RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6861
(559 letters)
>3ctz_A XAA-Pro aminopeptidase 1; PITA-bread fold, alternative splicing,
cytoplasm, hydrolase, manganese, metal-binding,
metalloprotease, protease; HET: P6G; 1.60A {Homo
sapiens}
Length = 623
Score = 418 bits (1077), Expect = e-140
Identities = 124/390 (31%), Positives = 199/390 (51%), Gaps = 14/390 (3%)
Query: 174 SEEVHPRDERLKFLSGFSGSYGFAVVTATKAALWVTGLDELQADLELSCDWLLMKSGHPG 233
SE + P D R F+SGF GS G A++T AA+W G LQA ++ +W LMK G
Sbjct: 40 SEYIAPCDCRRAFVSGFDGSAGTAIITEEHAAMWTDGRYFLQAAKQMDSNWTLMKMGLKD 99
Query: 234 VPTITEWLKDELGTGMRVGVDPKLIPNSQFEYLQRELNNATILLVQVVNNLIDQIWIKNR 293
PT +WL L G RVGVDP +IP ++ + + L +A L+ V NL+D+IW +R
Sbjct: 100 TPTQEDWLVSVLPEGSRVGVDPLIIPTDYWKKMAKVLRSAGHHLIPVKENLVDKIW-TDR 158
Query: 294 PLYSTHDAFIIQNEIAGESYQNKFERVRRILRSVDCDALIVTALDEIAWLLNIRAWDLPH 353
P + + G S+++K +R + + +VTALDEIAWL N+R D+ H
Sbjct: 159 PERPCKPLLTLGLDYTGISWKDKVADLRLKMAERNVMWFVVTALDEIAWLFNLRGSDVEH 218
Query: 354 SPFLRAYLAITESQVYLYTDEKKL-SNAVRMYLHID-SCTSPLCVRVKEYEKVWNDLRNI 411
+P +Y I + L+ D ++ + +V+ +L +D + ++V Y+ + ++L+ +
Sbjct: 219 NPVFFSYAIIGLETIMLFIDGDRIDAPSVKEHLLLDLGLEAEYRIQVHPYKSILSELKAL 278
Query: 412 GLYWN---RIWLPSQIAYSAGVSKAITTLFSPDKRYA-APSPIIEMKAQKNDVEIKGMHE 467
+ ++W+ + +Y A++ D R +PI KA KN E +GM
Sbjct: 279 CADLSPREKVWVSDKASY------AVSETIPKDHRCCMPYTPICIAKAVKNSAESEGMRR 332
Query: 468 AHIRDAVIFCDAMAFVEDQYFRGEDITETSVAHILDSHRTENTISRGISFESIVAYGEHA 527
AHI+DAV C+ ++E + +G +TE S A + R + +SF +I + G
Sbjct: 333 AHIKDAVALCELFNWLEKEVPKGG-VTEISAADKAEEFRRQQADFVDLSFPTISSTGPTG 391
Query: 528 ALPHYTPSNATNVVVRGDAPLLVDSGGHYM 557
A+ HY P TN + D L+DSG Y
Sbjct: 392 AIIHYAPVPETNRTLSLDEVYLIDSGAQYK 421
Score = 202 bits (516), Expect = 9e-58
Identities = 64/169 (37%), Positives = 93/169 (55%), Gaps = 19/169 (11%)
Query: 15 DGTTDVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLWKLGR 74
DGTTDV+RT+H +PT + E ++ L G I ++ AVFP + LD AR+ LW G
Sbjct: 422 DGTTDVTRTMHFETPTAYEKECFTYVLKGHIAVSAAVFPTGTKGHLLDSFARSALWDSGL 481
Query: 75 DYPHGTGHGIGAFSSVHE--CTISFVQNNTDIYSSILTKVIL----LLSPEPGYYKEDEF 128
DY HGTGHG+G+F +VHE C IS+ + L +++ EPGYY++ F
Sbjct: 482 DYLHGTGHGVGSFLNVHEGPCGISYKTFSD---------EPLEAGMIVTDEPGYYEDGAF 532
Query: 129 GIRLEDIFEVVYAA----GTDEQYLAFKPVTAVPFEPKFIDISLFGPEE 173
GIR+E++ VV + L +P+T VP + K ID+ +E
Sbjct: 533 GIRIENVVLVVPVKTKYNFNNRGSLTLEPLTLVPIQTKMIDVDSLTDKE 581
>1wy2_A XAA-Pro dipeptidase; structural genomics, prolidase, riken
structural genomics/PR initiative, RSGI, hydrolase;
1.70A {Pyrococcus horikoshii} PDB: 1pv9_A
Length = 351
Score = 89.2 bits (222), Expect = 2e-19
Identities = 43/250 (17%), Positives = 88/250 (35%), Gaps = 42/250 (16%)
Query: 313 YQNKFERVRRILRSVDCDALIVTALDEIAWLLNIRAWDLPHSPFLRAYLAITESQVYLYT 372
K +++ + DA+++ + ++ P + Y+ IT LY
Sbjct: 4 MNEKVKKIIEFMDKNSIDAVLIAKNPNVYYISGAS----PLA---GGYILITGESATLYV 56
Query: 373 DEKKLSNAVRMYLHIDSCTSPLCVRVKEYEKVWNDLRNIGLYWNRIWLPSQIAYSAGVS- 431
E + + S + V + + + + + + +
Sbjct: 57 PE--------LEYEMAKEESNIPVEK------FKKMDEF---YKALEGIKSLGIESSLPY 99
Query: 432 ---KAITTLFSPDKRYAAPSPIIE-MKAQKNDVEIKGMHEA-HIRDAVIFCDAMAFVEDQ 486
+ + K + +I M+ K++ EIK + +A I D A+ +
Sbjct: 100 GFIEELKKKA-NIKEFKKVDDVIRDMRIIKSEKEIKIIEKACEIADKA-VMAAIEEIT-- 155
Query: 487 YFRGEDITETSVAHILDSHRTENTISRGISFESIVAYGEHAALPHYTPSNATNVVVRGDA 546
E E VA ++ N +F++I+A G +ALPH S+ + RGD
Sbjct: 156 ----EGKKEREVAAKVEYLMKMNGAE-KPAFDTIIASGYRSALPHGVASD--KRIERGD- 207
Query: 547 PLLVDSGGHY 556
+++D G Y
Sbjct: 208 LVVIDLGALY 217
Score = 61.8 bits (151), Expect = 2e-10
Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 24/133 (18%)
Query: 12 ARIDG-TTDVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLW 70
A +D++RT+ +GSP +Q E Y +L + A + + +LD +AR +
Sbjct: 215 ALYQHYNSDITRTIVVGSPNEKQKEIY-EIVLEAQKKAVESAKPGITAKELDSIARNIIA 273
Query: 71 K--LGRDYPHGTGHGIGAFSSVHECTISFVQNNTDIYSSILTKVILLLSP------EPGY 122
+ G + H GHG+G VHE Q + + L EPG
Sbjct: 274 EYGYGEYFNHSLGHGVG--LEVHE-WPRVSQYDETV-----------LREGMVITIEPGI 319
Query: 123 YKEDEFGIRLEDI 135
Y G+R+ED
Sbjct: 320 YIPKIGGVRIEDT 332
Score = 38.3 bits (90), Expect = 0.005
Identities = 20/106 (18%), Positives = 41/106 (38%), Gaps = 13/106 (12%)
Query: 184 LKFLSGFSGSYG-FAVVTATKAALWVTGLDELQADLELSCDWLLMKSGHPGVPTITEWLK 242
+ ++SG S G + ++T A L+V L+ A E + K +
Sbjct: 31 VYYISGASPLAGGYILITGESATLYVPELEYEMAKEESNIPVEKFKK--------MDEFY 82
Query: 243 DELGTGMRVGVDPKLIPNSQFEYLQRELNNATILLVQVVNNLIDQI 288
L +G++ +P E L+++ N V+++I +
Sbjct: 83 KALEGIKSLGIE-SSLPYGFIEELKKKANIKEFKK---VDDVIRDM 124
>2zsg_A Aminopeptidase P, putative; hydrolase; 1.65A {Thermotoga maritima}
Length = 359
Score = 86.5 bits (215), Expect = 1e-18
