RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6861
(559 letters)
>gnl|CDD|238518 cd01085, APP, X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known
as X-Pro aminopeptidase, proline aminopeptidase,
aminopeptidase P, and aminoacylproline aminopeptidase.
Catalyses release of any N-terminal amino acid,
including proline, that is linked with proline, even
from a dipeptide or tripeptide.
Length = 224
Score = 176 bits (449), Expect = 7e-52
Identities = 67/133 (50%), Positives = 87/133 (65%), Gaps = 8/133 (6%)
Query: 15 DGTTDVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLWKLGR 74
DGTTD++RT+HLG PT EQ Y+ L G I LA A FP +QLD LAR PLWK G
Sbjct: 95 DGTTDITRTVHLGEPTAEQKRDYTLVLKGHIALARAKFPKGTTGSQLDALARQPLWKAGL 154
Query: 75 DYPHGTGHGIGAFSSVHE--CTISFVQNNTDIYSSILTKVILLLSPEPGYYKEDEFGIRL 132
DY HGTGHG+G+F +VHE +IS +++ K ++LS EPGYYKE ++GIR+
Sbjct: 155 DYGHGTGHGVGSFLNVHEGPQSISPA------PNNVPLKAGMILSNEPGYYKEGKYGIRI 208
Query: 133 EDIFEVVYAAGTD 145
E++ VV A T+
Sbjct: 209 ENLVLVVEAETTE 221
Score = 113 bits (285), Expect = 9e-29
Identities = 36/94 (38%), Positives = 56/94 (59%)
Query: 464 GMHEAHIRDAVIFCDAMAFVEDQYFRGEDITETSVAHILDSHRTENTISRGISFESIVAY 523
GM AHIRD V + +A++E + +GE ITE S A L+ R + G+SF++I +
Sbjct: 1 GMRAAHIRDGVALVEFLAWLEQEVPKGETITELSAADKLEEFRRQQKGYVGLSFDTISGF 60
Query: 524 GEHAALPHYTPSNATNVVVRGDAPLLVDSGGHYM 557
G + A+ HY+P+ +N + D L+DSGG Y+
Sbjct: 61 GPNGAIVHYSPTEESNRKISPDGLYLIDSGGQYL 94
>gnl|CDD|223085 COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and
metabolism].
Length = 384
Score = 99.4 bits (248), Expect = 1e-22
Identities = 58/260 (22%), Positives = 100/260 (38%), Gaps = 31/260 (11%)
Query: 308 IAGESYQNKFERVRRILRSVDCDALIVTALDEIAWLLNIRAWDLPHSPFLRAYLAITESQ 367
A E Y+ + R+R ++ DAL++T+ +L A+ L+A L E +
Sbjct: 5 FADEEYRARLARLRELMEEAGLDALLLTSPSNFYYLTGFDAF---GFERLQALLVPAEGE 61
Query: 368 VYLYTDEKKLSNAVRM---------YLHIDSCTSPLCVRVKEYEKVWNDL-RNIGLYWNR 417
L+ + A D + + + + IG+
Sbjct: 62 PVLFVRGRDEEAAKETSWIKLENVEVYEDDEDPAAPLDLLGALLEELGLAGKRIGIESAS 121
Query: 418 IWLPSQIAYSAGVSKAITTLFSPDKRY-AAPSPIIEMKAQKNDVEIKGMHEAHIRDAVIF 476
I+L +A + A+ P A + ++ K+ EI + +A
Sbjct: 122 IFLT--LAAFERLQAAL-----PRAELVDASDLVDRLRLIKSPAEIAKIRKAAEIADAAL 174
Query: 477 CDAMAFVEDQYFRGEDITETSVAHILDSHRTENTISRGISFESIVAYGEHAALPHYTPSN 536
A+ + +TE +A L+ + G SF++IVA GE+AALPHYTPS+
Sbjct: 175 EAALEAIR------PGMTEAEIAAELEYALRKGGA-EGPSFDTIVASGENAALPHYTPSD 227
Query: 537 ATNVVVRGDAPLLVDSGGHY 556
+R +L+D GG Y
Sbjct: 228 RK---LRDGDLVLIDLGGVY 244
Score = 94.0 bits (234), Expect = 1e-20
Identities = 37/124 (29%), Positives = 53/124 (42%), Gaps = 8/124 (6%)
Query: 15 DGTTDVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLWK--L 72
+D++RT +G P+ EQ E Y L A+ P ++D AR L K
Sbjct: 246 GYCSDITRTFPIGKPSDEQREIYEAVLEAQEAAIAAIRPGVTGG-EVDAAARQVLEKAGY 304
Query: 73 GRDYPHGTGHGIGAFSSVHECTISFVQNNTDIYSSILTKVILLLSPEPGYYKEDEFGIRL 132
G + HGTGHG+G VHE + + ++ S EPG Y G+R+
Sbjct: 305 GLYFLHGTGHGVGFVLDVHEHPQYLSPGSD-----TTLEPGMVFSIEPGIYIPGGGGVRI 359
Query: 133 EDIF 136
ED
Sbjct: 360 EDTV 363
>gnl|CDD|215993 pfam00557, Peptidase_M24, Metallopeptidase family M24. This family
contains metallopeptidases. It also contains
non-peptidase homologues such as the N terminal domain
of Spt16 which is a histone H3-H4 binding module.
