BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6862
(315 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4I5I|A Chain A, Crystal Structure Of The Sirt1 Catalytic Domain Bound To
Nad And An Ex527 Analog
pdb|4I5I|B Chain B, Crystal Structure Of The Sirt1 Catalytic Domain Bound To
Nad And An Ex527 Analog
Length = 287
Score = 211 bits (537), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 94/124 (75%), Positives = 111/124 (89%)
Query: 179 IGTFNDVIHLLKTCSKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDI 238
+ T D + LL+ C KIIVLTGAGVSVSCGIPDFRSRDGIY+RLAVDFP+LPDPQAMFDI
Sbjct: 3 LNTIEDAVKLLQECKKIIVLTGAGVSVSCGIPDFRSRDGIYARLAVDFPDLPDPQAMFDI 62
Query: 239 NYFKQDPRPFFKFAREIYPGQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGIENV 298
YF++DPRPFFKFA+EIYPGQF+PS CH+FI + ++ GKLLRNY+QNIDTLEQVAGI+ +
Sbjct: 63 EYFRKDPRPFFKFAKEIYPGQFQPSLCHKFIALSDKEGKLLRNYTQNIDTLEQVAGIQRI 122
Query: 299 IECH 302
I+CH
Sbjct: 123 IQCH 126
>pdb|1J8F|A Chain A, Human Sirt2 Histone Deacetylase
Length = 323
Score = 132 bits (331), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 65/136 (47%), Positives = 96/136 (70%), Gaps = 7/136 (5%)
Query: 172 RRQRLRHIGTFNDVIHLLKT--CSKIIVLTGAGVSVSCGIPDFRS-RDGIYSRLAVDFPN 228
+++RL T V +++ C ++I L GAG+S S GIPDFRS G+Y L + +
Sbjct: 21 QKERLLDELTLEGVARYMQSERCRRVICLVGAGISTSAGIPDFRSPSTGLYDNL--EKYH 78
Query: 229 LPDPQAMFDINYFKQDPRPFFKFAREIYPGQFKPSPCHRFIKMLERHGKLLRNYSQNIDT 288
LP P+A+F+I+YFK+ P PFF A+E+YPGQFKP+ CH F+++L+ G LLR Y+QNIDT
Sbjct: 79 LPYPEAIFEISYFKKHPEPFFALAKELYPGQFKPTICHYFMRLLKDKGLLLRCYTQNIDT 138
Query: 289 LEQVAGI--ENVIECH 302
LE++AG+ E+++E H
Sbjct: 139 LERIAGLEQEDLVEAH 154
>pdb|1J8F|C Chain C, Human Sirt2 Histone Deacetylase
pdb|1J8F|B Chain B, Human Sirt2 Histone Deacetylase
Length = 323
Score = 132 bits (331), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 65/136 (47%), Positives = 96/136 (70%), Gaps = 7/136 (5%)
Query: 172 RRQRLRHIGTFNDVIHLLKT--CSKIIVLTGAGVSVSCGIPDFRS-RDGIYSRLAVDFPN 228
+++RL T V +++ C ++I L GAG+S S GIPDFRS G+Y L + +
Sbjct: 21 QKERLLDELTLEGVARYMQSERCRRVICLVGAGISTSAGIPDFRSPSTGLYDNL--EKYH 78
Query: 229 LPDPQAMFDINYFKQDPRPFFKFAREIYPGQFKPSPCHRFIKMLERHGKLLRNYSQNIDT 288
LP P+A+F+I+YFK+ P PFF A+E+YPGQFKP+ CH F+++L+ G LLR Y+QNIDT
Sbjct: 79 LPYPEAIFEISYFKKHPEPFFALAKELYPGQFKPTICHYFMRLLKDKGLLLRCYTQNIDT 138
Query: 289 LEQVAGI--ENVIECH 302
LE++AG+ E+++E H
Sbjct: 139 LERIAGLEQEDLVEAH 154
>pdb|4IAO|A Chain A, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid
Domain Of Sir4
pdb|4IAO|B Chain B, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid
Domain Of Sir4
Length = 492
Score = 124 bits (311), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 95/160 (59%), Gaps = 12/160 (7%)
Query: 153 HIDDQTAWRLVLNMICEPRR--------RQRLRHIGTFNDVIHLLKTCSKIIVLTGAGVS 204
+++D A + + +I + +R R RL + T + I L T KI+VLTGAGVS
Sbjct: 137 NVEDPLAKKQTVRLIKDLQRAINKVLCTRLRLSNFFTIDHFIQKLHTARKILVLTGAGVS 196
Query: 205 VSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFKQDPRPFFKFAREIYPGQFKPSP 264
S GIPDFRS +G YS+ + L DPQ +F+ N F DP F+ A + P + SP
Sbjct: 197 TSLGIPDFRSSEGFYSK--IKHLGLDDPQDVFNYNIFMHDPSVFYNIANMVLPPEKIYSP 254
Query: 265 CHRFIKMLERHGKLLRNYSQNIDTLEQVAGI--ENVIECH 302
H FIKML+ GKLLRNY+QNID LE AGI + +++CH
Sbjct: 255 LHSFIKMLQMKGKLLRNYTQNIDNLESYAGISTDKLVQCH 294
>pdb|2HJH|A Chain A, Crystal Structure Of The Sir2 Deacetylase
pdb|2HJH|B Chain B, Crystal Structure Of The Sir2 Deacetylase
Length = 354
Score = 120 bits (302), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 87/144 (60%), Gaps = 7/144 (4%)
Query: 161 RLVLNMICEPRRRQRLRHIGTFNDVIHLLKTCSKIIVLTGAGVSVSCGIPDFRSRDGIYS 220
R + ++C R RL + T + I L T KI+VLTGAGVS S GIPDFRS +G YS
Sbjct: 18 RAINKVLCT---RLRLSNFFTIDHFIQKLHTARKILVLTGAGVSTSLGIPDFRSSEGFYS 74
Query: 221 RLAVDFPNLPDPQAMFDINYFKQDPRPFFKFAREIYPGQFKPSPCHRFIKMLERHGKLLR 280