Identities = 52/252 (20%), Positives = 104/252 (41%), Gaps = 40/252 (15%)
Query: 315 NKFERVRRILRSVDCDALIVTALDEIAWLLNIRAWDLPH-SPFLR--AYLAITESQVYLY 371
++ ER+ +++ DA ++ ++ N + S F + + I+E+ L
Sbjct: 2 DRSERLIQLISEEGIDAFLIMNIE------NSARASSVYFSGFTGSFSIILISENTRLLI 55
Query: 372 TDEKKLSNAVRMYLHIDSCTSPLCVRVKEYEKVWNDLRNIGLYWNRIWLPSQIAY----- 426
TD Y + VR + + L+ IA
Sbjct: 56 TDS--------RYTVQAKQETDFEVREVKGGDFIDVLKKTVNDLK----IKTIALEEERV 103
Query: 427 SAGVSKAITTLFSPDKRYAAPSPIIE-MKAQKNDVEIKGMHEA-HIRDAVIFCDAMAFVE 484
S + + I++ F D+++ ++ M+ K++ EI+ + +A I + F + + +
Sbjct: 104 SLSLFRRISSAF-GDRKFIGIDDEVKQMRMVKDEGEIEKIKQAIEISERA-FLETVQQIR 161
Query: 485 DQYFRGEDITETSVAHILDSHRTENTISRGISFESIVAYGEHAALPHYTPSNATNVVVRG 544
+TE +A +L+ + G++F++IVA G +ALPH S+ VV RG
Sbjct: 162 ------AGMTEKEIAALLEYTMRKEGAE-GVAFDTIVASGCRSALPHGKASD--KVVERG 212
Query: 545 DAPLLVDSGGHY 556
D +++D G Y
Sbjct: 213 D-VIVIDFGATY 223
Score = 59.2 bits (144), Expect = 1e-09
Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 24/133 (18%)
Query: 12 ARIDG-TTDVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLW 70
A + D++R + +G P+ E E + +L A + A + LD +AR +
Sbjct: 221 ATYENYCADITRVVSIGEPSDEVKEVH-SIVLEAQERALKIAKAGVTGKLLDSVAREFIR 279
Query: 71 K--LGRDYPHGTGHGIGAFSSVHECTISFVQNNTDIYSSILTKVILLLSP------EPGY 122
+ G + H GHGIG VHE + N L EPG
Sbjct: 280 EKGYGEFFGHSLGHGIG--LEVHE-GPAISFRNDSP-----------LPENVVFTVEPGI 325
Query: 123 YKEDEFGIRLEDI 135
Y E +FGIR+E+
Sbjct: 326 YLEGKFGIRIEED 338
Score = 50.3 bits (121), Expect = 8e-07
Identities = 15/109 (13%), Positives = 41/109 (37%), Gaps = 6/109 (5%)
Query: 180 RDERLKFLSGFSGSYGFAVVTATKAALWVTGLDELQADLELSCDWLLMKSGHPGVPTITE 239
+ SGF+GS+ +++ L +QA E + +K G + + +
Sbjct: 28 ARASSVYFSGFTGSFSIILISENTRLLITDSRYTVQAKQETDFEVREVKGGDF-IDVLKK 86
Query: 240 WLKDELGTGMRVGVDPKLIPNSQFEYLQRELNNATILLVQVVNNLIDQI 288
+ D + ++ + + S F + + + +++ + Q+
Sbjct: 87 TVNDLKIK--TIALEEERVSLSLFRRISSAFGDRKFIG---IDDEVKQM 130
>3q6d_A Proline dipeptidase; structural genomics, csgid, center for
structural genomics O infectious diseases,
aminopeptidase, viral protein; 1.97A {Bacillus
anthracis}
Length = 356
Score = 82.6 bits (205), Expect = 3e-17
Identities = 50/253 (19%), Positives = 93/253 (36%), Gaps = 44/253 (17%)
Query: 313 YQNKFERVRRILRSVDCDALIVTALDEIAWLLNIRAWDLPHSPFLRAYLAITESQVYLYT 372
K ER+R D +++T ++ N + + I++ + T
Sbjct: 3 AMEKIERLRSAFDEAGIDGILLTNEHSRRYMANFTG-----TA---GVVLISKKRAQFIT 54
Query: 373 DEKKLSNAVRMYLHIDSCTSPLCVRVKEYEKVWNDLRNIGLYWNRIWLPSQIAYSAGVSK 432
D Y+ S + V+ + +++ + G +
Sbjct: 55 DF--------RYVEQASKQAVGYEIVQHAGLIIDEVAKQ--------VKELGIQKLGFEQ 98
Query: 433 AITTLF-------SPDKRYAAPSPIIE-MKAQKNDVEIKGMHEA-HIRDAVIFCDAMAFV 483
T + D + S ++E ++ K D EIK + EA I DA F ++F+
Sbjct: 99 DTLTYSSYSAHKEAIDAEFIPTSGLVEKLRLIKTDSEIKILKEAAQIADAA-FEHILSFI 157
Query: 484 EDQYFRGEDITETSVAHILDSHRTENTISRGISFESIVAYGEHAALPHYTPSNATNVVVR 543
++E V++ L+ + + SF+ IVA G +ALPH S V+
Sbjct: 158 R------PGVSEIEVSNELEFFMRKQGAT-SSSFDIIVASGLRSALPHGVASE--KVIET 208
Query: 544 GDAPLLVDSGGHY 556
GD + +D G +Y
Sbjct: 209 GD-FVTLDFGAYY 220
Score = 59.1 bits (144), Expect = 1e-09
Identities = 35/133 (26%), Positives = 52/133 (39%), Gaps = 24/133 (18%)
Query: 12 ARIDG-TTDVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLW 70
A G +D++RT+ +G P+ + E Y +L A L + D L R +
Sbjct: 218 AYYKGYCSDITRTIAVGEPSDKLKEIY-NIVLEAQLRGVNGIKAGLTGREADALTRDYIT 276
Query: 71 K--LGRDYPHGTGHGIGAFSSVHECTISFVQNNTDIYSSILTKVILLLSP------EPGY 122
+ G + H TGHGIG +HE + + L P EPG
Sbjct: 277 EKGYGEYFGHSTGHGIG--LEIHE-APGLAFRSDTV-----------LEPGMAVTVEPGI 322
Query: 123 YKEDEFGIRLEDI 135
Y G+R+ED
Sbjct: 323 YIPGIGGVRIEDD 335
Score = 47.2 bits (113), Expect = 8e-06
Identities = 12/101 (11%), Positives = 41/101 (40%), Gaps = 3/101 (2%)
Query: 184 LKFLSGFSGSYGFAVVTATKAALWVTGLDELQADLELSCDWLLMKSGHPGVPTITEWLKD 243
++++ F+G+ G +++ +A QA + + +++ + + + +K+
Sbjct: 30 RRYMANFTGTAGVVLISKKRAQFITDFRYVEQASKQAV-GYEIVQHAGLIIDEVAKQVKE 88
Query: 244 ELGTGMRVGVDPKLIPNSQFEYLQRELNNATILLVQVVNNL 284
++G + + S + + ++ I +V L
Sbjct: 89 LGIQ--KLGFEQDTLTYSSYSAHKEAIDAEFIPTSGLVEKL 127
>1wn1_A Dipeptidase; prolidase, cobalt(II), structural genomics, riken
structural genomics/proteomics initiative, RSGI,
hydrolase; 2.25A {Pyrococcus horikoshii} PDB: 2how_A
Length = 356
Score = 80.7 bits (200), Expect = 1e-16
Identities = 53/253 (20%), Positives = 97/253 (38%), Gaps = 46/253 (18%)
Query: 316 KFERVRRILRSVDCDALIVTALDEIAWLLNIRAWDLPHSPFLR-AYLAITESQVYLYTD- 373
+ E+ +L D +++ + +L +R H R A LA++ Y +
Sbjct: 2 RLEKFIHLLGERGFDGALISPGTNLYYLTGLR----LHEVGERLAILAVSAEGDYRFLAP 57
Query: 374 --EKKLSNAVRMYLHIDSCTSPLCVRVKEYEKVWNDLRNIGLYWNRIWLPSQIAYSAGVS 431
