Query psy6862
Match_columns 315
No_of_seqs 210 out of 1217
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 20:18:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6862.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6862hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4iao_A NAD-dependent histone d 100.0 2.2E-41 7.6E-46 338.1 15.8 191 118-310 73-304 (492)
2 2hjh_A NAD-dependent histone d 100.0 2.1E-40 7.1E-45 319.1 12.9 144 167-313 21-168 (354)
3 3glr_A NAD-dependent deacetyla 100.0 1.4E-39 4.8E-44 306.5 13.3 132 179-313 8-146 (285)
4 1q1a_A HST2 protein; ternary c 100.0 3.9E-39 1.3E-43 301.8 13.4 132 179-313 5-143 (289)
5 1j8f_A SIRT2, sirtuin 2, isofo 100.0 6E-39 2E-43 306.0 14.5 140 173-314 22-169 (323)
6 1ma3_A SIR2-AF2, transcription 100.0 2.6E-39 9E-44 297.8 9.7 125 179-313 2-130 (253)
7 3u31_A SIR2A, transcriptional 100.0 5.5E-39 1.9E-43 302.8 12.0 132 173-313 26-161 (290)
8 1yc5_A NAD-dependent deacetyla 100.0 4.6E-39 1.6E-43 294.9 10.3 123 181-313 2-128 (246)
9 3riy_A NAD-dependent deacetyla 100.0 6.5E-39 2.2E-43 298.9 11.0 127 178-313 7-141 (273)
10 1m2k_A Silent information regu 100.0 9.7E-39 3.3E-43 293.5 9.7 122 183-313 3-128 (249)
11 1q14_A HST2 protein; histone d 100.0 8.4E-38 2.9E-42 302.5 11.3 133 178-313 12-151 (361)
12 1s5p_A NAD-dependent deacetyla 100.0 4.3E-37 1.5E-41 280.4 7.1 113 192-313 1-120 (235)
13 3k35_A NAD-dependent deacetyla 100.0 6.4E-32 2.2E-36 258.0 7.8 108 180-310 32-143 (318)
14 3pki_A NAD-dependent deacetyla 100.0 1.5E-31 5E-36 258.7 6.2 108 180-310 32-143 (355)
15 3cf4_G Acetyl-COA decarboxylas 69.8 3.5 0.00012 34.7 3.6 27 179-205 21-47 (170)
16 2xhz_A KDSD, YRBH, arabinose 5 52.1 6.5 0.00022 32.3 2.1 27 181-207 37-63 (183)
17 1e2b_A Enzyme IIB-cellobiose; 46.9 6.1 0.00021 31.2 1.0 14 193-206 4-17 (106)
18 1ytl_A Acetyl-COA decarboxylas 45.1 12 0.0004 32.3 2.7 29 175-204 17-46 (174)
19 3fxa_A SIS domain protein; str 39.7 14 0.00049 30.9 2.3 29 179-207 31-59 (201)
20 3sho_A Transcriptional regulat 33.3 27 0.00092 28.6 3.0 98 178-292 25-130 (187)
21 1tvm_A PTS system, galactitol- 32.2 12 0.00042 29.6 0.7 15 193-207 22-36 (113)
22 3eya_A Pyruvate dehydrogenase 30.7 26 0.00088 34.4 2.8 27 178-204 187-213 (549)
23 2l2q_A PTS system, cellobiose- 28.3 25 0.00085 27.4 1.8 13 194-206 6-18 (109)
24 1m3s_A Hypothetical protein YC 25.3 22 0.00075 29.2 1.0 27 179-206 24-50 (186)
25 4feg_A Pyruvate oxidase; carba 24.5 38 0.0013 33.7 2.8 27 178-204 198-224 (603)
26 1twd_A Copper homeostasis prot 23.9 38 0.0013 31.3 2.4 28 179-206 155-182 (256)
27 1vkr_A Mannitol-specific PTS s 23.7 18 0.00061 29.4 0.2 17 191-207 12-28 (125)
28 2x7j_A 2-succinyl-5-enolpyruvy 23.7 47 0.0016 33.0 3.3 26 179-204 230-255 (604)
29 2ywx_A Phosphoribosylaminoimid 23.5 32 0.0011 29.7 1.8 27 180-206 38-64 (157)
30 1x4q_A U4/U6 small nuclear rib 22.8 72 0.0025 24.9 3.5 46 122-170 37-84 (92)
31 1ybh_A Acetolactate synthase, 22.6 43 0.0015 33.2 2.7 26 179-204 201-226 (590)
32 2vbi_A Pyruvate decarboxylase; 22.3 52 0.0018 32.3 3.3 25 180-204 197-221 (566)
33 3nbm_A PTS system, lactose-spe 22.0 22 0.00076 28.3 0.4 16 192-207 6-21 (108)
34 2wvg_A PDC, pyruvate decarboxy 21.7 52 0.0018 32.3 3.1 25 180-204 197-221 (568)
35 1jeo_A MJ1247, hypothetical pr 21.0 36 0.0012 27.7 1.5 29 178-207 26-54 (180)
36 1ozh_A ALS, acetolactate synth 20.8 49 0.0017 32.6 2.7 26 179-204 194-219 (566)
37 2q28_A Oxalyl-COA decarboxylas 20.5 34 0.0012 33.6 1.4 27 178-204 197-223 (564)
38 2a3n_A Putative glucosamine-fr 20.4 97 0.0033 28.6 4.5 46 154-209 23-70 (355)
39 2c31_A Oxalyl-COA decarboxylas 20.2 36 0.0012 33.5 1.6 27 178-204 199-225 (568)
No 1
>4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-41 Score=338.06 Aligned_cols=191 Identities=38% Similarity=0.625 Sum_probs=159.1
Q ss_pred CCcchHHHHHHHhhCCCCHHHHHHHh--hcCCCC-----------CCCC--------------------CChHH---HHH
Q psy6862 118 NFSGSLLWIRKQMANGINPRDVLSHI--LGADAR-----------IPDH--------------------IDDQT---AWR 161 (315)
Q Consensus 118 ~~~g~~~~~~~~~~~g~~~~~il~~~--~~~~~~-----------~p~~--------------------~~~~~---~~~ 161 (315)
+.+|.++||++||+..++...|...+ ||+... +... .+.+. +.+
T Consensus 73 k~~g~~~f~~~~~~~~~~~~~~~~~~~~lgf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (492)
T 4iao_A 73 KYYGAHKFLDTYLPEDLNSLYIYYLIKLLGFEVKDQALIGTINSIVHINSQERVQDLGSAISVTNVEDPLAKKQTVRLIK 152 (492)
T ss_dssp HHHHHHHHHHHHSCSSCCTTHHHHHHHHTTEEECCHHHHHHHHHHC---------------------CCSCHHHHHHHHH
T ss_pred HHhCHHHHHHHhCCCCcchHHHHHHHHHhCCccchHHHHHHHHHHhhhhhhhccccccchhccccccCchhHHHHHHHHH
Confidence 35799999999999999999987654 554210 1000 01112 222
Q ss_pred HHH-HhhcCccccccccccccHHHHHHHHHhCCcEEEEcCCCCCccCCCCCcCCCchhhhccccCCCCCCChhhhcchHh
Q psy6862 162 LVL-NMICEPRRRQRLRHIGTFNDVIHLLKTCSKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINY 240 (315)
Q Consensus 162 ~l~-~~~~~~~~r~kl~~~~tLe~l~elI~~Ak~IVVlTGAGISaaSGIPDFRs~~Gly~~l~~~f~~l~dP~emfd~~~ 240 (315)
.|. .+.++..+|.|+++++++++++++|++|++|||+|||||||+||||||||++|+|+++.+ .++.+|+++|+.++
T Consensus 153 ~l~~~~~r~~~~r~kl~~~~~i~~l~~~L~~ak~IVVLTGAGISTeSGIPDFRs~~GLw~~~~~--~gl~~Pe~v~s~~~ 230 (492)
T 4iao_A 153 DLQRAINKVLCTRLRLSNFFTIDHFIQKLHTARKILVLTGAGVSTSLGIPDFRSSEGFYSKIKH--LGLDDPQDVFNYNI 230 (492)
T ss_dssp HHHHHHHHHHTSCCCCTTCCSHHHHHHHHHHCSCEEEEECGGGGGGGTCCCSSSTTSHHHHHHT--SCCSCGGGGGBHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCcEEEEeCcccccccCCccccCchHHHHhhhh--cCCCCHHHhcCHHH
Confidence 222 344667899999999999999999999999999999999999999999999999998754 25678999999999
Q ss_pred hhcCChHHHHHHHHHcCCCCCCChHHHHHHHHHHcCCcceeeecCccchHhhhCC--CCeeEcCcccc--ccCc
Q psy6862 241 FKQDPRPFFKFAREIYPGQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGI--ENVIECHDWVG--VCRR 310 (315)
Q Consensus 241 F~~dP~~Fw~f~r~i~~~~~~Pn~~H~aLa~Le~~Gkl~~VITQNIDgLhqkAG~--~kVIElHGSl~--qC~~ 310 (315)
|..||+.||+|++++++..++||++|++|++|+++|++.+||||||||||++||+ ++|+|+|||++ +|..
