RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6862
(315 letters)
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin,
acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ;
1.85A {Saccharomyces cerevisiae}
Length = 354
Score = 211 bits (539), Expect = 1e-66
Identities = 67/144 (46%), Positives = 85/144 (59%), Gaps = 4/144 (2%)
Query: 161 RLVLNMICEPRRRQRLRHIGTFNDVIHLLKTCSKIIVLTGAGVSVSCGIPDFRSRDGIYS 220
L + R RL + T + I L T KI+VLTGAGVS S GIPDFRS +G YS
Sbjct: 15 DLQRAINKVLCTRLRLSNFFTIDHFIQKLHTARKILVLTGAGVSTSLGIPDFRSSEGFYS 74
Query: 221 RLAVDFPNLPDPQAMFDINYFKQDPRPFFKFAREIYPGQFKPSPCHRFIKMLERHGKLLR 280
++ L DPQ +F+ N F DP F+ A + P + SP H FIKML+ GKLLR
Sbjct: 75 KI--KHLGLDDPQDVFNYNIFMHDPSVFYNIANMVLPPEKIYSPLHSFIKMLQMKGKLLR 132
Query: 281 NYSQNIDTLEQVAGI--ENVIECH 302
NY+QNID LE AGI + +++CH
Sbjct: 133 NYTQNIDNLESYAGISTDKLVQCH 156
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent
deacetylase, sirtuin, substrate peptide comple
hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens}
PDB: 3gls_A 3glt_A* 3glu_A
Length = 285
Score = 197 bits (504), Expect = 4e-62
Identities = 56/127 (44%), Positives = 85/127 (66%), Gaps = 7/127 (5%)
Query: 181 TFNDVIHLLKT--CSKIIVLTGAGVSVSCGIPDFRSR-DGIYSRLAVDFPNLPDPQAMFD 237
+ DV L++ C +++V+ GAG+S GIPDFRS G+YS L +LP P+A+F+
Sbjct: 10 SLQDVAELIRARACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNL--QQYDLPYPEAIFE 67
Query: 238 INYFKQDPRPFFKFAREIYPGQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGI-- 295
+ +F +P+PFF A+E+YPG +KP+ H F+++L G LLR Y+QNID LE+V+GI
Sbjct: 68 LPFFFHNPKPFFTLAKELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPA 127
Query: 296 ENVIECH 302
++E H
Sbjct: 128 SKLVEAH 134
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP
ribose,, gene regulation; HET: ALY OAD; 1.50A
{Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A*
1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Length = 289
Score = 197 bits (502), Expect = 7e-62
Identities = 56/127 (44%), Positives = 83/127 (65%), Gaps = 7/127 (5%)
Query: 181 TFNDVIHLLKT--CSKIIVLTGAGVSVSCGIPDFRSR-DGIYSRLAVDFPNLPDPQAMFD 237
+ + +K+ +K+I + GAG+S SCGIPDFRS G+Y LA LP P+A+FD
Sbjct: 7 SVRKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLAR--LKLPYPEAVFD 64
Query: 238 INYFKQDPRPFFKFAREIYPGQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGI-- 295
+++F+ DP PF+ A+E+YPG F+PS H +K+ + L R Y+QNIDTLE+ AG+
Sbjct: 65 VDFFQSDPLPFYTLAKELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKD 124
Query: 296 ENVIECH 302
+ +IE H
Sbjct: 125 DLIIEAH 131
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation,
transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Length = 323
Score = 189 bits (483), Expect = 2e-58
Identities = 67/153 (43%), Positives = 99/153 (64%), Gaps = 7/153 (4%)
Query: 155 DDQTAWRLVLNMICEPRRRQRLRHIGTFNDVIHLLKT--CSKIIVLTGAGVSVSCGIPDF 212
D L + +++RL T V +++ C ++I L GAG+S S GIPDF
Sbjct: 4 DMDFLRNLFSQTLSLGSQKERLLDELTLEGVARYMQSERCRRVICLVGAGISTSAGIPDF 63
Query: 213 RS-RDGIYSRLAVDFPNLPDPQAMFDINYFKQDPRPFFKFAREIYPGQFKPSPCHRFIKM 271
RS G+Y L + +LP P+A+F+I+YFK+ P PFF A+E+YPGQFKP+ CH F+++
Sbjct: 64 RSPSTGLYDNL--EKYHLPYPEAIFEISYFKKHPEPFFALAKELYPGQFKPTICHYFMRL 121
Query: 272 LERHGKLLRNYSQNIDTLEQVAGI--ENVIECH 302
L+ G LLR Y+QNIDTLE++AG+ E+++E H
Sbjct: 122 LKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAH 154
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces
cerevisiae} SCOP: c.31.1.5
