RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6862
(315 letters)
>d1j8fa_ c.31.1.5 (A:) Sirt2 histone deacetylase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 323
Score = 116 bits (291), Expect = 7e-31
Identities = 66/148 (44%), Positives = 96/148 (64%), Gaps = 7/148 (4%)
Query: 160 WRLVLNMICEPRRRQRLRHIGTFNDVIHLLKT--CSKIIVLTGAGVSVSCGIPDFRSR-D 216
L + +++RL T V +++ C ++I L GAG+S S GIPDFRS
Sbjct: 9 RNLFSQTLSLGSQKERLLDELTLEGVARYMQSERCRRVICLVGAGISTSAGIPDFRSPST 68
Query: 217 GIYSRLAVDFPNLPDPQAMFDINYFKQDPRPFFKFAREIYPGQFKPSPCHRFIKMLERHG 276
G+Y L +LP P+A+F+I+YFK+ P PFF A+E+YPGQFKP+ CH F+++L+ G
Sbjct: 69 GLYDNLEKY--HLPYPEAIFEISYFKKHPEPFFALAKELYPGQFKPTICHYFMRLLKDKG 126
Query: 277 KLLRNYSQNIDTLEQVAG--IENVIECH 302
LLR Y+QNIDTLE++AG E+++E H
Sbjct: 127 LLLRCYTQNIDTLERIAGLEQEDLVEAH 154
>d1q1aa_ c.31.1.5 (A:) Hst2 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 289
Score = 107 bits (267), Expect = 9e-28
Identities = 53/127 (41%), Positives = 81/127 (63%), Gaps = 5/127 (3%)
Query: 181 TFNDVIHLLKT--CSKIIVLTGAGVSVSCGIPDFRSR-DGIYSRLAVDFPNLPDPQAMFD 237
+ + +K+ +K+I + GAG+S SCGIPDFRS G+Y LA LP P+A+FD
Sbjct: 7 SVRKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARL--KLPYPEAVFD 64
Query: 238 INYFKQDPRPFFKFAREIYPGQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGIEN 297
+++F+ DP PF+ A+E+YPG F+PS H +K+ + L R Y+QNIDTLE+ AG+++
Sbjct: 65 VDFFQSDPLPFYTLAKELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKD 124
Query: 298 VIECHDW 304
+
Sbjct: 125 DLIIEAH 131
>d1yc5a1 c.31.1.5 (A:1-245) NAD-dependent deacetylase NpdA
{Thermotoga maritima [TaxId: 2336]}
Length = 245
Score = 102 bits (256), Expect = 1e-26
Identities = 46/122 (37%), Positives = 63/122 (51%), Gaps = 11/122 (9%)
Query: 183 NDVIHLLKTCSKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFK 242
+ + LL + LTGAG+S GIPDFR +GIY + Q +FDI++F
Sbjct: 4 KEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKY---------SQNVFDIDFFY 54
Query: 243 QDPRPFFKFAREIYP--GQFKPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIE 300
P F++FA+E Q KP+ H + LE G + +QNID L Q AG + VIE
Sbjct: 55 SHPEEFYRFAKEGIFPMLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIE 114
Query: 301 CH 302
H
Sbjct: 115 LH 116
>d2b4ya1 c.31.1.5 (A:36-302) NAD-dependent deacetylase sirtuin-5
{Human (Homo sapiens) [TaxId: 9606]}
Length = 267
Score = 102 bits (255), Expect = 3e-26
Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 14/126 (11%)
Query: 183 NDVIHLLKTCSKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFK 242
D I++++GAGVS G+P FR G + + Q + F
Sbjct: 6 ADFRKFFAKAKHIVIISGAGVSAESGVPTFRGAGGYWRKW--------QAQDLATPLAFA 57
Query: 243 QDPRPF--FKFAREIYPGQFKPSPCHRFIKMLERH----GKLLRNYSQNIDTLEQVAGIE 296
+P F R G +P+ HR I E G+ + +QNID L + AG +
Sbjct: 58 HNPSRVWEFYHYRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTK 117
Query: 297 NVIECH 302
N++E H
Sbjct: 118 NLLEIH 123
>d1ma3a_ c.31.1.5 (A:) AF0112, Sir2 homolog (Sir2-AF2) {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 252
Score = 99 bits (248), Expect = 2e-25
Identities = 44/124 (35%), Positives = 64/124 (51%), Gaps = 9/124 (7%)
Query: 181 TFNDVIHLLKTCSKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINY 240
+L +V TGAG+S GIP FR DG++ + DP+ + I+
Sbjct: 4 EIRKAAEILAKSKHAVVFTGAGISAESGIPTFRGEDGLWRKY--------DPEEVASISG 55
Query: 241 FKQDPRPFFKFAREIYPGQF-KPSPCHRFIKMLERHGKLLRNYSQNIDTLEQVAGIENVI 299
FK++PR F++F+ E+ F +P+P H I LER G + +QNID L Q AG V+
Sbjct: 56 FKRNPRAFWEFSMEMKDKLFAEPNPAHYAIAELERMGIVKAVITQNIDMLHQRAGSRRVL 115
Query: 300 ECHD 303
E H
Sbjct: 116 ELHG 119
>d1m2ka_ c.31.1.5 (A:) AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 249
Score = 96.4 bits (239), Expect = 3e-24
Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 10/122 (8%)
Query: 184 DVIHLLKTCSKIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFKQ 243
++ + ++ LTGAGVS GIP FR +DG+++R P+ + + F +
Sbjct: 4 KLLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNRY--------RPEELANPQAFAK 55
Query: 244 DPRPFFKFAREIYPGQFKPSPC--HRFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIEC 301
DP +K+ F P H+ LER G L +QN+D L + AG NVI