+ + N D +P Y K+ L +G+ RI +
Sbjct: 58 SLYENVVNNFPATFWHDG-ENP-------YAKLREILEELGISKGRI----------LIE 99
Query: 432 KAITTLF------SPDKRYAAPSPIIE-MKAQKNDVEIKGMHEA-HIRDAVIFCDAMAFV 483
+ + + S +I+ ++ K+ E+K M A I D V F + + +
Sbjct: 100 DTMRADWLIGIMKLGKFTFQPLSSLIKELRMIKDKEEVKMMEHASRIADKV-FEEILTWD 158
Query: 484 EDQYFRGEDITETSVAHILDSHRTENTISRGISFESIVAYGEHAALPHYTPSNATNVVVR 543
+ E +A ++ E S GI+FE IVA GE+AA PH+ P + +
Sbjct: 159 L------IGMKERELALKIELLIREL--SDGIAFEPIVASGENAANPHHEPGE--RKIRK 208
Query: 544 GDAPLLVDSGGHY 556
GD +++D G +
Sbjct: 209 GD-IIILDYGARW 220
Score = 61.1 bits (149), Expect = 3e-10
Identities = 35/133 (26%), Positives = 50/133 (37%), Gaps = 24/133 (18%)
Query: 12 ARIDG-TTDVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLW 70
AR G +D++RT+ LG V+ Y + A + + +D AR +
Sbjct: 218 ARWKGYCSDITRTIGLGELDERLVKIY-EVVKDAQESAFKAVREGIKAKDVDSRAREVIS 276
Query: 71 K--LGRDYPHGTGHGIGAFSSVHECTISFVQNNTDIYSSILTKVILLLSP------EPGY 122
K G + H TGHG+G VHE + I L EPG
Sbjct: 277 KAGYGEYFIHRTGHGLG--LDVHE-EPYIGPDGEVI-----------LKNGMTFTIEPGI 322
Query: 123 YKEDEFGIRLEDI 135
Y G+R+ED
Sbjct: 323 YVPGLGGVRIEDD 335
>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida}
SCOP: c.55.2.1 d.127.1.1
Length = 401
Score = 77.7 bits (192), Expect = 1e-15
Identities = 37/252 (14%), Positives = 73/252 (28%), Gaps = 29/252 (11%)
Query: 313 YQNKFERVRRILRSVDCDALIVTALDEIAWLLNIRAWDLPHSPFLRAY-LAITESQVYLY 371
Y N+ R+R L + + DA I T+ I + + F R Y L +TE V
Sbjct: 23 YANRQARLRAHLAAENIDAAIFTSYHNINYYSDFLYC-----SFGRPYALVVTEDDVISI 77
Query: 372 TDEKKLSNAVRMYLHIDSCTSPLCVRVKEYEKVWNDLRNIGLYWNRIWLPSQIAYSAGVS 431
+ R + D+ + + + + ++ RI + +
Sbjct: 78 SANIDGGQPWRRTVGTDN----IVYTDWQRDNYFAAIQQALPKARRIGIEHD-HLNLQNR 132
Query: 432 KAITTLFSPDKRYAAPSPIIE-MKAQKNDVEIKGMHEA-HIRDAVIFCDAMAFVEDQYFR 489
+ + PD + M+ K+ E + I D + +
Sbjct: 133 DKLAARY-PDAELVDVAAACMRMRMIKSAEEHVMIRHGARIADIG-GAAVVEALG----- 185
Query: 490 GEDITETSVAHILDSHRTENTISR-----GISFESIVAYGEHAALPHYTPSNATNVVVRG 544
+ + E VA + + G + H + V +G
Sbjct: 186 -DQVPEYEVALHATQAMVRAIADTFEDVELMDTWTWFQSGINTDGAHNPVTT--RKVNKG 242
Query: 545 DAPLLVDSGGHY 556
D L ++
Sbjct: 243 D-ILSLNCFPMI 253
Score = 58.5 bits (142), Expect = 2e-09
Identities = 28/172 (16%), Positives = 50/172 (29%), Gaps = 39/172 (22%)
Query: 12 ARIDG-TTDVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLW 70
I G T + RTL L + + + + + + P + +
Sbjct: 251 PMIAGYYTALERTLFLDHCSDDHLRLWQVNVEVHEAGLKLIKPG-ARCSDIARELNEIFL 309
Query: 71 K--LGRDYPHGTGHGIGAFSSVHE----CTISFVQNNTDIYSSILTKVILLLSP------ 118
K + + G GH G + H + ++ + L P
Sbjct: 310 KHDVLQYRTFGYGHSFG--TLSHYYGREAGLELREDIDTV-----------LEPGMVVSM 356
Query: 119 EPGYYKEDE----FGIRLEDIFEVVYAAGTDEQYLAFKPVTAVPFEPKFIDI 166
EP + G R DI +V G + +T P+ P+ I
Sbjct: 357 EPMIMLPEGLPGAGGYREHDIL-IVNENG-------AENITKFPYGPEKNII 400
Score = 42.3 bits (100), Expect = 3e-04
Identities = 14/103 (13%), Positives = 29/103 (28%), Gaps = 6/103 (5%)
Query: 187 LSGF----SGSYGFAVVTATKAALWVTGLDELQADLELSCDWLLMKSGHPGVPTITEWLK 242
S F G VVT +D Q ++ + ++
Sbjct: 53 YSDFLYCSFGRPYALVVTEDDVISISANIDGGQPWRRTVGTDNIVYTDWQR-DNYFAAIQ 111
Query: 243 DELGTGMRVGVDPKLIPNSQFEYLQRELNNATILLV-QVVNNL 284
L R+G++ + + L +A ++ V +
Sbjct: 112 QALPKARRIGIEHDHLNLQNRDKLAARYPDAELVDVAAACMRM 154
>4ege_A Dipeptidase PEPE; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, hydrolase; 2.20A
{Mycobacterium ulcerans}
Length = 378
Score = 74.6 bits (184), Expect = 1e-14
Identities = 47/254 (18%), Positives = 87/254 (34%), Gaps = 29/254 (11%)
Query: 308 IAGESYQNKFERVRRILRSVDCDALIVTALDEIAWLLNIRAWDLPHSPFLR-AYLAITES 366
Y + L++T ++ +L+ RA F R L + S
Sbjct: 10 FDTAVYARRLAAAAAATEQAGLAGLVITPGYDLRYLIGSRA-----DTFERLTALVLPAS 64
Query: 367 QVYLYTDEKKLSNAVRMYLHIDSCTSPLCVRVKEYEKVWNDLRNIGLYWNRIWLPSQIAY 426
V + +++ +S S L V V+++ + + + + P+ A
Sbjct: 65 GVPTIVLPRLELASLK-----ESAASDLGVCVRDWVDGDDPYQLVAVALGG--APAATAV 117
Query: 427 SAGVSKAITTLFS---PDKRYAAPSPIIEMKAQKNDVEIKGMHEA-HIRDAVIFCDAMAF 482
+ + + A + +++ K E+ + +A D V AF
Sbjct: 118 TDSMPALHLLPLADALGVLPVLATDVLRQLRMVKEAAEVDALAKAGAAIDRV-HARVPAF 176
Query: 483 VEDQYFRGEDITETSVAHILDSHRTENTISRGISFESIVAYGEHAALPHYTPSNATNVVV 542
+ TE VA + S ++F IV G H A PH+ S+ +
Sbjct: 177 LV------PGRTEAQVAADIAEAIVAEGHS-AVAF-VIVGSGPHGADPHHGYSD--RKLQ 226
Query: 543 RGDAPLLVDSGGHY 556
GD ++VD GG Y
Sbjct: 227 VGD-IVVVDIGGTY 239
Score = 66.5 bits (163), Expect = 6e-12
Identities = 39/128 (30%), Positives = 50/128 (39%), Gaps = 23/128 (17%)
Query: 19 DVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLWK--LGRDY 76
D +RT +G P+ + + YS AV P + + Q+D AR L L +
Sbjct: 246 DSTRTYSIGDPSPDVAQQYSALQRAQRAAVDAVRPG-VTAAQVDAAARDVLADAGLAEYF 304