Length = 361
Score = 182 bits (464), Expect = 2e-55
Identities = 56/127 (44%), Positives = 83/127 (65%), Gaps = 7/127 (5%)
Query: 181 TFNDVIHLLKT--CSKIIVLTGAGVSVSCGIPDFRSR-DGIYSRLAVDFPNLPDPQAMFD 237
+ + +K+ +K+I + GAG+S SCGIPDFRS G+Y LA LP P+A+FD
Sbjct: 15 SVRKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLAR--LKLPYPEAVFD 72
Query: 238 INYFKQDPRPFFKFAREIYPGQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGI-- 295
+++F+ DP PF+ A+E+YPG F+PS H +K+ + L R Y+QNIDTLE+ AG+
Sbjct: 73 VDFFQSDPLPFYTLAKELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKD 132
Query: 296 ENVIECH 302
+ +IE H
Sbjct: 133 DLIIEAH 139
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1,
nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga
maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A*
2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A*
2h4h_A* 3jr3_A* 2h59_A*
Length = 246
Score = 172 bits (439), Expect = 7e-53
Identities = 46/121 (38%), Positives = 63/121 (52%), Gaps = 11/121 (9%)
Query: 184 DVIHLLKTCSKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFKQ 243
+ + LL + LTGAG+S GIPDFR +GIY + Q +FDI++F
Sbjct: 5 EFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKY---------SQNVFDIDFFYS 55
Query: 244 DPRPFFKFAREIYP--GQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIEC 301
P F++FA+E Q KP+ H + LE G + +QNID L Q AG + VIE
Sbjct: 56 HPEEFYRFAKEGIFPMLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIEL 115
Query: 302 H 302
H
Sbjct: 116 H 116
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue;
Zn-binding domain, rossmann fold domain; HET: MYK NAD;
2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Length = 290
Score = 139 bits (352), Expect = 2e-39
Identities = 36/159 (22%), Positives = 67/159 (42%), Gaps = 16/159 (10%)
Query: 146 ADARIPDHIDDQTAWRLVLNMICEPRRRQRLRHIGTFNDVIHLLKTCSKIIVLTGAGVSV 205
A + + L+++ + + + T ++ ++K C ++ LTG+G S
Sbjct: 5 ASMTGGQQMGRGSMGNLMISFLKKDTQSI------TLEELAKIIKKCKHVVALTGSGTSA 58
Query: 206 SCGIPDFRS-RDGIYSRLAVDFPNLPDPQAMFDINYFKQDPRPFFKFAREIYPG-QFKPS 263
IP FR + I+S+ DP+ I F + P ++ R+I + + +
Sbjct: 59 ESNIPSFRGSSNSIWSKY--------DPRIYGTIWGFWKYPEKIWEVIRDISSDYEIEIN 110
Query: 264 PCHRFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECH 302
H + LE G L +QN+D L + +G VI H
Sbjct: 111 NGHVALSTLESLGYLKSVVTQNVDGLHEASGNTKVISLH 149
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding
domain, structural genomics, struc genomics consortium,
SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Length = 318
Score = 138 bits (349), Expect = 9e-39
Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 25/121 (20%)
Query: 184 DVIHLLKTCSKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFKQ 243
++ L+ S ++ TGAG+S + GIPDFR G+++ + P F+
Sbjct: 36 ELARLVWQSSSVVFHTGAGISTASGIPDFRGPHGVWTME--ERGLAPKFDTTFE------ 87
Query: 244 DPRPFFKFAREIYPGQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGI--ENVIEC 301
+P+ H + LER G L SQN+D L +G + + E
Sbjct: 88 ---------------SARPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAEL 132
Query: 302 H 302
H
Sbjct: 133 H 133
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family;
enzyme-substrate complex, protein binding,
transcription; HET: ALY MES; 2.00A {Archaeoglobus
fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Length = 253
Score = 136 bits (344), Expect = 1e-38
Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 9/123 (7%)
Query: 181 TFNDVIHLLKTCSKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINY 240
+L +V TGAG+S GIP FR DG++ + DP+ + I+
Sbjct: 4 EIRKAAEILAKSKHAVVFTGAGISAESGIPTFRGEDGLWRKY--------DPEEVASISG 55
Query: 241 FKQDPRPFFKFAREIYPGQF-KPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGIENVI 299
FK++PR F++F+ E+ F +P+P H I LER G + +QNID L Q AG V+
Sbjct: 56 FKRNPRAFWEFSMEMKDKLFAEPNPAHYAIAELERMGIVKAVITQNIDMLHQRAGSRRVL 115
Query: 300 ECH 302
E H
Sbjct: 116 ELH 118
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural
genomics, structural genomics consortium, SGC,
hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Length = 355
Score = 137 bits (347), Expect = 3e-38
Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 25/121 (20%)
Query: 184 DVIHLLKTCSKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFKQ 243
++ L+ S ++ TGAG+S + GIPDFR G+++ + P F+
Sbjct: 36 ELARLVWQSSSVVFHTGAGISTASGIPDFRGPHGVWTME--ERGLAPKFDTTFE------ 87
Query: 244 DPRPFFKFAREIYPGQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGI--ENVIEC 301
+P+ H + LER G L SQN+D L +G + + E
Sbjct: 88 ---------------SARPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAEL 132
Query: 302 H 302
H
Sbjct: 133 H 133
>1m2k_A Silent information regulator 2; protein-ligand complex, gene
regulation; HET: APR; 1.47A {Archaeoglobus fulgidus}
SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A*
1ici_A*
Length = 249
Score = 110 bits (277), Expect = 7e-29
Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 10/121 (8%)
Query: 184 DVIHLLKTCSKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFKQ 243
++ + ++ LTGAGVS GIP FR +DG+++R P+ + + F +
Sbjct: 4 KLLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNRY--------RPEELANPQAFAK 55
Query: 244 DPRPFFKFAREIYP--GQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIEC 301
DP +K+ +P+ H+ LER G L +QN+D L + AG NVI
Sbjct: 56 DPEKVWKWYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHL 115
Query: 302 H 302
H
Sbjct: 116 H 116
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue,
hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP:
c.31.1.5
Length = 235
Score = 103 bits (260), Expect = 1e-26
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 13/114 (11%)
Query: 194 KIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFKQDPRPFFKF-- 251
+++VLTGAG+S GI FR+ DG++ + + F +DP F
Sbjct: 3 RVLVLTGAGISAESGIRTFRAADGLWEEH--------RVEDVATPEGFDRDPELVQAFYN 54
Query: 252 --AREIYPGQFKPSPCHRFIKMLERH-GKLLRNYSQNIDTLEQVAGIENVIECH 302
R++ + +P+ H + L+ G +QNID L + AG NVI H
Sbjct: 55 ARRRQLQQPEIQPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAGNTNVIHMH 108
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase,
posttranslational modification, binding domain, rossmann
fold domain; HET: SLL NAD; 1.55A {Homo sapiens} PDB:
3rig_A* 2b4y_A* 2nyr_A*
Length = 273
Score = 93.8 bits (234), Expect = 1e-22
Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 14/125 (11%)
Query: 184 DVIHLLKTCSKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFKQ 243
D I++++GAGVS G+P FR G + + Q + F
Sbjct: 13 DFRKFFAKAKHIVIISGAGVSAESGVPTFRGAGGYWRK--------WQAQDLATPLAFAH 64
Query: 244 DPRPFFKFAREIYP--GQFKPSPCHRFIKMLE----RHGKLLRNYSQNIDTLEQVAGIEN 297
+P ++F G +P+ HR I E + G+ + +QNID L + AG +N
Sbjct: 65 NPSRVWEFYHYRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKN 124
Query: 298 VIECH 302
++E H
Sbjct: 125 LLEIH 129
