RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6862
(315 letters)
>gnl|CDD|238699 cd01408, SIRT1, SIRT1: Eukaryotic group (class1) which includes
human sirtuins SIRT1-3 and yeast Hst1-4; and are members
of the SIR2 family of proteins, silent information
regulator 2 (Sir2) enzymes which catalyze NAD+-dependent
protein/histone deacetylation. Sir2 proteins have been
shown to regulate gene silencing, DNA repair, and life
span. The most-studied function, gene silencing,
involves the inactivation of chromosome domains
containing key regulatory genes by packaging them into a
specialized chromatin structure that is inaccessible to
DNA-binding proteins. The nuclear SIRT1 has been shown
to target the p53 tumor suppressor protein for
deacetylation to suppress DNA damage, and the
cytoplasmic SIRT2 homolog has been shown to target
alpha-tubulin for deacetylation for the maintenance of
cell integrity.
Length = 235
Score = 204 bits (520), Expect = 6e-65
Identities = 70/112 (62%), Positives = 88/112 (78%), Gaps = 5/112 (4%)
Query: 194 KIIVLTGAGVSVSCGIPDFRSRD-GIYSRLAVDFPNLPDPQAMFDINYFKQDPRPFFKFA 252
KI+VL GAG+S S GIPDFRS G+Y+ LA NLP P+AMFDI+YF+++PRPF+ A
Sbjct: 2 KIVVLVGAGISTSAGIPDFRSPGTGLYANLARY--NLPYPEAMFDISYFRKNPRPFYALA 59
Query: 253 REIYPGQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGIEN--VIECH 302
+E+YPGQFKPS H FIK+LE G LLRNY+QNIDTLE+VAG+ + +IE H
Sbjct: 60 KELYPGQFKPSVAHYFIKLLEDKGLLLRNYTQNIDTLERVAGVPDDRIIEAH 111
>gnl|CDD|216902 pfam02146, SIR2, Sir2 family. This region is characteristic of
Silent information regulator 2 (Sir2) proteins, or
sirtuins. These are protein deacetylases that depend on
nicotine adenine dinucleotide (NAD). They are found in
many subcellular locations, including the nucleus,
cytoplasm and mitochondria. Eukaryotic forms play in
important role in the regulation of transcriptional
repression. Moreover, they are involved in microtubule
organisation and DNA damage repair processes.
Length = 177
Score = 166 bits (423), Expect = 4e-51
Identities = 51/103 (49%), Positives = 65/103 (63%), Gaps = 4/103 (3%)
Query: 200 GAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFKQDPRPFFKFAREIYPGQ 259
GAG+S GIPDFRS DG+Y++LA + L P+A F Y DP F+ ARE+ PG
Sbjct: 1 GAGISTESGIPDFRSDDGLYAKLAKE--ELASPEAFFSNPYLVWDP--FYNIARELLPGP 56
Query: 260 FKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECH 302
+P+P H FI LE GKLLR +QNID L + AG + V+E H
Sbjct: 57 AQPNPAHYFIAELEDKGKLLRLITQNIDGLHERAGSKKVVELH 99
>gnl|CDD|238698 cd01407, SIR2-fam, SIR2 family of proteins includes silent
information regulator 2 (Sir2) enzymes which catalyze
NAD+-dependent protein/histone deacetylation, where the
acetyl group from the lysine epsilon-amino group is
transferred to the ADP-ribose moiety of NAD+, producing
nicotinamide and the novel metabolite
O-acetyl-ADP-ribose. Sir2 proteins, also known as
sirtuins, are found in all eukaryotes and many archaea
and prokaryotes and have been shown to regulate gene
silencing, DNA repair, metabolic enzymes, and life span.
The most-studied function, gene silencing, involves the
inactivation of chromosome domains containing key
regulatory genes by packaging them into a specialized
chromatin structure that is inaccessible to DNA-binding
proteins. The oligomerization state of Sir2 appears to
be organism-dependent, sometimes occurring as a monomer
and sometimes as a multimer.
Length = 218
Score = 155 bits (395), Expect = 2e-46
Identities = 49/110 (44%), Positives = 64/110 (58%), Gaps = 8/110 (7%)
Query: 194 KIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFKQDPRPFFKFAR 253
+I+VLTGAG+S GIPDFRS G+++RL + F F++DP F+ F R
Sbjct: 2 RIVVLTGAGISTESGIPDFRSPGGLWARLDPEEL-------AFSPEAFRRDPELFWGFYR 54
Query: 254 EIY-PGQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECH 302
E P +P+P HR + LER GKL R +QN+D L Q AG VIE H
Sbjct: 55 ERRYPLNAQPNPAHRALAELERKGKLKRVITQNVDGLHQRAGSPKVIELH 104
>gnl|CDD|223915 COG0846, SIR2, NAD-dependent protein deacetylases, SIR2 family
[Transcription].
