BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6866
(961 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 844 bits (2180), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/894 (48%), Positives = 587/894 (65%), Gaps = 41/894 (4%)
Query: 95 KEKEMDVAQLRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQ 154
KE++MD +LK EV +D+H + L+EL+ T RGL+ L +DGPN+L
Sbjct: 3 KERDMD-----ELKKEVSMDDHKLSLDELHRKYGTDLSRGLTPARAAEILARDGPNALTP 57
Query: 155 KYRINNVYVLVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIV 214
+F GFS LLW GA+L FLAY ++A T EE DNL+LG++L+ I+
Sbjct: 58 PPTTPEWVKFCRQLFGGFSMLLWIGAILCFLAYGIQAATEEEPQNDNLYLGVVLSAVVII 117
Query: 215 TGMFSFYQERKSSHITESFAKMIPTRATVIRNGSVKEIDSAGLVRGDIVLLKIGDKVPAD 274
TG FS+YQE KSS I ESF M+P +A VIRNG I++ +V GD+V +K GD++PAD
Sbjct: 118 TGCFSYYQEAKSSKIMESFKNMVPQQALVIRNGEKMSINAEEVVVGDLVEVKGGDRIPAD 177
Query: 275 IRLIEIQDLKAENSSLTGEVEPVTCTLGATNSFAVESRNLVFFSTNLVSGSGKGVVILTG 334
+R+I K +NSSLTGE EP T + TN +E+RN+ FFSTN V G+ +G+V+ TG
Sbjct: 178 LRIISANGCKVDNSSLTGESEPQTRSPDFTNENPLETRNIAFFSTNCVEGTARGIVVYTG 237
Query: 335 SNTVMGKIAGLTNRLEKKTTPIEQEVQHFMRLISMWALTLGAICFLLALYIGYNWLNACV 394
TVMG+IA L + LE TPI E++HF+ +I+ A+ LG F+L+L + Y WL A +
Sbjct: 238 DRTVMGRIATLASGLEGGQTPIAAEIEHFIHIITGVAVFLGVSFFILSLILEYTWLEAVI 297
Query: 395 YVIGIIVANVPEGXXXXXXXXXXXXXKRLASKNCIVRRLQTVETLGSIRTICTDKTGTLT 454
++IGIIVANVPEG KR+A KNC+V+ L+ VETLGS TIC+DKTGTLT
Sbjct: 298 FLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLT 357
Query: 455 QNKMTVLHLSFNREIYHV-----KNGVDVDIQNFETNTTYKTLVRAACLCSKAEFEPNQD 509
QN+MTV H+ + +I+ ++GV D +T+ T+ L R A LC++A F+ NQ+
Sbjct: 358 QNRMTVAHMWSDNQIHEADTTENQSGVSFD----KTSATWLALSRIAGLCNRAVFQANQE 413
Query: 510 NIPMRERKASGDATEVGILHFIQPRIKSIQDVRNTFPKVTEVPFNSLNKFHLTVHFSPLN 569
N+P+ +R +GDA+E +L I+ S++++R + K+ E+PFNS NK+ L++H +P
Sbjct: 414 NLPILKRAVAGDASESALLKCIELCCGSVKEMRERYTKIVEIPFNSTNKYQLSIHKNPNT 473
Query: 570 ---KYFLLMKGAPEVIMERCTTMMAESDKEAFLTAEKKYELEDKIKLFASKGERVLAFAD 626
++ L+MKGAPE I++RC++++ KE L E K ++ GERVL F
Sbjct: 474 AEPRHLLVMKGAPERILDRCSSILIHG-KEQPLDEELKDAFQNAYLELGGLGERVLGFCH 532
Query: 627 LHLGQNNFPVNFKFSTDPMNFPSSGFRLIGLISLYDPPRPAVPDAIDACHKAGIRVIMVT 686
L L FP F+F TD +NFP +GLIS+ DPPR AVPDA+ C AGI+VIMVT
Sbjct: 533 LFLPDEQFPEGFQFDTDDVNFPLDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVT 592
Query: 687 GDHPCTAKAIAIKCHILSETS---------------------SDDNVFTGTDLRKITDEE 725
GDHP TAKAIA I+SE + + V G+DL+ +T E+
Sbjct: 593 GDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQ 652
Query: 726 LKDILETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGDGVNDAPALKKADIGIAMGIT 785
L DIL+ + E+VFARTSP QKL IVE Q IVAVTGDGVND+PA KKADIG+AMGI
Sbjct: 653 LDDILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPASKKADIGVAMGIA 712
Query: 786 GSEVSKQTADMILMDDNFASIVLGIEEGRLIFDNLKKSIAYILASNIPEILPFLFYIFLG 845
GS+VSKQ ADMIL+DDNFASIV G+EEGRLIFDNLKKSIAY L SNIPEI PFL +I
Sbjct: 713 GSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIAN 772
Query: 846 IPLPVSTVTVLCIDLGTDMWPAVSLAYEKPESNIMSREPRNPRTDHLVGRKLVTYAYFHL 905
IPLP+ TVT+LCIDLGTDM PA+SLAYE+ ES+IM R+PRNP+TD LV +L++ AY +
Sbjct: 773 IPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQPRNPKTDKLVNEQLISMAYGQI 832
Query: 906 GILETLAGFLTYFHVMYDAGWDPMDLLNIRKSWESN--NNLEDSYHKMWTRTER 957
G+++ L GF TYF ++ + G+ P+ LL +R +W+ N++EDSY + WT +R
Sbjct: 833 GMIQALGGFFTYFVILAENGFLPIHLLGLRVNWDDRWINDVEDSYGQQWTYEQR 886
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 837 bits (2161), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/885 (48%), Positives = 581/885 (65%), Gaps = 36/885 (4%)
Query: 104 LRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYV 163
+ +LK EV +D+H + L+EL+ T RGL+ L +DGPN+L
Sbjct: 1 MDELKKEVSMDDHKLSLDELHRKYGTDLSRGLTPARAAEILARDGPNALTPPPTTPEWVK 60
Query: 164 LVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGMFSFYQE 223