T Consensus 231 F~~dP~~Fy~~~r~~~~~~~~Pn~aH~aLa~Le~~G~l~~VITQNIDgLHqrAG~~s~~ViELHGsl~~~~C~~ 304 (492)
T 4iao_A 231 FMHDPSVFYNIANMVLPPEKIYSPLHSFIKMLQMKGKLLRNYTQNIDNLESYAGISTDKLVQCHGSFATATCVT 304 (492)
T ss_dssp HHHCHHHHHHHGGGGCCCSSCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCTTTEEETTCCTTEEEETT
T ss_pred HhhChHHHHHHHHHhhCCcCCCCHHHHHHHHHHHCCCCceeEeccccchHhhcCCChhhEEeecCccceeecCC
Confidence 9999999999998877777899999999999999999999999999999999998 69999999997 4654
No 2
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-40 Score=319.09 Aligned_cols=144 Identities=47% Similarity=0.738 Sum_probs=131.0
Q ss_pred hcCccccccccccccHHHHHHHHHhCCcEEEEcCCCCCccCCCCCcCCCchhhhccccCCCCCCChhhhcchHhhhcCCh
Q psy6862 167 ICEPRRRQRLRHIGTFNDVIHLLKTCSKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFKQDPR 246 (315)
Q Consensus 167 ~~~~~~r~kl~~~~tLe~l~elI~~Ak~IVVlTGAGISaaSGIPDFRs~~Gly~~l~~~f~~l~dP~emfd~~~F~~dP~ 246 (315)
-+..++|.|+...+++++++++|++|++|||+|||||||+||||||||++|+|+++.+. ++.+|+++|+.++|..+|+
T Consensus 21 ~~~~~~r~~l~~~~~i~~l~~~l~~a~~IvvlTGAGISt~SGIPdFR~~~Glw~~~~~~--~l~~p~~~~~~~~F~~~P~ 98 (354)
T 2hjh_A 21 NKVLCTRLRLSNFFTIDHFIQKLHTARKILVLTGAGVSTSLGIPDFRSSEGFYSKIKHL--GLDDPQDVFNYNIFMHDPS 98 (354)
T ss_dssp --CCCCCCCCTTCCSHHHHHHHHHHCSSEEEEECGGGGGGGTCCCSSSTTSHHHHTGGG--CCSSGGGGGBHHHHHHCTH
T ss_pred HHhhccccccCcHHHHHHHHHHHHhCCcEEEEECchhhHhhCCCcccCcchHHHHHHhh--cCCCHHHhCCHHHHhcCHH
Confidence 34567899999999999999999999999999999999999999999999999987542 5668999999999999999
Q ss_pred HHHHHHHHHcCCCCCCChHHHHHHHHHHcCCcceeeecCccchHhhhCC--CCeeEcCcccc--ccCcCCC
Q psy6862 247 PFFKFAREIYPGQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGI--ENVIECHDWVG--VCRRPLN 313 (315)
Q Consensus 247 ~Fw~f~r~i~~~~~~Pn~~H~aLa~Le~~Gkl~~VITQNIDgLhqkAG~--~kVIElHGSl~--qC~~PC~ 313 (315)
.||+|++.+++..++||++|++|++|+++|++++||||||||||++||+ ++|+|+|||++ +|.. |.
T Consensus 99 ~f~~~~~~~~~~~~~Pn~~H~aLa~Le~~g~l~~viTQNVDgLh~rAG~~~~~vielHGsl~~~~C~~-C~ 168 (354)
T 2hjh_A 99 VFYNIANMVLPPEKIYSPLHSFIKMLQMKGKLLRNYTQNIDNLESYAGISTDKLVQCHGSFATATCVT-CH 168 (354)
T ss_dssp HHHHHGGGGCCCCSCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCTTTEEETTEEEEEEEETT-TC
T ss_pred HHHHHHHHHccccCCCCHHHHHHHHHHHcCCceEEEecccCcHHHHcCCCccCEEEecCCcCccccCC-CC
Confidence 9999998877767899999999999999999999999999999999998 69999999997 6766 54
No 3
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=100.00 E-value=1.4e-39 Score=306.46 Aligned_cols=132 Identities=43% Similarity=0.904 Sum_probs=121.0
Q ss_pred cccHHHHHHHHHh--CCcEEEEcCCCCCccCCCCCcCCC-chhhhccccCCCCCCChhhhcchHhhhcCChHHHHHHHHH
Q psy6862 179 IGTFNDVIHLLKT--CSKIIVLTGAGVSVSCGIPDFRSR-DGIYSRLAVDFPNLPDPQAMFDINYFKQDPRPFFKFAREI 255 (315)
Q Consensus 179 ~~tLe~l~elI~~--Ak~IVVlTGAGISaaSGIPDFRs~-~Gly~~l~~~f~~l~dP~emfd~~~F~~dP~~Fw~f~r~i 255 (315)
..++++++++|++ |++|||+|||||||+||||||||+ +|+|+++.+ +++..|+++|+..+|++||+.||.|++++
T Consensus 8 ~~~l~~la~~i~~~~a~~IvvlTGAGISteSGIPdFR~~~~Glw~~~~~--~~l~~pe~~~~~~~f~~~P~~f~~~~~~~ 85 (285)
T 3glr_A 8 KLSLQDVAELIRARACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQ--YDLPYPEAIFELPFFFHNPKPFFTLAKEL 85 (285)
T ss_dssp CCCHHHHHHHHHTTSCCCEEEEECGGGTGGGTCCCTTSSSSHHHHHHHT--TCCSSGGGGGCHHHHHHCCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHhcCCCeEEEEeCCccchhhCCCCcccCCCccccchhc--cCCCCHHHHhCHHHHhhCcHHHHHHHHHh
Confidence 4589999999997 899999999999999999999998 499998754 26778999999999999999999999998
Q ss_pred cCCCCCCChHHHHHHHHHHcCCcceeeecCccchHhhhCC--CCeeEcCcccc--ccCcCCC
Q psy6862 256 YPGQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGI--ENVIECHDWVG--VCRRPLN 313 (315)
Q Consensus 256 ~~~~~~Pn~~H~aLa~Le~~Gkl~~VITQNIDgLhqkAG~--~kVIElHGSl~--qC~~PC~ 313 (315)
+...++||++|++|++|+++|++++||||||||||++||+ ++|+|+||+++ +|.. |.
T Consensus 86 ~~~~a~Pn~~H~~La~Le~~g~l~~viTQNIDgLh~rAG~~~~~VielHGs~~~~~C~~-C~ 146 (285)
T 3glr_A 86 YPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTV-CQ 146 (285)
T ss_dssp STTSCCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCGGGEEETTEEEEEEEETT-TC
T ss_pred hhccCCCCHHHHHHHHHHHcCCCceEEeeeecchHhhcCCCcccEEEecCCCCeEEECC-CC
Confidence 8778999999999999999999999999999999999997 69999999997 5765 53
No 4
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=100.00 E-value=3.9e-39 Score=301.76 Aligned_cols=132 Identities=43% Similarity=0.848 Sum_probs=120.7
Q ss_pred cccHHHHHHHHHh--CCcEEEEcCCCCCccCCCCCcCCCc-hhhhccccCCCCCCChhhhcchHhhhcCChHHHHHHHHH
Q psy6862 179 IGTFNDVIHLLKT--CSKIIVLTGAGVSVSCGIPDFRSRD-GIYSRLAVDFPNLPDPQAMFDINYFKQDPRPFFKFAREI 255 (315)
Q Consensus 179 ~~tLe~l~elI~~--Ak~IVVlTGAGISaaSGIPDFRs~~-Gly~~l~~~f~~l~dP~emfd~~~F~~dP~~Fw~f~r~i 255 (315)
..++++++++|++ |++|||+|||||||+||||||||++ |+|+++.+ | ++.+|+++|+.++|..+|+.||+|++++
T Consensus 5 ~~~i~~l~~~i~~~~a~~ivvltGAGiSt~SGIPdfR~~~~Glw~~~~~-~-~l~~~e~~~~~~~f~~~p~~f~~~~~~~ 82 (289)
T 1q1a_A 5 EMSVRKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLAR-L-KLPYPEAVFDVDFFQSDPLPFYTLAKEL 82 (289)
T ss_dssp HHHHHHHHHHHHHSTTSCEEEEECGGGGGGGTCCCSSSTTTSGGGSCGG-G-CCSSGGGGGBHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCEEEEECCceeHhhCCCCcCCCCCcccccccc-c-CCCCHHHhcCHHHHhcCHHHHHHHHHHH
Confidence 4578999999999 9999999999999999999999985 99998753 2 5667999999999999999999999998
Q ss_pred cCCCCCCChHHHHHHHHHHcCCcceeeecCccchHhhhCC--CCeeEcCcccc--ccCcCCC
Q psy6862 256 YPGQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGI--ENVIECHDWVG--VCRRPLN 313 (315)
Q Consensus 256 ~~~~~~Pn~~H~aLa~Le~~Gkl~~VITQNIDgLhqkAG~--~kVIElHGSl~--qC~~PC~ 313 (315)
+...++||++|++|++|+++|++++||||||||||++||+ ++|+|+||++. +|.+ |.