+ + L DPQ +F+ N F DP F+ A + P + SP H FIK L+ GKLLR
Sbjct: 75 K--IKHLGLDDPQDVFNYNIFXHDPSVFYNIANXVLPPEKIYSPLHSFIKXLQXKGKLLR 132
Query: 281 NYSQNIDTLEQVAGI--ENVIECH 302
NY+QNID LE AGI + +++CH
Sbjct: 133 NYTQNIDNLESYAGISTDKLVQCH 156
>pdb|3GLR|A Chain A, Crystal Structure Of Human Sirt3 With Acetyl-Lysine Acecs2
Peptide
pdb|3GLS|A Chain A, Crystal Structure Of Human Sirt3
pdb|3GLS|B Chain B, Crystal Structure Of Human Sirt3
pdb|3GLS|C Chain C, Crystal Structure Of Human Sirt3
pdb|3GLS|D Chain D, Crystal Structure Of Human Sirt3
pdb|3GLS|E Chain E, Crystal Structure Of Human Sirt3
pdb|3GLS|F Chain F, Crystal Structure Of Human Sirt3
pdb|3GLT|A Chain A, Crystal Structure Of Human Sirt3 With Adpr Bound To The
Acecs2 Peptide Containing A Thioacetyl Lysine
pdb|3GLU|A Chain A, Crystal Structure Of Human Sirt3 With Acecs2 Peptide
Length = 285
Score = 117 bits (293), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 60/142 (42%), Positives = 90/142 (63%), Gaps = 12/142 (8%)
Query: 181 TFNDVIHLLKT--CSKIIVLTGAGVSVSCGIPDFRS-RDGIYSRLAVDFPNLPDPQAMFD 237
+ DV L++ C +++V+ GAG+S GIPDFRS G+YS L +LP P+A+F+
Sbjct: 10 SLQDVAELIRARACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQY--DLPYPEAIFE 67
Query: 238 INYFKQDPRPFFKFAREIYPGQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGI-- 295
+ +F +P+PFF A+E+YPG +KP+ H F+++L G LLR Y+QNID LE+V+GI
Sbjct: 68 LPFFFHNPKPFFTLAKELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPA 127
Query: 296 ENVIECHDWVG-----VCRRPL 312
++E H VC+RP
Sbjct: 128 SKLVEAHGTFASATCTVCQRPF 149
>pdb|4HD8|A Chain A, Crystal Structure Of Human Sirt3 In Complex With
Fluor-de-lys Peptide And Piceatannol
Length = 284
Score = 117 bits (293), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 60/142 (42%), Positives = 90/142 (63%), Gaps = 12/142 (8%)
Query: 181 TFNDVIHLLKT--CSKIIVLTGAGVSVSCGIPDFRS-RDGIYSRLAVDFPNLPDPQAMFD 237
+ DV L++ C +++V+ GAG+S GIPDFRS G+YS L +LP P+A+F+
Sbjct: 9 SLQDVAELIRARACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQY--DLPYPEAIFE 66
Query: 238 INYFKQDPRPFFKFAREIYPGQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGI-- 295
+ +F +P+PFF A+E+YPG +KP+ H F+++L G LLR Y+QNID LE+V+GI
Sbjct: 67 LPFFFHNPKPFFTLAKELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPA 126
Query: 296 ENVIECHDWVG-----VCRRPL 312
++E H VC+RP
Sbjct: 127 SKLVEAHGTFASATCTVCQRPF 148
>pdb|4FVT|A Chain A, Human Sirt3 Bound To Ac-Acs Peptide And Carba-Nad
Length = 274
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/142 (42%), Positives = 90/142 (63%), Gaps = 12/142 (8%)
Query: 181 TFNDVIHLLKT--CSKIIVLTGAGVSVSCGIPDFRS-RDGIYSRLAVDFPNLPDPQAMFD 237
+ DV L++ C +++V+ GAG+S GIPDFRS G+YS L +LP P+A+F+
Sbjct: 3 SLQDVAELIRARACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQY--DLPYPEAIFE 60
Query: 238 INYFKQDPRPFFKFAREIYPGQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGI-- 295
+ +F +P+PFF A+E+YPG +KP+ H F+++L G LLR Y+QNID LE+V+GI
Sbjct: 61 LPFFFHNPKPFFTLAKELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPA 120
Query: 296 ENVIECHDWVG-----VCRRPL 312
++E H VC+RP
Sbjct: 121 SKLVEAHGTFASATCTVCQRPF 142
>pdb|1Q14|A Chain A, Structure And Autoregulation Of The Yeast Hst2 Homolog Of
Sir2
Length = 361
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 80/119 (67%), Gaps = 5/119 (4%)
Query: 193 SKIIVLTGAGVSVSCGIPDFRS-RDGIYSRLAVDFPNLPDPQAMFDINYFKQDPRPFFKF 251
+K+I + GAG+S SCGIPDFRS G+Y LA LP P+A+FD+++F+ DP PF+
Sbjct: 29 AKVIFMVGAGISTSCGIPDFRSPGTGLYHNLAR--LKLPYPEAVFDVDFFQSDPLPFYTL 86
Query: 252 AREIYPGQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGIEN--VIECHDWVGVC 308
A+E+YPG F+PS H +K+ + L R Y+QNIDTLE+ AG+++ +IE H C
Sbjct: 87 AKELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHC 145
>pdb|1Q17|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