+F GFS LLW GA+L FLAY ++A T EE DNL+LG++L+ I+TG FS+YQE
Sbjct: 61 FCRQLFGGFSMLLWIGAILCFLAYGIQAATEEEPQNDNLYLGVVLSAVVIITGCFSYYQE 120
Query: 224 RKSSHITESFAKMIPTRATVIRNGSVKEIDSAGLVRGDIVLLKIGDKVPADIRLIEIQDL 283
KSS I ESF M+P +A VIRNG I++ +V GD+V +K GD++PAD+R+I
Sbjct: 121 AKSSKIMESFKNMVPQQALVIRNGEKMSINAEEVVVGDLVEVKGGDRIPADLRIISANGC 180
Query: 284 KAENSSLTGEVEPVTCTLGATNSFAVESRNLVFFSTNLVSGSGKGVVILTGSNTVMGKIA 343
K +NSSLTGE EP T + TN +E+RN+ FFSTN V G+ +G+V+ TG TVMG+IA
Sbjct: 181 KVDNSSLTGESEPQTRSPDFTNENPLETRNIAFFSTNCVEGTARGIVVYTGDRTVMGRIA 240
Query: 344 GLTNRLEKKTTPIEQEVQHFMRLISMWALTLGAICFLLALYIGYNWLNACVYVIGIIVAN 403
L + LE TPI E++HF+ +I+ A+ LG F+L+L + Y WL A +++IGIIVAN
Sbjct: 241 TLASGLEGGQTPIAAEIEHFIHIITGVAVFLGVSFFILSLILEYTWLEAVIFLIGIIVAN 300
Query: 404 VPEGXXXXXXXXXXXXXKRLASKNCIVRRLQTVETLGSIRTICTDKTGTLTQNKMTVLHL 463
VPEG KR+A KNC+V+ L+ VETLGS TIC+ KTGTLTQN+MTV H+
Sbjct: 301 VPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSXKTGTLTQNRMTVAHM 360
Query: 464 SFNREIYHV-----KNGVDVDIQNFETNTTYKTLVRAACLCSKAEFEPNQDNIPMRERKA 518
+ +I+ ++GV D +T+ T+ L R A LC++A F+ NQ+N+P+ +R
Sbjct: 361 WSDNQIHEADTTENQSGVSFD----KTSATWLALSRIAGLCNRAVFQANQENLPILKRAV 416
Query: 519 SGDATEVGILHFIQPRIKSIQDVRNTFPKVTEVPFNSLNKFHLTVHFSPLN---KYFLLM 575
+GDA+E +L I+ S++++R + K+ E+PFNS NK+ L++H +P ++ L+M
Sbjct: 417 AGDASESALLKCIELCCGSVKEMRERYTKIVEIPFNSTNKYQLSIHKNPNTAEPRHLLVM 476
Query: 576 KGAPEVIMERCTTMMAESDKEAFLTAEKKYELEDKIKLFASKGERVLAFADLHLGQNNFP 635
KGAPE I++RC++++ KE L E K ++ GERVL F L L FP
Sbjct: 477 KGAPERILDRCSSILIHG-KEQPLDEELKDAFQNAYLELGGLGERVLGFCHLFLPDEQFP 535
Query: 636 VNFKFSTDPMNFPSSGFRLIGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKA 695
F+F TD +NFP +GLIS+ DPPR AVPDA+ C AGI+VIMVTGDHP TAKA
Sbjct: 536 EGFQFDTDDVNFPLDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKA 595
Query: 696 IAIKCHILSETS---------------------SDDNVFTGTDLRKITDEELKDILETNK 734
IA I+SE + + V G+DL+ +T E+L DIL+ +
Sbjct: 596 IAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDDILKYHT 655
Query: 735 ELVFARTSPLQKLRIVELYQSLDEIVAVTGDGVNDAPALKKADIGIAMGITGSEVSKQTA 794
E+VFARTSP QKL IVE Q IVAVTGDGVND+PA KKADIG+AMGI GS+VSKQ A
Sbjct: 656 EIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSDVSKQAA 715
Query: 795 DMILMDDNFASIVLGIEEGRLIFDNLKKSIAYILASNIPEILPFLFYIFLGIPLPVSTVT 854
DMIL+DDNFASIV G+EEGRLIFDNLKKSIAY L SNIPEI PFL +I IPLP+ TVT
Sbjct: 716 DMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVT 775
Query: 855 VLCIDLGTDMWPAVSLAYEKPESNIMSREPRNPRTDHLVGRKLVTYAYFHLGILETLAGF 914
+LCIDLGTDM PA+SLAYE+ ES+IM R+PRNP+TD LV +L++ AY +G+++ L GF
Sbjct: 776 ILCIDLGTDMVPAISLAYEQAESDIMKRQPRNPKTDKLVNEQLISMAYGQIGMIQALGGF 835
Query: 915 LTYFHVMYDAGWDPMDLLNIRKSWESN--NNLEDSYHKMWTRTER 957
TYF ++ + G+ P+ LL +R +W+ N++EDSY + WT +R
Sbjct: 836 FTYFVILAENGFLPIHLLGLRVNWDDRWINDVEDSYGQQWTYEQR 880
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 816 bits (2108), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/879 (48%), Positives = 580/879 (65%), Gaps = 28/879 (3%)
Query: 106 DLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYVLV 165
+LK EV +D+H + L+EL++ T RGL+ K L +DGPNSL
Sbjct: 39 ELKKEVSMDDHKLSLDELHNKYGTDLTRGLTNARAKEILARDGPNSLTPPPTTPEWIKFC 98
Query: 166 GYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGMFSFYQERK 225
+F GFS LLW GA+L FLAY ++A T +E DNL+LG++L+ IVTG FS+YQE K
Sbjct: 99 RQLFGGFSILLWIGAILCFLAYGIQAATEDEPANDNLYLGVVLSTVVIVTGCFSYYQEAK 158
Query: 226 SSHITESFAKMIPTRATVIRNGSVKEIDSAGLVRGDIVLLKIGDKVPADIRLIEIQDLKA 285
SS I +SF M+P +A VIR+G I++ +V GD+V +K GD++PAD+R+I K
Sbjct: 159 SSRIMDSFKNMVPQQALVIRDGEKSTINAEFVVAGDLVEVKGGDRIPADLRIISAHGCKV 218
Query: 286 ENSSLTGEVEPVTCTLGATNSFAVESRNLVFFSTNLVSGSGKGVVILTGSNTVMGKIAGL 345
+NSSLTGE EP T + ++ +E+RN+ FFSTN V G+ +GVV+ TG TVMG+IA L
Sbjct: 219 DNSSLTGESEPQTRSPEFSSENPLETRNIAFFSTNCVEGTARGVVVYTGDRTVMGRIATL 278
Query: 346 TNRLEKKTTPIEQEVQHFMRLISMWALTLGAICFLLALYIGYNWLNACVYVIGIIVANVP 405
