RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6861
(559 letters)
>d1pv9a2 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal domain
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 221
Score = 53.4 bits (127), Expect = 1e-08
Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 7/120 (5%)
Query: 19 DVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLWKLGRDYPH 78
D++RT+ +GSP +Q E Y L R A P + +LD +AR + + G
Sbjct: 96 DITRTIVVGSPNEKQREIYEIVLEAQKRAVEAAKPGM-TAKELDSIAREIIKEYGYGDYF 154
Query: 79 GTGHGIGAFSSVHECTISFVQNNTDIYSSILTKVILLLSPEPGYYKEDEFGIRLEDIFEV 138
G G +HE + T + K ++++ EPG Y G+R+ED +
Sbjct: 155 IHSLGHGVGLEIHEWPRISQYDETVL------KEGMVITIEPGIYIPKLGGVRIEDTVLI 208
>d2gg2a1 d.127.1.1 (A:3-264) Methionine aminopeptidase {Escherichia
coli [TaxId: 562]}
Length = 262
Score = 38.7 bits (89), Expect = 0.001
Identities = 12/105 (11%), Positives = 33/105 (31%), Gaps = 13/105 (12%)
Query: 457 KNDVEIKGMHEAHIRDAVIFCDAMAFVEDQYFRGEDITETSVA-----HILDSHRTENTI 511
K +I+ M A A + +V+ ++ + +I++ +
Sbjct: 4 KTPEDIEKMRVAGRLAAEVLEMIEPYVK------PGVSTGELDRICNDYIVNEQHAVSAC 57
Query: 512 SRGISFESIVAYGEHAALPHYTPSNATNVVVRGDAPLLVDSGGHY 556
+ V + + H P +A +++ + +D
Sbjct: 58 LGYHGYPKSVCISINEVVCHGIPDDAK--LLKDGDIVNIDVTVIK 100
>d1o0xa_ d.127.1.1 (A:) Methionine aminopeptidase {Thermotoga
maritima [TaxId: 2336]}
Length = 249
Score = 32.7 bits (73), Expect = 0.081
Identities = 20/127 (15%), Positives = 41/127 (32%), Gaps = 6/127 (4%)
Query: 18 TDVSRTLHLGSPTREQVEAYSRTLLGMIRLATAVFPAHLHSNQLDILARAPLWKLG-RDY 76
D + T +G E T + + + P + + + + +G
Sbjct: 105 GDAAVTYIVGETDERGKELVRVTREVLEKAIKMIKPG-IRLGDVSHCIQETVESVGFNVI 163
Query: 77 PHGTGHGIGAFSSVHECTISFVQNNTDIYSSILTKVILLLSPEPGYYKEDEFGIRLEDIF 136
GHG+G ++ T ++ + + L+ EP + D + ED +
Sbjct: 164 RDYVGHGVGRELHEDPQIPNYGTPGTG----VVLRKGMTLAIEPMVSEGDWRVVVKEDGW 219
Query: 137 EVVYAAG 143
V G
Sbjct: 220 TAVTVDG 226
>d1kp0a1 c.55.2.1 (A:1-156) Creatinase {Actinobacillus sp. [TaxId:
41114]}
Length = 156
Score = 31.7 bits (71), Expect = 0.098
Identities = 6/33 (18%), Positives = 15/33 (45%)
Query: 311 ESYQNKFERVRRILRSVDCDALIVTALDEIAWL 343
+ +R+R + B DA++ T+ I +
Sbjct: 22 AEMTRRZBRLRAWMAKSBIDAVLFTSYHNINYY 54
>d1chma1 c.55.2.1 (A:2-156) Creatinase {Pseudomonas putida [TaxId:
303]}
Length = 155
Score = 31.3 bits (70), Expect = 0.16
Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 6/82 (7%)
Query: 313 YQNKFERVRRILRSVDCDALIVTALDEIAWLLNIRAWDLPHSPFLRAYLA-ITESQVYLY 371
Y N+ R+R L + + DA I T+ I + D + F R Y +TE V
Sbjct: 23 YANRQARLRAHLAAENIDAAIFTSYHNINYYS-----DFLYCSFGRPYALVVTEDDVISI 77
Query: 372 TDEKKLSNAVRMYLHIDSCTSP 393
+ R + D+
Sbjct: 78 SANIDGGQPWRRTVGTDNIVYT 99
>d1chma2 d.127.1.1 (A:157-402) Creatinase, catalytic (C-terminal)
domain {Pseudomonas putida [TaxId: 303]}
Length = 246
Score = 30.4 bits (67), Expect = 0.43
Identities = 7/85 (8%), Positives = 21/85 (24%), Gaps = 11/85 (12%)