Query: 77 PHGTGHGIGAFSSVHECTISFVQNNTDIYSSILTKVILLLSP------EPGYYKEDEFGI 130
H TGHGIG VHE V N L EPG Y +G
Sbjct: 305 VHRTGHGIG--LCVHE-EPYIVAGNELP-----------LVAGMAFSIEPGIYFPGRWGA 350
Query: 131 RLEDIFEV 138
R+EDI V
Sbjct: 351 RIEDIVVV 358
>3qoc_A Putative metallopeptidase; MCSG, PSI-2, structural genomics,
midwest center for structu genomics, hydrolase; HET:
MSE; 2.15A {Corynebacterium diphtheriae}
Length = 135
Score = 65.9 bits (161), Expect = 3e-13
Identities = 22/111 (19%), Positives = 44/111 (39%), Gaps = 9/111 (8%)
Query: 179 PRDERLKFLSGFSGSYGFAVVTATKAA-LWVTGLDELQADLELSCDWLLMKSGHPGVPTI 237
+++LSGF+GS ++ +A + G Q ++ LM
Sbjct: 32 THLTHIRYLSGFTGSNAALIINKDLSARISTDGRYITQIAEQVPDIESLMARNCA----- 86
Query: 238 TEWLKDELGTGMRVGVDPKLIPNSQFEYLQRELNNATILLVQVVNNLIDQI 288
L ++ RVG + + SQ E L++ + + L+ V I+++
Sbjct: 87 -PALLSDINGPKRVGFEADYLSVSQCEELRKSA-GSDVELIP-VTGAIEKL 134
Score = 32.0 bits (73), Expect = 0.17
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 313 YQNKFERVRRILRSVDCDALIVTALDEIAWL 343
+ + + L + DA++VT L I +L
Sbjct: 10 FLQRRRALSAQLAAKRIDAMLVTHLTHIRYL 40
>1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich;
2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1
Length = 402
Score = 69.3 bits (170), Expect = 8e-13
Identities = 32/252 (12%), Positives = 74/252 (29%), Gaps = 30/252 (11%)
Query: 313 YQNKFERVRRILRSVDCDALIVTALDEIAWLLNIRAWDLPHSPFLRAY-LAITESQVYLY 371
+ +R+R + B DA++ T+ I + F R Y I Z +
Sbjct: 24 MTRRZBRLRAWMAKSBIDAVLFTSYHNINYYSGWLY-----CYFGRKYAZVIBZVKAVTI 78
Query: 372 TDEKKLSNAVRMYLHIDSCTSPLCVRVKEYEKVWNDLRNIGLYWNRIWLPSQIAYSAGVS 431
+ R S + + + ++ ++ + I + +
Sbjct: 79 SKGIDGGMPWR-----RSFGBNIVYTDWKRDNFYSAVKKLVKGAKZIGIEHD-HVTLBHR 132
Query: 432 KAITTLFSPDKRYAAPSPIIEMKAQKNDVEIKGMHEA-HIRDAVIFCDAMAFVEDQYFRG 490
+ + + P++ + K+ E + Z I D A +
Sbjct: 133 RZLZKALPGTEFVDVGZPVMWZRVIKSSEEZBLIRZGARISDIG-GAATAAAIS------ 185
Query: 491 EDITETSVAHILDSHRTENTISRGISFESIV------AYGEHAALPHYTPSNATNVVVRG 544
+ E VA I+R + ++ G + H +B VV RG
Sbjct: 186 AGVPEYEVAIATTBAMVRZ-IARBFPYVELMDTWIWFQSGINTDGAHNPVTB--RVVZRG 242
Query: 545 DAPLLVDSGGHY 556
D L ++
Sbjct: 243 D-ILSLNCFPMI 253
Score = 58.5 bits (142), Expect = 2e-09
Identities = 30/172 (17%), Positives = 47/172 (27%), Gaps = 39/172 (22%)
Query: 12 ARIDG-TTDVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLW 70
I G T + RTL L +Z + + R + P +
Sbjct: 251 PMIFGYYTALERTLFLZZVBDASLZIWZKNTAVHRRGLZLIKPG-ARCKDIASELNBMYR 309
Query: 71 K--LGRDYPHGTGHGIGAFSSVHE----CTISFVQNNTDIYSSILTKVILLLSP------ 118
+ L R G GH G H + ++ + L P
Sbjct: 310 ZWDLLRYRTFGYGHSFGV--LBHYYGREAGVELREDIZTV-----------LEPGMVVSM 356
Query: 119 EPGYYKEDE----FGIRLEDIFEVVYAAGTDEQYLAFKPVTAVPFEPKFIDI 166
EP + G R DI V+ + +T PF P+ I
Sbjct: 357 EPMVMBPEGEPGAGGYREHDIL-VIKENB-------TENITGFPFGPEHNII 400
Score = 40.4 bits (95), Expect = 0.001
Identities = 13/100 (13%), Positives = 30/100 (30%), Gaps = 3/100 (3%)
Query: 186 FLSGFSGSYGFAVVTATKAALWVTGLDELQADLELSCDWLLMKSGHPGVPTITEWLKDEL 245
+L + G V+ KA G+D B ++ +K +
Sbjct: 57 WLYCYFGRKYAZVIBZVKAVTISKGIDGGMPWRRSFGBNIVYTDWKR--DNFYSAVKKLV 114
Query: 246 GTGMRVGVDPKLIPNSQFEYLQRELNNATILLV-QVVNNL 284
+G++ + LZ+ L + V Z V
Sbjct: 115 KGAKZIGIEHDHVTLBHRRZLZKALPGTEFVDVGZPVMWZ 154
>3ovk_A Aminopeptidase P, XAA-Pro dipeptidase; structural genomics, PSI-2,
protein structure initiative, MI center for structural
genomics, MCSG; 2.00A {Streptococcus pyogenes}
Length = 132
Score = 62.0 bits (151), Expect = 7e-12
Identities = 19/110 (17%), Positives = 45/110 (40%), Gaps = 8/110 (7%)
Query: 179 PRDERLKFLSGFSGSYGFAVVTATKAALWVTGLDELQADLELSCDWLLMKSGHPGVPTIT 238
+L+GFSG+ ++TA + L L A + ++ + +
Sbjct: 30 THLTNSYYLTGFSGTAATVLITAKRRVLITDSRYTLLAKASVEGFDIIESRTP--LKVVA 87
Query: 239 EWLKDELGTGMRVGVDPKLIPNSQFEYLQRELNNATILLVQVVNNLIDQI 288
E L+ + +G + + + S ++ +Q EL+ T L+ + ++ +
Sbjct: 88 ELLEADQID--CLGFEDQ-VSFSFYQAMQAELSGIT--LLA-QSGFVEHL 131
Score = 34.6 bits (80), Expect = 0.025
Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 8/61 (13%)
Query: 313 YQNKFERVRRILRSVDCDALIVTALDEIAWLLNIRAWDLPHSPFLRAYLAITESQVYLYT 372
+ + R + +AL+VT L +L A + IT + L T
Sbjct: 8 LEQRLGHCLRQMAEKGLEALLVTHLTNSYYLTGFSGTA--------ATVLITAKRRVLIT 59
Query: 373 D 373
D
Sbjct: 60 D 60
>3il0_A Aminopeptidase P; XAA-Pro aminopeptidase; structural genomics MCSG,
protein structure initiative, midwest center for STRU
genomics; HET: GOL; 2.20A {Streptococcus thermophilus}
Length = 131
Score = 58.1 bits (141), Expect = 1e-10
Identities = 13/108 (12%), Positives = 39/108 (36%), Gaps = 8/108 (7%)
Query: 181 DERLKFLSGFSGSYGFAVVTATKAALWVTGLDELQADLELSCDWLLMKSGHPGVPTITEW 240
+ +L+ F G+ +T + L A + ++ + I ++
Sbjct: 28 QNNIYYLTDFWGTNATVFITKNRRLFLTDSRYTLIAKQSVHGFDIIESKDP--LKDIVKF 85
