Query psy6862
Match_columns 315
No_of_seqs 210 out of 1217
Neff 4.4
Searched_HMMs 46136
Date Fri Aug 16 20:18:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6862.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6862hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2684|consensus 100.0 6E-42 1.3E-46 334.7 13.6 186 123-311 18-207 (412)
2 COG0846 SIR2 NAD-dependent pro 100.0 6E-39 1.3E-43 299.1 11.6 124 182-313 2-129 (250)
3 PTZ00409 Sir2 (Silent Informat 100.0 2.8E-38 6.2E-43 296.9 12.5 130 175-313 11-144 (271)
4 PTZ00410 NAD-dependent SIR2; P 100.0 1.2E-36 2.5E-41 295.1 12.5 134 177-313 12-154 (349)
5 PRK00481 NAD-dependent deacety 100.0 1.6E-36 3.4E-41 278.5 11.8 124 181-313 2-129 (242)
6 cd01411 SIR2H SIR2H: Uncharact 100.0 1.6E-36 3.4E-41 276.9 11.3 122 185-313 1-125 (225)
7 cd01408 SIRT1 SIRT1: Eukaryoti 100.0 2.3E-36 5E-41 277.7 11.3 118 193-313 1-123 (235)
8 PRK14138 NAD-dependent deacety 100.0 2.5E-36 5.5E-41 279.0 11.1 121 183-313 2-126 (244)
9 cd01413 SIR2_Af2 SIR2_Af2: Arc 100.0 3.7E-36 7.9E-41 273.8 9.9 116 189-313 1-120 (222)
10 cd01409 SIRT4 SIRT4: Eukaryoti 100.0 2.3E-35 4.9E-40 275.1 10.2 113 185-307 1-118 (260)
11 cd01407 SIR2-fam SIR2 family o 100.0 8.1E-35 1.8E-39 263.2 10.7 112 193-313 1-116 (218)
12 PRK05333 NAD-dependent deacety 100.0 1.9E-34 4E-39 271.5 10.9 123 179-312 6-135 (285)
13 cd01412 SIRT5_Af1_CobB SIRT5_A 100.0 2E-34 4.3E-39 261.0 10.3 113 193-314 1-117 (224)
14 PTZ00408 NAD-dependent deacety 100.0 2.4E-34 5.1E-39 266.3 9.4 113 190-310 2-122 (242)
15 KOG2682|consensus 100.0 4.2E-33 9.1E-38 258.7 6.2 131 179-311 21-156 (314)
16 cd01410 SIRT7 SIRT7: Eukaryoti 100.0 3.7E-32 8.1E-37 245.7 8.6 98 193-313 1-102 (206)
17 PF02146 SIR2: Sir2 family; I 100.0 4.3E-32 9.3E-37 237.7 5.7 105 200-313 1-112 (178)
18 cd00296 SIR2 SIR2 superfamily 100.0 3.9E-31 8.4E-36 236.5 10.4 110 193-310 1-118 (222)
19 KOG2683|consensus 99.9 8.3E-28 1.8E-32 223.2 8.4 121 179-307 32-157 (305)
20 KOG1905|consensus 99.9 1.1E-25 2.4E-30 214.1 4.4 103 180-306 43-147 (353)
21 cd01406 SIR2-like Sir2-like: P 99.2 4.9E-11 1.1E-15 108.8 7.5 113 193-307 1-148 (242)
22 PF04574 DUF592: Protein of un 97.6 3.4E-05 7.3E-10 68.2 2.9 79 118-199 40-153 (153)
23 PF00205 TPP_enzyme_M: Thiamin 64.0 3.7 8.1E-05 34.1 1.3 25 182-206 1-25 (137)
24 PRK00945 acetyl-CoA decarbonyl 57.0 18 0.0004 32.7 4.6 27 179-205 21-47 (171)
25 COG3962 Acetolactate synthase 49.3 18 0.0004 38.2 3.7 77 127-204 150-241 (617)
26 KOG4166|consensus 47.7 22 0.00048 37.3 4.0 30 179-208 285-314 (675)
27 COG0028 IlvB Thiamine pyrophos 44.5 18 0.00039 38.0 2.8 28 180-207 188-215 (550)
28 cd05013 SIS_RpiR RpiR-like pro 44.4 19 0.00041 28.7 2.4 27 181-208 2-28 (139)
29 COG3142 CutC Uncharacterized p 43.4 20 0.00043 34.4 2.7 31 176-206 152-183 (241)
30 TIGR00853 pts-lac PTS system, 42.7 11 0.00025 30.4 0.9 15 192-206 3-17 (95)
31 TIGR00315 cdhB CO dehydrogenas 42.1 26 0.00057 31.4 3.1 26 179-204 14-39 (162)
32 PRK09590 celB cellobiose phosp 40.7 12 0.00026 31.1 0.7 14 193-206 2-15 (104)
33 PRK07524 hypothetical protein; 38.1 25 0.00054 36.0 2.7 27 178-204 187-213 (535)
34 PF02302 PTS_IIB: PTS system, 37.8 13 0.00028 28.5 0.4 13 194-206 1-13 (90)
35 PRK09259 putative oxalyl-CoA d 36.5 28 0.00061 36.1 2.8 27 178-204 199-225 (569)
36 cd05564 PTS_IIB_chitobiose_lic 35.6 17 0.00038 29.2 0.9 13 194-206 1-13 (96)
37 COG1979 Uncharacterized oxidor 33.9 32 0.00069 34.9 2.5 35 180-223 17-51 (384)
38 PRK07586 hypothetical protein; 33.7 33 0.00072 34.9 2.8 28 178-205 183-210 (514)
39 PRK10499 PTS system N,N'-diace 33.3 21 0.00046 29.4 1.1 14 193-206 4-17 (106)
40 PRK06965 acetolactate synthase 33.3 32 0.00068 35.9 2.5 27 179-205 208-234 (587)
41 PRK08273 thiamine pyrophosphat 33.0 31 0.00068 36.0 2.5 27 178-204 194-220 (597)
42 CHL00099 ilvB acetohydroxyacid 32.8 32 0.0007 35.8 2.5 26 179-204 204-229 (585)
43 PF14419 SPOUT_MTase_2: AF2226 32.7 34 0.00074 31.3 2.3 25 182-210 110-134 (173)
44 PRK07789 acetolactate synthase 32.4 35 0.00077 35.8 2.8 27 179-205 218-244 (612)
45 PRK07979 acetolactate synthase 32.0 35 0.00076 35.4 2.6 28 179-206 193-220 (574)
46 TIGR03254 oxalate_oxc oxalyl-C 31.5 38 0.00083 34.9 2.8 27 178-204 192-218 (554)
47 PRK06154 hypothetical protein; 31.3 40 0.00086 35.1 2.9 29 178-206 200-228 (565)
48 TIGR01504 glyox_carbo_lig glyo 31.3 37 0.00081 35.5 2.7 27 179-205 189-215 (588)
49 TIGR02720 pyruv_oxi_spxB pyruv 31.1 37 0.0008 35.4 2.6 27 178-204 186-212 (575)
50 PRK08322 acetolactate synthase 30.6 42 0.0009 34.4 2.9 27 178-204 182-208 (547)
51 TIGR03457 sulphoacet_xsc sulfo 30.4 43 0.00094 34.8 3.0 28 178-205 182-209 (579)
52 COG1440 CelA Phosphotransferas 30.3 27 0.00058 29.5 1.2 14 193-206 2-15 (102)
53 PRK07418 acetolactate synthase 29.9 38 0.00081 35.6 2.5 27 178-204 210-236 (616)
54 PLN02470 acetolactate synthase 29.9 39 0.00085 35.2 2.5 27 178-204 201-227 (585)
55 TIGR02418 acolac_catab acetola 29.8 44 0.00095 34.3 2.9 27 179-205 182-208 (539)
56 PRK06112 acetolactate synthase 29.8 39 0.00085 35.0 2.5 27 178-204 199-225 (578)
57 PRK11269 glyoxylate carboligas 29.6 42 0.0009 35.0 2.7 28 178-205 189-216 (591)
58 PRK08979 acetolactate synthase 29.3 40 0.00086 35.0 2.5 26 179-204 193-218 (572)
59 PHA02698 hypothetical protein; 29.2 44 0.00095 27.2 2.2 17 17-33 5-21 (89)
60 PRK06725 acetolactate synthase 29.2 43 0.00092 34.9 2.7 27 179-205 201-227 (570)
61 PRK09107 acetolactate synthase 28.4 45 0.00096 35.0 2.7 27 179-205 199-225 (595)
62 PRK08327 acetolactate synthase 28.1 49 0.0011 34.4 2.9 28 178-205 206-233 (569)
63 PRK07064 hypothetical protein; 28.1 41 0.00088 34.4 2.3 27 178-204 189-215 (544)
64 PRK07282 acetolactate synthase 28.0 50 0.0011 34.3 2.9 27 179-205 197-223 (566)
65 PRK06457 pyruvate dehydrogenas 27.8 45 0.00097 34.4 2.5 25 180-204 183-207 (549)
66 TIGR00173 menD 2-succinyl-5-en 27.8 47 0.001 33.2 2.6 27 179-205 198-224 (432)
67 TIGR03393 indolpyr_decarb indo 27.7 42 0.00092 34.5 2.3 24 181-204 194-217 (539)
68 PRK06456 acetolactate synthase 27.5 46 0.001 34.4 2.6 26 179-204 194-219 (572)
69 PRK10310 PTS system galactitol 27.4 28 0.0006 28.0 0.8 13 194-206 4-16 (94)
70 PRK08527 acetolactate synthase 27.3 46 0.001 34.4 2.5 28 179-206 190-217 (563)
71 PRK08617 acetolactate synthase 27.2 45 0.00097 34.3 2.4 26 179-204 188-213 (552)
72 TIGR00118 acolac_lg acetolacta 27.1 47 0.001 34.2 2.5 26 179-204 188-213 (558)
73 PRK08978 acetolactate synthase 27.0 44 0.00095 34.3 2.3 26 179-204 183-208 (548)
74 PRK07092 benzoylformate decarb 26.5 48 0.001 34.0 2.5 27 178-204 192-218 (530)
75 PRK07525 sulfoacetaldehyde ace 25.9 58 0.0012 34.0 2.9 27 178-204 186-212 (588)
76 PRK06048 acetolactate synthase 25.8 49 0.0011 34.2 2.4 27 179-205 194-220 (561)
77 PRK06546 pyruvate dehydrogenas 25.0 54 0.0012 34.2 2.5 26 179-204 188-213 (578)
78 PRK06466 acetolactate synthase 24.9 51 0.0011 34.2 2.4 26 179-204 193-218 (574)
79 PRK08155 acetolactate synthase 24.9 52 0.0011 34.0 2.4 27 179-205 198-224 (564)
80 PRK11557 putative DNA-binding 24.8 47 0.001 30.8 1.9 29 177-206 113-141 (278)
81 PLN02573 pyruvate decarboxylas 24.5 52 0.0011 34.4 2.3 27 179-205 211-237 (578)
82 PRK07710 acetolactate synthase 24.5 57 0.0012 33.9 2.6 26 179-204 202-227 (571)
83 PRK12474 hypothetical protein; 24.5 59 0.0013 33.3 2.7 27 178-204 187-213 (518)
84 PRK08611 pyruvate oxidase; Pro 24.4 59 0.0013 33.9 2.7 27 178-204 189-215 (576)
85 PRK06276 acetolactate synthase 24.4 58 0.0012 34.0 2.6 26 179-204 190-215 (586)
86 PRK08199 thiamine pyrophosphat 24.2 61 0.0013 33.4 2.8 26 179-204 191-216 (557)
87 cd05567 PTS_IIB_mannitol PTS_I 24.0 42 0.00092 26.1 1.2 14 193-206 1-14 (87)
88 PRK10892 D-arabinose 5-phospha 23.8 68 0.0015 30.5 2.8 28 181-208 35-62 (326)
89 cd05005 SIS_PHI Hexulose-6-pho 23.7 59 0.0013 28.3 2.2 27 178-205 19-45 (179)
90 PRK05858 hypothetical protein; 23.4 72 0.0016 32.8 3.1 27 178-204 189-215 (542)
91 PRK14717 putative glycine/sarc 22.9 69 0.0015 27.2 2.3 33 182-215 9-50 (107)
92 TIGR03127 RuMP_HxlB 6-phospho 22.9 56 0.0012 28.3 1.9 26 179-205 17-42 (179)
93 COG1029 FwdB Formylmethanofura 22.9 1.3E+02 0.0029 30.9 4.7 60 148-208 198-261 (429)
94 PRK06882 acetolactate synthase 22.8 68 0.0015 33.2 2.8 26 179-204 193-218 (574)
95 PRK11302 DNA-binding transcrip 22.1 64 0.0014 29.8 2.2 30 178-208 114-143 (284)
96 KOG2278|consensus 21.8 33 0.00071 31.9 0.2 121 107-245 71-197 (207)
97 TIGR03394 indol_phenyl_DC indo 20.5 78 0.0017 32.8 2.7 27 179-205 188-214 (535)
98 PRK08266 hypothetical protein; 20.5 76 0.0016 32.5 2.6 26 179-204 192-217 (542)
99 PF11590 DNAPolymera_Pol: DNA 20.2 99 0.0021 22.2 2.3 23 184-206 2-24 (41)
No 1
>KOG2684|consensus
Probab=100.00 E-value=6e-42 Score=334.67 Aligned_cols=186 Identities=44% Similarity=0.761 Sum_probs=166.8
Q ss_pred HHHHHHHhhCCCCHHHHHHHhhcCCCCCCCCCC--hHHHHHHHHHhhcCccccccccccccHHHHHHHHHhCCcEEEEcC
Q psy6862 123 LLWIRKQMANGINPRDVLSHILGADARIPDHID--DQTAWRLVLNMICEPRRRQRLRHIGTFNDVIHLLKTCSKIIVLTG 200 (315)
Q Consensus 123 ~~~~~~~~~~g~~~~~il~~~~~~~~~~p~~~~--~~~~~~~l~~~~~~~~~r~kl~~~~tLe~l~elI~~Ak~IVVlTG 200 (315)
..|.++....|..++.+++.+.+.- .-+.+.+ ...+|.+...++++.++|.++...++++++..++++|++|||+||
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~p~~-~~s~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~t~~~~~~~l~kaKrIvVlTG 96 (412)
T KOG2684|consen 18 LRVNQREFPCGLQSRHILKELVPLI-PPSREYSQEVNLLKDLQSTLLSECLKRARLSNFNTLADFVKLLKKAKRIVVLTG 96 (412)
T ss_pred HHHhhcccccCcchHHHHHhcCccc-CCchhhchhhcccccHHHHHhhhhhhhccCCccccHHHHHHHHHhcCeEEEEeC
Confidence 6777888889999999999976532 1222222 234788888889999999999999999999999999999999999
Q ss_pred CCCCccCCCCCcCCCchhhhccccCCCCCCChhhhcchHhhhcCChHHHHHHHHHcCCCCCCChHHHHHHHHHHcCCcce
Q psy6862 201 AGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFKQDPRPFFKFAREIYPGQFKPSPCHRFIKMLERHGKLLR 280 (315)
Q Consensus 201 AGISaaSGIPDFRs~~Gly~~l~~~f~~l~dP~emfd~~~F~~dP~~Fw~f~r~i~~~~~~Pn~~H~aLa~Le~~Gkl~~ 280 (315)
||||+++|||||||.+|+|+++++ +++++|++|||+.+|+++|..||.|++++++....|++.|.+|++|+++||++|
T Consensus 97 AGVSvs~GIPDFRSs~G~ys~l~~--~~l~sp~~mFd~~~fr~d~~~F~~~a~~l~~~~~~ps~~H~Fi~~L~~~gkLlR 174 (412)
T KOG2684|consen 97 AGVSVSAGIPDFRSSEGIYSKLKA--PDLPSPQAMFDISYFRDDPSIFYRFARELKPPSNNPSAFHEFIKLLEKKGKLLR 174 (412)
T ss_pred CceeeecCCCCccccccHHHHhhc--ccCCCHHHhccchhhhcccHHHHHHHHHhcCCccCCchHHHHHHHHHhcCceeE
Confidence 999999999999999999999987 689999999999999999999999999999888889999999999999999999
Q ss_pred eeecCccchHhhhCCCC--eeEcCccccccCcC
Q psy6862 281 NYSQNIDTLEQVAGIEN--VIECHDWVGVCRRP 311 (315)
Q Consensus 281 VITQNIDgLhqkAG~~k--VIElHGSl~qC~~P 311 (315)
+|||||||||++||++. +++|||||++++|-
T Consensus 175 ~YTQNID~LE~~aGl~~~~lVq~HGSf~t~sCt 207 (412)
T KOG2684|consen 175 NYTQNIDGLERKAGLSTNKLVQCHGSFKTASCT 207 (412)
T ss_pred EeecccchhhhccCCCcCceEEeccccceeeec
Confidence 99999999999999965 99999999965543
No 2
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=100.00 E-value=6e-39 Score=299.09 Aligned_cols=124 Identities=40% Similarity=0.634 Sum_probs=113.3
Q ss_pred HHHHHHHHHhCCcEEEEcCCCCCccCCCCCcCCCchhhhccccCCCCCCChhhhcchHhhhcCChHHHHHHHHHc--CCC
Q psy6862 182 FNDVIHLLKTCSKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFKQDPRPFFKFAREIY--PGQ 259 (315)
Q Consensus 182 Le~l~elI~~Ak~IVVlTGAGISaaSGIPDFRs~~Gly~~l~~~f~~l~dP~emfd~~~F~~dP~~Fw~f~r~i~--~~~ 259 (315)
+++++++|++|++|||+|||||||+|||||||+.+|+|.. . .+|++||+.++|++||+.||.|+++.. ...