Length = 250
Score = 140 bits (356), Expect = 3e-40
Identities = 49/123 (39%), Positives = 69/123 (56%), Gaps = 9/123 (7%)
Query: 182 FNDVIHLLKTCSKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYF 241
+V LK +I+VLTGAG+S GIPDFRS+DG++S + DP+ + + F
Sbjct: 2 LEEVAQALKEAKRIVVLTGAGISAESGIPDFRSKDGLWS-------DKYDPEDLASPSGF 54
Query: 242 KQDPRPFFKFAREIYPG--QFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGIENVI 299
++DP + F E +P+ H + LE GKLLR +QNID L + AG +NVI
Sbjct: 55 RRDPELVWDFYSERLRLLYLAQPNKAHYALAELEDKGKLLRIITQNIDGLHERAGSKNVI 114
Query: 300 ECH 302
E H
Sbjct: 115 ELH 117
>gnl|CDD|238184 cd00296, SIR2, SIR2 superfamily of proteins includes silent
information regulator 2 (Sir2) enzymes which catalyze
NAD+-dependent protein/histone deacetylation, where the
acetyl group from the lysine epsilon-amino group is
transferred to the ADP-ribose moiety of NAD+, producing
nicotinamide and the novel metabolite
O-acetyl-ADP-ribose. Sir2 proteins, also known as
sirtuins, are found in all eukaryotes and many archaea
and prokaryotes and have been shown to regulate gene
silencing, DNA repair, metabolic enzymes, and life span.
The most-studied function, gene silencing, involves the
inactivation of chromosome domains containing key
regulatory genes by packaging them into a specialized
chromatin structure that is inaccessible to DNA-binding
proteins. The oligomerization state of Sir2 appears to
be organism-dependent, sometimes occurring as a monomer
and sometimes as a multimer. Also included in this
superfamily is a group of uncharacterized Sir2-like
proteins which lack certain key catalytic residues and
conserved zinc binding cysteines.
Length = 222
Score = 133 bits (337), Expect = 9e-38
Identities = 45/114 (39%), Positives = 62/114 (54%), Gaps = 12/114 (10%)
Query: 194 KIIVLTGAGVSVSCGIPDFRSRD-GIYSRLAVDFPNLPDPQAMFDINYFKQDPRPFFKFA 252
+++V TGAG+S GIPDFR G+++RL + F F++DP F+ F
Sbjct: 2 RVVVFTGAGISTESGIPDFRGLGTGLWTRLDPEEL-------AFSPEAFRRDPELFWLFY 54
Query: 253 REIY--PGQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAG--IENVIECH 302
+E P KP+P HR + LER GKL R +QN+D L + AG VIE H
Sbjct: 55 KERRYTPLDAKPNPAHRALAELERKGKLKRIITQNVDGLHERAGSRRNRVIELH 108
>gnl|CDD|238704 cd01413, SIR2_Af2, SIR2_Af2: Archaeal and prokaryotic group which
includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus
solfataricus ssSir2, and several bacterial homologs; and
are members of the SIR2 family of proteins, silent
information regulator 2 (Sir2) enzymes which catalyze
NAD+-dependent protein/histone deacetylation. Sir2
proteins have been shown to regulate gene silencing, DNA
repair, metabolic enzymes, and life span. The Sir2
homolog from the archaea Sulfolobus solftaricus
deacetylates the non-specific DNA protein Alba to
mediate transcription repression.
Length = 222
Score = 116 bits (292), Expect = 3e-31
Identities = 48/116 (41%), Positives = 69/116 (59%), Gaps = 10/116 (8%)
Query: 189 LKTCSKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFKQDPRPF 248
L K +VLTGAG+S GIPDFRS DG++ + DP+ + I+YF ++P F
Sbjct: 1 LTKSRKTVVLTGAGISTESGIPDFRSPDGLWKK--------YDPEEVASIDYFYRNPEEF 52
Query: 249 FKFAREIYPG--QFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECH 302
++F +EI G + +P+ H F+ LE+ G + +QNID L Q AG +NVIE H
Sbjct: 53 WRFYKEIILGLLEAQPNKAHYFLAELEKQGIIKAIITQNIDGLHQRAGSKNVIELH 108
>gnl|CDD|172627 PRK14138, PRK14138, NAD-dependent deacetylase; Provisional.
