
73 KOG1189|consensus 97.2 0.012 2.5E-07 64.8 16.5 199 340-557 20-241 (960)
74 KOG2775|consensus 97.0 0.0011 2.4E-08 65.2 5.9 108 2-120 163-284 (397)
75 KOG2775|consensus 95.8 0.063 1.4E-06 53.2 9.6 90 460-557 83-176 (397)
76 PF05195 AMP_N: Aminopeptidase 95.2 0.069 1.5E-06 47.8 7.4 104 310-423 3-128 (134)
77 KOG2776|consensus 94.2 0.18 4E-06 51.3 8.0 72 2-74 105-182 (398)
78 KOG2776|consensus 93.8 0.27 5.8E-06 50.2 8.2 97 454-558 13-119 (398)
79 COG5406 Nucleosome binding fac 90.4 2.9 6.2E-05 45.8 11.4 233 310-558 8-283 (1001)
80 TIGR03241 arg_catab_astB succi 71.8 11 0.00024 39.3 6.8 154 292-499 249-415 (443)
81 PF14826 FACT-Spt16_Nlob: FACT 62.9 18 0.00038 33.5 5.7 58 311-376 4-79 (163)
82 PRK13281 succinylarginine dihy 61.1 21 0.00046 37.4 6.3 153 292-499 250-413 (442)
83 COG4007 Predicted dehydrogenas 60.5 39 0.00085 33.5 7.7 141 169-335 50-194 (340)
84 COG3710 CadC DNA-binding winge 48.4 42 0.0009 30.5 5.5 56 258-329 32-87 (148)
85 PF04555 XhoI: Restriction end 42.5 40 0.00087 31.7 4.4 38 291-328 134-171 (196)
86 smart00862 Trans_reg_C Transcr 42.1 50 0.0011 25.5 4.6 58 258-329 6-63 (78)
87 cd00383 trans_reg_C Effector d 40.0 44 0.00094 27.1 4.0 57 258-329 24-80 (95)
88 PF00486 Trans_reg_C: Transcri 39.9 35 0.00076 26.4 3.3 57 258-329 6-62 (77)
89 TIGR00035 asp_race aspartate r 35.1 59 0.0013 31.6 4.7 120 193-336 75-195 (229)
90 PRK11835 hypothetical protein; 32.1 20 0.00044 30.4 0.8 13 182-194 14-26 (114)
91 PF08003 Methyltransf_9: Prote 29.3 2.1E+02 0.0046 29.3 7.5 93 239-339 130-227 (315)
92 PF13989 YejG: YejG-like prote 27.0 29 0.00062 29.1 0.8 22 310-331 48-69 (106)
93 COG1794 RacX Aspartate racemas 26.8 1.7E+02 0.0036 28.6 6.0 78 248-335 117-195 (230)
94 PF07305 DUF1454: Protein of u 26.2 3.8E+02 0.0082 25.3 7.9 75 28-121 112-187 (200)
95 cd01994 Alpha_ANH_like_IV This 26.1 2.6E+02 0.0056 26.5 7.3 59 248-337 88-146 (194)
96 PF08799 PRP4: pre-mRNA proces 25.2 79 0.0017 20.5 2.4 21 304-324 10-30 (30)
97 COG2179 Predicted hydrolase of 24.1 1.3E+02 0.0028 28.0 4.5 45 238-282 20-70 (175)
98 PTZ00445 p36-lilke protein; Pr 23.8 3.3E+02 0.0072 26.4 7.4 91 238-342 10-105 (219)
99 PF14503 YhfZ_C: YhfZ C-termin 20.1 1.4E+02 0.0031 29.3 4.2 37 243-281 109-145 (232)
No 1
>KOG2413|consensus
Probab=100.00 E-value=2.1e-93 Score=740.16 Aligned_cols=384 Identities=38% Similarity=0.657 Sum_probs=369.3
Q ss_pred CcceeecccCCCCCCcccccccccccccCCCCCCcceEEEecCceEEEecchhHHHHhhhcCCCEEEEEcCCCCCCCHHH
Q psy6861 160 EPKFIDISLFGPEESEEVHPRDERLKFLSGFSGSYGFAVVTATKAALWVTGLDELQADLELSCDWLLMKSGHPGVPTITE 239 (559)
Q Consensus 160 ~~~~~~i~~~D~h~~e~~~~~~~~~~~lsgFtGs~g~~vvt~~~a~l~tD~RY~~qa~~ql~~~~~l~~~~~~~~~~~~~ 239 (559)
++..||+|+.|+|||||++++|+||+|||||+||||+||||..+|+||||||||.||++|||++|+|||+|.+ +|++.+
T Consensus 23 ~i~aYi~Ps~DaH~sEy~~~~D~R~~flsGFsGsag~Avit~~~a~lwtD~RY~~QA~~qld~~W~l~k~~~~-~~~v~~ 101 (606)
T KOG2413|consen 23 PIDAYILPSTDAHQSEYIADRDERRAFLSGFSGSAGTAVITEEEAALWTDGRYFQQAEQQLDSNWTLMKMGED-VPTVEE 101 (606)
T ss_pred CceEEEccCCchhhhhhhcchhhhhhhhcccCCCcceEEEecCcceEEEccHHHHHHHhhhcccceeeeccCC-CccHHH
Confidence 4677999999999999999999999999999999999999999999999999999999999999999999987 899999
Q ss_pred HHHhhcCCCcEEeeCCCCCCHHHHHHHHHHHhhCCCEEEecCCCchHHhhccCCCCCCCCccccccccccCccHHHHHHH
Q psy6861 240 WLKDELGTGMRVGVDPKLIPNSQFEYLQRELNNATILLVQVVNNLIDQIWIKNRPLYSTHDAFIIQNEIAGESYQNKFER 319 (559)
Q Consensus 240 wl~~~l~~~~~vg~d~~~~s~~~~~~~~~~l~~~~~~~~~~~~~lvd~iw~~~rP~~~~~~i~~~~~~~~g~~~~~Ri~r 319 (559)
||.+++++|++||+||+++|+..|+++.+.|..++.+|++++.||||+|| .+||++|.+||+.++.+|+|.++..|+..
T Consensus 102 wl~~~l~~~~~vG~Dp~Lis~~~~~~~~~~l~s~~~~Lv~i~~nLVD~iW-~~rP~~~~~~v~~l~~~~~G~~~~~Kv~~ 180 (606)
T KOG2413|consen 102 WLAKVLPEGSRVGIDPTLISFDAWKQLEKSLTSKGLELVPIPGNLVDEIW-GDRPERPGNPVIVLDLEFAGLSVDDKVDN 180 (606)
T ss_pred HHHHhCCCccccccCcceechhHHHhHHHHHhhCCCeEeeccccchhhhh-ccCCccCCCceEEeeccccCcchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999 69999999999999999999999999999
Q ss_pred HHHHHHhCCCCEEEEcccchhhhhcCccCCCCCCCcceeEEEEEeCCeEEEEecCCccCHHHHHhhcccCCCCCcceEEE
Q psy6861 320 VRRILRSVDCDALIVTALDEIAWLLNIRAWDLPHSPFLRAYLAITESQVYLYTDEKKLSNAVRMYLHIDSCTSPLCVRVK 399 (559)
Q Consensus 320 lr~~m~~~~~dalilt~~dni~yltn~rg~di~~~Pv~~~~llv~~~~~~lfv~~~~~~~~~~~~l~~~~~~~~~~v~v~ 399 (559)
+|+.|++.+++++|++++|+|+||+|+||+||||||||++|++++.+++.||++..+++.+...++. ..+++++
T Consensus 181 LR~~l~~~~~~a~Vvs~LdeIaWllNLRGsDipynPv~~sY~~it~dei~lfvd~~k~~~~~~~~~~------~~~v~i~ 254 (606)
T KOG2413|consen 181 LRKKLKEKKCDAFVVTALDEIAWLLNLRGSDIPYNPVFYSYAIITMDEIFLFVDNSKLSDESKKHLR------EDGVEIR 254 (606)
T ss_pred HHHHHhhcCCcEEehhhHHHHHHHHhcccCcCCCCchhhhhhhhhhhhhheeecCcccCchhHHHHh------hCceeee
Confidence 9999999999999999999999999999999999999999999999999999999999999888887 5799999
Q ss_pred echhHHHHHHhhccC--CCEEEEcCCCCcccchhHHHHHHcCCCCeecCCChhHHHHhcCCHHHHHHHHHHHHHhHHHHH
Q psy6861 400 EYEKVWNDLRNIGLY--WNRIWLPSQIAYSAGVSKAITTLFSPDKRYAAPSPIIEMKAQKNDVEIKGMHEAHIRDAVIFC 477 (559)
Q Consensus 400 ~y~~~~~~L~~l~~~--~~~I~id~~~~~~~~~~~~l~~~l~~~~~v~~~~~i~~lRaiKn~~EI~~~R~A~i~d~~Al~ 477 (559)
+|.+++..++.+... ..+|++.+. +++.+...+++.+.+...+||..+|++||+.|+++||.||++|++|++
T Consensus 255 pY~~i~~~i~~~~~~~~~~~i~ia~~------~~~~i~~~i~~~~~~~~~Spi~~~kAiKN~~E~~gmr~shirD~~Alv 328 (606)
T KOG2413|consen 255 PYDQIWSDIKNWASAFADKKIWISPE------TNYGIGELIGEDHSMIDPSPISRAKAIKNDDELKGMRNSHIRDGAALV 328 (606)
T ss_pred eHHHHHHHHHHHhcccCceeEeeccc------ceeeecccccccccccccCHHHHHHHhcChHHhhhhhhcchhhHHHHH
Confidence 999999999888753 468999884 788888888888888888999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCcCHHHHHHHHHHHHHhcCCCCCCCccccccc-CCCCccccccCCCCCCceecCCCcEEEecCccc
Q psy6861 478 DAMAFVEDQYFRGEDITETSVAHILDSHRTENTISRGISFESIVAY-GEHAALPHYTPSNATNVVVRGDAPLLVDSGGHY 556 (559)
Q Consensus 478 ~~~~~l~~~l~~G~~~tE~ei~~~l~~~r~~~~g~~~~sf~tIva~-G~n~A~~Hy~~~~~t~~~i~~gd~vliDsG~~Y 556 (559)
++++|+++++..|..+||.+++++|+++|.++.+|.|+||+||+++ |+|||++||.|.++++++|.+..++|+|||+||
T Consensus 329 e~~~wle~~~~~g~~itE~~~A~kle~fR~~~~~fmglSFeTIS~s~G~NgAviHYsP~~e~n~~i~~~kiyL~DSGaQY 408 (606)
T KOG2413|consen 329 EYFAWLEKELHKGYTITEYDAADKLEEFRSRQDHFMGLSFETISSSVGPNGAVIHYSPPAETNRIVSPDKIYLCDSGAQY 408 (606)
T ss_pred HHHHHHhhhhhcCcccchhhHHHHHHHHHHhhccccCcCcceeeccCCCCceeeecCCCccccceecCceEEEEccCccc
Confidence 9999999999999669999999999999999999999999999977 999999999999999999999999999999999
Q ss_pred c
Q psy6861 557 M 557 (559)
Q Consensus 557 ~ 557 (559)
+
T Consensus 409 ~ 409 (606)
T KOG2413|consen 409 L 409 (606)
T ss_pred c
Confidence 6
No 2
>COG0006 PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=99.97 E-value=2.6e-30 Score=273.24 Aligned_cols=147 Identities=29% Similarity=0.398 Sum_probs=131.1
Q ss_pred CCCceEEEEEEEEcC-ccceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHH--hcCCCCC
Q psy6861 2 ENTGLFRLILARIDG-TTDVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLWK--LGRDYPH 78 (559)
Q Consensus 2 ~~~~~~~~~G~~~~G-~aD~tRT~~vG~~~~~~~~~~~~~~~a~~~~~~~~~~~G~~~~~i~~~~~~~~~~--~g~~~~~ 78 (559)
.||.|++++|+.|+| |+|+||||++|+|+++|+++|+.|++|+.+++.+++ ||+++.+++.++++++++ ++.++.|
T Consensus 232 ~gd~vliD~G~~~~gY~sDiTRT~~~G~~~~~~~~iy~~V~~aq~aa~~~~r-pG~~~~~vd~~ar~~i~~~g~~~~~~h 310 (384)
T COG0006 232 DGDLVLIDLGGVYNGYCSDITRTFPIGKPSDEQREIYEAVLEAQEAAIAAIR-PGVTGGEVDAAARQVLEKAGYGLYFLH 310 (384)
T ss_pred CCCEEEEEeeeEECCccccceeEEecCCCCHHHHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHHhcCCcccccC
Confidence 589999999999999 999999999999999999999999999887766565 699999999999999999 7789999
Q ss_pred CceecCCCCCCCCCCcccccCCCcccccccccccceEeCCCCccccCcccceeeeeeEEEEEecCCCCcccceeeccCCC
Q psy6861 79 GTGHGIGAFSSVHECTISFVQNNTDIYSSILTKVILLLSPEPGYYKEDEFGIRLEDIFEVVYAAGTDEQYLAFKPVTAVP 158 (559)
Q Consensus 79 ~~GHgiGl~~~~hE~P~~~~~~~~~~~~~~~l~~GMV~tiEP~i~~~g~~giried~~~vt~~~~~~~~~~~~e~lt~~p 158 (559)
++|||+|.++++||.|..+.+++. .+|+||||||+|||+|.+|.+||||||+++||++ |+|+||..|
T Consensus 311 ~~GHgvG~~l~vhE~p~~~~~~~~-----~~L~~GMv~t~Epg~y~~g~~GirIEd~vlVte~--------G~e~LT~~~ 377 (384)
T COG0006 311 GTGHGVGFVLDVHEHPQYLSPGSD-----TTLEPGMVFSIEPGIYIPGGGGVRIEDTVLVTED--------GFEVLTRVP 377 (384)
T ss_pred CccccCCCCcccCcCccccCCCCC-----ccccCCcEEEeccccccCCCceEEEEEEEEEcCC--------CceecccCC
Confidence 999999933399999953455544 3699999999999999999999999999999997 699999777
Q ss_pred CCcc
Q psy6861 159 FEPK 162 (559)
Q Consensus 159 ~~~~ 162 (559)
.++.
T Consensus 378 ~~~~ 381 (384)
T COG0006 378 KELL 381 (384)
T ss_pred ccee
Confidence 6654
No 3
>PRK15173 peptidase; Provisional
Probab=99.96 E-value=7.1e-29 Score=255.22 Aligned_cols=145 Identities=19% Similarity=0.201 Sum_probs=129.6
Q ss_pred CCCceEEEEEEEEcC-ccceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhcC--CCCC
Q psy6861 2 ENTGLFRLILARIDG-TTDVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLWKLGR--DYPH 78 (559)
Q Consensus 2 ~~~~~~~~~G~~~~G-~aD~tRT~~vG~~~~~~~~~~~~~~~a~~~~~~~~~~~G~~~~~i~~~~~~~~~~~g~--~~~~ 78 (559)
.||.|++++|+.|+| ++|+||||++|+|+++|+++|+++++++.+++.++ +||+++++|+.++++++++.|+ ++.|
T Consensus 172 ~Gd~V~iD~g~~~~GY~aDitRT~~vG~p~~~~~~~y~~v~ea~~~~~~~i-rPG~~~~dv~~a~~~~~~~~G~~~~~~~ 250 (323)
T PRK15173 172 SGDLIKFDCGVDVDGYGADIARTFVVGEPPEITRKIYQTIRTGHEHMLSMV-APGVKMKDVFDSTMEVIKKSGLPNYNRG 250 (323)
T ss_pred CCCEEEEEeCccCCCEeeeeEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHHHcCCccccCC
Confidence 689999999999999 99999999999999999999999999988765555 5699999999999999999875 5678
Q ss_pred CceecCCCCCCCCCCcccccCCCcccccccccccceEeCCCCccccCcccceeeeeeEEEEEecCCCCcccceeeccCCC
Q psy6861 79 GTGHGIGAFSSVHECTISFVQNNTDIYSSILTKVILLLSPEPGYYKEDEFGIRLEDIFEVVYAAGTDEQYLAFKPVTAVP 158 (559)
Q Consensus 79 ~~GHgiGl~~~~hE~P~~~~~~~~~~~~~~~l~~GMV~tiEP~i~~~g~~giried~~~vt~~~~~~~~~~~~e~lt~~p 158 (559)
++|||||+++.+||.|.+ ..+++ .+|++||||||||++|.++.+|+|+||+++||++ |+|.||.+|
T Consensus 251 ~~GHGiG~~lg~~E~P~i-~~~~~-----~~Le~GMV~tiEPgiy~~g~ggvriEDtvlVTe~--------G~e~LT~~p 316 (323)
T PRK15173 251 HLGHGNGVFLGLEESPFV-STHAT-----ESFTSGMVLSLETPYYGYNLGSIMIEDMILINKE--------GIEFLSKLP 316 (323)
T ss_pred CCCCcCCCCCCcCCCCCC-CCCCC-----CccCCCCEEEECCEEEcCCCcEEEEeeEEEEcCC--------cceeCCCCC
Confidence 999999987789999975 33333 3699999999999999999999999999999998 799999999
Q ss_pred CCc
Q psy6861 159 FEP 161 (559)
Q Consensus 159 ~~~ 161 (559)
+++
T Consensus 317 ~~l 319 (323)
T PRK15173 317 RDL 319 (323)
T ss_pred ccc
Confidence 875
No 4
>cd01085 APP X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline, even from a dipeptide or tripeptide.
Probab=99.96 E-value=1.4e-28 Score=240.13 Aligned_cols=136 Identities=47% Similarity=0.711 Sum_probs=123.5
Q ss_pred CCCceEEEEEEEEcC-ccceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhcCCCCCCc
Q psy6861 2 ENTGLFRLILARIDG-TTDVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLWKLGRDYPHGT 80 (559)
Q Consensus 2 ~~~~~~~~~G~~~~G-~aD~tRT~~vG~~~~~~~~~~~~~~~a~~~~~~~~~~~G~~~~~i~~~~~~~~~~~g~~~~~~~ 80 (559)
+||.|++++|+.++| ++|++|||++|+|+++|+++|+.+++++++++...++||+++.++++++++.+.+.|..|.|++
T Consensus 81 ~GD~V~iD~g~~~~gY~aD~~RT~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~g~~~~h~~ 160 (224)
T cd01085 81 PDGLYLIDSGGQYLDGTTDITRTVHLGEPTAEQKRDYTLVLKGHIALARAKFPKGTTGSQLDALARQPLWKAGLDYGHGT 160 (224)
T ss_pred CCCEEEEEeCccCCCcccccEEeecCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCCC
Confidence 689999999999999 9999999999999999999999999998887777777899999999999999999999899999
Q ss_pred eecCCCCCCCCCCcccc-cCCCcccccccccccceEeCCCCccccCcccceeeeeeEEEEEec
Q psy6861 81 GHGIGAFSSVHECTISF-VQNNTDIYSSILTKVILLLSPEPGYYKEDEFGIRLEDIFEVVYAA 142 (559)
Q Consensus 81 GHgiGl~~~~hE~P~~~-~~~~~~~~~~~~l~~GMV~tiEP~i~~~g~~giried~~~vt~~~ 142 (559)
|||||+++++||.|.++ .+++. .+|++||||||||++|.+|.+|+|+||+++||+++
T Consensus 161 GHgIG~~l~~hE~P~i~~~~~~~-----~~L~~GmvftiEP~iy~~g~~gvried~v~Vt~~G 218 (224)
T cd01085 161 GHGVGSFLNVHEGPQSISPAPNN-----VPLKAGMILSNEPGYYKEGKYGIRIENLVLVVEAE 218 (224)
T ss_pred CCCCCCCCcCCCCCCcCCcCCCC-----CCcCCCCEEEECCEeEeCCCeEEEeeEEEEEeeCC
Confidence 99999544899999764 33332 47999999999999999999999999999999983
No 5
>PRK09795 aminopeptidase; Provisional
Probab=99.96 E-value=9.5e-28 Score=251.53 Aligned_cols=214 Identities=16% Similarity=0.147 Sum_probs=165.9
Q ss_pred HHHHHHHHHHHhCCCCEEEEcccchhhhhcCccCCCCCCCcceeEEEEEeCCeEEEEecCCccCHHHHHhhcccCCCCCc
Q psy6861 315 NKFERVRRILRSVDCDALIVTALDEIAWLLNIRAWDLPHSPFLRAYLAITESQVYLYTDEKKLSNAVRMYLHIDSCTSPL 394 (559)
Q Consensus 315 ~Ri~rlr~~m~~~~~dalilt~~dni~yltn~rg~di~~~Pv~~~~llv~~~~~~lfv~~~~~~~~~~~~l~~~~~~~~~ 394 (559)
+|++++|+.|+++++|++++++++|++|||||.++. ++++++.++..||+|.++..++..+ .. ..
T Consensus 2 ~Rl~~l~~~m~~~~lDa~lI~~~~n~~YLTGf~g~~--------g~llIt~~~~~l~td~ry~~qa~~~-~~------~~ 66 (361)
T PRK09795 2 TLLASLRDWLKAQQLDAVLLSSRQNKQPHLGISTGS--------GYVVISRESAHILVDSRYYADVEAR-AQ------GY 66 (361)
T ss_pred cHHHHHHHHHHHCCCCEEEECCccccccccCccCCC--------eEEEEECCCCEEEcCcchHHHHHhh-CC------Cc
Confidence 589999999999999999999999999999999863 5788899888899998865553222 21 11
Q ss_pred ceEEEech-hHHHHHHhhccC--CCEEEEcCCCCcccchhHHHHHHcCCC-CeecCCChhHHHHhcCCHHHHHHHHHHHH
Q psy6861 395 CVRVKEYE-KVWNDLRNIGLY--WNRIWLPSQIAYSAGVSKAITTLFSPD-KRYAAPSPIIEMKAQKNDVEIKGMHEAHI 470 (559)
Q Consensus 395 ~v~v~~y~-~~~~~L~~l~~~--~~~I~id~~~~~~~~~~~~l~~~l~~~-~~v~~~~~i~~lRaiKn~~EI~~~R~A~i 470 (559)
.+.+..+. .+.+.|.++++. .++|++|... ++...++.|.+. +.......+..+|+|||++||+.||+|+.
T Consensus 67 ~v~~~~~~~~~~~~L~~~L~~~~~~~Ig~e~~~-----~s~~~~~~L~~~l~~~~~~~~~~~lR~iKs~~Ei~~~r~a~~ 141 (361)
T PRK09795 67 QLHLLDATNTLTTIVNQIIADEQLQTLGFEGQQ-----VSWETAHRWQSELNAKLVSATPDVLRQIKTPEEVEKIRLACG 141 (361)
T ss_pred eEEEecCCccHHHHHHHHHHhcCCcEEEEecCc-----ccHHHHHHHHHhcCcccccccHHHHhcCCCHHHHHHHHHHHH
Confidence 22222222 344556665432 2689999887 666666666432 11112224899999999999999999975
Q ss_pred HhHHHHHHHHHHHHHhccCCCCcCHHHHHHHHHHHHHhcCCCCCCCcccccccCCCCccccccCCCCCCceecCCCcEEE
Q psy6861 471 RDAVIFCDAMAFVEDQYFRGEDITETSVAHILDSHRTENTISRGISFESIVAYGEHAALPHYTPSNATNVVVRGDAPLLV 550 (559)
Q Consensus 471 ~d~~Al~~~~~~l~~~l~~G~~~tE~ei~~~l~~~r~~~~g~~~~sf~tIva~G~n~A~~Hy~~~~~t~~~i~~gd~vli 550 (559)
+...++..++ +.+++| +||.|++..++.. +...|+...+|++|+++|+|+++||+.|+ +++|++||+|++
T Consensus 142 i~~~~~~~~~----~~i~~G--~tE~e~~~~~~~~-~~~~G~~~~~f~~iv~sG~~~~~ph~~~~---~~~l~~gd~v~~ 211 (361)
T PRK09795 142 IADRGAEHIR----RFIQAG--MSEREIAAELEWF-MRQQGAEKASFDTIVASGWRGALPHGKAS---DKIVAAGEFVTL 211 (361)
T ss_pred HHHHHHHHHH----HhccCC--CcHHHHHHHHHHH-HHHCCCCcCCCCeEEEEeccccccCCCCC---CceecCCCEEEE
Confidence 5555655444 668999 9999999999887 56788999999999999999999999998 999999999999
Q ss_pred ecCccccc
Q psy6861 551 DSGGHYMV 558 (559)
Q Consensus 551 DsG~~Y~~ 558 (559)
|+|+.|+.
T Consensus 212 d~g~~~~g 219 (361)
T PRK09795 212 DFGALYQG 219 (361)
T ss_pred EeccccCC
Confidence 99999863
No 6
>PRK09795 aminopeptidase; Provisional
Probab=99.95 E-value=4.5e-28 Score=253.98 Aligned_cols=143 Identities=26% Similarity=0.310 Sum_probs=125.6
Q ss_pred CCCceEEEEEEEEcC-ccceeeEEEcCC--CCH---HHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhcC-
Q psy6861 2 ENTGLFRLILARIDG-TTDVSRTLHLGS--PTR---EQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLWKLGR- 74 (559)
Q Consensus 2 ~~~~~~~~~G~~~~G-~aD~tRT~~vG~--~~~---~~~~~~~~~~~a~~~~~~~~~~~G~~~~~i~~~~~~~~~~~g~- 74 (559)
.||.|++++|+.|+| ++|+||||++|. +++ +++++|+++++++.+++.++ +||++++||++++++++++.|+
T Consensus 205 ~gd~v~~d~g~~~~gY~sd~tRt~~~g~~~~~~~~~~~~~~~~~v~~a~~~~~~~~-rpG~~~~~v~~~~~~~~~~~g~~ 283 (361)
T PRK09795 205 AGEFVTLDFGALYQGYCSDMTRTLLVNGEGVSAESHPLFNVYQIVLQAQLAAISAI-RPGVRCQQVDDAARRVITEAGYG 283 (361)
T ss_pred CCCEEEEEeccccCCEeecceEEEEeCCcCCchhHHHHHHHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHHHcCCC
Confidence 689999999999999 999999999964 233 37899999999987765555 5699999999999999999664
Q ss_pred -CCCCCceecCCCCCCCCCCcccccCCCcccccccccccceEeCCCCccccCcccceeeeeeEEEEEecCCCCcccceee
Q psy6861 75 -DYPHGTGHGIGAFSSVHECTISFVQNNTDIYSSILTKVILLLSPEPGYYKEDEFGIRLEDIFEVVYAAGTDEQYLAFKP 153 (559)
Q Consensus 75 -~~~~~~GHgiGl~~~~hE~P~~~~~~~~~~~~~~~l~~GMV~tiEP~i~~~g~~giried~~~vt~~~~~~~~~~~~e~ 153 (559)
++.|++|||||+ ++||.|.+ .++++ .+|++||||||||++|.|+.+|+|+||+++||++ |+|+
T Consensus 284 ~~~~h~~GHgiGl--~~he~p~i-~~~~~-----~~l~~gmv~~iEpgiy~~~~~gvriEd~v~vt~~--------G~e~ 347 (361)
T PRK09795 284 DYFGHNTGHAIGI--EVHEDPRF-SPRDT-----TTLQPGMLLTVEPGIYLPGQGGVRIEDVVLVTPQ--------GAEV 347 (361)
T ss_pred ccCCCCCCccCCc--cccCCCCc-CCCCC-----CCcCCCCEEEECCEEEeCCCCEEEEeeEEEECCC--------CcEe
Confidence 689999999999 99999964 55543 3699999999999999999999999999999998 7999
Q ss_pred ccCCCCCc
Q psy6861 154 VTAVPFEP 161 (559)
Q Consensus 154 lt~~p~~~ 161 (559)
||.+|.++
T Consensus 348 Lt~~~~~l 355 (361)
T PRK09795 348 LYAMPKTV 355 (361)
T ss_pred CcCCCceE
Confidence 99999875
No 7
>PRK12897 methionine aminopeptidase; Reviewed
Probab=99.95 E-value=9.9e-28 Score=238.45 Aligned_cols=142 Identities=14% Similarity=0.109 Sum_probs=122.7
Q ss_pred CCCceEEEEEEEEcC-ccceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhcCC-CCCC
Q psy6861 2 ENTGLFRLILARIDG-TTDVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLWKLGRD-YPHG 79 (559)
Q Consensus 2 ~~~~~~~~~G~~~~G-~aD~tRT~~vG~~~~~~~~~~~~~~~a~~~~~~~~~~~G~~~~~i~~~~~~~~~~~g~~-~~~~ 79 (559)
+||.|++++|+.++| ++|++|||++|+|+++|+++|+++++++.+++.++ +||++++|+++++++++++.|+. +.|+
T Consensus 87 ~Gd~V~iD~g~~~~GY~sD~tRT~~vG~~s~~~~~~~~~~~~a~~~~i~~~-kpG~~~~dv~~a~~~~~~~~g~~~~~~~ 165 (248)
T PRK12897 87 EGDIVTIDMVVNLNGGLSDSAWTYRVGKVSDEAEKLLLVAENALYKGIDQA-VIGNRVGDIGYAIESYVANEGFSVARDF 165 (248)
T ss_pred CCCEEEEEeeEEECCEEEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHhh-cCCCccchHHHHHHHHHHHcCCccCCCe
Confidence 689999999999999 99999999999999999999999999987765555 56999999999999999998764 4789
Q ss_pred ceecCCCCCCCCCCcccccCCCcccccccccccceEeCCCCccc-----------------cCcccceeeeeeEEEEEec
Q psy6861 80 TGHGIGAFSSVHECTISFVQNNTDIYSSILTKVILLLSPEPGYY-----------------KEDEFGIRLEDIFEVVYAA 142 (559)
Q Consensus 80 ~GHgiGl~~~~hE~P~~~~~~~~~~~~~~~l~~GMV~tiEP~i~-----------------~~g~~giried~~~vt~~~ 142 (559)
+|||||+ ++||.|.+.+.... ....+|+||||||+||++| .+|.+|+|+||+++||++
T Consensus 166 ~GHgiGl--~~hE~P~i~~~~~~--~~~~~l~~Gmv~tiEP~~~~~~~~~~~~~~~~~~~~~~g~~g~r~edtv~Vt~~- 240 (248)
T PRK12897 166 TGHGIGK--EIHEEPAIFHFGKQ--GQGPELQEGMVITIEPIVNVGMRYSKVDLNGWTARTMDGKLSAQYEHTIAITKD- 240 (248)
T ss_pred EECccCC--cccCCCccCCCCCC--CCCCCcCCCCEEEECCeEecCCCceEECCCCcEEEcCCCCeEeecceEEEEeCC-
Confidence 9999999 99999976432211 1234799999999999999 356789999999999998
Q ss_pred CCCCcccceeeccC
Q psy6861 143 GTDEQYLAFKPVTA 156 (559)
Q Consensus 143 ~~~~~~~~~e~lt~ 156 (559)
|+|.||.
T Consensus 241 -------G~e~lt~ 247 (248)
T PRK12897 241 -------GPIILTK 247 (248)
T ss_pred -------ccEEeec
Confidence 6899985
No 8
>PRK14575 putative peptidase; Provisional
Probab=99.95 E-value=1.1e-27 Score=254.08 Aligned_cols=146 Identities=20% Similarity=0.226 Sum_probs=129.7
Q ss_pred CCCCceEEEEEEEEcC-ccceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhcC--CCC
Q psy6861 1 CENTGLFRLILARIDG-TTDVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLWKLGR--DYP 77 (559)
Q Consensus 1 ~~~~~~~~~~G~~~~G-~aD~tRT~~vG~~~~~~~~~~~~~~~a~~~~~~~~~~~G~~~~~i~~~~~~~~~~~g~--~~~ 77 (559)
+.||.|++++|+.++| ++|+||||++|+|+++|+++|+++++++.+++.++ +||++++||++++++++++.|+ ++.
T Consensus 254 ~~Gd~v~iD~g~~~~GY~sditRT~~vG~~~~~~~~~~~~~~~a~~~~~~~~-rpG~~~~dv~~a~~~~~~~~G~~~~~~ 332 (406)
T PRK14575 254 CSGDLIKFDCGVDVDGYGADIARTFVVGEPPEITRKIYQTIRTGHEHMLSMV-APGVKMKDVFDSTMEVIKKSGLPNYNR 332 (406)
T ss_pred CCCCEEEEEeceEECCEeeeeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHHHcCCccccC
Confidence 3689999999999999 99999999999999999999999999987765544 5799999999999999999775 567
Q ss_pred CCceecCCCCCCCCCCcccccCCCcccccccccccceEeCCCCccccCcccceeeeeeEEEEEecCCCCcccceeeccCC
Q psy6861 78 HGTGHGIGAFSSVHECTISFVQNNTDIYSSILTKVILLLSPEPGYYKEDEFGIRLEDIFEVVYAAGTDEQYLAFKPVTAV 157 (559)
Q Consensus 78 ~~~GHgiGl~~~~hE~P~~~~~~~~~~~~~~~l~~GMV~tiEP~i~~~g~~giried~~~vt~~~~~~~~~~~~e~lt~~ 157 (559)
|++|||+|+++.+||.|++ ..+++ .+|++|||||+||++|.++.+|+|+||+++||++ |+|.||.+
T Consensus 333 ~~~GHGiG~~lg~~e~P~i-~~~~~-----~~Le~GMv~tiEpgiy~~g~gGvriEDtvlVT~~--------G~e~LT~~ 398 (406)
T PRK14575 333 GHLGHGNGVFLGLEESPFV-STHAT-----ESFTSGMVLSLETPYYGYNLGSIMIEDMILINKE--------GIEFLSKL 398 (406)
T ss_pred CCCCCcccCCCCCccCCCC-CCCCC-----CCcCCCCEEEECCeeecCCCcEEEEEeEEEEcCC--------CcccCCCC
Confidence 8999999965589999975 44433 3699999999999999999999999999999998 79999999
Q ss_pred CCCc
Q psy6861 158 PFEP 161 (559)
Q Consensus 158 p~~~ 161 (559)
|+++
T Consensus 399 p~~l 402 (406)
T PRK14575 399 PRDL 402 (406)
T ss_pred Cccc
Confidence 9875
No 9
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=99.95 E-value=1.3e-27 Score=234.15 Aligned_cols=138 Identities=16% Similarity=0.124 Sum_probs=120.6
Q ss_pred CCCceEEEEEEEEcC-ccceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhcC--CCCC
Q psy6861 2 ENTGLFRLILARIDG-TTDVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLWKLGR--DYPH 78 (559)
Q Consensus 2 ~~~~~~~~~G~~~~G-~aD~tRT~~vG~~~~~~~~~~~~~~~a~~~~~~~~~~~G~~~~~i~~~~~~~~~~~g~--~~~~ 78 (559)
+||.|++++|+.++| ++|++|||++|+|+++|+++|+++++++.++..++ +||+++++|+++++++++++|+ ++.|
T Consensus 79 ~GD~v~~d~g~~~~GY~ad~~RT~~vG~~~~~~~~~~~~~~ea~~~~~~~~-rpG~~~~~v~~a~~~~~~~~G~~~~~~~ 157 (228)
T cd01090 79 RGDILSLNCFPMIAGYYTALERTLFLDEVSDAHLKIWEANVAVHERGLELI-KPGARCKDIAAELNEMYREHDLLRYRTF 157 (228)
T ss_pred CCCEEEEEEeEEECCEeeeeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHHHcCCCccccc
Confidence 689999999999999 99999999999999999999999999987665545 5699999999999999999775 5678
Q ss_pred CceecCCCCCCCCCCccc----ccCCCcccccccccccceEeCCCCccccC----cccceeeeeeEEEEEecCCCCcccc
Q psy6861 79 GTGHGIGAFSSVHECTIS----FVQNNTDIYSSILTKVILLLSPEPGYYKE----DEFGIRLEDIFEVVYAAGTDEQYLA 150 (559)
Q Consensus 79 ~~GHgiGl~~~~hE~P~~----~~~~~~~~~~~~~l~~GMV~tiEP~i~~~----g~~giried~~~vt~~~~~~~~~~~ 150 (559)
++|||||+ .+||.|.. +..+ ...+|+||||||+||++|.+ |.+|+|+||+++||++ |
T Consensus 158 ~~GHgiGl--~~he~~~~~g~~~~~~-----~~~~Le~GMV~~iEP~i~~~~~~~g~gG~ried~v~Vt~~--------G 222 (228)
T cd01090 158 GYGHSFGV--LSHYYGREAGLELRED-----IDTVLEPGMVVSMEPMIMLPEGQPGAGGYREHDILVINEN--------G 222 (228)
T ss_pred ccCccccc--ccccCCCccccccCCC-----CCCccCCCCEEEECCEEeecccCCCCcEEEeeeEEEECCC--------c
Confidence 99999999 89998731 2222 23579999999999999984 7899999999999998 6
Q ss_pred eeecc
Q psy6861 151 FKPVT 155 (559)
Q Consensus 151 ~e~lt 155 (559)
+|.||
T Consensus 223 ~e~Lt 227 (228)
T cd01090 223 AENIT 227 (228)
T ss_pred cccCc
Confidence 89987
No 10
>TIGR02993 ectoine_eutD ectoine utilization protein EutD. Members of this family are putative peptidases or hydrolases similar to Xaa-Pro aminopeptidase (pfam00557). They belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. The exact function is unknown.