T Consensus 2 ~~~~~~~l~~a~~ivvltGAGiSa~sGIpdFR~~~Gl~~~---~----~~p~~l~s~~~f~~~p~~~~~f~~~~~~~~~~ 74 (250)
T COG0846 2 LEEVAQALKEAKRIVVLTGAGISAESGIPDFRSKDGLWSD---K----YDPEDLASPSGFRRDPELVWDFYSERLRLLYL 74 (250)
T ss_pred HHHHHHHHHhcCcEEEEeCCccccccCCCcccCCCCCCCC---C----CCHHHHhCHHHHhhCHHHHHHHHHHHHHhhhc
Confidence 6789999999999999999999999999999999999984 1 289999999999999999999998753 234
Q ss_pred CCCChHHHHHHHHHHcCCcceeeecCccchHhhhCCCCeeEcCcccc--ccCcCCC
Q psy6862 260 FKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHDWVG--VCRRPLN 313 (315)
Q Consensus 260 ~~Pn~~H~aLa~Le~~Gkl~~VITQNIDgLhqkAG~~kVIElHGSl~--qC~~PC~ 313 (315)
++||++|++|++|+++|++++||||||||||++||+++|+|+||++. +|. .|.
T Consensus 75 a~Pn~~H~~la~le~~~~~~~iiTQNiD~Lhe~AGs~~Vi~lHGsl~~~~C~-~C~ 129 (250)
T COG0846 75 AQPNKAHYALAELEDKGKLLRIITQNIDGLHERAGSKNVIELHGSLKRVRCS-KCG 129 (250)
T ss_pred CCCCHHHHHHHHHhhcCCceEEEecccchHHHHcCCCcEEEeccceeeeEeC-CCc
Confidence 79999999999999999999999999999999999999999999997 566 554
No 3
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=100.00 E-value=2.8e-38 Score=296.94 Aligned_cols=130 Identities=28% Similarity=0.448 Sum_probs=118.1
Q ss_pred cccccccHHHHHHHHHhCCcEEEEcCCCCCccCCCCCcCCC-chhhhccccCCCCCCChhhhcchHhhhcCChHHHHHHH
Q psy6862 175 RLRHIGTFNDVIHLLKTCSKIIVLTGAGVSVSCGIPDFRSR-DGIYSRLAVDFPNLPDPQAMFDINYFKQDPRPFFKFAR 253 (315)
Q Consensus 175 kl~~~~tLe~l~elI~~Ak~IVVlTGAGISaaSGIPDFRs~-~Gly~~l~~~f~~l~dP~emfd~~~F~~dP~~Fw~f~r 253 (315)
|+....+++.++++|++|++|||+||||||++|||||||++ +|+|.++ +|+++++..+|..+|+.||+|++
T Consensus 11 ~~~~~~~l~~l~~~l~~s~~ivvlTGAGiSteSGIPdFR~~~~Glw~~~--------~~~~~~t~~~f~~~p~~~~~~~~ 82 (271)
T PTZ00409 11 KVTKSITLEDLADMIRKCKYVVALTGSGTSAESNIPSFRGPSSSIWSKY--------DPKIYGTIWGFWKYPEKIWEVIR 82 (271)
T ss_pred hccccccHHHHHHHHHhCCcEEEEECCeechhhCCCcccCCCCccccCC--------CHHHhccHHHHHHChHHHHHHHH
Confidence 44666789999999999999999999999999999999997 6999864 58889999999999999999998
Q ss_pred HHcC-CCCCCChHHHHHHHHHHcCCcceeeecCccchHhhhCCCCeeEcCcccc--ccCcCCC
Q psy6862 254 EIYP-GQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHDWVG--VCRRPLN 313 (315)
Q Consensus 254 ~i~~-~~~~Pn~~H~aLa~Le~~Gkl~~VITQNIDgLhqkAG~~kVIElHGSl~--qC~~PC~ 313 (315)
++.. ..++||++|++|++|+++|++.+||||||||||++||.++|+|+|||+. +|.. |+
T Consensus 83 ~~~~~~~a~PN~~H~aLa~Le~~g~~~~vITQNIDgLh~rAGs~~V~ElHG~l~~~~C~~-C~ 144 (271)
T PTZ00409 83 DISSDYEIELNPGHVALSTLESLGYLKFVVTQNVDGLHEESGNTKVIPLHGSVFEARCCT-CR 144 (271)
T ss_pred HhhhcccCCCCHHHHHHHHHHhcCCCcEEEeccccchHhHcCCCcEEEeccCcCcceeCC-CC
Confidence 8542 4689999999999999999999999999999999999999999999997 5775 64
No 4
>PTZ00410 NAD-dependent SIR2; Provisional
Probab=100.00 E-value=1.2e-36 Score=295.08 Aligned_cols=134 Identities=40% Similarity=0.798 Sum_probs=119.0
Q ss_pred cccccHHHHHHHHHh--CCcEEEEcCCCCCccCCCCCcCCC-chhhhccccCCCCCCChhhhcchHhhhcCChHHHHHHH
Q psy6862 177 RHIGTFNDVIHLLKT--CSKIIVLTGAGVSVSCGIPDFRSR-DGIYSRLAVDFPNLPDPQAMFDINYFKQDPRPFFKFAR 253 (315)
Q Consensus 177 ~~~~tLe~l~elI~~--Ak~IVVlTGAGISaaSGIPDFRs~-~Gly~~l~~~f~~l~dP~emfd~~~F~~dP~~Fw~f~r 253 (315)
-...+|+.++++|++ +++|||+|||||||+|||||||++ +|+|.++.+ | ++.+|+++|+..+|+++|+.||+|++
T Consensus 12 ~~~~~l~~la~~I~~~~ak~IVvlTGAGISteSGIPdFRs~~~Glw~~~~~-~-~~~~pe~~fs~~~f~~~P~~f~~~~r 89 (349)
T PTZ00410 12 VGEPTFEGLARYIERNNVTKILVMVGAGISVAAGIPDFRSPHTGIYAKLGK-Y-NLNSPTDAFSLTLLREKPEVFYSIAR 89 (349)
T ss_pred cchHHHHHHHHHHHhcCCCCEEEEECcccccccCCCcccCcCCCcCccccc-c-CCCCHHHHcCHHHHHHCHHHHHHHHH
Confidence 345678999999998 679999999999999999999999 599998754 2 55689999999999999999999998
Q ss_pred HH--cCCCCCCChHHHHHHHHHHcCCcceeeecCccchHhhhCC--CCeeEcCcccc--ccCcCCC
Q psy6862 254 EI--YPGQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGI--ENVIECHDWVG--VCRRPLN 313 (315)
Q Consensus 254 ~i--~~~~~~Pn~~H~aLa~Le~~Gkl~~VITQNIDgLhqkAG~--~kVIElHGSl~--qC~~PC~ 313 (315)
++ ++..++||++|++|+.|+++|++.+||||||||||++||+ ++|+|+||++. +|.. |.
T Consensus 90 ~~~~~~~~a~Pn~aH~aLa~Le~~G~l~~vITQNIDgLh~rAG~~~~~ViElHGsl~~~~C~~-C~ 154 (349)
T PTZ00410 90 EMDLWPGHFQPTAVHHFIRLLADEGRLLRCCTQNIDGLERAAGVPPSLLVEAHGSFSAASCIE-CH 154 (349)
T ss_pred HhhcccCcCCCCHHHHHHHHHHhcCCcceEEecchhhhHhhcCCCcccEEEeccCCCeeEeCC-CC
Confidence 85 3346899999999999999999999999999999999998 48999999997 5765 64
No 5
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=1.6e-36 Score=278.50 Aligned_cols=124 Identities=37% Similarity=0.604 Sum_probs=114.0
Q ss_pred cHHHHHHHHHhCCcEEEEcCCCCCccCCCCCcCCCchhhhccccCCCCCCChhhhcchHhhhcCChHHHHHHHHHc--CC
Q psy6862 181 TFNDVIHLLKTCSKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFKQDPRPFFKFAREIY--PG 258 (315)
Q Consensus 181 tLe~l~elI~~Ak~IVVlTGAGISaaSGIPDFRs~~Gly~~l~~~f~~l~dP~emfd~~~F~~dP~~Fw~f~r~i~--~~ 258 (315)
++++++++|++|++|||+||||||++|||||||+.+|+|+++ +++++++..+|+.+|+.||+|++.+. ..
T Consensus 2 ~l~~l~~~i~~~~~ivi~tGAGiS~~sGip~FR~~~gl~~~~--------~~~~~~~~~~~~~~p~~~w~f~~~~~~~~~ 73 (242)
T PRK00481 2 RIEELAEILDKAKRIVVLTGAGISAESGIPDFRSANGLWEEH--------RPEDVASPEGFARDPELVWKFYNERRRQLL 73 (242)
T ss_pred hHHHHHHHHHhCCCEEEEeCCccccccCCCCccCCCcCccCC--------CHHHhccHHHHhhCHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999999863 68899999999999999999998753 34
Q ss_pred CCCCChHHHHHHHHHHcCCcceeeecCccchHhhhCCCCeeEcCcccc--ccCcCCC
Q psy6862 259 QFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHDWVG--VCRRPLN 313 (315)
Q Consensus 259 ~~~Pn~~H~aLa~Le~~Gkl~~VITQNIDgLhqkAG~~kVIElHGSl~--qC~~PC~ 313 (315)
+++||++|++|++|++.|++++||||||||||++||.++|+|+||++. +|.. |.
T Consensus 74 ~~~Pn~~H~~L~~L~~~~~~~~viTqNiD~L~~~aG~~~v~elHG~~~~~~C~~-C~ 129 (242)
T PRK00481 74 DAKPNAAHRALAELEKLGKLVTVITQNIDGLHERAGSKNVIELHGSLLRARCTK-CG 129 (242)
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEEEeccchhHHHcCCCceeeccCCcCceeeCC-CC
Confidence 789999999999999999999999999999999999999999999997 6765 53
No 6
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=100.00 E-value=1.6e-36 Score=276.94 Aligned_cols=122 Identities=35% Similarity=0.647 Sum_probs=110.4
Q ss_pred HHHHHHhCCcEEEEcCCCCCccCCCCCcCCCchhhhccccCCCCCCChhhhcchHhhhcCChHHHHHHHHHc-CCCCCCC
Q psy6862 185 VIHLLKTCSKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFKQDPRPFFKFAREIY-PGQFKPS 263 (315)
Q Consensus 185 l~elI~~Ak~IVVlTGAGISaaSGIPDFRs~~Gly~~l~~~f~~l~dP~emfd~~~F~~dP~~Fw~f~r~i~-~~~~~Pn 263 (315)
++++|++|++|||+||||||++|||||||+++|+|++.. . .+|+++++.++|..+|+.||+|+++.. ..+++||
T Consensus 1 ~~~~i~~a~~ivv~tGAGiS~~sGIpdfR~~~G~w~~~~-~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~Pn 75 (225)
T cd01411 1 LQHILKNAKRIVFFTGAGVSTASGIPDYRSKNGLYNEIY-K----YSPEYLLSHDFLEREPEKFYQFVKENLYFPDAKPN 75 (225)
T ss_pred ChHHHhhCCCEEEEECCccccccCCCCccCCCcCccCcC-C----CChHHeecHHHHHHCHHHHHHHHHHHhhCCCCCCC
Confidence 367899999999999999999999999999999999864 2 268999999999999999999998754 3578999
Q ss_pred hHHHHHHHHHHcCCcceeeecCccchHhhhCCCCeeEcCcccc--ccCcCCC
Q psy6862 264 PCHRFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHDWVG--VCRRPLN 313 (315)
Q Consensus 264 ~~H~aLa~Le~~Gkl~~VITQNIDgLhqkAG~~kVIElHGSl~--qC~~PC~ 313 (315)
.+|++|++|++.| +++||||||||||++||.++|+|+||++. +|.. |.
T Consensus 76 ~~H~~La~L~~~~-~~~viTQNvD~Lh~~aG~~~v~elHG~~~~~~C~~-C~ 125 (225)
T cd01411 76 IIHQKMAELEKMG-LKAVITQNIDGLHQKAGSKNVVEFHGSLYRIYCTV-CG 125 (225)
T ss_pred HHHHHHHHHHHcC-CcEEEEeccchhhhhcCCCcEEEeCCCcCeeEeCC-CC
Confidence 9999999999987 89999999999999999999999999996 6776 64
No 7
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=100.00 E-value=2.3e-36 Score=277.67 Aligned_cols=118 Identities=60% Similarity=1.066 Sum_probs=106.7
Q ss_pred CcEEEEcCCCCCccCCCCCcCCCc-hhhhccccCCCCCCChhhhcchHhhhcCChHHHHHHHHHcCCCCCCChHHHHHHH
Q psy6862 193 SKIIVLTGAGVSVSCGIPDFRSRD-GIYSRLAVDFPNLPDPQAMFDINYFKQDPRPFFKFAREIYPGQFKPSPCHRFIKM 271 (315)
Q Consensus 193 k~IVVlTGAGISaaSGIPDFRs~~-Gly~~l~~~f~~l~dP~emfd~~~F~~dP~~Fw~f~r~i~~~~~~Pn~~H~aLa~ 271 (315)
|+|||+|||||||+||||||||++ |+|.++.+. .+.+|++++++++|++||+.||+|+++++...++||.+|++|++
T Consensus 1 k~ivvlTGAGiS~~SGIPdfR~~~~G~w~~~~~~--~~~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~a~Pn~~H~~la~ 78 (235)
T cd01408 1 KKIVVLVGAGISTSAGIPDFRSPGTGLYANLARY--NLPYPEAMFDISYFRKNPRPFYALAKELYPGQFKPSVAHYFIKL 78 (235)
T ss_pred CcEEEEeCCccccccCCCCcCCCCCCcchhhhhc--cCCCHHHhcCHHHHHHChHHHHHHHHHHhcCcCCCCHHHHHHHH
Confidence 579999999999999999999999 999987542 33478999999999999999999999876557999999999999
Q ss_pred HHHcCCcceeeecCccchHhhhCCC--CeeEcCcccc--ccCcCCC
Q psy6862 272 LERHGKLLRNYSQNIDTLEQVAGIE--NVIECHDWVG--VCRRPLN 313 (315)
Q Consensus 272 Le~~Gkl~~VITQNIDgLhqkAG~~--kVIElHGSl~--qC~~PC~ 313 (315)
|+++|++++||||||||||+|||++ +|+|+||++. +|.. |+
T Consensus 79 L~~~g~~~~viTQNiD~Lh~raG~~~~~V~elHG~l~~~~C~~-C~ 123 (235)
T cd01408 79 LEDKGLLLRNYTQNIDTLERVAGVPDDRIIEAHGSFATAHCIK-CK 123 (235)
T ss_pred HHhcCCceEEEEeccchHHHHcCCCccCEEEeCcCCCcccccc-CC
Confidence 9999999999999999999999985 9999999997 5765 54
No 8
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=2.5e-36 Score=278.96 Aligned_cols=121 Identities=40% Similarity=0.688 Sum_probs=110.2
Q ss_pred HHHHHHHHhCCcEEEEcCCCCCccCCCCCcCCCchhhhccccCCCCCCChhhhcchHhhhcCChHHHHHHHHHc--CCCC
Q psy6862 183 NDVIHLLKTCSKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFKQDPRPFFKFAREIY--PGQF 260 (315)
Q Consensus 183 e~l~elI~~Ak~IVVlTGAGISaaSGIPDFRs~~Gly~~l~~~f~~l~dP~emfd~~~F~~dP~~Fw~f~r~i~--~~~~ 260 (315)
+.++++|++|++|||+||||||++|||||||+++|+|++. |+++++..+|..+|+.||+|+++.+ ..++
T Consensus 2 ~~l~~~l~~a~~ivv~tGAGiS~~SGIp~fR~~~gl~~~~---------~~~~~~~~~~~~~p~~~w~~~~~~~~~~~~~ 72 (244)
T PRK14138 2 KEFLELLNESRLTVTLTGAGISTPSGIPDFRGPQGIYKKY---------PQNVFDIDFFYSHPEEFYRFAKEGIFPMLEA 72 (244)
T ss_pred HHHHHHHHhCCCEEEEECcccchhhCCCCcCCCCCCccCC---------cccccCHHHHHhCHHHHHHHHHHhhcccccC
Confidence 5688999999999999999999999999999999999863 4678999999999999999998754 2478
Q ss_pred CCChHHHHHHHHHHcCCcceeeecCccchHhhhCCCCeeEcCcccc--ccCcCCC
Q psy6862 261 KPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHDWVG--VCRRPLN 313 (315)
Q Consensus 261 ~Pn~~H~aLa~Le~~Gkl~~VITQNIDgLhqkAG~~kVIElHGSl~--qC~~PC~ 313 (315)
+||.+|++|++|+++|++.+||||||||||++||.++|+|+|||+. +|.+ |.