pdb|1Q17|B Chain B, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
pdb|1Q17|C Chain C, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
Length = 300
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 80/119 (67%), Gaps = 5/119 (4%)
Query: 193 SKIIVLTGAGVSVSCGIPDFRS-RDGIYSRLAVDFPNLPDPQAMFDINYFKQDPRPFFKF 251
+K+I + GAG+S SCGIPDFRS G+Y LA LP P+A+FD+++F+ DP PF+
Sbjct: 31 AKVIFMVGAGISTSCGIPDFRSPGTGLYHNLAR--LKLPYPEAVFDVDFFQSDPLPFYTL 88
Query: 252 AREIYPGQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGIEN--VIECHDWVGVC 308
A+E+YPG F+PS H +K+ + L R Y+QNIDTLE+ AG+++ +IE H C
Sbjct: 89 AKELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHC 147
>pdb|2OD7|A Chain A, Crystal Structure Of Yhst2 Bound To The Intermediate
Analogue Adp-Hpd, And And Aceylated H4 Peptide
pdb|2OD9|A Chain A, Structural Basis For Nicotinamide Inhibition And Base
Exchange In Sir2 Enzymes
pdb|2QQF|A Chain A, Hst2 Bound To Adp-Hpd And Acetylated Histone H4
pdb|2QQG|A Chain A, Hst2 Bound To Adp-hpd, Acetyllated Histone H4 And
Nicotinamide
Length = 308
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 80/119 (67%), Gaps = 5/119 (4%)
Query: 193 SKIIVLTGAGVSVSCGIPDFRS-RDGIYSRLAVDFPNLPDPQAMFDINYFKQDPRPFFKF 251
+K+I + GAG+S SCGIPDFRS G+Y LA LP P+A+FD+++F+ DP PF+
Sbjct: 39 AKVIFMVGAGISTSCGIPDFRSPGTGLYHNLAR--LKLPYPEAVFDVDFFQSDPLPFYTL 96
Query: 252 AREIYPGQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGIEN--VIECHDWVGVC 308
A+E+YPG F+PS H +K+ + L R Y+QNIDTLE+ AG+++ +IE H C
Sbjct: 97 AKELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHC 155
>pdb|1SZC|A Chain A, Structural Basis For Nicotinamide Cleavage And Adp-Ribose
Transfer By Nad+-Dependent Sir2 HistonePROTEIN
DEACETYLASES
pdb|1SZD|A Chain A, Structural Basis For Nicotinamide Cleavage And Adp-Ribose
Transfer By Nad+-Dependent Sir2 HistonePROTEIN
DEACETYLASES
Length = 297
Score = 114 bits (286), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 80/119 (67%), Gaps = 5/119 (4%)
Query: 193 SKIIVLTGAGVSVSCGIPDFRS-RDGIYSRLAVDFPNLPDPQAMFDINYFKQDPRPFFKF 251
+K+I + GAG+S SCGIPDFRS G+Y LA LP P+A+FD+++F+ DP PF+
Sbjct: 28 AKVIFMVGAGISTSCGIPDFRSPGTGLYHNLAR--LKLPYPEAVFDVDFFQSDPLPFYTL 85
Query: 252 AREIYPGQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGIEN--VIECHDWVGVC 308
A+E+YPG F+PS H +K+ + L R Y+QNIDTLE+ AG+++ +IE H C
Sbjct: 86 AKELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHC 144
>pdb|1Q1A|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
Length = 289
Score = 114 bits (285), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 80/119 (67%), Gaps = 5/119 (4%)
Query: 193 SKIIVLTGAGVSVSCGIPDFRS-RDGIYSRLAVDFPNLPDPQAMFDINYFKQDPRPFFKF 251
+K+I + GAG+S SCGIPDFRS G+Y LA LP P+A+FD+++F+ DP PF+
Sbjct: 21 AKVIFMVGAGISTSCGIPDFRSPGTGLYHNLAR--LKLPYPEAVFDVDFFQSDPLPFYTL 78
Query: 252 AREIYPGQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGIEN--VIECHDWVGVC 308
A+E+YPG F+PS H +K+ + L R Y+QNIDTLE+ AG+++ +IE H C
Sbjct: 79 AKELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHC 137
>pdb|2OD2|A Chain A, Crystal Structure Of Yhst2 I117f Mutant Bound To
Carba-Nad+ And An Acetylated H4 Peptide
Length = 308
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 79/119 (66%), Gaps = 5/119 (4%)
Query: 193 SKIIVLTGAGVSVSCGIPDFRS-RDGIYSRLAVDFPNLPDPQAMFDINYFKQDPRPFFKF 251
+K+I + GAG+S SCGIPDFRS G+Y LA LP P+A+FD+++F+ DP PF+
Sbjct: 39 AKVIFMVGAGISTSCGIPDFRSPGTGLYHNLAR--LKLPYPEAVFDVDFFQSDPLPFYTL 96
Query: 252 AREIYPGQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGIEN--VIECHDWVGVC 308
A+E+YPG F+PS H +K+ + L R Y+QN DTLE+ AG+++ +IE H C
Sbjct: 97 AKELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNFDTLERQAGVKDDLIIEAHGSFAHC 155
>pdb|1YC5|A Chain A, Sir2-P53 Peptide-Nicotinamide
pdb|2H4F|A Chain A, Sir2-P53 Peptide-Nad+