Query: 241 LKDELGTGMRVGVDPKLIPNSQFEYLQRELNNATILLVQVVNNLIDQI 288
++ + +G D ++ + ++ LQ T+ N ++++
Sbjct: 86 VEVDKLE--TIGFDNQV-SFAYYQALQAIFEGYTLSP---QTNFMEEL 127
Score = 38.1 bits (89), Expect = 0.001
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 311 ESYQNKFERVRRILRSVDCDALIVTALDEIAWLLNIRAWDLPHSPFLRAYLAITESQVYL 370
+ Q + ER L DAL+VT + I +L + + A + IT+++
Sbjct: 2 NAMQRRLERFDAKLVQSGLDALLVTGQNNIYYLTDFWGTN--------ATVFITKNRRLF 53
Query: 371 YTD 373
TD
Sbjct: 54 LTD 56
>3biq_A FACT complex subunit SPT16; PITA-bread, aminopeptidase, chromatin,
replication, AC chromosomal protein, DNA damage, DNA
repair; 1.73A {Saccharomyces cerevisiae} PDB: 3bip_A
3bit_A*
Length = 467
Score = 62.3 bits (151), Expect = 2e-10
Identities = 21/177 (11%), Positives = 52/177 (29%), Gaps = 28/177 (15%)
Query: 19 DVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLWK----LGR 74
+++RT + P+ E Y L + T + ++ + K L
Sbjct: 302 NITRTFLID-PSEEMANNYDFLLTLQKEIVTNILKPGRTPKEVYESVIEYIEKTKPELVP 360
Query: 75 DYPHGTGHGIGAFSSVHECTISFVQNNTDIYSSILTK--VILLLSPEPGYY------KED 126
++ G IG + N + + + G+ +
Sbjct: 361 NFTKNIGSLIGL--EFRDSNFILNVKNDYR---KIQRGDCF---NISFGFNNLKDSQSAN 412
Query: 127 EFGIRLEDIFEVVYAAGTDEQYLAFKPVTAVPFEPKFIDISLFGPEESEEVHPRDER 183
+ ++L D ++ ++ + +T IS + E E+ + +
Sbjct: 413 NYALQLADTVQI-----PLDETEPPRFLTNYTKAKS--QISFYFNNEEEDNNKKKSS 462
Score = 40.0 bits (93), Expect = 0.002
Identities = 29/302 (9%), Positives = 88/302 (29%), Gaps = 64/302 (21%)
Query: 307 EIAGESYQNKFERVRRILR----SVDCDALIVTALDEIA----------WLLNIRAWDLP 352
I + ++ + E + S + ++ + + WLL+ ++ P
Sbjct: 7 NIDFDVFKKRIELLYSKYNEFEGSPNSLLFVLGSSNAENPYQKTTILHNWLLS---YEFP 63
Query: 353 HSPFLRAYLAITESQVYLYTDEKKLSNAVRMYLHIDSCTSPLCVRVKE--------YEKV 404
+ +A+ +V + T K + + S + + + + +K+
Sbjct: 64 AT-----LIALVPGKVIIITSSAKAKHLQKAIDLFKDPESKITLELWQRNNKEPELNKKL 118
Query: 405 WNDLRN-IGLYWNRIWLPSQIAYSAGVSKAITTLFSPDKRYA------APSPIIEMKAQK 457
++D+ I + +P + +Y ++ + + ++ K
Sbjct: 119 FDDVIALINSAGKTVGIPEKDSYQGKFMTEWNPVWEAAVKENEFNVIDISLGLSKVWEVK 178
Query: 458 NDVEIKGMHEA-HIRDAVIFCDAMAFVEDQYFRGEDITETSVAHILDSHRTENTISRGI- 515
+ E + + D + IT ++ +++ + + +
Sbjct: 179 DVNEQAFLSVSSKGSDKF-MDLLSNEMVRAVDEELKITNAKLSDKIENKIDDVKFLKQLS 237
Query: 516 --------------------SFESIVAYGEHAAL-PHYTPSNATNVVVRGDAPLLVDSGG 554
++ I+ G+ L +N + + +L G
Sbjct: 238 PDLSALCPPNYKFNFDLLDWTYSPIIQSGKKFDLRVSARSTN--DQLYGNG-CILASCGI 294
Query: 555 HY 556
Y
Sbjct: 295 RY 296
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 61.8 bits (149), Expect = 4e-10
Identities = 60/451 (13%), Positives = 121/451 (26%), Gaps = 122/451 (27%)
Query: 113 ILLLSPEPGYYK------EDEFGIRLEDI-FEVVYAAGTDEQYLAFKPV---TAVPFEPK 162
LL E K + + I E + Y+ + F
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129
Query: 163 FIDISLFGPEESEEVHP-----RDERLKFLSGFSGSYGFAVVTATKAA------------ 205
+ + ++ R + + G GS G V
Sbjct: 130 NVSR----LQPYLKLRQALLELRPAKNVLIDGVLGS-GKTWVALDVCLSYKVQCKMDFKI 184
Query: 206 LWVT-G--------LDELQA-DLELSCDWLLMKSGHPGVPTITEWLKDELGTGMRVGVDP 255
W+ L+ LQ ++ +W + ++ EL ++
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK----- 239
Query: 256 KLIPNSQFEYLQRELNNATILLVQVVNNLIDQIWIKN---------RPLYSTHDAFIIQN 306
+ N LLV + + + L +T +
Sbjct: 240 -----------SKPYENC--LLV------LLNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280
Query: 307 EIAGESYQNKFERVRRILRSVDCDALIVTALDEIAWLLNIRAWDLPH-----SPFLRAYL 361
A + + L + +L+ + + L+ R DLP +P + +
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLL------LKY-LDCRPQDLPREVLTTNPRRLSII 333
Query: 362 A------ITESQVYLYTDEKKLSNAVRMYLHIDSCTSPLCVRVKEYEKVWNDLR------ 409
A + + + + KL+ + L + P EY K+++ L
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSL---NVLEP-----AEYRKMFDRLSVFPPSA 385
Query: 410 NI-----GLYWNRI--WLPSQIAYSAGVSKAITTLFSPDKRYAAPSPIIEMKAQKNDVEI 462
+I L W + + ++ + + PS +E+K + +
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKL-HKYSLVEKQPKESTISIPSIYLELKVKLEN--E 442
Query: 463 KGMHE---AHIRDAVIFC--DAMAFVEDQYF 488
+H H F D + DQYF
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
>4b28_A Metallopeptidase, family M24, putative; lyase,
imethylsulfonioproionate, acrylate, dimethylsulfide;
2.15A {Roseobacter denitrificans och 114}
Length = 470
Score = 61.2 bits (148), Expect = 4e-10
Identities = 31/253 (12%), Positives = 68/253 (26%), Gaps = 17/253 (6%)
Query: 313 YQNKFERVRRILRSVDCDALIVTALDEIAWLLNIRAWDL--PHSPFLRAYLAITESQVYL 370
+ + R+ + + L++ I + + L H+PF + +
Sbjct: 79 RRFRHRRLTDHVVARGYAGLLMFDPLNIRYATDSTNMQLWNTHNPFR--ATLLCADGYMV 136
Query: 371 YTDEKKLSNAVRMYLHIDSCTSPLCV----RVKEYEKVWNDLRN--IGLYWNRIWLPSQI 424
D K + + + R + + + N L + ++