T Consensus 73 ~Pn~~H~ala~L~~~g~~~~viTQNIDgLh~~aG~~~VielHG~~~~~~C~~-C~ 126 (244)
T PRK14138 73 KPNLAHVLLAKLEEKGLIEAVITQNIDRLHQKAGSKKVIELHGNVEEYYCVR-CG 126 (244)
T ss_pred CCCHHHHHHHHHHHcCCceEEEeecccChhhHcCCCeEEEccCCcCeeEECC-CC
Confidence 9999999999999999999999999999999999999999999997 6775 54
No 9
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=100.00 E-value=3.7e-36 Score=273.76 Aligned_cols=116 Identities=41% Similarity=0.717 Sum_probs=106.1
Q ss_pred HHhCCcEEEEcCCCCCccCCCCCcCCCchhhhccccCCCCCCChhhhcchHhhhcCChHHHHHHHHHcC--CCCCCChHH
Q psy6862 189 LKTCSKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFKQDPRPFFKFAREIYP--GQFKPSPCH 266 (315)
Q Consensus 189 I~~Ak~IVVlTGAGISaaSGIPDFRs~~Gly~~l~~~f~~l~dP~emfd~~~F~~dP~~Fw~f~r~i~~--~~~~Pn~~H 266 (315)
|++|++|||+||||||++|||||||+.+|+|++. +++++++..+|..+|+.||+|+++++. ..++||++|
T Consensus 1 l~~a~~ivv~tGAGiS~~sGIp~FR~~~glw~~~--------~~~~~~~~~~f~~~p~~~w~~~~~~~~~~~~a~Pn~~H 72 (222)
T cd01413 1 LTKSRKTVVLTGAGISTESGIPDFRSPDGLWKKY--------DPEEVASIDYFYRNPEEFWRFYKEIILGLLEAQPNKAH 72 (222)
T ss_pred CCCCCeEEEEECchhhhhhCCCCccCcCCCcCCC--------CHHHhccHHHHhHCHHHHHHHHHHHhcccCCCCCCHHH
Confidence 4679999999999999999999999999999863 588999999999999999999988653 478999999
Q ss_pred HHHHHHHHcCCcceeeecCccchHhhhCCCCeeEcCcccc--ccCcCCC
Q psy6862 267 RFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHDWVG--VCRRPLN 313 (315)
Q Consensus 267 ~aLa~Le~~Gkl~~VITQNIDgLhqkAG~~kVIElHGSl~--qC~~PC~ 313 (315)
++|++|+++|++++||||||||||+|||.++|+|+||++. +|.. |.
T Consensus 73 ~~La~L~~~~~~~~viTQNiDgLh~~AG~~~v~elHG~l~~~~C~~-C~ 120 (222)
T cd01413 73 YFLAELEKQGIIKAIITQNIDGLHQRAGSKNVIELHGTLQTAYCVN-CG 120 (222)
T ss_pred HHHHHHHhcCCCeEEEEeccchhhHHcCCCcEEEccCCcCcceECC-CC
Confidence 9999999999999999999999999999999999999997 5765 53
No 10
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=100.00 E-value=2.3e-35 Score=275.10 Aligned_cols=113 Identities=34% Similarity=0.578 Sum_probs=99.7
Q ss_pred HHHHHHhCCcEEEEcCCCCCccCCCCCcCCCchhhhccccCCCCCCChhhhcchHhhhcCChHHHHHHHHHc-----CCC
Q psy6862 185 VIHLLKTCSKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFKQDPRPFFKFAREIY-----PGQ 259 (315)
Q Consensus 185 l~elI~~Ak~IVVlTGAGISaaSGIPDFRs~~Gly~~l~~~f~~l~dP~emfd~~~F~~dP~~Fw~f~r~i~-----~~~ 259 (315)
|+++|++|++|||+||||||++||||||||++|+|++. | +| ++...|..||+.||.||...+ ...
T Consensus 1 ~~~~l~~sk~ivvlTGAGiSt~SGIPdFR~~~Glw~~~---~----~~---~~~~~f~~~p~~~~~~~~~~~~~~~~~~~ 70 (260)
T cd01409 1 LQDFVARSRRLLVLTGAGISTESGIPDYRSEGGLYSRT---F----RP---MTHQEFMRSPAARQRYWARSFVGWPRFSA 70 (260)
T ss_pred ChHHHhcCCCEEEEeCceeehhhCCCCCCCcCCcccCC---C----CC---CCHHHHHhCcHHHHHHHHHHHhhhhhhcc
Confidence 46789999999999999999999999999999999884 1 22 356889999998888775421 246
Q ss_pred CCCChHHHHHHHHHHcCCcceeeecCccchHhhhCCCCeeEcCccccc
Q psy6862 260 FKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHDWVGV 307 (315)
Q Consensus 260 ~~Pn~~H~aLa~Le~~Gkl~~VITQNIDgLhqkAG~~kVIElHGSl~q 307 (315)
++||.+|++|++|+++|++++||||||||||++||+++|+|+|||+++
T Consensus 71 ~~Pn~~H~~la~L~~~g~~~~viTQNIDgLh~~aG~~~vielHG~~~~ 118 (260)
T cd01409 71 AQPNAAHRALAALEAAGRLHGLITQNVDGLHTKAGSRNVVELHGSLHR 118 (260)
T ss_pred CCCCHHHHHHHHHHHcCCCeeEEeeccchhHHHcCCCCEEEEeeecCE
Confidence 899999999999999999999999999999999999999999999984
No 11
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=100.00 E-value=8.1e-35 Score=263.19 Aligned_cols=112 Identities=46% Similarity=0.757 Sum_probs=100.8
Q ss_pred CcEEEEcCCCCCccCCCCCcCCCchhhhccccCCCCCCChhhh-cchHhhhcCChHHHHHHHHHc-CCCCCCChHHHHHH
Q psy6862 193 SKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAM-FDINYFKQDPRPFFKFAREIY-PGQFKPSPCHRFIK 270 (315)
Q Consensus 193 k~IVVlTGAGISaaSGIPDFRs~~Gly~~l~~~f~~l~dP~em-fd~~~F~~dP~~Fw~f~r~i~-~~~~~Pn~~H~aLa 270 (315)
++|||+||||||++|||||||+++|+|+++. +..+ |+..+|+.+|+.||+|+++++ ...++||++|++|+
T Consensus 1 k~ivv~tGAGiS~~sGIpdfR~~~G~~~~~~--------~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~Pn~~H~~L~ 72 (218)
T cd01407 1 KRIVVLTGAGISTESGIPDFRSPGGLWARLD--------PEELAFSPEAFRRDPELFWGFYRERRYPLNAQPNPAHRALA 72 (218)
T ss_pred CcEEEEeCCccccccCCCcccCCCCccccCC--------hhhccCCHHHHHHCHHHHHHHHHHhhhhccCCCCHHHHHHH
Confidence 5899999999999999999999999999863 3334 589999999999999998754 45789999999999
Q ss_pred HHHHcCCcceeeecCccchHhhhCCCCeeEcCcccc--ccCcCCC
Q psy6862 271 MLERHGKLLRNYSQNIDTLEQVAGIENVIECHDWVG--VCRRPLN 313 (315)
Q Consensus 271 ~Le~~Gkl~~VITQNIDgLhqkAG~~kVIElHGSl~--qC~~PC~ 313 (315)
+|+++|++++||||||||||++||+++|+|+||++. +|. .|+
T Consensus 73 ~L~~~~~~~~viTQNiDgL~~~aG~~~v~elHG~~~~~~C~-~C~ 116 (218)
T cd01407 73 ELERKGKLKRVITQNVDGLHQRAGSPKVIELHGSLFRVRCT-KCG 116 (218)
T ss_pred HHHhcCCCeeEEEeccchhHHHcCCCCEEECcCCcCcceeC-CCc
Confidence 999999999999999999999999999999999997 677 565
No 12
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=1.9e-34 Score=271.45 Aligned_cols=123 Identities=28% Similarity=0.468 Sum_probs=102.9
Q ss_pred cccHHHHHHHHHhCCcEEEEcCCCCCccCCCCCcCCCchhhhccccCCCCCCChhhhcchHhhhcCChHHHHHHH---HH
Q psy6862 179 IGTFNDVIHLLKTCSKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFKQDPRPFFKFAR---EI 255 (315)
Q Consensus 179 ~~tLe~l~elI~~Ak~IVVlTGAGISaaSGIPDFRs~~Gly~~l~~~f~~l~dP~emfd~~~F~~dP~~Fw~f~r---~i 255 (315)
...|+.++++|++|++|||+||||||++||||||||++|+|.+. +|. +...|..+|+..|.||+ ..
T Consensus 6 ~~~l~~l~~~i~~~~~ivvlTGAGiS~~SGIPdFR~~~G~w~~~--------~~~---~~~~~~~~~~~~~~~~~~~~~~ 74 (285)
T PRK05333 6 PAALDALQDFVERHPRLFVLTGAGISTDSGIPDYRDRNGQWKRS--------PPI---TYQAFMGSDAARRRYWARSMVG 74 (285)
T ss_pred HHHHHHHHHHHHhCCcEEEEeCCccccccCCCcccCCCCccccC--------Ccc---cHHHHhcCchhhHHHHHHHHhh
Confidence 35688899999999999999999999999999999999999874 222 33456666665454443 22
Q ss_pred c--CCCCCCChHHHHHHHHHHcCCcceeeecCccchHhhhCCCCeeEcCcccc--ccCcCC
Q psy6862 256 Y--PGQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHDWVG--VCRRPL 312 (315)
Q Consensus 256 ~--~~~~~Pn~~H~aLa~Le~~Gkl~~VITQNIDgLhqkAG~~kVIElHGSl~--qC~~PC 312 (315)
+ ...++||++|++|++|+++||+++||||||||||++||.++|+|+|||+. +|...|
T Consensus 75 ~~~~~~~~Pn~~H~aLa~L~~~g~~~~viTQNIDgLh~rAG~~~ViElHG~~~~~~C~~C~ 135 (285)
T PRK05333 75 WPVFGRAQPNAAHHALARLGAAGRIERLVTQNVDGLHQRAGSRDVIELHGRLDGVRCMGCG 135 (285)
T ss_pred chhcccCCCCHHHHHHHHHHHcCCcccEEecccchhHHHcCCCCEEeecCCcCEEEECCCC
Confidence 2 24689999999999999999999999999999999999999999999996 788744
No 13
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=100.00 E-value=2e-34 Score=260.97 Aligned_cols=113 Identities=35% Similarity=0.556 Sum_probs=101.7
Q ss_pred CcEEEEcCCCCCccCCCCCcCCCchhhhccccCCCCCCChhhhcchHhhhcCChHHHHHHHHHc--CCCCCCChHHHHHH
Q psy6862 193 SKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFKQDPRPFFKFAREIY--PGQFKPSPCHRFIK 270 (315)
Q Consensus 193 k~IVVlTGAGISaaSGIPDFRs~~Gly~~l~~~f~~l~dP~emfd~~~F~~dP~~Fw~f~r~i~--~~~~~Pn~~H~aLa 270 (315)
++|||+||||||++|||||||+.+|+|+++ ++.++++..+|..+|+.+|+|+.... ...++||.+|++|+
T Consensus 1 ~~ivi~tGAGiS~~sGIp~fR~~~g~~~~~--------~~~~~~~~~~f~~~p~~~w~f~~~~~~~~~~~~Pn~~H~~L~ 72 (224)
T cd01412 1 RRVVVLTGAGISAESGIPTFRDADGLWARF--------DPEELATPEAFARDPELVWEFYNWRRRKALRAQPNPAHLALA 72 (224)
T ss_pred CcEEEEeCCccchhhCCCCccCcCCCcCCC--------ChhhcCCHHHHHHCHHHHHHHHHHHHHHccccCCCHHHHHHH
Confidence 579999999999999999999999999874 46789999999999999999987642 34789999999999
Q ss_pred HHHHcCCcceeeecCccchHhhhCCCCeeEcCcccc--ccCcCCCC
Q psy6862 271 MLERHGKLLRNYSQNIDTLEQVAGIENVIECHDWVG--VCRRPLNQ 314 (315)
Q Consensus 271 ~Le~~Gkl~~VITQNIDgLhqkAG~~kVIElHGSl~--qC~~PC~~ 314 (315)
+|++++++++||||||||||++||+++|+|+||++. +| ..|+.