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.6 bits (120), Expect = 4e-07
Identities = 56/374 (14%), Positives = 111/374 (29%), Gaps = 130/374 (34%)
Query: 8 FRYHSVHFKPPVINVEDLLQQL-------LDG-GGCG----------------------- 36
F ++V P + + L +L +DG G G
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 37 -----ELTTP-IILTMPEDL-----------ADLPCS-PVPTPPTEEQLEDLVEP----- 73
+P +L M + L +D + + + +L L++
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 74 --LDL-----PEH----DTS-----TSRDNDDEDDVSSTVSNLSDISGFSDISGL-DWKS 116
L L + + S T+R D +S+ + + IS L +
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT--THISLDHHSMTLTPDEV 303
Query: 117 GNFSGSLLWIRKQM----ANGINPRDVLSHILGADARIPDHIDDQTAWRLVLNMICEPRR 172
+ L R Q NPR LS I+ I D +
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPR-RLS-IIA--ESIRDGLA----------------T 343
Query: 173 RQRLRHIGTFNDVIHLLKTCSKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFP-NLPD 231
+H+ + + ++++ + VL A ++R + RL+V FP +
Sbjct: 344 WDNWKHV-NCDKLTTIIESS--LNVLEPA---------EYRKM---FDRLSV-FPPSAHI 387
Query: 232 PQAMFDINYFKQDPRPFFKFAREIYPGQFKPSPCHRFIKMLERHGK--LLRNYSQNIDTL 289
P + + +F + H++ ++E+ K + S ++
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNK----------LHKY-SLVEKQPKESTISIPSIYLELK 436
Query: 290 EQVAGIENVIECHD 303
+ +EN H
Sbjct: 437 VK---LENEYALHR 447
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 0.004
Identities = 67/418 (16%), Positives = 119/418 (28%), Gaps = 169/418 (40%)
Query: 10 YHSVHF-KPPVINVED--LLQQLLDG--------GGCG-------EL----------TTP 41
+ K P + L + + +G GG G EL
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGD 186
Query: 42 IILTMPEDLADLPCSPVPTPPTEEQLEDLVEPLDLPEHDTSTSRDNDDEDDVSSTVSNLS 101
+I E L++L + + Q +++E L+ P +T D + +S +S
Sbjct: 187 LIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS---NTP---DKDYLLSIPIS--- 237
Query: 102 DISGFSDISGLDWKSGNFSGSLLWIRKQMAN--------GINPRDVLSHILGADARIPDH 153
G ++ Q+A+ G P ++ S++ GA
Sbjct: 238 ---------------CPLIG-VI----QLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL 277
Query: 154 IDDQTA--------W----RLVLNMICEPRRRQRLRHIG-----TFNDVIHLLKTCSKII 196
+ TA W V I L IG + L + +
Sbjct: 278 V---TAVAIAETDSWESFFVSVRKAI------TVLFFIGVRCYEAYP-NTSLPPSILEDS 327
Query: 197 VLTGAGV-----SVSCGIPD---------FRSRDGIYSRLAVDFPNLPD-------PQAM 235
+ GV S+S + S ++ + N PQ++
Sbjct: 328 LENNEGVPSPMLSIS-NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSL 386
Query: 236 --FDINYFK--------QDPRPFFKFAREIYPG-QFKP--SPCH---------RFIKMLE 273
++ K Q PF + R++ +F P SP H K L
Sbjct: 387 YGLNLTLRKAKAPSGLDQSRIPFSE--RKLKFSNRFLPVASPFHSHLLVPASDLINKDLV 444
Query: 274 RH------------------GKLLRNYSQNIDTLEQVAGIENVIECHDWVGVCRRPLN 313
++ G LR S +I E +++C + R P+
Sbjct: 445 KNNVSFNAKDIQIPVYDTFDGSDLRVLSGSI--------SERIVDC-----IIRLPVK 489
Score = 36.2 bits (83), Expect = 0.016
Identities = 22/134 (16%), Positives = 41/134 (30%), Gaps = 47/134 (35%)
Query: 53 LPCSPVP------TPPTEEQLEDLVEP--------LDLPEHDTSTSRDNDDEDDVSSTVS 98
LP + P P ++ +DLV+ + +P +DT D S
Sbjct: 421 LPVA-SPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSG--SISE 477
Query: 99 NLSD-ISGFSDISGLDWKSGNFSGSLLWIRKQMANGINPRDVLSHIL----GADARIPD- 152
+ D I + W++ + +HIL G + +
Sbjct: 478 RIVDCI--IRLP--VKWETTTQFKA------------------THILDFGPGGASGLGVL 515
Query: 153 --HIDDQTAWRLVL 164
D T R+++
Sbjct: 516 THRNKDGTGVRVIV 529
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family,
helix-turn-helix (HTH) domain, structural genom NPPSFA;