Sbjct: 137 MWDYKNSPFLSEFNPLVREQRAGADLFYFDRGDKVDVAADVFANEVRILLRDHAPGLRRL 196
Query: 425 AYSAGVSKAITTLFSPDKRYAAPSPIIE-MKAQKNDVEIKGMHEAHIRDAVIFCDAMAFV 483
A + + L + + E ++ K EI+ M A V F
Sbjct: 197 AVDKVMLHGLRALQAQGFEIMDGEEVTEKARSVKGPDEIRAMRCASHACEVAVRKMEDFA 256
Query: 484 EDQYFRGEDITETSVAHILDSHRTENTISRGISFESIVAYGEHAALPHYTPSNATNVVVR 543
+ G E + IL S ++A G + V +
Sbjct: 257 RSKVGDG-VTCENDIWAILHSENVRR--GGEWIETRLLASGPRSNPWFQECG---PRVCQ 310
Query: 544 GDAPLLVDSGGHY 556
+ + D+
Sbjct: 311 RNEIISFDTDLVG 323
Score = 51.1 bits (122), Expect = 5e-07
Identities = 27/150 (18%), Positives = 54/150 (36%), Gaps = 14/150 (9%)
Query: 18 TDVSRTLHLGSPTREQVEAYS-RTLLGMIRLATAVFPAHLHSNQLDILARAPLWKLGRDY 76
TD+SR+ +G Y+ + + IR + + +L K +
Sbjct: 329 TDISRSWWIGDQKPRADMIYAMQHGVEHIRTNMEMLKPGVMIPELSANTHVLDAKFQKQK 388
Query: 77 PHGTGHGIGAFSSVHEC-TISFVQNNTDIYSSILTKVILLLSPEPGYYKED-EFGIRLED 134
HG+G E +++ + + + L E +E +F I+LED
Sbjct: 389 YGCLMHGVG---LCDEWPLVAYPDHAVAGAYDYPLEPGMTLCVEALISEEGGDFSIKLED 445
Query: 135 IFEVVYAAGTDEQYLAFKPVTAVPFEPKFI 164
++ G ++ +T PF+P +
Sbjct: 446 QV-LITEDG-------YENLTKYPFDPALM 467
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.8 bits (139), Expect = 9e-09
Identities = 54/293 (18%), Positives = 93/293 (31%), Gaps = 118/293 (40%)
Query: 123 YKEDEFGIRLEDIFE------VVYAAGTD-----EQYLAFKPVTAVPFEPKFIDISLFGP 171
+ +D +G + DI ++ G E Y A FE +D G
Sbjct: 1652 HFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMI------FE-TIVD----GK 1700
Query: 172 EESEEVHPR-DERLKFLSGFSGSYGF---------AVVTATKAALWVTGLDELQADLELS 221
++E++ +E + F G A+ KAA DL+
Sbjct: 1701 LKTEKIFKEINEHSTSYT-FRSEKGLLSATQFTQPALTLMEKAAF---------EDLK-- 1748
Query: 222 CDWLLMKS-----GHP-----------GVPTITEWLK---------------DELGT--- 247
L+ + GH V +I ++ DELG
Sbjct: 1749 -SKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNY 1807
Query: 248 GMRVGVDPKLIPNS----QFEYLQRELNNATILLVQVVN-NLIDQIWIKNRPLYSTHDAF 302
GM + ++P + S +Y+ + T LV++VN N+ +Q ++
Sbjct: 1808 GM-IAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYV------------ 1854
Query: 303 IIQNEIAGESYQNKFERVRRILRSVDCDALIVTALDEIAWLLNIRAWDLPHSP 355
AG+ LR++D + L+ I L I +L S
Sbjct: 1855 -----AAGD------------LRALDT---VTNVLNFIK-LQKIDIIELQKSL 1886
Score = 52.4 bits (125), Expect = 3e-07
Identities = 91/601 (15%), Positives = 165/601 (27%), Gaps = 229/601 (38%)
Query: 34 VEAYS-RTLL---GMIRLATAVFPA--HLHSNQL-----DILARAPLWKLGRDYPHGTGH 82
++AYS R L G + V P ++QL IL P D
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLV-PTASFFIASQLQEQFNKILP-EPTEGFAADDE----- 53
Query: 83 GIGAFSSVHECTISFV--------QNNTDIYSSILTKVILLLSPEPGYYKEDEFGIRLED 134
++ E F+ + + +L + + E+ + + D
Sbjct: 54 ----PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCL-------TEF-ENCY-LEGND 100
Query: 135 IFEVVYAAGTDEQ------------YLAFKPVTAVPFEPKFIDISLFGPEESEEVHPRDE 182
I + + Y+ + + PF K + +LF +
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPF-DKKSNSALFR-------AVGEG 152
Query: 183 RLKFLSGFSG-----SYGFAVVTATKAALWVTGLDELQ----------ADL--------- 218
+ ++ F G Y +EL+ DL
Sbjct: 153 NAQLVAIFGGQGNTDDY----------------FEELRDLYQTYHVLVGDLIKFSAETLS 196
Query: 219 ELSCDWLLMKSGHPGVPTITEWLKDELGTGMRVGVDPKLIPNSQFEYLQRELNNAT---- 274
EL L + I EWL++ P P+ + L +
Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWLEN-----------PSNTPDKDY------LLSIPISCP 239
Query: 275 -ILLVQVVNNLIDQIWIKNRP--LY------STHD-----AFIIQNEIAGESYQNKFERV 320
I ++Q+ + ++ + P L + H A I + ES+ +
Sbjct: 240 LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA 299
Query: 321 RRIL-----RSVDC---DALIVTALDEI--------AWLLNIRAWDLPHSPFLRAYLAIT 364
+L R + +L + L++ + +L+I +L ++ Y+ T
Sbjct: 300 ITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS--NLTQE-QVQDYVNKT 356
Query: 365 ------ESQVYLYTDEKKLSNAVRMYLHIDSCTSP------LCVRVKEYEKVWNDLRNI- 411
QV + L N + + + P L + LR
Sbjct: 357 NSHLPAGKQVEIS-----LVNGAKNLV----VSGPPQSLYGLNLT----------LRKAK 397
Query: 412 ---GLYWNRI------------WLPSQIAYSAGVSKAITTLF-SPDKRYAAPS-PIIEMK 454
GL +RI +LP + + F S P+ +I
Sbjct: 398 APSGLDQSRIPFSERKLKFSNRFLP------------VASPFHSH---LLVPASDLINKD 442
Query: 455 AQKNDVEIKG--MHEA--HIRDAVIFCDAMAFVE----DQYFRG----EDITETSVAHIL 502
KN+V + D + D R E T+ HIL
Sbjct: 443 LVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHIL 502
Query: 503 D 503
D
Sbjct: 503 D 503
Score = 47.0 bits (111), Expect = 2e-05
Identities = 58/326 (17%), Positives = 94/326 (28%), Gaps = 113/326 (34%)
Query: 23 TLHLGSPTREQVEAYSRTLLGMIR-LATAVFPAH------LHSNQLDILARAPLWKLG-- 73
T L T ++ +Y + G + L TAV A + + + +G
Sbjct: 252 TAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI-TVLFF-IGVR 309
Query: 74 --RDYPHGT----------GHGIGAFS---SVHECTISFVQNNTDIYSSIL--TKVI--- 113
YP+ + + G S S+ T VQ+ + +S L K +