Length = 244
Score = 107 bits (269), Expect = 1e-27
Identities = 48/121 (39%), Positives = 66/121 (54%), Gaps = 11/121 (9%)
Query: 184 DVIHLLKTCSKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFKQ 243
+ + LL + LTGAG+S GIPDFR GIY + PQ +FDI++F
Sbjct: 3 EFLELLNESRLTVTLTGAGISTPSGIPDFRGPQGIYKKY---------PQNVFDIDFFYS 53
Query: 244 DPRPFFKFARE-IYP-GQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIEC 301
P F++FA+E I+P + KP+ H + LE G + +QNID L Q AG + VIE
Sbjct: 54 HPEEFYRFAKEGIFPMLEAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQKAGSKKVIEL 113
Query: 302 H 302
H
Sbjct: 114 H 114
>gnl|CDD|234777 PRK00481, PRK00481, NAD-dependent deacetylase; Provisional.
Length = 242
Score = 106 bits (268), Expect = 2e-27
Identities = 45/122 (36%), Positives = 65/122 (53%), Gaps = 10/122 (8%)
Query: 183 NDVIHLLKTCSKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFK 242
++ +L +I+VLTGAG+S GIPDFRS +G++ P+ + F
Sbjct: 4 EELAEILDKAKRIVVLTGAGISAESGIPDFRSANGLWEEH--------RPEDVASPEGFA 55
Query: 243 QDPRPFFKF--AREIYPGQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIE 300
+DP +KF R KP+ HR + LE+ GKL+ +QNID L + AG +NVIE
Sbjct: 56 RDPELVWKFYNERRRQLLDAKPNAAHRALAELEKLGKLVTVITQNIDGLHERAGSKNVIE 115
Query: 301 CH 302
H
Sbjct: 116 LH 117
>gnl|CDD|185600 PTZ00410, PTZ00410, NAD-dependent SIR2; Provisional.
Length = 349
Score = 104 bits (261), Expect = 9e-26
Identities = 50/118 (42%), Positives = 73/118 (61%), Gaps = 7/118 (5%)
Query: 190 KTCSKIIVLTGAGVSVSCGIPDFRSRD-GIYSRLAVDFPNLPDPQAMFDINYFKQDPRPF 248
+KI+V+ GAG+SV+ GIPDFRS GIY++L NL P F + ++ P F
Sbjct: 27 NNVTKILVMVGAGISVAAGIPDFRSPHTGIYAKLGK--YNLNSPTDAFSLTLLREKPEVF 84
Query: 249 FKFARE--IYPGQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGI--ENVIECH 302
+ ARE ++PG F+P+ H FI++L G+LLR +QNID LE+ AG+ ++E H
Sbjct: 85 YSIAREMDLWPGHFQPTAVHHFIRLLADEGRLLRCCTQNIDGLERAAGVPPSLLVEAH 142
>gnl|CDD|238702 cd01411, SIR2H, SIR2H: Uncharacterized prokaryotic Sir2 homologs
from several gram positive bacterial species and
Fusobacteria; and are members of the SIR2 family of
proteins, silent information regulator 2 (Sir2) enzymes
which catalyze NAD+-dependent protein/histone
deacetylation. Sir2 proteins have been shown to regulate
gene silencing, DNA repair, metabolic enzymes, and life
span.
Length = 225
Score = 92.8 bits (231), Expect = 2e-22
Identities = 43/119 (36%), Positives = 71/119 (59%), Gaps = 9/119 (7%)
Query: 186 IHLLKTCSKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFKQDP 245
H+LK +I+ TGAGVS + GIPD+RS++G+Y+ + P+ + ++ +++P
Sbjct: 2 QHILKNAKRIVFFTGAGVSTASGIPDYRSKNGLYNEIYKY-----SPEYLLSHDFLEREP 56
Query: 246 RPFFKFARE--IYPGQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECH 302
F++F +E +P KP+ H+ + LE+ G L +QNID L Q AG +NV+E H
Sbjct: 57 EKFYQFVKENLYFPDA-KPNIIHQKMAELEKMG-LKAVITQNIDGLHQKAGSKNVVEFH 113
>gnl|CDD|238703 cd01412, SIRT5_Af1_CobB, SIRT5_Af1_CobB: Eukaryotic, archaeal and
prokaryotic group (class3) which includes human sirtuin
SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli
CobB; and are members of the SIR2 family of proteins,
silent information regulator 2 (Sir2) enzymes which
catalyze NAD+-dependent protein/histone deacetylation.
Sir2 proteins have been shown to regulate gene
silencing, DNA repair, metabolic enzymes, and life span.
CobB is a bacterial sirtuin that deacetylates acetyl-CoA
synthetase at an active site lysine to stimulate its
enzymatic activity. .