pdb|2H4J|A Chain A, Sir2-Deacetylated Peptide (From Enzymatic Turnover In
Crystal)
pdb|2H2D|A Chain A, The Structural Basis For Sirtuin Substrate Affinity
pdb|2H2F|A Chain A, The Structural Basis For Sirtuin Substrate Affinity
pdb|2H2G|A Chain A, The Structural Basis Of Sirtuin Substrate Affinity
pdb|2H2H|A Chain A, The Structural Basis Of Sirtuin Substrate Specificity
pdb|2H2I|A Chain A, The Structural Basis Of Sirtuin Substrate Affinity
pdb|3D4B|A Chain A, Crystal Structure Of Sir2tm In Complex With Acetyl P53
Peptide And Dadme-Nad+
pdb|3D81|A Chain A, Sir2-S-Alkylamidate Complex Crystal Structure
pdb|3PDH|A Chain A, Structure Of Sir2tm Bound To A Propionylated Peptide
Length = 246
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 68/126 (53%), Gaps = 11/126 (8%)
Query: 182 FNDVIHLLKTCSKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYF 241
+ + LL + LTGAG+S GIPDFR +GIY + + Q +FDI++F
Sbjct: 3 MKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKYS---------QNVFDIDFF 53
Query: 242 KQDPRPFFKFARE-IYPG-QFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGIENVI 299
P F++FA+E I+P Q KP+ H + LE G + +QNID L Q AG + VI
Sbjct: 54 YSHPEEFYRFAKEGIFPMLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVI 113
Query: 300 ECHDWV 305
E H V
Sbjct: 114 ELHGNV 119
>pdb|2H4H|A Chain A, Sir2 H116y Mutant-P53 Peptide-Nad
Length = 246
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 68/126 (53%), Gaps = 11/126 (8%)
Query: 182 FNDVIHLLKTCSKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYF 241
+ + LL + LTGAG+S GIPDFR +GIY + + Q +FDI++F
Sbjct: 3 MKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKYS---------QNVFDIDFF 53
Query: 242 KQDPRPFFKFARE-IYPG-QFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGIENVI 299
P F++FA+E I+P Q KP+ H + LE G + +QNID L Q AG + VI
Sbjct: 54 YSHPEEFYRFAKEGIFPMLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVI 113
Query: 300 ECHDWV 305
E + V
Sbjct: 114 ELYGNV 119
>pdb|2H59|A Chain A, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose
pdb|2H59|B Chain B, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose
pdb|3JR3|A Chain A, Sir2 Bound To Acetylated Peptide
Length = 246
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 66/121 (54%), Gaps = 11/121 (9%)
Query: 182 FNDVIHLLKTCSKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYF 241
+ + LL + LTGAG+S GIPDFR +GIY + + Q +FDI++F
Sbjct: 3 MKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKYS---------QNVFDIDFF 53
Query: 242 KQDPRPFFKFARE-IYPG-QFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGIENVI 299
P F++FA+E I+P Q KP+ H + LE G + +QNID L Q AG + VI
Sbjct: 54 YSHPEEFYRFAKEGIFPMLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVI 113
Query: 300 E 300
E
Sbjct: 114 E 114
>pdb|1MA3|A Chain A, Structure Of A Sir2 Enzyme Bound To An Acetylated P53
Peptide
pdb|1S7G|A Chain A, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|B Chain B, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|C Chain C, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|D Chain D, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|E Chain E, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1YC2|A Chain A, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|B Chain B, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|C Chain C, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|D Chain D, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|E Chain E, Sir2af2-Nad-Adpribose-Nicotinamide
Length = 253
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 64/117 (54%), Gaps = 9/117 (7%)
Query: 187 HLLKTCSKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFKQDPR 246
+L +V TGAG+S GIP FR DG++ + DP+ + I+ FK++PR
Sbjct: 10 EILAKSKHAVVFTGAGISAESGIPTFRGEDGLWRKY--------DPEEVASISGFKRNPR 61