Sbjct: 310 CYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS 369
Query: 114 LLLSPEPGYYKEDEF---G-----IRLEDIFEVVYAAGTDEQ------------YLAFKP 153
L+ G L A +Q F P
Sbjct: 370 LVNGA-------KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP 422
Query: 154 VTAVPF-----EPKFIDISLFGPEESEEVHPRDERLKFLSGFSGSYGFAVVTATKAALWV 208
V + PF P I+ + + + +D ++ V T
Sbjct: 423 VAS-PFHSHLLVPASDLINKDLVKNNVSFNAKD--IQI-----------PVYDTF----- 463
Query: 209 TGLD--ELQADL---------ELSCDW---LLMKSGH-----PG----VPTITEWLKDEL 245
G D L + L W K+ H PG + +T KD
Sbjct: 464 DGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKD-- 521
Query: 246 GTGMRV---G-VDPKLIPNSQFEYLQ 267
GTG+RV G +D P+ + + Q
Sbjct: 522 GTGVRVIVAGTLDIN--PDDDYGFKQ 545
Score = 28.9 bits (64), Expect = 5.6
Identities = 54/315 (17%), Positives = 96/315 (30%), Gaps = 103/315 (32%)
Query: 248 GMRVGVDPKLIPNSQFEYLQREL-NNATILLVQVVNNLIDQIWIKNRPLYST-HDAFIIQ 305
GM G+D L S+ +++ N A I I + N P+ T H F
Sbjct: 1630 GM--GMD--LYKTSK---AAQDVWNRADNHFKDTYGFSILDI-VINNPVNLTIH--F--- 1676
Query: 306 NEIAGESYQNKFERVRRILRSVDCDALIVT--ALDEIAWLLNIRAWDLPHSPFLRAYLAI 363
GE + E ++ D + T EI + + L+
Sbjct: 1677 ---GGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE-----KGLLSA 1728
Query: 364 TE-SQVYLYTDEKKLSNAVRMYLHIDSCTSPLCVRVKEYEKVWNDLRNIGLYWNRIWLPS 422
T+ +Q L + A + DL++ GL I +
Sbjct: 1729 TQFTQPALTL----MEKAA-----------------------FEDLKSKGL----IPADA 1757
Query: 423 QIA------YSAGVSKAITTLFSPDKRYAAPSPIIEMKAQKNDVEIKG--MHEAHIRDAV 474
A Y+A S A + S + + +E+ V +G M A RD +
Sbjct: 1758 TFAGHSLGEYAALASLA--DVMSIE---SL----VEV------VFYRGMTMQVAVPRDEL 1802
Query: 475 IFCD-AMAFVEDQYFRGEDITETSVAHILDSHRTENTISRGISFE-SIVAYGEHAALPHY 532
+ M + ++ ++ ++++ + + + IV Y
Sbjct: 1803 GRSNYGMIAINPGRV-AASFSQEALQYVVER------VGKRTGWLVEIVNY--------- 1846
Query: 533 TPSNATN--VVVRGD 545
N N V GD
Sbjct: 1847 ---NVENQQYVAAGD 1858
>3cb6_A FACT complex subunit SPT16; peptidase homology domain, histone
binding module, histone H chaperone, PITA-bread fold;
1.84A {Schizosaccharomyces pombe} PDB: 3cb5_A
Length = 444
Score = 54.2 bits (130), Expect = 6e-08
Identities = 27/159 (16%), Positives = 46/159 (28%), Gaps = 21/159 (13%)
Query: 19 DVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILAR----APLWKLGR 74
+V RT P EQ + YS + +L + A L
Sbjct: 295 NVGRTYLFD-PDSEQQKNYSFLVALQKKLFEYCRDG-AVIGDIYTKILGLIRAKRPDLEP 352
Query: 75 DYPHGTGHGIGAFSSVHECTISFVQNNTDIYS-----SILTKVILLLSPEPGYYKEDEFG 129
++ G GIG E ++ N + ++ L++P P + E+
Sbjct: 353 NFVRNLGAGIGI--EFRESSLLVNAKNPRVLQAGMTLNLSIGFGNLINPHPKNSQSKEYA 410
Query: 130 IRLEDIFEVVYAAGTDEQYLAFKPVTAVPFEPKFIDISL 168
+ L D ++ T T P I
Sbjct: 411 LLLIDTIQI-----TRS---DPIVFTDSPKAQGDISYFF 441
Score = 53.8 bits (129), Expect = 9e-08
Identities = 19/126 (15%), Positives = 42/126 (33%), Gaps = 18/126 (14%)
Query: 446 APSPIIEMKAQKNDVEIKGMHEA-HIRDAVIFCDAMAFVEDQYFRGEDITETSVAHILDS 504
A + + A K++ E+ + A + AV+ + + +G+ IT + + ++S
Sbjct: 167 ASLGLAKCLAIKDEQELANIKGASRVSVAVMSKYFVDELSTYIDQGKKITHSKFSDQMES 226
Query: 505 HRTENTI--------------SRGISFESIVAYGEHAALPHYTPSNATNVVVRGDAPLLV 550
+ I+ G L ++ + + GD +L
Sbjct: 227 LIDNEAFFQTKSLKLGDIDLDQLEWCYTPIIQSGGSYDLKPSAITD--DRNLHGD-VVLC 283
Query: 551 DSGGHY 556
G Y
Sbjct: 284 SLGFRY 289
>3ig4_A XAA-Pro aminopeptidase; csgid, hydrolase, struct genomics, center
for structural genomics of infectious DISE; HET: SO4;
2.89A {Bacillus anthracis}
Length = 427
Score = 49.5 bits (119), Expect = 2e-06
Identities = 25/123 (20%), Positives = 46/123 (37%), Gaps = 19/123 (15%)
Query: 439 SPDKRYAAPSPII-EMKAQKNDVEIKGMHEAHIRDAVI----FCDAMAFVEDQYFRGEDI 493
P P I E++ K D EI+ + EA + + + + E
Sbjct: 153 YPHVTIGNVYPNICELRVFKTDEEIEIIKEA----IAVTKDGIYNVLKHA--KADMMEYE 206
Query: 494 TETSVAHILDSHRTENTISRGISFESIVAYGEHAALPHYTPSNATNVVVRGDAPLLVDSG 553
E L S + +F +I+A G++A + HY ++A ++ +L+D G
Sbjct: 207 LEAQFDFTLKSSG-----IKHHAFNTILASGKNATVLHYEDNDA---QIQNGDLVLLDLG 258
Query: 554 GHY 556
Sbjct: 259 AQK 261
Score = 35.3 bits (82), Expect = 0.048
Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 24/66 (36%)
Query: 76 YPHGTGHGIGAFSSVHECTISFVQNNTDIYSSILTKVILLLSP------EPG-YYKEDEF 128
Y HG H +G H+ Y +L EPG Y +E+
Sbjct: 337 YYHGVSHFLG--LDTHDVG---------TYKDR------VLEEGMVITIEPGLYIEEESI 379
Query: 129 GIRLED 134
GIR+ED
Sbjct: 380 GIRIED 385
>2v3z_A XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proline- specific
enzyme, aminopeptidas manganese enzyme, protease,
manganese; HET: CSO; 1.56A {Escherichia coli} SCOP:
c.55.2.1 d.127.1.1 PDB: 2bwy_A* 1wl9_A 1m35_A 1n51_A*
1w2m_A 1a16_A 1wbq_A 1wl6_A* 1w7v_A 1wlr_A* 2bh3_A*
2bha_A* 2bhb_A* 2bhc_A* 2bhd_A* 2bn7_A* 1jaw_A 2bwt_A*
2bwu_A* 2bww_A* ...