Query: 457 KNDVEIKGMHEAHIRDAVIFCDAMAFVEDQYFRGEDITETSVA-----HILDSHRTENTI 511
K+ E + + + + + + E VA ++ +
Sbjct: 3 KSAEEHVMIRHGARIADIGGAAVVEALG------DQVPEYEVALHATQAMVRAIADTFED 56
Query: 512 SRGISFESIVAYGEHAALPHYTPSN 536
+ + G + H +
Sbjct: 57 VELMDTWTWFQSGINTDGAHNPVTT 81
>d1jmsa3 a.60.12.1 (A:243-302) Terminal deoxynucleotidyl transferase
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 60
Score = 26.2 bits (58), Expect = 1.9
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 7/45 (15%)
Query: 181 DERLKFLSGFSGSYGFAVVTATKAALWV----TGLDELQADLELS 221
DER K F+ +G + TA K W L ++Q+D L
Sbjct: 1 DERYKSFKLFTSVFGVGLKTAEK---WFRMGFRTLSKIQSDKSLR 42
>d1qxya_ d.127.1.1 (A:) Methionine aminopeptidase {Staphylococcus
aureus [TaxId: 1280]}
Length = 249
Score = 27.8 bits (60), Expect = 3.6
Identities = 15/101 (14%), Positives = 30/101 (29%), Gaps = 7/101 (6%)
Query: 457 KNDVEIKGMHEAHIRDAVIFCDAMAFVEDQYFRGEDITETSVAHIL-DSHRTENTISRGI 515
K + E++ + E A + A + IT + +I + IS I
Sbjct: 4 KTEEELQALKEIGYICAKVRNTMQAATK------PGITTKELDNIAKELFEEYGAISAPI 57
Query: 516 SFESIVAYGEHAALPHYTPSNATNVVVRGDAPLLVDSGGHY 556
E+ + + V+R + +D
Sbjct: 58 HDENFPGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALK 98
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25
{Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 26.5 bits (57), Expect = 5.6
Identities = 12/146 (8%), Positives = 34/146 (23%), Gaps = 9/146 (6%)
Query: 303 IIQNEIAGESYQNKFERVRRILRSVDCDALIVTA-----LDEIAWLLNIRAWDLPHSPFL 357
I Q + E ++K++ + I S+ I+ + + +
Sbjct: 6 IRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGE 65
Query: 358 RAYLAITESQVYLYTDEKKLSNAVRMYLHIDSCTSPLCVRVKEYEKVWNDLRNIGLYWNR 417
++K+ + V + + + Y
Sbjct: 66 LTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETY--- 122
Query: 418 IWLPSQIAYSAGVSKAITTLFSPDKR 443
+ + A + D+
Sbjct: 123 LHRIGRTGRFGKKGLAF-NMIEVDEL 147
>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus
subtilis [TaxId: 1423]}
Length = 372
Score = 26.9 bits (59), Expect = 7.0
Identities = 8/49 (16%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 511 ISRGISFESIVAYGEHAALPHYTPSNATNVVVRGDAPL-LVDSGGHYMV 558
IS ++ ++ H+ ++ G A + +VD G +
Sbjct: 68 ISENLASVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFI 116
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.413
Gapped
Lambda K H
0.267 0.0429 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,154,251
Number of extensions: 104942
Number of successful extensions: 259
Number of sequences better than 10.0: 1
Number of HSP's gapped: 257
Number of HSP's successfully gapped: 15
Length of query: 559
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 469
Effective length of database: 1,171,896
Effective search space: 549619224
Effective search space used: 549619224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.7 bits)