+ LE TPI E++HF+ +I+ A+ LG F+L+L +GY+WL A +++IGIIVANVP
Sbjct: 279 ASGLEVGRTPIAIEIEHFIHIITGVAVFLGVSFFILSLILGYSWLEAVIFLIGIIVANVP 338
Query: 406 EGXXXXXXXXXXXXXKRLASKNCIVRRLQTVETLGSIRTICTDKTGTLTQNKMTVLHLSF 465
EG KR+A KNC+V+ L+ VETLGS TIC+DKTGTLTQN+MTV H+ F
Sbjct: 339 EGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMWF 398
Query: 466 NREIYHVKNGVDVDIQNFE-TNTTYKTLVRAACLCSKAEFEPNQDNIPMRERKASGDATE 524
+ +I+ + F+ T+ T+ L R A LC++A F+ QDN+P+ +R +GDA+E
Sbjct: 399 DNQIHEADTTENQSGAAFDKTSATWSALSRIAALCNRAVFQAGQDNVPILKRSVAGDASE 458
Query: 525 VGILHFIQPRIKSIQDVRNTFPKVTEVPFNSLNKFHLTVH---FSPLNKYFLLMKGAPEV 581
+L I+ S+Q +R+ PK+ E+PFNS NK+ L++H S ++Y L+MKGAPE
Sbjct: 459 SALLKCIELCCGSVQGMRDRNPKIVEIPFNSTNKYQLSIHENEKSSESRYLLVMKGAPER 518
Query: 582 IMERCTTMMAESDKEAFLTAEKKYELEDKIKLFASKGERVLAFADLHLGQNNFPVNFKFS 641
I++RC+T++ +E L + K ++ GERVL F L ++ + + F
Sbjct: 519 ILDRCSTILLNGAEEP-LKEDMKEAFQNAYLELGGLGERVLGFCHFALPEDKYNEGYPFD 577
Query: 642 TDPMNFPSSGFRLIGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIKCH 701
D NFP++ +GL+++ DPPR AVPDA+ C AGI+VIMVTGDHP TAKAIA
Sbjct: 578 ADEPNFPTTDLCFVGLMAMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVG 637
Query: 702 ILSETS---------------------SDDNVFTGTDLRKITDEELKDILETNKELVFAR 740
I+SE + + V G+DL+ ++ E L DIL + E+VFAR
Sbjct: 638 IISEGNETIEDIAARLNIPIGQVNPRDAKACVVHGSDLKDLSTEVLDDILHYHTEIVFAR 697
Query: 741 TSPLQKLRIVELYQSLDEIVAVTGDGVNDAPALKKADIGIAMGITGSEVSKQTADMILMD 800
TSP QKL IVE Q IVAVTGDGVND+PALKKADIG+AMGI+GS+VSKQ ADMIL+D
Sbjct: 698 TSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGISGSDVSKQAADMILLD 757
Query: 801 DNFASIVLGIEEGRLIFDNLKKSIAYILASNIPEILPFLFYIFLGIPLPVSTVTVLCIDL 860
DNFASIV G+EEGRLIFDNLKKSIAY L SNIPEI PFL +I +PLP+ TVT+LCIDL
Sbjct: 758 DNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLVFIIGNVPLPLGTVTILCIDL 817
Query: 861 GTDMWPAVSLAYEKPESNIMSREPRNPRTDHLVGRKLVTYAYFHLGILETLAGFLTYFHV 920
GTDM PA+SLAYE+ ES+IM R+PRNP+TD LV +L++ AY +G+++ L GF +YF +
Sbjct: 818 GTDMVPAISLAYEQAESDIMKRQPRNPKTDKLVNERLISMAYGQIGMIQALGGFFSYFVI 877
Query: 921 MYDAGWDPMDLLNIRKSWESN--NNLEDSYHKMWTRTER 957
+ + G+ PMDL+ R W+ +++EDS+ + WT +R
Sbjct: 878 LAENGFLPMDLIGKRVRWDDRWISDVEDSFGQQWTYEQR 916
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 763 bits (1971), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/884 (44%), Positives = 554/884 (62%), Gaps = 28/884 (3%)
Query: 103 QLRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVY 162
+L ++K E++I++H + + EL T +GLS L +DGPN+L
Sbjct: 41 KLENMKKEMEINDHQLSVAELEQKYQTSATKGLSASLAAELLLRDGPNALRPPRGTPEYV 100
Query: 163 VLVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGMFSFYQ 222
+ G L+W A + +A+ ++A + DNL+L + L +VTG F +YQ
Sbjct: 101 KFARQLAGGLQCLMWVAAAICLIAFAIQASEGDLTTDDNLYLALALIAVVVVTGCFGYYQ 160
Query: 223 ERKSSHITESFAKMIPTRATVIRNGSVKEIDSAGLVRGDIVLLKIGDKVPADIRLIEIQD 282
E KS++I SF ++P +ATVIR+G +I++ LV GD+V +K GD+VPADIR+++ Q
Sbjct: 161 EFKSTNIIASFKNLVPQQATVIRDGDKFQINADQLVVGDLVEMKGGDRVPADIRILQAQG 220
Query: 283 LKAENSSLTGEVEPVTCTLGATNSFAVESRNLVFFSTNLVSGSGKGVVILTGSNTVMGKI 342
K +NSSLTGE EP T + T+ +E+RN+ FFST + G+ +G+V+ TG T++G+I
Sbjct: 221 RKVDNSSLTGESEPQTRSPECTHESPLETRNIAFFSTMCLEGTAQGLVVNTGDRTIIGRI 280
Query: 343 AGLTNRLEKKTTPIEQEVQHFMRLISMWALTLGAICFLLALYIGYNWLNACVYVIGIIVA 402
A L + +E + TPI E++HF+ +I+ A+ GA F++A+ IGY +L A V+ + I+VA
Sbjct: 281 ASLASGVENEKTPIAIEIEHFVDIIAGLAILFGATFFIVAMCIGYTFLRAMVFFMAIVVA 340
Query: 403 NVPEGXXXXXXXXXXXXXKRLASKNCIVRRLQTVETLGSIRTICTDKTGTLTQNKMTVLH 462
VPEG KRLASKNC+V+ L+ VETLGS IC+DKTGTLTQN+MTV H
Sbjct: 341 YVPEGLLATVTVCLSLTAKRLASKNCVVKNLEAVETLGSTSVICSDKTGTLTQNRMTVSH 400
Query: 463 LSFNREIYHVKNGVDVDIQNF-ETNTTYKTLVRAACLCSKAEFEPNQDNIPMRERKASGD 521
L F+ I+ D Q F +++ T++ L R LC++A F+ QD +P+ +R GD
Sbjct: 401 LWFDNHIHSADTTEDQSGQTFDQSSETWRALCRVLTLCNRAAFKSGQDAVPVPKRIVIGD 460
Query: 522 ATEVGILHFIQPRIKSIQDVRNTFPKVTEVPFNSLNKFHLTVHF--SPLN-KYFLLMKGA 578