Query: 247 PFFKFAREIYPGQF-KPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECH 302
F++F+ E+ F +P+P H I LER G + +QNID L Q AG V+E H
Sbjct: 62 AFWEFSMEMKDKLFAEPNPAHYAIAELERMGIVKAVITQNIDMLHQRAGSRRVLELH 118
>pdb|1M2N|A Chain A, Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acetyl Adp
Ribose Complex
pdb|1M2N|B Chain B, Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acetyl Adp
Ribose Complex
Length = 249
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 69/129 (53%), Gaps = 17/129 (13%)
Query: 188 LLKTCSK---IIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFKQD 244
LLKT ++ ++ LTGAGVS GIP FR +DG+++R + L +PQA F +D
Sbjct: 5 LLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNRYRPE--ELANPQA------FAKD 56
Query: 245 PRPFFKF----AREIYPGQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIE 300
P +K+ +++ Q P+ H+ LER G L +QN+D L + AG NVI
Sbjct: 57 PEKVWKWYAWRMEKVFNAQ--PNKAHQAFAELERLGVLKCLITQNVDGLHERAGSRNVIH 114
Query: 301 CHDWVGVCR 309
H + V R
Sbjct: 115 LHGSLRVVR 123
>pdb|1M2K|A Chain A, Sir2 Homologue F159a Mutant-Adp Ribose Complex
Length = 249
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 69/129 (53%), Gaps = 17/129 (13%)
Query: 188 LLKTCSK---IIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFKQD 244
LLKT ++ ++ LTGAGVS GIP FR +DG+++R + L +PQA F +D
Sbjct: 5 LLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNRYRPE--ELANPQA------FAKD 56
Query: 245 PRPFFKF----AREIYPGQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIE 300
P +K+ +++ Q P+ H+ LER G L +QN+D L + AG NVI
Sbjct: 57 PEKVWKWYAWRMEKVFNAQ--PNKAHQAFAELERLGVLKCLITQNVDDLHERAGSRNVIH 114
Query: 301 CHDWVGVCR 309
H + V R
Sbjct: 115 LHGSLRVVR 123
>pdb|1M2G|A Chain A, Sir2 Homologue-Adp Ribose Complex
Length = 249
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 69/129 (53%), Gaps = 17/129 (13%)
Query: 188 LLKTCSK---IIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFKQD 244
LLKT ++ ++ LTGAGVS GIP FR +DG+++R + L +PQA F +D
Sbjct: 5 LLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNRYRPE--ELANPQA------FAKD 56
Query: 245 PRPFFKF----AREIYPGQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIE 300
P +K+ +++ Q P+ H+ LER G L +QN+D L + AG NVI
Sbjct: 57 PEKVWKWYAWRMEKVFNAQ--PNKAHQAFAELERLGVLKCLITQNVDDLHERAGSRNVIH 114
Query: 301 CHDWVGVCR 309
H + V R
Sbjct: 115 LHGSLRVVR 123
>pdb|1ICI|A Chain A, Crystal Structure Of A Sir2 Homolog-Nad Complex
pdb|1ICI|B Chain B, Crystal Structure Of A Sir2 Homolog-Nad Complex
Length = 256
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 69/129 (53%), Gaps = 17/129 (13%)
Query: 188 LLKTCSK---IIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFKQD 244
LLKT ++ ++ LTGAGVS GIP FR +DG+++R + L +PQA F +D
Sbjct: 16 LLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNRYRPE--ELANPQA------FAKD 67
Query: 245 PRPFFKF----AREIYPGQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIE 300
P +K+ +++ Q P+ H+ LER G L +QN+D L + AG NVI
Sbjct: 68 PEKVWKWYAWRMEKVFNAQ--PNKAHQAFAELERLGVLKCLITQNVDDLHERAGSRNVIH 125
Query: 301 CHDWVGVCR 309
H + V R
Sbjct: 126 LHGSLRVVR 134
>pdb|1M2H|A Chain A, Sir2 Homologue S24a Mutant-adp Ribose Complex
Length = 249
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 69/129 (53%), Gaps = 17/129 (13%)
Query: 188 LLKTCSK---IIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFKQD 244
LLKT ++ ++ LTGAGV+ GIP FR +DG+++R + L +PQA F +D
Sbjct: 5 LLKTIAESKYLVALTGAGVAAESGIPTFRGKDGLWNRYRPE--ELANPQA------FAKD 56
Query: 245 PRPFFKF----AREIYPGQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIE 300
P +K+ +++ Q P+ H+ LER G L +QN+D L + AG NVI
Sbjct: 57 PEKVWKWYAWRMEKVFNAQ--PNKAHQAFAELERLGVLKCLITQNVDDLHERAGSRNVIH 114
Query: 301 CHDWVGVCR 309
H + V R
Sbjct: 115 LHGSLRVVR 123
>pdb|1M2J|A Chain A, Sir2 Homologue H80n Mutant-Adp Ribose Complex