T Consensus 83 ~~~~a~Pn~~H~~La~L~~~g~~~~viTQNVDgLh~~AG~~~~~v~elHG~~~~~~C~~-C~ 143 (289)
T 1q1a_A 83 YPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIG-CG 143 (289)
T ss_dssp CSSSCCCCHHHHHHHHHHHTTCEEEEEECCSSCHHHHTTCCGGGEEETTEEEEEEEETT-TC
T ss_pred hhCcCCCCHHHHHHHHHHhCCCccEEEecCccchHHHcCCCcccEEEecCCcCceEECC-CC
Confidence 7778999999999999999999999999999999999998 48999999997 6776 64
No 5
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=100.00 E-value=6e-39 Score=306.01 Aligned_cols=140 Identities=47% Similarity=0.940 Sum_probs=126.0
Q ss_pred cccccccccHHHHHHHHHh--CCcEEEEcCCCCCccCCCCCcCCC-chhhhccccCCCCCCChhhhcchHhhhcCChHHH
Q psy6862 173 RQRLRHIGTFNDVIHLLKT--CSKIIVLTGAGVSVSCGIPDFRSR-DGIYSRLAVDFPNLPDPQAMFDINYFKQDPRPFF 249 (315)
Q Consensus 173 r~kl~~~~tLe~l~elI~~--Ak~IVVlTGAGISaaSGIPDFRs~-~Gly~~l~~~f~~l~dP~emfd~~~F~~dP~~Fw 249 (315)
+.++....++++++++|++ |++|||+|||||||+||||||||+ +|+|+++.+ | ++++|+++|+..+|.+||+.||
T Consensus 22 ~~~~~~~~~l~~l~~~i~~~~a~~ivvltGAGiSt~SGIPdfR~~~~Glw~~~~~-~-~l~~p~~~~~~~~f~~~p~~f~ 99 (323)
T 1j8f_A 22 KERLLDELTLEGVARYMQSERCRRVICLVGAGISTSAGIPDFRSPSTGLYDNLEK-Y-HLPYPEAIFEISYFKKHPEPFF 99 (323)
T ss_dssp --CCCSSSSHHHHHHHHHSTTCCCEEEEECGGGTGGGTCCCTTCSCSTTSTTTTT-T-CCSSGGGGGBHHHHHHCCHHHH
T ss_pred CcccCCHHHHHHHHHHHHhcCCCcEEEEecchhhHhhCCCcccCCCccHHHHhhh-c-CCCCHHHHcCHHHHhcCHHHHH
Confidence 4445567789999999997 899999999999999999999999 599998753 3 5678999999999999999999
Q ss_pred HHHHHHcCCCCCCChHHHHHHHHHHcCCcceeeecCccchHhhhCC--CCeeEcCcccc--ccCcC-CCC
Q psy6862 250 KFAREIYPGQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGI--ENVIECHDWVG--VCRRP-LNQ 314 (315)
Q Consensus 250 ~f~r~i~~~~~~Pn~~H~aLa~Le~~Gkl~~VITQNIDgLhqkAG~--~kVIElHGSl~--qC~~P-C~~ 314 (315)
+|+++++...++||++|++|++|+++|++++||||||||||++||+ ++|+|+||++. +|.++ |..
T Consensus 100 ~~~r~~~~~~a~Pn~~H~aLa~L~~~g~~~~viTQNIDgLh~~AG~~~~~VielHGs~~~~~C~~~~C~~ 169 (323)
T 1j8f_A 100 ALAKELYPGQFKPTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTSHCVSASCRH 169 (323)
T ss_dssp HHHHHHSSSSCCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCGGGEEETTEEEEEEEESCTTTCC
T ss_pred HHHHHHhhCcCCCCHHHHHHHHHHhcCCCcEEEeecccchHHHcCCCcccEEEeeCCcceeecCCCccCc
Confidence 9999988778999999999999999999999999999999999997 59999999997 78887 753
No 6
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=100.00 E-value=2.6e-39 Score=297.85 Aligned_cols=125 Identities=35% Similarity=0.595 Sum_probs=105.2
Q ss_pred cccHHHHHHHHHhCCcEEEEcCCCCCccCCCCCcCCCchhhhccccCCCCCCChhhhcchHhhhcCChHHHHHHHHHc--
Q psy6862 179 IGTFNDVIHLLKTCSKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFKQDPRPFFKFAREIY-- 256 (315)
Q Consensus 179 ~~tLe~l~elI~~Ak~IVVlTGAGISaaSGIPDFRs~~Gly~~l~~~f~~l~dP~emfd~~~F~~dP~~Fw~f~r~i~-- 256 (315)
.+++++++++|++|++|||+|||||||+|||||||+.+|+|+++ +|+++++..+|..||+.||+||++++
T Consensus 2 ~~~i~~l~~~l~~a~~ivv~tGAGiS~~SGIPdfR~~~Glw~~~--------~~~~~~~~~~f~~~p~~~~~f~~~~~~~ 73 (253)
T 1ma3_A 2 EDEIRKAAEILAKSKHAVVFTGAGISAESGIPTFRGEDGLWRKY--------DPEEVASISGFKRNPRAFWEFSMEMKDK 73 (253)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECGGGSCC----------CCSCSS--------CHHHHTBHHHHTTCHHHHHHHHHHTHHH
T ss_pred hHHHHHHHHHHHhCCcEEEEEchhhhHhhCCCCcCCCCcccccC--------ChhheecHHHHhcCHHHHHHHHHHHHHh
Confidence 35689999999999999999999999999999999999999863 68999999999999999999998754
Q ss_pred CCCCCCChHHHHHHHHHHcCCcceeeecCccchHhhhCCCCeeEcCcccc--ccCcCCC
Q psy6862 257 PGQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHDWVG--VCRRPLN 313 (315)
Q Consensus 257 ~~~~~Pn~~H~aLa~Le~~Gkl~~VITQNIDgLhqkAG~~kVIElHGSl~--qC~~PC~ 313 (315)
.. ++||++|++|++|+++|++++||||||||||++||+++|+|+||++. +|. .|.
T Consensus 74 ~~-~~Pn~~H~~La~L~~~g~~~~viTQNvD~Lh~~AG~~~v~elHG~~~~~~C~-~C~ 130 (253)
T 1ma3_A 74 LF-AEPNPAHYAIAELERMGIVKAVITQNIDMLHQRAGSRRVLELHGSMDKLDCL-DCH 130 (253)
T ss_dssp HT-CCCCHHHHHHHHHHHTTSEEEEEESCCSCHHHHHTCCSEEETTEEEEEEEET-TTC
T ss_pred cc-CCCCHHHHHHHHHHhcCCCeEEEeccccccHhHhCCCCEEEeCCCcCeeeeC-CCC
Confidence 24 99999999999999999999999999999999999999999999997 676 464
No 7
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=100.00 E-value=5.5e-39 Score=302.76 Aligned_cols=132 Identities=29% Similarity=0.447 Sum_probs=119.9
Q ss_pred cccccccccHHHHHHHHHhCCcEEEEcCCCCCccCCCCCcCC-CchhhhccccCCCCCCChhhhcchHhhhcCChHHHHH
Q psy6862 173 RQRLRHIGTFNDVIHLLKTCSKIIVLTGAGVSVSCGIPDFRS-RDGIYSRLAVDFPNLPDPQAMFDINYFKQDPRPFFKF 251 (315)
Q Consensus 173 r~kl~~~~tLe~l~elI~~Ak~IVVlTGAGISaaSGIPDFRs-~~Gly~~l~~~f~~l~dP~emfd~~~F~~dP~~Fw~f 251 (315)
+++....+++++++++|++|++|||+|||||||+|||||||+ .+|+|+++ +|+++++..+|..+|+.||+|
T Consensus 26 ~~~~~~~~~i~~l~~~i~~a~~ivvlTGAGiSt~SGIPdFR~~~~Glw~~~--------~p~~~~~~~~f~~~p~~~w~~ 97 (290)
T 3u31_A 26 LKKDTQSITLEELAKIIKKCKHVVALTGSGTSAESNIPSFRGSSNSIWSKY--------DPRIYGTIWGFWKYPEKIWEV 97 (290)
T ss_dssp -CCCCEEECHHHHHHHHHTCSSEEEEECGGGTGGGTCCSCTTCTTSGGGGS--------CHHHHTBHHHHHHCHHHHHHH
T ss_pred cCcchhHHHHHHHHHHHHhCCCEEEEeCCccccccCCccccccccchhhcC--------CHHHhhCHHhhhhCHHHHHHH
Confidence 346677889999999999999999999999999999999999 79999875 689999999999999999999
Q ss_pred HHHHc-CCCCCCChHHHHHHHHHHcCCcceeeecCccchHhhhCCCCeeEcCcccc--ccCcCCC
Q psy6862 252 AREIY-PGQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHDWVG--VCRRPLN 313 (315)
Q Consensus 252 ~r~i~-~~~~~Pn~~H~aLa~Le~~Gkl~~VITQNIDgLhqkAG~~kVIElHGSl~--qC~~PC~ 313 (315)
|++++ ...++||++|++|++|+++|++++||||||||||++||+++|+|+||++. +|.. |.