A+E +L F + + + R FPKV E+PFNS NKF L++H P + ++ L+MKGA
Sbjct: 461 ASETALLKFSELTLGNAMGYRERFPKVCEIPFNSTNKFQLSIHTLEDPRDPRHVLVMKGA 520
Query: 579 PEVIMERCTTMMAESDKEAFLTAEKKYELEDKIKLFASKGERVLAFADLHLGQNNFPVNF 638
PE ++ERC++++ + +E L + + + GERVL F L+L + ++P +
Sbjct: 521 PERVLERCSSILIKG-QELPLDEQWREAFQTAYLSLGGLGERVLGFCQLYLSEKDYPPGY 579
Query: 639 KFSTDPMNFPSSGFRLIGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAI 698
F + MNFP+SG GL+S+ DPPR VPDA+ C AGIRVIMVTGDHP TAKAIA
Sbjct: 580 AFDVEAMNFPTSGLSFAGLVSMIDPPRATVPDAVLKCRTAGIRVIMVTGDHPITAKAIAA 639
Query: 699 KCHILSETS---------------------SDDNVFTGTDLRKITDEELKDILETNKELV 737
I+SE S + V G L+ + EL + L T+ E+V
Sbjct: 640 SVGIISEGSETVEDIAARLRVPVDQVNRKDARACVINGMQLKDMDPSELVEALRTHPEMV 699
Query: 738 FARTSPLQKLRIVELYQSLDEIVAVTGDGVNDAPALKKADIGIAMGITGSEVSKQTADMI 797
FARTSP QKL IVE Q L IVAVTGDGVND+PALKKADIG+AMGI GS+ +K ADMI
Sbjct: 700 FARTSPQQKLVIVESCQRLGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDAAKNAADMI 759
Query: 798 LMDDNFASIVLGIEEGRLIFDNLKKSIAYILASNIPEILPFLFYIFLGIPLPVSTVTVLC 857
L+DDNFASIV G+E+GRLIFDNLKKSIAY L NIPE+ P+L YI + +PLP+ +T+L
Sbjct: 760 LLDDNFASIVTGVEQGRLIFDNLKKSIAYTLTKNIPELTPYLIYITVSVPLPLGCITILF 819
Query: 858 IDLGTDMWPAVSLAYEKPESNIMSREPRNPRTDHLVGRKLVTYAYFHLGILETLAGFLTY 917
I+L TD++P+VSLAYEK ES+IM PRNP+ D LV L Y+YF +G +++ AGF Y
Sbjct: 820 IELCTDIFPSVSLAYEKAESDIMHLRPRNPKRDRLVNEPLAAYSYFQIGAIQSFAGFTDY 879
Query: 918 FHVMYDAGWDPMDLLNIRKSWESNN--NLEDSYHKMWTRTERTW 959
F M GW P+ + +R WE+++ +L+DSY + WT +R +
Sbjct: 880 FTAMAQEGWFPLLCVGLRPQWENHHLQDLQDSYGQEWTFGQRLY 923
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 335 bits (860), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 267/853 (31%), Positives = 416/853 (48%), Gaps = 89/853 (10%)
Query: 121 EELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYVLVGYIFRGFSA-LLWFG 179
EE + GL+ +VKR LEK G N LP + +++ LV F +L
Sbjct: 10 EECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEG-KSLWELVLEQFEDLLVRILLLA 68
Query: 180 ALLSF-LAYLLEAETNEEKPQDNLWLGIILALTCIVTGMFSFYQERKSSHITESFAKMIP 238
A +SF LA+ E E + + +IL I + +QER + + E+ + P
Sbjct: 69 ACISFVLAWFEEGEETVTAFVEPFVILLIL----IANAIVGVWQERNAENAIEALKEYEP 124
Query: 239 TRATVIR--NGSVKEIDSAGLVRGDIVLLKIGDKVPADIRLIEIQD--LKAENSSLTGE- 293
V R SV+ I + +V GDIV + +GDKVPADIR++ I+ L+ + S LTGE
Sbjct: 125 EMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILTIKSTTLRVDQSILTGES 184
Query: 294 VEPVTCTLGATNSFAV--ESRNLVFFSTNLVSGSGKGVVILTGSNTVMGKIAGLTNRLEK 351
V + T + AV + +N++F TN+ +G G+V TG T +GKI E+
Sbjct: 185 VSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKAIGIVATTGVGTEIGKIRDQMAATEQ 244
Query: 352 KTTPIEQEVQHF---------MRLISMWALTLGAICFLLALYIGYNWLNACVYVI----G 398
TP++Q++ F + +++W + +G F ++ G +W+ +Y
Sbjct: 245 DKTPLQQKLDEFGEQLSKVISLICVAVWLINIGH--FNDPVH-GGSWIRGAIYYFKIAVA 301
Query: 399 IIVANVPEGXXXXXXXXXXXXXKRLASKNCIVRRLQTVETLGSIRTICTDKTGTLTQNKM 458
+ VA +PEG +R+A KN IVR L +VETLG IC+DKTGTLT N+M
Sbjct: 302 LAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQM 361
Query: 459 TVLHL----------------SFNREIYHVKNGVDVDIQNFETNTTYKTLVRAACLCSKA 502
+V + S Y + V + + + Y LV A +C+
Sbjct: 362 SVCKMFIIDRIDGDLCLLNEFSVTGSTYAPEGEVLKNDKPVRSGQ-YDGLVELATICALC 420
Query: 503 EFEPNQDNIPMRERKA----SGDATEVGILHFIQPRIKSIQDVRNTFPKVTEVPFNSL-- 556
N ++ E K G+ATE + ++ +VRN NS+
Sbjct: 421 ----NDSSLDFNETKGIYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVIR 476
Query: 557 -------------NKFHLTVHFSPL-------NKYFLLMKGAPEVIMERCTTMMAESDKE 596
++ ++V+ SP NK F+ KGAPE +++RC + + +
Sbjct: 477 QLMKKEFTLEFSRDRKSMSVYCSPAKSRAAVGNKMFV--KGAPEGVIDRCNYVRVGTTR- 533
Query: 597 AFLTAEKKYELEDKIKLFASKGE--RVLAFADLHLGQNNFPVNFKFSTDPMNFPSSGFRL 654
+T K ++ IK + + + R LA A + ST M + +
Sbjct: 534 VPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSTKFMEY-ETDLTF 592
Query: 655 IGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHILSETSS-DDNVF 713