Length = 249
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 69/130 (53%), Gaps = 17/130 (13%)
Query: 187 HLLKTCSK---IIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFKQ 243
LLKT ++ ++ LTGAGVS GIP FR +DG+++R + L +PQA F +
Sbjct: 4 KLLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNRYRPE--ELANPQA------FAK 55
Query: 244 DPRPFFKF----AREIYPGQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGIENVI 299
DP +K+ +++ Q P+ ++ LER G L +QN+D L + AG NVI
Sbjct: 56 DPEKVWKWYAWRMEKVFNAQ--PNKANQAFAELERLGVLKCLITQNVDDLHERAGSRNVI 113
Query: 300 ECHDWVGVCR 309
H + V R
Sbjct: 114 HLHGSLRVVR 123
>pdb|2NYR|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5 In Complex
With Suramin
pdb|2NYR|B Chain B, Crystal Structure Of Human Sirtuin Homolog 5 In Complex
With Suramin
Length = 271
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 16/130 (12%)
Query: 181 TFNDVIHLLKTCSKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINY 240
+ D I++++GAGVS G+P FR G + + +L P A
Sbjct: 8 SMADFRKFFAKAKHIVIISGAGVSAESGVPTFRGAGGYWRKWQAQ--DLATPLA------ 59
Query: 241 FKQDPR---PFFKFAREIYPGQFKPSPCHRFIKMLE----RHGKLLRNYSQNIDTLEQVA 293
F +P F+ + RE+ G +P+ HR I E + G+ + +QNID L + A
Sbjct: 60 FAHNPSRVWEFYHYRREVM-GSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKA 118
Query: 294 GIENVIECHD 303
G +N++E H
Sbjct: 119 GTKNLLEIHG 128
>pdb|3RIG|A Chain A, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIG|B Chain B, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIY|A Chain A, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIY|B Chain B, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|4F4U|A Chain A, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F4U|B Chain B, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F56|A Chain A, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F56|B Chain B, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
Length = 273
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 16/130 (12%)
Query: 181 TFNDVIHLLKTCSKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINY 240
+ D I++++GAGVS G+P FR G + + +L P A
Sbjct: 10 SMADFRKFFAKAKHIVIISGAGVSAESGVPTFRGAGGYWRKWQAQ--DLATPLA------ 61
Query: 241 FKQDPR---PFFKFAREIYPGQFKPSPCHRFIKMLE----RHGKLLRNYSQNIDTLEQVA 293
F +P F+ + RE+ G +P+ HR I E + G+ + +QNID L + A
Sbjct: 62 FAHNPSRVWEFYHYRREVM-GSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKA 120
Query: 294 GIENVIECHD 303
G +N++E H
Sbjct: 121 GTKNLLEIHG 130
>pdb|4G1C|A Chain A, Human Sirt5 Bound To Succ-Idh2 And Carba-Nad
pdb|4G1C|B Chain B, Human Sirt5 Bound To Succ-Idh2 And Carba-Nad
Length = 267
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 16/129 (12%)
Query: 181 TFNDVIHLLKTCSKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINY 240
+ D I++++GAGVS G+P FR G + + +L P A
Sbjct: 4 SMADFRKFFAKAKHIVIISGAGVSAESGVPTFRGAGGYWRKWQAQ--DLATPLA------ 55
Query: 241 FKQDPR---PFFKFAREIYPGQFKPSPCHRFIKMLE----RHGKLLRNYSQNIDTLEQVA 293
F +P F+ + RE+ G +P+ HR I E + G+ + +QNID L + A
Sbjct: 56 FAHNPSRVWEFYHYRREVM-GSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKA 114
Query: 294 GIENVIECH 302
G +N++E H
Sbjct: 115 GTKNLLEIH 123
>pdb|4HDA|A Chain A, Crystal Structure Of Human Sirt5 In Complex With
Fluor-de-lys Peptide And Resveratrol
pdb|4HDA|B Chain B, Crystal Structure Of Human Sirt5 In Complex With
Fluor-de-lys Peptide And Resveratrol
Length = 275
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 16/129 (12%)
Query: 181 TFNDVIHLLKTCSKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINY 240
+ D I++++GAGVS G+P FR G + + +L P A
Sbjct: 12 SMADFRKFFAKAKHIVIISGAGVSAESGVPTFRGAGGYWRKWQAQ--DLATPLA------ 63
Query: 241 FKQDPR---PFFKFAREIYPGQFKPSPCHRFIKMLE----RHGKLLRNYSQNIDTLEQVA 293
F +P F+ + RE+ G +P+ HR I E + G+ + +QNID L + A