Length = 208
Score = 81.6 bits (202), Expect = 1e-17
Identities = 43/135 (31%), Positives = 58/135 (42%), Gaps = 19/135 (14%)
Query: 12 ARIDG-TTDVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLW 70
A DG +D++RT +G PT EQ E Y L AV P + +D AR L
Sbjct: 83 AEYDGYHSDITRTFVVGKPTPEQRELYEAVLEAQEAAIAAVKP-GVTGGDVDAAAREVLE 141
Query: 71 K--LGRDYPHGTGHGIGAFSSVHECTISFVQNNTDIYSSILTKVIL----LLSPEPGYYK 124
+ G +PHG GHGIG VH+ + D +L + + EPG Y
Sbjct: 142 EGGYGEYFPHGLGHGIGL--DVHDEGPYISRGGND--------RVLEPGMVFTIEPGIYF 191
Query: 125 EDE-FGIRLEDIFEV 138
G+R+ED V
Sbjct: 192 IPGWGGVRIEDTVLV 206
Score = 66.5 bits (163), Expect = 1e-12
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 463 KGMHEAHIRDAVIFCDAMAFVEDQYFRGEDITETSVAHILDSHRTENTISRGISFESIVA 522
+ M +A A A+A + +TE +A L++ +RG +F IVA
Sbjct: 1 ELMRKAARIAAAALEAALAAIR------PGVTERELAAELEAAFLARGGARGPAFPPIVA 54
Query: 523 YGEHAALPHYTPSNATNVVVRGDAPLLVDSGGHY 556
G +AA+PHY PS+ V+ GD +L+D G Y
Sbjct: 55 SGPNAAVPHYIPSDR--VLKDGD-LVLIDVGAEY 85
>gnl|CDD|238525 cd01092, APP-like, Similar to Prolidase and Aminopeptidase P. The
members of this subfamily presumably catalyse hydrolysis
of Xaa-Pro dipeptides and/or release of any N-terminal
amino acid, including proline, that is linked with
proline.
Length = 208
Score = 59.1 bits (144), Expect = 5e-10
Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 34/137 (24%)
Query: 12 ARIDG-TTDVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHS----------NQ 60
A DG +D++RT+ +G P+ E E Y V A + +
Sbjct: 83 AIYDGYCSDITRTVAVGEPSDELKEIYE-----------IVLEAQQAAIKAVKPGVTAKE 131
Query: 61 LDILARAPLWK--LGRDYPHGTGHGIGAFSSVHE-CTISFVQNNTDIYSSILTKVILLLS 117
+D AR + + G + H TGHG+G VHE IS + D+ + ++ +
Sbjct: 132 VDKAARDVIEEAGYGEYFIHRTGHGVG--LEVHEAPYIS--PGSDDV-----LEEGMVFT 182
Query: 118 PEPGYYKEDEFGIRLED 134
EPG Y + G+R+ED
Sbjct: 183 IEPGIYIPGKGGVRIED 199
Score = 56.7 bits (138), Expect = 3e-09
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 488 FRGEDITETSVAHILDSHRTENTISRGISFESIVAYGEHAALPHYTPSNATNVVVRGDAP 547
F +TE VA L+ + G SF++IVA G ++ALPH PS+ + GD
Sbjct: 21 FIKPGMTEREVAAELEYFMRKLGAE-GPSFDTIVASGPNSALPHGVPSD--RKIEEGD-L 76
Query: 548 LLVDSGGHY 556
+L+D G Y
Sbjct: 77 VLIDFGAIY 85
>gnl|CDD|216431 pfam01321, Creatinase_N, Creatinase/Prolidase N-terminal domain.