Probab=99.95 E-value=8.1e-27 Score=246.59 Aligned_cols=231 Identities=16% Similarity=0.199 Sum_probs=165.8
Q ss_pred ccccCccHHHHHHHHHHHHHhCCCCEEEEcccchhhhhcCccCCCCCCCcceeEEEEEe-CCeEEEEecCCccCHHHHH-
Q psy6861 306 NEIAGESYQNKFERVRRILRSVDCDALIVTALDEIAWLLNIRAWDLPHSPFLRAYLAIT-ESQVYLYTDEKKLSNAVRM- 383 (559)
Q Consensus 306 ~~~~g~~~~~Ri~rlr~~m~~~~~dalilt~~dni~yltn~rg~di~~~Pv~~~~llv~-~~~~~lfv~~~~~~~~~~~- 383 (559)
..|+.+++++|++|+|+.|+++++|++++++++||+||||+.+.. +.+ ..+++++ .++++++++..+.......
T Consensus 4 ~~f~~~E~~~Rl~rl~~~m~~~~lDalli~~~~ni~YltG~~~~~--~~~--~~~l~v~~~~~~~l~~~~~~~~~~~~~~ 79 (391)
T TIGR02993 4 LFFTRAEYQARLDKTRAAMEARGIDLLIVTDPSNMAWLTGYDGWS--FYV--HQCVLLPPEGEPIWYGRGQDANGAKRTA 79 (391)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCcccceeeccCCCCc--eEE--EEEEEEcCCCceEEEehhhhhhhHhhee
Confidence 457889999999999999999999999999999999999998642 222 2356666 4467788876543332111
Q ss_pred hhcccCCCCCcceEEEec-------------hhHHHHHHhhccCCCEEEEcCCC-CcccchhHHHHHHcCCCCeecCCCh
Q psy6861 384 YLHIDSCTSPLCVRVKEY-------------EKVWNDLRNIGLYWNRIWLPSQI-AYSAGVSKAITTLFSPDKRYAAPSP 449 (559)
Q Consensus 384 ~l~~~~~~~~~~v~v~~y-------------~~~~~~L~~l~~~~~~I~id~~~-~~~~~~~~~l~~~l~~~~~v~~~~~ 449 (559)
++. ...+..| +.+.+.|++......+||+|.+. .++......+.+.++...+++...+
T Consensus 80 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~e~~~~~~~~~~~~~l~~~l~~~~~~d~~~~ 151 (391)
T TIGR02993 80 FMD--------HDNIVGYPDHYVQSTERHPMDYLSEILQDRGWDSLTIGVEMDNYYFSAAAFASLQKHLPNARFVDATAL 151 (391)
T ss_pred ecc--------ccceeecccccccCCCCCHHHHHHHHHHhcCCCCCcEEEecCCCccCHHHHHHHHHhCCCCEEEehHHH
Confidence 110 0011111 22334444443223589999763 1222223344455565677788889
Q ss_pred hHHHHhcCCHHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCcCHHHHHHHHHHHHHh---cCCCCCCCcccccccCCC
Q psy6861 450 IIEMKAQKNDVEIKGMHEAHIRDAVIFCDAMAFVEDQYFRGEDITETSVAHILDSHRTE---NTISRGISFESIVAYGEH 526 (559)
Q Consensus 450 i~~lRaiKn~~EI~~~R~A~i~d~~Al~~~~~~l~~~l~~G~~~tE~ei~~~l~~~r~~---~~g~~~~sf~tIva~G~n 526 (559)
+.++|+|||++||+.||+|..+...++.+++ +.+++| +||.|++..+....+. ..|...++|.+|+++|+|
T Consensus 152 ~~~lR~iKs~~EI~~lr~A~~i~~~~~~~~~----~~i~pG--~tE~ei~~~~~~~~~~~~~~~g~~~~~~~~iv~sG~~ 225 (391)
T TIGR02993 152 VNWQRAVKSETEISYMRVAARIVEKMHQRIF----ERIEPG--MRKCDLVADIYDAGIRGVDGFGGDYPAIVPLLPSGAD 225 (391)
T ss_pred HHHHHccCCHHHHHHHHHHHHHHHHHHHHHH----HHhcCC--CCHHHHHHHHHHhhhhcccCcCCCcCCcccccccCcc
Confidence 9999999999999999999766555655544 679999 9999999998654222 134445688889999999
Q ss_pred CccccccCCCCCCceecCCCcEEEecCcccc
Q psy6861 527 AALPHYTPSNATNVVVRGDAPLLVDSGGHYM 557 (559)
Q Consensus 527 ~A~~Hy~~~~~t~~~i~~gd~vliDsG~~Y~ 557 (559)
+++||+.|+ +++|++||++++|+|+.|+
T Consensus 226 ~a~pH~~~~---~~~l~~gd~v~iD~g~~~~ 253 (391)
T TIGR02993 226 ASAPHLTWD---DSPMKVGEGTFFEIAGCYK 253 (391)
T ss_pred ccCCCCCCC---CCcccCCCEEEEEeeeecc
Confidence 999999998 9999999999999999986
No 11
>PRK07281 methionine aminopeptidase; Reviewed
Probab=99.95 E-value=2.5e-27 Score=238.33 Aligned_cols=147 Identities=16% Similarity=0.119 Sum_probs=124.4
Q ss_pred CCCceEEEEEE---------------------------EEcC-ccceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHhhCC
Q psy6861 2 ENTGLFRLILA---------------------------RIDG-TTDVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFP 53 (559)
Q Consensus 2 ~~~~~~~~~G~---------------------------~~~G-~aD~tRT~~vG~~~~~~~~~~~~~~~a~~~~~~~~~~ 53 (559)
+||.|++++|+ .++| ++|++|||++|+|+++|+++|+++++++.+++.++ +
T Consensus 91 ~Gd~v~iD~g~~~~~~~y~~d~~~~~~~~~~~~~~~~~~~~gy~~D~~rT~~vG~~~~~~~~l~~~~~ea~~~ai~~~-k 169 (286)
T PRK07281 91 EGDLLKVDMVLSEPLDKSIVDVSKLNFDNVEQMKKYTESYRGGLADSCWAYAVGTPSDEVKNLMDVTKEAMYRGIEQA-V 169 (286)
T ss_pred CCCEEEEEecccccccccccccccccccccccccccccccCCEEeeeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHh-c
Confidence 68999999997 4889 99999999999999999999999999988766655 5
Q ss_pred CCCCHHHHHHHHHHHHHHhcCC-CCCCceecCCCCCCCCCCcccccCCCcccccccccccceEeCCCCcccc--------
Q psy6861 54 AHLHSNQLDILARAPLWKLGRD-YPHGTGHGIGAFSSVHECTISFVQNNTDIYSSILTKVILLLSPEPGYYK-------- 124 (559)
Q Consensus 54 ~G~~~~~i~~~~~~~~~~~g~~-~~~~~GHgiGl~~~~hE~P~~~~~~~~~~~~~~~l~~GMV~tiEP~i~~-------- 124 (559)
||++++||++++++++++.|+. +.|++|||||+ ++||.|++.+.... ....+|+|||||||||++|+
T Consensus 170 pG~~~~di~~a~~~~~~~~G~~~~~~~~GHGIGl--~~hE~P~i~~~~~~--~~~~~Le~GMV~tiEPgiy~~~~~~~~~ 245 (286)
T PRK07281 170 VGNRIGDIGAAIQEYAESRGYGVVRDLVGHGVGP--TMHEEPMVPNYGTA--GRGLRLREGMVLTIEPMINTGTWEIDTD 245 (286)
T ss_pred CCCcHHHHHHHHHHHHHHcCCccCCCeeeeeCCC--ccCCCCcCCCcccC--CCCCEECCCCEEEECCeeEcCCcceecc
Confidence 6999999999999999997653 57899999999 99999975322111 12357999999999999986
Q ss_pred ----------CcccceeeeeeEEEEEecCCCCcccceeeccCCCCCc
Q psy6861 125 ----------EDEFGIRLEDIFEVVYAAGTDEQYLAFKPVTAVPFEP 161 (559)
Q Consensus 125 ----------~g~~giried~~~vt~~~~~~~~~~~~e~lt~~p~~~ 161 (559)
+|.+|+|+||+++||++ |+|.||..+.++
T Consensus 246 ~~~gw~~~~~~g~~gvr~EdtvlVT~~--------G~e~LT~~~~~~ 284 (286)
T PRK07281 246 MKTGWAHKTLDGGLSCQYEHQFVITKD--------GPVILTSQGEER 284 (286)
T ss_pred cCCCceEEecCCCcEEEeccEEEEeCC--------cceECCCCCccc
Confidence 35668999999999998 799999877654
No 12
>PRK05716 methionine aminopeptidase; Validated
Probab=99.95 E-value=4.6e-27 Score=234.46 Aligned_cols=146 Identities=19% Similarity=0.101 Sum_probs=126.5
Q ss_pred CCCceEEEEEEEEcC-ccceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhcCC-CCCC
Q psy6861 2 ENTGLFRLILARIDG-TTDVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLWKLGRD-YPHG 79 (559)
Q Consensus 2 ~~~~~~~~~G~~~~G-~aD~tRT~~vG~~~~~~~~~~~~~~~a~~~~~~~~~~~G~~~~~i~~~~~~~~~~~g~~-~~~~ 79 (559)
+||.+++++|+.++| ++|++|||++|+|+++|+++|+++++++.+++.++ +||++++||++++++++++.|.. ..++
T Consensus 88 ~Gd~v~id~g~~~~gY~~d~~RT~~vG~~~~~~~~~~~~~~~~~~~~~~~~-~pG~~~~dv~~~~~~~~~~~g~~~~~~~ 166 (252)
T PRK05716 88 EGDIVNIDVTVIKDGYHGDTSRTFGVGEISPEDKRLCEVTKEALYLGIAAV-KPGARLGDIGHAIQKYAEAEGFSVVREY 166 (252)
T ss_pred CCCEEEEEEEEEECCEEEEeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHcCCeeecCc
Confidence 589999999999999 99999999999999999999999999988766655 56999999999999999998864 4678
Q ss_pred ceecCCCCCCCCCCcccccCCCcccccccccccceEeCCCCcccc-----------------CcccceeeeeeEEEEEec
Q psy6861 80 TGHGIGAFSSVHECTISFVQNNTDIYSSILTKVILLLSPEPGYYK-----------------EDEFGIRLEDIFEVVYAA 142 (559)
Q Consensus 80 ~GHgiGl~~~~hE~P~~~~~~~~~~~~~~~l~~GMV~tiEP~i~~-----------------~g~~giried~~~vt~~~ 142 (559)
+|||||+ .+||.|.+.+.... ....+|+|||||++||++|. +|.+|+|+||+++||++
T Consensus 167 ~GHgiG~--~~~e~p~~~~~~~~--~~~~~le~Gmv~~vEp~i~~~~~~~~~~~~~~~~~~~~g~~g~~~ed~v~Vt~~- 241 (252)
T PRK05716 167 CGHGIGR--KFHEEPQIPHYGAP--GDGPVLKEGMVFTIEPMINAGKREVKTLKDGWTVVTKDGSLSAQYEHTVAVTED- 241 (252)
T ss_pred cccccCC--ccCCCCccCcCCCC--CCCCEecCCCEEEEccEEEcCCCceEEcCCCCEEEccCCCcEEeeeeEEEEcCC-
Confidence 9999999 99999965433211 13457999999999999997 56789999999999998
Q ss_pred CCCCcccceeeccCCCCC
Q psy6861 143 GTDEQYLAFKPVTAVPFE 160 (559)
Q Consensus 143 ~~~~~~~~~e~lt~~p~~ 160 (559)
|+|.||..|.+
T Consensus 242 -------G~e~Lt~~~~~ 252 (252)
T PRK05716 242 -------GPEILTLRPEE 252 (252)
T ss_pred -------ccEEeeCCCCC
Confidence 79999998864
No 13
>TIGR02993 ectoine_eutD ectoine utilization protein EutD. Members of this family are putative peptidases or hydrolases similar to Xaa-Pro aminopeptidase (pfam00557). They belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. The exact function is unknown.
Probab=99.94 E-value=4.2e-27 Score=248.78 Aligned_cols=143 Identities=22% Similarity=0.221 Sum_probs=125.5
Q ss_pred CCCceEEEEEEEEcC-ccceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhcCCCCCCc
Q psy6861 2 ENTGLFRLILARIDG-TTDVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLWKLGRDYPHGT 80 (559)
Q Consensus 2 ~~~~~~~~~G~~~~G-~aD~tRT~~vG~~~~~~~~~~~~~~~a~~~~~~~~~~~G~~~~~i~~~~~~~~~~~g~~~~~~~ 80 (559)
+||+|++++|+.|+| ++|+||||++|+|+++|+++|+.+++++.+++. +++||++++||+++++++++++|+...|++
T Consensus 240 ~gd~v~iD~g~~~~GY~sD~tRT~~vG~p~~~~~~~~~~~~~a~~~~i~-~ikpG~~~~dv~~~~~~~~~~~G~~~~h~~ 318 (391)
T TIGR02993 240 VGEGTFFEIAGCYKRYHCPLSRTVFLGKPTQAFLDAEKAVLEGMEAGLE-AAKPGNTCEDIANAFFAVLKKYGIHKDSRT 318 (391)
T ss_pred CCCEEEEEeeeecccCccceeEEEEcCCCCHHHHHHHHHHHHHHHHHHH-HcCCCCcHHHHHHHHHHHHHHcCCccCCCc
Confidence 589999999999999 999999999999999999999999999876655 556799999999999999999998778999
Q ss_pred eecCCCCCCCCCC----cccccCCCcccccccccccceEeCCCCccccCcccceeeeeeEEEEEecCCCCcccceeeccC
Q psy6861 81 GHGIGAFSSVHEC----TISFVQNNTDIYSSILTKVILLLSPEPGYYKEDEFGIRLEDIFEVVYAAGTDEQYLAFKPVTA 156 (559)
Q Consensus 81 GHgiGl~~~~hE~----P~~~~~~~~~~~~~~~l~~GMV~tiEP~i~~~g~~giried~~~vt~~~~~~~~~~~~e~lt~ 156 (559)
|||||+ ..|+. +..+.++++ .+|++|||||+||++|.++ +|+|+||+++||++ |+|.||.
T Consensus 319 GhgiGl--~~~~~~~e~~~~l~~~~~-----~~L~~GMv~tvEpgiy~~~-~Gvried~v~VT~~--------G~e~Lt~ 382 (391)
T TIGR02993 319 GYPIGL--SYPPDWGERTMSLRPGDN-----TVLKPGMTFHFMTGLWMED-WGLEITESILITET--------GVECLSS 382 (391)
T ss_pred eeeecc--CcCCCCCCccccccCCCC-----ceecCCCEEEEcceeEeCC-CCeEEeeEEEECCC--------cceeccc
Confidence 999999 77642 213455543 4699999999999999976 59999999999998 7999999
Q ss_pred CCCCc
Q psy6861 157 VPFEP 161 (559)
Q Consensus 157 ~p~~~ 161 (559)
+|+++
T Consensus 383 ~p~~l 387 (391)
T TIGR02993 383 VPRKL 387 (391)
T ss_pred CCccc
Confidence 99887
No 14
>COG0006 PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=99.94 E-value=3.3e-26 Score=241.93 Aligned_cols=234 Identities=24% Similarity=0.304 Sum_probs=174.9
Q ss_pred ccccCccHHHHHHHHHHHHHhCCCCEEEEcccchhhhhcCccCCCCCCCcceeEEEEEeCC-eEEEEecCCccCHHHHHh
Q psy6861 306 NEIAGESYQNKFERVRRILRSVDCDALIVTALDEIAWLLNIRAWDLPHSPFLRAYLAITES-QVYLYTDEKKLSNAVRMY 384 (559)
Q Consensus 306 ~~~~g~~~~~Ri~rlr~~m~~~~~dalilt~~dni~yltn~rg~di~~~Pv~~~~llv~~~-~~~lfv~~~~~~~~~~~~ 384 (559)
..++..+...|+.+++..|++.++|+++++++.|++||||+.. ..+... ..++++.+ +++||++..+...+....
T Consensus 3 ~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~n~~yltg~~~--~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~ 78 (384)
T COG0006 3 LRFADEEYRARLARLRELMEEAGLDALLLTSPSNFYYLTGFDA--FGFERL--QALLVPAEGEPVLFVRGRDEEAAKETS 78 (384)
T ss_pred cccchHHHHHHHHHHHHHHHHcCCcEEEecCCCceEEEeCCCC--Ccccce--EEEEEcCCCceEEEEcchhHHHHHhhc
Confidence 3456678899999999999999999999999999999999985 123322 23444444 589999987654432221
Q ss_pred hcccCCCCCcce-EEEech-------hHHHHHHhhccCCCEEEEcCCCC-cccchhHHHHHHcCCCCeecCCChhHHHHh
Q psy6861 385 LHIDSCTSPLCV-RVKEYE-------KVWNDLRNIGLYWNRIWLPSQIA-YSAGVSKAITTLFSPDKRYAAPSPIIEMKA 455 (559)
Q Consensus 385 l~~~~~~~~~~v-~v~~y~-------~~~~~L~~l~~~~~~I~id~~~~-~~~~~~~~l~~~l~~~~~v~~~~~i~~lRa 455 (559)
.. .. ..+ .+..-. .+.+.+........+++++.... ++......+...++..++++..+++..+|+
T Consensus 79 ~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~lR~ 153 (384)
T COG0006 79 WI----KL-ENVEVYEDDEDPAAPLDLLGALLEELGLAGKRIGIESASIFLTLAAFERLQAALPRAELVDASDLVDRLRL 153 (384)
T ss_pred cc----cc-CceEEEecCCccccHHHHHHHHHHhccccccceEEEeccCccCHHHHHHHHhhCCCCEEeccHHHHHHHHh
Confidence 10 00 011 111111 23333333322246899987742 222233344455555567788889999999
Q ss_pred cCCHHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCcCHHHHHHHHHHHHHhcCCCCCCCcccccccCCCCccccccCC
Q psy6861 456 QKNDVEIKGMHEAHIRDAVIFCDAMAFVEDQYFRGEDITETSVAHILDSHRTENTISRGISFESIVAYGEHAALPHYTPS 535 (559)
Q Consensus 456 iKn~~EI~~~R~A~i~d~~Al~~~~~~l~~~l~~G~~~tE~ei~~~l~~~r~~~~g~~~~sf~tIva~G~n~A~~Hy~~~ 535 (559)
|||+.||+.||+|+.++++|+.++++| +++| +||.|++++++..+ .+.|..++||++|+++|+|+|+|||.|+
T Consensus 154 iKs~~EI~~ir~A~~i~~~a~~~~~~~----~~~g--~tE~ev~a~l~~~~-~~~G~~~~sf~~iv~~G~n~a~pH~~~~ 226 (384)
T COG0006 154 IKSPAEIAKIRKAAEIADAALEAALEA----IRPG--MTEAEIAAELEYAL-RKGGAEGPSFDTIVASGENAALPHYTPS 226 (384)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHh----ccCC--CcHHHHHHHHHHHH-HHcCCCccCcCcEEeccccccCcCCCCC
Confidence 999999999999999999999999866 6689 89999999999985 6677888899999999999999999999
Q ss_pred CCCCceecCCCcEEEecCccccc
Q psy6861 536 NATNVVVRGDAPLLVDSGGHYMV 558 (559)
Q Consensus 536 ~~t~~~i~~gd~vliDsG~~Y~~ 558 (559)
++++++||+|+||+||+|..
T Consensus 227 ---~~~~~~gd~vliD~G~~~~g 246 (384)
T COG0006 227 ---DRKLRDGDLVLIDLGGVYNG 246 (384)
T ss_pred ---cccccCCCEEEEEeeeEECC
Confidence 99999999999999999974
No 15
>KOG2413|consensus
Probab=99.94 E-value=9.8e-28 Score=250.59 Aligned_cols=179 Identities=45% Similarity=0.710 Sum_probs=157.2
Q ss_pred CceEE-EEEEEE-cCccceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhcCCCCCCce
Q psy6861 4 TGLFR-LILARI-DGTTDVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLWKLGRDYPHGTG 81 (559)
Q Consensus 4 ~~~~~-~~G~~~-~G~aD~tRT~~vG~~~~~~~~~~~~~~~a~~~~~~~~~~~G~~~~~i~~~~~~~~~~~g~~~~~~~G 81 (559)
+.+|. +-|+.| +|++|+|||+++|+||+++++.|+.|++++++.+.+.+|.|++...++..+|..+|+.|.+|.|+||
T Consensus 397 ~kiyL~DSGaQY~DGTTDvTRT~HfgePs~eek~~yT~VLkGhi~la~~vFP~~t~g~~lD~laR~~LW~~gLDy~HgTG 476 (606)
T KOG2413|consen 397 DKIYLCDSGAQYLDGTTDVTRTVHFGEPTAEEKEAYTLVLKGHIALARAVFPKGTKGSVLDALARSALWKAGLDYGHGTG 476 (606)
T ss_pred ceEEEEccCcccccCccceeEEEecCCCCHHHHHHHHHHHHhhhHhhhcccCCCCCcchhHHHHHHHHHhhccccCCCCC
Confidence 34444 667766 5599999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCcccccCCCcccccccccccceEeCCCCccccCcccceeeeeeEEEEEecCC--CCcccceeeccCCCC
Q psy6861 82 HGIGAFSSVHECTISFVQNNTDIYSSILTKVILLLSPEPGYYKEDEFGIRLEDIFEVVYAAGT--DEQYLAFKPVTAVPF 159 (559)
Q Consensus 82 HgiGl~~~~hE~P~~~~~~~~~~~~~~~l~~GMV~tiEP~i~~~g~~giried~~~vt~~~~~--~~~~~~~e~lt~~p~ 159 (559)
||||-|+++||+|.+++.... .....|++|||+++|||+|..|.+|+|+||.+.|.+.+.. ...|++||+||.+|.
T Consensus 477 HGVG~fLnVhE~P~~is~r~~--~~~~~l~ag~~~s~EPGYY~dg~fGIRienv~~vvd~~~~~~~~~~L~fe~lT~vP~ 554 (606)
T KOG2413|consen 477 HGVGSFLNVHEGPIGIGYRPY--SSNFPLQAGMVFSIEPGYYKDGEFGIRIENVVEVVDAGTKHNFRGFLTFEPLTLVPY 554 (606)
T ss_pred cccccceEeccCCceeeeeec--CCCchhcCceEeccCCcccccCcceEEEeeEEEEEeccccccccceeeeccceecce
Confidence 999999999999966554411 1234799999999999999999999999999999886433 578899999999999
Q ss_pred CcceeecccCCCCCCcccccccccc
Q psy6861 160 EPKFIDISLFGPEESEEVHPRDERL 184 (559)
Q Consensus 160 ~~~~~~i~~~D~h~~e~~~~~~~~~ 184 (559)
+.+++......+.+..|++.|.++.
T Consensus 555 q~klid~~LLs~eE~~~LN~Yh~~v 579 (606)
T KOG2413|consen 555 QTKLIDKSLLSEEEINWLNEYHAKV 579 (606)
T ss_pred ecccCChhhCCHHHHHHHHHHHHHH
Confidence 9999999998888877877777664
No 16
>PRK14576 putative endopeptidase; Provisional
Probab=99.94 E-value=9.3e-27 Score=246.91 Aligned_cols=146 Identities=20% Similarity=0.185 Sum_probs=129.7
Q ss_pred CCCceEEEEEEEEcC-ccceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhcC--CCCC
Q psy6861 2 ENTGLFRLILARIDG-TTDVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLWKLGR--DYPH 78 (559)
Q Consensus 2 ~~~~~~~~~G~~~~G-~aD~tRT~~vG~~~~~~~~~~~~~~~a~~~~~~~~~~~G~~~~~i~~~~~~~~~~~g~--~~~~ 78 (559)
.||.|++++|+.++| ++|+||||++|+|+++|+++|+++++++.+++.++ +||++++||+.+++++++++|+ ++.|
T Consensus 254 ~Gd~v~~d~g~~~~GY~sd~tRT~~~G~p~~~~~~~~~~~~~a~~a~~~~~-rPG~~~~dv~~a~~~~~~~~G~~~~~~~ 332 (405)
T PRK14576 254 VGDLIKFDCGIDVAGYGADLARTFVLGEPDKLTQQIYDTIRTGHEHMLSMV-APGVKLKAVFDSTMAVIKTSGLPHYNRG 332 (405)
T ss_pred CCCEEEEEeceeECCEEeeeeEEEECCCCCHHHHHHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHHHcCCccccCC
Confidence 589999999999999 99999999999999999999999999987765555 5699999999999999999885 4578
Q ss_pred CceecCCCCCCCCCCcccccCCCcccccccccccceEeCCCCccccCcccceeeeeeEEEEEecCCCCcccceeeccCCC
Q psy6861 79 GTGHGIGAFSSVHECTISFVQNNTDIYSSILTKVILLLSPEPGYYKEDEFGIRLEDIFEVVYAAGTDEQYLAFKPVTAVP 158 (559)
Q Consensus 79 ~~GHgiGl~~~~hE~P~~~~~~~~~~~~~~~l~~GMV~tiEP~i~~~g~~giried~~~vt~~~~~~~~~~~~e~lt~~p 158 (559)
++|||+|+++.+||.|. +.++++ .+|++|||||+||++|.+|.+|+|+||+++||++ |+|.||.+|
T Consensus 333 ~~GHgiG~~l~~~e~P~-i~~~~~-----~~Le~GMv~~vEp~~y~~g~ggvriEDtvlVTe~--------G~e~LT~~p 398 (405)
T PRK14576 333 HLGHGDGVFLGLEEVPF-VSTQAT-----ETFCPGMVLSLETPYYGIGVGSIMLEDMILITDS--------GFEFLSKLD 398 (405)
T ss_pred CCCCCCCCCCCcCcCCC-cCCCCC-----CccCCCCEEEECCceeecCCCEEEEeeEEEECCC--------ccccCCCCC
Confidence 99999995448999996 455543 3699999999999999999999999999999998 799999999
Q ss_pred CCcc
Q psy6861 159 FEPK 162 (559)
Q Consensus 159 ~~~~ 162 (559)
+++.
T Consensus 399 ~~l~ 402 (405)
T PRK14576 399 RDLR 402 (405)
T ss_pred cccc
Confidence 8853
No 17
>PRK12318 methionine aminopeptidase; Provisional
Probab=99.94 E-value=1.6e-26 Score=233.86 Aligned_cols=144 Identities=16% Similarity=0.149 Sum_probs=123.1
Q ss_pred CCCceEEEEEEEEcC-ccceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhcCC-CCCC
Q psy6861 2 ENTGLFRLILARIDG-TTDVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLWKLGRD-YPHG 79 (559)
Q Consensus 2 ~~~~~~~~~G~~~~G-~aD~tRT~~vG~~~~~~~~~~~~~~~a~~~~~~~~~~~G~~~~~i~~~~~~~~~~~g~~-~~~~ 79 (559)
+||.|++++|+.++| ++|++|||++|+|+++|+++|+.+++++.+++.++ +||++++||+++++++++++|+. +.|+
T Consensus 128 ~GD~V~vD~g~~~~GY~aDitRT~~vG~~~~~~~~~~~~~~~a~~~~i~~~-rpG~~~~dv~~a~~~~~~~~G~~~~~~~ 206 (291)
T PRK12318 128 NGDIMNIDVSCIVDGYYGDCSRMVMIGEVSEIKKKVCQASLECLNAAIAIL-KPGIPLYEIGEVIENCADKYGFSVVDQF 206 (291)
T ss_pred CCCEEEEEEeEEECcEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHcCCccCCCc
Confidence 589999999999999 99999999999999999999999999987766555 56999999999999999998875 4588
Q ss_pred ceecCCCCCCCCCCcccccCCCcccccccccccceEeCCCCccccCcccc------------------eeeeeeEEEEEe
Q psy6861 80 TGHGIGAFSSVHECTISFVQNNTDIYSSILTKVILLLSPEPGYYKEDEFG------------------IRLEDIFEVVYA 141 (559)
Q Consensus 80 ~GHgiGl~~~~hE~P~~~~~~~~~~~~~~~l~~GMV~tiEP~i~~~g~~g------------------iried~~~vt~~ 141 (559)
+|||||+ ++||.|++.+..+. ...+|++||||+|||++|.++.+| +++||+++||++
T Consensus 207 ~GHgIGl--~~hE~P~i~~~~~~---~~~~L~~GMV~~iEP~i~~~~~~g~~~~~~~~~~~~~~g~~~~~~edtv~VTe~ 281 (291)
T PRK12318 207 VGHGVGI--KFHENPYVPHHRNS---SKIPLAPGMIFTIEPMINVGKKEGVIDPINHWEARTCDNQPSAQWEHTILITET 281 (291)
T ss_pred ccCCcCc--cccCCCcccCcCCC---CCCEeCCCCEEEECCEEEcCCCceEEecCCCcEEEecCCCeeeeeeeEEEEcCC
Confidence 9999999 99999976442211 235799999999999999874333 347999999998
Q ss_pred cCCCCcccceeeccCCCC
Q psy6861 142 AGTDEQYLAFKPVTAVPF 159 (559)
Q Consensus 142 ~~~~~~~~~~e~lt~~p~ 159 (559)
|+|.||.+|+
T Consensus 282 --------G~e~LT~~~~ 291 (291)
T PRK12318 282 --------GYEILTLLDK 291 (291)
T ss_pred --------cceeCCCCCC
Confidence 7999998874
No 18
>TIGR00500 met_pdase_I methionine aminopeptidase, type I. Methionine aminopeptidase is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. This model describes type I. The role of this protein in general is to produce the mature form of cytosolic proteins by removing the N-terminal methionine.
Probab=99.94 E-value=2e-26 Score=229.20 Aligned_cols=142 Identities=14% Similarity=0.108 Sum_probs=122.3
Q ss_pred CCCceEEEEEEEEcC-ccceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhcCC-CCCC
Q psy6861 2 ENTGLFRLILARIDG-TTDVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLWKLGRD-YPHG 79 (559)
Q Consensus 2 ~~~~~~~~~G~~~~G-~aD~tRT~~vG~~~~~~~~~~~~~~~a~~~~~~~~~~~G~~~~~i~~~~~~~~~~~g~~-~~~~ 79 (559)
+||.|++++|+.|+| ++|++|||++|+|+++|+++|+++++++.+++..+ +||++++|+++++++++++.|.. +.++
T Consensus 86 ~Gd~v~iD~g~~~~gY~aD~~RT~~vG~~~~~~~~~~~~~~~a~~~~~~~~-kpG~~~~~v~~~~~~~~~~~g~~~~~~~ 164 (247)
T TIGR00500 86 DGDIVNIDVGVIYDGYHGDTAKTFLVGKISPEAEKLLECTEESLYKAIEEA-KPGNRIGEIGAAIQKYAEAKGFSVVREY 164 (247)
T ss_pred CCCEEEEEEEEEECCEEEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHcCCEeccCc
Confidence 689999999999999 99999999999999999999999999988766655 56999999999999999998864 4678
Q ss_pred ceecCCCCCCCCCCcccccCCCcccccccccccceEeCCCCccccC-----------------cccceeeeeeEEEEEec
Q psy6861 80 TGHGIGAFSSVHECTISFVQNNTDIYSSILTKVILLLSPEPGYYKE-----------------DEFGIRLEDIFEVVYAA 142 (559)
Q Consensus 80 ~GHgiGl~~~~hE~P~~~~~~~~~~~~~~~l~~GMV~tiEP~i~~~-----------------g~~giried~~~vt~~~ 142 (559)
+|||||+ .+||.|.+.+.... ....+|++|||||+||++|.+ +.+|+|+||+++||++
T Consensus 165 ~GHgiG~--~~~e~p~i~~~~~~--~~~~~l~~gmv~~iEp~i~~~~~~~~~~~~~~~~~~~~~~~g~ried~v~Vt~~- 239 (247)
T TIGR00500 165 CGHGIGR--KFHEEPQIPNYGKK--FTNVRLKEGMVFTIEPMVNTGTEEITTAADGWTVKTKDGSLSAQFEHTIVITDN- 239 (247)
T ss_pred cCCccCc--ccCCCCccCCcCcC--CCCCEecCCCEEEEeeEEEcCCCcEEECCCCCEEEccCCCeEEEEeEEEEEcCC-
Confidence 9999999 99999965332211 123579999999999999973 4579999999999998
Q ss_pred CCCCcccceeeccC
Q psy6861 143 GTDEQYLAFKPVTA 156 (559)
Q Consensus 143 ~~~~~~~~~e~lt~ 156 (559)
|+|.||.
T Consensus 240 -------G~e~Lt~ 246 (247)
T TIGR00500 240 -------GPEILTE 246 (247)
T ss_pred -------ccEEccC
Confidence 6899984
No 19
>cd01087 Prolidase Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Probab=99.94 E-value=1.5e-26 Score=229.43 Aligned_cols=139 Identities=25% Similarity=0.282 Sum_probs=121.0
Q ss_pred CCCceEEEEEEEEcC-ccceeeEEEc-CCCCHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhc------
Q psy6861 2 ENTGLFRLILARIDG-TTDVSRTLHL-GSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLWKLG------ 73 (559)
Q Consensus 2 ~~~~~~~~~G~~~~G-~aD~tRT~~v-G~~~~~~~~~~~~~~~a~~~~~~~~~~~G~~~~~i~~~~~~~~~~~g------ 73 (559)
+||.|++++|+.++| ++|++|||++ |+|+++++++|+++++++.+++.++ +||++++||++++++++++.+
T Consensus 72 ~Gd~v~vD~g~~~~GY~ad~~Rt~~vgg~~~~~~~~~~~~~~~a~~~~i~~~-rpG~~~~~v~~a~~~~~~~~~~~~g~~ 150 (243)
T cd01087 72 DGDLVLIDAGAEYGGYASDITRTFPVNGKFTDEQRELYEAVLAAQKAAIAAC-KPGVSYEDIHLLAHRVLAEGLKELGIL 150 (243)
T ss_pred CCCEEEEEeCceECCEeeeeeEEEEeCCcCCHHHHHHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHHHHHHHhcCcc
Confidence 689999999999999 9999999999 6899999999999999988766655 569999999999999997642
Q ss_pred --------------CCCCCCceecCCCCCCCCCCcccc-cCCCcccccccccccceEeCCCCccccCc----------cc
Q psy6861 74 --------------RDYPHGTGHGIGAFSSVHECTISF-VQNNTDIYSSILTKVILLLSPEPGYYKED----------EF 128 (559)
Q Consensus 74 --------------~~~~~~~GHgiGl~~~~hE~P~~~-~~~~~~~~~~~~l~~GMV~tiEP~i~~~g----------~~ 128 (559)
.++.|++|||||+ ++||.|.++ .++++ .+|++||||++||++|.++ .+
T Consensus 151 ~~~~~~~~~~~~~~~~~~h~~GhgiGl--~~~e~p~~~~~~~~~-----~~l~~GMv~~iEp~iy~~~~~~~~~~~~~~~ 223 (243)
T cd01087 151 KGDVDEIVESGAYAKFFPHGLGHYLGL--DVHDVGGYLRYLRRA-----RPLEPGMVITIEPGIYFIPDLLDVPEYFRGG 223 (243)
T ss_pred cCchHhhhhhhhhhhhcCCCCccccCc--ccccCccccccCCCC-----CCCCCCCEEEECCEEEeCCccccccccccee
Confidence 3678999999999 999999542 33332 4799999999999999987 68
Q ss_pred ceeeeeeEEEEEecCCCCcccceeeccC
Q psy6861 129 GIRLEDIFEVVYAAGTDEQYLAFKPVTA 156 (559)
Q Consensus 129 giried~~~vt~~~~~~~~~~~~e~lt~ 156 (559)
|+|+||+++||++ |+|.||.