T Consensus 98 ~~~~~~~~~a~Pn~~H~aLa~Le~~g~~~~viTQNVDgLh~rAG~~~vielHGs~~~~~C~~-C~ 161 (290)
T 3u31_A 98 IRDISSDYEIEINNGHVALSTLESLGYLKSVVTQNVDGLHEASGNTKVISLHGNVFEAVCCT-CN 161 (290)
T ss_dssp HHHHHHHSCCCCCHHHHHHHHHHHTTCEEEEEESCCSCHHHHTTCSCEEETTEEEEEEEETT-TC
T ss_pred HHHHhhhccCCCCHHHHHHHHHHHcCCCceEEEechHHHHHHcCCCcEEEecCCcCcceeCC-CC
Confidence 98753 25799999999999999999999999999999999999999999999997 5763 53
No 8
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=100.00 E-value=4.6e-39 Score=294.88 Aligned_cols=123 Identities=38% Similarity=0.642 Sum_probs=104.1
Q ss_pred cHHHHHHHHHhCCcEEEEcCCCCCccCCCCCcCCCchhhhccccCCCCCCChhhhcchHhhhcCChHHHHHHHHHcC--C
Q psy6862 181 TFNDVIHLLKTCSKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFKQDPRPFFKFAREIYP--G 258 (315)
Q Consensus 181 tLe~l~elI~~Ak~IVVlTGAGISaaSGIPDFRs~~Gly~~l~~~f~~l~dP~emfd~~~F~~dP~~Fw~f~r~i~~--~ 258 (315)
++++++++|++|++|||+|||||||+|||||||+++|+|+++ +| ++++..+|..||+.||+||++++. .
T Consensus 2 ~i~~l~~~l~~a~~ivv~tGAGiS~~SGIpdfR~~~Glw~~~--------~~-~~~~~~~f~~~p~~~~~~~~~~~~~~~ 72 (246)
T 1yc5_A 2 KMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKY--------SQ-NVFDIDFFYSHPEEFYRFAKEGIFPML 72 (246)
T ss_dssp CCHHHHHHHHHCSSEEEEECGGGTGGGTCCCC-------------------C-CTTBHHHHHHCHHHHHHHHHHHTGGGG
T ss_pred hHHHHHHHHHhCCCEEEEECceeehhhCCCCccCCCcccccC--------CC-ceecHHHHhhCHHHHHHHHHHHHHHhc
Confidence 467899999999999999999999999999999999999863 46 899999999999999999988753 4
Q ss_pred CCCCChHHHHHHHHHHcCCcceeeecCccchHhhhCCCCeeEcCcccc--ccCcCCC
Q psy6862 259 QFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHDWVG--VCRRPLN 313 (315)
Q Consensus 259 ~~~Pn~~H~aLa~Le~~Gkl~~VITQNIDgLhqkAG~~kVIElHGSl~--qC~~PC~ 313 (315)
+++||++|++|++|+++|++++||||||||||++||+++|+|+||++. +|. .|.
T Consensus 73 ~~~Pn~~H~~La~L~~~g~~~~viTQNvD~Lh~~AG~~~v~elHG~~~~~~C~-~C~ 128 (246)
T 1yc5_A 73 QAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHGNVEEYYCV-RCE 128 (246)
T ss_dssp GCCCCHHHHHHHHHHHTTSCSEEEECCCSCHHHHTTCSCEEETTEEEEEEEET-TTC
T ss_pred cCCCCHHHHHHHHHHhcCCCceEEeccccchHhHcCCCcEEEecCccceeEcC-CCC
Confidence 799999999999999999999999999999999999999999999997 676 464
No 9
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A*
Probab=100.00 E-value=6.5e-39 Score=298.89 Aligned_cols=127 Identities=27% Similarity=0.465 Sum_probs=114.7
Q ss_pred ccccHHHHHHHHHhCCcEEEEcCCCCCccCCCCCcCCCchhhhccccCCCCCCChhhhcchHhhhcCChHHHHHHHHH--
Q psy6862 178 HIGTFNDVIHLLKTCSKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFKQDPRPFFKFAREI-- 255 (315)
Q Consensus 178 ~~~tLe~l~elI~~Ak~IVVlTGAGISaaSGIPDFRs~~Gly~~l~~~f~~l~dP~emfd~~~F~~dP~~Fw~f~r~i-- 255 (315)
..+++++++++|++|++|||+|||||||+|||||||+++|+|+++ +++++++.++|..||+.||+||...
T Consensus 7 ~~~~i~~l~~~l~~a~~ivvlTGAGiSt~SGIPdFR~~~Glw~~~--------~~~~l~~~~~f~~~p~~~w~fy~~~~~ 78 (273)
T 3riy_A 7 PSSSMADFRKFFAKAKHIVIISGAGVSAESGVPTFRGAGGYWRKW--------QAQDLATPLAFAHNPSRVWEFYHYRRE 78 (273)
T ss_dssp CBCCHHHHHHHHHHCSEEEEEECGGGTGGGTCCCSSSGGGEETTE--------EHHHHSSHHHHHHCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCcEEEEECcccchhhCCCccccccchhhhC--------ChhhcCCHHHHhhCHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999999999999875 5788999999999999999998643
Q ss_pred cCCCCCCChHHHHHHHHHH----cCCcceeeecCccchHhhhCCCCeeEcCcccc--ccCcCCC
Q psy6862 256 YPGQFKPSPCHRFIKMLER----HGKLLRNYSQNIDTLEQVAGIENVIECHDWVG--VCRRPLN 313 (315)
Q Consensus 256 ~~~~~~Pn~~H~aLa~Le~----~Gkl~~VITQNIDgLhqkAG~~kVIElHGSl~--qC~~PC~ 313 (315)
....++||++|++|++|++ +|++++||||||||||++||+++|+|+|||+. +|.+ |.
T Consensus 79 ~~~~~~Pn~~H~~La~Le~~~~~~g~~~~viTQNiDgLh~~AG~~~vielHG~~~~~~C~~-C~ 141 (273)
T 3riy_A 79 VMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKNLLEIHGSLFKTRCTS-CG 141 (273)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHHTTTCEEEEEESCCSCHHHHHTCCSEEETTEEEEEEEETT-TC
T ss_pred HhhhCCCCHHHHHHHHHHHhhhhcCceeEEEEecccchHhhcCCCCEEEecCcCCeeEcCC-CC
Confidence 1347899999999999995 59999999999999999999999999999997 6775 54
No 10
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=100.00 E-value=9.7e-39 Score=293.49 Aligned_cols=122 Identities=32% Similarity=0.536 Sum_probs=113.0
Q ss_pred HHHHHHHHhCCcEEEEcCCCCCccCCCCCcCCCchhhhccccCCCCCCChhhhcchHhhhcCChHHHHHHHHHcC--CCC
Q psy6862 183 NDVIHLLKTCSKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFKQDPRPFFKFAREIYP--GQF 260 (315)
Q Consensus 183 e~l~elI~~Ak~IVVlTGAGISaaSGIPDFRs~~Gly~~l~~~f~~l~dP~emfd~~~F~~dP~~Fw~f~r~i~~--~~~ 260 (315)
++++++|++|++|||+|||||||+|||||||+.+|+|+++ +|+++++..+|..||+.||+|++.++. ..+
T Consensus 3 ~~l~~~i~~a~~ivvltGAGiS~~SGIPdfR~~~Glw~~~--------~~~~~~~~~~f~~~p~~~w~~~~~~~~~~~~~ 74 (249)
T 1m2k_A 3 EKLLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNRY--------RPEELANPQAFAKDPEKVWKWYAWRMEKVFNA 74 (249)
T ss_dssp HHHHHHHHTCSSEEEEECGGGGGGGTCCCSSSTTCHHHHS--------CHHHHSSHHHHHHCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCEEEEECchhhhhhCCCCccCCCcCccCC--------CHHhcccHHHHhcCHHHHHHHHHHHHHHhCcC
Confidence 6789999999999999999999999999999999999873 689999999999999999999987642 468
Q ss_pred CCChHHHHHHHHHHcCCcceeeecCccchHhhhCCCCeeEcCcccc--ccCcCCC
Q psy6862 261 KPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHDWVG--VCRRPLN 313 (315)
Q Consensus 261 ~Pn~~H~aLa~Le~~Gkl~~VITQNIDgLhqkAG~~kVIElHGSl~--qC~~PC~ 313 (315)
+||++|++|++|+++|++++||||||||||++||.++|+|+||++. +|. .|.