Sbjct: 64 FAHNPSRVWEFYHYRREVM-GSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKA 122
Query: 294 GIENVIECH 302
G +N++E H
Sbjct: 123 GTKNLLEIH 131
>pdb|2B4Y|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|B Chain B, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|C Chain C, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|D Chain D, Crystal Structure Of Human Sirtuin Homolog 5
Length = 271
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 16/127 (12%)
Query: 184 DVIHLLKTCSKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFKQ 243
D I++++GAGVS G+P FR G + + +L P A F
Sbjct: 11 DFRKFFAKAKHIVIISGAGVSAESGVPTFRGAGGYWRKWQAQ--DLATPLA------FAH 62
Query: 244 DPR---PFFKFAREIYPGQFKPSPCHRFIKMLE----RHGKLLRNYSQNIDTLEQVAGIE 296
+P F+ + RE+ G +P+ HR I E + G+ + +QNID L + AG +
Sbjct: 63 NPSRVWEFYHYRREVX-GSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTK 121
Query: 297 NVIECHD 303
N++E H
Sbjct: 122 NLLEIHG 128
>pdb|3U31|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes
Medium And Long Chain Fatty Acyl Lysine
pdb|3U3D|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes
Medium And Long Chain Fatty Acyl Lysine
Length = 290
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 12/132 (9%)
Query: 181 TFNDVIHLLKTCSKIIVLTGAGVSVSCGIPDFR-SRDGIYSRLAVDFPNLPDPQAMFDIN 239
T ++ ++K C ++ LTG+G S IP FR S + I+S+ DP+ I
Sbjct: 34 TLEELAKIIKKCKHVVALTGSGTSAESNIPSFRGSSNSIWSKY--------DPRIYGTIW 85
Query: 240 YFKQDPRPFFKFAREIYPG-QFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGIENV 298
F + P ++ R+I + + + H + LE G L +QN+D L + +G V
Sbjct: 86 GFWKYPEKIWEVIRDISSDYEIEINNGHVALSTLESLGYLKSVVTQNVDGLHEASGNTKV 145
Query: 299 IECHDWV--GVC 308
I H V VC
Sbjct: 146 ISLHGNVFEAVC 157
>pdb|3JWP|A Chain A, Crystal Structure Of Plasmodium Falciparum Sir2a
(Pf13_0152) In Complex With Amp
Length = 265
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 10/124 (8%)
Query: 181 TFNDVIHLLKTCSKIIVLTGAGVSVSCGIPDFR-SRDGIYSRLAVDFPNLPDPQAMFDIN 239
T ++ ++K C ++ LTG+G S IP FR S + I+S+ DP+ I
Sbjct: 9 TLEELAKIIKKCKHVVALTGSGTSAESNIPSFRGSSNSIWSKY--------DPRIYGTIW 60
Query: 240 YFKQDPRPFFKFAREIYPG-QFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGIENV 298
F + P ++ R+I + + + H + LE G L +QN+D L + +G V
Sbjct: 61 GFWKYPEKIWEVIRDISSDYEIEINNGHVALSTLESLGYLKSVVTQNVDGLHEASGNTKV 120
Query: 299 IECH 302
I H
Sbjct: 121 ISLH 124
>pdb|1S5P|A Chain A, Structure And Substrate Binding Properties Of Cobb, A Sir2
Homolog Protein Deacetylase From Eschericia Coli
Length = 235
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 13/114 (11%)
Query: 194 KIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFKQDPRPFFKFA- 252
+++VLTGAG+S GI FR+ DG++ V+ P+ F +DP F
Sbjct: 3 RVLVLTGAGISAESGIRTFRAADGLWEEHRVEDVATPEG--------FDRDPELVQAFYN 54
Query: 253 ---REIYPGQFKPSPCH-RFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECH 302
R++ + +P+ H K+ + G +QNID L + AG NVI H
Sbjct: 55 ARRRQLQQPEIQPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAGNTNVIHMH 108
>pdb|3PKI|A Chain A, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|B Chain B, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|C Chain C, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|D Chain D, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|E Chain E, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|F Chain F, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKJ|A Chain A, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|B Chain B, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|C Chain C, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|D Chain D, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|E Chain E, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|F Chain F, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