Length = 224
Score = 73.0 bits (180), Expect = 4e-15
Identities = 41/112 (36%), Positives = 60/112 (53%), Gaps = 12/112 (10%)
Query: 194 KIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFKQDPRP---FFK 250
+++VLTGAG+S GIP FR DG+++R D L P+A F +DP F+
Sbjct: 2 RVVVLTGAGISAESGIPTFRDADGLWAR--FDPEELATPEA------FARDPELVWEFYN 53
Query: 251 FAREIYPGQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECH 302
+ R + +P+P H + LER + +QN+D L + AG NVIE H
Sbjct: 54 WRRRKA-LRAQPNPAHLALAELERRLPNVLLITQNVDGLHERAGSRNVIELH 104
>gnl|CDD|238701 cd01410, SIRT7, SIRT7: Eukaryotic and prokaryotic group (class4)
which includes human sirtuin SIRT6, SIRT7, and several
bacterial homologs; and are members of the SIR2 family
of proteins, silent information regulator 2 (Sir2)
enzymes which catalyze NAD+-dependent protein/histone
deacetylation. Sir2 proteins have been shown to regulate
gene silencing, DNA repair, metabolic enzymes, and life
span.
Length = 206
Score = 71.9 bits (177), Expect = 5e-15
Identities = 34/112 (30%), Positives = 47/112 (41%), Gaps = 24/112 (21%)
Query: 193 SKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFKQDPRPFFKFA 252
++V TGAG+S S GIPDFR +G+++ L D F A
Sbjct: 1 KHLVVFTGAGISTSAGIPDFRGPNGVWTLLPED-KGRRRFSWRFR-------------RA 46
Query: 253 REIYPGQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGI--ENVIECH 302
P+ H + LER G L SQN+D L +G+ E + E H
Sbjct: 47 E--------PTLTHMALVELERAGLLKFVISQNVDGLHLRSGLPREKLSELH 90
>gnl|CDD|238700 cd01409, SIRT4, SIRT4: Eukaryotic and prokaryotic group (class2)
which includes human sirtuin SIRT4 and several bacterial
homologs; and are members of the SIR2 family of
proteins, silent information regulator 2 (Sir2) enzymes
which catalyze NAD+-dependent protein/histone
deacetylation. Sir2 proteins have been shown to regulate
gene silencing, DNA repair, metabolic enzymes, and life
span.
Length = 260
Score = 72.3 bits (178), Expect = 1e-14
Identities = 41/127 (32%), Positives = 59/127 (46%), Gaps = 29/127 (22%)
Query: 188 LLKTCSKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINY--FKQDP 245
+ +++VLTGAG+S GIPD+RS G+YSR P + + F + P
Sbjct: 4 FVARSRRLLVLTGAGISTESGIPDYRSEGGLYSRTFR--P----------MTHQEFMRSP 51
Query: 246 RPFFKFAREIY--------P--GQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGI 295
AR+ Y P +P+ HR + LE G+L +QN+D L AG
Sbjct: 52 A-----ARQRYWARSFVGWPRFSAAQPNAAHRALAALEAAGRLHGLITQNVDGLHTKAGS 106
Query: 296 ENVIECH 302
NV+E H
Sbjct: 107 RNVVELH 113
>gnl|CDD|173599 PTZ00409, PTZ00409, Sir2 (Silent Information Regulator) protein;
Provisional.
Length = 271
Score = 65.7 bits (160), Expect = 2e-12
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 12/133 (9%)
Query: 181 TFNDVIHLLKTCSKIIVLTGAGVSVSCGIPDFR-SRDGIYSRLAVDFPNLPDPQAMFDIN 239
T D+ +++ C ++ LTG+G S IP FR I+S+ DP+ I
Sbjct: 17 TLEDLADMIRKCKYVVALTGSGTSAESNIPSFRGPSSSIWSKY--------DPKIYGTIW 68
Query: 240 YFKQDPRPFFKFAREIYPG-QFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGIENV 298
F + P ++ R+I + + +P H + LE G L +QN+D L + +G V
Sbjct: 69 GFWKYPEKIWEVIRDISSDYEIELNPGHVALSTLESLGYLKFVVTQNVDGLHEESGNTKV 128
Query: 299 IECHDWV--GVCR 309
I H V C
Sbjct: 129 IPLHGSVFEARCC 141
>gnl|CDD|235415 PRK05333, PRK05333, NAD-dependent deacetylase; Provisional.
Length = 285
Score = 61.6 bits (150), Expect = 6e-11
Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 16/115 (13%)
Query: 193 SKIIVLTGAGVSVSCGIPDFRSRDGIYSRLA-VDFPNLPDPQAMFDINYFKQDPRPFFKF 251
++ VLTGAG+S GIPD+R R+G + R + + QA + ++ +
Sbjct: 20 PRLFVLTGAGISTDSGIPDYRDRNGQWKRSPPITY------QAFMGSDAARRR-----YW 68
Query: 252 AREI--YP--GQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECH 302
AR + +P G+ +P+ H + L G++ R +QN+D L Q AG +VIE H
Sbjct: 69 ARSMVGWPVFGRAQPNAAHHALARLGAAGRIERLVTQNVDGLHQRAGSRDVIELH 123
>gnl|CDD|240405 PTZ00408, PTZ00408, NAD-dependent deacetylase; Provisional.