T Consensus 73 ~L~~~~~~~~viTqNiDgL~~~aG~~~v~e~HG~~~~~~C-~~C~~ 117 (224)
T cd01412 73 ELERRLPNVLLITQNVDGLHERAGSRNVIELHGSLFRVRC-SSCGY 117 (224)
T ss_pred HHHhcCCCeEEEEccchHhhHHhCCCceEeeCCCcCcccc-CCCCC
Confidence 999999899999999999999999999999999997 68 35753
No 14
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=2.4e-34 Score=266.34 Aligned_cols=113 Identities=30% Similarity=0.496 Sum_probs=101.5
Q ss_pred HhCCcEEEEcCCCCCccCCCCCcCCCchhhhccccCCCCCCChhhhcchHhhhcCChHHHHHHHHH----cCCCCCCChH
Q psy6862 190 KTCSKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFKQDPRPFFKFAREI----YPGQFKPSPC 265 (315)
Q Consensus 190 ~~Ak~IVVlTGAGISaaSGIPDFRs~~Gly~~l~~~f~~l~dP~emfd~~~F~~dP~~Fw~f~r~i----~~~~~~Pn~~ 265 (315)
++|++|||+||||||++|||||||+.+|+|+++ +++++++..+|..+|+.+|+||..+ ....++||.+
T Consensus 2 ~~~~~ivvlTGAGiS~~SGIPdFR~~~Glw~~~--------~~~~~~~~~~f~~~p~~~~~f~~~~~~~~~~~~~~Pn~~ 73 (242)
T PTZ00408 2 KACRCITILTGAGISAESGISTFRDGNGLWENH--------RVEDVATPDAFLRNPALVQRFYNERRRALLSSSVKPNKA 73 (242)
T ss_pred CCCCeEEEEeCcchhhhhCCCcccCCCCCCCCC--------ChhhcCCHHHHHhCHHHHHHHHHHHHHHhccCCCCCCHH
Confidence 468999999999999999999999999999764 5778899999999999999998653 2357899999
Q ss_pred HHHHHHHHHc--CCcceeeecCccchHhhhCCCCeeEcCcccc--ccCc
Q psy6862 266 HRFIKMLERH--GKLLRNYSQNIDTLEQVAGIENVIECHDWVG--VCRR 310 (315)
Q Consensus 266 H~aLa~Le~~--Gkl~~VITQNIDgLhqkAG~~kVIElHGSl~--qC~~ 310 (315)
|++|++|++. |++++||||||||||++||.++|+|+||+++ +|.+
T Consensus 74 H~~L~~Le~~~~~~~~~iiTQNiDgLh~~AG~~~v~elHG~~~~~~C~~ 122 (242)
T PTZ00408 74 HFALAKLEREYRGGKVVVVTQNVDNLHERAGSTHVLHMHGELLKVRCTA 122 (242)
T ss_pred HHHHHHHHHhhcCCcEEEEeecccchhhHcCCCcEEEecCccceEEECC
Confidence 9999999986 8889999999999999999999999999997 5665
No 15
>KOG2682|consensus
Probab=99.97 E-value=4.2e-33 Score=258.68 Aligned_cols=131 Identities=47% Similarity=0.924 Sum_probs=121.3
Q ss_pred cccHHHHHHHHHh--CCcEEEEcCCCCCccCCCCCcCCC-chhhhccccCCCCCCChhhhcchHhhhcCChHHHHHHHHH
Q psy6862 179 IGTFNDVIHLLKT--CSKIIVLTGAGVSVSCGIPDFRSR-DGIYSRLAVDFPNLPDPQAMFDINYFKQDPRPFFKFAREI 255 (315)
Q Consensus 179 ~~tLe~l~elI~~--Ak~IVVlTGAGISaaSGIPDFRs~-~Gly~~l~~~f~~l~dP~emfd~~~F~~dP~~Fw~f~r~i 255 (315)
.-++++++++++. +++|+|+.||||||+||||||||+ .|+|+++++ ..++.|+++|+..||+.||+.||..++++
T Consensus 21 ~l~lekvA~~mks~~~~rVi~mVGAGISTsaGIPDFRSP~tGlY~NLqr--~~LPYpEAiFel~yF~~nP~PF~tLAkEL 98 (314)
T KOG2682|consen 21 ELTLEKVARLMKSERCRRVIVMVGAGISTSAGIPDFRSPGTGLYDNLQR--YHLPYPEAIFELSYFKKNPEPFFTLAKEL 98 (314)
T ss_pred hhhHHHHHHHHhhCCcceEEEEecCccccccCCCCCCCCCchhhhhHHH--hcCCChhhhhccHHhhcCCchHHHHHHHh
Confidence 3478999999986 679999999999999999999998 599999975 37899999999999999999999999999
Q ss_pred cCCCCCCChHHHHHHHHHHcCCcceeeecCccchHhhhCC--CCeeEcCccccccCcC
Q psy6862 256 YPGQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGI--ENVIECHDWVGVCRRP 311 (315)
Q Consensus 256 ~~~~~~Pn~~H~aLa~Le~~Gkl~~VITQNIDgLhqkAG~--~kVIElHGSl~qC~~P 311 (315)
|+++++||.+|++|+.|.++|.++++||||||+|++.||. +.++|.||+|+.|+|-
T Consensus 99 yPgnfkPt~~HYflrLl~DK~lL~r~YTQNIDtLER~aGv~d~~lvEAHGtFa~s~Ci 156 (314)
T KOG2682|consen 99 YPGNFKPTITHYFLRLLHDKGLLLRCYTQNIDTLERIAGVPDEDLVEAHGTFATSHCI 156 (314)
T ss_pred CCCCcCchhHHHHHHHHccccHHHHHHhccchHHHHhcCCCHHHHHHhccceeeeeeh
Confidence 9999999999999999999999999999999999999999 5899999999865543
No 16
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=99.97 E-value=3.7e-32 Score=245.68 Aligned_cols=98 Identities=37% Similarity=0.567 Sum_probs=86.9
Q ss_pred CcEEEEcCCCCCccCCCCCcCCCchhhhccccCCCCCCChhhhcchHhhhcCChHHHHHHHHHcCCCCCCChHHHHHHHH
Q psy6862 193 SKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFKQDPRPFFKFAREIYPGQFKPSPCHRFIKML 272 (315)
Q Consensus 193 k~IVVlTGAGISaaSGIPDFRs~~Gly~~l~~~f~~l~dP~emfd~~~F~~dP~~Fw~f~r~i~~~~~~Pn~~H~aLa~L 272 (315)
|+|||+||||||++||||||||++|+|++.. + |..+|..+|.|+ .++||.+|++|++|
T Consensus 1 k~ivvltGAGiS~~SGIP~fR~~~Glw~~~~--------~--------~~~~~~~~~~~~------~~~Pn~~H~~La~l 58 (206)
T cd01410 1 KHLVVFTGAGISTSAGIPDFRGPNGVWTLLP--------E--------DKGRRRFSWRFR------RAEPTLTHMALVEL 58 (206)
T ss_pred CcEEEEeCCcccHhhCCCcccCcCCCcccCC--------c--------cccChHHHhhhh------cCCCCHHHHHHHHH
Confidence 5899999999999999999999999998752 1 456788888875 37999999999999
Q ss_pred HHcCCcceeeecCccchHhhhCC--CCeeEcCcccc--ccCcCCC
Q psy6862 273 ERHGKLLRNYSQNIDTLEQVAGI--ENVIECHDWVG--VCRRPLN 313 (315)
Q Consensus 273 e~~Gkl~~VITQNIDgLhqkAG~--~kVIElHGSl~--qC~~PC~ 313 (315)
+++|++++||||||||||++||+ ++|+|+||+++ +|.. |+
T Consensus 59 ~~~g~~~~viTQNID~Lh~~AG~~~~~vielHG~~~~~~C~~-C~ 102 (206)
T cd01410 59 ERAGLLKFVISQNVDGLHLRSGLPREKLSELHGNMFIEVCKS-CG 102 (206)
T ss_pred HHCCCCceEEecCccchHhHcCcCcccEEEecCCcCcccCCC-CC
Confidence 99999999999999999999998 58999999997 5776 64
No 17
>PF02146 SIR2: Sir2 family; InterPro: IPR003000 These sequences represent the Sirtuin (Sir2-related) family of NAD+-dependent deacetylases. This family of enzymes is broadly conserved from bacteria to humans. In yeast, Sir2 proteins form complexes with other proteins to silence chromatin by accessing histones and deacetylating them. Sir2 proteins have been proposed to play a role in silencing, chromosome stability and ageing []. The bacterial enzyme CobB, an homologue of Sir2, is a phosphoribosyltransferase []. An in vitro ADP ribosyltransferase activity has also been associated with human members of this family []. Sir2-like enzymes employ NAD+ as a cosubstrate in deacetylation reactions [] and catalyse a reaction in which the cleavage of NAD(+)and histone and/or protein deacetylation are coupled to the formation of O-acetyl-ADP-ribose, a novel metabolite. The dependence of the reaction on both NAD(+) and the generation of this potential second messenger offers new clues to understanding the function and regulation of nuclear, cytoplasmic and mitochondrial Sir2-like enzymes []. Silent Information Regulator protein of Saccharomyces cerevisiae (Sir2) is one of several factors critical for silencing at least three loci. Among them, it is unique because it silences the rDNA as well as the mating type loci and telomeres []. Sir2 interacts in a complex with itself and with Sir3 and Sir4, two proteins that are able to interact with nucleosomes. In addition Sir2 also interacts with ubiquitination factors and/or complexes []. Homologues of Sir2 share a core domain including the GAG and NID motifs and a putative C4 Zinc finger. The regions containing these three conserved motifs are individually essential for Sir2 silencing function, as are the four cysteins []. In addition, the conserved residues HG next to the putative Zn finger have been shown to be essential for the ADP ribosyltransferase activity []. ; GO: 0008270 zinc ion binding, 0070403 NAD+ binding, 0006476 protein deacetylation; PDB: 1S5P_A 3PKI_E 3PKJ_F 3K35_A 1ICI_A 1M2K_A 1M2G_A 1M2N_B 1M2H_A 1M2J_A ....
Probab=99.97 E-value=4.3e-32 Score=237.70 Aligned_cols=105 Identities=40% Similarity=0.655 Sum_probs=83.8
Q ss_pred CCCCCccCCCCCcCC-CchhhhccccCCCCCCChhhhcchHhhhcCChHHHH-HHHH---HcCCCCCCChHHHHHHHHHH
Q psy6862 200 GAGVSVSCGIPDFRS-RDGIYSRLAVDFPNLPDPQAMFDINYFKQDPRPFFK-FARE---IYPGQFKPSPCHRFIKMLER 274 (315)
Q Consensus 200 GAGISaaSGIPDFRs-~~Gly~~l~~~f~~l~dP~emfd~~~F~~dP~~Fw~-f~r~---i~~~~~~Pn~~H~aLa~Le~ 274 (315)
||||||+|||||||+ .+|+|+++. +..+++..+|..+|..+|+ |++. .....++||.+|++|++|++
T Consensus 1 GAGiS~~SGIpdfR~~~~Glw~~~~--------~~~l~~~~~~~~~~~~~~~~f~~~~~~~~~~~a~Pn~~H~~La~L~~ 72 (178)
T PF02146_consen 1 GAGISTASGIPDFRSDPDGLWTKYK--------PEELATPEAFFSDPEFVWEKFYRFRRKVISKDAEPNPGHRALAELEK 72 (178)
T ss_dssp -GGGGGGGT--SSSSTTSCHHHHCH--------HHHHSSHHHHHHHHHHHHHHHHHHHHHHCTCTS---HHHHHHHHHHH
T ss_pred CCccchhhCCCccccCCCCcceeee--------ccccccccccccccchhhhHHHHHhhhhccccCCCChhHHHHHHHHH
Confidence 899999999999999 999999863 4557777888888887776 6543 33348999999999999999
Q ss_pred cCCcceeeecCccchHhhhCCCCeeEcCcccc--ccCcCCC
Q psy6862 275 HGKLLRNYSQNIDTLEQVAGIENVIECHDWVG--VCRRPLN 313 (315)
Q Consensus 275 ~Gkl~~VITQNIDgLhqkAG~~kVIElHGSl~--qC~~PC~ 313 (315)
+|++++||||||||||++||.++|+|+|||++ +|.. |.
T Consensus 73 ~g~~~~viTQNIDgLh~~AG~~~vielHG~l~~~~C~~-C~ 112 (178)
T PF02146_consen 73 KGKLKRVITQNIDGLHQKAGSPKVIELHGSLFRLRCSK-CG 112 (178)
T ss_dssp TTSEEEEEES-SSSHHHHTTESCEEETTEEEEEEEETT-TS
T ss_pred hhhhccceecccchhhhcccchhhHHHHhhhceeeecC-CC
Confidence 99999999999999999999999999999997 5763 54
No 18
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic
Probab=99.97 E-value=3.9e-31 Score=236.46 Aligned_cols=110 Identities=42% Similarity=0.742 Sum_probs=98.6
Q ss_pred CcEEEEcCCCCCccCCCCCcCCCc-hhhhccccCCCCCCChhhh-cchHhhhcCChHHHHHHHHHc--CCCCCCChHHHH
Q psy6862 193 SKIIVLTGAGVSVSCGIPDFRSRD-GIYSRLAVDFPNLPDPQAM-FDINYFKQDPRPFFKFAREIY--PGQFKPSPCHRF 268 (315)
Q Consensus 193 k~IVVlTGAGISaaSGIPDFRs~~-Gly~~l~~~f~~l~dP~em-fd~~~F~~dP~~Fw~f~r~i~--~~~~~Pn~~H~a 268 (315)
++|||+||||||++|||||||+.+ |+|+++... .. ++...|+.+|+.||.|+++++ ...++||++|++
T Consensus 1 k~iv~~tGAGiS~~sGiP~fr~~~~g~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~H~~ 72 (222)
T cd00296 1 KRVVVFTGAGISTESGIPDFRGLGTGLWTRLDPE--------ELAFSPEAFRRDPELFWLFYKERRYTPLDAKPNPAHRA 72 (222)
T ss_pred CCEEEEeCCccccccCCCCccccccchhhcCCcc--------cccCCHHHHHHCHHHHHHHHHHHHhhhCcCCCCHHHHH
Confidence 589999999999999999999998 999987432 11 688999999999999998864 357899999999
Q ss_pred HHHHHHcCCcceeeecCccchHhhhCCC--CeeEcCcccc--ccCc
Q psy6862 269 IKMLERHGKLLRNYSQNIDTLEQVAGIE--NVIECHDWVG--VCRR 310 (315)
Q Consensus 269 La~Le~~Gkl~~VITQNIDgLhqkAG~~--kVIElHGSl~--qC~~ 310 (315)
|++|+++|++.+|||||||+||++||.+ +|+++||++. +|..
T Consensus 73 l~~l~~~~~~~~iiTqNiD~L~~~ag~~~~~v~~lHG~~~~~~C~~ 118 (222)
T cd00296 73 LAELERKGKLKRIITQNVDGLHERAGSRRNRVIELHGSLDRVRCTS 118 (222)
T ss_pred HHHHHHcCCCceEEecChHHHHHHhCCCcCcEEEecCCCCccEECC
Confidence 9999999999999999999999999997 9999999997 5764
No 19
>KOG2683|consensus
Probab=99.94 E-value=8.3e-28 Score=223.23 Aligned_cols=121 Identities=31% Similarity=0.505 Sum_probs=101.6
Q ss_pred cccHHHHHHHHHhCCcEEEEcCCCCCccCCCCCcCCCc-hhhhccccCCCCCCChhhhcchHhhhcCChHHHHHHHHH--
Q psy6862 179 IGTFNDVIHLLKTCSKIIVLTGAGVSVSCGIPDFRSRD-GIYSRLAVDFPNLPDPQAMFDINYFKQDPRPFFKFAREI-- 255 (315)
Q Consensus 179 ~~tLe~l~elI~~Ak~IVVlTGAGISaaSGIPDFRs~~-Gly~~l~~~f~~l~dP~emfd~~~F~~dP~~Fw~f~r~i-- 255 (315)
+++|.++..+|..+++++|+||||||++||||||||++ |+|.+...+ | +.-.+|.+.++-....|+|++
T Consensus 32 e~~ikkl~~li~~~~rllvlTGAGISTEsGIPDYRS~~VGlYars~~k------P--I~hqdf~rSs~~RqRYWaRnf~g 103 (305)
T KOG2683|consen 32 EEDIKKLYRLIGTSDRLLVLTGAGISTESGIPDYRSEDVGLYARSAHK------P--IQHQDFVRSSRCRQRYWARNFVG 103 (305)
T ss_pred HHHHHHHHHHHccCCceEEEecCcccccCCCCcccCCCccceeecCCC------c--chHHHHhhhhHHHHHHHHHhhcC
Confidence 57899999999999999999999999999999999998 999986432 2 122334455554444555664
Q ss_pred c--CCCCCCChHHHHHHHHHHcCCcceeeecCccchHhhhCCCCeeEcCccccc
Q psy6862 256 Y--PGQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHDWVGV 307 (315)
Q Consensus 256 ~--~~~~~Pn~~H~aLa~Le~~Gkl~~VITQNIDgLhqkAG~~kVIElHGSl~q 307 (315)
| ...++||++|++|++||+.||+.++||||||+||.|||.+.|.|+||+.+|
T Consensus 104 WprFs~aqPn~~H~ALs~wE~~~r~~wliTQNVD~LH~kAGS~~~tElHG~~~~ 157 (305)
T KOG2683|consen 104 WPRFSAAQPNPAHYALSKWEKAGRFQWLITQNVDRLHTKAGSRMVTELHGSAYQ 157 (305)
T ss_pred cchhhhcCCCchhHHHHHHhhcCceEEEeeccchhhhhhccccceeeeccceEE
Confidence 2 246899999999999999999999999999999999999999999999885
No 20
>KOG1905|consensus
Probab=99.91 E-value=1.1e-25 Score=214.11 Aligned_cols=103 Identities=30% Similarity=0.482 Sum_probs=90.0
Q ss_pred ccHHHHHHHHHhCCcEEEEcCCCCCccCCCCCcCCCchhhhccccCCCCCCChhhhcchHhhhcCChHHHHHHHHHcCCC
Q psy6862 180 GTFNDVIHLLKTCSKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFKQDPRPFFKFAREIYPGQ 259 (315)
Q Consensus 180 ~tLe~l~elI~~Ak~IVVlTGAGISaaSGIPDFRs~~Gly~~l~~~f~~l~dP~emfd~~~F~~dP~~Fw~f~r~i~~~~ 259 (315)
...++++++|++|+.+||+||||||++||||||||++|+|...+++-. .|+. -...
T Consensus 43 ~kv~elA~li~~sk~lvv~tGAGISTaa~IPDfRGp~GVWTL~~kG~~-------~~~~-----------------df~~ 98 (353)
T KOG1905|consen 43 TKVEELAQLIQQSKHLVVYTGAGISTAAGIPDFRGPQGVWTLQQKGKD-------KFGV-----------------DFSE 98 (353)
T ss_pred HHHHHHHHHHhhCCcEEEEeCCccccccCCCCccCCCceeehhhcCcc-------ccCC-----------------chhh
Confidence 367889999999999999999999999999999999999998765321 1110 0236
Q ss_pred CCCChHHHHHHHHHHcCCcceeeecCccchHhhhCC--CCeeEcCcccc
Q psy6862 260 FKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGI--ENVIECHDWVG 306 (315)
Q Consensus 260 ~~Pn~~H~aLa~Le~~Gkl~~VITQNIDgLhqkAG~--~kVIElHGSl~ 306 (315)
+.|+.+|++|-+|++.|.+.+||||||||||.|+|+ +++.|+|||++
T Consensus 99 ArPt~THmai~~Lhr~gll~~viSQNvDGLhlrsGlPr~~LsElHGNmf 147 (353)
T KOG1905|consen 99 ARPTVTHMAIVALHRAGLLKHVISQNVDGLHLRSGLPREKLSELHGNMF 147 (353)
T ss_pred cCCcchHHHHHHHHHcchhhhhhhccccchhhccCCCHHHHHHHhcchH
Confidence 899999999999999999999999999999999999 58999999987
No 21
>cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.
Probab=99.18 E-value=4.9e-11 Score=108.78 Aligned_cols=113 Identities=27% Similarity=0.353 Sum_probs=70.7
Q ss_pred CcEEEEcCCCCCccCCCCCcCCC-chhhhccccCCCC-------CCChhhhcchHhhhc-CChHHHHH--H-HHHcCCCC
Q psy6862 193 SKIIVLTGAGVSVSCGIPDFRSR-DGIYSRLAVDFPN-------LPDPQAMFDINYFKQ-DPRPFFKF--A-REIYPGQF 260 (315)
Q Consensus 193 k~IVVlTGAGISaaSGIPDFRs~-~Gly~~l~~~f~~-------l~dP~emfd~~~F~~-dP~~Fw~f--~-r~i~~~~~ 260 (315)
.++|+++|||+|+++|+|+|++- ..++.++...... -.+..+++ +++.. .-...+.- . ........