+G++ + DPPR V +I C AGIRVIM+TGD+ TA AI + I E D +
Sbjct: 593 VGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEDVADRAY 652
Query: 714 TGTDLRKITDEELKDILETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGDGVNDAPAL 773
TG + + E ++ + FAR P K +IVE QS DEI A+TGDGVNDAPAL
Sbjct: 653 TGREFDDLPLAEQRE--ACRRACCFARVEPTHKSKIVEYLQSFDEITAMTGDGVNDAPAL 710
Query: 774 KKADIGIAMGITGSEVSKQTADMILMDDNFASIVLGIEEGRLIFDNLKKSIAYILASNIP 833
KKA+IGIAMG +G+ V+K ++M+L DDNF++IV +EEGR I++N+K+ I Y+++SN+
Sbjct: 711 KKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVG 769
Query: 834 EILPFLFYIFLGIPLPVSTVTVLCIDLGTDMWPAVSLAYEKPESNIMSREPRNPRTDHLV 893
E++ LG+P + V +L ++L TD PA +L + P+ +IM R PR P+ +
Sbjct: 770 EVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRTPKEPLIS 829
Query: 894 GRKLVTYAYFHLG 906
G + + Y +G
Sbjct: 830 G--WLFFRYMAIG 840
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 334 bits (856), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 270/868 (31%), Positives = 424/868 (48%), Gaps = 108/868 (12%)
Query: 116 HLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYVLVGYIFRGFSA- 174
H EE + GL+ +VKR LEK G N LP + +++ LV F
Sbjct: 6 HSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEG-KSLWELVIEQFEDLLVR 64
Query: 175 LLWFGALLSF-LAYLLEAE---TNEEKPQDNLWLGIILALTCIVTGMFSFYQERKSSHIT 230
+L A +SF LA+ E E T +P ++ L I + +QER + +
Sbjct: 65 ILLLAACISFVLAWFEEGEETITAFVEP-------FVILLILIANAIVGVWQERNAENAI 117
Query: 231 ESFAKMIPTRATVIR--NGSVKEIDSAGLVRGDIVLLKIGDKVPADIRLIEIQD--LKAE 286
E+ + P V R SV+ I + +V GDIV + +GDKVPADIR++ I+ L+ +
Sbjct: 118 EALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVD 177
Query: 287 NSSLTGE-VEPVTCTLGATNSFAV--ESRNLVFFSTNLVSGSGKGVVILTGSNTVMGKIA 343
S LTGE V + T + AV + +N++F TN+ +G G+V TG +T +GKI
Sbjct: 178 QSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIR 237
Query: 344 GLTNRLEKKTTPIEQEVQHF---------MRLISMWALTLGAICFLLALYIGYNWLNACV 394
E+ TP++Q++ F + +++W + +G F ++ G +W+ +
Sbjct: 238 DQMAATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGH--FNDPVH-GGSWIRGAI 294
Query: 395 YVI----GIIVANVPEGXXXXXXXXXXXXXKRLASKNCIVRRLQTVETLGSIRTICTDKT 450
Y + VA +PEG +R+A KN IVR L +VETLG IC+DKT
Sbjct: 295 YYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKT 354
Query: 451 GTLTQNKMTVLHLSFNREIYHVKNGVDVDIQNFE----TNTTYKT--------------- 491
GTLT N+M+V + + + VD D + T +TY
Sbjct: 355 GTLTTNQMSVCKM-------FIIDKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSGQ 407
Query: 492 ---LVRAACLCSKAEFEPNQDNIPMRERKAS----GDATEVGILHFIQPRIKSIQDVRN- 543
LV A +C+ N ++ E K G+ATE + ++ +VRN
Sbjct: 408 FDGLVELATICALC----NDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNL 463
Query: 544 -----------TFPKVTEVPFN---SLNKFHLTVHFSPL--------NKYFLLMKGAPEV 581
++ + F S ++ ++V+ SP NK F+ KGAPE
Sbjct: 464 SKVERANACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFV--KGAPEG 521
Query: 582 IMERCTTMMAESDKEAFLTAEKKYELEDKIKLFASKGE--RVLAFADLHLGQNNFPVNFK 639
+++RC + + + +T K ++ IK + + + R LA A +
Sbjct: 522 VIDRCNYVRVGTTRVP-MTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLD 580
Query: 640 FSTDPMNFPSSGFRLIGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIK 699
S+ M + + +G++ + DPPR V +I C AGIRVIM+TGD+ TA AI +
Sbjct: 581 DSSRFMEY-ETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRR 639
Query: 700 CHILSETSS-DDNVFTGTDLRKITDEELKDILETNKELVFARTSPLQKLRIVELYQSLDE 758
I E D +TG + + E ++ + FAR P K +IVE QS DE
Sbjct: 640 IGIFGENEEVADRAYTGREFDDLPLAEQRE--ACRRACCFARVEPSHKSKIVEYLQSYDE 697
Query: 759 IVAVTGDGVNDAPALKKADIGIAMGITGSEVSKQTADMILMDDNFASIVLGIEEGRLIFD 818
I A+TGDGVNDAPALKKA+IGIAMG +G+ V+K ++M+L DDNF++IV +EEGR I++
Sbjct: 698 ITAMTGDGVNDAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYN 756
Query: 819 NLKKSIAYILASNIPEILPFLFYIFLGIPLPVSTVTVLCIDLGTDMWPAVSLAYEKPESN 878
N+K+ I Y+++SN+ E++ LG+P + V +L ++L TD PA +L + P+ +