Length = 242
Score = 56.4 bits (136), Expect = 3e-09
Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 14/120 (11%)
Query: 189 LKTCSKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFKQDPRPF 248
+K C I +LTGAG+S GI FR +G++ V+ PD F ++P
Sbjct: 1 MKACRCITILTGAGISAESGISTFRDGNGLWENHRVEDVATPDA--------FLRNPALV 52
Query: 249 FKF----AREIYPGQFKPSPCHRFIKMLERH--GKLLRNYSQNIDTLEQVAGIENVIECH 302
+F R + KP+ H + LER G + +QN+D L + AG +V+ H
Sbjct: 53 QRFYNERRRALLSSSVKPNKAHFALAKLEREYRGGKVVVVTQNVDNLHERAGSTHVLHMH 112
>gnl|CDD|218003 pfam04281, Tom22, Mitochondrial import receptor subunit Tom22. The
mitochondrial protein translocase family, which is
responsible for movement of nuclear encoded pre-proteins
into mitochondria, is very complex with at least 19
components. These proteins include several chaperone
proteins, four proteins of the outer membrane
translocase (Tom) import receptor, five proteins of the
Tom channel complex, five proteins of the inner membrane
translocase (Tim) and three "motor" proteins. This
family represents the Tom22 proteins. The N terminal
region of Tom22 has been shown to have chaperone-like
activity, and the C terminal region faces the
intermembrane face.
Length = 136
Score = 34.5 bits (80), Expect = 0.020
Identities = 20/81 (24%), Positives = 27/81 (33%), Gaps = 15/81 (18%)
Query: 61 PPTEEQLEDLVEPLDLPEHDTSTSRDNDDEDDVSST-----VSNLSDI----------SG 105
P + E D E DT T D D+ D + + L DI S
Sbjct: 15 KPAAPKNLAQEESDDDDEDDTDTDSDISDDSDFENETLYDRIVALKDIVPPTTRRKISSK 74
Query: 106 FSDISGLDWKSGNFSGSLLWI 126
S + +F G LLW+
Sbjct: 75 VSTTTSFFKSGFSFGGKLLWV 95
>gnl|CDD|238697 cd01406, SIR2-like, Sir2-like: Prokaryotic group of uncharacterized
Sir2-like proteins which lack certain key catalytic
residues and conserved zinc binding cysteines; and are
members of the SIR2 superfamily of proteins, silent
information regulator 2 (Sir2) enzymes which catalyze
NAD+-dependent protein/histone deacetylation.
Length = 242
Score = 35.1 bits (81), Expect = 0.033
Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 27/117 (23%)
Query: 194 KIIVLTGAGVSVSCGIPDFRS-RDGIYSRLAVDFP-------NLPDPQAMFDINYFKQ-- 243
++++ GAGVSVS G+PD+++ D I S L ++ + D + ++ K+
Sbjct: 2 RVVIFVGAGVSVSSGLPDWKTLLDEIASELGLEIDGYSVEAKDENDYLELAEL-LEKEFG 60
Query: 244 ------DPRPFFKFAREIYPGQFKPSPCHRFIKMLERHGKLLR-----NYSQNIDTL 289
+ K + F+PSP H + L + + NY + ++T
Sbjct: 61 TIGIKINAVLEEKTRPD-----FEPSPLHELLLRLFINNEGDVIIITTNYDRLLETA 112
>gnl|CDD|132435 TIGR03394, indol_phenyl_DC, indolepyruvate/phenylpyruvate
decarboxylase, Azospirillum family. A family of closely
related, thiamine pyrophosphate-dependent enzymes
includes indolepyruvate decarboxylase (EC 4.1.1.74),
phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate
decarboxylase (EC 4.1.1.1), branched-chain
alpha-ketoacid decarboxylase, etc.. Members of this
group of homologs may overlap in specificity. This model
represents a clade that includes a Azospirillum
brasilense member active as both phenylpyruvate
decarboxylase and indolepyruvate decarboxylase.
Length = 535
Score = 33.7 bits (77), Expect = 0.12
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 33 GGCGELTTPIILTMPEDLADLPCSPVPTPPTEE 65
G EL+ P+ L +P D+ + PVP P
Sbjct: 149 GSARELSRPVYLEIPRDMVNAEVEPVPDDPAWP 181
>gnl|CDD|146962 pfam04574, DUF592, Protein of unknown function (DUF592). This
region is found in some SIR2 family proteins
(pfam02146).
Length = 153
Score = 32.4 bits (74), Expect = 0.12
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 173 RQRLRHIGTFNDVIHLLKTCSKIIVLT 199
R RL + T + + LK KI+VLT
Sbjct: 127 RLRLPNFYTIDHFVDKLKKAKKILVLT 153
>gnl|CDD|240406 PTZ00411, PTZ00411, transaldolase-like protein; Provisional.