T Consensus 75 ~Pn~~H~~La~L~~~g~~~~viTQNiDgLh~~AG~~~v~elHG~~~~~~C~-~C~ 128 (249)
T 1m2k_A 75 QPNKAHQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHGSLRVVRCT-SCN 128 (249)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCSEEETTEEEEEEEES-SSS
T ss_pred CCCHHHHHHHHHHhCCCCcEEEECCccchhhhcCCCcEEEecCCcceeEeC-CCC
Confidence 9999999999999999999999999999999999999999999997 676 464
No 11
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=100.00 E-value=8.4e-38 Score=302.55 Aligned_cols=133 Identities=43% Similarity=0.837 Sum_probs=108.7
Q ss_pred ccccHHHHHHHHHh--CCcEEEEcCCCCCccCCCCCcCCCc-hhhhccccCCCCCCChhhhcchHhhhcCChHHHHHHHH
Q psy6862 178 HIGTFNDVIHLLKT--CSKIIVLTGAGVSVSCGIPDFRSRD-GIYSRLAVDFPNLPDPQAMFDINYFKQDPRPFFKFARE 254 (315)
Q Consensus 178 ~~~tLe~l~elI~~--Ak~IVVlTGAGISaaSGIPDFRs~~-Gly~~l~~~f~~l~dP~emfd~~~F~~dP~~Fw~f~r~ 254 (315)
+..+++.++++|++ |++|||+|||||||+||||||||.+ |+|+++.+ | ++..|+++|+..+|..+|+.||+|+++
T Consensus 12 ~~~~i~~l~~~i~~~~a~~IVvlTGAGISteSGIPdFR~~~~Glw~~~~~-~-~l~~pe~~~s~~~f~~~P~~f~~~~~~ 89 (361)
T 1q14_A 12 TEMSVRKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLAR-L-KLPYPEAVFDVDFFQSDPLPFYTLAKE 89 (361)
T ss_dssp HHHHHHHHHHHHHTSTTCCEEEEECGGGTGGGC--------------CCC-C-CCSSGGGGGBHHHHHHCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhccCCcEEEEeCcccchhcCCcccccCcchhhhcccc-c-CCCCHHHhcCHHHHhcCHHHHHHHHHH
Confidence 34578999999999 9999999999999999999999985 99998753 2 566799999999999999999999988
Q ss_pred HcCCCCCCChHHHHHHHHHHcCCcceeeecCccchHhhhCCC--CeeEcCcccc--ccCcCCC
Q psy6862 255 IYPGQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGIE--NVIECHDWVG--VCRRPLN 313 (315)
Q Consensus 255 i~~~~~~Pn~~H~aLa~Le~~Gkl~~VITQNIDgLhqkAG~~--kVIElHGSl~--qC~~PC~ 313 (315)
++...++||++|++|++|+++|++++||||||||||++||++ +|+|+||++. +|.. |.
T Consensus 90 ~~~~~a~Pn~~H~aLa~Le~~g~~~~ViTQNVDgLh~rAG~~~~~VielHGsl~~~~C~~-C~ 151 (361)
T 1q14_A 90 LYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIG-CG 151 (361)
T ss_dssp TSCCCCCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCGGGEEETTEEEEEEEETT-TC
T ss_pred HhhCcCCCCHHHHHHHHHHhcCCCcEEEecccchhHhHcCCCcceEEeccccccccCcCC-CC
Confidence 777789999999999999999999999999999999999984 8999999997 6776 64
No 12
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=100.00 E-value=4.3e-37 Score=280.37 Aligned_cols=113 Identities=29% Similarity=0.447 Sum_probs=102.8
Q ss_pred CCcEEEEcCCCCCccCCCCCcCCCchhhhccccCCCCCCChhhhcchHhhhcCChHHHHHHHHHc---C-CCCCCChHHH
Q psy6862 192 CSKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFKQDPRPFFKFAREIY---P-GQFKPSPCHR 267 (315)
Q Consensus 192 Ak~IVVlTGAGISaaSGIPDFRs~~Gly~~l~~~f~~l~dP~emfd~~~F~~dP~~Fw~f~r~i~---~-~~~~Pn~~H~ 267 (315)
|++|||+|||||||+|||||||+++|+|+++ +|+++++.++|..||+.||+||...+ . ..++||++|+
T Consensus 1 a~~ivvltGAGiS~~SGIPdfR~~~Glw~~~--------~~~~~~~~~~f~~~p~~~~~f~~~~~~~~~~~~a~Pn~~H~ 72 (235)
T 1s5p_A 1 KPRVLVLTGAGISAESGIRTFRAADGLWEEH--------RVEDVATPEGFDRDPELVQAFYNARRRQLQQPEIQPNAAHL 72 (235)
T ss_dssp CCCEEEEECTHHHHTTTCCCCCSSSCEETTE--------EHHHHSSHHHHHHCHHHHHHHHHHHHHHHTSTTCCCCHHHH
T ss_pred CCcEEEEechhhhhhhCCCCCCCCCCCccCC--------CHhHcccHHHHhhCHHHHHHHHHHHHHHhhhcCCCCCHHHH
Confidence 6899999999999999999999999999864 68999999999999999999987532 2 4699999999
Q ss_pred HHHHHHH-cCCcceeeecCccchHhhhCCCCeeEcCcccc--ccCcCCC
Q psy6862 268 FIKMLER-HGKLLRNYSQNIDTLEQVAGIENVIECHDWVG--VCRRPLN 313 (315)
Q Consensus 268 aLa~Le~-~Gkl~~VITQNIDgLhqkAG~~kVIElHGSl~--qC~~PC~ 313 (315)
+|++|++ .|++.+||||||||||++||.++|+|+||++. +|.+ |.
T Consensus 73 ~La~L~~~~g~~~~viTQNvD~Lh~~AG~~~v~elHG~~~~~~C~~-C~ 120 (235)
T 1s5p_A 73 ALAKLQDALGDRFLLVTQNIDNLHERAGNTNVIHMHGELLKVRCSQ-SG 120 (235)
T ss_dssp HHHHHHHHHGGGEEEEESCCSSHHHHHTCCSCEETTEEEEEEEETT-TC
T ss_pred HHHHHHHhhCCceEEEeccccchhhhcCCCcEEEecCCceEEEeCC-CC
Confidence 9999999 69999999999999999999999999999997 5765 54
No 13
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Probab=99.97 E-value=6.4e-32 Score=257.99 Aligned_cols=108 Identities=30% Similarity=0.452 Sum_probs=91.8
Q ss_pred ccHHHHHHHHHhCCcEEEEcCCCCCccCCCCCcCCCchhhhccccCCCCCCChhhhcchHhhhcCChHHHHHHHHHcCCC
Q psy6862 180 GTFNDVIHLLKTCSKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFKQDPRPFFKFAREIYPGQ 259 (315)
Q Consensus 180 ~tLe~l~elI~~Ak~IVVlTGAGISaaSGIPDFRs~~Gly~~l~~~f~~l~dP~emfd~~~F~~dP~~Fw~f~r~i~~~~ 259 (315)
+++++++++|++|++|||+|||||||+|||||||+++|+|+.....+ +|+ ..|.| ..
T Consensus 32 ~~i~~l~~~i~~a~~ivvlTGAGISteSGIPdFR~~~Glw~~~~~~~----~p~-------------~~~~f------~~ 88 (318)
T 3k35_A 32 RKVWELARLVWQSSSVVFHTGAGISTASGIPDFRGPHGVWTMEERGL----APK-------------FDTTF------ES 88 (318)
T ss_dssp HHHHHHHHHHHHCSCEEEEECGGGSGGGTCCCSSSTTCHHHHHTTTC----CCC-------------CSSCT------TT
T ss_pred HHHHHHHHHHHhCCCEEEEeccccChhhCCCccccCCCcchhhhccC----CHH-------------HHHHh------hh
Confidence 46888999999999999999999999999999999999998753221 221 11211 36
Q ss_pred CCCChHHHHHHHHHHcCCcceeeecCccchHhhhCC--CCeeEcCcccc--ccCc
Q psy6862 260 FKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGI--ENVIECHDWVG--VCRR 310 (315)
Q Consensus 260 ~~Pn~~H~aLa~Le~~Gkl~~VITQNIDgLhqkAG~--~kVIElHGSl~--qC~~ 310 (315)
++||.+|++|++|+++|++.+||||||||||++||+ ++|+|+|||++ +|..