T Consensus 224 g~~ied~v~Vt~~--------G~e~Lt~ 243 (243)
T cd01087 224 GIRIEDDVLVTED--------GPENLTR 243 (243)
T ss_pred EEEeeeEEEEcCC--------cceeCcC
Confidence 9999999999998 6899983
No 20
>PRK10879 proline aminopeptidase P II; Provisional
Probab=99.94 E-value=1.7e-26 Score=246.83 Aligned_cols=149 Identities=21% Similarity=0.256 Sum_probs=125.9
Q ss_pred CCCceEEEEEEEEcC-ccceeeEEEc-CCCCHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHH--------
Q psy6861 2 ENTGLFRLILARIDG-TTDVSRTLHL-GSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLWK-------- 71 (559)
Q Consensus 2 ~~~~~~~~~G~~~~G-~aD~tRT~~v-G~~~~~~~~~~~~~~~a~~~~~~~~~~~G~~~~~i~~~~~~~~~~-------- 71 (559)
.||.|++++|+.++| ++|+||||++ |+++++|+++|+++++++.+++. +++||+++++++.++.+++.+
T Consensus 251 ~GDlVliD~G~~~~GY~sDitRT~~v~G~~s~~q~~~y~~vl~a~~aai~-~~kpG~~~~~v~~~~~~~~~~~l~~~Gl~ 329 (438)
T PRK10879 251 DGDLVLIDAGCEYKGYAGDITRTFPVNGKFTPAQREIYDIVLESLETSLR-LYRPGTSIREVTGEVVRIMVSGLVKLGIL 329 (438)
T ss_pred CCCEEEEEeCeEECCEEEEeEEEEEECCcCCHHHHHHHHHHHHHHHHHHH-HcCCCCcHHHHHHHHHHHHHHHHHHhCCc
Confidence 589999999999999 9999999999 89999999999999999876555 456799999999999876542
Q ss_pred ------------hcCCCCCCceecCCCCCCCCCCcccccCCCcccccccccccceEeCCCCccccCc---------ccce
Q psy6861 72 ------------LGRDYPHGTGHGIGAFSSVHECTISFVQNNTDIYSSILTKVILLLSPEPGYYKED---------EFGI 130 (559)
Q Consensus 72 ------------~g~~~~~~~GHgiGl~~~~hE~P~~~~~~~~~~~~~~~l~~GMV~tiEP~i~~~g---------~~gi 130 (559)
++.+++|++|||||+ ++||.|.. ..++ .++|+||||||||||+|++. .+|+
T Consensus 330 ~~~~~~~~~~~~~~~~~~Hg~GH~iGl--dvHd~~~~-~~~~-----~~~L~~GmV~tvEPgiY~~~~~~~~~~~~~~Gi 401 (438)
T PRK10879 330 KGDVDQLIAENAHRPFFMHGLSHWLGL--DVHDVGVY-GQDR-----SRILEPGMVLTVEPGLYIAPDADVPEQYRGIGI 401 (438)
T ss_pred CCCHHHHHHhccCccccCCCCccccCc--CcCcCCCc-CCCC-----CCcCCCCCEEEECCEEEECCCcCcccccCccEE
Confidence 224679999999999 99999853 3332 24799999999999999863 2699
Q ss_pred eeeeeEEEEEecCCCCcccceeecc-CCCCCcceeecc
Q psy6861 131 RLEDIFEVVYAAGTDEQYLAFKPVT-AVPFEPKFIDIS 167 (559)
Q Consensus 131 ried~~~vt~~~~~~~~~~~~e~lt-~~p~~~~~~~i~ 167 (559)
|+||+++||++ |+|+|| .+|.+++.|..-
T Consensus 402 RiED~VlVT~~--------G~e~LT~~~pk~~~~iE~~ 431 (438)
T PRK10879 402 RIEDDIVITET--------GNENLTASVVKKPDEIEAL 431 (438)
T ss_pred EeccEEEECCC--------cCeEcCccCCCCHHHHHHH
Confidence 99999999998 799999 589998766543
No 21
>cd01091 CDC68-like Related to aminopeptidase P and aminopeptidase M, a member of this domain family is present in cell division control protein 68, a transcription factor.
Probab=99.94 E-value=2.2e-26 Score=227.01 Aligned_cols=136 Identities=17% Similarity=0.185 Sum_probs=117.4
Q ss_pred CCceEEEEEEEEcC-ccceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhc----CCCC
Q psy6861 3 NTGLFRLILARIDG-TTDVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLWKLG----RDYP 77 (559)
Q Consensus 3 ~~~~~~~~G~~~~G-~aD~tRT~~vG~~~~~~~~~~~~~~~a~~~~~~~~~~~G~~~~~i~~~~~~~~~~~g----~~~~ 77 (559)
++.++.++|++|+| |+|+||||++| |+++|+++|+.+++++.+++.+ ++||+++++|++++++++++.+ .++.
T Consensus 91 ~~~vl~d~G~~y~gY~sditRT~~v~-p~~~~~~~y~~~~~a~~~~i~~-lkpG~~~~dv~~~a~~~i~~~~~~~~~~~~ 168 (243)
T cd01091 91 FGVIICSLGARYKSYCSNIARTFLID-PTSEQQKNYNFLLALQEEILKE-LKPGAKLSDVYQKTLDYIKKKKPELEPNFT 168 (243)
T ss_pred CCEEEEEeCcccCCEeecceEEEEcC-CCHHHHHHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHHHHHhChhHHHhCc
Confidence 46667799999999 99999999997 7999999999999998776555 5679999999999999998854 4678
Q ss_pred CCceecCCCCCCCCCCcccccCCCcccccccccccceEeCCCCccc-cCc---------ccceeeeeeEEEEEecCCCCc
Q psy6861 78 HGTGHGIGAFSSVHECTISFVQNNTDIYSSILTKVILLLSPEPGYY-KED---------EFGIRLEDIFEVVYAAGTDEQ 147 (559)
Q Consensus 78 ~~~GHgiGl~~~~hE~P~~~~~~~~~~~~~~~l~~GMV~tiEP~i~-~~g---------~~giried~~~vt~~~~~~~~ 147 (559)
|++|||||+ ++||.|.+++++++ .+|++||||+||||+| .++ .+|+|+||+++||++
T Consensus 169 ~~~GHgiGl--e~hE~~~~l~~~~~-----~~L~~GMvf~vepGi~~~~~~~~~~~~~~~~gv~ieDtV~Vt~~------ 235 (243)
T cd01091 169 KNLGFGIGL--EFRESSLIINAKND-----RKLKKGMVFNLSIGFSNLQNPEPKDKESKTYALLLSDTILVTED------ 235 (243)
T ss_pred CCcccccCc--ccccCccccCCCCC-----CCcCCCCEEEEeCCcccccCccccCccCCeeEEEEEEEEEEcCC------
Confidence 999999999 99998866665544 3699999999999999 443 579999999999997
Q ss_pred ccce-eecc
Q psy6861 148 YLAF-KPVT 155 (559)
Q Consensus 148 ~~~~-e~lt 155 (559)
|+ |.||
T Consensus 236 --G~~~~LT 242 (243)
T cd01091 236 --EPAIVLT 242 (243)
T ss_pred --CCceecC
Confidence 57 8887
No 22
>PLN03158 methionine aminopeptidase; Provisional
Probab=99.94 E-value=4.5e-26 Score=237.78 Aligned_cols=148 Identities=14% Similarity=0.128 Sum_probs=125.3
Q ss_pred CCCceEEEEEEEEcC-ccceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhcCCC-CCC
Q psy6861 2 ENTGLFRLILARIDG-TTDVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLWKLGRDY-PHG 79 (559)
Q Consensus 2 ~~~~~~~~~G~~~~G-~aD~tRT~~vG~~~~~~~~~~~~~~~a~~~~~~~~~~~G~~~~~i~~~~~~~~~~~g~~~-~~~ 79 (559)
+||.|.+++|++++| ++|++|||++|+++++++++|+++++++.+++. +++||++++||++++++++.++|+.. .++
T Consensus 220 ~GDiV~iDvg~~~~GY~aD~tRT~~VG~~~~e~~~l~e~~~eal~~aI~-~vkPGv~~~dI~~~i~~~~~~~G~~~v~~~ 298 (396)
T PLN03158 220 DGDIVNVDVTVYYKGCHGDLNETFFVGNVDEASRQLVKCTYECLEKAIA-IVKPGVRYREVGEVINRHATMSGLSVVKSY 298 (396)
T ss_pred CCCEEEEEEeEEECCEEEeEEeEEEcCCCCHHHHHHHHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHHcCCCccCCc
Confidence 689999999999999 999999999999999999999999999876655 44579999999999999999988754 688
Q ss_pred ceecCCCCCCCCCCcccccCCCcccccccccccceEeCCCCcccc-----------------CcccceeeeeeEEEEEec
Q psy6861 80 TGHGIGAFSSVHECTISFVQNNTDIYSSILTKVILLLSPEPGYYK-----------------EDEFGIRLEDIFEVVYAA 142 (559)
Q Consensus 80 ~GHgiGl~~~~hE~P~~~~~~~~~~~~~~~l~~GMV~tiEP~i~~-----------------~g~~giried~~~vt~~~ 142 (559)
+|||||+ .+||.|.+.+..... ...+|+|||||||||++|. +|..++++|++++||++
T Consensus 299 ~GHGIG~--~~He~P~i~~~~~~~--~~~~l~~GMVfTIEP~i~~g~~~~~~~~d~wt~~t~dG~~~aq~E~tvlVTe~- 373 (396)
T PLN03158 299 CGHGIGE--LFHCAPNIPHYARNK--AVGVMKAGQVFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTET- 373 (396)
T ss_pred cCCcccc--ccCCCCCCCcccCCC--CCCEecCCcEEEECCeeccCcccceecCCCceEEecCCceeeEeeeEEEEeCC-
Confidence 9999999 999999764322211 1247999999999999985 24456789999999998
Q ss_pred CCCCcccceeeccC-CCCCcc
Q psy6861 143 GTDEQYLAFKPVTA-VPFEPK 162 (559)
Q Consensus 143 ~~~~~~~~~e~lt~-~p~~~~ 162 (559)
|+|.||. .|..+.
T Consensus 374 -------G~EiLT~~~~~~~~ 387 (396)
T PLN03158 374 -------GVEVLTARLPSSPD 387 (396)
T ss_pred -------cceECCCCCCCCcc
Confidence 7999995 666655
No 23
>cd01086 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=99.93 E-value=1.2e-25 Score=222.34 Aligned_cols=143 Identities=17% Similarity=0.079 Sum_probs=122.7
Q ss_pred CCCCceEEEEEEEEcC-ccceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhcCC-CCC
Q psy6861 1 CENTGLFRLILARIDG-TTDVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLWKLGRD-YPH 78 (559)
Q Consensus 1 ~~~~~~~~~~G~~~~G-~aD~tRT~~vG~~~~~~~~~~~~~~~a~~~~~~~~~~~G~~~~~i~~~~~~~~~~~g~~-~~~ 78 (559)
.+||.+++++|+.++| ++|++|||++|+|+++|+++|+.+++++.+++.++ +||++++|+++++++++++.|.. +.+
T Consensus 77 ~~Gd~v~id~g~~~~GY~ad~~RT~~~G~~~~~~~~~~~~~~~~~~~~~~~~-~pG~~~~~v~~~~~~~~~~~G~~~~~~ 155 (238)
T cd01086 77 KDGDIVNIDVGVELDGYHGDSARTFIVGEVSEEAKKLVEVTEEALYKGIEAV-KPGNRIGDIGHAIEKYAEKNGYSVVRE 155 (238)
T ss_pred CCCCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHcCcceecC
Confidence 3689999999999999 99999999999999999999999999988766555 56999999999999999998864 468
Q ss_pred CceecCCCCCCCCCCcccccCCCcccccccccccceEeCCCCcccc-----------------CcccceeeeeeEEEEEe
Q psy6861 79 GTGHGIGAFSSVHECTISFVQNNTDIYSSILTKVILLLSPEPGYYK-----------------EDEFGIRLEDIFEVVYA 141 (559)
Q Consensus 79 ~~GHgiGl~~~~hE~P~~~~~~~~~~~~~~~l~~GMV~tiEP~i~~-----------------~g~~giried~~~vt~~ 141 (559)
++|||||+ .+||.|.+..... .....+|++||||++||++|. +|.+|+|+||+++||++
T Consensus 156 ~~GHgiG~--~~~e~p~~~~~~~--~~~~~~le~Gmv~~iep~i~~~~~~~~~~~~~~~~~~~~g~~g~~~edtv~Vte~ 231 (238)
T cd01086 156 FGGHGIGR--KFHEEPQIPNYGR--PGTGPKLKPGMVFTIEPMINLGTYEVVTLPDGWTVVTKDGSLSAQFEHTVLITED 231 (238)
T ss_pred ccccCCCC--ccccCCCcCCccC--CCCCCEecCCCEEEEeeEEECCCCceEECCCCCEEEcCCCCEEEeeeeEEEEcCC
Confidence 89999999 8999996542111 112357999999999999996 56789999999999998
Q ss_pred cCCCCcccceeeccC
Q psy6861 142 AGTDEQYLAFKPVTA 156 (559)
Q Consensus 142 ~~~~~~~~~~e~lt~ 156 (559)
|+|.||.
T Consensus 232 --------G~e~Lt~ 238 (238)
T cd01086 232 --------GPEILTL 238 (238)
T ss_pred --------cceeCCC
Confidence 6899973
No 24
>PRK12896 methionine aminopeptidase; Reviewed
Probab=99.92 E-value=4.2e-25 Score=220.71 Aligned_cols=143 Identities=19% Similarity=0.138 Sum_probs=122.5
Q ss_pred CCCceEEEEEEEEcC-ccceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhcCC-CCCC
Q psy6861 2 ENTGLFRLILARIDG-TTDVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLWKLGRD-YPHG 79 (559)
Q Consensus 2 ~~~~~~~~~G~~~~G-~aD~tRT~~vG~~~~~~~~~~~~~~~a~~~~~~~~~~~G~~~~~i~~~~~~~~~~~g~~-~~~~ 79 (559)
+||.|++++|+.++| ++|++|||++|+|+++++++|+.+++++.+++.++ +||+++++|++++++++++.|+. +.|+
T Consensus 93 ~Gd~v~iD~g~~~~gY~aD~~RT~~vG~~~~~~~~~~~~~~~a~~~~~~~~-kpG~~~~~v~~~~~~~~~~~G~~~~~~~ 171 (255)
T PRK12896 93 DGDLVNIDVSAYLDGYHGDTGITFAVGPVSEEAEKLCRVAEEALWAGIKQV-KAGRPLNDIGRAIEDFAKKNGYSVVRDL 171 (255)
T ss_pred CCCEEEEEEeEEECcEEEeeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHcCCEeccCc
Confidence 589999999999999 99999999999999999999999999988776655 56999999999999999998864 5688
Q ss_pred ceecCCCCCCCCCCcccccCCCcccccccccccceEeCCCCccc-----------------cCcccceeeeeeEEEEEec
Q psy6861 80 TGHGIGAFSSVHECTISFVQNNTDIYSSILTKVILLLSPEPGYY-----------------KEDEFGIRLEDIFEVVYAA 142 (559)
Q Consensus 80 ~GHgiGl~~~~hE~P~~~~~~~~~~~~~~~l~~GMV~tiEP~i~-----------------~~g~~giried~~~vt~~~ 142 (559)
+|||||+ .+||.|.++..... ...+.+|++||||++||++| .++.+|+|+||+++||++
T Consensus 172 ~GHgiG~--~~he~p~~~~~~~~-~~~~~~le~GmV~~iEp~i~~g~~~~~~~~~~~~~~~~~~~~~~~~edtv~vt~~- 247 (255)
T PRK12896 172 TGHGVGR--SLHEEPSVILTYTD-PLPNRLLRPGMTLAVEPFLNLGAKDAETLDDGWTVVTPDKSLSAQFEHTVVVTRD- 247 (255)
T ss_pred ccCCcCc--ccccCCCccccCCC-CCCCCEecCCcEEEEeceEEcCCCceEEcCCCCEEEecCCCeEEEEEEEEEEcCC-
Confidence 9999999 99999954432111 11235799999999999998 357789999999999998
Q ss_pred CCCCcccceeeccC
Q psy6861 143 GTDEQYLAFKPVTA 156 (559)
Q Consensus 143 ~~~~~~~~~e~lt~ 156 (559)
|+|.||.
T Consensus 248 -------G~e~Lt~ 254 (255)
T PRK12896 248 -------GPEILTD 254 (255)
T ss_pred -------cceecCC
Confidence 6899984
No 25
>PRK13607 proline dipeptidase; Provisional
Probab=99.92 E-value=4.7e-25 Score=235.18 Aligned_cols=143 Identities=22% Similarity=0.285 Sum_probs=116.5
Q ss_pred CCCceEEEEEEEEcC-ccceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHH----h----
Q psy6861 2 ENTGLFRLILARIDG-TTDVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLWK----L---- 72 (559)
Q Consensus 2 ~~~~~~~~~G~~~~G-~aD~tRT~~vG~~~~~~~~~~~~~~~a~~~~~~~~~~~G~~~~~i~~~~~~~~~~----~---- 72 (559)
+||.|++++|+.++| ++|+||||+ |+++.+++++|+++++++.+++.++ +||+++.||+.++++++.+ +
T Consensus 239 ~Gd~vliD~Ga~~~GY~sDiTRTf~-g~~~~~~~~ly~~v~~aq~aai~~i-kPG~~~~dv~~aa~~~i~~~L~~~Gl~~ 316 (443)
T PRK13607 239 EMRSFLIDAGAEYNGYAADITRTYA-AKEDNDFAALIKDVNKEQLALIATM-KPGVSYVDLHIQMHQRIAKLLRKFQIVT 316 (443)
T ss_pred CCCEEEEEeeEEECCEEecceEEEe-cCCCHHHHHHHHHHHHHHHHHHHHc-cCCCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 578889999999999 999999999 8899999999999999987765555 5699999999999887743 2
Q ss_pred ----------c---CCCCCCceecCCCCCCCCCCcccccC----------CCcccccccccccceEeCCCCccccCc---
Q psy6861 73 ----------G---RDYPHGTGHGIGAFSSVHECTISFVQ----------NNTDIYSSILTKVILLLSPEPGYYKED--- 126 (559)
Q Consensus 73 ----------g---~~~~~~~GHgiGl~~~~hE~P~~~~~----------~~~~~~~~~~l~~GMV~tiEP~i~~~g--- 126 (559)
| .+++|++|||||+ ++||.+..... ........++|+||||||||||+|+++
T Consensus 317 g~~~~~~~~~g~~~~~f~HglGH~iGl--dvHd~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~GmV~TvEPGiY~~~~ll 394 (443)
T PRK13607 317 GLSEEAMVEQGITSPFFPHGLGHPLGL--QVHDVAGFMQDDRGTHLAAPEKHPYLRCTRVLEPGMVLTIEPGLYFIDSLL 394 (443)
T ss_pred CCCHHHHHhCCCceEecCCCccCccCc--ccccCCCcccccccccccccccccccccCCcCCCCcEEEECCeeeeChhhh
Confidence 1 3579999999999 99998521100 000011236899999999999999974
Q ss_pred ----------------------ccceeeeeeEEEEEecCCCCcccceeeccC
Q psy6861 127 ----------------------EFGIRLEDIFEVVYAAGTDEQYLAFKPVTA 156 (559)
Q Consensus 127 ----------------------~~giried~~~vt~~~~~~~~~~~~e~lt~ 156 (559)
.|||||||+++||++ |+|+||.
T Consensus 395 ~~~~~~~~~~~in~~~i~~~~~~GGvRIED~vlVT~~--------G~e~Lt~ 438 (443)
T PRK13607 395 APLREGPFSKHFNWQKIDALKPFGGIRIEDNVVVHEN--------GVENMTR 438 (443)
T ss_pred chhhhhhhhhhccHHHHHhhcCCCEEeecceEEEcCC--------CCeECCh
Confidence 579999999999998 6899984
No 26
>cd01092 APP-like Similar to Prolidase and Aminopeptidase P. The members of this subfamily presumably catalyse hydrolysis of Xaa-Pro dipeptides and/or release of any N-terminal amino acid, including proline, that is linked with proline.
Probab=99.91 E-value=3.7e-24 Score=207.09 Aligned_cols=132 Identities=27% Similarity=0.351 Sum_probs=118.7
Q ss_pred CCCCceEEEEEEEEcC-ccceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhcC--CCC
Q psy6861 1 CENTGLFRLILARIDG-TTDVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLWKLGR--DYP 77 (559)
Q Consensus 1 ~~~~~~~~~~G~~~~G-~aD~tRT~~vG~~~~~~~~~~~~~~~a~~~~~~~~~~~G~~~~~i~~~~~~~~~~~g~--~~~ 77 (559)
++||.+++++|+.++| ++|++|||++|+|+++++++|+.+++++..++. +.+||++++||+++++++++++|. ++.
T Consensus 72 ~~gd~v~id~g~~~~gy~~d~~RT~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~pG~~~~di~~~~~~~~~~~g~~~~~~ 150 (208)
T cd01092 72 EEGDLVLIDFGAIYDGYCSDITRTVAVGEPSDELKEIYEIVLEAQQAAIK-AVKPGVTAKEVDKAARDVIEEAGYGEYFI 150 (208)
T ss_pred CCCCEEEEEeeeeECCEeccceeEEECCCCCHHHHHHHHHHHHHHHHHHH-HcCCCCcHHHHHHHHHHHHHHcCccccCC
Confidence 3689999999999999 999999999999999999999999999876655 545799999999999999999886 678
Q ss_pred CCceecCCCCCCCCCCcccccCCCcccccccccccceEeCCCCccccCcccceeeeeeEEEEEe
Q psy6861 78 HGTGHGIGAFSSVHECTISFVQNNTDIYSSILTKVILLLSPEPGYYKEDEFGIRLEDIFEVVYA 141 (559)
Q Consensus 78 ~~~GHgiGl~~~~hE~P~~~~~~~~~~~~~~~l~~GMV~tiEP~i~~~g~~giried~~~vt~~ 141 (559)
|++|||||+ ..||.|.+ .++++ ..|++||||+|||++|.++.+|+|+||+++||++
T Consensus 151 ~~~Gh~iG~--~~~e~p~i-~~~~~-----~~l~~gmv~~iep~~~~~~~~g~~~ed~v~vt~~ 206 (208)
T cd01092 151 HRTGHGVGL--EVHEAPYI-SPGSD-----DVLEEGMVFTIEPGIYIPGKGGVRIEDDVLVTED 206 (208)
T ss_pred CCCccccCc--ccCcCCCc-CCCCC-----CCcCCCCEEEECCeEEecCCCEEEeeeEEEECCC
Confidence 999999999 99999964 44433 4699999999999999999999999999999886
No 27
>PRK14575 putative peptidase; Provisional
Probab=99.91 E-value=4.6e-23 Score=218.81 Aligned_cols=228 Identities=15% Similarity=0.107 Sum_probs=158.1
Q ss_pred HHHHHHHHHHhCCCCEEEEcccchhhhhcCccCCCCCC-CcceeEEEEEeCC-e-EE-EEecCCccCHHHHHhhcccCCC
Q psy6861 316 KFERVRRILRSVDCDALIVTALDEIAWLLNIRAWDLPH-SPFLRAYLAITES-Q-VY-LYTDEKKLSNAVRMYLHIDSCT 391 (559)
Q Consensus 316 Ri~rlr~~m~~~~~dalilt~~dni~yltn~rg~di~~-~Pv~~~~llv~~~-~-~~-lfv~~~~~~~~~~~~l~~~~~~ 391 (559)
-++|+|+.|+++|+|++++++++|++||||+....+.+ .|...+.++|+.+ + +. ++++..+......+.... .
T Consensus 12 ~~~rlr~~m~~~glD~lvl~~p~n~~ylTG~~~~~~~~~r~~~~~~lvv~~~~~~p~~~i~p~~E~~~~~~~~~~~---~ 88 (406)
T PRK14575 12 VSRKLRTIMERDNIDAVIVTTCDNFYHVTGILSFFMYTFRNTGTAIAVVFRDVKIPSLIIMNEFEAASLTLDMPNA---E 88 (406)
T ss_pred HHHHHHHHHHHcCCCEEeecCcchheeecccccccceecccCCceEEEEEcCCCCCceEEechhhhhhhccccccc---c
Confidence 47899999999999999999999999999999764333 3333356788766 3 45 777766544432111100 0
Q ss_pred CCcceEEE----ec------------------h----hHHHHHHhhccCCCEEEEcCCCCcccchhHHHHHHcCCCCeec
Q psy6861 392 SPLCVRVK----EY------------------E----KVWNDLRNIGLYWNRIWLPSQIAYSAGVSKAITTLFSPDKRYA 445 (559)
Q Consensus 392 ~~~~v~v~----~y------------------~----~~~~~L~~l~~~~~~I~id~~~~~~~~~~~~l~~~l~~~~~v~ 445 (559)
......+. ++ + .+.+.|++....+++||+|.+. ++......+...++...+++
T Consensus 89 ~~~~~~~~d~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~igve~~~-~~~~~~~~l~~~lp~~~~~d 167 (406)
T PRK14575 89 LKTFPVWVDVDDPFNMRDSANNNKERPIGPPIESVCNILKDALNDARVLNKKIAIDLNI-MSNGGKRVIDAVMPNVDFVD 167 (406)
T ss_pred cccCCceEeeeccccccchhhhhhcCCCCCCHHHHHHHHHHHHHhcCCcCCEEEEccCC-CCHHHHHHHHHhCCCCeEEE
Confidence 00001111 11 2 2224444433335799999886 22222223334455566788
Q ss_pred CCChhHHHHhcCCHHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCcCHHHHHHHHHHHHHhcCCCCCCCcccccccCC
Q psy6861 446 APSPIIEMKAQKNDVEIKGMHEAHIRDAVIFCDAMAFVEDQYFRGEDITETSVAHILDSHRTENTISRGISFESIVAYGE 525 (559)
Q Consensus 446 ~~~~i~~lRaiKn~~EI~~~R~A~i~d~~Al~~~~~~l~~~l~~G~~~tE~ei~~~l~~~r~~~~g~~~~sf~tIva~G~ 525 (559)
..+.+..+|+|||+.||+.||+|..+...++.+++ +.+++| +||.|+++.+.+.. ...|....++.+++++|+
T Consensus 168 ~~~~l~~lR~iKs~~EI~~~r~A~~i~~~a~~~~~----~~i~pG--~tE~elaa~~~~~~-~~~g~~~~~~~~~v~~G~ 240 (406)
T PRK14575 168 SSSIFNELRVIKSPWEIKRLRKSAEITEYGITEAS----KLIRVG--CTSAELTAAYKAAV-MSKSETHFSRFHLISVGA 240 (406)
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH----HhccCC--CCHHHHHHHHHHHH-HHcCCCcCCcCceEEECC
Confidence 88899999999999999999999766666766655 669999 99999999997763 344444444447888999
Q ss_pred CCccccccCCCCCCceecCCCcEEEecCccccc
Q psy6861 526 HAALPHYTPSNATNVVVRGDAPLLVDSGGHYMV 558 (559)
Q Consensus 526 n~A~~Hy~~~~~t~~~i~~gd~vliDsG~~Y~~ 558 (559)
+ +.||+.|+ ++++++||+|++|+|+.|+.
T Consensus 241 ~-~~~h~~~~---~~~l~~Gd~v~iD~g~~~~G 269 (406)
T PRK14575 241 D-FSPKLIPS---NTKACSGDLIKFDCGVDVDG 269 (406)
T ss_pred C-cccCCCCC---CCcCCCCCEEEEEeceEECC
Confidence 8 57999998 99999999999999998864
No 28
>PRK14576 putative endopeptidase; Provisional
Probab=99.90 E-value=7.5e-23 Score=217.12 Aligned_cols=230 Identities=14% Similarity=0.063 Sum_probs=156.9
Q ss_pred HHHHHHHHHhCCCCEEEEcccchhhhhcCccCCCCCCC-cceeEEEEEeCC--eE-EEEecCCccCHHHHH----hhccc
Q psy6861 317 FERVRRILRSVDCDALIVTALDEIAWLLNIRAWDLPHS-PFLRAYLAITES--QV-YLYTDEKKLSNAVRM----YLHID 388 (559)
Q Consensus 317 i~rlr~~m~~~~~dalilt~~dni~yltn~rg~di~~~-Pv~~~~llv~~~--~~-~lfv~~~~~~~~~~~----~l~~~ 388 (559)
.+|+|+.|+++|+|++++++++||+||||+....+.+. +....+++++.+ ++ .++++..+....... .+...
T Consensus 13 ~~r~r~~M~~~gldalll~~p~ni~YlTG~~~~~~~~~r~~~~~v~v~~~d~~~p~~~i~~~~e~~~~~~~~~~~~~~~~ 92 (405)
T PRK14576 13 SRKARVVMEREGIDALVVTVCDNFYYLTGFASFFMYTFRHTGAAVAIMFRDANIPSQIIMNEFEAASTHFDMPNSVLKTF 92 (405)
T ss_pred HHHHHHHHHHcCCCEEEeccccceeeeccccccceeeeccCCeEEEEecCCCCCCcEEEechhhhhhhhccccccccccC
Confidence 46899999999999999999999999999997643333 433455555544 24 667766543332100 11100
Q ss_pred CCCCC--cce-EEEe-----------c----hhHHHHHHhhccCCCEEEEcCCCCcccchhHHHHHHcCCCCeecCCChh
Q psy6861 389 SCTSP--LCV-RVKE-----------Y----EKVWNDLRNIGLYWNRIWLPSQIAYSAGVSKAITTLFSPDKRYAAPSPI 450 (559)
Q Consensus 389 ~~~~~--~~v-~v~~-----------y----~~~~~~L~~l~~~~~~I~id~~~~~~~~~~~~l~~~l~~~~~v~~~~~i 450 (559)
..+.+ ... .+.. . +.+.+.|+++...+.+||+|.+. ++......+...++..++++..+.+
T Consensus 93 ~~~~d~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~rigve~~~-~~~~~~~~l~~~~~~~~~vd~~~~l 171 (405)
T PRK14576 93 PVWVDVDDPRNPHHHYKKRDRPIGPPVEAVFSLVKNALEDAGVLDKTIAIELQA-MSNGGKGVLDKVAPGLKLVDSTALF 171 (405)
T ss_pred CceEeecCCcccchhhhccccCCCCcHHHHHHHHHHHHHHhCCCCCEEEEccCC-CCHHHHHHHHhhCCCCeEEEcHHHH
Confidence 00000 000 0000 0 22334555554445799999876 2222222344455666778888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCcCHHHHHHHHHHHHHhcCCCCCCCcccccccCCCCccc
Q psy6861 451 IEMKAQKNDVEIKGMHEAHIRDAVIFCDAMAFVEDQYFRGEDITETSVAHILDSHRTENTISRGISFESIVAYGEHAALP 530 (559)
Q Consensus 451 ~~lRaiKn~~EI~~~R~A~i~d~~Al~~~~~~l~~~l~~G~~~tE~ei~~~l~~~r~~~~g~~~~sf~tIva~G~n~A~~ 530 (559)
.++|+|||+.||+.||+|..+.+.++.+++ +.+++| +||.|++..+.... ...|....++.+++++|+| +.|
T Consensus 172 ~~lR~iKs~~EI~~~r~A~~i~~~~~~~~~----~~i~pG--~tE~elaa~~~~~~-~~~g~~~~~~~~~v~~G~~-~~~ 243 (405)
T PRK14576 172 NEIRMIKSPWEIEHLRKSAEITEYGIASAA----KKIRVG--CTAAELTAAFKAAV-MSFPETNFSRFNLISVGDN-FSP 243 (405)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHH----HhccCC--CCHHHHHHHHHHHH-HHcCCCcCCCCCEEEECCc-ccC
Confidence 999999999999999999766666766655 669999 99999999998864 4445333444489999999 479
Q ss_pred cccCCCCCCceecCCCcEEEecCccccc
Q psy6861 531 HYTPSNATNVVVRGDAPLLVDSGGHYMV 558 (559)
Q Consensus 531 Hy~~~~~t~~~i~~gd~vliDsG~~Y~~ 558 (559)
|+.|+ ++++++||++++|+|+.|+.
T Consensus 244 h~~~~---~~~l~~Gd~v~~d~g~~~~G 268 (405)
T PRK14576 244 KIIAD---TTPAKVGDLIKFDCGIDVAG 268 (405)
T ss_pred CCCCC---CcccCCCCEEEEEeceeECC
Confidence 99998 89999999999999999864
No 29
>KOG2414|consensus
Probab=99.88 E-value=6.2e-23 Score=204.75 Aligned_cols=144 Identities=26% Similarity=0.335 Sum_probs=120.7
Q ss_pred CCceEEEEEEEEcC-ccceeeEEEc-CCCCHHHHHHHHHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHHH----hc--
Q psy6861 3 NTGLFRLILARIDG-TTDVSRTLHL-GSPTREQVEAYSRTLLGMIRLATAVFPA-HLHSNQLDILARAPLWK----LG-- 73 (559)
Q Consensus 3 ~~~~~~~~G~~~~G-~aD~tRT~~v-G~~~~~~~~~~~~~~~a~~~~~~~~~~~-G~~~~~i~~~~~~~~~~----~g-- 73 (559)
++-|+.+.||.++| ++|+||||++ |++|+-|+++|++++..+.+.+...+++ |.+.++++......+.+ .|
T Consensus 307 ~emVLvDaGcelgGYvSDITRTWP~sGkFs~~Qr~LYeavL~vq~ecik~c~~~~g~sL~~l~~~s~~Ll~~~Lk~lGI~ 386 (488)
T KOG2414|consen 307 DEMVLVDAGCELGGYVSDITRTWPISGKFSDAQRDLYEAVLQVQEECIKYCKPSNGTSLSQLFERSNELLGQELKELGIR 386 (488)
T ss_pred CcEEEEecCcccCceEccceeccCCCCccCcHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHhCcc
Confidence 46677799999999 9999999999 9999999999999999988876666543 79999999887666644 33
Q ss_pred -----------CCCCCCceecCCCCCCCCCCcccccCCCcccccccccccceEeCCCCccccCcc---------cceeee
Q psy6861 74 -----------RDYPHGTGHGIGAFSSVHECTISFVQNNTDIYSSILTKVILLLSPEPGYYKEDE---------FGIRLE 133 (559)
Q Consensus 74 -----------~~~~~~~GHgiGl~~~~hE~P~~~~~~~~~~~~~~~l~~GMV~tiEP~i~~~g~---------~girie 133 (559)
..++|+.||-+|| ++||.|-. +.+ ..|+||||||||||+|+|.+ -|+|||
T Consensus 387 kt~~ee~~~~~klcPHhVgHyLGm--DVHD~p~v--~r~------~pL~pg~ViTIEPGvYIP~d~d~P~~FrGIGiRIE 456 (488)
T KOG2414|consen 387 KTDREEMIQAEKLCPHHVGHYLGM--DVHDCPTV--SRD------IPLQPGMVITIEPGVYIPEDDDPPEEFRGIGIRIE 456 (488)
T ss_pred cchHHHHHhhhhcCCcccchhcCc--ccccCCCC--CCC------ccCCCCceEEecCceecCccCCCchHhcCceEEee
Confidence 2468999999999 99999953 232 25999999999999999853 499999
Q ss_pred eeEEEEEecCCCCcccceeecc-CCCCCccee
Q psy6861 134 DIFEVVYAAGTDEQYLAFKPVT-AVPFEPKFI 164 (559)
Q Consensus 134 d~~~vt~~~~~~~~~~~~e~lt-~~p~~~~~~ 164 (559)
|+|+|+++ |.|+|| .+|.|+..|
T Consensus 457 DDV~i~ed--------g~evLT~a~pKei~~i 480 (488)
T KOG2414|consen 457 DDVAIGED--------GPEVLTAACPKEIIEI 480 (488)
T ss_pred cceEeccC--------CceeehhcccCCHHHH
Confidence 99999998 579999 788887654
No 30
>PF00557 Peptidase_M24: Metallopeptidase family M24 This Prosite entry corresponds to sub-family M24B This Prosite entry corresponds to sub-families M24A and M24C; InterPro: IPR000994 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains proteins that belong to MEROPS peptidase family M24 (clan MG), which share a common structural-fold, the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. The entry also contains proteins that have lost catalytic activity, for example Spt16, which is a component of the FACT complex. The crystal structure of the N-terminal domain of Spt16, determined to 2.1A, reveals an aminopeptidase P fold whose enzymatic activity has been lost. This fold binds directly to histones H3-H4 through a interaction with their globular core domains, as well as with their N-terminal tails []. The FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p (P32558 from SWISSPROT, IPR013953 from INTERPRO) and Pob3p (Q04636 from SWISSPROT, IPR000969 from INTERPRO). The complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin []; it also facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, , ]. ; GO: 0009987 cellular process; PDB: 4A6V_B 4A6W_A 3CTZ_A 3IG4_B 2B3H_A 2NQ6_A 2NQ7_A 2GZ5_A 2G6P_A 2B3L_A ....