Length = 333
Score = 32.4 bits (74), Expect = 0.30
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 34 GCGELTTPIILTMPEDLADLPCSPVPTPPTEEQLEDLVEPLDLPEHDTSTSR 85
GC +LT L E+LA+ PV E+L + E LPE R
Sbjct: 248 GCDKLTISPKLL--EELANTEDGPVERKLDPEKLTEDTE--KLPELTEKEFR 295
>gnl|CDD|205990 pfam13817, DDE_Tnp_IS66_C, IS66 C-terminal element.
Length = 39
Score = 27.8 bits (63), Expect = 0.66
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 7/35 (20%)
Query: 131 ANGINPRDVLSHILGADARIPDH----IDDQTAWR 161
NG++P L+ +L RIPDH ID+ W
Sbjct: 8 LNGVDPEAYLADVL---TRIPDHPISRIDELLPWN 39
>gnl|CDD|192980 pfam12304, BCLP, Beta-casein like protein. This protein is found
in eukaryotes. Proteins in this family are typically
between 216 to 240 amino acids in length. This protein
has two conserved sequence motifs: VLR and TRIY. BCLP is
associated with cell morphology and a regulation of
growth pattern of tumor. It is found in adenocarcinomas
of uterine cervical tissues.
Length = 188
Score = 30.0 bits (68), Expect = 1.2
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 176 LRHIGTFNDVIHLLKTCSKIIVLTGAGVSVSCGI 209
LRH+ D + L S II +T +S+ GI
Sbjct: 26 LRHVAVPQDAVTLQYCVSNIISVTSGLLSIITGI 59
>gnl|CDD|239400 cd03126, alpha_CA_XII_XIV, Carbonic anhydrase alpha, isozymes XII
and XIV. Carbonic anhydrases (CAs) are zinc-containing
enzymes that catalyze the reversible hydration of carbon
dioxide in a two-step mechanism: a nucleophilic attack
of a zinc-bound hydroxide ion on carbon dioxide,
followed by the regeneration of the active site by
ionization of the zinc-bound water molecule and removal
of a proton from the active site. They are ubiquitous
enzymes involved in fundamental processes like
photosynthesis, respiration, pH homeostasis and ion
transport. There are three evolutionary distinct groups
- alpha, beta and gamma carbonic anhydrases - which show
no significant sequence identity or structural
similarity. Most alpha CAs are monomeric enzymes. The
zinc ion is complexed by three histidine residues. This
sub-family comprises the membrane proteins CA XII and
XIV.
Length = 249
Score = 29.4 bits (66), Expect = 2.2
Identities = 27/92 (29%), Positives = 34/92 (36%), Gaps = 22/92 (23%)
Query: 1 MFRQLFHFRYHSVHFKPPVINVEDLLQQLLDG--GGCGELTTPIILTMPEDLADLPCSPV 58
+F L +Y P NV++LL + LD G LTTP PC P
Sbjct: 148 IFSHLHEVKYKDQKVSVPGFNVQELLPKRLDEYYRYEGSLTTP------------PCYPS 195
Query: 59 --------PTPPTEEQLEDLVEPLDLPEHDTS 82
P ++EQL L L E D S
Sbjct: 196 VLWTVFRNPVQISQEQLLALETALYSTEEDES 227
>gnl|CDD|217373 pfam03115, Astro_capsid, Astrovirus capsid protein precursor. This
product is encoded by astrovirus ORF2, one of the three
astrovirus ORFs (1a, 1b, 2). The 87kD precursor protein
undergoes an intracellular cleavage to form a 79kD
protein. Subsequently, extracellular trypsin cleavage
yields the three proteins forming the infectious virion.
Length = 787
Score = 29.8 bits (67), Expect = 2.6
Identities = 10/44 (22%), Positives = 18/44 (40%)
Query: 79 HDTSTSRDNDDEDDVSSTVSNLSDISGFSDISGLDWKSGNFSGS 122
+ T S + + + GF+ IS +DW + +F S
Sbjct: 454 NKTFVSPQAHFTVKIGKDTQHYLTMQGFTLISSVDWYTPDFQPS 497
>gnl|CDD|213988 cd07433, PHP_PolIIIA_DnaE1, Polymerase and Histidinol Phosphatase
domain of alpha-subunit of bacterial polymerase III
DnaE1. PolIIIAs that contain an N-terminal PHP domain
have been classified into four basic groups based on
genome composition, phylogenetic, and domain structural
analysis: polC, dnaE1, dnaE2, and dnaE3. The PHP (also
called histidinol phosphatase-2/HIS2) domain is
associated with several types of DNA polymerases, such
as PolIIIA and family X DNA polymerases, stand alone
histidinol phosphate phosphatases (HisPPases), and a
number of uncharacterized protein families. DNA
polymerase III holoenzyme is one of the five eubacterial
DNA polymerases that are responsible for the replication
of the DNA duplex. PolIIIA core enzyme catalyzes the
reaction for polymerizing both DNA strands. dnaE1 is the
longest compared to dnaE2 and dnaE3. A unique motif was
also identified in dnaE1 and dnaE3 genes.