Sbjct: 757 NMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLD 816
Query: 879 IMSREPRNPRTDHLVGRKLVTYAYFHLG 906
IM R PR+P+ + G + + Y +G
Sbjct: 817 IMDRPPRSPKEPLISG--WLFFRYMAIG 842
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 334 bits (856), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 270/868 (31%), Positives = 424/868 (48%), Gaps = 108/868 (12%)
Query: 116 HLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYVLVGYIFRGFSA- 174
H EE + GL+ +VKR LEK G N LP + +++ LV F
Sbjct: 5 HSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEG-KSLWELVIEQFEDLLVR 63
Query: 175 LLWFGALLSF-LAYLLEAE---TNEEKPQDNLWLGIILALTCIVTGMFSFYQERKSSHIT 230
+L A +SF LA+ E E T +P ++ L I + +QER + +
Sbjct: 64 ILLLAACISFVLAWFEEGEETITAFVEP-------FVILLILIANAIVGVWQERNAENAI 116
Query: 231 ESFAKMIPTRATVIR--NGSVKEIDSAGLVRGDIVLLKIGDKVPADIRLIEIQD--LKAE 286
E+ + P V R SV+ I + +V GDIV + +GDKVPADIR++ I+ L+ +
Sbjct: 117 EALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVD 176
Query: 287 NSSLTGE-VEPVTCTLGATNSFAV--ESRNLVFFSTNLVSGSGKGVVILTGSNTVMGKIA 343
S LTGE V + T + AV + +N++F TN+ +G G+V TG +T +GKI
Sbjct: 177 QSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIR 236
Query: 344 GLTNRLEKKTTPIEQEVQHF---------MRLISMWALTLGAICFLLALYIGYNWLNACV 394
E+ TP++Q++ F + +++W + +G F ++ G +W+ +
Sbjct: 237 DQMAATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGH--FNDPVH-GGSWIRGAI 293
Query: 395 YVI----GIIVANVPEGXXXXXXXXXXXXXKRLASKNCIVRRLQTVETLGSIRTICTDKT 450
Y + VA +PEG +R+A KN IVR L +VETLG IC+DKT
Sbjct: 294 YYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKT 353
Query: 451 GTLTQNKMTVLHLSFNREIYHVKNGVDVDIQNFE----TNTTYKT--------------- 491
GTLT N+M+V + + + VD D + T +TY
Sbjct: 354 GTLTTNQMSVCKM-------FIIDKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSGQ 406
Query: 492 ---LVRAACLCSKAEFEPNQDNIPMRERKAS----GDATEVGILHFIQPRIKSIQDVRN- 543
LV A +C+ N ++ E K G+ATE + ++ +VRN
Sbjct: 407 FDGLVELATICALC----NDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNL 462
Query: 544 -----------TFPKVTEVPFN---SLNKFHLTVHFSPL--------NKYFLLMKGAPEV 581
++ + F S ++ ++V+ SP NK F+ KGAPE
Sbjct: 463 SKVERANACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFV--KGAPEG 520
Query: 582 IMERCTTMMAESDKEAFLTAEKKYELEDKIKLFASKGE--RVLAFADLHLGQNNFPVNFK 639
+++RC + + + +T K ++ IK + + + R LA A +
Sbjct: 521 VIDRCNYVRVGTTRVP-MTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLD 579
Query: 640 FSTDPMNFPSSGFRLIGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIK 699
S+ M + + +G++ + DPPR V +I C AGIRVIM+TGD+ TA AI +
Sbjct: 580 DSSRFMEY-ETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRR 638
Query: 700 CHILSETSS-DDNVFTGTDLRKITDEELKDILETNKELVFARTSPLQKLRIVELYQSLDE 758
I E D +TG + + E ++ + FAR P K +IVE QS DE
Sbjct: 639 IGIFGENEEVADRAYTGREFDDLPLAEQRE--ACRRACCFARVEPSHKSKIVEYLQSYDE 696
Query: 759 IVAVTGDGVNDAPALKKADIGIAMGITGSEVSKQTADMILMDDNFASIVLGIEEGRLIFD 818
I A+TGDGVNDAPALKKA+IGIAMG +G+ V+K ++M+L DDNF++IV +EEGR I++
Sbjct: 697 ITAMTGDGVNDAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYN 755
Query: 819 NLKKSIAYILASNIPEILPFLFYIFLGIPLPVSTVTVLCIDLGTDMWPAVSLAYEKPESN 878
N+K+ I Y+++SN+ E++ LG+P + V +L ++L TD PA +L + P+ +
Sbjct: 756 NMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLD 815
Query: 879 IMSREPRNPRTDHLVGRKLVTYAYFHLG 906
IM R PR+P+ + G + + Y +G
Sbjct: 816 IMDRPPRSPKEPLISG--WLFFRYMAIG 841
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 331 bits (849), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 269/868 (30%), Positives = 423/868 (48%), Gaps = 108/868 (12%)
Query: 116 HLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYVLVGYIFRGFSA- 174
H EE + GL+ +VKR LEK G N LP + +++ LV F
Sbjct: 5 HSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEG-KSLWELVIEQFEDLLVR 63
Query: 175 LLWFGALLSF-LAYLLEAE---TNEEKPQDNLWLGIILALTCIVTGMFSFYQERKSSHIT 230
+L A +SF LA+ E E T +P ++ L I + +QER + +