T Consensus 1 g~lvlFiGAG~S~~~glP~W~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~a--~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (242)
T cd01406 1 GRVVIFVGAGVSVSSGLPDWKTLLDEIASELGLEIDGYSVEAKDENDYLELA--ELLEKEFGTIGIKINAVLEEKTRPDF 78 (242)
T ss_pred CCEEEEecCccccccCCCChHHHHHHHHHHcCCccchhhccccchhhHHHHH--HHHHHHhccchhhhHHHHHhccCCCC
Confidence 47899999999999999999873 4555554322110 00111111 11111 11111111 1 11223467
Q ss_pred CCChHHHHHHHHHHcCC-cceeeecCccchHhhhC----------------------CCCeeEcCccccc
Q psy6862 261 KPSPCHRFIKMLERHGK-LLRNYSQNIDTLEQVAG----------------------IENVIECHDWVGV 307 (315)
Q Consensus 261 ~Pn~~H~aLa~Le~~Gk-l~~VITQNIDgLhqkAG----------------------~~kVIElHGSl~q 307 (315)
+|++.|.+|++|...++ ...|||+|.|.|.++|- ...|+.+||++..
T Consensus 79 ~~~~~h~~i~~l~~~~~~~~~iiTTNyD~llE~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~klHG~~~~ 148 (242)
T cd01406 79 EPSPLHELLLRLFINNEGDVIIITTNYDRLLETALKEINKVVKVIVSVQLALSASARFNGVYKIHGDVDD 148 (242)
T ss_pred CCCHHHHHHHhchhccCCceEEEEcchHHHHHHHHHHcCCCCCcccCccccccccCCCceEEEEecccCC
Confidence 89999999999987664 66899999999998751 1369999999863
No 22
>PF04574 DUF592: Protein of unknown function (DUF592); InterPro: IPR007654 This N-terminal region is found in SIR2 proteins (IPR003000 from INTERPRO) and its homologues. Its function is uncharacterised.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0017136 NAD-dependent histone deacetylase activity, 0051287 NAD binding, 0006342 chromatin silencing, 0006355 regulation of transcription, DNA-dependent, 0006476 protein deacetylation; PDB: 2HJH_B.
Probab=97.63 E-value=3.4e-05 Score=68.19 Aligned_cols=79 Identities=33% Similarity=0.489 Sum_probs=20.5
Q ss_pred CCcchHHHHHHHhhCCCCHHHHHHHh--hcCCCCCCCCCC-----------------------------hHHHHHHHH--
Q psy6862 118 NFSGSLLWIRKQMANGINPRDVLSHI--LGADARIPDHID-----------------------------DQTAWRLVL-- 164 (315)
Q Consensus 118 ~~~g~~~~~~~~~~~g~~~~~il~~~--~~~~~~~p~~~~-----------------------------~~~~~~~l~-- 164 (315)
+.+|.++|+++|++..++...|...+ ||+ .|++.+ .+..++++.
T Consensus 40 K~~G~~kFLd~YLPe~~ns~~I~~lIklLGF---~~kd~~~~~~i~~~v~~~~~~~~~~~~~~~~DpLe~~~~~~lIk~L 116 (153)
T PF04574_consen 40 KYYGLMKFLDKYLPEEANSLDIYYLIKLLGF---EPKDIELLNAIYKNVESDANSQDDLSYNYFEDPLEKKQIVRLIKDL 116 (153)
T ss_dssp --------------------------------------------------------------------EEEEE---B-EE
T ss_pred HHhCHHHHHHHhCCCCCcHHHHHHHHHHhCC---CcccHHHHHHHHHHhhhcccccccccccccCCchhHHHHHHHHHHH
Confidence 56899999999999999999998765 443 222111 011222221
Q ss_pred --HhhcCccccccccccccHHHHHHHHHhCCcEEEEc
Q psy6862 165 --NMICEPRRRQRLRHIGTFNDVIHLLKTCSKIIVLT 199 (315)
Q Consensus 165 --~~~~~~~~r~kl~~~~tLe~l~elI~~Ak~IVVlT 199 (315)
+|-++...|.|++..+++++++++|++|++|+|+|
T Consensus 117 q~Am~kVls~R~RL~~f~Tid~~v~~lk~akkIlVlT 153 (153)
T PF04574_consen 117 QKAMNKVLSTRIRLPNFNTIDDVVDLLKSAKKILVLT 153 (153)
T ss_dssp --------------TT--SHHHHHHHHHH-SSEEEEE
T ss_pred HHHHHHHHHHHhhcCCcCcHHHHHHHHHhcCceEEeC
Confidence 23466789999999999999999999999999997
No 23
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=63.96 E-value=3.7 Score=34.09 Aligned_cols=25 Identities=24% Similarity=0.526 Sum_probs=20.5
Q ss_pred HHHHHHHHHhCCcEEEEcCCCCCcc
Q psy6862 182 FNDVIHLLKTCSKIIVLTGAGVSVS 206 (315)
Q Consensus 182 Le~l~elI~~Ak~IVVlTGAGISaa 206 (315)
+++++++|++|++.++++|.|+..+
T Consensus 1 i~~~~~~L~~A~rP~il~G~g~~~~ 25 (137)
T PF00205_consen 1 IDEAADLLSSAKRPVILAGRGARRS 25 (137)
T ss_dssp HHHHHHHHHH-SSEEEEE-HHHHHT
T ss_pred CHHHHHHHHhCCCEEEEEcCCcChh
Confidence 5789999999999999999998844
No 24
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=56.96 E-value=18 Score=32.72 Aligned_cols=27 Identities=11% Similarity=0.119 Sum_probs=23.7
Q ss_pred cccHHHHHHHHHhCCcEEEEcCCCCCc
Q psy6862 179 IGTFNDVIHLLKTCSKIIVLTGAGVSV 205 (315)
Q Consensus 179 ~~tLe~l~elI~~Ak~IVVlTGAGISa 205 (315)
..+-+.++++|++|++.|++.|.|+..
T Consensus 21 ~~~p~~aa~lI~~AKrPlIivG~ga~~ 47 (171)
T PRK00945 21 IVSPKIAAMMIKKAKRPLLVVGSLLLD 47 (171)
T ss_pred ccCHHHHHHHHHhCCCcEEEECcCccc
Confidence 346688999999999999999999976
No 25
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=49.25 E-value=18 Score=38.17 Aligned_cols=77 Identities=17% Similarity=0.255 Sum_probs=46.5
Q ss_pred HHHhhCCCCHHHHHHHhhcCC-------------CCCCCCCChHHHHHHHHHhhcCc--cccccccccccHHHHHHHHHh
Q psy6862 127 RKQMANGINPRDVLSHILGAD-------------ARIPDHIDDQTAWRLVLNMICEP--RRRQRLRHIGTFNDVIHLLKT 191 (315)
Q Consensus 127 ~~~~~~g~~~~~il~~~~~~~-------------~~~p~~~~~~~~~~~l~~~~~~~--~~r~kl~~~~tLe~l~elI~~ 191 (315)
-||...=..|++|+..|+..- .-+|.++.- +.|..=.+|.... ..|...+....+++++++|++
T Consensus 150 SRYfDRItRPEQl~sal~rA~~VmTDPA~~GpvTl~l~QDVq~-eA~Dyp~~FF~~rv~~~rR~~Pd~~eL~~A~~lik~ 228 (617)
T COG3962 150 SRYFDRITRPEQLMSALPRAMRVMTDPADCGPVTLALCQDVQA-EAYDYPESFFEKRVWRIRRPPPDERELADAAALIKS 228 (617)
T ss_pred HHHhhhcCCHHHHHHHHHHHHHHhCChhhcCceEEEechhhhh-hhcCCcHHhhhhhhhhccCCCCCHHHHHHHHHHHHh
Confidence 455555667999998874421 122322211 2222222333221 234444556689999999999
Q ss_pred CCcEEEEcCCCCC
Q psy6862 192 CSKIIVLTGAGVS 204 (315)
Q Consensus 192 Ak~IVVlTGAGIS 204 (315)
|++-||++|.|+=
T Consensus 229 ak~PlIvaGGGv~ 241 (617)
T COG3962 229 AKKPLIVAGGGVL 241 (617)
T ss_pred cCCCEEEecCcee
Confidence 9999999999974
No 26
>KOG4166|consensus
Probab=47.70 E-value=22 Score=37.34 Aligned_cols=30 Identities=17% Similarity=0.355 Sum_probs=26.5
Q ss_pred cccHHHHHHHHHhCCcEEEEcCCCCCccCC
Q psy6862 179 IGTFNDVIHLLKTCSKIIVLTGAGVSVSCG 208 (315)
Q Consensus 179 ~~tLe~l~elI~~Ak~IVVlTGAGISaaSG 208 (315)
+..|++++++|.-||+-|++.|+|+=.++-
T Consensus 285 ~~~i~~~a~Li~laKKPVlyvG~G~Ln~~d 314 (675)
T KOG4166|consen 285 MSHIEQIARLISLAKKPVLYVGGGCLNSSD 314 (675)
T ss_pred HHHHHHHHHHHHhccCceEEeCcccccCCc
Confidence 368999999999999999999999876654
No 27
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=44.50 E-value=18 Score=37.99 Aligned_cols=28 Identities=21% Similarity=0.410 Sum_probs=26.0
Q ss_pred ccHHHHHHHHHhCCcEEEEcCCCCCccC
Q psy6862 180 GTFNDVIHLLKTCSKIIVLTGAGVSVSC 207 (315)
Q Consensus 180 ~tLe~l~elI~~Ak~IVVlTGAGISaaS 207 (315)
.+|++++++|.+|++.||+.|.|+.-+.
T Consensus 188 ~~i~~aa~~L~~AkrPvIl~G~G~~~a~ 215 (550)
T COG0028 188 EAIRKAAELLAEAKRPVILAGGGVRRAG 215 (550)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCccccc
Confidence 6799999999999999999999998766
No 28
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=44.39 E-value=19 Score=28.65 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=21.1
Q ss_pred cHHHHHHHHHhCCcEEEEcCCCCCccCC
Q psy6862 181 TFNDVIHLLKTCSKIIVLTGAGVSVSCG 208 (315)
Q Consensus 181 tLe~l~elI~~Ak~IVVlTGAGISaaSG 208 (315)
.+++++++|.++++ |+++|.|-|...+
T Consensus 2 ~i~~~~~~i~~~~~-i~i~g~g~s~~~a 28 (139)
T cd05013 2 ALEKAVDLLAKARR-IYIFGVGSSGLVA 28 (139)
T ss_pred HHHHHHHHHHhCCE-EEEEEcCchHHHH
Confidence 57899999999976 6777888876543
No 29
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=43.39 E-value=20 Score=34.37 Aligned_cols=31 Identities=23% Similarity=0.478 Sum_probs=25.4
Q ss_pred ccccccHHHHHHHHHhC-CcEEEEcCCCCCcc
Q psy6862 176 LRHIGTFNDVIHLLKTC-SKIIVLTGAGVSVS 206 (315)
Q Consensus 176 l~~~~tLe~l~elI~~A-k~IVVlTGAGISaa 206 (315)
..-...++.++++|+.| .+|+|+.||||.+.
T Consensus 152 ~sa~eg~~~l~~li~~a~gri~Im~GaGV~~~ 183 (241)
T COG3142 152 ASALEGLDLLKRLIEQAKGRIIIMAGAGVRAE 183 (241)
T ss_pred CchhhhHHHHHHHHHHhcCCEEEEeCCCCCHH
Confidence 33446788899999987 89999999999864
No 30
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=42.69 E-value=11 Score=30.40 Aligned_cols=15 Identities=40% Similarity=0.598 Sum_probs=13.1
Q ss_pred CCcEEEEcCCCCCcc
Q psy6862 192 CSKIIVLTGAGVSVS 206 (315)
Q Consensus 192 Ak~IVVlTGAGISaa 206 (315)
.++|++++|+|+|++
T Consensus 3 ~~~ILl~C~~G~sSS 17 (95)
T TIGR00853 3 ETNILLLCAAGMSTS 17 (95)
T ss_pred ccEEEEECCCchhHH
Confidence 478999999999965
No 31
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=42.14 E-value=26 Score=31.42 Aligned_cols=26 Identities=12% Similarity=0.179 Sum_probs=23.1
Q ss_pred cccHHHHHHHHHhCCcEEEEcCCCCC
Q psy6862 179 IGTFNDVIHLLKTCSKIIVLTGAGVS 204 (315)
Q Consensus 179 ~~tLe~l~elI~~Ak~IVVlTGAGIS 204 (315)
..+-+.++++|++|++.||+.|.|+.
T Consensus 14 ~~~p~~aa~lLk~AKRPvIivG~ga~ 39 (162)
T TIGR00315 14 LVSPKLVAMMIKRAKRPLLIVGPENL 39 (162)
T ss_pred ccCHHHHHHHHHcCCCcEEEECCCcC
Confidence 34678999999999999999999996
No 32
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=40.68 E-value=12 Score=31.06 Aligned_cols=14 Identities=36% Similarity=0.601 Sum_probs=12.3
Q ss_pred CcEEEEcCCCCCcc
Q psy6862 193 SKIIVLTGAGVSVS 206 (315)
Q Consensus 193 k~IVVlTGAGISaa 206 (315)
++|++++|+|+|++
T Consensus 2 kkILlvCg~G~STS 15 (104)
T PRK09590 2 KKALIICAAGMSSS 15 (104)
T ss_pred cEEEEECCCchHHH
Confidence 57999999999876
No 33
>PRK07524 hypothetical protein; Provisional
Probab=38.10 E-value=25 Score=35.99 Aligned_cols=27 Identities=15% Similarity=0.305 Sum_probs=24.1
Q ss_pred ccccHHHHHHHHHhCCcEEEEcCCCCC
Q psy6862 178 HIGTFNDVIHLLKTCSKIIVLTGAGVS 204 (315)
Q Consensus 178 ~~~tLe~l~elI~~Ak~IVVlTGAGIS 204 (315)
..+.+++++++|++|++.||++|.|+.
T Consensus 187 ~~~~i~~~~~~L~~AkrPvil~G~g~~ 213 (535)
T PRK07524 187 APAALAQAAERLAAARRPLILAGGGAL 213 (535)
T ss_pred CHHHHHHHHHHHHhCCCcEEEECCChH
Confidence 346799999999999999999999985
No 34
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=37.84 E-value=13 Score=28.51 Aligned_cols=13 Identities=46% Similarity=0.889 Sum_probs=11.6
Q ss_pred cEEEEcCCCCCcc
Q psy6862 194 KIIVLTGAGVSVS 206 (315)
Q Consensus 194 ~IVVlTGAGISaa 206 (315)
+|++.+|+|+|++
T Consensus 1 kIlvvC~~Gi~TS 13 (90)
T PF02302_consen 1 KILVVCGSGIGTS 13 (90)
T ss_dssp EEEEEESSSSHHH
T ss_pred CEEEECCChHHHH
Confidence 5899999999986
No 35
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=36.53 E-value=28 Score=36.05 Aligned_cols=27 Identities=19% Similarity=0.434 Sum_probs=24.2
Q ss_pred ccccHHHHHHHHHhCCcEEEEcCCCCC
Q psy6862 178 HIGTFNDVIHLLKTCSKIIVLTGAGVS 204 (315)
Q Consensus 178 ~~~tLe~l~elI~~Ak~IVVlTGAGIS 204 (315)
....+++++++|++|++.||++|.|+-
T Consensus 199 ~~~~l~~~~~~L~~AkrPvIi~G~g~~ 225 (569)
T PRK09259 199 APEAVDRALDLLKKAKRPLIILGKGAA 225 (569)
T ss_pred CHHHHHHHHHHHHhCCCCEEEECcCcc
Confidence 346799999999999999999999985
No 36
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=35.59 E-value=17 Score=29.19 Aligned_cols=13 Identities=46% Similarity=0.731 Sum_probs=11.7
Q ss_pred cEEEEcCCCCCcc
Q psy6862 194 KIIVLTGAGVSVS 206 (315)
Q Consensus 194 ~IVVlTGAGISaa 206 (315)
+|++++|+|+|++
T Consensus 1 kIl~~Cg~G~sTS 13 (96)
T cd05564 1 KILLVCSAGMSTS 13 (96)
T ss_pred CEEEEcCCCchHH
Confidence 5899999999986
No 37
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=33.88 E-value=32 Score=34.91 Aligned_cols=35 Identities=20% Similarity=0.617 Sum_probs=28.6
Q ss_pred ccHHHHHHHHHhCCcEEEEcCCCCCccCCCCCcCCCchhhhccc
Q psy6862 180 GTFNDVIHLLKTCSKIIVLTGAGVSVSCGIPDFRSRDGIYSRLA 223 (315)
Q Consensus 180 ~tLe~l~elI~~Ak~IVVlTGAGISaaSGIPDFRs~~Gly~~l~ 223 (315)
.++.++.+-|.+.++|+|+.|+| |. .++|+|++..