T Consensus 89 a~Pn~~H~aLa~Le~~g~~~~viTQNIDgLh~rAG~~~~~VielHGsl~~~~C~~ 143 (318)
T 3k35_A 89 ARPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAK 143 (318)
T ss_dssp CCCCHHHHHHHHHHHTTCCCEEEECCCSCHHHHBTCCGGGEEETTCCTTEEEETT
T ss_pred CCCCHHHHHHHHHHHcCCceEEEEecccchHhhcCCCccCEEEeCCCCCeeEeCC
Confidence 899999999999999999999999999999999999 58999999997 5653
No 14
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Probab=99.97 E-value=1.5e-31 Score=258.71 Aligned_cols=108 Identities=29% Similarity=0.419 Sum_probs=92.0
Q ss_pred ccHHHHHHHHHhCCcEEEEcCCCCCccCCCCCcCCCchhhhccccCCCCCCChhhhcchHhhhcCChHHHHHHHHHcCCC
Q psy6862 180 GTFNDVIHLLKTCSKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFKQDPRPFFKFAREIYPGQ 259 (315)
Q Consensus 180 ~tLe~l~elI~~Ak~IVVlTGAGISaaSGIPDFRs~~Gly~~l~~~f~~l~dP~emfd~~~F~~dP~~Fw~f~r~i~~~~ 259 (315)
++++.++++|++|++|||+|||||||+|||||||+.+|+|+.....+ +|+ ..|. ..+
T Consensus 32 ~~i~~la~~i~~a~~iVvlTGAGISteSGIPDFR~~~Glw~~~~~~~----~p~-------------~~~~------f~~ 88 (355)
T 3pki_A 32 RKVWELARLVWQSSSVVFHTGAGISTASGIPDFRGPHGVWTMEERGL----APK-------------FDTT------FES 88 (355)
T ss_dssp HHHHHHHHHHHHCSSEEEEECGGGSGGGTCCCSSSTTCHHHHHHTTC----CCC-------------CSSC------TTT
T ss_pred HHHHHHHHHHHhCCCEEEEeccccchhhCCCccccCCCccchhhccC----ChH-------------HHHH------Hhh
Confidence 56889999999999999999999999999999999999998754222 221 1111 136
Q ss_pred CCCChHHHHHHHHHHcCCcceeeecCccchHhhhCC--CCeeEcCcccc--ccCc
Q psy6862 260 FKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGI--ENVIECHDWVG--VCRR 310 (315)
Q Consensus 260 ~~Pn~~H~aLa~Le~~Gkl~~VITQNIDgLhqkAG~--~kVIElHGSl~--qC~~ 310 (315)
++||.+|++|++|+++|++.+||||||||||++||+ ++|+|+|||++ +|..
T Consensus 89 a~Pn~~H~aLa~Le~~g~l~~viTQNIDgLh~rAG~~~~~VieLHGsl~~~~C~~ 143 (355)
T 3pki_A 89 ARPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAK 143 (355)
T ss_dssp CCCCHHHHHHHHHHHTTCCSEEEECCCSCHHHHEEEEGGGEEETTCCTTEEEETT
T ss_pred CCCCHHHHHHHHHHHcCCCcEEEEecccchHhhcCCCcccEEEeCCCCCceeeCC
Confidence 899999999999999999999999999999999998 58999999997 5654
No 15
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=69.75 E-value=3.5 Score=34.74 Aligned_cols=27 Identities=4% Similarity=0.042 Sum_probs=24.0
Q ss_pred cccHHHHHHHHHhCCcEEEEcCCCCCc
Q psy6862 179 IGTFNDVIHLLKTCSKIIVLTGAGVSV 205 (315)
Q Consensus 179 ~~tLe~l~elI~~Ak~IVVlTGAGISa 205 (315)
..++++++++|++|++.||+.|.|+..
T Consensus 21 ~~~v~~aa~~L~~AkrPvil~G~g~~~ 47 (170)
T 3cf4_G 21 AVSPEMAAKIISKAKRPLLMVGTLALD 47 (170)
T ss_dssp ECCHHHHHHHHHHCSSEEEEECSTTCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCccc
Confidence 456999999999999999999999863
No 16
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=52.08 E-value=6.5 Score=32.30 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=22.1
Q ss_pred cHHHHHHHHHhCCcEEEEcCCCCCccC
Q psy6862 181 TFNDVIHLLKTCSKIIVLTGAGVSVSC 207 (315)
Q Consensus 181 tLe~l~elI~~Ak~IVVlTGAGISaaS 207 (315)
.+++++++|.+|++-|++.|.|-|...
T Consensus 37 ~i~~~~~~i~~a~~~I~i~G~G~S~~~ 63 (183)
T 2xhz_A 37 NFTLACEKMFWCKGKVVVMGMGASGHI 63 (183)
T ss_dssp HHHHHHHHHHTCSSCEEEEECHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEEeecHHHHH
Confidence 899999999999855667888987654
No 17
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=46.92 E-value=6.1 Score=31.24 Aligned_cols=14 Identities=36% Similarity=0.589 Sum_probs=12.6
Q ss_pred CcEEEEcCCCCCcc
Q psy6862 193 SKIIVLTGAGVSVS 206 (315)
Q Consensus 193 k~IVVlTGAGISaa 206 (315)
++|++.+|||+|++
T Consensus 4 kkIll~Cg~G~sTS 17 (106)
T 1e2b_A 4 KHIYLFSSAGMSTS 17 (106)
T ss_dssp EEEEEECSSSTTTH
T ss_pred cEEEEECCCchhHH
Confidence 57999999999986
No 18
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=45.12 E-value=12 Score=32.32 Aligned_cols=29 Identities=7% Similarity=0.217 Sum_probs=24.4
Q ss_pred cccccccHHHH-HHHHHhCCcEEEEcCCCCC
Q psy6862 175 RLRHIGTFNDV-IHLLKTCSKIIVLTGAGVS 204 (315)
Q Consensus 175 kl~~~~tLe~l-~elI~~Ak~IVVlTGAGIS 204 (315)
+.....+++++ +++|++|++-||+.|. +.
T Consensus 17 ~~a~~~~i~~a~a~lI~~AkRPvIl~Gg-v~ 46 (174)
T 1ytl_A 17 KMATLLEKGKPVANMIKKAKRPLLIVGP-DM 46 (174)
T ss_dssp CCCEECCCHHHHHHHHHHCSSEEEEECS-CC
T ss_pred ccceeccHHHHHHHHHHcCCCCEEEECC-CC
Confidence 33455679999 9999999999999999 75
No 19
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=39.74 E-value=14 Score=30.90 Aligned_cols=29 Identities=21% Similarity=0.378 Sum_probs=23.0
Q ss_pred cccHHHHHHHHHhCCcEEEEcCCCCCccC
Q psy6862 179 IGTFNDVIHLLKTCSKIIVLTGAGVSVSC 207 (315)
Q Consensus 179 ~~tLe~l~elI~~Ak~IVVlTGAGISaaS 207 (315)
...+++++++|.+|++-|++.|.|-|...
T Consensus 31 ~~~i~~~~~~i~~a~~~I~i~G~G~S~~~ 59 (201)
T 3fxa_A 31 EEALVKTVEKIAECTGKIVVAGCGTSGVA 59 (201)
T ss_dssp HHHHHHHHHHHHHCSSCEEEECCTHHHHH
T ss_pred HHHHHHHHHHHHhcCCcEEEEEecHHHHH
Confidence 46899999999999645677888888543
No 20
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=33.32 E-value=27 Score=28.62 Aligned_cols=98 Identities=5% Similarity=0.008 Sum_probs=51.4
Q ss_pred ccccHHHHHHHHHhCCcEEEEcCCCCCccCCCCCcCCCchhhhccccCCCCCCChhhhcchHhhhcCChHHHHHHHHHc-
Q psy6862 178 HIGTFNDVIHLLKTCSKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFKQDPRPFFKFAREIY- 256 (315)
Q Consensus 178 ~~~tLe~l~elI~~Ak~IVVlTGAGISaaSGIPDFRs~~Gly~~l~~~f~~l~dP~emfd~~~F~~dP~~Fw~f~r~i~- 256 (315)
....+++++++|.+|++ |++.|.|-|...+. .|.- ...++.. +-. .+..++..+......+-
T Consensus 25 ~~~~l~~~~~~i~~a~~-I~i~G~G~S~~~a~-~~~~---~l~~~g~-------~~~-----~~~~~~~~~~~~~~~~~~ 87 (187)
T 3sho_A 25 QPEAIEAAVEAICRADH-VIVVGMGFSAAVAV-FLGH---GLNSLGI-------RTT-----VLTEGGSTLTITLANLRP 87 (187)
T ss_dssp CHHHHHHHHHHHHHCSE-EEEECCGGGHHHHH-HHHH---HHHHTTC-------CEE-----EECCCTHHHHHHHHTCCT
T ss_pred CHHHHHHHHHHHHhCCE-EEEEecCchHHHHH-HHHH---HHHhcCC-------CEE-----EecCCchhHHHHHhcCCC
Confidence 35689999999999975 56678887764332 1110 0011110 000 01112333433333221
Q ss_pred -------CCCCCCChHHHHHHHHHHcCCcceeeecCccchHhh
Q psy6862 257 -------PGQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQV 292 (315)
Q Consensus 257 -------~~~~~Pn~~H~aLa~Le~~Gkl~~VITQNIDgLhqk 292 (315)
...-.....-.+++.+.++|--.-.||.|-++-..+
T Consensus 88 ~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~ 130 (187)
T 3sho_A 88 TDLMIGVSVWRYLRDTVAALAGAAERGVPTMALTDSSVSPPAR 130 (187)
T ss_dssp TEEEEEECCSSCCHHHHHHHHHHHHTTCCEEEEESCTTSHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEeCCCCCcchh
Confidence 112234445666666667777667899988875443
No 21
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=32.22 E-value=12 Score=29.59 Aligned_cols=15 Identities=47% Similarity=0.589 Sum_probs=13.1
Q ss_pred CcEEEEcCCCCCccC
Q psy6862 193 SKIIVLTGAGVSVSC 207 (315)
Q Consensus 193 k~IVVlTGAGISaaS 207 (315)
++|++.+|+|++++.