This family includes the N-terminal non-catalytic
domains from creatinase and prolidase. The exact
function of this domain is uncertain.
Length = 128
Score = 55.8 bits (135), Expect = 2e-09
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Query: 179 PRDERLKFLSGFSGSYGFA-VVTATKAALWVTGLDELQADLELSCDWLLMKSGHPGVPTI 237
E +++L+GF+GS G A VVTA A L L +A E L + +
Sbjct: 20 TSPENIRYLTGFTGSRGLALVVTADGATLLTDALRYTEAAEE--SVPDLEVIEYDDAEAL 77
Query: 238 TEWLKDELGTGMRVGVDPKLIPNSQFEYLQRELNNATI 275
+ LK+ R+G + + +++E L+ L +A +
Sbjct: 78 ADLLKELGLELKRLGFEGDHLTVAEYERLKEALPDAEL 115
Score = 33.4 bits (77), Expect = 0.10
Identities = 29/136 (21%), Positives = 50/136 (36%), Gaps = 16/136 (11%)
Query: 318 ERVRRILRSVDCDALIVTALDEIAWLLNIRAWDLPHSPFLRAYLAITESQVYLYTDEKKL 377
ER+R ++ DAL++T+ + I +L S L L +T L TD +
Sbjct: 3 ERLRELMAEAGLDALLLTSPENIRYLTG-----FTGSRGL--ALVVTADGATLLTDALRY 55
Query: 378 SNAVRMYLHIDSCTSPLCVRV-KEYEKVWNDLRNIGLYWNRIWLPSQIAYSAGVSKAITT 436
+ A L V + E + + L+ +GL R+ + + +
Sbjct: 56 TEAAE------ESVPDLEVIEYDDAEALADLLKELGLELKRLGFEGD-HLTVAEYERLKE 108
Query: 437 LFSPDKRYAAPSPIIE 452
PD S +IE
Sbjct: 109 AL-PDAELVDASGLIE 123
>gnl|CDD|238514 cd01066, APP_MetAP, A family including aminopeptidase P,
aminopeptidase M, and prolidase. Also known as
metallopeptidase family M24. This family of enzymes is
able to cleave amido-, imido- and amidino-containing
bonds. Members exibit relatively narrow substrate
specificity compared to other metallo-aminopeptidases,
suggesting they play roles in regulation of biological
processes rather than general protein degradation.
Length = 207
Score = 54.4 bits (131), Expect = 2e-08
Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 11/124 (8%)
Query: 17 TTDVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPL--WKLGR 74
D++RT +G P+ EQ E Y A+ P ++D AR L LG
Sbjct: 88 HADLTRTFVIGEPSDEQRELYEAVREAQEAALAALRPGVTAE-EVDAAAREVLEEHGLGP 146
Query: 75 DYPHGTGHGIGAFSSVHECTISFVQNNTDIYSSILTKVILLLSPEPGYYKEDEFGIRLED 134
++ H TGHGIG +HE + ++T +L + + + EPG Y G+R+ED
Sbjct: 147 NFGHRTGHGIGL--EIHEPPVLKAGDDT-----VLEPGM-VFAVEPGLYLPGGGGVRIED 198
Query: 135 IFEV 138
V
Sbjct: 199 TVLV 202
Score = 34.4 bits (79), Expect = 0.088
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Query: 468 AHIRDAVIFCD-AMAFVEDQYFRGEDITETSVAHILDSHRTENTISRGISFESIVAYGEH 526
A +R A + AMA + G +TE VA + + + +IV G
Sbjct: 2 ARLRKAAEIAEAAMAAAAEAIRPG--VTEAEVAAAI--EQALRAAGGYPAGPTIVGSGAR 57
Query: 527 AALPHYTPSNATNVVVRGDAPLLVDSGGHY 556
ALPHY P + ++ +LVD GG Y
Sbjct: 58 TALPHYRPDDRR---LQEGDLVLVDLGGVY 84
>gnl|CDD|182080 PRK09795, PRK09795, aminopeptidase; Provisional.