T Consensus 17 g~i~~l~~ei~~~~kVLi~YGGG-SI--------KrnGvydqV~ 51 (384)
T COG1979 17 GQIAELREEIPKDAKVLIVYGGG-SI--------KKNGVYDQVV 51 (384)
T ss_pred chHHHHHhhccccCeEEEEecCc-cc--------cccchHHHHH
Confidence 47888888999999999999999 42 3589998853
No 38
>PRK07586 hypothetical protein; Validated
Probab=33.72 E-value=33 Score=34.85 Aligned_cols=28 Identities=11% Similarity=0.143 Sum_probs=24.6
Q ss_pred ccccHHHHHHHHHhCCcEEEEcCCCCCc
Q psy6862 178 HIGTFNDVIHLLKTCSKIIVLTGAGVSV 205 (315)
Q Consensus 178 ~~~tLe~l~elI~~Ak~IVVlTGAGISa 205 (315)
....+++++++|++|++.||+.|.|+..
T Consensus 183 ~~~~v~~~~~~L~~A~rPvi~~G~g~~~ 210 (514)
T PRK07586 183 DPAAVEAAAAALRSGEPTVLLLGGRALR 210 (514)
T ss_pred CHHHHHHHHHHHHhcCCCEEEeCCcccc
Confidence 3457899999999999999999999863
No 39
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=33.31 E-value=21 Score=29.44 Aligned_cols=14 Identities=36% Similarity=0.541 Sum_probs=12.5
Q ss_pred CcEEEEcCCCCCcc
Q psy6862 193 SKIIVLTGAGVSVS 206 (315)
Q Consensus 193 k~IVVlTGAGISaa 206 (315)
++|++++|+|+|++
T Consensus 4 kkIllvC~~G~sTS 17 (106)
T PRK10499 4 KHIYLFCSAGMSTS 17 (106)
T ss_pred CEEEEECCCCccHH
Confidence 57999999999976
No 40
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=33.29 E-value=32 Score=35.93 Aligned_cols=27 Identities=26% Similarity=0.491 Sum_probs=24.3
Q ss_pred cccHHHHHHHHHhCCcEEEEcCCCCCc
Q psy6862 179 IGTFNDVIHLLKTCSKIIVLTGAGVSV 205 (315)
Q Consensus 179 ~~tLe~l~elI~~Ak~IVVlTGAGISa 205 (315)
.+.+++++++|++|++.||+.|.|+..
T Consensus 208 ~~~i~~~~~~L~~AkrPvil~G~g~~~ 234 (587)
T PRK06965 208 SGQIRKAVSLLLSAKRPYIYTGGGVIL 234 (587)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCccc
Confidence 457999999999999999999999963
No 41
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=33.04 E-value=31 Score=36.02 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=24.0
Q ss_pred ccccHHHHHHHHHhCCcEEEEcCCCCC
Q psy6862 178 HIGTFNDVIHLLKTCSKIIVLTGAGVS 204 (315)
Q Consensus 178 ~~~tLe~l~elI~~Ak~IVVlTGAGIS 204 (315)
....+++++++|++|++.||++|.|+.
T Consensus 194 ~~~~i~~a~~~L~~AkrPvi~~G~g~~ 220 (597)
T PRK08273 194 YDEDLRRAAEVLNAGRKVAILVGAGAL 220 (597)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECcchH
Confidence 345789999999999999999999985
No 42
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=32.76 E-value=32 Score=35.83 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=23.6
Q ss_pred cccHHHHHHHHHhCCcEEEEcCCCCC
Q psy6862 179 IGTFNDVIHLLKTCSKIIVLTGAGVS 204 (315)
Q Consensus 179 ~~tLe~l~elI~~Ak~IVVlTGAGIS 204 (315)
.+.+++++++|++|++.||++|.|+-
T Consensus 204 ~~~v~~a~~~L~~AkrPvil~G~g~~ 229 (585)
T CHL00099 204 IKRIEQAAKLILQSSQPLLYVGGGAI 229 (585)
T ss_pred HHHHHHHHHHHHcCCCcEEEECCCCc
Confidence 45799999999999999999999994
No 43
>PF14419 SPOUT_MTase_2: AF2226-like SPOUT RNA Methylase fused to THUMP
Probab=32.65 E-value=34 Score=31.26 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=20.5
Q ss_pred HHHHHHHHHhCCcEEEEcCCCCCccCCCC
Q psy6862 182 FNDVIHLLKTCSKIIVLTGAGVSVSCGIP 210 (315)
Q Consensus 182 Le~l~elI~~Ak~IVVlTGAGISaaSGIP 210 (315)
-++|++.++.++.++|+.||- -|||
T Consensus 110 k~~L~~~~r~~~eV~v~iGSR----eGiP 134 (173)
T PF14419_consen 110 KDKLAEDLRYAKEVVVFIGSR----EGIP 134 (173)
T ss_pred HHHHHHHHhhCcEEEEEEEcc----cCCC
Confidence 467888999999999999986 4565
No 44
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=32.39 E-value=35 Score=35.75 Aligned_cols=27 Identities=15% Similarity=0.297 Sum_probs=24.0
Q ss_pred cccHHHHHHHHHhCCcEEEEcCCCCCc
Q psy6862 179 IGTFNDVIHLLKTCSKIIVLTGAGVSV 205 (315)
Q Consensus 179 ~~tLe~l~elI~~Ak~IVVlTGAGISa 205 (315)
...+++++++|++|++.||+.|.|+..
T Consensus 218 ~~~i~~~~~~L~~AkrPlIl~G~g~~~ 244 (612)
T PRK07789 218 GKQIREAAKLIAAARRPVLYVGGGVIR 244 (612)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCccc
Confidence 456999999999999999999999953
No 45
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=32.03 E-value=35 Score=35.38 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=24.7
Q ss_pred cccHHHHHHHHHhCCcEEEEcCCCCCcc
Q psy6862 179 IGTFNDVIHLLKTCSKIIVLTGAGVSVS 206 (315)
Q Consensus 179 ~~tLe~l~elI~~Ak~IVVlTGAGISaa 206 (315)
...+++++++|++|++.||++|.|+..+
T Consensus 193 ~~~i~~a~~~L~~A~rPvi~~G~g~~~~ 220 (574)
T PRK07979 193 KGQIKRALQTLVAAKKPVVYVGGGAINA 220 (574)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCcccc
Confidence 4569999999999999999999999644
No 46
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=31.47 E-value=38 Score=34.89 Aligned_cols=27 Identities=22% Similarity=0.481 Sum_probs=24.3
Q ss_pred ccccHHHHHHHHHhCCcEEEEcCCCCC
Q psy6862 178 HIGTFNDVIHLLKTCSKIIVLTGAGVS 204 (315)
Q Consensus 178 ~~~tLe~l~elI~~Ak~IVVlTGAGIS 204 (315)
....+++++++|++|++.||+.|.|+.
T Consensus 192 ~~~~~~~~~~~L~~AkrPvi~~G~g~~ 218 (554)
T TIGR03254 192 SPDSVDRAVELLKDAKRPLILLGKGAA 218 (554)
T ss_pred CHHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 356799999999999999999999986
No 47
>PRK06154 hypothetical protein; Provisional
Probab=31.34 E-value=40 Score=35.12 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=25.0
Q ss_pred ccccHHHHHHHHHhCCcEEEEcCCCCCcc
Q psy6862 178 HIGTFNDVIHLLKTCSKIIVLTGAGVSVS 206 (315)
Q Consensus 178 ~~~tLe~l~elI~~Ak~IVVlTGAGISaa 206 (315)
....+++++++|.+|++.||++|.|+..+
T Consensus 200 ~~~~i~~aa~~L~~A~rPvil~G~g~~~~ 228 (565)
T PRK06154 200 DPVEVVEAAALLLAAERPVIYAGQGVLYA 228 (565)
T ss_pred CHHHHHHHHHHHHhCCCCEEEECCCcccc
Confidence 34578999999999999999999999743
No 48
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=31.29 E-value=37 Score=35.50 Aligned_cols=27 Identities=15% Similarity=0.427 Sum_probs=24.3
Q ss_pred cccHHHHHHHHHhCCcEEEEcCCCCCc
Q psy6862 179 IGTFNDVIHLLKTCSKIIVLTGAGVSV 205 (315)
Q Consensus 179 ~~tLe~l~elI~~Ak~IVVlTGAGISa 205 (315)
...+++++++|++|++.||++|.|+..
T Consensus 189 ~~~i~~~~~~L~~AkrPvIl~G~g~~~ 215 (588)
T TIGR01504 189 RAQIEKAVEMLNAAERPLIVAGGGVIN 215 (588)
T ss_pred HHHHHHHHHHHHhCCCcEEEECCCcch
Confidence 457999999999999999999999874
No 49
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=31.12 E-value=37 Score=35.36 Aligned_cols=27 Identities=15% Similarity=0.395 Sum_probs=24.3
Q ss_pred ccccHHHHHHHHHhCCcEEEEcCCCCC
Q psy6862 178 HIGTFNDVIHLLKTCSKIIVLTGAGVS 204 (315)
Q Consensus 178 ~~~tLe~l~elI~~Ak~IVVlTGAGIS 204 (315)
....+++++++|++|++.||++|.|+.
T Consensus 186 ~~~~v~~~~~~L~~AkrPvil~G~g~~ 212 (575)
T TIGR02720 186 DVEAVTRAVQTLKAAERPVIYYGIGAR 212 (575)
T ss_pred CHHHHHHHHHHHHcCCCcEEEECcchh
Confidence 345799999999999999999999996
No 50
>PRK08322 acetolactate synthase; Reviewed
Probab=30.56 E-value=42 Score=34.39 Aligned_cols=27 Identities=15% Similarity=0.327 Sum_probs=23.7
Q ss_pred ccccHHHHHHHHHhCCcEEEEcCCCCC
Q psy6862 178 HIGTFNDVIHLLKTCSKIIVLTGAGVS 204 (315)
Q Consensus 178 ~~~tLe~l~elI~~Ak~IVVlTGAGIS 204 (315)
....+++++++|++|++.||++|.|+.
T Consensus 182 ~~~~i~~~~~~l~~A~rPviv~G~g~~ 208 (547)
T PRK08322 182 SPKAIERAAEAIQAAKNPLILIGAGAN 208 (547)
T ss_pred CHHHHHHHHHHHHhCCCcEEEECCCcc
Confidence 346788999999999999999999985
No 51
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=30.36 E-value=43 Score=34.76 Aligned_cols=28 Identities=18% Similarity=0.372 Sum_probs=24.3
Q ss_pred ccccHHHHHHHHHhCCcEEEEcCCCCCc
Q psy6862 178 HIGTFNDVIHLLKTCSKIIVLTGAGVSV 205 (315)
Q Consensus 178 ~~~tLe~l~elI~~Ak~IVVlTGAGISa 205 (315)
....+++++++|++|++.+|++|.|+..
T Consensus 182 ~~~~i~~~~~~L~~A~rP~i~~G~g~~~ 209 (579)
T TIGR03457 182 GATSLAQAARLLAEAKFPVIISGGGVVM 209 (579)
T ss_pred CHHHHHHHHHHHHhCCCCEEEECcCccc
Confidence 3456899999999999999999999863
No 52
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=30.33 E-value=27 Score=29.51 Aligned_cols=14 Identities=43% Similarity=0.684 Sum_probs=12.5
Q ss_pred CcEEEEcCCCCCcc
Q psy6862 193 SKIIVLTGAGVSVS 206 (315)
Q Consensus 193 k~IVVlTGAGISaa 206 (315)
++|+++++||+|++
T Consensus 2 k~IlLvC~aGmSTS 15 (102)
T COG1440 2 KKILLVCAAGMSTS 15 (102)
T ss_pred ceEEEEecCCCcHH
Confidence 58999999999976
No 53
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=29.94 E-value=38 Score=35.60 Aligned_cols=27 Identities=15% Similarity=0.383 Sum_probs=24.2
Q ss_pred ccccHHHHHHHHHhCCcEEEEcCCCCC
Q psy6862 178 HIGTFNDVIHLLKTCSKIIVLTGAGVS 204 (315)
Q Consensus 178 ~~~tLe~l~elI~~Ak~IVVlTGAGIS 204 (315)
..+.+++++++|++|++.||+.|.|+.
T Consensus 210 ~~~~v~~~~~~L~~AkrPvI~~G~g~~ 236 (616)
T PRK07418 210 NPRQINAALKLIEEAERPLLYVGGGAI 236 (616)
T ss_pred CHHHHHHHHHHHHhCCCCEEEECCCcC
Confidence 446799999999999999999999985
No 54
>PLN02470 acetolactate synthase
Probab=29.86 E-value=39 Score=35.19 Aligned_cols=27 Identities=15% Similarity=0.427 Sum_probs=24.0
Q ss_pred ccccHHHHHHHHHhCCcEEEEcCCCCC
Q psy6862 178 HIGTFNDVIHLLKTCSKIIVLTGAGVS 204 (315)
Q Consensus 178 ~~~tLe~l~elI~~Ak~IVVlTGAGIS 204 (315)
..+.+++++++|++|++.||++|.|+.
T Consensus 201 ~~~~i~~~~~~L~~A~rPvI~~G~g~~ 227 (585)
T PLN02470 201 EKSQLEQIVRLISESKRPVVYVGGGCL 227 (585)
T ss_pred CHHHHHHHHHHHHcCCCCEEEECCChh
Confidence 345699999999999999999999985
No 55
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=29.82 E-value=44 Score=34.27 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=23.7
Q ss_pred cccHHHHHHHHHhCCcEEEEcCCCCCc
Q psy6862 179 IGTFNDVIHLLKTCSKIIVLTGAGVSV 205 (315)
Q Consensus 179 ~~tLe~l~elI~~Ak~IVVlTGAGISa 205 (315)
...+++++++|++|++.||+.|.|+..
T Consensus 182 ~~~i~~~~~~l~~A~rPvi~~G~g~~~ 208 (539)
T TIGR02418 182 DDAIDEVAEAIQNAKLPVLLLGLRASS 208 (539)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCcCc
Confidence 347899999999999999999999864
No 56
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=29.77 E-value=39 Score=35.00 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=23.6
Q ss_pred ccccHHHHHHHHHhCCcEEEEcCCCCC
Q psy6862 178 HIGTFNDVIHLLKTCSKIIVLTGAGVS 204 (315)
Q Consensus 178 ~~~tLe~l~elI~~Ak~IVVlTGAGIS 204 (315)
....+++++++|++|++.||++|.|+.
T Consensus 199 ~~~~i~~~~~~L~~AkrPvil~G~g~~ 225 (578)
T PRK06112 199 APQRLAEAASLLAQAQRPVVVAGGGVH 225 (578)
T ss_pred CHHHHHHHHHHHHcCCCcEEEECCCcc
Confidence 345789999999999999999999975
No 57
>PRK11269 glyoxylate carboligase; Provisional
Probab=29.57 E-value=42 Score=35.03 Aligned_cols=28 Identities=14% Similarity=0.405 Sum_probs=24.2
Q ss_pred ccccHHHHHHHHHhCCcEEEEcCCCCCc
Q psy6862 178 HIGTFNDVIHLLKTCSKIIVLTGAGVSV 205 (315)
Q Consensus 178 ~~~tLe~l~elI~~Ak~IVVlTGAGISa 205 (315)
....+++++++|++|++.||+.|.|+..
T Consensus 189 ~~~~i~~~~~~L~~AkrPvil~G~g~~~ 216 (591)
T PRK11269 189 TRAQIEKALEMLNAAERPLIVAGGGVIN 216 (591)
T ss_pred CHHHHHHHHHHHHhCCCcEEEECCCCcc
Confidence 3457899999999999999999999853
No 58
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=29.31 E-value=40 Score=35.04 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=23.6
Q ss_pred cccHHHHHHHHHhCCcEEEEcCCCCC
Q psy6862 179 IGTFNDVIHLLKTCSKIIVLTGAGVS 204 (315)
Q Consensus 179 ~~tLe~l~elI~~Ak~IVVlTGAGIS 204 (315)
...+++++++|++|++.||++|.|+.