Sbjct: 64 ILLLAACISFVLAWFEEGEETITAFVEP-------FVILLILIANAIVGVWQERNAENAI 116
Query: 231 ESFAKMIPTRATVIR--NGSVKEIDSAGLVRGDIVLLKIGDKVPADIRLIEIQD--LKAE 286
E+ + P V R SV+ I + +V GDIV + +GDKVPADIR++ I+ L+ +
Sbjct: 117 EALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVD 176
Query: 287 NSSLTGE-VEPVTCTLGATNSFAV--ESRNLVFFSTNLVSGSGKGVVILTGSNTVMGKIA 343
S LTGE V + T + AV + +N++F TN+ +G G+V TG +T +GKI
Sbjct: 177 QSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIR 236
Query: 344 GLTNRLEKKTTPIEQEVQHF---------MRLISMWALTLGAICFLLALYIGYNWLNACV 394
E+ TP++Q++ F + +++W + +G F ++ G +W+ +
Sbjct: 237 DQMAATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGH--FNDPVH-GGSWIRGAI 293
Query: 395 YVI----GIIVANVPEGXXXXXXXXXXXXXKRLASKNCIVRRLQTVETLGSIRTICTDKT 450
Y + VA +PEG +R+A KN IVR L +VETLG IC+ KT
Sbjct: 294 YYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSXKT 353
Query: 451 GTLTQNKMTVLHLSFNREIYHVKNGVDVDIQNFE----TNTTYKT--------------- 491
GTLT N+M+V + + + VD D + T +TY
Sbjct: 354 GTLTTNQMSVCKM-------FIIDKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSGQ 406
Query: 492 ---LVRAACLCSKAEFEPNQDNIPMRERKAS----GDATEVGILHFIQPRIKSIQDVRN- 543
LV A +C+ N ++ E K G+ATE + ++ +VRN
Sbjct: 407 FDGLVELATICALC----NDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNL 462
Query: 544 -----------TFPKVTEVPFN---SLNKFHLTVHFSPL--------NKYFLLMKGAPEV 581
++ + F S ++ ++V+ SP NK F+ KGAPE
Sbjct: 463 SKVERANACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFV--KGAPEG 520
Query: 582 IMERCTTMMAESDKEAFLTAEKKYELEDKIKLFASKGE--RVLAFADLHLGQNNFPVNFK 639
+++RC + + + +T K ++ IK + + + R LA A +
Sbjct: 521 VIDRCNYVRVGTTRVP-MTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLD 579
Query: 640 FSTDPMNFPSSGFRLIGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIK 699
S+ M + + +G++ + DPPR V +I C AGIRVIM+TGD+ TA AI +
Sbjct: 580 DSSRFMEY-ETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRR 638
Query: 700 CHILSETSS-DDNVFTGTDLRKITDEELKDILETNKELVFARTSPLQKLRIVELYQSLDE 758
I E D +TG + + E ++ + FAR P K +IVE QS DE
Sbjct: 639 IGIFGENEEVADRAYTGREFDDLPLAEQRE--ACRRACCFARVEPSHKSKIVEYLQSYDE 696
Query: 759 IVAVTGDGVNDAPALKKADIGIAMGITGSEVSKQTADMILMDDNFASIVLGIEEGRLIFD 818
I A+TGDGVNDAPALKKA+IGIAMG +G+ V+K ++M+L DDNF++IV +EEGR I++
Sbjct: 697 ITAMTGDGVNDAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYN 755
Query: 819 NLKKSIAYILASNIPEILPFLFYIFLGIPLPVSTVTVLCIDLGTDMWPAVSLAYEKPESN 878
N+K+ I Y+++SN+ E++ LG+P + V +L ++L TD PA +L + P+ +
Sbjct: 756 NMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLD 815
Query: 879 IMSREPRNPRTDHLVGRKLVTYAYFHLG 906
IM R PR+P+ + G + + Y +G
Sbjct: 816 IMDRPPRSPKEPLISG--WLFFRYMAIG 841
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 213 bits (542), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 203/752 (26%), Positives = 344/752 (45%), Gaps = 102/752 (13%)
Query: 101 VAQLRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINN 160
++ L D+KNE +D IP+EE++ L + GL+ E + R++ GPN L +K + +
Sbjct: 1 MSSLEDIKNET-VDLEKIPIEEVFQQLKCSRE-GLTTQEGEDRIQIFGPNKLEEK-KESK 57
Query: 161 VYVLVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQD-NLWLGIILALTCIVTGMFS 219
+ +G+++ S W + + + +P D ++GII L ++ S
Sbjct: 58 LLKFLGFMWNPLS---W--VMEMAAIMAIALANGDGRPPDWQDFVGIICLL--VINSTIS 110
Query: 220 FYQERKSSHITESFAKMIPTRATVIRNGSVKEIDSAGLVRGDIVLLKIGDKVPADIRLIE 279
F +E + + + + + V+R+G E ++A LV GDIV +K+GD +PAD RL+E
Sbjct: 111 FIEENNAGNAAAALMAGLAPKTKVLRDGKWSEQEAAILVPGDIVSIKLGDIIPADARLLE 170
Query: 280 IQDLKAENSSLTGEVEPVTCTLGATNSFAVESRNLVFFSTNLVSGSGKGVVILTGSNTVM 339
LK + S+LTGE PVT G VF + G + VVI TG +T
Sbjct: 171 GDPLKVDQSALTGESLPVTKHPGQE----------VFSGSTCKQGEIEAVVIATGVHTFF 220
Query: 340 GKIAGLTNRLEKKTTPIEQEVQHFMRLIS------MWALTLGAICFLLALY--IGYNWLN 391
GK A L + +V HF ++++ + ++ +G + ++ +Y + +
Sbjct: 221 GKAAHLVDS--------TNQVGHFQKVLTAIGNFCICSIAIGMVIEIIVMYPIQRRKYRD 272