Sbjct: 56 DPEKVWKWYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHL 115
Query: 302 HD 303
H
Sbjct: 116 HG 117
>d1s5pa_ c.31.1.5 (A:) NAD-dependent deacetylase CobB {Escherichia
coli [TaxId: 562]}
Length = 235
Score = 94.1 bits (233), Expect = 2e-23
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 13/114 (11%)
Query: 194 KIIVLTGAGVSVSCGIPDFRSRDGIYSRLAVDFPNLPDPQAMFDINYFKQDPRPFFK--- 250
+++VLTGAG+S GI FR+ DG++ + + F +DP
Sbjct: 3 RVLVLTGAGISAESGIRTFRAADGLWEEH--------RVEDVATPEGFDRDPELVQAFYN 54
Query: 251 -FAREIYPGQFKPSPCHRFIKMLERH-GKLLRNYSQNIDTLEQVAGIENVIECH 302
R++ + +P+ H + L+ G +QNID L + AG NVI H
Sbjct: 55 ARRRQLQQPEIQPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAGNTNVIHMH 108
>d1ui5a2 a.121.1.1 (A:80-212) A-factor receptor homolog CprB
{Streptomyces coelicolor [TaxId: 1902]}
Length = 133
Score = 31.0 bits (70), Expect = 0.075
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 139 VLSHILGADARIPDHIDDQTAWRLVLNMICEPRRRQRLR 177
V+ L R P + + W +++ + RR R
Sbjct: 87 VVGGTLEPAGREPRRLAE--MWYILIRGMVPVTRRARYV 123
>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast
(Kluyveromyces lactis) [TaxId: 28985]}
Length = 92
Score = 26.8 bits (59), Expect = 1.4
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 250 KFAREIYPGQFKPSPCHRFIKMLERHG 276
+F +E+ P FK S F++ L +G
Sbjct: 38 RFVQEVLPKYFKHSNFASFVRQLNMYG 64
>d1chda_ c.40.1.1 (A:) Methylesterase CheB, C-terminal domain
{Salmonella typhimurium [TaxId: 90371]}
Length = 198
Score = 27.2 bits (60), Expect = 2.0
Identities = 11/66 (16%), Positives = 19/66 (28%)
Query: 153 HIDDQTAWRLVLNMICEPRRRQRLRHIGTFNDVIHLLKTCSKIIVLTGAGVSVSCGIPDF 212
+ A + P R R F+ V + ++LTG G + G+
Sbjct: 84 ELARSGANYQIKIHDGPPVNRHRPSVDVLFHSVAKHAGRNAVGVILTGMGNDGAAGMLAM 143
Query: 213 RSRDGI 218
Sbjct: 144 YQAGAW 149
>d1m47a_ a.26.1.2 (A:) Interleukin-2 (IL-2) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 128
Score = 25.9 bits (57), Expect = 3.9
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 15/83 (18%)
Query: 26 LQQLLDGGGCGE-LTTPIILT----MPE---DLADLPCSPVPTPPTEEQLEDLVEPLDLP 77
LQ +L+G + +LT MP+ +L L C EE+L+ L E L+L
Sbjct: 16 LQMILNGINNYKNPKLTRMLTFKFYMPKKATELKHLQC-------LEEELKPLEEVLNLA 68
Query: 78 EHDTSTSRDNDDEDDVSSTVSNL 100
+ R D +++ V L
Sbjct: 69 QSKNFHLRPRDLISNINVIVLEL 91
>d2o62a1 b.60.1.9 (A:133-269) Uncharacterized protein All1756
ortholog {Nostoc punctiforme [TaxId: 272131]}
Length = 137
Score = 25.6 bits (56), Expect = 4.7
Identities = 14/90 (15%), Positives = 26/90 (28%), Gaps = 3/90 (3%)
Query: 90 EDDVSSTVSNLSDISGFSDISGLDWKSGNFSGSLLW---IRKQMANGINPRDVLSHILGA 146
D+ ST + + + + + I + VL GA
Sbjct: 27 PPDIYSTTLKIQLDDAGRLMQSTSFGERTITSTATIKGSIVLFDQDPEKQVQVLLLPDGA 86
Query: 147 DARIPDHIDDQTAWRLVLNMICEPRRRQRL 176
A P + + L + + RQR+
Sbjct: 87 SATSPLKVQLRQPLFLEAGWLIQSDLRQRM 116
>d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel
(Mytilus edulis) [TaxId: 6550]}
Length = 275
Score = 26.3 bits (57), Expect = 5.5
Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 12/53 (22%)
Query: 171 RRRQRLRHIGTFNDVIHLL------------KTCSKIIVLTGAGVSVSCGIPD 211
++ +L+ + D+ ++ + K I +G VS G+ D
Sbjct: 3 KKTTQLKQMLNSKDLEFIMEAHNGLSARIVQEAGFKGIWGSGLSVSAQLGVRD 55
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus
subtilis [TaxId: 1423]}
Length = 63
Score = 24.2 bits (53), Expect = 6.2
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 238 INYFKQDPR-PFFKFAREIYPGQFKPSPCHRFIKMLERHGKLLRNYSQNID 287
I K+D R + R+I + P ++ LE G +++ Y+ +D
Sbjct: 11 IEELKKDSRLSMRELGRKI---KLSPPSVTERVRQLESFG-IIKQYTLEVD 57
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.141 0.444
Gapped
Lambda K H
0.267 0.0600 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,317,035
Number of extensions: 65202
Number of successful extensions: 235
Number of sequences better than 10.0: 1
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 18
Length of query: 315
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 230
Effective length of database: 1,240,546
Effective search space: 285325580
Effective search space used: 285325580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.5 bits)