Length = 277
Score = 29.0 bits (66), Expect = 3.4
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 116 SGNFSGSLLWIRKQMANGINPRDVLSHILGADARIPDHIDDQTAWRLVL 164
N G++ + + GI P I+GAD + + D +RL L
Sbjct: 40 LSNLFGAVKFYKAASKAGIKP------IIGADLNVANPDDADEPFRLTL 82
>gnl|CDD|178206 PLN02596, PLN02596, hexokinase-like.
Length = 490
Score = 29.1 bits (65), Expect = 3.8
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 16/118 (13%)
Query: 48 EDLADLPCSPVPTPP-----TEEQLEDLVEPLDL----PEHDTSTSRDNDDEDDVSSTVS 98
E ++DL + P T ++L D + L+L EH + + + TVS
Sbjct: 120 EPISDLYREEISIPSNVLNGTSQELFDYIA-LELAKFVAEHPGDEADTPERVKKLGFTVS 178
Query: 99 NLSDISGFSDISGLDWKSGNFSGSLLWIRKQMANGINPRDVLSHILGADARIPDHIDD 156
D + S S + WKS + ++ K + N IN R + H G R+ +DD
Sbjct: 179 YPVDQAAASSGSAIKWKSFSADDTVG---KALVNDIN-RALEKH--GLKIRVFALVDD 230
>gnl|CDD|100097 cd05805, MPG1_transferase, GTP-mannose-1-phosphate
guanyltransferase (MPG1 transferase), also known as
GDP-mannose pyrophosphorylase, is a bifunctional enzyme
with both phosphomannose isomerase (PMI) activity and
GDP-mannose phosphorylase (GMP) activity. The protein
contains an N-terminal NTP transferase domain, an
L-beta-H domain, and a C-terminal PGM-like domain that
belongs to the alpha-D-phosphohexomutase superfamily.
This subfamily is limited to bacteria and archaea. The
alpha-D-phosphohexomutases include several related
enzymes that catalyze a reversible intramolecular
phosphoryl transfer on their sugar substrates. Members
of this group appear to lack conserved residues
necessary for metal binding and catalytic activity.
Other members of this superfamily include the
phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine
mutase (PNGM), phosphoacetylglucosamine mutase (PAGM),
the bacterial phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model.
Length = 441
Score = 28.4 bits (64), Expect = 5.4
Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 16/103 (15%)
Query: 209 IPDFRSRDGIYSRLAVDFPNLPDPQAM----FDIN----------YFKQDPR--PFFKFA 252
I + GI+ R + D P+ + + +I+ +F++D R +
Sbjct: 80 IRFLGASGGIHVRTSPDDPDKVEIEFFDSRGLNISRAMERKIENAFFREDFRRAHVDEIG 139
Query: 253 REIYPGQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGI 295
P F ++ L+ G ID VAGI
Sbjct: 140 DITEPPDFVEYYIRGLLRALDTSGLKKSGLKVVIDYAYGVAGI 182
>gnl|CDD|222432 pfam13882, Bravo_FIGEY, C-terminal domain of Fibronectin type III.
This is the very C-terminal region of neural adhesion
molecule L1 proteins that are also known as Bravo or
NrCAM. It lies upstream of the IG and Fn3 domains and
has the highly conserved motif FIGEY. The function is
not known.
Length = 118
Score = 27.3 bits (61), Expect = 6.0
Identities = 11/53 (20%), Positives = 18/53 (33%)
Query: 52 DLPCSPVPTPPTEEQLEDLVEPLDLPEHDTSTSRDNDDEDDVSSTVSNLSDIS 104
D P P P +E + P D + + D E S+ +L +
Sbjct: 43 DAPGDPEDQPMKDEGFGEYSRPEDNKPLPRGSQQSLDGEIGDDSSTDSLDEYG 95
>gnl|CDD|241472 cd13318, PH_IQSEC, IQ motif and SEC7 domain-containing protein
family Pleckstrin homology domain. The IQSEC (also
called BRAG/Brefeldin A-resistant Arf-gunanine
nucleotide exchange factor) family are a subset of Arf
GEFs that have been shown to activate Arf6, which acts
in the endocytic pathway to control the trafficking of a
subset of cargo proteins including integrins and have
key roles in the function and organization of distinct
excitatory and inhibitory synapses in the retina. The
family consists of 3 members: IQSEC1 (also called
BRAG2/GEP100), IQSEC2 (also called BRAG1), and IQSEC3
(also called SynArfGEF, BRAG3, or KIAA1110). IQSEC1
interacts with clathrin and modulates cell adhesion by
regulating integrin surface expression and in addition
to Arf6, it also activates the class II Arfs, Arf4 and
Arf5. Mutations in IQSEC2 cause non-syndromic X-linked
intellectual disability as well as reduced activation of
Arf substrates (Arf1, Arf6). IQSEC3 regulates Arf6 at
inhibitory synapses and associates with the
dystrophin-associated glycoprotein complex and S-SCAM.