Probab=99.88 E-value=1.4e-22 Score=195.93 Aligned_cols=130 Identities=29% Similarity=0.386 Sum_probs=112.8
Q ss_pred CCCceEEEEEEEEcC-ccceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhcC--CCCC
Q psy6861 2 ENTGLFRLILARIDG-TTDVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLWKLGR--DYPH 78 (559)
Q Consensus 2 ~~~~~~~~~G~~~~G-~aD~tRT~~vG~~~~~~~~~~~~~~~a~~~~~~~~~~~G~~~~~i~~~~~~~~~~~g~--~~~~ 78 (559)
+||.|++++|+.++| ++|++||+++| |+++|+++|+.+++++..++..+ +||++++|+++++++.++++|+ .++|
T Consensus 73 ~gd~v~id~~~~~~gy~~d~~Rt~~~G-~~~~~~~~~~~~~~~~~~~~~~~-~pG~~~~~v~~~~~~~~~~~g~~~~~~~ 150 (207)
T PF00557_consen 73 EGDIVIIDFGPRYDGYHADIARTFVVG-PTPEQRRAYEAAREALEAAIEAL-RPGVTGSDVYEAVREVLEEYGLEEPYPH 150 (207)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEEEESS-SHHHHHHHHHHHHHHHHHHHHH--STTSBHHHHHHHHHHHHHHTTEGEEBTS
T ss_pred cCCcceeeccceeeeeEeeeeeEEEEe-ecccccchhhhhHHHHHhHhhhc-ccccccchhhHHHHHHHHhhcccceeee
Confidence 689999999999999 99999999999 99999999999999887665555 5699999999999999999886 6789
Q ss_pred CceecCCCCCCCCCC-cccccCCCcccccccccccceEeCCCCccc-cCcccceeeeeeEEEEE
Q psy6861 79 GTGHGIGAFSSVHEC-TISFVQNNTDIYSSILTKVILLLSPEPGYY-KEDEFGIRLEDIFEVVY 140 (559)
Q Consensus 79 ~~GHgiGl~~~~hE~-P~~~~~~~~~~~~~~~l~~GMV~tiEP~i~-~~g~~giried~~~vt~ 140 (559)
.+|||||+ .+||. |++.+.+++ .+|++||||++||+++ .++.+|+++||+++||+
T Consensus 151 ~~GH~iG~--~~~~~~P~i~~~~~~-----~~l~~gmv~~iep~~~~~~~~~g~~~ed~v~Vte 207 (207)
T PF00557_consen 151 GLGHGIGL--EFHEPGPNIARPGDD-----TVLEPGMVFAIEPGLYFIPGWGGVRFEDTVLVTE 207 (207)
T ss_dssp SSEEEESS--SSSEEEEEESSTTTS-----SB--TTBEEEEEEEEEEETTSEEEEEBEEEEEES
T ss_pred cccccccc--cccccceeeeccccc-----ceecCCCceeEeeeEEccCCCcEEEEEEEEEECc
Confidence 99999999 99997 975323333 4799999999999998 67889999999999985
No 31
>KOG2737|consensus
Probab=99.87 E-value=1.3e-22 Score=200.25 Aligned_cols=157 Identities=22% Similarity=0.242 Sum_probs=128.7
Q ss_pred CCceEEEEEEEEcC-ccceeeEEEc-CCCCHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHH----h----
Q psy6861 3 NTGLFRLILARIDG-TTDVSRTLHL-GSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLWK----L---- 72 (559)
Q Consensus 3 ~~~~~~~~G~~~~G-~aD~tRT~~v-G~~~~~~~~~~~~~~~a~~~~~~~~~~~G~~~~~i~~~~~~~~~~----~---- 72 (559)
||..++++|+.|.+ .+|||++|+. |+++++|+.+|++|+.++.++..++ +||+.+-|++..+.+++-+ .
T Consensus 269 gd~cLfDmGaey~~yaSDITcsFP~nGKFTadqk~VYnaVLda~navm~a~-KpGv~W~Dmh~La~kvlle~laq~gIl~ 347 (492)
T KOG2737|consen 269 GDLCLFDMGAEYHFYASDITCSFPVNGKFTADQKLVYNAVLDASNAVMEAM-KPGVWWVDMHKLAEKVLLEHLAQMGILK 347 (492)
T ss_pred CCEEEEecCcceeeeecccceeccCCCccchhHHHHHHHHHHHHHHHHHhc-CCCCccccHHHHHHHHHHHHHHhcCcee
Confidence 66777899999999 9999999999 9999999999999999877665555 5699999999999887754 1
Q ss_pred -----------c-CCCCCCceecCCCCCCCCCCcccc-cCCC------cccccccccccceEeCCCCcccc---------
Q psy6861 73 -----------G-RDYPHGTGHGIGAFSSVHECTISF-VQNN------TDIYSSILTKVILLLSPEPGYYK--------- 124 (559)
Q Consensus 73 -----------g-~~~~~~~GHgiGl~~~~hE~P~~~-~~~~------~~~~~~~~l~~GMV~tiEP~i~~--------- 124 (559)
| ..++|++||-+|+ ++|+..-.. .... ...+..+.|++|||+|+|||+|+
T Consensus 348 gdvd~m~~ar~~~vF~PHGLGH~lGl--DvHDvGGyp~~~~rp~~P~l~~LR~aR~L~e~MviTvEPGcYFi~~Ll~eal 425 (492)
T KOG2737|consen 348 GDVDEMVEARLGAVFMPHGLGHFLGL--DVHDVGGYPEGVERPDEPGLRSLRTARHLKEGMVITVEPGCYFIDFLLDEAL 425 (492)
T ss_pred ccHHHHHHhccCeeeccccccccccc--cccccCCCCCCCCCCCcchhhhhhhhhhhhcCcEEEecCChhHHHHHHHHHh
Confidence 1 3469999999999 999964111 1111 11235688999999999999998
Q ss_pred -----------------CcccceeeeeeEEEEEecCCCCcccceeeccCCCCCcceeecccCC
Q psy6861 125 -----------------EDEFGIRLEDIFEVVYAAGTDEQYLAFKPVTAVPFEPKFIDISLFG 170 (559)
Q Consensus 125 -----------------~g~~giried~~~vt~~~~~~~~~~~~e~lt~~p~~~~~~~i~~~D 170 (559)
.+.+|+||||+++||++ |+|+||-+|++...|..-+.-
T Consensus 426 adp~~~~f~n~e~~~rfr~~GGVRIEdDv~vt~~--------G~enlt~vprtveeIEa~ma~ 480 (492)
T KOG2737|consen 426 ADPARAEFLNREVLQRFRGFGGVRIEDDVVVTKS--------GIENLTCVPRTVEEIEACMAG 480 (492)
T ss_pred cChHhhhhhhHHHHHHhhccCceEeeccEEEecc--------ccccccCCCCCHHHHHHHHhc
Confidence 16789999999999998 799999999999888776643
No 32
>cd01066 APP_MetAP A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as metallopeptidase family M24. This family of enzymes is able to cleave amido-, imido- and amidino-containing bonds. Members exibit relatively narrow substrate specificity compared to other metallo-aminopeptidases, suggesting they play roles in regulation of biological processes rather than general protein degradation.
Probab=99.87 E-value=1e-21 Score=188.94 Aligned_cols=131 Identities=27% Similarity=0.410 Sum_probs=117.3
Q ss_pred CCCceEEEEEEEEcC-ccceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhcC--CCCC
Q psy6861 2 ENTGLFRLILARIDG-TTDVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLWKLGR--DYPH 78 (559)
Q Consensus 2 ~~~~~~~~~G~~~~G-~aD~tRT~~vG~~~~~~~~~~~~~~~a~~~~~~~~~~~G~~~~~i~~~~~~~~~~~g~--~~~~ 78 (559)
.||.+++++|+.++| ++|++|||++|+++++++++|+.+.+++..+...+ +||+++.++++++++++++.|. ++.|
T Consensus 72 ~gd~v~~d~g~~~~gy~~d~~rt~~~g~~~~~~~~~~~~~~~~~~~~~~~i-~pG~~~~ei~~~~~~~~~~~g~~~~~~~ 150 (207)
T cd01066 72 EGDLVLVDLGGVYDGYHADLTRTFVIGEPSDEQRELYEAVREAQEAALAAL-RPGVTAEEVDAAAREVLEEHGLGPNFGH 150 (207)
T ss_pred CCCEEEEEeceeECCCccceeceeEcCCCCHHHHHHHHHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHHcCccccCCC
Confidence 589999999999999 99999999999999999999999999877665554 5699999999999999999886 5789
Q ss_pred CceecCCCCCCCCCCcccccCCCcccccccccccceEeCCCCccccCcccceeeeeeEEEEEe
Q psy6861 79 GTGHGIGAFSSVHECTISFVQNNTDIYSSILTKVILLLSPEPGYYKEDEFGIRLEDIFEVVYA 141 (559)
Q Consensus 79 ~~GHgiGl~~~~hE~P~~~~~~~~~~~~~~~l~~GMV~tiEP~i~~~g~~giried~~~vt~~ 141 (559)
++|||||+ ..||.|. +.+... .+|++||||++||++|.++.+|+++||+++||++
T Consensus 151 ~~Gh~iG~--~~~e~~~-~~~~~~-----~~l~~gmv~~iep~~~~~~~~g~~~ed~v~vt~~ 205 (207)
T cd01066 151 RTGHGIGL--EIHEPPV-LKAGDD-----TVLEPGMVFAVEPGLYLPGGGGVRIEDTVLVTED 205 (207)
T ss_pred CCccccCc--ccCCCCC-cCCCCC-----CCcCCCCEEEECCEEEECCCcEEEeeeEEEEeCC
Confidence 99999999 9999996 344433 4699999999999999987899999999999986
No 33
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4. Family members have been implicated in cell cycle control.
Probab=99.87 E-value=7.5e-22 Score=193.76 Aligned_cols=132 Identities=14% Similarity=0.082 Sum_probs=112.2
Q ss_pred CCCceEEEEEEEEcC-ccceeeEEEcCCCCH-----HHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhcC-
Q psy6861 2 ENTGLFRLILARIDG-TTDVSRTLHLGSPTR-----EQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLWKLGR- 74 (559)
Q Consensus 2 ~~~~~~~~~G~~~~G-~aD~tRT~~vG~~~~-----~~~~~~~~~~~a~~~~~~~~~~~G~~~~~i~~~~~~~~~~~g~- 74 (559)
+||+|++++|+.++| ++|++|||++|+|++ +++++|+++++++.+++.++ +||++++||+++++++++++|.
T Consensus 85 ~Gd~v~iD~g~~~~GY~sD~tRT~~vG~~~~~~~~~~~~~~~~~~~ea~~~~~~~~-kpG~~~~dv~~a~~~~~~~~G~~ 163 (228)
T cd01089 85 DGDVVKIDLGCHIDGYIAVVAHTIVVGAEAETPVTGKKADVIAAAHYALEAALRLL-RPGNQNSDITEAIQKVIVDYGCT 163 (228)
T ss_pred CCCEEEEEEEEEECCEEEEEEEEEEeCCcCccccchHHHHHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHHHHcCCE
Confidence 689999999999999 999999999999885 89999999999988766655 5699999999999999999984
Q ss_pred ----CCCCCceecCCCCCCCCCCcccccCCCcccccccccccceEeCCCCccccCcccceeeeeeEEEEEecCCCCcccc
Q psy6861 75 ----DYPHGTGHGIGAFSSVHECTISFVQNNTDIYSSILTKVILLLSPEPGYYKEDEFGIRLEDIFEVVYAAGTDEQYLA 150 (559)
Q Consensus 75 ----~~~~~~GHgiGl~~~~hE~P~~~~~~~~~~~~~~~l~~GMV~tiEP~i~~~g~~giried~~~vt~~~~~~~~~~~ 150 (559)
+..|++|||+ ..|+.+..+ ...|++||||++||+++.+|.+++++||+++||++ |
T Consensus 164 ~~~~~~~h~~g~~~----~~~~~~~~~---------~~~l~~gmvf~~ep~~~~~g~~~~~~~~Tv~vt~~--------G 222 (228)
T cd01089 164 PVEGVLSHQLKRVV----SSGEGKAKL---------VECVKHGLLFPYPVLYEKEGEVVAQFKLTVLLTPN--------G 222 (228)
T ss_pred EecCccccCcCceE----ecCCCCccc---------hhhccCCcccccceeEccCCCeEEEEEEEEEEcCC--------C
Confidence 3355666643 446655211 13699999999999999999999999999999998 6
Q ss_pred eeecc
Q psy6861 151 FKPVT 155 (559)
Q Consensus 151 ~e~lt 155 (559)
+|.||
T Consensus 223 ~e~lt 227 (228)
T cd01089 223 VTVLT 227 (228)
T ss_pred CeeCC
Confidence 89987
No 34
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=4.9e-21 Score=186.40 Aligned_cols=151 Identities=19% Similarity=0.124 Sum_probs=121.4
Q ss_pred CCCceEEEEEEEEcC-ccceeeEEEcCCCC-HHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhcCCC-CC
Q psy6861 2 ENTGLFRLILARIDG-TTDVSRTLHLGSPT-REQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLWKLGRDY-PH 78 (559)
Q Consensus 2 ~~~~~~~~~G~~~~G-~aD~tRT~~vG~~~-~~~~~~~~~~~~a~~~~~~~~~~~G~~~~~i~~~~~~~~~~~g~~~-~~ 78 (559)
+||.|-+++|+.++| ++|.++||.||+.+ +..++|.+++++++.+++.++ +||+++.+|.++++++++++|+.. ..
T Consensus 89 ~GDiv~IDvg~~~dG~~~Dsa~T~~vg~~~~~~~~~L~~~t~eal~~~I~~v-kpG~~l~~Ig~aIq~~~~~~G~~vVr~ 167 (255)
T COG0024 89 EGDIVKIDVGAHIDGYIGDTAITFVVGEVSDEDAKRLLEATKEALYAGIEAV-KPGARLGDIGRAIQEYAESRGFSVVRN 167 (255)
T ss_pred CCCEEEEEEEEEECCeeeeEEEEEECCCCChHHHHHHHHHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHHHcCCEEeec
Confidence 689999999999999 99999999999766 477779999999988777655 569999999999999999999754 67
Q ss_pred CceecCCCCCCCCCCcccccCCCcccccccccccceEeCCCCccccCcccceee-e-eeEE-EEEecCCCCcc-------
Q psy6861 79 GTGHGIGAFSSVHECTISFVQNNTDIYSSILTKVILLLSPEPGYYKEDEFGIRL-E-DIFE-VVYAAGTDEQY------- 148 (559)
Q Consensus 79 ~~GHgiGl~~~~hE~P~~~~~~~~~~~~~~~l~~GMV~tiEP~i~~~g~~giri-e-d~~~-vt~~~~~~~~~------- 148 (559)
.+|||||. .+||.|++++++... ....|+|||||||||++.. |.+.++. . |-+. ++.+++.++||
T Consensus 168 ~~GHgig~--~~He~p~ip~y~~~~--~~~~l~~Gmv~aIEPmi~~-G~~~~~~~~~d~Wt~~t~d~~~~aq~EHTv~Vt 242 (255)
T COG0024 168 LTGHGIGR--ELHEEPSIPNYGKDG--TGVRLKEGMVFAIEPMINT-GSGEVVEGPSDRWTLVTKDGSLSAQFEHTVIVT 242 (255)
T ss_pred ccCCccCc--ccCCCCeeccccCCC--CCcccCCCCEEEEeeEEEc-CCCceEecCCCCeEEEeCCCCEEeEEEEEEEEe
Confidence 89999999 999999887755432 2358999999999999986 4444333 2 3233 33355667777
Q ss_pred -cceeeccCCC
Q psy6861 149 -LAFKPVTAVP 158 (559)
Q Consensus 149 -~~~e~lt~~p 158 (559)
.|+|.||..+
T Consensus 243 ~~g~eilT~~~ 253 (255)
T COG0024 243 EDGCEILTLRP 253 (255)
T ss_pred CCCcEEeeCCC
Confidence 6889998654
No 35
>PRK10879 proline aminopeptidase P II; Provisional
Probab=99.84 E-value=1.5e-20 Score=201.02 Aligned_cols=229 Identities=18% Similarity=0.231 Sum_probs=158.7
Q ss_pred CccHHHHHHHHHHHHHhCCCCEEEEccc----------------chhhhhcCccCCCCCCCcceeEEEEEeC-C----eE
Q psy6861 310 GESYQNKFERVRRILRSVDCDALIVTAL----------------DEIAWLLNIRAWDLPHSPFLRAYLAITE-S----QV 368 (559)
Q Consensus 310 g~~~~~Ri~rlr~~m~~~~~dalilt~~----------------dni~yltn~rg~di~~~Pv~~~~llv~~-~----~~ 368 (559)
.+++..|++++.+.|.+.. .+|+.+. .|+.||||+.-.+ +++++.. + +.
T Consensus 3 ~~~~~~rR~~l~~~~~~~~--~~v~~~~~~~~~~~d~~y~Frq~s~F~YltG~~ep~--------~~lv~~~~~~~~~~~ 72 (438)
T PRK10879 3 QQEFQRRRQALLAKMQPGS--AALIFAAPEATRSADSEYPYRQNSDFWYFTGFNEPE--------AVLVLIKSDDTHNHS 72 (438)
T ss_pred hHHHHHHHHHHHhhCCCCc--EEEEeCCCccccCCCCCCCccCCCceeeeeCCCCCC--------eEEEEecCCCCCCeE
Confidence 4578899999999997633 4444443 3889999987544 5666532 2 36
Q ss_pred EEEecCCccCHHHHHh--hcccCCCCCcce-EEEechhHHHHHHhhccCCCEEEEcCCC-CcccchhHHHHHHcC-----
Q psy6861 369 YLYTDEKKLSNAVRMY--LHIDSCTSPLCV-RVKEYEKVWNDLRNIGLYWNRIWLPSQI-AYSAGVSKAITTLFS----- 439 (559)
Q Consensus 369 ~lfv~~~~~~~~~~~~--l~~~~~~~~~~v-~v~~y~~~~~~L~~l~~~~~~I~id~~~-~~~~~~~~~l~~~l~----- 439 (559)
+||+++.....+++.- ++........++ ++.+++++.+.|.++......+..+... ...........+.+.
T Consensus 73 ~Lf~~~~d~~~e~W~G~~~~~~~a~~~~g~d~v~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (438)
T PRK10879 73 VLFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALPFSEINQQLYQLLNGLDVVYHAQGEYAYADEIVFSALEKLRKGSRQ 152 (438)
T ss_pred EEEeCCCCCCccEEcCcCCCHHHHHHHhCCCEEeeHHHHHHHHHHHhcCCceEEecCCccccchhHHHHHHHHHHhhhcc
Confidence 8999876544332210 000000001233 4778899999998876544556655332 000001112222221
Q ss_pred ----CCCeecCCChhHHHHhcCCHHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCcCHHHHHHHHHHHHHhcCCCCCC
Q psy6861 440 ----PDKRYAAPSPIIEMKAQKNDVEIKGMHEAHIRDAVIFCDAMAFVEDQYFRGEDITETSVAHILDSHRTENTISRGI 515 (559)
Q Consensus 440 ----~~~~v~~~~~i~~lRaiKn~~EI~~~R~A~i~d~~Al~~~~~~l~~~l~~G~~~tE~ei~~~l~~~r~~~~g~~~~ 515 (559)
...+++....+..+|+|||++||+.||+|+.+.+.|+.+++ +.+++| +||.|+++.+.+. ....|...+
T Consensus 153 ~~~~~~~~~d~~~~l~~lR~iKs~~EI~~~r~A~~i~~~a~~~~~----~~~~pG--~tE~ei~a~~~~~-~~~~G~~~~ 225 (438)
T PRK10879 153 NLTAPATLTDWRPWVHEMRLFKSPEEIAVLRRAGEISALAHTRAM----EKCRPG--MFEYQLEGEIHHE-FNRHGARYP 225 (438)
T ss_pred ccCCcccchHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH----HhcCCC--CcHHHHHHHHHHH-HHHCCCCCC
Confidence 12234455678899999999999999999888888888777 458999 9999999998886 456788888
Q ss_pred CcccccccCCCCccccccCCCCCCceecCCCcEEEecCccccc
Q psy6861 516 SFESIVAYGEHAALPHYTPSNATNVVVRGDAPLLVDSGGHYMV 558 (559)
Q Consensus 516 sf~tIva~G~n~A~~Hy~~~~~t~~~i~~gd~vliDsG~~Y~~ 558 (559)
+|++|+++|+|++.+||.|+ +++|++||+|++|+|+.|+.
T Consensus 226 ~~~~iv~~G~na~~~H~~~~---~~~l~~GDlVliD~G~~~~G 265 (438)
T PRK10879 226 SYNTIVGSGENGCILHYTEN---ESEMRDGDLVLIDAGCEYKG 265 (438)
T ss_pred CCCcEEEEcCccccccCCCC---ccccCCCCEEEEEeCeEECC
Confidence 99999999999999999998 89999999999999999864
No 36
>KOG2738|consensus
Probab=99.79 E-value=6.9e-19 Score=169.15 Aligned_cols=150 Identities=15% Similarity=0.091 Sum_probs=118.5
Q ss_pred CCCceEEEEEEEEcC-ccceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhcCCC-CCC
Q psy6861 2 ENTGLFRLILARIDG-TTDVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLWKLGRDY-PHG 79 (559)
Q Consensus 2 ~~~~~~~~~G~~~~G-~aD~tRT~~vG~~~~~~~~~~~~~~~a~~~~~~~~~~~G~~~~~i~~~~~~~~~~~g~~~-~~~ 79 (559)
+||.+-+++.++++| ++|+.+||++|+.+++.+++.+...++++.+ +++.+||+++.+|+..++++..++|+.+ ..+
T Consensus 199 dGDIvNiDVtvY~~GyHGDlneTffvG~Vde~~k~LVkvT~EcL~ka-I~~~kpGv~freiG~iI~kha~~~g~sVVr~y 277 (369)
T KOG2738|consen 199 DGDIVNIDVTVYLNGYHGDLNETFFVGNVDEKAKKLVKVTRECLEKA-IAIVKPGVSFREIGNIIQKHATKNGYSVVRSY 277 (369)
T ss_pred CCCEEeEEEEEEeccccCccccceEeeccCHHHHHHHHHHHHHHHHH-HHHhCCchhHHHHHHHHHHHhhhcCceeehhh
Confidence 689999999999999 9999999999999999999999999987765 5555679999999999999999999974 678
Q ss_pred ceecCCCCCCCCCCcccccCCCcccccccccccceEeCCCCccccCcccceeeeeeEE-EEEecCCCCcc--------cc
Q psy6861 80 TGHGIGAFSSVHECTISFVQNNTDIYSSILTKVILLLSPEPGYYKEDEFGIRLEDIFE-VVYAAGTDEQY--------LA 150 (559)
Q Consensus 80 ~GHgiGl~~~~hE~P~~~~~~~~~~~~~~~l~~GMV~tiEP~i~~~g~~giried~~~-vt~~~~~~~~~--------~~ 150 (559)
+|||||- -+|-.|.+.++.+.. ...++.+||+|||||++...+.--+.--|++. +|.++..++|| -|
T Consensus 278 cGHGig~--~FH~~PnipHya~n~--a~GvM~~G~tFTIEPmit~G~~~d~tWPD~WT~vTaDG~~sAQFEhTlLVT~tG 353 (369)
T KOG2738|consen 278 CGHGIGR--VFHCAPNIPHYAKNK--APGVMKPGQTFTIEPMITIGTWEDITWPDDWTAVTADGKRSAQFEHTLLVTETG 353 (369)
T ss_pred hcccccc--ccccCCCchhhcccC--CcceeecCceEEeeeeecccccccccCCCCceEEecCCceecceeeEEEEeccc
Confidence 9999999 899999776544321 23579999999999999873222222223333 23344445555 48
Q ss_pred eeeccC
Q psy6861 151 FKPVTA 156 (559)
Q Consensus 151 ~e~lt~ 156 (559)
+|.||.
T Consensus 354 ~EILT~ 359 (369)
T KOG2738|consen 354 CEILTK 359 (369)
T ss_pred ceehhc
Confidence 999994
No 37
>PRK08671 methionine aminopeptidase; Provisional
Probab=99.74 E-value=1.7e-17 Score=168.38 Aligned_cols=123 Identities=15% Similarity=0.102 Sum_probs=101.4
Q ss_pred CCCceEEEEEEEEcC-ccceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhcC-CCCCC
Q psy6861 2 ENTGLFRLILARIDG-TTDVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLWKLGR-DYPHG 79 (559)
Q Consensus 2 ~~~~~~~~~G~~~~G-~aD~tRT~~vG~~~~~~~~~~~~~~~a~~~~~~~~~~~G~~~~~i~~~~~~~~~~~g~-~~~~~ 79 (559)
+||.|.+++|+.++| ++|++||+++| ++++++++++.+|+.+++..+ +||++++||+++++++++++|+ .+.|+
T Consensus 74 ~GDvV~iD~G~~~dGY~aD~arT~~vG---~~~~~l~~a~~~a~~aai~~i-kpG~~~~dv~~~i~~vi~~~G~~~~~~~ 149 (291)
T PRK08671 74 EGDVVKLDLGAHVDGYIADTAVTVDLG---GKYEDLVEASEEALEAAIEVV-RPGVSVGEIGRVIEETIRSYGFKPIRNL 149 (291)
T ss_pred CCCEEEEEEeEEECCEEEEEEEEEEeC---hhHHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHcCCcccCCC
Confidence 689999999999999 99999999999 478899999999988766555 5699999999999999999986 45689
Q ss_pred ceecCCCCCCCCCCcccccCCCcccccccccccceEeCCCCccccCcccceeee
Q psy6861 80 TGHGIGAFSSVHECTISFVQNNTDIYSSILTKVILLLSPEPGYYKEDEFGIRLE 133 (559)
Q Consensus 80 ~GHgiGl~~~~hE~P~~~~~~~~~~~~~~~l~~GMV~tiEP~i~~~g~~girie 133 (559)
+|||||++ .+||.|.+.+... ....+|++||||+|||++. .|.+.++-.
T Consensus 150 ~GHgiG~~-~~he~p~ip~~~~---~~~~~le~GmV~aIEp~~t-~G~G~v~~~ 198 (291)
T PRK08671 150 TGHGLERY-ELHAGPSIPNYDE---GGGVKLEEGDVYAIEPFAT-DGEGKVVEG 198 (291)
T ss_pred cccCcCCC-cccCCCccCccCC---CCCceeCCCCEEEEcceEE-CCCCeEecC
Confidence 99999974 7999986532211 1235799999999999876 466666533
No 38
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=99.72 E-value=2.9e-17 Score=173.25 Aligned_cols=121 Identities=9% Similarity=-0.049 Sum_probs=98.5
Q ss_pred CCCceEEEEEEEEcC-ccceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhcC-----C
Q psy6861 2 ENTGLFRLILARIDG-TTDVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLWKLGR-----D 75 (559)
Q Consensus 2 ~~~~~~~~~G~~~~G-~aD~tRT~~vG~~~~~~~~~~~~~~~a~~~~~~~~~~~G~~~~~i~~~~~~~~~~~g~-----~ 75 (559)
+||.|.+++|+.++| ++|++|||++| ++++++++++++|+.+++.+++ ||++++||+++++++++++|+ +
T Consensus 236 ~GDvVkID~G~~vdGYiaD~ArTv~vg---~~~~~L~eAv~eA~~aaI~~~k-pGv~~~dI~~AIqevies~G~e~~Gk~ 311 (470)
T PTZ00053 236 YDDVCKLDFGTHVNGRIIDCAFTVAFN---PKYDPLLQATKDATNTGIKEAG-IDVRLSDIGAAIQEVIESYEVEIKGKT 311 (470)
T ss_pred CCCeEEEEEeEEECCEEEeEEEEEEeC---HHHHHHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHHcCCcccCcc
Confidence 589999999999999 99999999997 6889999999999887766665 699999999999999999884 2
Q ss_pred -----CCCCceecCCCCCCCCCCcccccCCCcccccccccccceEeCCCCccccCccccee
Q psy6861 76 -----YPHGTGHGIGAFSSVHECTISFVQNNTDIYSSILTKVILLLSPEPGYYKEDEFGIR 131 (559)
Q Consensus 76 -----~~~~~GHgiGl~~~~hE~P~~~~~~~~~~~~~~~l~~GMV~tiEP~i~~~g~~gir 131 (559)
+.|++|||||+| .+|+.|.++.... .....|++||||+|||.+.. |.+-++
T Consensus 312 f~~k~I~nltGHgIG~y-~iHe~k~iP~v~~---~~~~~LeeGmVfaIEPf~st-G~G~v~ 367 (470)
T PTZ00053 312 YPIKSIRNLNGHSIGPY-IIHGGKSVPIVKG---GENTRMEEGELFAIETFAST-GRGYVN 367 (470)
T ss_pred cccccccCCcccCCCCc-cccCCCcCCeeCC---CCCCEecCCCEEEEcceeeC-CCCeEe
Confidence 379999999975 7999664322111 12347999999999999874 544443
No 39
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=99.71 E-value=4.8e-17 Score=165.18 Aligned_cols=123 Identities=11% Similarity=0.007 Sum_probs=100.8
Q ss_pred CCCceEEEEEEEEcC-ccceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhcCC-CCCC
Q psy6861 2 ENTGLFRLILARIDG-TTDVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLWKLGRD-YPHG 79 (559)
Q Consensus 2 ~~~~~~~~~G~~~~G-~aD~tRT~~vG~~~~~~~~~~~~~~~a~~~~~~~~~~~G~~~~~i~~~~~~~~~~~g~~-~~~~ 79 (559)
+||.|.+++|+.++| ++|++|||++|+ +++++++++++|+.+++..+ +||++++||+++++++++++|+. +.|+
T Consensus 73 ~GDvV~iD~G~~~dGY~sD~arT~~vg~---~~~~l~ea~~~A~~~ai~~i-kPG~~~~dV~~ai~~~i~~~G~~~~~~~ 148 (291)
T cd01088 73 EGDVVKLDFGAHVDGYIADSAFTVDFDP---KYDDLLEAAKEALNAAIKEA-GPDVRLGEIGEAIEEVIESYGFKPIRNL 148 (291)
T ss_pred CCCEEEEEEEEEECCEEEEEEEEEecCh---hHHHHHHHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHHcCCEEeecC
Confidence 689999999999999 999999999985 78899999999988766555 56999999999999999999863 5789
Q ss_pred ceecCCCCCCCCCCcccccCCCcccccccccccceEeCCCCccccCcccceeee
Q psy6861 80 TGHGIGAFSSVHECTISFVQNNTDIYSSILTKVILLLSPEPGYYKEDEFGIRLE 133 (559)
Q Consensus 80 ~GHgiGl~~~~hE~P~~~~~~~~~~~~~~~l~~GMV~tiEP~i~~~g~~girie 133 (559)
+|||||.+ ..|+.|.++..... ...+|++||||+|||++. .|.+.++-+
T Consensus 149 ~GHgig~~-~~h~~~~ip~~~~~---~~~~le~gmV~aIEp~~s-~G~G~v~~~ 197 (291)
T cd01088 149 TGHSIERY-RLHAGKSIPNVKGG---EGTRLEEGDVYAIEPFAT-TGKGYVHDG 197 (291)
T ss_pred CccCccCc-cccCCCccCccCCC---CCCEeCCCCEEEEceeEE-CCCCeeecC
Confidence 99999953 79998754222111 235799999999999764 577777644
No 40
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=99.70 E-value=6.6e-17 Score=164.24 Aligned_cols=123 Identities=12% Similarity=0.065 Sum_probs=99.6
Q ss_pred CCCceEEEEEEEEcC-ccceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhcC-CCCCC
Q psy6861 2 ENTGLFRLILARIDG-TTDVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLWKLGR-DYPHG 79 (559)
Q Consensus 2 ~~~~~~~~~G~~~~G-~aD~tRT~~vG~~~~~~~~~~~~~~~a~~~~~~~~~~~G~~~~~i~~~~~~~~~~~g~-~~~~~ 79 (559)
+||.|.+++|+.++| ++|++|||++|++ ++++++++.+|+.+++..+ +||++++||+++++++++++|+ .+.|+
T Consensus 77 ~GDvV~iD~G~~~dGY~aD~arT~~vG~~---~~~l~~a~~~A~~aai~~~-kPGv~~~dV~~ai~~vi~~~G~~~i~~~ 152 (295)
T TIGR00501 77 DGDVVKLDLGAHVDGYIADTAITVDLGDQ---YDNLVKAAKDALYTAIKEI-RAGVRVGEIGKAIQEVIESYGVKPISNL 152 (295)
T ss_pred CCCEEEEEEeEEECCEEEEEEEEEEeCcH---HHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHcCCeeecCC
Confidence 689999999999999 9999999999953 7899999999987765555 5699999999999999999886 45789
Q ss_pred ceecCCCCCCCCCCcccc--cCCCcccccccccccceEeCCCCccccCcccceeeeee
Q psy6861 80 TGHGIGAFSSVHECTISF--VQNNTDIYSSILTKVILLLSPEPGYYKEDEFGIRLEDI 135 (559)
Q Consensus 80 ~GHgiGl~~~~hE~P~~~--~~~~~~~~~~~~l~~GMV~tiEP~i~~~g~~giried~ 135 (559)
+|||||.+ ..|++|.+. ..++ ..+|++||||+|||++. .|.|.++-.+.
T Consensus 153 ~GHgig~~-~~h~g~~ip~i~~~~-----~~~le~GmV~aIEP~~~-~G~G~v~~~~~ 203 (295)
T TIGR00501 153 TGHSMAPY-RLHGGKSIPNVKERD-----TTKLEEGDVVAIEPFAT-DGVGYVTDGGE 203 (295)
T ss_pred CCcceecc-cccCCCccCeecCCC-----CCEeCCCCEEEEceeEE-CCcCeEecCCC
Confidence 99999963 789875332 2222 35799999999999754 57666655443
No 41
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=99.70 E-value=1e-16 Score=168.00 Aligned_cols=130 Identities=12% Similarity=0.001 Sum_probs=107.9
Q ss_pred CCCceEEEEEEEEcC-ccceeeEEEcCC-----CCHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhcCC
Q psy6861 2 ENTGLFRLILARIDG-TTDVSRTLHLGS-----PTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLWKLGRD 75 (559)
Q Consensus 2 ~~~~~~~~~G~~~~G-~aD~tRT~~vG~-----~~~~~~~~~~~~~~a~~~~~~~~~~~G~~~~~i~~~~~~~~~~~g~~ 75 (559)
+||.|.+++|+.++| ++|++|||++|+ ++++++++++++++|+.+++..+ +||++++||+.+++++++++|+.