Length = 440
Score = 46.8 bits (112), Expect = 1e-05
Identities = 29/133 (21%), Positives = 51/133 (38%), Gaps = 11/133 (8%)
Query: 425 AYSAGVSKAITTLFSPDKRYAAPSPII-EMKAQKNDVEIKGMHEAHIRDAVIFCDAMAFV 483
+ + K + P++ EM+ K+ EI + A A+ AM
Sbjct: 143 SALEKLRKGSRQNLTAPATMIDWRPVVHEMRLFKSPEEIAVLRRAGEITAMAHTRAMEKC 202
Query: 484 EDQYFRGEDITETSVAHILDSHRTENTISRGISFESIVAYGEHAALPHYTPSNATNVVVR 543
+ E E + H + H +R S+ +IV GE+ + HYT + +R
Sbjct: 203 --RPGMFEYHLEGEIHHEFNRHG-----ARYPSYNTIVGSGENGCILHYTENEC---EMR 252
Query: 544 GDAPLLVDSGGHY 556
+L+D+G Y
Sbjct: 253 DGDLVLIDAGCEY 265
>2iw2_A XAA-Pro dipeptidase; metallocarboxypeptidase, disease mutation,
XAA-Pro dipeptida dipeptidase, peptidase D, collagen
degradation; 1.82A {Homo sapiens} PDB: 2okn_A
Length = 494
Score = 46.3 bits (110), Expect = 2e-05
Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 21/115 (18%)
Query: 450 IIEMKAQKNDVEIKGM-------HEAHIRDAVIFCDAMAFVEDQYFRGEDITETSVAHIL 502
I+E + K D+E++ + EAH M V+ + E + +
Sbjct: 181 IVECRVFKTDMELEVLRYTNKISSEAHRE-------VMKAVK------VGMKEYELESLF 227
Query: 503 DSHRTENTISRGISFESIVAYGEHAALPHYTPSNATN-VVVRGDAPLLVDSGGHY 556
+ + R S+ I GE++A+ HY + A N ++ L D GG Y
Sbjct: 228 EHYCYSRGGMRHSSYTCICGSGENSAVLHYGHAGAPNDRTIQNGDMCLFDMGGEY 282
>3rva_A Organophosphorus acid anhydrolase; PITA-bread fold, binuclea
center, BI-functional, prolidase, nerve agents, XAA-Pro
DIP hydrolase; 1.80A {Alteromonas macleodii}
Length = 451
Score = 42.7 bits (101), Expect = 2e-04
Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 10/108 (9%)
Query: 450 IIEMKAQKNDVEIKGMHEAHIRDAVIFCDAMAFVEDQYFRGEDITETSVAHILDSHRTEN 509
+ +A K D E+ M EA+ A E +E + + +
Sbjct: 153 LHYQRAYKTDYELDCMREANKLAVAGHKAAEQAFR------EGKSEFDINLAYAAASRQG 206
Query: 510 TISRGISFESIVAYGEHAALPHYTPSNATNVVVRGDAPLLVDSGGHYM 557
+ + SIVA EHA++ HY + V + L+D+G +Y
Sbjct: 207 --DNDVPYTSIVALNEHASILHYMQCD--TVAPKESRSFLIDAGANYH 250
>3l24_A XAA-Pro dipeptidase; PITA-bread, detoxification, hydrolase,
manganese, metal-binding, metalloprotease, protease;
2.30A {Alteromonas SP} PDB: 3l7g_A*
Length = 517
Score = 41.7 bits (98), Expect = 5e-04
Identities = 20/107 (18%), Positives = 36/107 (33%), Gaps = 10/107 (9%)
Query: 450 IIEMKAQKNDVEIKGMHEAHIRDAVIFCDAMAFVEDQYFRGEDITETSVAHILDSHRTEN 509
+A K E+ M EA+ A + +E + +
Sbjct: 153 YHYHRAYKTQYELACMREANKIAVQGHKAARDAFF------QGKSEFEIQQAYLLATQHS 206
Query: 510 TISRGISFESIVAYGEHAALPHYTPSNATNVVVRGDAPLLVDSGGHY 556
+ +IVA E+ A+ HYT + V L+D+G ++
Sbjct: 207 --ENDNPYGNIVALNENCAILHYTHFD--RVAPATHRSFLIDAGANF 249
>3i7m_A XAA-Pro dipeptidase; structural genomics, APC64794.2, metall
peptidase, creatinase/prolidase N-terminal domain,
PSI-2; HET: MSE; 1.46A {Lactobacillus brevis}
Length = 140
Score = 35.5 bits (82), Expect = 0.013
Identities = 7/63 (11%), Positives = 21/63 (33%), Gaps = 3/63 (4%)
Query: 312 SYQNKFERVRRILRSVDCDALIVTALDEIAWLLNIRAWDLPHSPFLRAYLAITESQVYLY 371
+ K E++++ ++ I +L + P L A + + +++
Sbjct: 1 GHMTKLEQIQQWTAQHHASMTYLSNPKTIEYLTGFGSD--PIERVL-ALVVFPDQDPFIF 57
Query: 372 TDE 374
Sbjct: 58 APA 60
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.046
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 432 KAITTLFSPDKRYAAPS-PIIEMKAQKNDVE 461
+A+ L + K YA S P + +KA +E
Sbjct: 20 QALKKLQASLKLYADDSAPALAIKAT---ME 47
Score = 32.6 bits (73), Expect = 0.15
Identities = 8/24 (33%), Positives = 15/24 (62%), Gaps = 4/24 (16%)
Query: 375 KKLSNAVRMYLHIDSCTSP-LCVR 397
KKL ++++Y DS +P L ++
Sbjct: 23 KKLQASLKLYAD-DS--APALAIK 43
>3ooo_A Proline dipeptidase; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG,
hydrolase; HET: MSE; 1.57A {Streptococcus agalactiae}
PDB: 3peb_A*
Length = 132
Score = 31.6 bits (72), Expect = 0.26
Identities = 15/106 (14%), Positives = 33/106 (31%), Gaps = 7/106 (6%)
Query: 184 LKFLSGFSGS----YGFAVVTATKAALWVT-GLDELQADLELSCDWLLMKSGHPGVPTIT 238
+ +L+GF F V + + L+ +A + I
Sbjct: 28 VNYLTGFFCDPHERQMFLFVYEDRDPILFVPALEVSRAKQSVPFPVFGYIDSENPWQKIA 87
Query: 239 EWLKDELGTGMRVGVDPKLIPNSQFEYLQRELNNATILLVQVVNNL 284
L + +V + + ++F+ LQ + L + N+
Sbjct: 88 SNLPSF--SVSKVLAEFDNLNVTKFQGLQTVFDGHFENLTPYIQNM 131
Score = 28.5 bits (64), Expect = 2.3
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 315 NKFERVRRILRSVDCDALIVTALDEIAWLLNIRAW 349
+K R+R L SV + + + + +L
Sbjct: 3 SKLNRIRHHLHSVQAELAVFSDPVTVNYLTGFFCD 37
>3pn9_A Proline dipeptidase; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG,
hydrolase; 2.00A {Streptococcus pneumoniae}
Length = 138
Score = 30.4 bits (69), Expect = 0.65
Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 5/51 (9%)
Query: 313 YQNKFERVRRILRSVDCDALIVTALDEIAWLLNIRAWDLPHSPFLRAYLAI 363
+K +++ L S D +V+ I +L + P R
Sbjct: 3 AMSKLQQILTYLESEKLDVAVVSDPVTINYLTGFYSD-----PHERQMFLF 48
>3o5v_A X-Pro dipeptidase; creatinase, N-terminal, PSI, MCSG, structural G
midwest center for structural genomics; 1.85A
{Streptococcus pyogenes m1 gas}
Length = 132
Score = 28.6 bits (64), Expect = 2.6
Identities = 8/50 (16%), Positives = 14/50 (28%), Gaps = 5/50 (10%)
Query: 314 QNKFERVRRILRSVDCDALIVTALDEIAWLLNIRAWDLPHSPFLRAYLAI 363
K +++R L + I + I +L P R
Sbjct: 2 NAKLDQIRLYLDQKGAELAIFSDPVTINYLTGFFCD-----PHERQLFLF 46
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT;
1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A
2yvh_A 2dh0_A* 2zoz_A*
Length = 185
Score = 28.2 bits (63), Expect = 4.7
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 8 RLILARIDGTTDVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLH 57
L+ DG V +H ++ + +A T+L +I T + H H
Sbjct: 137 YLVQLAADGLF-VHDYIHDDVLSKSKRQAMLETILELIPSQTELHHHHHH 185
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.413
Gapped
Lambda K H
0.267 0.0748 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,953,458
Number of extensions: 564808
Number of successful extensions: 1229
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1178
Number of HSP's successfully gapped: 60
Length of query: 559
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 461
Effective length of database: 3,965,535
Effective search space: 1828111635
Effective search space used: 1828111635
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.9 bits)