T Consensus 22 kkIlvvC~sG~gTS~ 36 (113)
T 1tvm_A 22 RKIIVACGGAVATST 36 (113)
T ss_dssp EEEEEESCSCSSHHH
T ss_pred cEEEEECCCCHHHHH
Confidence 579999999999863
No 22
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=30.69 E-value=26 Score=34.43 Aligned_cols=27 Identities=22% Similarity=0.450 Sum_probs=23.6
Q ss_pred ccccHHHHHHHHHhCCcEEEEcCCCCC
Q psy6862 178 HIGTFNDVIHLLKTCSKIIVLTGAGVS 204 (315)
Q Consensus 178 ~~~tLe~l~elI~~Ak~IVVlTGAGIS 204 (315)
....+++++++|++|++.||+.|.|++
T Consensus 187 ~~~~i~~~~~~l~~A~rpvIl~G~g~~ 213 (549)
T 3eya_A 187 EEEELRKLAQLLRYSSNIALMCGSGCA 213 (549)
T ss_dssp CHHHHHHHHHHHHTCCSEEEEECGGGT
T ss_pred CHHHHHHHHHHHHhCCCcEEEECCCch
Confidence 345789999999999999999999975
No 23
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=28.34 E-value=25 Score=27.43 Aligned_cols=13 Identities=46% Similarity=0.828 Sum_probs=11.8
Q ss_pred cEEEEcCCCCCcc
Q psy6862 194 KIIVLTGAGVSVS 206 (315)
Q Consensus 194 ~IVVlTGAGISaa 206 (315)
+|++.+|+|+|++
T Consensus 6 kIlvvC~~G~~TS 18 (109)
T 2l2q_A 6 NILLVCGAGMSTS 18 (109)
T ss_dssp EEEEESSSSCSSC
T ss_pred EEEEECCChHhHH
Confidence 5999999999987
No 24
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=25.31 E-value=22 Score=29.21 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=21.0
Q ss_pred cccHHHHHHHHHhCCcEEEEcCCCCCcc
Q psy6862 179 IGTFNDVIHLLKTCSKIIVLTGAGVSVS 206 (315)
Q Consensus 179 ~~tLe~l~elI~~Ak~IVVlTGAGISaa 206 (315)
...+++++++|.+|++|+ +.|.|-|..
T Consensus 24 ~~~i~~~~~~i~~a~~I~-i~G~G~S~~ 50 (186)
T 1m3s_A 24 NEEADQLADHILSSHQIF-TAGAGRSGL 50 (186)
T ss_dssp HHHHHHHHHHHHHCSCEE-EECSHHHHH
T ss_pred HHHHHHHHHHHHcCCeEE-EEecCHHHH
Confidence 457899999999998755 568887754
No 25
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=24.46 E-value=38 Score=33.72 Aligned_cols=27 Identities=11% Similarity=0.299 Sum_probs=23.6
Q ss_pred ccccHHHHHHHHHhCCcEEEEcCCCCC
Q psy6862 178 HIGTFNDVIHLLKTCSKIIVLTGAGVS 204 (315)
Q Consensus 178 ~~~tLe~l~elI~~Ak~IVVlTGAGIS 204 (315)
....+++++++|++|++.||+.|.|++
T Consensus 198 ~~~~i~~~~~~l~~A~rPvIl~G~g~~ 224 (603)
T 4feg_A 198 DVQAVTRLTQTLLAAERPLIYYGIGAR 224 (603)
T ss_dssp CHHHHHHHHHHHHHCSSEEEEECGGGT
T ss_pred CHHHHHHHHHHHhcCCCeEEEECCCch
Confidence 345789999999999999999999984
No 26
>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A
Probab=23.86 E-value=38 Score=31.34 Aligned_cols=28 Identities=21% Similarity=0.490 Sum_probs=23.9
Q ss_pred cccHHHHHHHHHhCCcEEEEcCCCCCcc
Q psy6862 179 IGTFNDVIHLLKTCSKIIVLTGAGVSVS 206 (315)
Q Consensus 179 ~~tLe~l~elI~~Ak~IVVlTGAGISaa 206 (315)
...++.|+++++.|++|.|+.|+||..+
T Consensus 155 ~~g~~~L~~Lv~~a~~i~Im~GgGv~~~ 182 (256)
T 1twd_A 155 LQGLSKIMELIAHRDAPIIMAGAGVRAE 182 (256)
T ss_dssp TTTHHHHHHHHTSSSCCEEEEESSCCTT
T ss_pred HHHHHHHHHHHHhhCCcEEEecCCcCHH
Confidence 4578888999988889999999999864
No 27
>1vkr_A Mannitol-specific PTS system enzyme iiabc compone; phosphotransferase, transferase, kinase, sugar transport; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1vrv_A* 2few_B*
Probab=23.73 E-value=18 Score=29.40 Aligned_cols=17 Identities=41% Similarity=0.495 Sum_probs=14.2
Q ss_pred hCCcEEEEcCCCCCccC
Q psy6862 191 TCSKIIVLTGAGVSVSC 207 (315)
Q Consensus 191 ~Ak~IVVlTGAGISaaS 207 (315)
.-++|++.+|+|++++.
T Consensus 12 ~~kkIlvVC~sGmgTS~ 28 (125)
T 1vkr_A 12 HVRKIIVACDAGMGSSA 28 (125)
T ss_dssp CCCEEEECCSSSSHHHH
T ss_pred cccEEEEECCCcHHHHH
Confidence 34689999999999874
No 28
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=23.72 E-value=47 Score=33.04 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=23.4
Q ss_pred cccHHHHHHHHHhCCcEEEEcCCCCC
Q psy6862 179 IGTFNDVIHLLKTCSKIIVLTGAGVS 204 (315)
Q Consensus 179 ~~tLe~l~elI~~Ak~IVVlTGAGIS 204 (315)
...+++++++|++|++.||+.|.|..
T Consensus 230 ~~~i~~~~~~l~~A~rPvIl~G~g~~ 255 (604)
T 2x7j_A 230 RESLSDVAEMLAEAEKGMIVCGELHS 255 (604)
T ss_dssp TGGGHHHHHHHHHCSSEEEEECCCCC
T ss_pred hhhHHHHHHHHhhcCCeEEEECCCCc
Confidence 45789999999999999999999984
No 29
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=23.55 E-value=32 Score=29.72 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=22.5
Q ss_pred ccHHHHHHHHHhCCcEEEEcCCCCCcc
Q psy6862 180 GTFNDVIHLLKTCSKIIVLTGAGVSVS 206 (315)
Q Consensus 180 ~tLe~l~elI~~Ak~IVVlTGAGISaa 206 (315)
.+.+++.+++++++.-||++|||+++.
T Consensus 38 R~p~~~~~~~~~a~~~ViIa~AG~aa~ 64 (157)
T 2ywx_A 38 RTPELVEEIVKNSKADVFIAIAGLAAH 64 (157)
T ss_dssp TCHHHHHHHHHHCCCSEEEEEEESSCC
T ss_pred CCHHHHHHHHHhcCCCEEEEEcCchhh
Confidence 467788888888877899999999865
No 30
>1x4q_A U4/U6 small nuclear ribonucleoprotein PRP3; PWI domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.78 E-value=72 Score=24.86 Aligned_cols=46 Identities=9% Similarity=0.072 Sum_probs=31.9
Q ss_pred hHHHHHHHhhCCCCHHHHHHHhhcCCCCCCCCCCh--HHHHHHHHHhhcCc
Q psy6862 122 SLLWIRKQMANGINPRDVLSHILGADARIPDHIDD--QTAWRLVLNMICEP 170 (315)
Q Consensus 122 ~~~~~~~~~~~g~~~~~il~~~~~~~~~~p~~~~~--~~~~~~l~~~~~~~ 170 (315)
-+.||..++..+.+|+.+...|-++ +-.+... ..+|++|.+....+
T Consensus 37 lVd~i~~~l~~~~dpk~l~~~L~~f---Ld~~a~~Fv~eLW~lL~~aq~s~ 84 (92)
T 1x4q_A 37 VVTAALNCVGKGMDKKKAADHLKPF---LDDSTLRFVDKLFEAVEEGRSSR 84 (92)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTTT---TGGGTHHHHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHHhCC
Confidence 3678888888999999999988553 3222211 36899998866544
No 31
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=22.60 E-value=43 Score=33.16 Aligned_cols=26 Identities=15% Similarity=0.399 Sum_probs=23.0
Q ss_pred cccHHHHHHHHHhCCcEEEEcCCCCC
Q psy6862 179 IGTFNDVIHLLKTCSKIIVLTGAGVS 204 (315)
Q Consensus 179 ~~tLe~l~elI~~Ak~IVVlTGAGIS 204 (315)
...+++++++|++|++.||++|.|+.