T Consensus 103 ~GDvVkIDlG~~idGY~aD~arTv~vG~~~~~~~t~~~~~l~~aa~~A~~aai~~v-kPG~~~~dI~~ai~~v~~~~G~~ 181 (389)
T TIGR00495 103 EGDVVKIDLGCHIDGFIALVAHTFVVGVAQEEPVTGRKADVIAAAHLAAEAALRLV-KPGNTNTQVTEAINKVAHSYGCT 181 (389)
T ss_pred CCCEEEEEEEEEECCEEEEEEEEEEECCcccccCCHHHHHHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHHHHcCCe
Confidence 689999999999999 999999999995 47889999999999988776655 56999999999999999999975
Q ss_pred -CCCCceecCCCCCCCCC-Ccccc-cCCCc--ccccccccccceEeCCCCccccCcccceeeeee
Q psy6861 76 -YPHGTGHGIGAFSSVHE-CTISF-VQNNT--DIYSSILTKVILLLSPEPGYYKEDEFGIRLEDI 135 (559)
Q Consensus 76 -~~~~~GHgiGl~~~~hE-~P~~~-~~~~~--~~~~~~~l~~GMV~tiEP~i~~~g~~giried~ 135 (559)
+.+.+|||||. .+|| .|.++ +++.. ....+..|++||||+|||++.. |.+.++..++
T Consensus 182 ~v~~~~gH~igr--~~~~g~~~Ii~~~~~~~~~~~~~~~le~gev~aIEp~vs~-G~g~v~~~~~ 243 (389)
T TIGR00495 182 PVEGMLSHQLKQ--HVIDGEKVIISNPSDSQKKDHDTAEFEENEVYAVDILVST-GEGKAKDADQ 243 (389)
T ss_pred ecCCceeecccc--eeccCCCeeeecCCccccCCCCCCEecCCCEEEEeeeecC-CCceEEECCC
Confidence 56789999999 8888 77643 33211 1123468999999999999985 7777887764
No 42
>PRK13607 proline dipeptidase; Provisional
Probab=99.67 E-value=9.3e-16 Score=163.94 Aligned_cols=102 Identities=24% Similarity=0.280 Sum_probs=85.7
Q ss_pred CCChhHHHHhcCCHHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCcCHHHHHHHHHHHHHhcCCCCCCCcccccccCC
Q psy6861 446 APSPIIEMKAQKNDVEIKGMHEAHIRDAVIFCDAMAFVEDQYFRGEDITETSVAHILDSHRTENTISRGISFESIVAYGE 525 (559)
Q Consensus 446 ~~~~i~~lRaiKn~~EI~~~R~A~i~d~~Al~~~~~~l~~~l~~G~~~tE~ei~~~l~~~r~~~~g~~~~sf~tIva~G~ 525 (559)
....+..+|+|||++||+.||+|+.+.+.|+.+++ +.+++| +||.|+...+... ...+..+.+|++|+++|+
T Consensus 151 l~~~l~~lR~iKs~~EI~~mr~A~~i~~~a~~~~~----~~i~pG--~tE~ei~~~~~~~--~~~~~~~~~y~~iva~G~ 222 (443)
T PRK13607 151 VLDYLHYHRAYKTDYELACMREAQKIAVAGHRAAK----EAFRAG--MSEFDINLAYLTA--TGQRDNDVPYGNIVALNE 222 (443)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH----HHhhcC--CCHHHHHHHHHHH--hCCCCcCCCCCcEEEecC
Confidence 34578899999999999999999877777766655 668999 9999999876543 344556689999999999
Q ss_pred CCccccccCCCCCC-ceecCCCcEEEecCccccc
Q psy6861 526 HAALPHYTPSNATN-VVVRGDAPLLVDSGGHYMV 558 (559)
Q Consensus 526 n~A~~Hy~~~~~t~-~~i~~gd~vliDsG~~Y~~ 558 (559)
|++++||.++ + +.+++||+|++|+|+.|++
T Consensus 223 naa~~H~~~~---~~~~~~~Gd~vliD~Ga~~~G 253 (443)
T PRK13607 223 HAAVLHYTKL---DHQAPAEMRSFLIDAGAEYNG 253 (443)
T ss_pred cceEecCCcc---CCCCCCCCCEEEEEeeEEECC
Confidence 9999999998 5 4689999999999999864
No 43
>KOG2737|consensus
Probab=99.65 E-value=1.4e-15 Score=150.90 Aligned_cols=232 Identities=17% Similarity=0.227 Sum_probs=148.3
Q ss_pred cccccccCccHHHHHHHHHHHHHh--CCCCE---EEEccc-----------------chhhhhcCccCCCCCCCcceeEE
Q psy6861 303 IIQNEIAGESYQNKFERVRRILRS--VDCDA---LIVTAL-----------------DEIAWLLNIRAWDLPHSPFLRAY 360 (559)
Q Consensus 303 ~~~~~~~g~~~~~Ri~rlr~~m~~--~~~da---lilt~~-----------------dni~yltn~rg~di~~~Pv~~~~ 360 (559)
.+|.+.-...+..+..+||..+-. +.+|+ +++... .-++||+|.+- |-+|+.
T Consensus 11 ~vP~~lf~~nr~rl~~~lr~k~~~~nr~~~~~s~vllqgGeE~nrYctD~~~lFrQesYF~~lfGV~e------p~~yg~ 84 (492)
T KOG2737|consen 11 LVPMELFAGNRKRLLEALRKKLLSSNRSLDGGSFVLLQGGEEKNRYCTDTTELFRQESYFAYLFGVRE------PGFYGA 84 (492)
T ss_pred eecHHHhhcchHHHHHHHHhhcccccccccCceEEEEecchhhcccccchHHHHhhhhHHHHhhcCCC------ccceEE
Confidence 355555556666677777776651 12333 333332 25788888874 445555
Q ss_pred EEEeCCeEEEEecCCccCHHHHHhhcccCC----CCCcceEEEec-hhHHHHHHhhccCCCEEEEcCCCCcccchhHHHH
Q psy6861 361 LAITESQVYLYTDEKKLSNAVRMYLHIDSC----TSPLCVRVKEY-EKVWNDLRNIGLYWNRIWLPSQIAYSAGVSKAIT 435 (559)
Q Consensus 361 llv~~~~~~lfv~~~~~~~~~~~~l~~~~~----~~~~~v~v~~y-~~~~~~L~~l~~~~~~I~id~~~~~~~~~~~~l~ 435 (559)
.=+..++.+||+|+..-+.+ .|.+.... .....|+-.-| +++...++.. +.++..+... .+...-
T Consensus 85 idv~tgKstLFvPrlp~~ya--~W~G~i~~l~~fke~y~VDev~yvde~~~~~~~~---~~k~l~~l~g-----~nTDsg 154 (492)
T KOG2737|consen 85 IDVGTGKSTLFVPRLPDSYA--TWMGEILSLQHFKEKYAVDEVFYVDEIIQVLKGS---KPKLLYLLRG-----LNTDSG 154 (492)
T ss_pred EEecCCceEEEecCCChhhc--eeccccCCHHHHHHHhhhhheeehHhHHHHhhcc---Cccceeeeec-----cccCcc
Confidence 55566799999998543222 22220000 00011222222 3344444322 1233332111 111111
Q ss_pred HHcCC------CCeecCC----ChhHHHHhcCCHHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCcCHHHHHHHHHHH
Q psy6861 436 TLFSP------DKRYAAP----SPIIEMKAQKNDVEIKGMHEAHIRDAVIFCDAMAFVEDQYFRGEDITETSVAHILDSH 505 (559)
Q Consensus 436 ~~l~~------~~~v~~~----~~i~~lRaiKn~~EI~~~R~A~i~d~~Al~~~~~~l~~~l~~G~~~tE~ei~~~l~~~ 505 (559)
..+.+ .++.... ..+...|.||++.||+.||.|+.+.+.|+.++| ..+++| +.|+++...++..
T Consensus 155 ~v~~e~~f~g~~kf~~D~~~lyp~m~E~RviKs~~EieviRya~kISseaH~~vM----~~~~pg--~~Eyq~eslF~hh 228 (492)
T KOG2737|consen 155 NVLKEASFAGISKFETDLTLLYPILAECRVIKSSLEIEVIRYANKISSEAHIEVM----RAVRPG--MKEYQLESLFLHH 228 (492)
T ss_pred cccCcccccchhhcccCchhhhHHHhhheeeCCHHHHHHHHHHHhhccHHHHHHH----HhCCch--HhHHhHHHHHHHh
Confidence 11111 1122112 257799999999999999999988888999988 569999 9999999999887
Q ss_pred HHhcCCCCCCCcccccccCCCCccccc----cCCCCCCceecCCCcEEEecCcccccC
Q psy6861 506 RTENTISRGISFESIVAYGEHAALPHY----TPSNATNVVVRGDAPLLVDSGGHYMVV 559 (559)
Q Consensus 506 r~~~~g~~~~sf~tIva~G~n~A~~Hy----~~~~~t~~~i~~gd~vliDsG~~Y~~~ 559 (559)
-..+.|+...||..|+++|+|+++.|| .|+ ++.|++||+.|+|.|+.|.|.
T Consensus 229 ~y~~GGcRh~sYtcIc~sG~ns~vLHYgha~apN---d~~iqdgd~cLfDmGaey~~y 283 (492)
T KOG2737|consen 229 SYSYGGCRHLSYTCICASGDNSAVLHYGHAGAPN---DRTIQDGDLCLFDMGAEYHFY 283 (492)
T ss_pred hhccCCccccccceeeecCCCcceeeccccCCCC---CcccCCCCEEEEecCcceeee
Confidence 677888899999999999999999999 555 999999999999999999873
No 44
>PRK15173 peptidase; Provisional
Probab=99.65 E-value=1.3e-15 Score=156.91 Aligned_cols=142 Identities=16% Similarity=0.130 Sum_probs=105.4
Q ss_pred HHHHHhhccCCCEEEEcCCCCcccchhHHHHHHcCCCCeecCCChhHHHHhcCCHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy6861 405 WNDLRNIGLYWNRIWLPSQIAYSAGVSKAITTLFSPDKRYAAPSPIIEMKAQKNDVEIKGMHEAHIRDAVIFCDAMAFVE 484 (559)
Q Consensus 405 ~~~L~~l~~~~~~I~id~~~~~~~~~~~~l~~~l~~~~~v~~~~~i~~lRaiKn~~EI~~~R~A~i~d~~Al~~~~~~l~ 484 (559)
.+.|+++....++||+|.+. ++......+...++...+++..+++..+|+|||++||+.||+|..+...++.+++
T Consensus 45 ~~~l~~~g~~~~rigve~~~-~~~~~~~~l~~~l~~~~~~d~~~~i~~lR~iKs~~EI~~mr~A~~i~~~~~~~~~---- 119 (323)
T PRK15173 45 KDALNDARVLNKKIAIDLNI-MSNGGKRVIDAVMPNVDFVDSSSIFNELRVIKSPWEIKRLRKSAEITEYGITEAS---- 119 (323)
T ss_pred HHHHHHcCccCCEEEEecCc-cCHHHHHHHHhhCCCCeEEEhHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHH----
Confidence 34444444445799999886 2222222333444556677888899999999999999999999766666665554
Q ss_pred HhccCCCCcCHHHHHHHHHHHHHhcCCCCCCCcccccccCCCCccccccCCCCCCceecCCCcEEEecCccccc
Q psy6861 485 DQYFRGEDITETSVAHILDSHRTENTISRGISFESIVAYGEHAALPHYTPSNATNVVVRGDAPLLVDSGGHYMV 558 (559)
Q Consensus 485 ~~l~~G~~~tE~ei~~~l~~~r~~~~g~~~~sf~tIva~G~n~A~~Hy~~~~~t~~~i~~gd~vliDsG~~Y~~ 558 (559)
+.+++| +||.|++..+..... ..|....++.+++++|+++ .+|+.|+ ++++++||+|++|+|++|++
T Consensus 120 ~~i~~G--~tE~el~a~~~~~~~-~~g~~~~~~~~~i~~G~~~-~~h~~~~---~~~l~~Gd~V~iD~g~~~~G 186 (323)
T PRK15173 120 KLIRVG--CTSAELTAAYKAAVM-SKSETHFSRFHLISVGADF-SPKLIPS---NTKACSGDLIKFDCGVDVDG 186 (323)
T ss_pred HHccCC--CCHHHHHHHHHHHHH-HcCCCCCCCCcEEEECCCC-ccCCCCC---CCccCCCCEEEEEeCccCCC
Confidence 668999 999999999977643 4444444444678889985 7899888 99999999999999999864
No 45
>KOG2414|consensus
Probab=99.62 E-value=3e-15 Score=150.10 Aligned_cols=246 Identities=17% Similarity=0.205 Sum_probs=161.1
Q ss_pred CCCCCCCCccccccc----cccCccHHHHHHHHHHHHHhCCCCEEEEccc----------------chhhhhcCccCCCC
Q psy6861 292 NRPLYSTHDAFIIQN----EIAGESYQNKFERVRRILRSVDCDALIVTAL----------------DEIAWLLNIRAWDL 351 (559)
Q Consensus 292 ~rP~~~~~~i~~~~~----~~~g~~~~~Ri~rlr~~m~~~~~dalilt~~----------------dni~yltn~rg~di 351 (559)
.+|....+|-.+.|- ..+-.++..|+.||.+.|.++. .+|+++. .|+.||||....|
T Consensus 42 GQpt~~thPhli~pgEltPgis~~Ey~~RR~rl~~ll~~~a--~~il~sap~~~msg~ipY~f~Qd~df~YLtGc~EP~- 118 (488)
T KOG2414|consen 42 GQPTSVTHPHLIQPGELTPGISATEYKERRSRLMSLLPANA--MVILGSAPVKYMSGAIPYTFRQDNDFYYLTGCLEPD- 118 (488)
T ss_pred CCCCCCCCccccCCCCcCCCccHHHHHHHHHHHHHhCCccc--EEEEccCchhhhcCccceeeecCCCeEEEeccCCCC-
Confidence 567766677555543 3456788999999999998754 3444432 3677777766543
Q ss_pred CCCcceeEEEEEe--CC---eEEEEecCCccCHHHHHhhcccCCCCCc---ceEEEechhHHHHHHhhccCCCEEEEcCC
Q psy6861 352 PHSPFLRAYLAIT--ES---QVYLYTDEKKLSNAVRMYLHIDSCTSPL---CVRVKEYEKVWNDLRNIGLYWNRIWLPSQ 423 (559)
Q Consensus 352 ~~~Pv~~~~llv~--~~---~~~lfv~~~~~~~~~~~~l~~~~~~~~~---~v~v~~y~~~~~~L~~l~~~~~~I~id~~ 423 (559)
+.+++. +. ...+|+++..-..+.++-..+..+.... ..+-.+.+++..+|.+......+|+.|..
T Consensus 119 -------~vl~l~~~d~~s~~~~lf~p~kdP~~e~WeG~rtG~~~a~~if~v~ea~~~s~l~~~L~k~~~~~~~i~~d~~ 191 (488)
T KOG2414|consen 119 -------AVLLLLKGDERSVAYDLFMPPKDPTAELWEGPRTGTDGASEIFGVDEAYPLSGLAVFLPKMSALLYKIWQDKA 191 (488)
T ss_pred -------eeEEEeecccccceeeEecCCCCccHHhhcCccccchhhhhhhcchhhcchhhHHHHHHHHHhhhhhhhhhhc
Confidence 555553 22 2568888765444444432211000000 00112234555666665543456777654
Q ss_pred CCcccchhH-HHHHHc---CC-CCeecCCChhHHHHhcCCHHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCcCHHHH
Q psy6861 424 IAYSAGVSK-AITTLF---SP-DKRYAAPSPIIEMKAQKNDVEIKGMHEAHIRDAVIFCDAMAFVEDQYFRGEDITETSV 498 (559)
Q Consensus 424 ~~~~~~~~~-~l~~~l---~~-~~~v~~~~~i~~lRaiKn~~EI~~~R~A~i~d~~Al~~~~~~l~~~l~~G~~~tE~ei 498 (559)
..- +.... .+...+ .+ .++....+.+.++|.||||.|++.||+|+.+.+.++.+.+. .-++. ..|..+
T Consensus 192 ss~-a~s~~~~~~dl~~~~~~~~~~~~~~~li~~lRlIKSpaEl~~Mr~a~~I~sq~~~~~m~----~sr~~--~~E~~l 264 (488)
T KOG2414|consen 192 SSK-ASSALKNMQDLLGFQSKSSTVRPVSNLIERLRLIKSPAELELMREACNIASQTFSETMF----GSRDF--HNEAAL 264 (488)
T ss_pred cch-hhhHHHHHHhhhhhcccCcccccHHHHHHHHHccCCHHHHHHHHHHhhhhhHHHHHHHh----hccCC--cchhhH
Confidence 300 00011 111111 11 22445667999999999999999999998777776655542 12444 789999
Q ss_pred HHHHHHHHHhcCCCCCCCcccccccCCCCccccccCCCCCCceecCCCcEEEecCccccc
Q psy6861 499 AHILDSHRTENTISRGISFESIVAYGEHAALPHYTPSNATNVVVRGDAPLLVDSGGHYMV 558 (559)
Q Consensus 499 ~~~l~~~r~~~~g~~~~sf~tIva~G~n~A~~Hy~~~~~t~~~i~~gd~vliDsG~~Y~~ 558 (559)
.+.+++. .+..|++-..|+++||.|.|+..+||..+ |..|+++|+||+|.||.+.+
T Consensus 265 ~a~~eye-~r~rGad~~AYpPVVAgG~na~tIHY~~N---nq~l~d~emVLvDaGcelgG 320 (488)
T KOG2414|consen 265 SALLEYE-CRRRGADRLAYPPVVAGGKNANTIHYVRN---NQLLKDDEMVLVDAGCELGG 320 (488)
T ss_pred hhhhhhh-eeecCccccccCCeeecCcccceEEEeec---ccccCCCcEEEEecCcccCc
Confidence 9999986 67899999999999999999999999998 99999999999999998864
No 46
>PRK12897 methionine aminopeptidase; Reviewed
Probab=99.44 E-value=3.2e-13 Score=134.37 Aligned_cols=94 Identities=16% Similarity=0.097 Sum_probs=80.6
Q ss_pred hcCCHHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCcCHHHHHHHHHHHHHhcCCCC-----CCCcccccccCCCCcc
Q psy6861 455 AQKNDVEIKGMHEAHIRDAVIFCDAMAFVEDQYFRGEDITETSVAHILDSHRTENTISR-----GISFESIVAYGEHAAL 529 (559)
Q Consensus 455 aiKn~~EI~~~R~A~i~d~~Al~~~~~~l~~~l~~G~~~tE~ei~~~l~~~r~~~~g~~-----~~sf~tIva~G~n~A~ 529 (559)
.|||++||+.||+|+.+...++..++ +.+++| +||.|++..+.+. +...|.. ..+|++++++|+|++.
T Consensus 3 ~iKs~~EI~~~r~A~~i~~~~~~~~~----~~~~~G--~tE~el~~~~~~~-~~~~G~~~~~~~~~~~~~~i~~g~n~~~ 75 (248)
T PRK12897 3 TIKTKNEIDLMHESGKLLASCHREIA----KIMKPG--ITTKEINTFVEAY-LEKHGATSEQKGYNGYPYAICASVNDEM 75 (248)
T ss_pred eeCCHHHHHHHHHHHHHHHHHHHHHH----hhcCCC--CcHHHHHHHHHHH-HHHcCCcccccccCCCCcceEeccCCEe
Confidence 68999999999999766666665544 679999 9999999999887 4566665 2478888999999999
Q ss_pred ccccCCCCCCceecCCCcEEEecCccccc
Q psy6861 530 PHYTPSNATNVVVRGDAPLLVDSGGHYMV 558 (559)
Q Consensus 530 ~Hy~~~~~t~~~i~~gd~vliDsG~~Y~~ 558 (559)
|||.|+ +++|++||+|++|+|++|+.
T Consensus 76 ~H~~p~---~~~l~~Gd~V~iD~g~~~~G 101 (248)
T PRK12897 76 CHAFPA---DVPLTEGDIVTIDMVVNLNG 101 (248)
T ss_pred ecCCCC---CcccCCCCEEEEEeeEEECC
Confidence 999998 99999999999999999864
No 47
>cd01085 APP X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline, even from a dipeptide or tripeptide.
Probab=99.41 E-value=5.8e-13 Score=130.17 Aligned_cols=95 Identities=38% Similarity=0.669 Sum_probs=85.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhccCCCCcCHHHHHHHHHHHHHhcCCCCCCCcccccccCCCCccccccCCCCCCceec
Q psy6861 464 GMHEAHIRDAVIFCDAMAFVEDQYFRGEDITETSVAHILDSHRTENTISRGISFESIVAYGEHAALPHYTPSNATNVVVR 543 (559)
Q Consensus 464 ~~R~A~i~d~~Al~~~~~~l~~~l~~G~~~tE~ei~~~l~~~r~~~~g~~~~sf~tIva~G~n~A~~Hy~~~~~t~~~i~ 543 (559)
+||+|++++++++.+.+.++.+.+++|.++||.||++.+++++....++.+.+|++++++|+|++.|||.|++.++++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~i~~G~~~tE~eiaa~~~~~~~~~g~~~~~~f~~~v~~g~n~~~~H~~p~~~~~r~l~ 80 (224)
T cd01085 1 GMRAAHIRDGVALVEFLAWLEQEVPKGETITELSAADKLEEFRRQQKGYVGLSFDTISGFGPNGAIVHYSPTEESNRKIS 80 (224)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhccCCCEeHHHHHHHHHHHHHHcCCCcCCCcceEEEecCccCcCCCCcCcccCcccC
Confidence 48999999999999999999999999955799999999998765455676789999999999999999999866689999
Q ss_pred CCCcEEEecCccccc
Q psy6861 544 GDAPLLVDSGGHYMV 558 (559)
Q Consensus 544 ~gd~vliDsG~~Y~~ 558 (559)
+||+|++|+|+.|+.
T Consensus 81 ~GD~V~iD~g~~~~g 95 (224)
T cd01085 81 PDGLYLIDSGGQYLD 95 (224)
T ss_pred CCCEEEEEeCccCCC
Confidence 999999999999864
No 48
>PF01321 Creatinase_N: Creatinase/Prolidase N-terminal domain; InterPro: IPR000587 Creatinase or creatine amidinohydrolase (3.5.3.3 from EC) catalyses the conversion of creatine and water to sarcosine and urea. The enzyme works as a homodimer, and is induced by choline chloride. Each monomer of creatinase has two clearly defined domains, a small N-terminal domain, and a large C-terminal domain. The structure of the C-terminal region represents the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. ; GO: 0016787 hydrolase activity; PDB: 1PV9_A 3CTZ_A 3IL0_B 3PN9_A 2HOW_A 1WN1_B 3I7M_A 1CHM_B 3QOC_D 1KP0_B ....
Probab=99.40 E-value=1.5e-12 Score=116.00 Aligned_cols=128 Identities=23% Similarity=0.273 Sum_probs=89.3
Q ss_pred HHHHHHHHHHhCCCCEEEEcccchhhhhcCccCCCCCCCcceeEEEEEeCCeEEEEecCCccCHHHHHhhcccCCCCCcc
Q psy6861 316 KFERVRRILRSVDCDALIVTALDEIAWLLNIRAWDLPHSPFLRAYLAITESQVYLYTDEKKLSNAVRMYLHIDSCTSPLC 395 (559)
Q Consensus 316 Ri~rlr~~m~~~~~dalilt~~dni~yltn~rg~di~~~Pv~~~~llv~~~~~~lfv~~~~~~~~~~~~l~~~~~~~~~~ 395 (559)
|++|+|+.|+++|+|++++++++|++||||++.. +..+ ..+++++.++.++|++.........+.. ..
T Consensus 1 Rl~rl~~~m~~~gid~lll~~~~ni~YltG~~~~--~~~~--~~~l~i~~~~~~l~~~~~~~~~~~~~~~--------~~ 68 (132)
T PF01321_consen 1 RLERLRAAMAEAGIDALLLTSPENIRYLTGFRWQ--PGER--PVLLVITADGAVLFVPKGEYERAAEESA--------PD 68 (132)
T ss_dssp HHHHHHHHHHHTT-SEEEEESHHHHHHHHS--ST---TSS--EEEEEEESSSEEEEEEGGGHHHHHHHHT--------TS
T ss_pred CHHHHHHHHHHCCCCEEEEcChhhceEecCCCcC--CCcc--eEEEEecccCcEEEeccccHHHHHHhhc--------CC
Confidence 8999999999999999999999999999999721 2222 2345588887799999655544433331 23
Q ss_pred eEEEec----hhHHHHHHhhccCCCEEEEcCCCCcccchhHHHHHHcCCCCeecCCChhHHHHhc
Q psy6861 396 VRVKEY----EKVWNDLRNIGLYWNRIWLPSQIAYSAGVSKAITTLFSPDKRYAAPSPIIEMKAQ 456 (559)
Q Consensus 396 v~v~~y----~~~~~~L~~l~~~~~~I~id~~~~~~~~~~~~l~~~l~~~~~v~~~~~i~~lRai 456 (559)
.++..| +++.+.|++++...++||+|.+. ++......+.+.+++.++++.++++..+|+|
T Consensus 69 ~~v~~~~~~~~~~~~~l~~~~~~~~~igve~~~-~~~~~~~~l~~~~~~~~~v~~~~~i~~~R~I 132 (132)
T PF01321_consen 69 DEVVEYEDPYEAIAEALKKLGPEGKRIGVEPDS-LSAAEYQRLQEALPGAEFVDASPLIEELRMI 132 (132)
T ss_dssp SEEEEESTHHHHHHHHHHHHTTTTSEEEEETTT-SBHHHHHHHHHHSTTSEEEEEHHHHHHHHTS
T ss_pred ceEEEEecccchHHHHHHHhCCCCCEEEEcCCc-ChHHHHHHHHHhCCCCEEEEcHHHHHHcCcC
Confidence 444544 55667777776555899999987 3333334455556777888888899999986
No 49
>PRK07281 methionine aminopeptidase; Reviewed
Probab=99.37 E-value=1.2e-12 Score=131.98 Aligned_cols=92 Identities=17% Similarity=0.118 Sum_probs=76.8
Q ss_pred HhcCCHHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCcCHHHHHHHHHHHHHhcCCC-------C--CCCcccccccC
Q psy6861 454 KAQKNDVEIKGMHEAHIRDAVIFCDAMAFVEDQYFRGEDITETSVAHILDSHRTENTIS-------R--GISFESIVAYG 524 (559)
Q Consensus 454 RaiKn~~EI~~~R~A~i~d~~Al~~~~~~l~~~l~~G~~~tE~ei~~~l~~~r~~~~g~-------~--~~sf~tIva~G 524 (559)
-.+||++||+.||+|..+...++ ..+.+.+++| +||.|+++.+.++ ..+.|+ . ..+|++|+++|
T Consensus 2 ~~iKs~~EI~~mr~A~~i~~~~~----~~~~~~i~pG--~te~ei~~~~~~~-~~~~g~~~~~~G~~~~~~~f~~~v~~G 74 (286)
T PRK07281 2 ITLKSAREIEAMDRAGDFLASIH----IGLRDLIKPG--VDMWEVEEYVRRR-CKEENVLPLQIGVDGAMMDYPYATCCG 74 (286)
T ss_pred cccCCHHHHHHHHHHHHHHHHHH----HHHHHHCcCC--CcHHHHHHHHHHH-HHHcCCcccccCCCCcccCCCcceEEe
Confidence 36999999999999976655554 4445779999 9999999999886 344432 2 26899999999
Q ss_pred CCCccccccCCCCCCceecCCCcEEEecCcc
Q psy6861 525 EHAALPHYTPSNATNVVVRGDAPLLVDSGGH 555 (559)
Q Consensus 525 ~n~A~~Hy~~~~~t~~~i~~gd~vliDsG~~ 555 (559)
.|++++|+.|+ +++|++||+|++|+|+.
T Consensus 75 ~n~~~~H~~p~---~~~l~~Gd~v~iD~g~~ 102 (286)
T PRK07281 75 LNDEVAHAFPR---HYILKEGDLLKVDMVLS 102 (286)
T ss_pred ccccccCCCCC---CcCcCCCCEEEEEeccc
Confidence 99999999998 99999999999999974
No 50
>PRK12318 methionine aminopeptidase; Provisional
Probab=99.36 E-value=1.3e-12 Score=132.46 Aligned_cols=98 Identities=11% Similarity=0.113 Sum_probs=80.4
Q ss_pred hHHHHh-cCCHHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCcCHHHHHHHHHHHHHhcCCC-------CCCCccccc
Q psy6861 450 IIEMKA-QKNDVEIKGMHEAHIRDAVIFCDAMAFVEDQYFRGEDITETSVAHILDSHRTENTIS-------RGISFESIV 521 (559)
Q Consensus 450 i~~lRa-iKn~~EI~~~R~A~i~d~~Al~~~~~~l~~~l~~G~~~tE~ei~~~l~~~r~~~~g~-------~~~sf~tIv 521 (559)
+..+|. |||++||+.||+|..+.+.++.+++ +.+++| +||.|+++.+..+ ....|. .+++|++++
T Consensus 36 ~~~~~i~IKs~~EIe~~R~Aa~I~~~a~~a~~----~~irpG--~tE~Eiaa~~~~~-~~~~G~~~~~~~~~~~~f~~~v 108 (291)
T PRK12318 36 ASQYDIIIKTPEQIEKIRKACQVTARILDALC----EAAKEG--VTTNELDELSREL-HKEYNAIPAPLNYGSPPFPKTI 108 (291)
T ss_pred cCCCceEECCHHHHHHHHHHHHHHHHHHHHHH----HhccCC--CCHHHHHHHHHHH-HHHcCCCccccccCCCCCCcce
Confidence 333444 9999999999999766666765554 679999 9999999888765 344443 235799999
Q ss_pred ccCCCCccccccCCCCCCceecCCCcEEEecCcccc
Q psy6861 522 AYGEHAALPHYTPSNATNVVVRGDAPLLVDSGGHYM 557 (559)
Q Consensus 522 a~G~n~A~~Hy~~~~~t~~~i~~gd~vliDsG~~Y~ 557 (559)
++|.|++++|+.|+ +++|++||+|++|+|+.|.
T Consensus 109 ~~g~n~~~~H~~p~---~~~l~~GD~V~vD~g~~~~ 141 (291)
T PRK12318 109 CTSLNEVICHGIPN---DIPLKNGDIMNIDVSCIVD 141 (291)
T ss_pred EeeccceeecCCCC---CCccCCCCEEEEEEeEEEC
Confidence 99999999999998 9999999999999999886
No 51
>TIGR00500 met_pdase_I methionine aminopeptidase, type I. Methionine aminopeptidase is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. This model describes type I. The role of this protein in general is to produce the mature form of cytosolic proteins by removing the N-terminal methionine.
Probab=99.35 E-value=2.4e-12 Score=128.08 Aligned_cols=94 Identities=17% Similarity=0.192 Sum_probs=79.3
Q ss_pred hcCCHHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCcCHHHHHHHHHHHHHhcCCCCC-----CCcccccccCCCCcc
Q psy6861 455 AQKNDVEIKGMHEAHIRDAVIFCDAMAFVEDQYFRGEDITETSVAHILDSHRTENTISRG-----ISFESIVAYGEHAAL 529 (559)
Q Consensus 455 aiKn~~EI~~~R~A~i~d~~Al~~~~~~l~~~l~~G~~~tE~ei~~~l~~~r~~~~g~~~-----~sf~tIva~G~n~A~ 529 (559)
+|||++||+.||+|+.+...++.+++ +.+++| +||.|++..+..+ +.+.|... .+|++++++|+|+++
T Consensus 2 ~iKs~~Ei~~~r~A~~i~~~~~~~~~----~~i~~G--~tE~el~~~~~~~-~~~~G~~~~~~~~~~~~~~~~~~~n~~~ 74 (247)
T TIGR00500 2 SLKSPDEIEKIRKAGRLAAEVLEELE----REVKPG--VSTKELDRIAKDF-IEKHGAKPAFLGYYGFPGSVCISVNEVV 74 (247)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHH----HhccCC--CCHHHHHHHHHHH-HHHCCCCccccCCCCCCceeEeccccEE
Confidence 69999999999999766666655444 679999 9999999999876 45666432 357888899999999
Q ss_pred ccccCCCCCCceecCCCcEEEecCccccc
Q psy6861 530 PHYTPSNATNVVVRGDAPLLVDSGGHYMV 558 (559)
Q Consensus 530 ~Hy~~~~~t~~~i~~gd~vliDsG~~Y~~ 558 (559)
+||.|+ +++|++||+|++|+|++|..
T Consensus 75 ~H~~~~---~~~l~~Gd~v~iD~g~~~~g 100 (247)
T TIGR00500 75 IHGIPD---KKVLKDGDIVNIDVGVIYDG 100 (247)
T ss_pred EecCCC---CcccCCCCEEEEEEEEEECC
Confidence 999998 99999999999999999864
No 52
>PRK12896 methionine aminopeptidase; Reviewed
Probab=99.25 E-value=1.3e-11 Score=123.32 Aligned_cols=97 Identities=13% Similarity=0.079 Sum_probs=80.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCcCHHHHHHHHHHHHHhcCCCC-----CCCcccccccCCC
Q psy6861 452 EMKAQKNDVEIKGMHEAHIRDAVIFCDAMAFVEDQYFRGEDITETSVAHILDSHRTENTISR-----GISFESIVAYGEH 526 (559)
Q Consensus 452 ~lRaiKn~~EI~~~R~A~i~d~~Al~~~~~~l~~~l~~G~~~tE~ei~~~l~~~r~~~~g~~-----~~sf~tIva~G~n 526 (559)
++++|||+.||+.||+|+.+...++.+++ +.+++| +||.|++..+... +...|.. ...|++++++|.|
T Consensus 6 ~~~~vKs~~Ei~~~r~a~~i~~~~~~~~~----~~i~pG--~te~el~~~~~~~-~~~~G~~~~~~~~~~~~~~~~~~~n 78 (255)
T PRK12896 6 RGMEIKSPRELEKMRKIGRIVATALKEMG----KAVEPG--MTTKELDRIAEKR-LEEHGAIPSPEGYYGFPGSTCISVN 78 (255)
T ss_pred CceeECCHHHHHHHHHHHHHHHHHHHHHH----hhccCC--CCHHHHHHHHHHH-HHHCCCEeCcccCCCCCcceEecCC
Confidence 34689999999999999777666765555 679999 9999999999876 4556654 2357778888999
Q ss_pred CccccccCCCCCCceecCCCcEEEecCccccc
Q psy6861 527 AALPHYTPSNATNVVVRGDAPLLVDSGGHYMV 558 (559)
Q Consensus 527 ~A~~Hy~~~~~t~~~i~~gd~vliDsG~~Y~~ 558 (559)
.+.+|+.|+ +++|++||+|++|+|+.|..