2.00A {Pyrococcus horikoshii}
Length = 151
Score = 32.9 bits (76), Expect = 0.057
Identities = 9/64 (14%), Positives = 19/64 (29%), Gaps = 24/64 (37%)
Query: 262 PSPCHRFIKMLERHGKLLRNYSQNIDT-----------------------LEQVAGIENV 298
R I L++ G ++R ++ D + +++ IE V
Sbjct: 37 RQRIARRIDKLKKLG-IIRKFTIIPDIDKLGYMYAIVLIKSKVPSDADKVISEISDIEYV 95
Query: 299 IECH 302
Sbjct: 96 KSVE 99
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family,
transcription, DNA- binding, transcription regulation;
2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Length = 152
Score = 32.5 bits (75), Expect = 0.073
Identities = 8/64 (12%), Positives = 21/64 (32%), Gaps = 23/64 (35%)
Query: 262 PSPCHRFIKMLERHG------------KL-----------LRNYSQNIDTLEQVAGIENV 298
P H ++ +++ G +L L++ L ++ ++ V
Sbjct: 36 PETIHVRVEKMKQAGIITGARIDVSPKQLGYDVGCFIGIILKSAKDYPSALAKLESLDEV 95
Query: 299 IECH 302
E +
Sbjct: 96 TEAY 99
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu
genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A
2p6t_A
Length = 162
Score = 32.5 bits (75), Expect = 0.074
Identities = 13/65 (20%), Positives = 18/65 (27%), Gaps = 24/65 (36%)
Query: 262 PSPCHRFIKMLERHG------------KL-----------LRNYSQNIDTLEQ-VAGIEN 297
PSPC R +K LE G + +R + V
Sbjct: 38 PSPCLRRLKQLEDAGIVRQYAALLSPESVNLGLQAFIRVSIRKAKDAREDFAASVRKWPE 97
Query: 298 VIECH 302
V+ C
Sbjct: 98 VLSCF 102
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family;
2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Length = 141
Score = 32.5 bits (75), Expect = 0.075
Identities = 9/64 (14%), Positives = 20/64 (31%), Gaps = 24/64 (37%)
Query: 262 PSPCHRFIKMLERHGKLLRNYSQNID-----------------------TLEQVAGIENV 298
+ + +K LE G ++ Y+ I+ E++ + V
Sbjct: 32 ETAVRKRVKALEEKG-IIEGYTIKINPKKLGYSLVTITGVDTKPEKLFEVAEKLKEYDFV 90
Query: 299 IECH 302
E +
Sbjct: 91 KELY 94
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom
protein structure initiative, midwest center for
structural genomics; 2.30A {Agrobacterium tumefaciens
str}
Length = 162
Score = 32.6 bits (75), Expect = 0.077
Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 27/67 (40%)
Query: 262 PSPCHRFIKMLERHGKLLRNY----------------------SQNIDTLEQ----VAGI 295
+PC R I+ +E G ++R S +I+ L++ V+
Sbjct: 31 TTPCWRRIQKMEEDG-VIRRRVALLDPVKVNTKVTVFVSIRTASHSIEWLKRFSEVVSEF 89
Query: 296 ENVIECH 302
V+E +
Sbjct: 90 PEVVEFY 96
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC
family Gln binding, structural genomics, NPPSFA; HET:
GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A*
2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Length = 150
Score = 31.8 bits (73), Expect = 0.12
Identities = 10/65 (15%), Positives = 15/65 (23%), Gaps = 24/65 (36%)
Query: 262 PSPCHRFIKMLERHG------------KL-----------LRNYSQNIDTLEQ-VAGIEN 297
+ IK LE+ G L + L +A I
Sbjct: 31 KATLSYRIKKLEKDGVIKGYYAYINPASLNLDYIVITSVKAKYGKNYHVELGNKLAQIPG 90
Query: 298 VIECH 302
V +
Sbjct: 91 VWGVY 95
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional
regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis}
SCOP: a.4.5.32 d.58.4.2
Length = 144
Score = 31.8 bits (73), Expect = 0.14
Identities = 9/64 (14%), Positives = 22/64 (34%), Gaps = 24/64 (37%)
Query: 262 PSPCHRFIKMLERHGKLLRNYSQNID--------------TLEQ---------VAGIENV 298
P ++ LE G +++ Y+ +D T++ + + N+
Sbjct: 33 PPSVTERVRQLESFG-IIKQYTLEVDQKKLGLPVSCIVEATVKNADYERFKSYIQTLPNI 91
Query: 299 IECH 302
C+
Sbjct: 92 EFCY 95