These members contains a IQ domain that may bind
calmodulin, a PH domain that is thought to mediate
membrane localization by binding of phosphoinositides,
and a SEC7 domain that can promote GEF activity on ARF.
PH domains have diverse functions, but in general are
involved in targeting proteins to the appropriate
cellular location or in the interaction with a binding
partner. They share little sequence conservation, but
all have a common fold, which is electrostatically
polarized. Less than 10% of PH domains bind
phosphoinositide phosphates (PIPs) with high affinity
and specificity. PH domains are distinguished from other
PIP-binding domains by their specific high-affinity
binding to PIPs with two vicinal phosphate groups:
PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which
results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains.
PH domains are found in cellular signaling proteins such
as serine/threonine kinase, tyrosine kinases, regulators
of G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid
associated enzymes.
Length = 128
Score = 27.3 bits (61), Expect = 6.5
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 8/42 (19%)
Query: 161 RLV----LNMICEPRRRQRL----RHIGTFNDVIHLLKTCSK 194
RLV L + +P ++Q+ R + FND++ + K SK
Sbjct: 4 RLVCYCRLYEVPDPNKKQKPGLHQREVFLFNDLLVVTKIFSK 45
>gnl|CDD|197242 cd09144, PLDc_vPLD3_1, Putative catalytic domain, repeat 1, of
vertebrate phospholipase PLD3. Putative catalytic
domain, repeat 1, of phospholipase D3 (PLD3, EC
3.1.4.4). The human protein is also known as Hu-K4 or
HUK4 and it was identified as a human homolog of the
vaccinia virus protein K4, which is encoded by the
HindIII K4L gene. PLD3 is found in many human organs
with highest expression levels found in the central
nervous system. Due to the presence of two copies of the
conserved HKD motif (H-x-K-x(4)-D, where x represents
any amino acid residue), PLD3 has been assigned to the
PLD superfamily although no catalytic activity has been
detected experimentally. PLD3 is a membrane-bound
protein that colocalizes with protein disulfide
isomerase, an endoplasmic reticulum (ER) protein. Like
other homologs of protein K4, PLD3 might alter the lipid
content of associated membranes by selectively
hydrolyzing phosphatidylcholine (PC) into the
corresponding phosphatidic acid, which is thought to be
involved in the regulation of lipid movement.
Length = 172
Score = 27.2 bits (60), Expect = 7.6
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 214 SRDGIYSRLAVDFPNLPDPQAMFDINYFKQ 243
S+ G+Y R+AVD P P P DIN
Sbjct: 72 SQSGVYVRIAVDKPADPKPME--DINALSS 99
>gnl|CDD|233732 TIGR02110, PQQ_syn_pqqF, coenzyme PQQ biosynthesis probable
peptidase PqqF. In a subset of species that make
coenzyme PQQ (pyrrolo-quinoline-quinone), this probable
peptidase is found in the PQQ biosynthesis region and is
thought to act as a protease on PqqA (TIGR02107), a
probable peptide precursor of the coenzyme. PQQ is
required for some glucose dehydrogenases and alcohol
dehydrogenases [Biosynthesis of cofactors, prosthetic
groups, and carriers, Other].
Length = 696
Score = 27.9 bits (62), Expect = 8.3
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 156 DQTAWRLVLNMICEPRRRQRLR 177
+ AWRL L + EP QRLR
Sbjct: 631 SEAAWRL-LAQLLEPPFFQRLR 651
>gnl|CDD|222493 pfam14010, PEPcase_2, Phosphoenolpyruvate carboxylase. This family
of phosphoenolpyruvate carboxylases is based on
seqeunces not picked up by the model for PEPcase,
PF00311. Most of the family members are from Archaea.
Length = 476
Score = 27.6 bits (62), Expect = 9.7
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 170 PRRRQRLRHIGTF 182
PRRR R HIG F
Sbjct: 335 PRRRDRKLHIGLF 347
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.141 0.444
Gapped
Lambda K H
0.267 0.0759 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,188,361
Number of extensions: 1702737
Number of successful extensions: 1824
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1795
Number of HSP's successfully gapped: 48
Length of query: 315
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 218
Effective length of database: 6,635,264
Effective search space: 1446487552
Effective search space used: 1446487552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.4 bits)