T Consensus 79 ~~~~h~~p~---~~~l~~Gd~v~iD~g~~~~g 107 (255)
T PRK12896 79 EEVAHGIPG---PRVIKDGDLVNIDVSAYLDG 107 (255)
T ss_pred CeeEecCCC---CccCCCCCEEEEEEeEEECc
Confidence 999999998 89999999999999999864
No 53
>KOG1189|consensus
Probab=99.23 E-value=2.2e-11 Score=130.31 Aligned_cols=160 Identities=19% Similarity=0.213 Sum_probs=123.7
Q ss_pred EEEEEEcC-ccceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhcC----CCCCCceec
Q psy6861 9 LILARIDG-TTDVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLWKLGR----DYPHGTGHG 83 (559)
Q Consensus 9 ~~G~~~~G-~aD~tRT~~vG~~~~~~~~~~~~~~~a~~~~~~~~~~~G~~~~~i~~~~~~~~~~~g~----~~~~~~GHg 83 (559)
-+|++|++ |+.++|||.+ .|+.+|.+.|+..+.++.+++. +++||...++|+.++-+++.+.+. .+....|.|
T Consensus 235 s~G~RynsYCSNv~RT~Li-dpssemq~nY~fLl~aqe~il~-~lrpG~ki~dVY~~~l~~v~k~~Pel~~~~~k~lG~~ 312 (960)
T KOG1189|consen 235 SLGIRYNSYCSNVSRTYLI-DPSSEMQENYEFLLAAQEEILK-LLRPGTKIGDVYEKALDYVEKNKPELVPNFTKNLGFG 312 (960)
T ss_pred eccchhhhhhccccceeee-cchHHHHHHHHHHHHHHHHHHH-hhcCCCchhHHHHHHHHHHHhcCcchhhhhhhhcccc
Confidence 58999999 9999999999 7899999999999998776655 666799999999999999998654 456679999
Q ss_pred CCCCCCCCCCcccccCCCcccccccccccceEeCCCCcccc------CcccceeeeeeEEEEEecCCCCcccceeeccCC
Q psy6861 84 IGAFSSVHECTISFVQNNTDIYSSILTKVILLLSPEPGYYK------EDEFGIRLEDIFEVVYAAGTDEQYLAFKPVTAV 157 (559)
Q Consensus 84 iGl~~~~hE~P~~~~~~~~~~~~~~~l~~GMV~tiEP~i~~------~g~~giried~~~vt~~~~~~~~~~~~e~lt~~ 157 (559)
||+ .+.|.-+.++..++ ++|++||||.|--|+-. .+.+.+-|.|+++|++++ -.+.||.+
T Consensus 313 iGl--EFREssl~inaKnd-----~~lk~gmvFni~lGf~nl~n~~~~~~yaL~l~DTvlv~e~~-------p~~vLT~~ 378 (960)
T KOG1189|consen 313 IGL--EFRESSLVINAKND-----RVLKKGMVFNISLGFSNLTNPESKNSYALLLSDTVLVGEDP-------PAEVLTDS 378 (960)
T ss_pred cce--eeecccccccccch-----hhhccCcEEEEeeccccccCcccccchhhhccceeeecCCC-------cchhhccc
Confidence 999 99999887777765 47999999999877733 134677899999999973 14889987
Q ss_pred CCCcceeecccCCCCCCcccccccccc
Q psy6861 158 PFEPKFIDISLFGPEESEEVHPRDERL 184 (559)
Q Consensus 158 p~~~~~~~i~~~D~h~~e~~~~~~~~~ 184 (559)
+....-+-+.-.|+.+-+-..+.++..
T Consensus 379 ~K~~~dv~~~f~~eeeE~~~~~k~~~~ 405 (960)
T KOG1189|consen 379 AKAVKDVSYFFKDEEEEEELEKKDPAT 405 (960)
T ss_pred chhhcccceeeccchhhhhhhhccccc
Confidence 766544444334433333344443333
No 54
>PLN03158 methionine aminopeptidase; Provisional
Probab=99.22 E-value=2.8e-11 Score=126.99 Aligned_cols=100 Identities=13% Similarity=0.058 Sum_probs=83.4
Q ss_pred hhHHHHhcCCHHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCcCHHHHHHHHHHHHHhcCCCCC-----CCccccccc
Q psy6861 449 PIIEMKAQKNDVEIKGMHEAHIRDAVIFCDAMAFVEDQYFRGEDITETSVAHILDSHRTENTISRG-----ISFESIVAY 523 (559)
Q Consensus 449 ~i~~lRaiKn~~EI~~~R~A~i~d~~Al~~~~~~l~~~l~~G~~~tE~ei~~~l~~~r~~~~g~~~-----~sf~tIva~ 523 (559)
.+...|.|||++||+.||+|+.+...++..++ +.+++| +||.||++.+.++. ...|... ..|+.++++
T Consensus 130 ~~~~~~~IKsp~EIe~mR~A~~ia~~al~~a~----~~irpG--vTe~EI~~~v~~~~-~~~Ga~ps~l~y~~fp~svct 202 (396)
T PLN03158 130 DLQHSVEIKTPEQIQRMRETCRIAREVLDAAA----RAIKPG--VTTDEIDRVVHEAT-IAAGGYPSPLNYHFFPKSCCT 202 (396)
T ss_pred ccccceeeCCHHHHHHHHHHHHHHHHHHHHHH----HHccCC--CCHHHHHHHHHHHH-HHcCCccccccccCCCceeee
Confidence 45567999999999999999777666665554 679999 99999999998874 3444321 358888999
Q ss_pred CCCCccccccCCCCCCceecCCCcEEEecCccccc
Q psy6861 524 GEHAALPHYTPSNATNVVVRGDAPLLVDSGGHYMV 558 (559)
Q Consensus 524 G~n~A~~Hy~~~~~t~~~i~~gd~vliDsG~~Y~~ 558 (559)
|.|.+++|+.|+ +++|++||+|++|+|+.|+.
T Consensus 203 s~N~~i~Hgip~---~r~L~~GDiV~iDvg~~~~G 234 (396)
T PLN03158 203 SVNEVICHGIPD---ARKLEDGDIVNVDVTVYYKG 234 (396)
T ss_pred cccccccCCCCC---CccCCCCCEEEEEEeEEECC
Confidence 999999999998 99999999999999998864
No 55
>PRK05716 methionine aminopeptidase; Validated
Probab=99.18 E-value=7.8e-11 Score=117.52 Aligned_cols=95 Identities=16% Similarity=0.079 Sum_probs=78.3
Q ss_pred HhcCCHHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCcCHHHHHHHHHHHHHhcCCCC-----CCCcccccccCCCCc
Q psy6861 454 KAQKNDVEIKGMHEAHIRDAVIFCDAMAFVEDQYFRGEDITETSVAHILDSHRTENTISR-----GISFESIVAYGEHAA 528 (559)
Q Consensus 454 RaiKn~~EI~~~R~A~i~d~~Al~~~~~~l~~~l~~G~~~tE~ei~~~l~~~r~~~~g~~-----~~sf~tIva~G~n~A 528 (559)
=+|||++||+.||+|+.+...++.+++ +.+++| +||.|++..+... ....|.. ..+|++++.+|.|++
T Consensus 3 ~~iKs~~Ei~~~r~A~~i~~~~~~~a~----~~i~pG--~se~ela~~~~~~-~~~~G~~~~~~~~~~~~~~~~~g~~~~ 75 (252)
T PRK05716 3 ITIKTPEEIEKMRVAGRLAAEVLDEIE----PHVKPG--VTTKELDRIAEEY-IRDQGAIPAPLGYHGFPKSICTSVNEV 75 (252)
T ss_pred eeeCCHHHHHHHHHHHHHHHHHHHHHH----HHccCC--CCHHHHHHHHHHH-HHHCCCEecccCCCCCCcCeEecccce
Confidence 369999999999999766666655444 678999 9999999988776 3445542 346778889999999
Q ss_pred cccccCCCCCCceecCCCcEEEecCccccc
Q psy6861 529 LPHYTPSNATNVVVRGDAPLLVDSGGHYMV 558 (559)
Q Consensus 529 ~~Hy~~~~~t~~~i~~gd~vliDsG~~Y~~ 558 (559)
.+|+.|+ +++|++||++++|+|+.|..
T Consensus 76 ~~h~~~~---~~~l~~Gd~v~id~g~~~~g 102 (252)
T PRK05716 76 VCHGIPS---DKVLKEGDIVNIDVTVIKDG 102 (252)
T ss_pred eecCCCC---CcccCCCCEEEEEEEEEECC
Confidence 9999998 89999999999999999863
No 56
>cd01087 Prolidase Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Probab=99.08 E-value=2.9e-10 Score=112.75 Aligned_cols=86 Identities=24% Similarity=0.314 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhccCCCCcCHHHHHHHHHHHHHhcCCCCCCCcccccccCCCCccccccCCCCCCce
Q psy6861 462 IKGMHEAHIRDAVIFCDAMAFVEDQYFRGEDITETSVAHILDSHRTENTISRGISFESIVAYGEHAALPHYTPSNATNVV 541 (559)
Q Consensus 462 I~~~R~A~i~d~~Al~~~~~~l~~~l~~G~~~tE~ei~~~l~~~r~~~~g~~~~sf~tIva~G~n~A~~Hy~~~~~t~~~ 541 (559)
|+.||+|..+...++.+++ +.+++| +||.|+++.+... ..+.|.. ++|++++++|+|++.||+.|+ +++
T Consensus 1 i~~lr~A~~i~~~~~~~~~----~~i~pG--~tE~ei~~~~~~~-~~~~G~~-~~~~~~v~~g~~~~~~H~~~~---~~~ 69 (243)
T cd01087 1 IELMRKACDISAEAHRAAM----KASRPG--MSEYELEAEFEYE-FRSRGAR-LAYSYIVAAGSNAAILHYVHN---DQP 69 (243)
T ss_pred CHHHHHHHHHHHHHHHHHH----HHCcCC--CcHHHHHHHHHHH-HHHcCCC-cCCCCeEEECCCccccCCCcC---CCc
Confidence 6789999766666665554 669999 9999999999886 4566665 789999999999999999998 999
Q ss_pred ecCCCcEEEecCccccc
Q psy6861 542 VRGDAPLLVDSGGHYMV 558 (559)
Q Consensus 542 i~~gd~vliDsG~~Y~~ 558 (559)
|++||+|++|+|++|+.
T Consensus 70 l~~Gd~v~vD~g~~~~G 86 (243)
T cd01087 70 LKDGDLVLIDAGAEYGG 86 (243)
T ss_pred CCCCCEEEEEeCceECC
Confidence 99999999999999863
No 57
>cd01092 APP-like Similar to Prolidase and Aminopeptidase P. The members of this subfamily presumably catalyse hydrolysis of Xaa-Pro dipeptides and/or release of any N-terminal amino acid, including proline, that is linked with proline.
Probab=99.01 E-value=1e-09 Score=105.92 Aligned_cols=87 Identities=30% Similarity=0.371 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhccCCCCcCHHHHHHHHHHHHHhcCCCCCCCcccccccCCCCccccccCCCCCCce
Q psy6861 462 IKGMHEAHIRDAVIFCDAMAFVEDQYFRGEDITETSVAHILDSHRTENTISRGISFESIVAYGEHAALPHYTPSNATNVV 541 (559)
Q Consensus 462 I~~~R~A~i~d~~Al~~~~~~l~~~l~~G~~~tE~ei~~~l~~~r~~~~g~~~~sf~tIva~G~n~A~~Hy~~~~~t~~~ 541 (559)
|++||+|+.+...++..+. +.+++| +||.|++..+... ..+.|..+.+|++++++|+|+..+|+.|+ +++
T Consensus 1 i~~~r~a~~i~~~~~~~~~----~~~~~G--~te~ei~~~~~~~-~~~~g~~~~~~~~~v~~g~~~~~~h~~~~---~~~ 70 (208)
T cd01092 1 IELLRKAARIADKAFEELL----EFIKPG--MTEREVAAELEYF-MRKLGAEGPSFDTIVASGPNSALPHGVPS---DRK 70 (208)
T ss_pred CHHHHHHHHHHHHHHHHHH----HHCcCC--CCHHHHHHHHHHH-HHHcCCCCCCCCcEEEECccccccCCCCC---CcC
Confidence 6789999766666665544 678999 8999999999887 46778878899999999999999999998 899
Q ss_pred ecCCCcEEEecCccccc
Q psy6861 542 VRGDAPLLVDSGGHYMV 558 (559)
Q Consensus 542 i~~gd~vliDsG~~Y~~ 558 (559)
|++||++++|+|++|+.
T Consensus 71 l~~gd~v~id~g~~~~g 87 (208)
T cd01092 71 IEEGDLVLIDFGAIYDG 87 (208)
T ss_pred cCCCCEEEEEeeeeECC
Confidence 99999999999999863
No 58
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=98.96 E-value=2.5e-09 Score=112.48 Aligned_cols=97 Identities=14% Similarity=0.224 Sum_probs=76.7
Q ss_pred HhcCCHHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCcCHHHHHHHHHHHHHh---------cCCCCCCCcccccccC
Q psy6861 454 KAQKNDVEIKGMHEAHIRDAVIFCDAMAFVEDQYFRGEDITETSVAHILDSHRTE---------NTISRGISFESIVAYG 524 (559)
Q Consensus 454 RaiKn~~EI~~~R~A~i~d~~Al~~~~~~l~~~l~~G~~~tE~ei~~~l~~~r~~---------~~g~~~~sf~tIva~G 524 (559)
-.+||++||+.||+|+.+...++.. +.+.+++| +||.|++...+.+... +.++.+.+|+++++
T Consensus 11 ~~i~~~~eI~~~r~Aa~Ia~~~l~~----~~~~ikpG--~t~~el~~~~~~~i~~~~a~~~~~~~~~~~g~afpt~vS-- 82 (389)
T TIGR00495 11 YSLSNPEVVTKYKMAGEIANNVLKS----VVEACSPG--AKVVDICEKGDAFIMEETAKIFKKEKEMEKGIAFPTCIS-- 82 (389)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHH----HHHhCCCC--CCHHHHHHHHHHHHHHhhhhhhcccccccCCCCCCeEEe--
Confidence 4689999999999997666656544 44679999 9999999876655322 13467889998887
Q ss_pred CCCccccccCCCC-CCceecCCCcEEEecCccccc
Q psy6861 525 EHAALPHYTPSNA-TNVVVRGDAPLLVDSGGHYMV 558 (559)
Q Consensus 525 ~n~A~~Hy~~~~~-t~~~i~~gd~vliDsG~~Y~~ 558 (559)
.|...+||.|... +++.|++||+|.||+|++|+.
T Consensus 83 vN~~v~H~~P~~~d~~~~Lk~GDvVkIDlG~~idG 117 (389)
T TIGR00495 83 VNNCVGHFSPLKSDQDYILKEGDVVKIDLGCHIDG 117 (389)
T ss_pred cCCeeeCCCCCCCCCCcCcCCCCEEEEEEEEEECC
Confidence 6888999999543 358899999999999999864
No 59
>PF00557 Peptidase_M24: Metallopeptidase family M24 This Prosite entry corresponds to sub-family M24B This Prosite entry corresponds to sub-families M24A and M24C; InterPro: IPR000994 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains proteins that belong to MEROPS peptidase family M24 (clan MG), which share a common structural-fold, the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. The entry also contains proteins that have lost catalytic activity, for example Spt16, which is a component of the FACT complex. The crystal structure of the N-terminal domain of Spt16, determined to 2.1A, reveals an aminopeptidase P fold whose enzymatic activity has been lost. This fold binds directly to histones H3-H4 through a interaction with their globular core domains, as well as with their N-terminal tails []. The FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p (P32558 from SWISSPROT, IPR013953 from INTERPRO) and Pob3p (Q04636 from SWISSPROT, IPR000969 from INTERPRO). The complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin []; it also facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, , ]. ; GO: 0009987 cellular process; PDB: 4A6V_B 4A6W_A 3CTZ_A 3IG4_B 2B3H_A 2NQ6_A 2NQ7_A 2GZ5_A 2G6P_A 2B3L_A ....
Probab=98.95 E-value=1.7e-09 Score=104.48 Aligned_cols=87 Identities=24% Similarity=0.345 Sum_probs=75.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhccCCCCcCHHHHHHHHHHHHHhcCCCCCCCcccccccCCCCccccccCCCCCCcee
Q psy6861 463 KGMHEAHIRDAVIFCDAMAFVEDQYFRGEDITETSVAHILDSHRTENTISRGISFESIVAYGEHAALPHYTPSNATNVVV 542 (559)
Q Consensus 463 ~~~R~A~i~d~~Al~~~~~~l~~~l~~G~~~tE~ei~~~l~~~r~~~~g~~~~sf~tIva~G~n~A~~Hy~~~~~t~~~i 542 (559)
|+||+|+.+...++.+++ +.+++| +||.|+++.+........|..+.+|++++++|+|+..+|+.|+ +++|
T Consensus 1 e~~R~a~~i~~~~~~~~~----~~~~~G--~te~ei~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~---~~~l 71 (207)
T PF00557_consen 1 ECMRKAARIADAAMEAAM----EALRPG--MTEYEIAAAIERAMLRRHGGEEPAFPPIVGSGPNTDLPHYTPT---DRRL 71 (207)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHSTT--CBHHHHHHHHHHHHHHHTTTTEESSESEEEECCCCGETTTBCC---SSBE
T ss_pred CHHHHHHHHHHHHHHHHH----HHccCC--CcHHHHHHHHHHHHHHHcCCCcccCCceEecCCcceecceecc---ceee
Confidence 689999877777777766 558899 9999999999987445677778899999999999999999887 9999
Q ss_pred cCCCcEEEecCccccc
Q psy6861 543 RGDAPLLVDSGGHYMV 558 (559)
Q Consensus 543 ~~gd~vliDsG~~Y~~ 558 (559)
++||+|.+|+|++|..
T Consensus 72 ~~gd~v~id~~~~~~g 87 (207)
T PF00557_consen 72 QEGDIVIIDFGPRYDG 87 (207)
T ss_dssp STTEEEEEEEEEEETT
T ss_pred ecCCcceeeccceeee
Confidence 9999999999999863
No 60
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=98.93 E-value=2.5e-09 Score=104.99 Aligned_cols=86 Identities=13% Similarity=0.002 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhccCCCCcCHHHHHHHHHHHHHhcCCCCCCCc------ccccccCCCCccccccCC
Q psy6861 462 IKGMHEAHIRDAVIFCDAMAFVEDQYFRGEDITETSVAHILDSHRTENTISRGISF------ESIVAYGEHAALPHYTPS 535 (559)
Q Consensus 462 I~~~R~A~i~d~~Al~~~~~~l~~~l~~G~~~tE~ei~~~l~~~r~~~~g~~~~sf------~tIva~G~n~A~~Hy~~~ 535 (559)
|+.||+|..+...++.+++ +.+++| +||.|+++.+.+. +...|..+.++ .+|+++|+|++.+|+.|+
T Consensus 1 I~~ir~Aa~i~d~~~~~~~----~~i~pG--~tE~ei~a~~~~~-~~~~ga~~~~~~~~~~~~~~v~~G~~~~~~H~~~~ 73 (228)
T cd01090 1 IALIRHGARIADIGGAAVV----EAIREG--VPEYEVALAGTQA-MVREIAKTFPEVELMDTWTWFQSGINTDGAHNPVT 73 (228)
T ss_pred CHHHHHHHHHHHHHHHHHH----HHhcCC--CCHHHHHHHHHHH-HHHcCCccCCcccccCcceEEEeeccccccCCCCC
Confidence 6789999766666765555 679999 9999999998776 45555443333 268899999999999988
Q ss_pred CCCCceecCCCcEEEecCcccc
Q psy6861 536 NATNVVVRGDAPLLVDSGGHYM 557 (559)
Q Consensus 536 ~~t~~~i~~gd~vliDsG~~Y~ 557 (559)
+++|++||+|++|+|+.|+
T Consensus 74 ---~r~l~~GD~v~~d~g~~~~ 92 (228)
T cd01090 74 ---NRKVQRGDILSLNCFPMIA 92 (228)
T ss_pred ---CcccCCCCEEEEEEeEEEC
Confidence 9999999999999999875
No 61
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=98.89 E-value=6.8e-09 Score=110.19 Aligned_cols=98 Identities=15% Similarity=0.184 Sum_probs=76.8
Q ss_pred HHhcCCHHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCcCHHHHHHHHHHHHH---hcCCC-CCCCcccccccCCCCc
Q psy6861 453 MKAQKNDVEIKGMHEAHIRDAVIFCDAMAFVEDQYFRGEDITETSVAHILDSHRT---ENTIS-RGISFESIVAYGEHAA 528 (559)
Q Consensus 453 lRaiKn~~EI~~~R~A~i~d~~Al~~~~~~l~~~l~~G~~~tE~ei~~~l~~~r~---~~~g~-~~~sf~tIva~G~n~A 528 (559)
-+..||++||+.||+|+.+...+ +.++.+.+++| +||.||+..++.... ...|. .+.+|++++ +.|.+
T Consensus 149 ~~~~~s~~EI~~~R~AaeIa~~v----l~~~~~~IkpG--~se~EIa~~ie~~ir~~~~~~G~~~g~aFPt~v--S~N~~ 220 (470)
T PTZ00053 149 ELEKLSEEQYQDLRRAAEVHRQV----RRYAQSVIKPG--VKLIDICERIESKSRELIEADGLKCGWAFPTGC--SLNHC 220 (470)
T ss_pred ccccCCHHHHHHHHHHHHHHHHH----HHHHHHHhhCC--CCHHHHHHHHHHHHHHHHHhcCCcccCCCCcee--ecCcc
Confidence 34448999999999997555544 55566779999 999999998877421 22344 478999865 57888
Q ss_pred cccccCCCCCCceecCCCcEEEecCccccc
Q psy6861 529 LPHYTPSNATNVVVRGDAPLLVDSGGHYMV 558 (559)
Q Consensus 529 ~~Hy~~~~~t~~~i~~gd~vliDsG~~Y~~ 558 (559)
.+||.|+...+++|++||+|.||+|++|+.
T Consensus 221 aaH~tP~~gd~~vLk~GDvVkID~G~~vdG 250 (470)
T PTZ00053 221 AAHYTPNTGDKTVLTYDDVCKLDFGTHVNG 250 (470)
T ss_pred ccCCCCCCCCCcEecCCCeEEEEEeEEECC
Confidence 999999755578999999999999999874
No 62
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=98.81 E-value=1.5e-08 Score=103.18 Aligned_cols=89 Identities=17% Similarity=0.226 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCcCHHHHHHHHHHHHHhcCCCCCCCcccccccCCCCccccccCCCCCC
Q psy6861 460 VEIKGMHEAHIRDAVIFCDAMAFVEDQYFRGEDITETSVAHILDSHRTENTISRGISFESIVAYGEHAALPHYTPSNATN 539 (559)
Q Consensus 460 ~EI~~~R~A~i~d~~Al~~~~~~l~~~l~~G~~~tE~ei~~~l~~~r~~~~g~~~~sf~tIva~G~n~A~~Hy~~~~~t~ 539 (559)
+||+.||+|..+...++.+++ +.+++| +||.|+++.++.. ....|.. ++|+++++. |...+||.|.+..+
T Consensus 3 ~~i~~~r~A~~I~~~~~~~~~----~~i~~G--~se~el~~~~e~~-~~~~g~~-~aFp~~vs~--n~~~~H~~p~~~d~ 72 (295)
T TIGR00501 3 ERAEKWIEAGKIHSKVRREAA----DRIVPG--VKLLEVAEFVENR-IRELGAE-PAFPCNISI--NECAAHFTPKAGDK 72 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHCcCC--CCHHHHHHHHHHH-HHHcCCC-CCCCcceec--CCEeeCCCCCCCcC
Confidence 789999999766666665554 669999 9999999999887 4566665 799998775 66678999976667
Q ss_pred ceecCCCcEEEecCccccc
Q psy6861 540 VVVRGDAPLLVDSGGHYMV 558 (559)
Q Consensus 540 ~~i~~gd~vliDsG~~Y~~ 558 (559)
++|++||+|++|.|++|++
T Consensus 73 ~~l~~GDvV~iD~G~~~dG 91 (295)
T TIGR00501 73 TVFKDGDVVKLDLGAHVDG 91 (295)
T ss_pred ccCCCCCEEEEEEeEEECC
Confidence 8899999999999999874
No 63
>cd01066 APP_MetAP A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as metallopeptidase family M24. This family of enzymes is able to cleave amido-, imido- and amidino-containing bonds. Members exibit relatively narrow substrate specificity compared to other metallo-aminopeptidases, suggesting they play roles in regulation of biological processes rather than general protein degradation.
Probab=98.81 E-value=1.3e-08 Score=97.45 Aligned_cols=85 Identities=27% Similarity=0.357 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhccCCCCcCHHHHHHHHHHHHHhcCCCCCCCcccccccCCCCccccccCCCCCCce
Q psy6861 462 IKGMHEAHIRDAVIFCDAMAFVEDQYFRGEDITETSVAHILDSHRTENTISRGISFESIVAYGEHAALPHYTPSNATNVV 541 (559)
Q Consensus 462 I~~~R~A~i~d~~Al~~~~~~l~~~l~~G~~~tE~ei~~~l~~~r~~~~g~~~~sf~tIva~G~n~A~~Hy~~~~~t~~~ 541 (559)
|+.||+|..+...++.+++ +.+++| +||.|++..+... ....|. +.+|.+++++|+|+..+||.|+ +++
T Consensus 1 i~~~r~a~~i~~~~~~~~~----~~~~~G--~te~ei~~~~~~~-~~~~g~-~~~~~~~v~~g~~~~~~h~~~~---~~~ 69 (207)
T cd01066 1 IARLRKAAEIAEAAMAAAA----EAIRPG--VTEAEVAAAIEQA-LRAAGG-YPAGPTIVGSGARTALPHYRPD---DRR 69 (207)
T ss_pred CHHHHHHHHHHHHHHHHHH----HHCcCC--CCHHHHHHHHHHH-HHHcCC-CCCCCcEEEECccccCcCCCCC---CCC
Confidence 5789999766666665554 679999 9999999999987 456666 6788999999999999999998 899
Q ss_pred ecCCCcEEEecCcccc
Q psy6861 542 VRGDAPLLVDSGGHYM 557 (559)
Q Consensus 542 i~~gd~vliDsG~~Y~ 557 (559)
|++||++++|+|++|.
T Consensus 70 i~~gd~v~~d~g~~~~ 85 (207)
T cd01066 70 LQEGDLVLVDLGGVYD 85 (207)
T ss_pred cCCCCEEEEEeceeEC
Confidence 9999999999999985
No 64
>PF01321 Creatinase_N: Creatinase/Prolidase N-terminal domain; InterPro: IPR000587 Creatinase or creatine amidinohydrolase (3.5.3.3 from EC) catalyses the conversion of creatine and water to sarcosine and urea. The enzyme works as a homodimer, and is induced by choline chloride. Each monomer of creatinase has two clearly defined domains, a small N-terminal domain, and a large C-terminal domain. The structure of the C-terminal region represents the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. ; GO: 0016787 hydrolase activity; PDB: 1PV9_A 3CTZ_A 3IL0_B 3PN9_A 2HOW_A 1WN1_B 3I7M_A 1CHM_B 3QOC_D 1KP0_B ....
Probab=98.77 E-value=9e-09 Score=91.56 Aligned_cols=102 Identities=27% Similarity=0.418 Sum_probs=82.0
Q ss_pred ccccccCCC---CCCcceEE-EecCceEEEec-chhHHHHhhh-cCCCEEEEEcCCCCCCCHHHHHHhhcCCCcEEeeCC
Q psy6861 182 ERLKFLSGF---SGSYGFAV-VTATKAALWVT-GLDELQADLE-LSCDWLLMKSGHPGVPTITEWLKDELGTGMRVGVDP 255 (559)
Q Consensus 182 ~~~~~lsgF---tGs~g~~v-vt~~~a~l~tD-~RY~~qa~~q-l~~~~~l~~~~~~~~~~~~~wl~~~l~~~~~vg~d~ 255 (559)
..+.|+||| +|+.++++ |+.+++.||+| ++|..+++.+ ....+..++. ..+++.+||++.+.++++||+|+
T Consensus 23 ~ni~YltG~~~~~~~~~~~l~i~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~l~~~~~~~~~igve~ 99 (132)
T PF01321_consen 23 ENIRYLTGFRWQPGERPVLLVITADGAVLFVPKGEYERAAEESAPDDEVVEYED---PYEAIAEALKKLGPEGKRIGVEP 99 (132)
T ss_dssp HHHHHHHS--ST-TSSEEEEEEESSSEEEEEEGGGHHHHHHHHTTSSEEEEEST---HHHHHHHHHHHHTTTTSEEEEET
T ss_pred hhceEecCCCcCCCcceEEEEecccCcEEEeccccHHHHHHhhcCCceEEEEec---ccchHHHHHHHhCCCCCEEEEcC
Confidence 558999999 99999999 89999999999 9999999999 3445655543 13679999999999889999999
Q ss_pred CCCCHHHHHHHHHHHhhCCCEEEecCCCchHHhh
Q psy6861 256 KLIPNSQFEYLQRELNNATILLVQVVNNLIDQIW 289 (559)
Q Consensus 256 ~~~s~~~~~~~~~~l~~~~~~~~~~~~~lvd~iw 289 (559)
..+|...++.|++.+. +.++++. .++|+++.
T Consensus 100 ~~~~~~~~~~l~~~~~--~~~~v~~-~~~i~~~R 130 (132)
T PF01321_consen 100 DSLSAAEYQRLQEALP--GAEFVDA-SPLIEELR 130 (132)
T ss_dssp TTSBHHHHHHHHHHST--TSEEEEE-HHHHHHHH
T ss_pred CcChHHHHHHHHHhCC--CCEEEEc-HHHHHHcC
Confidence 9999999999999885 3477764 35666543
No 65
>PRK08671 methionine aminopeptidase; Provisional
Probab=98.77 E-value=2e-08 Score=102.18 Aligned_cols=88 Identities=22% Similarity=0.206 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCcCHHHHHHHHHHHHHhcCCCCCCCcccccccCCCCccccccCCCCCCc
Q psy6861 461 EIKGMHEAHIRDAVIFCDAMAFVEDQYFRGEDITETSVAHILDSHRTENTISRGISFESIVAYGEHAALPHYTPSNATNV 540 (559)
Q Consensus 461 EI~~~R~A~i~d~~Al~~~~~~l~~~l~~G~~~tE~ei~~~l~~~r~~~~g~~~~sf~tIva~G~n~A~~Hy~~~~~t~~ 540 (559)
+|+.||+|..+...++.+++ +.+++| +||.|+++.++.. ..+.|. +++|+++++.|+++ +||.|.+..++
T Consensus 1 ~i~~~r~A~~I~~~~~~~~~----~~i~pG--~se~ei~~~~~~~-i~~~g~-~~afp~~vs~n~~~--~H~~p~~~d~~ 70 (291)
T PRK08671 1 ELEKYLEAGKIASKVREEAA----KLIKPG--AKLLDVAEFVENR-IRELGA-KPAFPCNISINEVA--AHYTPSPGDER 70 (291)
T ss_pred CHHHHHHHHHHHHHHHHHHH----HhccCC--CcHHHHHHHHHHH-HHHcCC-ccCCCCEEeeCCCc--cCCCCCCCCCc
Confidence 58999999766666655544 679999 8999999999887 455665 58999998877664 79999766678
Q ss_pred eecCCCcEEEecCccccc
Q psy6861 541 VVRGDAPLLVDSGGHYMV 558 (559)
Q Consensus 541 ~i~~gd~vliDsG~~Y~~ 558 (559)
.|++||+|++|+|++|+.
T Consensus 71 ~l~~GDvV~iD~G~~~dG 88 (291)
T PRK08671 71 VFPEGDVVKLDLGAHVDG 88 (291)
T ss_pred ccCCCCEEEEEEeEEECC
Confidence 999999999999999874
No 66
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4. Family members have been implicated in cell cycle control.
Probab=98.76 E-value=2.5e-08 Score=97.92 Aligned_cols=89 Identities=13% Similarity=0.235 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhccCCCCcCHHHHHHHHHHHHHh---------cCCCCCCCcccccccCCCCccccc
Q psy6861 462 IKGMHEAHIRDAVIFCDAMAFVEDQYFRGEDITETSVAHILDSHRTE---------NTISRGISFESIVAYGEHAALPHY 532 (559)
Q Consensus 462 I~~~R~A~i~d~~Al~~~~~~l~~~l~~G~~~tE~ei~~~l~~~r~~---------~~g~~~~sf~tIva~G~n~A~~Hy 532 (559)
++.||+|+.+...++.+.+ +.+++| +||.|++...+.+... ..|+.+.+|+++++. |++.+||
T Consensus 1 ~~~~r~A~~I~~~~~~~~~----~~i~pG--~te~ei~~~~e~~i~~~~~~~~~~~~~g~~g~~~~~~v~~--n~~~~H~ 72 (228)
T cd01089 1 VTKYKTAGQIANKVLKQVI----SLCVPG--AKVVDLCEKGDKLILEELGKVYKKEKKLEKGIAFPTCISV--NNCVCHF 72 (228)
T ss_pred CHHHHHHHHHHHHHHHHHH----HhccCC--CcHHHHHHHHHHHHHHhhcccccCcccccCCCCcCeEecc--CceeecC
Confidence 3689999766666665554 669999 8999997655444222 256778899988874 8999999
Q ss_pred cCCC-CCCceecCCCcEEEecCccccc
Q psy6861 533 TPSN-ATNVVVRGDAPLLVDSGGHYMV 558 (559)
Q Consensus 533 ~~~~-~t~~~i~~gd~vliDsG~~Y~~ 558 (559)
.|.+ .++++|++||+|++|+|+.|+.
T Consensus 73 ~p~~~~~~~~l~~Gd~v~iD~g~~~~G 99 (228)
T cd01089 73 SPLKSDATYTLKDGDVVKIDLGCHIDG 99 (228)
T ss_pred CCCCCCCCcccCCCCEEEEEEEEEECC
Confidence 9854 3589999999999999999864
No 67
>cd01091 CDC68-like Related to aminopeptidase P and aminopeptidase M, a member of this domain family is present in cell division control protein 68, a transcription factor.
Probab=98.74 E-value=2.8e-08 Score=98.34 Aligned_cols=93 Identities=12% Similarity=0.181 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhHHHHHHH-HHHHHHhccCCCCcCHHHHHHHHHHHHHhcCCCC---------CCCcccccccCCCC-ccc
Q psy6861 462 IKGMHEAHIRDAVIFCDA-MAFVEDQYFRGEDITETSVAHILDSHRTENTISR---------GISFESIVAYGEHA-ALP 530 (559)
Q Consensus 462 I~~~R~A~i~d~~Al~~~-~~~l~~~l~~G~~~tE~ei~~~l~~~r~~~~g~~---------~~sf~tIva~G~n~-A~~ 530 (559)
+++||+|+.+...+|.++ ...+++.+.+|+.+||.+++++++.+ +...+.. ..+|++|+++|+|+ +++
T Consensus 1 ~~~~~~a~~~~~~~~~~~~~~~~~~~id~~~~~t~~~l~~~~e~~-~~~~~~~~~~~~~~~~~~~y~~iv~sG~~~~~l~ 79 (243)
T cd01091 1 LNNIKKASDATVDVLKKFFVDEVEEIIDQEKKVTHSKLSDKVEKA-IEDKKKYKAKLDPEQLDWCYPPIIQSGGNYDLLK 79 (243)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH-HhCchhhhcCCCHHHcCcccCCeEeECcCcccCC
Confidence 468999987777788655 44677788999779999999999997 5666655 67999999999999 899
Q ss_pred cccCCCCCCceecCCCcEEEecCccccc
Q psy6861 531 HYTPSNATNVVVRGDAPLLVDSGGHYMV 558 (559)
Q Consensus 531 Hy~~~~~t~~~i~~gd~vliDsG~~Y~~ 558 (559)
|+.++ ++.+..|+++++|+|+.|+.
T Consensus 80 h~~~s---~~~~~~~~~vl~d~G~~y~g 104 (243)
T cd01091 80 SSSSS---DKLLYHFGVIICSLGARYKS 104 (243)
T ss_pred CCCCC---ccccCCCCEEEEEeCcccCC
Confidence 99988 99999999999999999864
No 68
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=98.73 E-value=7e-08 Score=101.85 Aligned_cols=166 Identities=16% Similarity=0.120 Sum_probs=118.4
Q ss_pred CCceEEEEEEEEcC-ccceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhc----CCCC
Q psy6861 3 NTGLFRLILARIDG-TTDVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLWKLG----RDYP 77 (559)
Q Consensus 3 ~~~~~~~~G~~~~G-~aD~tRT~~vG~~~~~~~~~~~~~~~a~~~~~~~~~~~G~~~~~i~~~~~~~~~~~g----~~~~ 77 (559)
||.|..-+|.+|+| |+.++||+.+ +|+.+|.+-|+-++.++... ..+++||....+|+..+.+++.+.| ..|.