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural
genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE
GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32
d.58.4.2
Length = 151
Score = 31.7 bits (73), Expect = 0.14
Identities = 9/64 (14%), Positives = 19/64 (29%), Gaps = 24/64 (37%)
Query: 262 PSPCHRFIKMLERHGKLLRNYSQNID-----------------------TLEQVAGIENV 298
S H I+ L G +++ ++ ID +A +
Sbjct: 35 ESTIHERIRKLRESG-VIKKFTAIIDPEALGYSMLAFILVKVKAGKYSEVASNLAKYPEI 93
Query: 299 IECH 302
+E +
Sbjct: 94 VEVY 97
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix,
transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Length = 163
Score = 31.4 bits (72), Expect = 0.18
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 27/67 (40%)
Query: 262 PSPCHRFIKMLERHGKLLRNYSQNID--------------TLEQ------------VAGI 295
P+PC ++ LER G ++ Y+ ++ TL + V +
Sbjct: 41 PTPCLERVRRLERQG-FIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKL 99
Query: 296 ENVIECH 302
E + ECH
Sbjct: 100 EEIQECH 106
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding,
transcriptional regulatory protein, archaeal; HET: DNA;
2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
PDB: 1ri7_A* 2zny_A* 2znz_A*
Length = 171
Score = 31.4 bits (72), Expect = 0.23
Identities = 9/64 (14%), Positives = 19/64 (29%), Gaps = 24/64 (37%)
Query: 262 PSPCHRFIKMLERHGKLLRNYSQNID-----------------------TLEQVAGIENV 298
S H I+ L G +++ ++ ID +A +
Sbjct: 55 ESTIHERIRKLRESG-VIKKFTAIIDPEALGYSMLAFILVKVKAGKYSEVASNLAKYPEI 113
Query: 299 IECH 302
+E +
Sbjct: 114 VEVY 117
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle,
antibiotic; 2.40A {Streptomyces coelicolor} SCOP:
a.4.1.9 a.121.1.1 PDB: 1ui6_A
Length = 215
Score = 30.7 bits (70), Expect = 0.49
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 139 VLSHILGADARIPDHIDDQTAWRLVLNMICEPRRRQRLR 177
V+ L R P + + W +++ + RR R
Sbjct: 166 VVGGTLEPAGREPRRLAE--MWYILIRGMVPVTRRARYV 202
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI,
structural genomics, southeast collaboratory for
structural genomics; 2.37A {Pyrococcus furiosus}
Length = 171
Score = 30.4 bits (69), Expect = 0.50
Identities = 8/70 (11%), Positives = 16/70 (22%), Gaps = 29/70 (41%)
Query: 262 PSPCHRFIKMLERHG----------------------------KLLRNYSQNIDTLEQ-V 292
S H IK L+ G + + I + +
Sbjct: 45 ESTIHFRIKKLQERGVIERYTIILGEQLKPKHLALIVLEVGKPVIEDFLERYISYISSTL 104
Query: 293 AGIENVIECH 302
+ + V+
Sbjct: 105 SALPGVLFVA 114
>2w25_A Probable transcriptional regulatory protein; transcription
regulation, mutant, RV3291C, Glu104Ala, DNA-binding;
2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A*
2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A
2qz8_A
Length = 150
Score = 28.7 bits (65), Expect = 1.4
Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 25/65 (38%)
Query: 262 PSPCHRFIKMLERHGKLLRNYSQNID--------------TLEQ----------VAGIEN 297
S ++ LE G +++ YS I+ T + IE
Sbjct: 35 VSAVQSRVRRLESRG-VVQGYSARINPEAVGHLLSAFVAITPLDPSQPDDAPARLEHIEE 93
Query: 298 VIECH 302
V C+
Sbjct: 94 VESCY 98
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 353
Score = 28.3 bits (63), Expect = 3.7
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 115 KSGNFSGSLLWIRKQMANGINPRDVLSHILGADARIPDHIDDQTAWRLVLNM-ICEPRRR 173
KSG+F ++ M +G + V++ + D+ D ++ + +
Sbjct: 276 KSGDFDEIKKYVNTFMKSGWSAASVVNQLHEY-YITNDNFDTNFKNQISWLLFTTD---- 330
Query: 174 QRLRHIGTFNDVIHLLKTCSKI 195
RL + GT N+ I LL KI