T Consensus 193 ~~~i~~~~~~L~~A~rPvil~G~g~~ 218 (572)
T PRK08979 193 KGQIKRGLQALLAAKKPVLYVGGGAI 218 (572)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 45699999999999999999999985
No 59
>PHA02698 hypothetical protein; Provisional
Probab=29.23 E-value=44 Score=27.16 Aligned_cols=17 Identities=35% Similarity=0.724 Sum_probs=14.9
Q ss_pred CCccCHHHHHHHHhcCC
Q psy6862 17 PPVINVEDLLQQLLDGG 33 (315)
Q Consensus 17 ~~~~~~~~~~~~~~~~~ 33 (315)
-|-.||++|+.+++|+-
T Consensus 5 GpRl~v~~lIDrmlddv 21 (89)
T PHA02698 5 GPRLNVDELIDRMLDDV 21 (89)
T ss_pred ccccCHHHHHHHHHhcc
Confidence 47789999999999984
No 60
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=29.22 E-value=43 Score=34.95 Aligned_cols=27 Identities=15% Similarity=0.283 Sum_probs=24.0
Q ss_pred cccHHHHHHHHHhCCcEEEEcCCCCCc
Q psy6862 179 IGTFNDVIHLLKTCSKIIVLTGAGVSV 205 (315)
Q Consensus 179 ~~tLe~l~elI~~Ak~IVVlTGAGISa 205 (315)
...+++++++|++|++.||++|.|+..
T Consensus 201 ~~~~~~~~~~L~~A~rPvIl~G~g~~~ 227 (570)
T PRK06725 201 SMKLREVAKAISKAKRPLLYIGGGVIH 227 (570)
T ss_pred HHHHHHHHHHHHcCCCcEEEECCCccc
Confidence 457999999999999999999999953
No 61
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=28.43 E-value=45 Score=35.00 Aligned_cols=27 Identities=19% Similarity=0.450 Sum_probs=23.9
Q ss_pred cccHHHHHHHHHhCCcEEEEcCCCCCc
Q psy6862 179 IGTFNDVIHLLKTCSKIIVLTGAGVSV 205 (315)
Q Consensus 179 ~~tLe~l~elI~~Ak~IVVlTGAGISa 205 (315)
.+.+++++++|++|++.||++|.|+..
T Consensus 199 ~~~l~~a~~~L~~A~rPvil~G~g~~~ 225 (595)
T PRK09107 199 AEAITEAVELLANAKRPVIYSGGGVIN 225 (595)
T ss_pred HHHHHHHHHHHHhCCCcEEEECCcccc
Confidence 346999999999999999999999853
No 62
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=28.06 E-value=49 Score=34.40 Aligned_cols=28 Identities=7% Similarity=0.107 Sum_probs=24.4
Q ss_pred ccccHHHHHHHHHhCCcEEEEcCCCCCc
Q psy6862 178 HIGTFNDVIHLLKTCSKIIVLTGAGVSV 205 (315)
Q Consensus 178 ~~~tLe~l~elI~~Ak~IVVlTGAGISa 205 (315)
....+++++++|++|++.||+.|.|+..
T Consensus 206 ~~~~~~~~~~~L~~AkrPvi~~G~g~~~ 233 (569)
T PRK08327 206 DPEDIARAAEMLAAAERPVIITWRAGRT 233 (569)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEecccCC
Confidence 3457899999999999999999999864
No 63
>PRK07064 hypothetical protein; Provisional
Probab=28.06 E-value=41 Score=34.45 Aligned_cols=27 Identities=11% Similarity=0.288 Sum_probs=23.6
Q ss_pred ccccHHHHHHHHHhCCcEEEEcCCCCC
Q psy6862 178 HIGTFNDVIHLLKTCSKIIVLTGAGVS 204 (315)
Q Consensus 178 ~~~tLe~l~elI~~Ak~IVVlTGAGIS 204 (315)
..+.+++++++|.+|++.||++|.|+.
T Consensus 189 ~~~~i~~~~~~l~~AkrPvi~~G~g~~ 215 (544)
T PRK07064 189 DAAAVAELAERLAAARRPLLWLGGGAR 215 (544)
T ss_pred CHHHHHHHHHHHHhCCCCEEEECCChH
Confidence 345789999999999999999999984
No 64
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=28.03 E-value=50 Score=34.33 Aligned_cols=27 Identities=19% Similarity=0.405 Sum_probs=24.0
Q ss_pred cccHHHHHHHHHhCCcEEEEcCCCCCc
Q psy6862 179 IGTFNDVIHLLKTCSKIIVLTGAGVSV 205 (315)
Q Consensus 179 ~~tLe~l~elI~~Ak~IVVlTGAGISa 205 (315)
...+++++++|++|++.||+.|.|+..
T Consensus 197 ~~~i~~~~~~L~~A~rPvil~G~g~~~ 223 (566)
T PRK07282 197 DMQIKKILKQLSKAKKPVILAGGGINY 223 (566)
T ss_pred HHHHHHHHHHHHcCCCcEEEECCCcCc
Confidence 446899999999999999999999953
No 65
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=27.84 E-value=45 Score=34.42 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=22.3
Q ss_pred ccHHHHHHHHHhCCcEEEEcCCCCC
Q psy6862 180 GTFNDVIHLLKTCSKIIVLTGAGVS 204 (315)
Q Consensus 180 ~tLe~l~elI~~Ak~IVVlTGAGIS 204 (315)
..++.++++|++|++.||++|.|+.
T Consensus 183 ~~i~~~~~~L~~AkrPvii~G~g~~ 207 (549)
T PRK06457 183 IDFSRAKELIKESEKPVLLIGGGTR 207 (549)
T ss_pred HHHHHHHHHHHcCCCcEEEECcchh
Confidence 3688999999999999999999974
No 66
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=27.81 E-value=47 Score=33.24 Aligned_cols=27 Identities=7% Similarity=0.207 Sum_probs=23.7
Q ss_pred cccHHHHHHHHHhCCcEEEEcCCCCCc
Q psy6862 179 IGTFNDVIHLLKTCSKIIVLTGAGVSV 205 (315)
Q Consensus 179 ~~tLe~l~elI~~Ak~IVVlTGAGISa 205 (315)
...+++++++|++|++.||+.|.|+..
T Consensus 198 ~~~i~~~~~~l~~AkrPvi~~G~g~~~ 224 (432)
T TIGR00173 198 PESLDELWDRLNQAKRGVIVAGPLPPA 224 (432)
T ss_pred hhhHHHHHHHHhhcCCcEEEEcCCCcH
Confidence 456899999999999999999999863
No 67
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=27.72 E-value=42 Score=34.50 Aligned_cols=24 Identities=8% Similarity=-0.020 Sum_probs=22.0
Q ss_pred cHHHHHHHHHhCCcEEEEcCCCCC
Q psy6862 181 TFNDVIHLLKTCSKIIVLTGAGVS 204 (315)
Q Consensus 181 tLe~l~elI~~Ak~IVVlTGAGIS 204 (315)
.+++++++|++|++.||+.|.|+-
T Consensus 194 ~i~~a~~~L~~AkrPvil~G~g~~ 217 (539)
T TIGR03393 194 FRDAAENKLAMAKRVSLLADFLAL 217 (539)
T ss_pred HHHHHHHHHHhCCCCEEEeChhhc
Confidence 488999999999999999999985
No 68
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=27.46 E-value=46 Score=34.39 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=23.3
Q ss_pred cccHHHHHHHHHhCCcEEEEcCCCCC
Q psy6862 179 IGTFNDVIHLLKTCSKIIVLTGAGVS 204 (315)
Q Consensus 179 ~~tLe~l~elI~~Ak~IVVlTGAGIS 204 (315)
...+++++++|++|++.||++|.|+-
T Consensus 194 ~~~~~~~~~~L~~A~rPvil~G~g~~ 219 (572)
T PRK06456 194 RLALKKAAEILINAERPIILVGTGVV 219 (572)
T ss_pred HHHHHHHHHHHHhCCCcEEEECCCCc
Confidence 35689999999999999999999985
No 69
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=27.44 E-value=28 Score=28.03 Aligned_cols=13 Identities=54% Similarity=0.698 Sum_probs=11.9
Q ss_pred cEEEEcCCCCCcc
Q psy6862 194 KIIVLTGAGVSVS 206 (315)
Q Consensus 194 ~IVVlTGAGISaa 206 (315)
+|++.+|+|++++
T Consensus 4 kILvvCgsG~~TS 16 (94)
T PRK10310 4 KIIVACGGAVATS 16 (94)
T ss_pred eEEEECCCchhHH
Confidence 7999999999986
No 70
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=27.28 E-value=46 Score=34.45 Aligned_cols=28 Identities=18% Similarity=0.272 Sum_probs=24.3
Q ss_pred cccHHHHHHHHHhCCcEEEEcCCCCCcc
Q psy6862 179 IGTFNDVIHLLKTCSKIIVLTGAGVSVS 206 (315)
Q Consensus 179 ~~tLe~l~elI~~Ak~IVVlTGAGISaa 206 (315)
...+++++++|.+|++.||++|.|+..+
T Consensus 190 ~~~i~~~~~~L~~A~rPviv~G~g~~~~ 217 (563)
T PRK08527 190 SRQIKKAAEAIKEAKKPLFYLGGGAILS 217 (563)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCcccc
Confidence 4568999999999999999999999643
No 71
>PRK08617 acetolactate synthase; Reviewed
Probab=27.17 E-value=45 Score=34.31 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=23.2
Q ss_pred cccHHHHHHHHHhCCcEEEEcCCCCC
Q psy6862 179 IGTFNDVIHLLKTCSKIIVLTGAGVS 204 (315)
Q Consensus 179 ~~tLe~l~elI~~Ak~IVVlTGAGIS 204 (315)
...+++++++|++|++.||++|.|+.
T Consensus 188 ~~~i~~~~~~L~~AkrPvi~~G~g~~ 213 (552)
T PRK08617 188 PEDINYLAELIKNAKLPVLLLGMRAS 213 (552)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 34689999999999999999999975
No 72
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=27.10 E-value=47 Score=34.23 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=23.2
Q ss_pred cccHHHHHHHHHhCCcEEEEcCCCCC
Q psy6862 179 IGTFNDVIHLLKTCSKIIVLTGAGVS 204 (315)
Q Consensus 179 ~~tLe~l~elI~~Ak~IVVlTGAGIS 204 (315)
...+++++++|.+|++.||++|.|.-
T Consensus 188 ~~~i~~~~~~L~~AkrPvi~~G~g~~ 213 (558)
T TIGR00118 188 PLQIKKAAELINLAKKPVILVGGGVI 213 (558)
T ss_pred HHHHHHHHHHHHhCCCcEEEECCCcc
Confidence 34689999999999999999999985
No 73
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=26.98 E-value=44 Score=34.34 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=23.3
Q ss_pred cccHHHHHHHHHhCCcEEEEcCCCCC
Q psy6862 179 IGTFNDVIHLLKTCSKIIVLTGAGVS 204 (315)
Q Consensus 179 ~~tLe~l~elI~~Ak~IVVlTGAGIS 204 (315)
...+++++++|++|++.||++|.|+.
T Consensus 183 ~~~l~~~~~~L~~AkrPvIl~G~g~~ 208 (548)
T PRK08978 183 AAELEQARALLAQAKKPVLYVGGGVG 208 (548)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCcc
Confidence 45789999999999999999999985
No 74
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=26.50 E-value=48 Score=33.96 Aligned_cols=27 Identities=11% Similarity=0.204 Sum_probs=23.7
Q ss_pred ccccHHHHHHHHHhCCcEEEEcCCCCC
Q psy6862 178 HIGTFNDVIHLLKTCSKIIVLTGAGVS 204 (315)
Q Consensus 178 ~~~tLe~l~elI~~Ak~IVVlTGAGIS 204 (315)
....+++++++|++|++.||++|.|+.
T Consensus 192 ~~~~~~~~~~~L~~AkrPvIl~G~g~~ 218 (530)
T PRK07092 192 DPAALARLGDALDAARRPALVVGPAVD 218 (530)
T ss_pred CHHHHHHHHHHHHcCCCcEEEECCCcc
Confidence 345789999999999999999999985
No 75
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=25.88 E-value=58 Score=33.98 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=24.0
Q ss_pred ccccHHHHHHHHHhCCcEEEEcCCCCC
Q psy6862 178 HIGTFNDVIHLLKTCSKIIVLTGAGVS 204 (315)
Q Consensus 178 ~~~tLe~l~elI~~Ak~IVVlTGAGIS 204 (315)
....+++++++|.+|++.||++|.|+.
T Consensus 186 ~~~~i~~a~~~L~~A~rPvil~G~g~~ 212 (588)
T PRK07525 186 GEQSLAEAAELLSEAKFPVILSGAGVV 212 (588)
T ss_pred CHHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 345789999999999999999999985
No 76
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=25.83 E-value=49 Score=34.21 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=24.0
Q ss_pred cccHHHHHHHHHhCCcEEEEcCCCCCc
Q psy6862 179 IGTFNDVIHLLKTCSKIIVLTGAGVSV 205 (315)
Q Consensus 179 ~~tLe~l~elI~~Ak~IVVlTGAGISa 205 (315)
.+.+++++++|.+|++.||+.|.|...
T Consensus 194 ~~~i~~~a~~L~~AkrPvil~G~g~~~ 220 (561)
T PRK06048 194 PQQIKRAAELIMKAERPIIYAGGGVIS 220 (561)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCccc
Confidence 357999999999999999999999863
No 77
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=25.01 E-value=54 Score=34.22 Aligned_cols=26 Identities=19% Similarity=0.400 Sum_probs=23.4
Q ss_pred cccHHHHHHHHHhCCcEEEEcCCCCC
Q psy6862 179 IGTFNDVIHLLKTCSKIIVLTGAGVS 204 (315)
Q Consensus 179 ~~tLe~l~elI~~Ak~IVVlTGAGIS 204 (315)
...+++++++|++|++.||++|.|+.
T Consensus 188 ~~~i~~a~~~L~~A~rPvii~G~g~~ 213 (578)
T PRK06546 188 PAEVRALADAINEAKKVTLFAGAGVR 213 (578)
T ss_pred HHHHHHHHHHHHcCCCcEEEECcchH
Confidence 45789999999999999999999984
No 78
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=24.93 E-value=51 Score=34.18 Aligned_cols=26 Identities=19% Similarity=0.514 Sum_probs=23.5
Q ss_pred cccHHHHHHHHHhCCcEEEEcCCCCC
Q psy6862 179 IGTFNDVIHLLKTCSKIIVLTGAGVS 204 (315)
Q Consensus 179 ~~tLe~l~elI~~Ak~IVVlTGAGIS 204 (315)
.+.+++++++|.+|++.||+.|.|+.
T Consensus 193 ~~~i~~~~~~L~~A~rPvil~G~g~~ 218 (574)
T PRK06466 193 SGQIRKAVEMLLAAKRPVIYSGGGVV 218 (574)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 45789999999999999999999985
No 79
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=24.92 E-value=52 Score=34.04 Aligned_cols=27 Identities=15% Similarity=0.334 Sum_probs=23.6
Q ss_pred cccHHHHHHHHHhCCcEEEEcCCCCCc
Q psy6862 179 IGTFNDVIHLLKTCSKIIVLTGAGVSV 205 (315)
Q Consensus 179 ~~tLe~l~elI~~Ak~IVVlTGAGISa 205 (315)
...+++++++|++|++.||++|.|+..
T Consensus 198 ~~~i~~~~~~L~~AkrPvIl~G~g~~~ 224 (564)
T PRK08155 198 EESIRDAAAMINAAKRPVLYLGGGVIN 224 (564)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCccc
Confidence 346899999999999999999999863
No 80
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=24.81 E-value=47 Score=30.81 Aligned_cols=29 Identities=24% Similarity=0.487 Sum_probs=22.4
Q ss_pred cccccHHHHHHHHHhCCcEEEEcCCCCCcc
Q psy6862 177 RHIGTFNDVIHLLKTCSKIIVLTGAGVSVS 206 (315)
Q Consensus 177 ~~~~tLe~l~elI~~Ak~IVVlTGAGISaa 206 (315)
.....+++++++|.+|++ |++.|.|.|..
T Consensus 113 ~~~~~l~~~~~~i~~a~~-I~i~G~G~s~~ 141 (278)
T PRK11557 113 NSEEKLHECVTMLRSARR-IILTGIGASGL 141 (278)
T ss_pred cCHHHHHHHHHHHhcCCe-EEEEecChhHH
Confidence 345688999999999988 56667787744
No 81
>PLN02573 pyruvate decarboxylase
Probab=24.53 E-value=52 Score=34.42 Aligned_cols=27 Identities=15% Similarity=0.276 Sum_probs=23.9
Q ss_pred cccHHHHHHHHHhCCcEEEEcCCCCCc
Q psy6862 179 IGTFNDVIHLLKTCSKIIVLTGAGVSV 205 (315)
Q Consensus 179 ~~tLe~l~elI~~Ak~IVVlTGAGISa 205 (315)
...+++++++|++|++.||+.|.|+..
T Consensus 211 ~~~~~~a~~~L~~AkrPvil~G~g~~~ 237 (578)
T PLN02573 211 EAAVEAAAEFLNKAVKPVLVGGPKLRV 237 (578)
T ss_pred HHHHHHHHHHHHhCCCCEEEEChhhcc
Confidence 356899999999999999999999864
No 82
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=24.50 E-value=57 Score=33.85 Aligned_cols=26 Identities=23% Similarity=0.461 Sum_probs=23.1
Q ss_pred cccHHHHHHHHHhCCcEEEEcCCCCC
Q psy6862 179 IGTFNDVIHLLKTCSKIIVLTGAGVS 204 (315)
Q Consensus 179 ~~tLe~l~elI~~Ak~IVVlTGAGIS 204 (315)
...+++++++|++|++.||++|.|+.