T Consensus 270 gd~vl~s~GiRYn~YCSn~~RT~l~-dp~~e~~~Ny~fl~~lQk~i-~~~~rpG~~~g~iY~~~~~yi~~~~pel~pnF~ 347 (1001)
T COG5406 270 GDVVLLSIGIRYNGYCSNMSRTILT-DPDSEQQKNYEFLYMLQKYI-LGLVRPGTDSGIIYSEAEKYISSNGPELGPNFI 347 (1001)
T ss_pred CceEEEEeeeeeccccccccceEEe-CCchHhhhhHHHHHHHHHHH-HhhcCCCCCchhHHHHHHHHHHhcCCccCchHh
Confidence 56666689999999 9999999998 68999999999988776654 5577889999999999999999855 4566
Q ss_pred CCceecCCCCCCCCCCcccccCCCcccccccccccceEeCCCCcccc------CcccceeeeeeEEEEEecCCCCcccce
Q psy6861 78 HGTGHGIGAFSSVHECTISFVQNNTDIYSSILTKVILLLSPEPGYYK------EDEFGIRLEDIFEVVYAAGTDEQYLAF 151 (559)
Q Consensus 78 ~~~GHgiGl~~~~hE~P~~~~~~~~~~~~~~~l~~GMV~tiEP~i~~------~g~~giried~~~vt~~~~~~~~~~~~ 151 (559)
...|-+||+ ...+.-..++..+ +++|+.||+|.|--|+.. ...+..-+-|++-|+-.. .
T Consensus 348 ~nvG~~igi--efR~s~~~~nvkn-----~r~lq~g~~fnis~gf~nl~~~~~~Nnyal~l~dt~qi~ls~--------p 412 (1001)
T COG5406 348 YNVGLMIGI--EFRSSQKPFNVKN-----GRVLQAGCIFNISLGFGNLINPHPKNNYALLLIDTEQISLSN--------P 412 (1001)
T ss_pred hhhhhhccc--cccccccceeccC-----CceeccccEEEEeecccccCCCCcccchhhhhccceEeecCC--------c
Confidence 778999999 8887654444443 368999999999876633 123667777888776652 3
Q ss_pred eeccCCCCCcce-eecccCCCCCCccccccccccc
Q psy6861 152 KPVTAVPFEPKF-IDISLFGPEESEEVHPRDERLK 185 (559)
Q Consensus 152 e~lt~~p~~~~~-~~i~~~D~h~~e~~~~~~~~~~ 185 (559)
-++|..|..-.- -.....|....||....++-=.
T Consensus 413 ~~~t~~~kaq~~isf~fgedd~~~e~~~~~~k~P~ 447 (1001)
T COG5406 413 IVFTDSPKAQGDISFLFGEDDETPEYLTLQDKAPD 447 (1001)
T ss_pred eecccCcccccceeEEecCCCCChhhcccccCCCC
Confidence 455555543211 1122245555555555444433
No 69
>cd01086 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=98.67 E-value=6.4e-08 Score=95.67 Aligned_cols=86 Identities=19% Similarity=0.208 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhccCCCCcCHHHHHHHHHHHHHhcCCCCC-----CCcccccccCCCCccccccCCC
Q psy6861 462 IKGMHEAHIRDAVIFCDAMAFVEDQYFRGEDITETSVAHILDSHRTENTISRG-----ISFESIVAYGEHAALPHYTPSN 536 (559)
Q Consensus 462 I~~~R~A~i~d~~Al~~~~~~l~~~l~~G~~~tE~ei~~~l~~~r~~~~g~~~-----~sf~tIva~G~n~A~~Hy~~~~ 536 (559)
|+.||+|..+...++..++ +.+++| +||.|++..+.+. ....|... .+|++++.+|.|++.+|+.|+
T Consensus 1 I~~lr~A~~i~~~~~~~~~----~~~~pG--~tE~ev~~~~~~~-~~~~G~~~~~~~~~~~~~~~~~~~~~~~~h~~~~- 72 (238)
T cd01086 1 IEGMREAGRIVAEVLDELA----KAIKPG--VTTKELDQIAHEF-IEEHGAYPAPLGYYGFPKSICTSVNEVVCHGIPD- 72 (238)
T ss_pred CHHHHHHHHHHHHHHHHHH----HHccCC--CCHHHHHHHHHHH-HHHcCCCcccccCCCCCcceecCCCCceeCCCCC-
Confidence 6889999766555665544 679999 9999999999886 45556532 356777889999999999998
Q ss_pred CCCceecCCCcEEEecCcccc
Q psy6861 537 ATNVVVRGDAPLLVDSGGHYM 557 (559)
Q Consensus 537 ~t~~~i~~gd~vliDsG~~Y~ 557 (559)
+++|++||++++|+|+.|.
T Consensus 73 --~~~l~~Gd~v~id~g~~~~ 91 (238)
T cd01086 73 --DRVLKDGDIVNIDVGVELD 91 (238)
T ss_pred --CcccCCCCEEEEEEEEEEC
Confidence 9999999999999999885
No 70
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=98.56 E-value=2e-07 Score=94.95 Aligned_cols=87 Identities=18% Similarity=0.220 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhccCCCCcCHHHHHHHHHHHHHhcCCCCCCCcccccccCCCCccccccCCCCCCce
Q psy6861 462 IKGMHEAHIRDAVIFCDAMAFVEDQYFRGEDITETSVAHILDSHRTENTISRGISFESIVAYGEHAALPHYTPSNATNVV 541 (559)
Q Consensus 462 I~~~R~A~i~d~~Al~~~~~~l~~~l~~G~~~tE~ei~~~l~~~r~~~~g~~~~sf~tIva~G~n~A~~Hy~~~~~t~~~ 541 (559)
++.||+|..+...|+.+++ +.+++| +||.|+++.+++. ....|. +++|++++ +.|...+||.|....+++
T Consensus 1 ~~~~r~Aa~I~~~a~~~~~----~~i~pG--~te~ei~~~~~~~-i~~~G~-~~afp~~i--s~n~~~~H~~p~~~d~~~ 70 (291)
T cd01088 1 LEKYREAGEIHRQVRKYAQ----SLIKPG--MTLLEIAEFVENR-IRELGA-GPAFPVNL--SINECAAHYTPNAGDDTV 70 (291)
T ss_pred CHHHHHHHHHHHHHHHHHH----HHccCC--CcHHHHHHHHHHH-HHHcCC-CCCCCcee--ccCCEeeCCCCCCCCCcc
Confidence 3679999766666665554 679999 9999999999886 455665 68898764 467778999998656789
Q ss_pred ecCCCcEEEecCccccc
Q psy6861 542 VRGDAPLLVDSGGHYMV 558 (559)
Q Consensus 542 i~~gd~vliDsG~~Y~~ 558 (559)
|++||+|.+|.|++|+.
T Consensus 71 l~~GDvV~iD~G~~~dG 87 (291)
T cd01088 71 LKEGDVVKLDFGAHVDG 87 (291)
T ss_pred cCCCCEEEEEEEEEECC
Confidence 99999999999999864
No 71
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=6e-07 Score=88.14 Aligned_cols=93 Identities=22% Similarity=0.222 Sum_probs=73.3
Q ss_pred cCCHHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCcCHHHHHHHHHHHHHh------cCCCCCCCcccccccCCCCcc
Q psy6861 456 QKNDVEIKGMHEAHIRDAVIFCDAMAFVEDQYFRGEDITETSVAHILDSHRTE------NTISRGISFESIVAYGEHAAL 529 (559)
Q Consensus 456 iKn~~EI~~~R~A~i~d~~Al~~~~~~l~~~l~~G~~~tE~ei~~~l~~~r~~------~~g~~~~sf~tIva~G~n~A~ 529 (559)
+||++||+.||+|..+-+.+ +..+.+.++|| +|-.||....+++-.. ..|+.+..|++ +.--|--.
T Consensus 5 ikt~~eiek~r~Ag~i~a~~----l~~~~~~v~pG--vtt~Eld~~~~~~i~~~ga~pa~~gy~g~~~~~--ciSvNe~v 76 (255)
T COG0024 5 IKTPEEIEKMREAGKIAAKA----LKEVASLVKPG--VTTLELDEIAEEFIREKGAYPAFLGYKGFPFPT--CISVNEVV 76 (255)
T ss_pred cCCHHHHHHHHHHHHHHHHH----HHHHHHHcCCC--CCHHHHHHHHHHHHHHcCceehhccCcCCCcce--Eeehhhee
Confidence 89999999999997665544 55666789999 9999999999997432 35666644543 44457777
Q ss_pred ccccCCCCCCceecCCCcEEEecCccccc
Q psy6861 530 PHYTPSNATNVVVRGDAPLLVDSGGHYMV 558 (559)
Q Consensus 530 ~Hy~~~~~t~~~i~~gd~vliDsG~~Y~~ 558 (559)
+||.|+ .++.|++||+|-||.|++++.
T Consensus 77 ~HgiP~--d~~vlk~GDiv~IDvg~~~dG 103 (255)
T COG0024 77 AHGIPG--DKKVLKEGDIVKIDVGAHIDG 103 (255)
T ss_pred eecCCC--CCcccCCCCEEEEEEEEEECC
Confidence 999998 478899999999999999864
No 72
>KOG2738|consensus
Probab=98.07 E-value=1.6e-05 Score=77.79 Aligned_cols=94 Identities=13% Similarity=0.118 Sum_probs=74.8
Q ss_pred hcCCHHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCcCHHHHHHHHHHHHHhcCCCCC----CCcccccccCCCCccc
Q psy6861 455 AQKNDVEIKGMHEAHIRDAVIFCDAMAFVEDQYFRGEDITETSVAHILDSHRTENTISRG----ISFESIVAYGEHAALP 530 (559)
Q Consensus 455 aiKn~~EI~~~R~A~i~d~~Al~~~~~~l~~~l~~G~~~tE~ei~~~l~~~r~~~~g~~~----~sf~tIva~G~n~A~~ 530 (559)
.|++++||++||+|++..... +......++|| +|..||...+...--+...+-+ ..|+--+++--|--|+
T Consensus 115 ~i~~~e~ie~mR~ac~Larev----Ld~Aa~~v~Pg--vTTdEiD~~VH~a~Ierg~YPSPLnYy~FPKS~CTSVNEviC 188 (369)
T KOG2738|consen 115 KILDPEGIEGMRKACRLAREV----LDYAATLVRPG--VTTDEIDRAVHNAIIERGAYPSPLNYYGFPKSVCTSVNEVIC 188 (369)
T ss_pred eccCHHHHHHHHHHHHHHHHH----HHHHhhhcCCC--ccHHHHHHHHHHHHHhcCCcCCCcccCCCchhhhcchhheee
Confidence 478999999999998766533 44445679999 9999999999887433333332 2588888888999999
Q ss_pred cccCCCCCCceecCCCcEEEecCcccc
Q psy6861 531 HYTPSNATNVVVRGDAPLLVDSGGHYM 557 (559)
Q Consensus 531 Hy~~~~~t~~~i~~gd~vliDsG~~Y~ 557 (559)
|+.|. .|+|++||++-||.-..|+
T Consensus 189 HGIPD---~RpLedGDIvNiDVtvY~~ 212 (369)
T KOG2738|consen 189 HGIPD---SRPLEDGDIVNIDVTVYLN 212 (369)
T ss_pred cCCCC---cCcCCCCCEEeEEEEEEec
Confidence 99999 9999999999999977665
No 73
>KOG1189|consensus
Probab=97.23 E-value=0.012 Score=64.80 Aligned_cols=199 Identities=13% Similarity=0.248 Sum_probs=118.8
Q ss_pred hhhhcCccCCCCCCCcceeEEEEEeCCeEEEEecCCccCHHHHHhhc-c---cCCCCCcceEEEe--------chhHHHH
Q psy6861 340 IAWLLNIRAWDLPHSPFLRAYLAITESQVYLYTDEKKLSNAVRMYLH-I---DSCTSPLCVRVKE--------YEKVWND 407 (559)
Q Consensus 340 i~yltn~rg~di~~~Pv~~~~llv~~~~~~lfv~~~~~~~~~~~~l~-~---~~~~~~~~v~v~~--------y~~~~~~ 407 (559)
.-||+|+--.| ..+++..+.+++++...+..- .+... . ........+-+++ ++++.++
T Consensus 20 ~~WLlGYEfpd--------Tilv~~~~~i~iltSkkKa~~--l~~~~~~~~~~~~~~~v~llvR~k~d~n~~~fdkii~~ 89 (960)
T KOG1189|consen 20 FTWLLGYEFPD--------TILVLCKDKIYILTSKKKAEF--LQKVTNLAQSSEGKPTVNLLVRDKNDDNKGLFDKIIKA 89 (960)
T ss_pred HHHHhccccCc--------eEEEEecCcEEEEecchhHHH--HHhhcccccCcccCcceEEEecccCccccccHHHHHHH
Confidence 35999987544 466777778877776654321 11110 0 0000011122231 2334444
Q ss_pred HHhhccCCCEEEEcCCCCcccchhHHHHHHcCCC--CeecCCChhHHHHhcCCHHHHHHHHHHHHHhHHHHHHHH-HHHH
Q psy6861 408 LRNIGLYWNRIWLPSQIAYSAGVSKAITTLFSPD--KRYAAPSPIIEMKAQKNDVEIKGMHEAHIRDAVIFCDAM-AFVE 484 (559)
Q Consensus 408 L~~l~~~~~~I~id~~~~~~~~~~~~l~~~l~~~--~~v~~~~~i~~lRaiKn~~EI~~~R~A~i~d~~Al~~~~-~~l~ 484 (559)
++. .+++||+-....++....-..-..|.+. +.++.+-.+..|=++|.+.||+.+|+|+....+.|.+++ ..+.
T Consensus 90 ik~---~gk~vGvf~ke~~~G~F~~~W~~~l~~~~fn~vDis~~ls~l~avKDd~Ei~~irksa~~s~~vm~k~~~~~~~ 166 (960)
T KOG1189|consen 90 IKS---AGKKVGVFAKEKFQGEFMESWNKRLEAGGFNKVDISLGLSKLFAVKDDEEIANIRKSAAASSAVMNKYLVDELV 166 (960)
T ss_pred HHh---cCCeeeeecccccchhHHHHHHHHhhhcCCceeehhhhhhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 3578998655434333444444556543 445555568999999999999999999777766676554 3444
Q ss_pred HhccCCCCcCHHHHHHHHHHHHHhc---CCC----CCCCcccccccCCCCcc-ccccCCCCCCceecCCCcEEEecCccc
Q psy6861 485 DQYFRGEDITETSVAHILDSHRTEN---TIS----RGISFESIVAYGEHAAL-PHYTPSNATNVVVRGDAPLLVDSGGHY 556 (559)
Q Consensus 485 ~~l~~G~~~tE~ei~~~l~~~r~~~---~g~----~~~sf~tIva~G~n~A~-~Hy~~~~~t~~~i~~gd~vliDsG~~Y 556 (559)
+.+..++.+|-.-++..++.+...+ .|. ....|++|+.+|.+-.+ |....+ +..| + ++++-+|++|
T Consensus 167 ~aiD~ekkvthskLsD~~e~~I~~~k~s~~l~~~~~d~cY~PIiqSGg~ydlk~sa~s~---~~~L--~-~I~cs~G~Ry 240 (960)
T KOG1189|consen 167 EAIDEEKKVTHSKLSDLMESAIEDKKYSPGLDPDLLDMCYPPIIQSGGKYDLKPSAVSD---DNHL--H-VILCSLGIRY 240 (960)
T ss_pred HHhhccchhhhHHHHHHHHHHhhccccCcccCccccccccChhhhcCCccccccccccc---cccc--c-eEEeeccchh
Confidence 5566665577777777776653221 111 12358899999888765 333333 6666 3 9999999999
Q ss_pred c
Q psy6861 557 M 557 (559)
Q Consensus 557 ~ 557 (559)
+
T Consensus 241 n 241 (960)
T KOG1189|consen 241 N 241 (960)
T ss_pred h
Confidence 5
No 74
>KOG2775|consensus
Probab=97.04 E-value=0.0011 Score=65.22 Aligned_cols=108 Identities=10% Similarity=0.001 Sum_probs=80.7
Q ss_pred CCCceEEEEEEEEcC-ccceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhc-----C-
Q psy6861 2 ENTGLFRLILARIDG-TTDVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLWKLG-----R- 74 (559)
Q Consensus 2 ~~~~~~~~~G~~~~G-~aD~tRT~~vG~~~~~~~~~~~~~~~a~~~~~~~~~~~G~~~~~i~~~~~~~~~~~g-----~- 74 (559)
.+|..-+++|..++| .-|++-|+.+ .+....+..++++|....+..+-- .++..||++++++++.+|. .
T Consensus 163 ydDV~KiDfGthi~GrIiDsAFTv~F---~p~~d~Ll~AvreaT~tGIkeaGi-DvRlcdiG~aiqEVmeSyEvEi~Gk~ 238 (397)
T KOG2775|consen 163 YDDVMKIDFGTHIDGRIIDSAFTVAF---NPKYDPLLAAVREATNTGIKEAGI-DVRLCDIGEAIQEVMESYEVEINGKT 238 (397)
T ss_pred ecceEEEeccccccCeEeeeeeEEee---CccccHHHHHHHHHHhhhhhhcCc-eeeehhhhHHHHHHhhheEEEeCCce
Confidence 356667799999999 9999999987 344555677788877766555432 4799999999999999853 2
Q ss_pred ----CCCCCceecCCCCCCCCCC---cccccCCCcccccccccccceEeCCCC
Q psy6861 75 ----DYPHGTGHGIGAFSSVHEC---TISFVQNNTDIYSSILTKVILLLSPEP 120 (559)
Q Consensus 75 ----~~~~~~GHgiGl~~~~hE~---P~~~~~~~~~~~~~~~l~~GMV~tiEP 120 (559)
.+.+..||+|+-| .+|-+ |.+ ..+.. ..+++|-+++||.
T Consensus 239 ~~VKpIrnLnGHSI~~y-rIH~gksVPiV-kgge~-----trmee~e~yAIET 284 (397)
T KOG2775|consen 239 YQVKPIRNLNGHSIAQY-RIHGGKSVPIV-KGGEQ-----TRMEEGEIYAIET 284 (397)
T ss_pred ecceeccccCCCcccce-EeecCccccee-cCCcc-----eeecCCeeEEEEe
Confidence 3467789999986 88875 432 33332 4699999999995
No 75
>KOG2775|consensus
Probab=95.78 E-value=0.063 Score=53.16 Aligned_cols=90 Identities=21% Similarity=0.334 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCcCHHHHHHHHHHHH----HhcCCCCCCCcccccccCCCCccccccCC
Q psy6861 460 VEIKGMHEAHIRDAVIFCDAMAFVEDQYFRGEDITETSVAHILDSHR----TENTISRGISFESIVAYGEHAALPHYTPS 535 (559)
Q Consensus 460 ~EI~~~R~A~i~d~~Al~~~~~~l~~~l~~G~~~tE~ei~~~l~~~r----~~~~g~~~~sf~tIva~G~n~A~~Hy~~~ 535 (559)
....-+|+| +.|+-++-.++...++|| ||=.||++.|+..- .+..-..|..|+|-++- |..-.||.|+
T Consensus 83 ~i~~d~rra----AE~HRqvR~yv~s~ikPG--mtm~ei~e~iEnttR~li~e~gl~aGi~FPtG~Sl--N~cAAHyTpN 154 (397)
T KOG2775|consen 83 DIYQDLRRA----AEAHRQVRKYVQSIIKPG--MTMIEICETIENTTRKLILENGLNAGIGFPTGCSL--NHCAAHYTPN 154 (397)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHhccCc--ccHHHHHHHHHHHHHHHHHhccccccccCCCcccc--cchhhhcCCC
Confidence 344455655 345556667777889999 99999999997641 22334557889886554 4445899998
Q ss_pred CCCCceecCCCcEEEecCcccc
Q psy6861 536 NATNVVVRGDAPLLVDSGGHYM 557 (559)
Q Consensus 536 ~~t~~~i~~gd~vliDsG~~Y~ 557 (559)
.+....|+.+|+.-||+|.+-.
T Consensus 155 aGd~tVLqydDV~KiDfGthi~ 176 (397)
T KOG2775|consen 155 AGDKTVLKYDDVMKIDFGTHID 176 (397)
T ss_pred CCCceeeeecceEEEecccccc
Confidence 7767889999999999998764
No 76
>PF05195 AMP_N: Aminopeptidase P, N-terminal domain; InterPro: IPR007865 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This N-terminal domain is associated with N-terminal region of aminopeptidase P (X-Pro aminopeptidase I and II, 3.4.11.9 from EC) and related sequences. It is not found associated with methionyl aminopeptidase 1 (IPR002467 from INTERPRO) or methionyl aminopeptidase 2 (IPR002468 from INTERPRO) families. The domain is structurally very similar [] to the creatinase N-terminal domain (IPR000587 from INTERPRO), however, little or no sequence similarity exists between the two domains. The sequences belong to MEROPS peptidase family M24B, clan MG.; GO: 0004177 aminopeptidase activity, 0030145 manganese ion binding; PDB: 3IG4_B 2OKN_A 2IW2_B 1WBQ_A 2BH3_A 1WLR_A 2V3Z_A 1W2M_B 2BWT_A 2BWW_A ....
Probab=95.24 E-value=0.069 Score=47.79 Aligned_cols=104 Identities=13% Similarity=0.115 Sum_probs=58.2
Q ss_pred CccHHHHHHHHHHHHHhCCCCEEEEccc----------------chhhhhcCccCCCCCCCcceeEEEEE-eC--CeEEE
Q psy6861 310 GESYQNKFERVRRILRSVDCDALIVTAL----------------DEIAWLLNIRAWDLPHSPFLRAYLAI-TE--SQVYL 370 (559)
Q Consensus 310 g~~~~~Ri~rlr~~m~~~~~dalilt~~----------------dni~yltn~rg~di~~~Pv~~~~llv-~~--~~~~l 370 (559)
.+++++|+++|.+.|.+.+ ++|+.+. .|+.||||+.-.| +++++ .. ++.+|
T Consensus 3 ~~~~~~RR~~l~~~l~~~~--~vil~~~~~~~~~~D~~y~FrQ~s~F~YLTG~~ep~--------~~lvl~~~~~~~~~L 72 (134)
T PF05195_consen 3 AEEYAERRKKLAEKLPDNS--IVILPGGPEKYRSNDIEYPFRQDSNFYYLTGFNEPD--------AVLVLKDGESGKSTL 72 (134)
T ss_dssp HHHHHHHHHHHHHHSHSSE--EEEEE----EEEETTEEE-----HHHHHHH---STT---------EEEEEECTTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCc--EEEEECCCeeeecCCCccccccCCcEEEEeCCCCCC--------EEEEEecCCCCeEEE
Confidence 4678999999999998733 3444332 3899999988655 67777 33 37889
Q ss_pred EecCCccCHHHHHhh--cccCCCCCcce-EEEechhHHHHHHhhccCCCEEEEcCC
Q psy6861 371 YTDEKKLSNAVRMYL--HIDSCTSPLCV-RVKEYEKVWNDLRNIGLYWNRIWLPSQ 423 (559)
Q Consensus 371 fv~~~~~~~~~~~~l--~~~~~~~~~~v-~v~~y~~~~~~L~~l~~~~~~I~id~~ 423 (559)
|++......+++.-. +........++ ++.+.+++.+.|.++.+...++..+..
T Consensus 73 F~~~~d~~~e~W~G~~~~~e~a~~~~gvd~v~~~~~l~~~l~~~~~~~~~~~~~~~ 128 (134)
T PF05195_consen 73 FVPPKDPDDEIWDGPRPGPEEAKEIYGVDEVYYIDELEEVLSELLKRSRTVYYDLG 128 (134)
T ss_dssp EE----CCGHHCCSS--HHHHHHHHHT-SEEEEGGGHHHHHHHHHTTTSCEEE-TT
T ss_pred EeCCCCcCccEECccCCCHHHHHHHhCCCEEEEHHHHHHHHHHHHcCCCEEEEECC
Confidence 999765444432100 00000001134 677778888888888765556776643
No 77
>KOG2776|consensus
Probab=94.17 E-value=0.18 Score=51.30 Aligned_cols=72 Identities=14% Similarity=0.086 Sum_probs=57.0
Q ss_pred CCCceEEEEEEEEcC-ccceeeEEEcCCCC-----HHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhcC
Q psy6861 2 ENTGLFRLILARIDG-TTDVSRTLHLGSPT-----REQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLWKLGR 74 (559)
Q Consensus 2 ~~~~~~~~~G~~~~G-~aD~tRT~~vG~~~-----~~~~~~~~~~~~a~~~~~~~~~~~G~~~~~i~~~~~~~~~~~g~ 74 (559)
+||.|-+++|++++| .+-++-|++|+.++ -...++..++.-|+.++ ..+++||.+-..|-+++.+.+.+++.
T Consensus 105 ~GDvVKIdLG~HiDGfiA~vaHT~VV~~~~~~~vtG~kADvI~AAh~A~eaa-~rllkpgn~n~~vT~~i~k~aas~~c 182 (398)
T KOG2776|consen 105 EGDVVKIDLGVHIDGFIALVAHTIVVGPAPDTPVTGRKADVIAAAHLAAEAA-LRLLKPGNTNTQVTRAIVKTAASYGC 182 (398)
T ss_pred CCCEEEEEeeeeeccceeeeeeeEEeccCCCCcccCchhHHHHHHHHHHHHH-HHHhCCCCCCchhhHHHHHHHHHhCC
Confidence 689999999999999 99999999997644 44556666666665544 45556799888999999999988764
No 78
>KOG2776|consensus
Probab=93.76 E-value=0.27 Score=50.17 Aligned_cols=97 Identities=18% Similarity=0.244 Sum_probs=66.6
Q ss_pred HhcCCHHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCcCHHHHHHHHHHH---------HHhcCCCCCCCcccccccC
Q psy6861 454 KAQKNDVEIKGMHEAHIRDAVIFCDAMAFVEDQYFRGEDITETSVAHILDSH---------RTENTISRGISFESIVAYG 524 (559)
Q Consensus 454 RaiKn~~EI~~~R~A~i~d~~Al~~~~~~l~~~l~~G~~~tE~ei~~~l~~~---------r~~~~g~~~~sf~tIva~G 524 (559)
+.|-++.-+...|.|..+...+ +..+-+...+| .+=.||+.+-..+ +..+.-..|..|+|-++.
T Consensus 13 ~tia~~~vvtKYk~AgeI~n~~----lk~V~~~~~~g--asv~eiC~~GD~~i~E~t~kiYK~eK~~~KGIAfPT~Isv- 85 (398)
T KOG2776|consen 13 KTIANDSVVTKYKMAGEIVNKV----LKSVVELCQPG--ASVREICEKGDSLILEETGKIYKKEKDFEKGIAFPTSISV- 85 (398)
T ss_pred cccccHHHHhhhhhHHHHHHHH----HHHHHHHhcCC--chHHHHHHhhhHHHHHHHHHHHhhhhhhhccccccceecc-
Confidence 3455666677777785444444 45555667888 6666766443332 222455668899997765
Q ss_pred CCCccccccCCCCC-CceecCCCcEEEecCccccc
Q psy6861 525 EHAALPHYTPSNAT-NVVVRGDAPLLVDSGGHYMV 558 (559)
Q Consensus 525 ~n~A~~Hy~~~~~t-~~~i~~gd~vliDsG~~Y~~ 558 (559)
|-..+||.|..+. +..|++||+|-||.|++.++
T Consensus 86 -nncv~h~sPlksd~~~~Lk~GDvVKIdLG~HiDG 119 (398)
T KOG2776|consen 86 -NNCVCHFSPLKSDADYTLKEGDVVKIDLGVHIDG 119 (398)
T ss_pred -cceeeccCcCCCCCcccccCCCEEEEEeeeeecc
Confidence 4447999997654 88999999999999998764
No 79
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=90.40 E-value=2.9 Score=45.81 Aligned_cols=233 Identities=15% Similarity=0.100 Sum_probs=113.9
Q ss_pred CccHHHHHHHHHHHHHhC--CCCEEEEccc--c----------hhhhhcCccCCCCCCCcceeEEEEEeCCeEEEEecCC
Q psy6861 310 GESYQNKFERVRRILRSV--DCDALIVTAL--D----------EIAWLLNIRAWDLPHSPFLRAYLAITESQVYLYTDEK 375 (559)
Q Consensus 310 g~~~~~Ri~rlr~~m~~~--~~dalilt~~--d----------ni~yltn~rg~di~~~Pv~~~~llv~~~~~~lfv~~~ 375 (559)
-+.+..|+.-|+..+.+. ++|.+++.-. + =.-||+|+.-. - ..+++......+.+...
T Consensus 8 e~~F~kR~~~l~~~~ne~dG~p~sllv~lG~s~d~npyqk~taLh~wLLgYEFP------~--Tli~l~~~~~~I~ts~~ 79 (1001)
T COG5406 8 EERFEKRSRDLRKHLNEEDGGPDSLLVMLGKSQDVNPYQKNTALHIWLLGYEFP------E--TLIILDDVCTAITTSKK 79 (1001)
T ss_pred HHHHHHHHHHHHHhhhhccCCCceEEEEeccccccChhhhhhHHHHHHHhccCc------c--eEEEEecceEEEEechh
Confidence 356788999999998554 5666665432 1 24588887621 1 23334444555555433
Q ss_pred ccCHHHHHhhcccCCCCCcceEE------Eechh---HHHHH-HhhccCCCEEEEcCCCCcccc-h--hHHHHHHcCC-C
Q psy6861 376 KLSNAVRMYLHIDSCTSPLCVRV------KEYEK---VWNDL-RNIGLYWNRIWLPSQIAYSAG-V--SKAITTLFSP-D 441 (559)
Q Consensus 376 ~~~~~~~~~l~~~~~~~~~~v~v------~~y~~---~~~~L-~~l~~~~~~I~id~~~~~~~~-~--~~~l~~~l~~-~ 441 (559)
+... +...+. ..+ .+.+.+ ...++ +++.. .-+...++.||+-+...++.- + ...+++.+.. -
T Consensus 80 kA~~-lqk~l~--~~~-~~~v~~n~~~r~k~~eenkKlF~~~i~~i~s~~k~VG~f~kD~~qgkfi~ew~~i~e~vk~ef 155 (1001)
T COG5406 80 KAIL-LQKGLA--ETS-LNIVVRNKDNRTKNMEENKKLFKGSIYVIGSENKIVGDFCKDVLQGKFINEWDSIFEPVKSEF 155 (1001)
T ss_pred hHHH-HHhhhc--cCc-chhhhhhhhhcccCHHHHHHHHhhhheecccCCcccCccchhhhhcccccccchhhhhhhhhc
Confidence 2111 111111 000 011111 11111 22222 222233467776544311100 0 0123333332 3
Q ss_pred CeecCCChhHHHHhcCCHHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCcCHHHHHHHHHHH------HHhc---CCC
Q psy6861 442 KRYAAPSPIIEMKAQKNDVEIKGMHEAHIRDAVIFCDAMAFVEDQYFRGEDITETSVAHILDSH------RTEN---TIS 512 (559)
Q Consensus 442 ~~v~~~~~i~~lRaiKn~~EI~~~R~A~i~d~~Al~~~~~~l~~~l~~G~~~tE~ei~~~l~~~------r~~~---~g~ 512 (559)
+.++.+.-+..|=++|+..||+.+|.+.....+-|.-+...+...+..+..+|-..+.++++.. .... .|-
T Consensus 156 N~~DvslgLsk~~~~KD~~E~an~~~ss~~s~~~M~~~~~em~~~~D~~~kit~~KlsD~mes~iddv~f~q~~s~~l~~ 235 (1001)
T COG5406 156 NASDVSLGLSKMFLTKDAEEIANCRASSAASSVLMRYFVKEMEMLWDGAFKITHGKLSDLMESLIDDVEFFQTKSLKLGD 235 (1001)
T ss_pred chhhhhhhhhHHhccccHHHHhhccccchHHHHHHHHHHHHHHHHHhhhhhhccchHHHHhhhhcchhhhhhhcCccccc
Confidence 4556666788999999999999999996555544443333333333333224544555555441 1000 010
Q ss_pred C-----CCCcccccccCCCCcc-ccccCCCCCCceecCCCcEEEecCccccc
Q psy6861 513 R-----GISFESIVAYGEHAAL-PHYTPSNATNVVVRGDAPLLVDSGGHYMV 558 (559)
Q Consensus 513 ~-----~~sf~tIva~G~n~A~-~Hy~~~~~t~~~i~~gd~vliDsG~~Y~~ 558 (559)
. .-.|.+|+.+|..--+ |..... +..+. ||.||+-+|-.|+.
T Consensus 236 ~~~d~lew~ytpiiqsg~~~Dl~psa~s~---~~~l~-gd~vl~s~GiRYn~ 283 (1001)
T COG5406 236 IDLDQLEWCYTPIIQSGGSIDLTPSAFSF---PMELT-GDVVLLSIGIRYNG 283 (1001)
T ss_pred cchhhhhhhcchhhccCceeecccccccC---chhhc-CceEEEEeeeeecc
Confidence 0 0135688888765432 222222 44444 67999999999963
No 80
>TIGR03241 arg_catab_astB succinylarginine dihydrolase. Members of this family are succinylarginine dihydrolase (EC 3.5.3.23), the second of five enzymes in the arginine succinyltransferase (AST) pathway.
Probab=71.85 E-value=11 Score=39.30 Aligned_cols=154 Identities=16% Similarity=0.217 Sum_probs=95.1
Q ss_pred CCCCCCC-CccccccccccCccHHHHHHHHHHHHHhCCCCEEEEcccc-------h-hhhhcCccCCCCCCCcceeEEEE
Q psy6861 292 NRPLYST-HDAFIIQNEIAGESYQNKFERVRRILRSVDCDALIVTALD-------E-IAWLLNIRAWDLPHSPFLRAYLA 362 (559)
Q Consensus 292 ~rP~~~~-~~i~~~~~~~~g~~~~~Ri~rlr~~m~~~~~dalilt~~d-------n-i~yltn~rg~di~~~Pv~~~~ll 362 (559)
|--...+ +-+|.|...| ......+++||++|...+.+-.++--++ . -.||+|-. .+-
T Consensus 249 DVIaV~N~~vLf~He~AF--~d~~~~~~~ir~k~~~~~~~~~~ieVp~~~vsv~DAV~sYLFNSQ------------Llt 314 (443)
T TIGR03241 249 DVIAVSNRNVLFHHQQAF--LNQSQVLDELRAKLAGLGQQFVAIEVPDAEVSVADAVSSYLFNSQ------------LLS 314 (443)
T ss_pred ceEEecCcceeeEhHhhh--cCHHHHHHHHHHHhhccCCCeEEEEeccccCcHHHHHHHhhhcce------------eee
Confidence 3333333 3467788888 5566779999999987666655544432 1 24777743 233
Q ss_pred EeCCeEEEEecCCccCHHHHHhhcccCCCCCcceEEEechhHHHHHHhhccCC----CEEEEcCCCCcccchhHHHHHHc
Q psy6861 363 ITESQVYLYTDEKKLSNAVRMYLHIDSCTSPLCVRVKEYEKVWNDLRNIGLYW----NRIWLPSQIAYSAGVSKAITTLF 438 (559)
Q Consensus 363 v~~~~~~lfv~~~~~~~~~~~~l~~~~~~~~~~v~v~~y~~~~~~L~~l~~~~----~~I~id~~~~~~~~~~~~l~~~l 438 (559)
.+.++..|++|... ++. ..++.+|.++...+ .-..+|-.. ..