Length = 355
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 25/121 (20%)
Query: 184 DVIHLLKTCSKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFKQ 243
++ L+ S ++ TGAG+S + GIPDFR G+++ FD
Sbjct: 36 ELARLVWQSSSVVFHTGAGISTASGIPDFRGPHGVWTMEERGL------APKFDTT---- 85
Query: 244 DPRPFFKFAREIYPGQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGI--ENVIEC 301
F+ AR P+ H + LER G L SQN+D L +G + + E
Sbjct: 86 -----FESAR--------PTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAEL 132
Query: 302 H 302
H
Sbjct: 133 H 133
>pdb|3K35|A Chain A, Crystal Structure Of Human Sirt6
pdb|3K35|B Chain B, Crystal Structure Of Human Sirt6
pdb|3K35|C Chain C, Crystal Structure Of Human Sirt6
pdb|3K35|D Chain D, Crystal Structure Of Human Sirt6
pdb|3K35|E Chain E, Crystal Structure Of Human Sirt6
pdb|3K35|F Chain F, Crystal Structure Of Human Sirt6
Length = 318
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 25/121 (20%)
Query: 184 DVIHLLKTCSKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFKQ 243
++ L+ S ++ TGAG+S + GIPDFR G+++ FD
Sbjct: 36 ELARLVWQSSSVVFHTGAGISTASGIPDFRGPHGVWTMEERGL------APKFDTT---- 85
Query: 244 DPRPFFKFAREIYPGQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGI--ENVIEC 301
F+ AR P+ H + LER G L SQN+D L +G + + E
Sbjct: 86 -----FESAR--------PTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAEL 132
Query: 302 H 302
H
Sbjct: 133 H 133
>pdb|2C1I|A Chain A, Structure Of Streptococcus Pnemoniae Peptidoglycan
Deacetylase (Sppgda) D 275 N Mutant
Length = 431
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 108 DISGLDWKSGNFSGSLLWIRKQMANG--INPRDVLSHILGADARIPDHIDDQ 157
D+ LDWKS N + L I+ Q+ANG + D+ S + A R+ +++ +Q
Sbjct: 354 DVDSLDWKSKNEASILTEIQHQVANGSIVLMHDIHSPTVNALPRVIEYLKNQ 405
>pdb|2C1G|A Chain A, Structure Of Streptococcus Pneumoniae Peptidoglycan
Deacetylase (Sppgda)
Length = 431
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 108 DISGLDWKSGNFSGSLLWIRKQMANG--INPRDVLSHILGADARIPDHIDDQ 157
D+ LDWKS N + L I+ Q+ANG + D+ S + A R+ +++ +Q
Sbjct: 354 DVDSLDWKSKNEASILTEIQHQVANGSIVLMHDIHSPTVNALPRVIEYLKNQ 405
>pdb|4FMN|B Chain B, Structure Of The C-terminal Domain Of The Saccharomyces
Cerevisiae Mutl Alpha (mlh1/pms1) Heterodimer Bound To A
Fragment Of Ntg2
pdb|4FMO|B Chain B, Structure Of The C-terminal Domain Of The Saccharomyces
Cerevisiae Mutl Alpha (mlh1/pms1) Heterodimer Bound To A
Fragment Of Exo1
Length = 240
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 13/70 (18%)
Query: 154 IDDQTAWRLVLNMICEPRRRQRLRHIGTFNDVIHLLKT----------CSKI---IVLTG 200
ID++ + + ++ P +Q L +G FN++IHL+K CSKI +
Sbjct: 124 IDEEEEFGSRVKLLSLPTSKQTLFDLGDFNELIHLIKEDGGLRRDNIRCSKIRSMFAMRA 183
Query: 201 AGVSVSCGIP 210
S+ G P
Sbjct: 184 CRSSIMIGKP 193
>pdb|4E4W|B Chain B, Structure Of The C-terminal Domain Of The Saccharomyces
Cerevisiae Mutl Alpha (mlh1/pms1) Heterodimer
Length = 239
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 13/70 (18%)
Query: 154 IDDQTAWRLVLNMICEPRRRQRLRHIGTFNDVIHLLKT----------CSKI---IVLTG 200
ID++ + + ++ P +Q L +G FN++IHL+K CSKI +
Sbjct: 123 IDEEEEFGSRVKLLSLPTSKQTLFDLGDFNELIHLIKEDGGLRRDNIRCSKIRSMFAMRA 182
Query: 201 AGVSVSCGIP 210
S+ G P
Sbjct: 183 CRSSIMIGKP 192
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.141 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,186,409
Number of Sequences: 62578
Number of extensions: 368210
Number of successful extensions: 880
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 806
Number of HSP's gapped (non-prelim): 41
length of query: 315
length of database: 14,973,337
effective HSP length: 99
effective length of query: 216
effective length of database: 8,778,115
effective search space: 1896072840
effective search space used: 1896072840
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)