T Consensus 201 ~~~i~~~~~~l~~a~rpvIl~G~g~~ 226 (590)
T 1ybh_A 201 DSHLEQIVRLISESKKPVLYVGGGCL 226 (590)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECGGGT
T ss_pred HHHHHHHHHHHHhCCCcEEEECcccc
Confidence 35689999999999999999999975
No 32
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=22.33 E-value=52 Score=32.28 Aligned_cols=25 Identities=16% Similarity=0.388 Sum_probs=22.8
Q ss_pred ccHHHHHHHHHhCCcEEEEcCCCCC
Q psy6862 180 GTFNDVIHLLKTCSKIIVLTGAGVS 204 (315)
Q Consensus 180 ~tLe~l~elI~~Ak~IVVlTGAGIS 204 (315)
..+++++++|++|++.||+.|.|+.
T Consensus 197 ~~i~~~~~~l~~a~rpvi~~G~g~~ 221 (566)
T 2vbi_A 197 AAVDATVALLEKSASPVMLLGSKLR 221 (566)
T ss_dssp HHHHHHHHHHHTCSCEEEEECTTTT
T ss_pred HHHHHHHHHHHhCCCCEEEECcCcc
Confidence 4688999999999999999999985
No 33
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=22.03 E-value=22 Score=28.31 Aligned_cols=16 Identities=19% Similarity=0.173 Sum_probs=13.1
Q ss_pred CCcEEEEcCCCCCccC
Q psy6862 192 CSKIIVLTGAGVSVSC 207 (315)
Q Consensus 192 Ak~IVVlTGAGISaaS 207 (315)
-.+|+++++||+|++.
T Consensus 6 ~mkIlL~C~aGmSTsl 21 (108)
T 3nbm_A 6 ELKVLVLCAGSGTSAQ 21 (108)
T ss_dssp CEEEEEEESSSSHHHH
T ss_pred CceEEEECCCCCCHHH
Confidence 3579999999999753
No 34
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=21.73 E-value=52 Score=32.33 Aligned_cols=25 Identities=16% Similarity=0.434 Sum_probs=22.9
Q ss_pred ccHHHHHHHHHhCCcEEEEcCCCCC
Q psy6862 180 GTFNDVIHLLKTCSKIIVLTGAGVS 204 (315)
Q Consensus 180 ~tLe~l~elI~~Ak~IVVlTGAGIS 204 (315)
..+++++++|++|++.||+.|.|+.
T Consensus 197 ~~i~~~~~~l~~a~rpvil~G~g~~ 221 (568)
T 2wvg_A 197 AAVEETLKFIANRDKVAVLVGSKLR 221 (568)
T ss_dssp HHHHHHHHHHTTCCCEEEEECTTTT
T ss_pred HHHHHHHHHHHhCCCCEEEECcccc
Confidence 5689999999999999999999985
No 35
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=21.01 E-value=36 Score=27.75 Aligned_cols=29 Identities=21% Similarity=0.274 Sum_probs=22.0
Q ss_pred ccccHHHHHHHHHhCCcEEEEcCCCCCccC
Q psy6862 178 HIGTFNDVIHLLKTCSKIIVLTGAGVSVSC 207 (315)
Q Consensus 178 ~~~tLe~l~elI~~Ak~IVVlTGAGISaaS 207 (315)
....+++++++|.++++|+ +.|.|-|...
T Consensus 26 ~~~~i~~~~~~i~~a~~I~-i~G~G~S~~~ 54 (180)
T 1jeo_A 26 WKNKLDSLIDRIIKAKKIF-IFGVGRSGYI 54 (180)
T ss_dssp HHHHHHHHHHHHHHCSSEE-EECCHHHHHH
T ss_pred CHHHHHHHHHHHHhCCEEE-EEeecHHHHH
Confidence 3467899999999998765 5688877543
No 36
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=20.83 E-value=49 Score=32.62 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=22.9
Q ss_pred cccHHHHHHHHHhCCcEEEEcCCCCC
Q psy6862 179 IGTFNDVIHLLKTCSKIIVLTGAGVS 204 (315)
Q Consensus 179 ~~tLe~l~elI~~Ak~IVVlTGAGIS 204 (315)
...+++++++|++|++.||+.|.|..
T Consensus 194 ~~~i~~~~~~l~~a~rpvil~G~g~~ 219 (566)
T 1ozh_A 194 DDAIDQVAKLIAQAKNPIFLLGLMAS 219 (566)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECGGGG
T ss_pred HHHHHHHHHHHHcCCCeEEEECCCcc
Confidence 35689999999999999999999974
No 37
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=20.49 E-value=34 Score=33.59 Aligned_cols=27 Identities=19% Similarity=0.389 Sum_probs=23.3
Q ss_pred ccccHHHHHHHHHhCCcEEEEcCCCCC
Q psy6862 178 HIGTFNDVIHLLKTCSKIIVLTGAGVS 204 (315)
Q Consensus 178 ~~~tLe~l~elI~~Ak~IVVlTGAGIS 204 (315)
....+++++++|++|++.||++|.|+.
T Consensus 197 ~~~~i~~~~~~l~~a~rpvIl~G~g~~ 223 (564)
T 2q28_A 197 CPKSVTSAISLLAKAERPLIILGKGAA 223 (564)
T ss_dssp CHHHHHHHHHHHHHCSSEEEEECHHHH
T ss_pred CHHHHHHHHHHHHcCCCcEEEECcccc
Confidence 345689999999999999999999975
No 38
>2a3n_A Putative glucosamine-fructose-6-phosphate aminotr; structural genomics, joint center for structural genomics; HET: MSE; 1.23A {Salmonella typhimurium}
Probab=20.43 E-value=97 Score=28.62 Aligned_cols=46 Identities=11% Similarity=0.107 Sum_probs=31.7
Q ss_pred CChHHHHHHHHHhhcCccccccccccccHHHHHHHHHh--CCcEEEEcCCCCCccCCC
Q psy6862 154 IDDQTAWRLVLNMICEPRRRQRLRHIGTFNDVIHLLKT--CSKIIVLTGAGVSVSCGI 209 (315)
Q Consensus 154 ~~~~~~~~~l~~~~~~~~~r~kl~~~~tLe~l~elI~~--Ak~IVVlTGAGISaaSGI 209 (315)
.+.+.+.+.|.+.+. ....+++++++|.+ +++|+ ++|.|-|...|.
T Consensus 23 f~~~~~~~~i~~t~~---------~~~~i~~~~~~i~~~~~~~I~-i~G~G~S~~~a~ 70 (355)
T 2a3n_A 23 FNQDEYLTSAREIIA---------ARQKAEQVADEIYQAGFSSLF-FASVGGSLAPMM 70 (355)
T ss_dssp CCHHHHHHHHHHHHT---------THHHHHHHHHHHHHHCCSCEE-EEECGGGHHHHH
T ss_pred cCHHHHHHHHHHHHh---------hHHHHHHHHHHHHhCCCCEEE-EEEccHHHHHHH
Confidence 355566666655443 34678999999998 77766 569998876554
No 39
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=20.18 E-value=36 Score=33.49 Aligned_cols=27 Identities=15% Similarity=0.374 Sum_probs=23.2
Q ss_pred ccccHHHHHHHHHhCCcEEEEcCCCCC
Q psy6862 178 HIGTFNDVIHLLKTCSKIIVLTGAGVS 204 (315)
Q Consensus 178 ~~~tLe~l~elI~~Ak~IVVlTGAGIS 204 (315)
....+++++++|++|++.||++|.|+.
T Consensus 199 ~~~~i~~~~~~l~~a~rpvIl~G~g~~ 225 (568)
T 2c31_A 199 AEDAIARAADLIKNAKRPVIMLGKGAA 225 (568)
T ss_dssp CHHHHHHHHHHHHTCSSEEEEECHHHH
T ss_pred CHHHHHHHHHHHHhCCCCEEEECcccc
Confidence 345789999999999999999999875
Done!