Length = 361
Score = 33.8 bits (77), Expect = 0.25
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 15/76 (19%)
Query: 73 GRDYPHGTGHGIGAFSSVHECTISFVQNNTDIYSSILTKVILLLSPEPGYYKEDEFGIRL 132
G + H TGH IG VHE ++ T + +LL+ EPG Y + G+R+
Sbjct: 283 GDYFGHNTGHAIGI--EVHEDPRFSPRDTTTLQPG------MLLTVEPGIYLPGQGGVRI 334
Query: 133 EDIF-------EVVYA 141
ED+ EV+YA
Sbjct: 335 EDVVLVTPQGAEVLYA 350
>gnl|CDD|238520 cd01087, Prolidase, Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro
dipeptidase, X-Pro dipeptidase, proline dipeptidase.,
imidodipeptidase, peptidase D, gamma-peptidase.
Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on
aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Length = 243
Score = 31.8 bits (73), Expect = 0.76
Identities = 20/75 (26%), Positives = 25/75 (33%), Gaps = 28/75 (37%)
Query: 76 YPHGTGHGIGAFSSVHECTISFVQNNTDIYSSILTKVILLLSP------EPGYY------ 123
+PHG GH +G VH+ L P EPG Y
Sbjct: 167 FPHGLGHYLGL--DVHDVGGYLRYLRRARP----------LEPGMVITIEPGIYFIPDLL 214
Query: 124 KEDEF----GIRLED 134
E+ GIR+ED
Sbjct: 215 DVPEYFRGGGIRIED 229
Score = 30.2 bits (69), Expect = 2.1
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 510 TISRG--ISFESIVAYGEHAALPHYTPSNATNVVVRGDAPLLVDSGGHY 556
SRG +++ IVA G +AA+ HY ++ + GD +L+D+G Y
Sbjct: 39 FRSRGARLAYSYIVAAGSNAAILHYVHNDQP--LKDGDL-VLIDAGAEY 84
>gnl|CDD|117125 pfam08548, Peptidase_M10_C, Peptidase M10 serralysin C terminal.
Serralysins are peptidases related to mammalian matrix
metallopeptidases (MMPs). The peptidase unit is found at
the N terminal while this domain at the C terminal forms
a corkscrew and is thought to be important for secretion
of the protein through the bacterial cell wall. This
domain contains the calcium ion binding domain
pfam00353.
Length = 220
Score = 28.9 bits (65), Expect = 6.4
Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 15/69 (21%)
Query: 134 DIFEVVYAAGTDEQYLAFKPVTAVPFEPKF--IDISLFGPEESEEVHPRDERLKFLSGFS 191
D F VY A +D A P F ID+S F L F+ F+
Sbjct: 127 DTF--VYGAASDSTPAA--PDWIRDFVSGEDKIDLSAFNKGAD---------LHFVDAFT 173
Query: 192 GSYGFAVVT 200
G G A++T
Sbjct: 174 GKAGEALLT 182
>gnl|CDD|217530 pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The
2-hydroxycarboxylate transporter family is a family of
secondary transporters found exclusively in the
bacterial kingdom. They function in the metabolism of
the di- and tricarboxylates malate and citrate, mostly
in fermentative pathways involving decarboxylation of
malate or oxaloacetate.
Length = 414
Score = 29.0 bits (66), Expect = 6.6
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 34 VEAYSRTLLGMIR--LATAVFPAHLHSNQLDILARAPLWKLGRDYPHGTGHG 83
E YS +LGM + + + PA N L I+ L KLG+ P TG+G
Sbjct: 173 SEIYS-EILGMSQEQYFSQLIPALTIGNILAIILAGLLNKLGKKKPSLTGNG 223
>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA).
DltA belongs to the class I AMP-forming adenylation
domain superfamily, which also includes acetyl-CoA
synthetase, luciferase, and the adenylation domains of
non-ribosomal synthetases. It catalyzes the two-step
activation reaction of D-alanine: the formation of a
substrate-AMP molecule as an intermediate, and then the
transfer of the amino acid adenylate to teichoic acid in
the biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram-positive bacteria.
Length = 447
Score = 28.7 bits (65), Expect = 8.8
Identities = 9/27 (33%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 318 ERVRRILRSVDCDALIVTALDEIAWLL 344
ER+ +IL + AL+ D++A++L
Sbjct: 78 ERIAKILEAAGPAALVADP-DDLAYIL 103
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.413
Gapped
Lambda K H
0.267 0.0664 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 29,595,710
Number of extensions: 2985696
Number of successful extensions: 2333
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2315
Number of HSP's successfully gapped: 26
Length of query: 559
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 457
Effective length of database: 6,413,494
Effective search space: 2930966758
Effective search space used: 2930966758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.8 bits)