T Consensus 315 ~pdg~M~Lv~P~Ec-----r~n-----------------~~v~~yl~~l~~~~~PI~~v~~fDlrq------------SM 360 (443)
T TIGR03241 315 REDGKMMLVVPEEC-----REN-----------------AAVWAYLNELVAGGGPIDEVRVFDLRE------------SM 360 (443)
T ss_pred cCCCcEEEEechHh-----hcC-----------------HHHHHHHHHHHhcCCCcceEEEecchh------------hh
Confidence 34456777776531 111 12345565554321 222334322 22
Q ss_pred CCCCeecCCChhHHHHhcCCHHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCcCHHHHH
Q psy6861 439 SPDKRYAAPSPIIEMKAQKNDVEIKGMHEAHIRDAVIFCDAMAFVEDQYFRGEDITETSVA 499 (559)
Q Consensus 439 ~~~~~v~~~~~i~~lRaiKn~~EI~~~R~A~i~d~~Al~~~~~~l~~~l~~G~~~tE~ei~ 499 (559)
.+ -+...+.++|.+-|+.|++.+-.+.+.+..-+.+.-.|+++..+.- ++..+++
T Consensus 361 ~N----GGGPACLRLRVvl~~~E~~Avnp~~lm~~~l~~~L~~wV~~hYRdr--L~~~DLa 415 (443)
T TIGR03241 361 RN----GGGPACLRLRVVLNDAELAAVNPAVMMNDALFATLNAWVDRHYRDR--LSAADLA 415 (443)
T ss_pred hc----CCCceeeeeeeeCCHHHHhhcCcceecCHHHHHHHHHHHHHhcccc--CChhhcc
Confidence 11 1234688999999999999998887777766777888999988876 7777766
No 81
>PF14826 FACT-Spt16_Nlob: FACT complex subunit SPT16 N-terminal lobe domain; PDB: 3BIQ_A 3BIT_A 3BIP_A 3CB6_A 3CB5_A.
Probab=62.90 E-value=18 Score=33.49 Aligned_cols=58 Identities=22% Similarity=0.454 Sum_probs=42.1
Q ss_pred ccHHHHHHHHHHHHHhCC------CCEEEEcccc---hh---------hhhcCccCCCCCCCcceeEEEEEeCCeEEEEe
Q psy6861 311 ESYQNKFERVRRILRSVD------CDALIVTALD---EI---------AWLLNIRAWDLPHSPFLRAYLAITESQVYLYT 372 (559)
Q Consensus 311 ~~~~~Ri~rlr~~m~~~~------~dalilt~~d---ni---------~yltn~rg~di~~~Pv~~~~llv~~~~~~lfv 372 (559)
+.+.+|+++|.+..++.+ +|++++.... +. .||+|+.-.| ..++++.+..++++
T Consensus 4 ~~F~~RL~~L~~~W~~~~~~~~~~~dal~i~~G~~~e~~~Y~Ks~aLq~WLlGYEfpd--------Tiiv~tk~~i~~lt 75 (163)
T PF14826_consen 4 ETFHKRLKRLYSSWKEHKDDLWGGADALVIAVGKADEDNPYSKSTALQTWLLGYEFPD--------TIIVFTKKKIHFLT 75 (163)
T ss_dssp HHHHHHHHHHHHHHHCCCHHTSTT-SEEEEEE-S--TTSTT-HHHHHHHHHHSS--SS--------EEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHHhccCccccCCCCEEEEEeCCcccCccchhHHHHHHHHhcccHhh--------hhhhhcCCEEEEEe
Confidence 467899999999999885 8988887652 32 4899987554 67788899888888
Q ss_pred cCCc
Q psy6861 373 DEKK 376 (559)
Q Consensus 373 ~~~~ 376 (559)
...+
T Consensus 76 S~KK 79 (163)
T PF14826_consen 76 SKKK 79 (163)
T ss_dssp EHHH
T ss_pred CHHH
Confidence 6543
No 82
>PRK13281 succinylarginine dihydrolase; Provisional
Probab=61.12 E-value=21 Score=37.36 Aligned_cols=153 Identities=16% Similarity=0.210 Sum_probs=92.3
Q ss_pred CCCCCCC-CccccccccccCccHHHHHHHHHHHHHhCCCCEEEEccc-----ch-hhhhcCccCCCCCCCcceeEEEEEe
Q psy6861 292 NRPLYST-HDAFIIQNEIAGESYQNKFERVRRILRSVDCDALIVTAL-----DE-IAWLLNIRAWDLPHSPFLRAYLAIT 364 (559)
Q Consensus 292 ~rP~~~~-~~i~~~~~~~~g~~~~~Ri~rlr~~m~~~~~dalilt~~-----dn-i~yltn~rg~di~~~Pv~~~~llv~ 364 (559)
|--...+ +-+|.|...|. .....++.||++|.. .+-.+-+.+. |. -.||+|-. .+-.+
T Consensus 250 DVIaV~N~~vLf~He~AF~--d~~~~l~~lr~k~~~-~~~~ieVp~~~vsv~DAV~sYLFNSQ------------Llt~p 314 (442)
T PRK13281 250 DVIAVGNRNVLFCHEQAFL--DQEAVLAELRAKLDG-EFMAIEVPAAEVSVADAVKSYLFNSQ------------LLTLP 314 (442)
T ss_pred ceEEeeCcceeeehHhhhc--CHHHHHHHHHHHcCC-CceEEEeccccCcHHHHHHHhhhcce------------eeecC
Confidence 3333333 33567888884 456678899998865 3434433332 12 24777743 33344
Q ss_pred CCeEEEEecCCccCHHHHHhhcccCCCCCcceEEEechhHHHHHHhhccCC----CEEEEcCCCCcccchhHHHHHHcCC
Q psy6861 365 ESQVYLYTDEKKLSNAVRMYLHIDSCTSPLCVRVKEYEKVWNDLRNIGLYW----NRIWLPSQIAYSAGVSKAITTLFSP 440 (559)
Q Consensus 365 ~~~~~lfv~~~~~~~~~~~~l~~~~~~~~~~v~v~~y~~~~~~L~~l~~~~----~~I~id~~~~~~~~~~~~l~~~l~~ 440 (559)
.++..|++|... ++. ..++.+|.++...+ .-..+|-.. ...+
T Consensus 315 dg~M~Lv~P~Ec-----r~n-----------------~~v~~yl~~lv~~~~PI~~v~~~Dlrq------------SM~N 360 (442)
T PRK13281 315 DGSMALVLPQEC-----REN-----------------PAVWAYLNELVAGDGPIKEVKVFDLRQ------------SMRN 360 (442)
T ss_pred CCcEEEEechHH-----hcC-----------------HHHHHHHHHHHhCCCCcceEEEecchh------------hhhc
Confidence 556777777531 111 12455666655422 223344332 2211
Q ss_pred CCeecCCChhHHHHhcCCHHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCcCHHHHH
Q psy6861 441 DKRYAAPSPIIEMKAQKNDVEIKGMHEAHIRDAVIFCDAMAFVEDQYFRGEDITETSVA 499 (559)
Q Consensus 441 ~~~v~~~~~i~~lRaiKn~~EI~~~R~A~i~d~~Al~~~~~~l~~~l~~G~~~tE~ei~ 499 (559)
-+...+.++|.+-|+.|++.+-.+.+.+..-+.+.-.|+++..+.- ++..+++
T Consensus 361 ----GGGPACLRLRVvl~~~El~Avnp~~lm~~~l~~~L~~wV~~hYRd~--L~~~DLa 413 (442)
T PRK13281 361 ----GGGPACLRLRVVLNEAELAAVNPAVLMNDALFDRLNAWVDRHYRDR--LTPADLA 413 (442)
T ss_pred ----CCCceeeeeeeeCCHHHHHhcCCceecCHHHHHHHHHHHHHhcccc--CChhhcc
Confidence 1234688999999999999998887777766777788999988876 7777766
No 83
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=60.46 E-value=39 Score=33.53 Aligned_cols=141 Identities=16% Similarity=0.179 Sum_probs=83.9
Q ss_pred CCCCCCcccccccccccccCCCCCCcceEEEecCceEEEecchhHHHHhhhcCCC-EEEEEcCCCCCCCHHHHHHhhcCC
Q psy6861 169 FGPEESEEVHPRDERLKFLSGFSGSYGFAVVTATKAALWVTGLDELQADLELSCD-WLLMKSGHPGVPTITEWLKDELGT 247 (559)
Q Consensus 169 ~D~h~~e~~~~~~~~~~~lsgFtGs~g~~vvt~~~a~l~tD~RY~~qa~~ql~~~-~~l~~~~~~~~~~~~~wl~~~l~~ 247 (559)
.||..+.--.++|+|++ +||+-|++.|..+ .+. ++ -.|+-.-...+-.|..-|.+++++
T Consensus 50 aePn~d~~dd~~w~~ve-------dAGV~vv~dD~ea-----------a~~--~Ei~VLFTPFGk~T~~Iarei~~hvpE 109 (340)
T COG4007 50 AEPNRDIMDDEHWKRVE-------DAGVEVVSDDAEA-----------AEH--GEIHVLFTPFGKATFGIAREILEHVPE 109 (340)
T ss_pred ecCCccccCHHHHHHHH-------hcCcEEecCchhh-----------hhc--ceEEEEecccchhhHHHHHHHHhhCcC
Confidence 34444444556699998 8999999877431 111 11 112211112345688889999999
Q ss_pred CcEEeeCCCCCCHHHHHHHHHHHhhCCCEEEecCCCchHHhhccCCCCCCCCcccccc-ccccCccH--HHHHHHHHHHH
Q psy6861 248 GMRVGVDPKLIPNSQFEYLQRELNNATILLVQVVNNLIDQIWIKNRPLYSTHDAFIIQ-NEIAGESY--QNKFERVRRIL 324 (559)
Q Consensus 248 ~~~vg~d~~~~s~~~~~~~~~~l~~~~~~~~~~~~~lvd~iw~~~rP~~~~~~i~~~~-~~~~g~~~--~~Ri~rlr~~m 324 (559)
|+.|+=-=.+-+...|..|+..|+-+.-. +-+. ..-...-|..|++..|+.. -.-.|.++ .+.++|+-+..
T Consensus 110 gAVicnTCT~sp~vLy~~LE~~Lr~kR~d-VGvs-----smHPAgvPGtp~h~~yviagr~t~g~elATeEQi~r~vela 183 (340)
T COG4007 110 GAVICNTCTVSPVVLYYSLEGELRTKRED-VGVS-----SMHPAGVPGTPQHGHYVIAGRSTEGKELATEEQIERCVELA 183 (340)
T ss_pred CcEecccccCchhHHHHHhhhhhcCchhh-cCcc-----ccCCCCCCCCCCCceEEEeccCCCceeeccHHHHHHHHHHH
Confidence 99988555555678899998888643100 0010 0111456667777766654 12223333 56777777778
Q ss_pred HhCCCCEEEEc
Q psy6861 325 RSVDCDALIVT 335 (559)
Q Consensus 325 ~~~~~dalilt 335 (559)
+..|-+++++-
T Consensus 184 es~Gk~~yv~p 194 (340)
T COG4007 184 ESTGKEVYVLP 194 (340)
T ss_pred HhcCCceEecC
Confidence 88787776664
No 84
>COG3710 CadC DNA-binding winged-HTH domains [Transcription]
Probab=48.45 E-value=42 Score=30.49 Aligned_cols=56 Identities=21% Similarity=0.408 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHHhhCCCEEEecCCCchHHhhccCCCCCCCCccccccccccCccHHHHHHHHHHHHHhCCC
Q psy6861 258 IPNSQFEYLQRELNNATILLVQVVNNLIDQIWIKNRPLYSTHDAFIIQNEIAGESYQNKFERVRRILRSVDC 329 (559)
Q Consensus 258 ~s~~~~~~~~~~l~~~~~~~~~~~~~lvd~iw~~~rP~~~~~~i~~~~~~~~g~~~~~Ri~rlr~~m~~~~~ 329 (559)
++...++=|+-.++..| +++. .++|+|.+| .+| ..+-.+..+-|..||+.|++.+-
T Consensus 32 l~~~~~~lL~~L~e~~g-eVvs-k~eL~~~VW-~~~-------------~v~~~~Ltq~I~~LRr~L~d~~~ 87 (148)
T COG3710 32 LGPRELKLLSLLLERAG-EVVS-KDELLDAVW-PGR-------------IVTVNTLTQAISALRRALRDIGD 87 (148)
T ss_pred ecHHHHHHHHHHHhccC-ceec-HHHHHHHhC-CCc-------------eEccChHHHHHHHHHHHHhccCC
Confidence 45556666655555443 6664 679999999 565 22234488899999999999875
No 85
>PF04555 XhoI: Restriction endonuclease XhoI; InterPro: IPR007636 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents type II restriction enzymes such as XhoI (3.1.21.4 from EC), which recognises the double-stranded sequence CTCGAG and cleave after C-1 [].; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=42.51 E-value=40 Score=31.66 Aligned_cols=38 Identities=24% Similarity=0.406 Sum_probs=33.1
Q ss_pred cCCCCCCCCccccccccccCccHHHHHHHHHHHHHhCC
Q psy6861 291 KNRPLYSTHDAFIIQNEIAGESYQNKFERVRRILRSVD 328 (559)
Q Consensus 291 ~~rP~~~~~~i~~~~~~~~g~~~~~Ri~rlr~~m~~~~ 328 (559)
..+|-...+|-|.++..|.|.|+.+|..-+.+.|-..+
T Consensus 134 S~~pVr~~~phFpv~p~F~g~SY~~Ry~ilc~rLv~e~ 171 (196)
T PF04555_consen 134 SRRPVRVSEPHFPVDPEFKGASYLKRYEILCERLVQER 171 (196)
T ss_pred ccCCCcCCCCCCCccHHhcCCcHHHHHHHHHHHHHHhc
Confidence 45777888999999999999999999999988887654
No 86
>smart00862 Trans_reg_C Transcriptional regulatory protein, C terminal. This domain is almost always found associated with the response regulator receiver domain. It may play a role in DNA binding.
Probab=42.14 E-value=50 Score=25.51 Aligned_cols=58 Identities=17% Similarity=0.391 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHHhhCCCEEEecCCCchHHhhccCCCCCCCCccccccccccCccHHHHHHHHHHHHHhCCC
Q psy6861 258 IPNSQFEYLQRELNNATILLVQVVNNLIDQIWIKNRPLYSTHDAFIIQNEIAGESYQNKFERVRRILRSVDC 329 (559)
Q Consensus 258 ~s~~~~~~~~~~l~~~~~~~~~~~~~lvd~iw~~~rP~~~~~~i~~~~~~~~g~~~~~Ri~rlr~~m~~~~~ 329 (559)
+|..+++-|.-.+...+ +.++ .+++++.+| .+.+. .-+-.+....+.+||+.|++.+.
T Consensus 6 Lt~~e~~lL~~L~~~~~-~~vs-~~~l~~~lw-~~~~~-----------~~~~~~l~~~i~~LR~~l~~~~~ 63 (78)
T smart00862 6 LTPKEFRLLELLLRNPG-RVVS-REELLEAVW-GDDDD-----------DVDDNTLDVHISRLRKKLEDDGA 63 (78)
T ss_pred cCHHHHHHHHHHHhCCC-CccC-HHHHHHHHc-CCCCC-----------CCccchHHHHHHHHHHHHhcCCC
Confidence 36667774443444444 3332 478999999 44431 11225678889999999987653
No 87
>cd00383 trans_reg_C Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and a response regulator. The former autophosphorylates in a histidine residue on detecting an external stimulus. The phosphate is then transferred to an invariant aspartate residue in a highly conserved receiver domain of the response regulator. Phosphorylation activates a variable effector domain of the response regulator, which triggers the cellular response. The C-terminal effector domain contains DNA and RNA polymerase binding sites. Several dimers or monomers bind head to tail to small tandem repeats upstream of the genes. The RNA polymerase binding sites interact with the alpha or sigma subunite of RNA polymerase.
Probab=39.99 E-value=44 Score=27.06 Aligned_cols=57 Identities=16% Similarity=0.305 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHhhCCCEEEecCCCchHHhhccCCCCCCCCccccccccccCccHHHHHHHHHHHHHhCCC
Q psy6861 258 IPNSQFEYLQRELNNATILLVQVVNNLIDQIWIKNRPLYSTHDAFIIQNEIAGESYQNKFERVRRILRSVDC 329 (559)
Q Consensus 258 ~s~~~~~~~~~~l~~~~~~~~~~~~~lvd~iw~~~rP~~~~~~i~~~~~~~~g~~~~~Ri~rlr~~m~~~~~ 329 (559)
+|..+++-|.-.+...| +.++ .+.|++.+| .+.+.. +-.....-+.+||++|++.+.
T Consensus 24 Lt~~e~~lL~~L~~~~~-~~vs-~~~l~~~lw-~~~~~~------------~~~~l~~~I~rLRkkl~~~~~ 80 (95)
T cd00383 24 LTPKEFELLELLARNPG-RVLS-REQLLEAVW-GDDYDV------------DDRTVDVHISRLRKKLEDDPS 80 (95)
T ss_pred eCHHHHHHHHHHHhCCC-CcCC-HHHHHHHhc-CCCCCC------------CcccHHHHHHHHHHHhccCCC
Confidence 45566666655555554 4443 578999999 343311 224567789999999987653
No 88
>PF00486 Trans_reg_C: Transcriptional regulatory protein, C terminal; InterPro: IPR001867 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain that is almost always found associated with the response regulator receiver domain (see IPR001789 from INTERPRO). It may play a role in DNA binding [].; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2K4J_A 2JPB_A 1ODD_A 1OPC_A 1KGS_A 2PMU_E 2JZY_A 1GXP_B 1QQI_A 2Z33_A ....
Probab=39.95 E-value=35 Score=26.45 Aligned_cols=57 Identities=21% Similarity=0.447 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHhhCCCEEEecCCCchHHhhccCCCCCCCCccccccccccCccHHHHHHHHHHHHHhCCC
Q psy6861 258 IPNSQFEYLQRELNNATILLVQVVNNLIDQIWIKNRPLYSTHDAFIIQNEIAGESYQNKFERVRRILRSVDC 329 (559)
Q Consensus 258 ~s~~~~~~~~~~l~~~~~~~~~~~~~lvd~iw~~~rP~~~~~~i~~~~~~~~g~~~~~Ri~rlr~~m~~~~~ 329 (559)
+|..+++-|.-.+...+ +.++ .+.|++.+| .+.+ ..+..+....+.+||+.|++.+.
T Consensus 6 Lt~~e~~lL~~L~~~~~-~~vs-~~~l~~~~w-~~~~------------~~~~~~l~~~I~rLR~kL~~~~~ 62 (77)
T PF00486_consen 6 LTPKEFRLLELLLRNPG-RVVS-REELIEALW-GDEE------------DVSDNSLDVHISRLRKKLEDAGG 62 (77)
T ss_dssp SSHHHHHHHHHHHHTTT-SEEE-HHHHHHHHT-SSSS------------TTCTHHHHHHHHHHHHHHHSSTT
T ss_pred cCHHHHHHHHHHHhCCC-CCCC-HHHhCChhh-hccc------------ccchhhHHHHHHHHHHHHhhcCC
Confidence 46677777766665555 3443 578999999 3332 33456778899999999998753
No 89
>TIGR00035 asp_race aspartate racemase.
Probab=35.14 E-value=59 Score=31.63 Aligned_cols=120 Identities=12% Similarity=0.112 Sum_probs=65.5
Q ss_pred CcceEEEecCceEEEecchhHHHHhhhcCCCEEEEEcCCCCCCCHHHHHHhhcCCCcEEeeCCCCCCHHHHHHHHHHHhh
Q psy6861 193 SYGFAVVTATKAALWVTGLDELQADLELSCDWLLMKSGHPGVPTITEWLKDELGTGMRVGVDPKLIPNSQFEYLQRELNN 272 (559)
Q Consensus 193 s~g~~vvt~~~a~l~tD~RY~~qa~~ql~~~~~l~~~~~~~~~~~~~wl~~~l~~~~~vg~d~~~~s~~~~~~~~~~l~~ 272 (559)
.+-.+||..+.+..|.| +.+++++ .-++.+.+ ...+.+.+ ....+||+=+...|...-. +++.|++
T Consensus 75 g~d~iviaCNTah~~~~-----~l~~~~~--iPii~i~~----~~~~~~~~--~~~~~VgvLaT~~T~~s~~-y~~~l~~ 140 (229)
T TIGR00035 75 GADFIIMPCNTAHKFAE-----DIQKAIG--IPLISMIE----ETAEAVKE--DGVKKAGLLGTKGTMKDGV-YEREMKK 140 (229)
T ss_pred CCCEEEECCccHHHHHH-----HHHHhCC--CCEechHH----HHHHHHHH--cCCCEEEEEecHHHHHhHH-HHHHHHH
Confidence 34556666666554443 3333443 23333311 12344432 2457999987777766543 7888888
Q ss_pred CCCEEEecCCCchHHhhccCCCCCCCCccc-cccccccCccHHHHHHHHHHHHHhCCCCEEEEcc
Q psy6861 273 ATILLVQVVNNLIDQIWIKNRPLYSTHDAF-IIQNEIAGESYQNKFERVRRILRSVDCDALIVTA 336 (559)
Q Consensus 273 ~~~~~~~~~~~lvd~iw~~~rP~~~~~~i~-~~~~~~~g~~~~~Ri~rlr~~m~~~~~dalilt~ 336 (559)
.|++.+.....+++.|=. .++ .+...-. ....+++.++-+.|.+.++|++|+.-
T Consensus 141 ~g~~v~~p~~~~~~~i~~---------~i~~~~~~g~~-~~~~~~l~~~~~~l~~~gad~iILgC 195 (229)
T TIGR00035 141 HGIEIVTPDKEEQEAIMS---------GIYDEVKAGNI-ELGRELLLKIAKELEERGAEGIILGC 195 (229)
T ss_pred CCCEEECCCHHHHHHHHH---------HHHHHHhcCCc-HHHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 898877522334333220 001 0000001 34556777788888889999988754
No 90
>PRK11835 hypothetical protein; Provisional
Probab=32.14 E-value=20 Score=30.37 Aligned_cols=13 Identities=31% Similarity=0.723 Sum_probs=10.1
Q ss_pred ccccccCCCCCCc
Q psy6861 182 ERLKFLSGFSGSY 194 (559)
Q Consensus 182 ~~~~~lsgFtGs~ 194 (559)
++-.|+|||+|+-
T Consensus 14 QsYRW~sG~~G~k 26 (114)
T PRK11835 14 QSYRWSAGFAGSK 26 (114)
T ss_pred cceeeccCccCce
Confidence 3467999999974
No 91
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=29.29 E-value=2.1e+02 Score=29.33 Aligned_cols=93 Identities=16% Similarity=0.249 Sum_probs=63.4
Q ss_pred HHHHhhcCCCcEEeeCCCCCCHHHHHHHHHHHhhCC-CEEEecCCCchHHhhccCCC-CCCCCccccccccccCccHHHH
Q psy6861 239 EWLKDELGTGMRVGVDPKLIPNSQFEYLQRELNNAT-ILLVQVVNNLIDQIWIKNRP-LYSTHDAFIIQNEIAGESYQNK 316 (559)
Q Consensus 239 ~wl~~~l~~~~~vg~d~~~~s~~~~~~~~~~l~~~~-~~~~~~~~~lvd~iw~~~rP-~~~~~~i~~~~~~~~g~~~~~R 316 (559)
-|-...-.+..+||+||...-+.+++-+++.+.... +...++ -| ++-| .....-||.|-+=|.-.+=-.-
T Consensus 130 ~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lpl---gv-----E~Lp~~~~FDtVF~MGVLYHrr~Pl~~ 201 (315)
T PF08003_consen 130 SFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPL---GV-----EDLPNLGAFDTVFSMGVLYHRRSPLDH 201 (315)
T ss_pred HHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCc---ch-----hhccccCCcCEEEEeeehhccCCHHHH
Confidence 343333334458999999999999999988885332 222221 12 2223 3456789999999999999999
Q ss_pred HHHHHHHHHhCC---CCEEEEcccch
Q psy6861 317 FERVRRILRSVD---CDALIVTALDE 339 (559)
Q Consensus 317 i~rlr~~m~~~~---~dalilt~~dn 339 (559)
+..+++.|+.-| ++.+++-..++
T Consensus 202 L~~Lk~~L~~gGeLvLETlvi~g~~~ 227 (315)
T PF08003_consen 202 LKQLKDSLRPGGELVLETLVIDGDEN 227 (315)
T ss_pred HHHHHHhhCCCCEEEEEEeeecCCCc
Confidence 999999998766 34555544433
No 92
>PF13989 YejG: YejG-like protein
Probab=26.96 E-value=29 Score=29.14 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=12.8
Q ss_pred CccHHHHHHHHHHHHHhCCCCE
Q psy6861 310 GESYQNKFERVRRILRSVDCDA 331 (559)
Q Consensus 310 g~~~~~Ri~rlr~~m~~~~~da 331 (559)
|++.-+-+++|.+.|++..+|.
T Consensus 48 g~~aw~im~~L~~sL~eiqv~~ 69 (106)
T PF13989_consen 48 GESAWQIMQQLSQSLAEIQVDC 69 (106)
T ss_pred ChHHHHHHHHHHHHHHHhcccc
Confidence 3344445666777777666554
No 93
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=26.75 E-value=1.7e+02 Score=28.62 Aligned_cols=78 Identities=13% Similarity=0.126 Sum_probs=50.0
Q ss_pred CcEEeeCCCCCCHHHHHHHHHHHhhCCCEEEecCCCchHHhhccCCCCCCCCcccc-ccccccCccHHHHHHHHHHHHHh
Q psy6861 248 GMRVGVDPKLIPNSQFEYLQRELNNATILLVQVVNNLIDQIWIKNRPLYSTHDAFI-IQNEIAGESYQNKFERVRRILRS 326 (559)
Q Consensus 248 ~~~vg~d~~~~s~~~~~~~~~~l~~~~~~~~~~~~~lvd~iw~~~rP~~~~~~i~~-~~~~~~g~~~~~Ri~rlr~~m~~ 326 (559)
-++||+=+..+|..+-- +++.|.+.|++.+..+++-...| ++-||. +-..--.+..++...++-+.|++
T Consensus 117 ~kkvgLLgT~~Tm~~~f-Y~~~l~~~gievvvPdd~~q~~v---------~~iIy~El~~G~~~~~sr~~~~~ii~~l~~ 186 (230)
T COG1794 117 AKKVGLLGTRFTMEQGF-YRKRLEEKGIEVVVPDDDEQAEV---------NRIIYEELCQGIVKDASRELYLAVIERLAE 186 (230)
T ss_pred CceeEEeeccchHHhHH-HHHHHHHCCceEecCCHHHHHHH---------HHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 36899999977655432 44667889998874332222221 122233 33333345568889999999999
Q ss_pred CCCCEEEEc
Q psy6861 327 VDCDALIVT 335 (559)
Q Consensus 327 ~~~dalilt 335 (559)
+|+|++|+.
T Consensus 187 ~Gae~vIlG 195 (230)
T COG1794 187 RGAEGVILG 195 (230)
T ss_pred cCCCEEEEe
Confidence 999998874
No 94
>PF07305 DUF1454: Protein of unknown function (DUF1454); InterPro: IPR009918 This family consists of several Enterobacterial sequences of around 200 residues in length, which are often known as YiiQ proteins. The function of this family is unknown.
Probab=26.22 E-value=3.8e+02 Score=25.34 Aligned_cols=75 Identities=20% Similarity=0.089 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHH-hcCCCCCCceecCCCCCCCCCCcccccCCCccccc
Q psy6861 28 SPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLWK-LGRDYPHGTGHGIGAFSSVHECTISFVQNNTDIYS 106 (559)
Q Consensus 28 ~~~~~~~~~~~~~~~a~~~~~~~~~~~G~~~~~i~~~~~~~~~~-~g~~~~~~~GHgiGl~~~~hE~P~~~~~~~~~~~~ 106 (559)
-+.++++..-..+.+= ..+++..+-|..+..+.-+...+.+.+ .|.. +.-|-+|- ++ +++...
T Consensus 112 ~~~~e~kaar~~a~~Y-maAl~r~F~Ptls~eQs~~kl~~lL~~gk~~~---yy~q~~GA---iR---YVvad~------ 175 (200)
T PF07305_consen 112 IQGPEQKAARALAIEY-MAALMRQFEPTLSPEQSQEKLQKLLTKGKGSR---YYSQTEGA---IR---YVVADN------ 175 (200)
T ss_pred CCCHHHHHHHHHHHHH-HHHHHHHcCCcCCHHHHHHHHHHHHHcCCCCc---ceeeccCc---eE---EEEecC------
Confidence 3447777777766663 445566667799988887777777766 2222 23355665 11 232222
Q ss_pred ccccccceEeCCCCc
Q psy6861 107 SILTKVILLLSPEPG 121 (559)
Q Consensus 107 ~~~l~~GMV~tiEP~ 121 (559)
=+.|++|+|||-
T Consensus 176 ---gekglTFAVEPI 187 (200)
T PF07305_consen 176 ---GEKGLTFAVEPI 187 (200)
T ss_pred ---CCceeEEEeeee
Confidence 157999999994
No 95
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=26.09 E-value=2.6e+02 Score=26.51 Aligned_cols=59 Identities=17% Similarity=0.224 Sum_probs=45.6
Q ss_pred CcEEeeCCCCCCHHHHHHHHHHHhhCCCEEEecCCCchHHhhccCCCCCCCCccccccccccCccHHHHHHHHHHHHHhC
Q psy6861 248 GMRVGVDPKLIPNSQFEYLQRELNNATILLVQVVNNLIDQIWIKNRPLYSTHDAFIIQNEIAGESYQNKFERVRRILRSV 327 (559)
Q Consensus 248 ~~~vg~d~~~~s~~~~~~~~~~l~~~~~~~~~~~~~lvd~iw~~~rP~~~~~~i~~~~~~~~g~~~~~Ri~rlr~~m~~~ 327 (559)
|-...+++...|-.+..+.++.+++.|++... .+|+ +|. ..+-+.|-+.
T Consensus 88 g~~~vv~G~i~sd~~~~~~e~~~~~~gl~~~~-------PLW~--~~~----------------------~~ll~e~~~~ 136 (194)
T cd01994 88 GVDAVVFGAILSEYQRTRVERVCERLGLEPLA-------PLWG--RDQ----------------------EELLREMIEA 136 (194)
T ss_pred CCCEEEECccccHHHHHHHHHHHHHcCCEEEe-------cccC--CCH----------------------HHHHHHHHHc
Confidence 56788999999999999999999999987664 4893 321 3466667788
Q ss_pred CCCEEEEccc
Q psy6861 328 DCDALIVTAL 337 (559)
Q Consensus 328 ~~dalilt~~ 337 (559)
|.+++|+.-.
T Consensus 137 g~~~~iv~v~ 146 (194)
T cd01994 137 GFKAIIIKVA 146 (194)
T ss_pred CCeEEEEEec
Confidence 9998886654
No 96
>PF08799 PRP4: pre-mRNA processing factor 4 (PRP4) like; InterPro: IPR014906 This small protein is found on PRP4 ribonuleoproteins. PRP4 is a U4/U6 small nuclear ribonucleoprotein that is involved in pre-mRNA processing. ; PDB: 1MZW_B 2DK4_A.
Probab=25.23 E-value=79 Score=20.45 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=15.0
Q ss_pred ccccccCccHHHHHHHHHHHH
Q psy6861 304 IQNEIAGESYQNKFERVRRIL 324 (559)
Q Consensus 304 ~~~~~~g~~~~~Ri~rlr~~m 324 (559)
.|+.+=||+-.+|.+|+++.|
T Consensus 10 ePi~lFGE~~~~R~~RLr~l~ 30 (30)
T PF08799_consen 10 EPITLFGETDADRRERLRRLL 30 (30)
T ss_dssp --SCETT--HHHHHHHHHHHH
T ss_pred CChhhhCCChHHHHHHHHHhC
Confidence 467888999999999999864
No 97
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=24.07 E-value=1.3e+02 Score=27.98 Aligned_cols=45 Identities=29% Similarity=0.341 Sum_probs=30.7
Q ss_pred HHHHHhhcCCCcEEeeCCCCCCH------HHHHHHHHHHhhCCCEEEecCC
Q psy6861 238 TEWLKDELGTGMRVGVDPKLIPN------SQFEYLQRELNNATILLVQVVN 282 (559)
Q Consensus 238 ~~wl~~~l~~~~~vg~d~~~~s~------~~~~~~~~~l~~~~~~~~~~~~ 282 (559)
.+||.++=-.|-.+-+|-.|++. .+.+.|-..++++|++++.++.
T Consensus 20 ~~~L~~~Gikgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~gi~v~vvSN 70 (175)
T COG2179 20 PDILKAHGIKGVILDLDNTLVPWDNPDATPELRAWLAELKEAGIKVVVVSN 70 (175)
T ss_pred HHHHHHcCCcEEEEeccCceecccCCCCCHHHHHHHHHHHhcCCEEEEEeC
Confidence 36776554455556666666664 4677778888899999886653
No 98
>PTZ00445 p36-lilke protein; Provisional
Probab=23.85 E-value=3.3e+02 Score=26.42 Aligned_cols=91 Identities=18% Similarity=0.156 Sum_probs=58.4
Q ss_pred HHHHHhhcCCCcEEeeCCCCCCHHHHHHHHHHHhhCCCEEEecCCC--chHHh---hccCCCCCCCCccccccccccCcc
Q psy6861 238 TEWLKDELGTGMRVGVDPKLIPNSQFEYLQRELNNATILLVQVVNN--LIDQI---WIKNRPLYSTHDAFIIQNEIAGES 312 (559)
Q Consensus 238 ~~wl~~~l~~~~~vg~d~~~~s~~~~~~~~~~l~~~~~~~~~~~~~--lvd~i---w~~~rP~~~~~~i~~~~~~~~g~~ 312 (559)
.+|+.+-.. ..++| .+-..+..+.+.+.|++.||+++.++-| ||+.- | .+|.. .. ..-+.+
T Consensus 10 ~~~~~~~~~---~~~~~-~~~~~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~--~~~~~--~~------~~~~~~ 75 (219)
T PTZ00445 10 HDAFKEYIE---SGLFD-HLNPHESADKFVDLLNECGIKVIASDFDLTMITKHSGGY--IDPDN--DD------IRVLTS 75 (219)
T ss_pred HHHHHHHHH---hcccc-cCCHHHHHHHHHHHHHHcCCeEEEecchhhhhhhhcccc--cCCCc--ch------hhhhcc
Confidence 345554432 23566 4556677888899999999999987633 44421 5 45531 11 111223
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEcccchhhh
Q psy6861 313 YQNKFERVRRILRSVDCDALIVTALDEIAW 342 (559)
Q Consensus 313 ~~~Ri~rlr~~m~~~~~dalilt~~dni~y 342 (559)
...-...+-+.|++.|+...|+|=.|...+
T Consensus 76 ~tpefk~~~~~l~~~~I~v~VVTfSd~~~~ 105 (219)
T PTZ00445 76 VTPDFKILGKRLKNSNIKISVVTFSDKELI 105 (219)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEEccchhhc
Confidence 333467788899999999999998887773
No 99
>PF14503 YhfZ_C: YhfZ C-terminal domain; PDB: 2OZZ_B.
Probab=20.11 E-value=1.4e+02 Score=29.27 Aligned_cols=37 Identities=30% Similarity=0.519 Sum_probs=20.4
Q ss_pred hhcCCCcEEeeCCCCCCHHHHHHHHHHHhhCCCEEEecC
Q psy6861 243 DELGTGMRVGVDPKLIPNSQFEYLQRELNNATILLVQVV 281 (559)
Q Consensus 243 ~~l~~~~~vg~d~~~~s~~~~~~~~~~l~~~~~~~~~~~ 281 (559)
.++..|.|||+|+. |.+|..--+..++.++++++.++
T Consensus 109 ~~i~dGmRVGiD~~--S~Dq~~LT~~~~~gk~Ve~Vei~ 145 (232)
T PF14503_consen 109 KEIEDGMRVGIDPS--SIDQKILTEAEFEGKNVEFVEIP 145 (232)
T ss_dssp GG-----EEEE-TT---HHHHHHHHHHHTTS--EEEE--
T ss_pred cceeeeeEeecCCC--CccHHHHHHHHhCCCceEEEEec
Confidence 34567899999975 67777766777888889998764
Done!