Sbjct: 331 SRLNN-GT-NEHIQLLNLLVKI 350
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease,
UBL conjugation pathway deubiquitinating enzyme, DUB,
zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB:
3n3k_A
Length = 396
Score = 27.9 bits (62), Expect = 4.4
Identities = 7/38 (18%), Positives = 14/38 (36%)
Query: 248 FFKFAREIYPGQFKPSPCHRFIKMLERHGKLLRNYSQN 285
F + ++ GQ++ F + + YSQ
Sbjct: 116 FGIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQQ 153
>3uk1_A Transketolase; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, thiamine
pyrophosphate; 2.15A {Burkholderia thailandensis} PDB:
3upt_A*
Length = 711
Score = 27.9 bits (63), Expect = 5.6
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Query: 96 TVSNLSDISGFSDISGLDWKSGNFSGSLLW--IRKQ-MA---NGI 134
T SNL++ + G G+ + +R+ M+ NG+
Sbjct: 423 TGSNLTNWKASKAVRANADGPGVQWGNHINYGVREFGMSAAINGL 467
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha
subunit; ftase, farnesyltransferase, farnesyl
transferase, prenyltransferase, CAAX, RAS, lipid
modification, prenylation; HET: SUC FAR; 1.50A {Homo
sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A*
1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A*
2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A*
3ksq_A* 1o1t_A* 1o1s_A* ...
Length = 382
Score = 27.3 bits (60), Expect = 6.9
Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 3/60 (5%)
Query: 47 PEDLADLPCSPVPTPPTEEQLEDLVEPLD---LPEHDTSTSRDNDDEDDVSSTVSNLSDI 103
P A P P P PP ++ E++ D + + + +DI
Sbjct: 16 PGQPAQPPPQPHPPPPQQQHKEEMAAEAGEAVASPMDDGFVSLDSPSYVLYRDRAEWADI 75
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein
3; structural genomics, joint center for struct
genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 26.2 bits (57), Expect = 7.6
Identities = 12/71 (16%), Positives = 16/71 (22%), Gaps = 9/71 (12%)
Query: 35 CGELTTPIILTMPEDL-------ADLPCSP--VPTPPTEEQLEDLVEPLDLPEHDTSTSR 85
C + P I PE CS P E L E +
Sbjct: 5 CDDFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHL 64
Query: 86 DNDDEDDVSST 96
+ + T
Sbjct: 65 RAQGGELMEYT 75
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P
structure initiative, midwest center for structural
genomic binding; 2.20A {Pseudomonas aeruginosa}
Length = 215
Score = 26.6 bits (59), Expect = 9.0
Identities = 6/44 (13%), Positives = 11/44 (25%), Gaps = 2/44 (4%)
Query: 136 PRDVLSHILGADARIPDHIDDQTAWRLVLNMICEPRRRQRLRHI 179
R LS +A + D L + + +
Sbjct: 88 ARPRLSAFF--EASFSAELLDPQLLDAWLAFWGAVGSIEAIGRV 129
>3ih1_A Methylisocitrate lyase; alpha-beta structure, TIM-barrel, center
for structural GENO infectious diseases, csgid; 2.00A
{Bacillus anthracis str} PDB: 3kz2_A
Length = 305
Score = 26.9 bits (60), Expect = 9.9
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 194 KIIVLTGAGVSVSCGIPDF 212
+ L+GA + S G+PD
Sbjct: 51 LALYLSGAAYTASKGLPDL 69
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.141 0.444
Gapped
Lambda K H
0.267 0.0815 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,298,455
Number of extensions: 331664
Number of successful extensions: 872
Number of sequences better than 10.0: 1
Number of HSP's gapped: 838
Number of HSP's successfully gapped: 42
Length of query: 315
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 222
Effective length of database: 4,105,140
Effective search space: 911341080
Effective search space used: 911341080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.6 bits)