T Consensus 202 ~~~i~~~~~~L~~A~rPvIl~G~g~~ 227 (571)
T PRK07710 202 LLQIRKLVQAVSVAKKPVILAGAGVL 227 (571)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCcC
Confidence 34689999999999999999999975
No 83
>PRK12474 hypothetical protein; Provisional
Probab=24.46 E-value=59 Score=33.31 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=23.9
Q ss_pred ccccHHHHHHHHHhCCcEEEEcCCCCC
Q psy6862 178 HIGTFNDVIHLLKTCSKIIVLTGAGVS 204 (315)
Q Consensus 178 ~~~tLe~l~elI~~Ak~IVVlTGAGIS 204 (315)
....+++++++|++|++.||+.|.|+.
T Consensus 187 ~~~~i~~~~~~L~~A~rPvil~G~g~~ 213 (518)
T PRK12474 187 AAETVERIAALLRNGKKSALLLRGSAL 213 (518)
T ss_pred CHHHHHHHHHHHHcCCCcEEEECCccc
Confidence 345799999999999999999999985
No 84
>PRK08611 pyruvate oxidase; Provisional
Probab=24.44 E-value=59 Score=33.87 Aligned_cols=27 Identities=19% Similarity=0.384 Sum_probs=23.6
Q ss_pred ccccHHHHHHHHHhCCcEEEEcCCCCC
Q psy6862 178 HIGTFNDVIHLLKTCSKIIVLTGAGVS 204 (315)
Q Consensus 178 ~~~tLe~l~elI~~Ak~IVVlTGAGIS 204 (315)
....+++++++|++|++.||++|.|+.
T Consensus 189 ~~~~i~~~~~~L~~AkrPvil~G~g~~ 215 (576)
T PRK08611 189 KPKDIKKAAKLINKAKKPVILAGLGAK 215 (576)
T ss_pred CHHHHHHHHHHHHcCCCcEEEECcCcc
Confidence 335788999999999999999999985
No 85
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=24.44 E-value=58 Score=33.96 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=23.1
Q ss_pred cccHHHHHHHHHhCCcEEEEcCCCCC
Q psy6862 179 IGTFNDVIHLLKTCSKIIVLTGAGVS 204 (315)
Q Consensus 179 ~~tLe~l~elI~~Ak~IVVlTGAGIS 204 (315)
...+++++++|.+|++.||++|.|.-
T Consensus 190 ~~~i~~~~~~L~~AkrPvil~G~g~~ 215 (586)
T PRK06276 190 PLQIKKAAELIAEAERPVILAGGGVI 215 (586)
T ss_pred HHHHHHHHHHHHcCCCeEEEECCCcC
Confidence 44689999999999999999999984
No 86
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=24.21 E-value=61 Score=33.45 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=23.2
Q ss_pred cccHHHHHHHHHhCCcEEEEcCCCCC
Q psy6862 179 IGTFNDVIHLLKTCSKIIVLTGAGVS 204 (315)
Q Consensus 179 ~~tLe~l~elI~~Ak~IVVlTGAGIS 204 (315)
...+++++++|.+|++.||+.|.|..
T Consensus 191 ~~~i~~~~~~L~~A~rPvi~~G~g~~ 216 (557)
T PRK08199 191 AADLARLAELLARAERPLVILGGSGW 216 (557)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCcC
Confidence 45789999999999999999999984
No 87
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=23.98 E-value=42 Score=26.12 Aligned_cols=14 Identities=36% Similarity=0.503 Sum_probs=12.0
Q ss_pred CcEEEEcCCCCCcc
Q psy6862 193 SKIIVLTGAGVSVS 206 (315)
Q Consensus 193 k~IVVlTGAGISaa 206 (315)
++|++.+|+|++++
T Consensus 1 ~kilvvCg~G~gtS 14 (87)
T cd05567 1 KKIVFACDAGMGSS 14 (87)
T ss_pred CEEEEECCCCccHH
Confidence 47899999999875
No 88
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=23.79 E-value=68 Score=30.52 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=22.7
Q ss_pred cHHHHHHHHHhCCcEEEEcCCCCCccCC
Q psy6862 181 TFNDVIHLLKTCSKIIVLTGAGVSVSCG 208 (315)
Q Consensus 181 tLe~l~elI~~Ak~IVVlTGAGISaaSG 208 (315)
.+++++++|.+|.+-|++.|.|.|...+
T Consensus 35 ~l~~~~~~l~~a~~~I~i~G~G~S~~~a 62 (326)
T PRK10892 35 DFTLACEKMFWCKGKVVVMGMGKSGHIG 62 (326)
T ss_pred HHHHHHHHHHhcCCeEEEEeCcHhHHHH
Confidence 6899999999886568889999776544
No 89
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=23.74 E-value=59 Score=28.27 Aligned_cols=27 Identities=22% Similarity=0.334 Sum_probs=21.3
Q ss_pred ccccHHHHHHHHHhCCcEEEEcCCCCCc
Q psy6862 178 HIGTFNDVIHLLKTCSKIIVLTGAGVSV 205 (315)
Q Consensus 178 ~~~tLe~l~elI~~Ak~IVVlTGAGISa 205 (315)
....+++++++|.+|++ |++.|.|-|.
T Consensus 19 ~~~~l~~~~~~i~~a~~-I~i~G~G~S~ 45 (179)
T cd05005 19 DEEELDKLISAILNAKR-IFVYGAGRSG 45 (179)
T ss_pred CHHHHHHHHHHHHhCCe-EEEEecChhH
Confidence 35688999999999977 5667888774
No 90
>PRK05858 hypothetical protein; Provisional
Probab=23.44 E-value=72 Score=32.85 Aligned_cols=27 Identities=15% Similarity=0.287 Sum_probs=23.9
Q ss_pred ccccHHHHHHHHHhCCcEEEEcCCCCC
Q psy6862 178 HIGTFNDVIHLLKTCSKIIVLTGAGVS 204 (315)
Q Consensus 178 ~~~tLe~l~elI~~Ak~IVVlTGAGIS 204 (315)
....+++++++|.+|++.||+.|.|+.
T Consensus 189 ~~~~i~~~~~~L~~AkrPvil~G~g~~ 215 (542)
T PRK05858 189 DPDALARAAGLLAEAQRPVIMAGTDVW 215 (542)
T ss_pred CHHHHHHHHHHHHhCCCcEEEECCCcc
Confidence 345799999999999999999999985
No 91
>PRK14717 putative glycine/sarcosine/betaine reductase complex protein A; Provisional
Probab=22.91 E-value=69 Score=27.21 Aligned_cols=33 Identities=21% Similarity=0.391 Sum_probs=20.2
Q ss_pred HHHHHHHHHhCCcEEEEcCCCCCcc---------CCCCCcCCC
Q psy6862 182 FNDVIHLLKTCSKIIVLTGAGVSVS---------CGIPDFRSR 215 (315)
Q Consensus 182 Le~l~elI~~Ak~IVVlTGAGISaa---------SGIPDFRs~ 215 (315)
+.++++... +.++||+.||-=--+ .|=|+|.|+
T Consensus 9 vk~~aek~g-~eNvvV~lG~aeaEaaglaAETVt~GDPTfAGP 50 (107)
T PRK14717 9 IKELAEKYG-AENIVVILGAAEAEAAGLAAETVTNGDPTFAGP 50 (107)
T ss_pred HHHHHHhcC-CccEEEEecCcchhhccceeeeeccCCCccccc
Confidence 334444332 578888887644444 455999987
No 92
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=22.89 E-value=56 Score=28.30 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=20.6
Q ss_pred cccHHHHHHHHHhCCcEEEEcCCCCCc
Q psy6862 179 IGTFNDVIHLLKTCSKIIVLTGAGVSV 205 (315)
Q Consensus 179 ~~tLe~l~elI~~Ak~IVVlTGAGISa 205 (315)
.+.+++++++|.+|++ |++.|.|.|.
T Consensus 17 ~~~~~~~~~~l~~a~~-I~i~G~G~S~ 42 (179)
T TIGR03127 17 EEELDKLADKIIKAKR-IFVAGAGRSG 42 (179)
T ss_pred HHHHHHHHHHHHhCCE-EEEEecCHHH
Confidence 4678999999999886 6677888764
No 93
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=22.87 E-value=1.3e+02 Score=30.93 Aligned_cols=60 Identities=15% Similarity=0.258 Sum_probs=40.8
Q ss_pred CCCCCCCChHHHHHHHHHhhcCc-ccc-cccc--ccccHHHHHHHHHhCCcEEEEcCCCCCccCC
Q psy6862 148 ARIPDHIDDQTAWRLVLNMICEP-RRR-QRLR--HIGTFNDVIHLLKTCSKIIVLTGAGVSVSCG 208 (315)
Q Consensus 148 ~~~p~~~~~~~~~~~l~~~~~~~-~~r-~kl~--~~~tLe~l~elI~~Ak~IVVlTGAGISaaSG 208 (315)
.+++++ +|-.+..+|..++.-. +.+ .-.. +...+.++++.+++|+.-+|+-|-|++-+-|
T Consensus 198 ~qi~p~-sDyelisAl~~~l~G~~~~~~eev~gvp~~~i~e~a~~mKna~Fg~if~GlGlt~S~g 261 (429)
T COG1029 198 VQIKPN-SDYELISALRAALHGKEPHRSEEVAGVPIEEIEELADMMKNAKFGAIFVGLGLTSSRG 261 (429)
T ss_pred EecCCC-CcHHHHHHHHHHhcCCCCCCchhhcCCCHHHHHHHHHHHhcCCcceEEEeeceeeccc
Confidence 455554 5566777777766422 222 1111 2357899999999999999999999996644
No 94
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=22.78 E-value=68 Score=33.17 Aligned_cols=26 Identities=23% Similarity=0.442 Sum_probs=23.3
Q ss_pred cccHHHHHHHHHhCCcEEEEcCCCCC
Q psy6862 179 IGTFNDVIHLLKTCSKIIVLTGAGVS 204 (315)
Q Consensus 179 ~~tLe~l~elI~~Ak~IVVlTGAGIS 204 (315)
...+++++++|.+|++.||++|.|+-
T Consensus 193 ~~~i~~~~~~l~~A~rPvi~~G~g~~ 218 (574)
T PRK06882 193 KGQIKKALKALLVAKKPVLFVGGGVI 218 (574)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 35688999999999999999999985
No 95
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=22.08 E-value=64 Score=29.81 Aligned_cols=30 Identities=27% Similarity=0.419 Sum_probs=23.6
Q ss_pred ccccHHHHHHHHHhCCcEEEEcCCCCCccCC
Q psy6862 178 HIGTFNDVIHLLKTCSKIIVLTGAGVSVSCG 208 (315)
Q Consensus 178 ~~~tLe~l~elI~~Ak~IVVlTGAGISaaSG 208 (315)
..+.+++++++|.+|++ |++.|.|.|...+
T Consensus 114 d~~~i~~~~~~i~~a~~-I~i~G~G~S~~~a 143 (284)
T PRK11302 114 DPSAINRAVDLLTQAKK-ISFFGLGASAAVA 143 (284)
T ss_pred CHHHHHHHHHHHHcCCe-EEEEEcchHHHHH
Confidence 35689999999999987 6778888775543
No 96
>KOG2278|consensus
Probab=21.77 E-value=33 Score=31.94 Aligned_cols=121 Identities=17% Similarity=0.232 Sum_probs=65.1
Q ss_pred CCCCCCCCCCCCCcchHHHHHHHhhCCCCHHHHHHHhhcCCCCCCCCCChHHHHHHHHHhhcCcccccccccc------c
Q psy6862 107 SDISGLDWKSGNFSGSLLWIRKQMANGINPRDVLSHILGADARIPDHIDDQTAWRLVLNMICEPRRRQRLRHI------G 180 (315)
Q Consensus 107 ~d~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~il~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~r~kl~~~------~ 180 (315)
.|-+++-|--.+..-.++-+| +..+|..+.. ...+| ..--.++|+...+++...-.|.+..+. -
T Consensus 71 ~d~~~el~IrAnQGHSik~vq--------~~~~l~pi~~-~s~lP-~lVHGT~~k~~~~Il~sGls~m~RnHvHlspGl~ 140 (207)
T KOG2278|consen 71 IDEAGELLIRANQGHSIKTVQ--------SEKLLKPILS-PSELP-VLVHGTYRKNWPSILASGLSRMNRNHVHLSPGLP 140 (207)
T ss_pred ecCCCcEEEEecCCcceeecc--------hhhhhcccCC-hhhCc-hheechhhhhhHHHHHhhcccccCCeeeecCCCC
Confidence 445566665443333333333 3334444322 23455 233347788777766543333222221 1
Q ss_pred cHHHHHHHHHhCCcEEEEcCCCCCccCCCCCcCCCchhhhccccCCCCCCChhhhcchHhhhcCC
Q psy6862 181 TFNDVIHLLKTCSKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFKQDP 245 (315)
Q Consensus 181 tLe~l~elI~~Ak~IVVlTGAGISaaSGIPDFRs~~Gly~~l~~~f~~l~dP~emfd~~~F~~dP 245 (315)
.--.++.-++.+-++.|+.-.----+-||+-|||.+|+|-.- .+..+....||+..+
T Consensus 141 ~d~gVISGmRss~nvyIfId~~~al~dgi~fyrS~N~ViLT~--------g~vgll~~~yfk~~e 197 (207)
T KOG2278|consen 141 GDPGVISGMRSSCNVYIFIDIKKALEDGIAFYRSDNGVILTE--------GIVGLLPVKYFKKIE 197 (207)
T ss_pred CCcchhhhhhccceEEEEecchHHHhhhhHHhhhcCceEecc--------CccccccHHHhccCC
Confidence 112344456665555555544477889999999999987543 244556667777664
No 97
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=20.55 E-value=78 Score=32.77 Aligned_cols=27 Identities=7% Similarity=0.181 Sum_probs=23.5
Q ss_pred cccHHHHHHHHHhCCcEEEEcCCCCCc
Q psy6862 179 IGTFNDVIHLLKTCSKIIVLTGAGVSV 205 (315)
Q Consensus 179 ~~tLe~l~elI~~Ak~IVVlTGAGISa 205 (315)
...+++++++|++|++.||+.|.|+..
T Consensus 188 ~~~v~~~~~~l~~AkrPvi~~G~g~~~ 214 (535)
T TIGR03394 188 DACADEVLARMRSATSPVMMVCVEVRR 214 (535)
T ss_pred HHHHHHHHHHHHhCCCCEEEEChhhcc
Confidence 346888999999999999999999863
No 98
>PRK08266 hypothetical protein; Provisional
Probab=20.48 E-value=76 Score=32.53 Aligned_cols=26 Identities=12% Similarity=0.326 Sum_probs=22.8
Q ss_pred cccHHHHHHHHHhCCcEEEEcCCCCC
Q psy6862 179 IGTFNDVIHLLKTCSKIIVLTGAGVS 204 (315)
Q Consensus 179 ~~tLe~l~elI~~Ak~IVVlTGAGIS 204 (315)
...+++++++|.+|++.||+.|.|.+
T Consensus 192 ~~~i~~~~~~L~~AkrPvIv~G~g~~ 217 (542)
T PRK08266 192 PDAIAAAAALIAAAKNPMIFVGGGAA 217 (542)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCChh
Confidence 45688999999999999999999964
No 99
>PF11590 DNAPolymera_Pol: DNA polymerase catalytic subunit Pol; InterPro: IPR021639 This family of proteins represents the catalytic subunit, Pol, of the Herpes simplex virus DNA polymerase. Pol binds UL42, making up the DNA polymerase. UL42 is a processivity subunit which binds to the C-terminal of Pol in a similar way that the cell cycle regulator p21 binds to PCNA []. ; GO: 0003887 DNA-directed DNA polymerase activity, 0004523 ribonuclease H activity; PDB: 1DML_H.
Probab=20.15 E-value=99 Score=22.19 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=14.5
Q ss_pred HHHHHHHhCCcEEEEcCCCCCcc
Q psy6862 184 DVIHLLKTCSKIIVLTGAGVSVS 206 (315)
Q Consensus 184 ~l~elI~~Ak~IVVlTGAGISaa 206 (315)
+.++.+..|-.-.|..|||++..
T Consensus 2 e~a~Rl~~AgF~~i~~g~g~~~~ 24 (41)
T PF11590_consen 2 ETAERLRSAGFATIGSGAGLPSS 24 (41)
T ss_dssp HHHHHHHHTT-EEECTTS-----
T ss_pred hHHHHHHHHhHHHhccCccccch
Confidence 45677888999999999999865
Done!