Query: 392 ACVYVIGIIVANVPEGXXXXXXXXXXXXXKRLASKNCIVRRLQTVETLGSIRTICTDKTG 451
++ +++ +P RL+ + I +R+ +E + + +C+DKTG
Sbjct: 273 GIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTG 332
Query: 452 TLTQNKMTVLHLSFNREIYHVKNGVDVDIQNFETNTTYKTLVRAACLCSKAEFEPNQDNI 511
TLT NK++V KN V+V + E + ++ A + S+ E NQD I
Sbjct: 333 TLTLNKLSV-----------DKNLVEVFCKGVEKD----QVLLFAAMASRVE---NQDAI 374
Query: 512 PMRERKASGDATEVGILHFIQPRIKSIQDVRNTFPKVTEVPFNSLNKFHLTVHFSPLNKY 571
DA VG+L P+ + R +V +PFN ++K + +
Sbjct: 375 ---------DAAMVGMLA--DPK-----EARAGIREVHFLPFNPVDKRTALTYIDGSGNW 418
Query: 572 FLLMKGAPEVIMERCTTMMAESDKEAFLTAEKKYELEDKIKLFASKGERVLAFADLHLGQ 631
+ KGAPE I+E +A++ + ++K + DK +A +G R LA A +
Sbjct: 419 HRVSKGAPEQILE-----LAKASND---LSKKVLSIIDK---YAERGLRSLAVA-----R 462
Query: 632 NNFPVNFKFSTDPMNFPSSGFRLIGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPC 691
P K S P + + +GL+ L+DPPR + I G+ V M+TGD
Sbjct: 463 QVVPEKTKES------PGAPWEFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLA 516
Query: 692 TAKAIAIKCHI---LSETSSDDNVFTGTDLRKITDEELKDILETNKELVFARTSPLQKLR 748
K + + + +S+ +L I EEL K FA P K
Sbjct: 517 IGKETGRRLGMGTNMYPSSALLGTHKDANLASIPVEEL-----IEKADGFAGVFPEHKYE 571
Query: 749 IVELYQSLDEIVAVTGDGVNDAPALKKADIGIAMGITGSEVSKQTADMILMDDNFASIVL 808
IV+ Q IV +TGDGVNDAPALKKADIGIA+ ++ ++ +D++L + + I+
Sbjct: 572 IVKKLQERKHIVGMTGDGVNDAPALKKADIGIAVA-DATDAARGASDIVLTEPGLSVIIS 630
Query: 809 GIEEGRLIFDNLKKSIAYILASNIPEILPFLF 840
+ R IF +K Y ++ I + F+
Sbjct: 631 AVLTSRAIFQRMKNYTIYAVSITIRIVFGFML 662
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 181 bits (458), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 193/745 (25%), Positives = 330/745 (44%), Gaps = 108/745 (14%)
Query: 126 ILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYVLVGYIFRGFSALLWFGALLSFL 185
+L T GL+ EV +R K G N + ++ + N+ +G+ F G + GA + L
Sbjct: 79 MLQTDTRVGLTSEEVVQRRRKYGLNQMKEE-KENHFLKFLGF-FVGPIQFVMEGA--AVL 134
Query: 186 AYLLEAETNEEKPQDNLWLGIILALTCIVTGMFSFYQERKSSHITESFAKMIPTRATVIR 245
A LE D + G+I L ++ + F QE ++ I + K + +A V+R
Sbjct: 135 AAGLE---------DWVDFGVICGL-LLLNAVVGFVQEFQAGSIVDELKKTLALKAVVLR 184
Query: 246 NGSVKEIDSAGLVRGDIVLLKIGDKVPADIRLI-EIQDLKAENSSLTGEVEPVTCTLGAT 304
+G++KEI++ +V GDI+ ++ G +PAD R++ + L+ + S+LTGE
Sbjct: 185 DGTLKEIEAPEVVPGDILQVEEGTIIPADGRIVTDDAFLQVDQSALTGE----------- 233
Query: 305 NSFAVESR--NLVFFSTNLVSGSGKGVVILTGSNTVMGKIAGLTNRLEKKTTPIEQEVQH 362
S AV+ + VF S+ + G V+ TG NT +G+ A L N + + +
Sbjct: 234 -SLAVDKHKGDQVFASSAVKRGEAFVVITATGDNTFVGRAAALVNAASGGSGHFTEVLNG 292
Query: 363 FMRLISMWALTLGAICFLLALYIGYNWLNACVYVIGIIVANVPEGXXXXXXXXXXXXXKR 422
++ + + I ++ + Y + + + I + VP G
Sbjct: 293 IGTILLILVIFTLLIVWVSSFYRSNPIVQILEFTLAITIIGVPVGLPAVVTTTMAVGAAY 352
Query: 423 LASKNCIVRRLQTVETLGSIRTICTDKTGTLTQNKMTVLHLSFNREIYHVKNGVDVDIQN 482
LA K IV++L +E+L + +C+DKTGTLT+NK++ LH + Y V GVD +
Sbjct: 353 LAKKKAIVQKLSAIESLAGVEILCSDKTGTLTKNKLS-LH-----DPYTVA-GVDPE--- 402
Query: 483 FETNTTYKTLVRAACLCSKAEFEPNQDNIPMRERKASG-DATEVGILHFIQ--PRIKSIQ 539
L+ ACL + RK G DA + L ++ PR KS
Sbjct: 403 --------DLMLTACLAAS--------------RKKKGIDAIDKAFLKSLKYYPRAKS-- 438
Query: 540 DVRNTFPKVTEVPFNSLNKFHLTVHFSPLNKYFLLMKGAPEVIMERCTTMMAESDKEAFL 599
V + + + PF+ ++K + V SP + +KGAP +++ E D
Sbjct: 439 -VLSKYKVLQFHPFDPVSKKVVAVVESPQGERITCVKGAPLFVLKTV-----EEDHPIPE 492
Query: 600 TAEKKYELEDKIKLFASKGERVLAFADLHLGQNNFPVNFKFSTDPMNFPSSGFRLIGLIS 659
++ Y+ +K+ FA++G R L A G+ ++ ++G++
Sbjct: 493 EVDQAYK--NKVAEFATRGFRSLGVARKR-GEGSW------------------EILGIMP 531
Query: 660 LYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHILSETSSDDNVFTG---- 715
DPPR + G+ + M+TGD A+ I + N++
Sbjct: 532 CMDPPRHDTYKTVCEAKTLGLSIKMLTGD------AVGIARETSRQLGLGTNIYNAERLG 585
Query: 716 -TDLRKITDEELKDILETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGDGVNDAPALK 774
+ E+ D +E FA P K +VE+ Q +VA+TGDGVNDAP+LK
Sbjct: 586 LGGGGDMPGSEVYDFVEAADG--FAEVFPQHKYNVVEILQQRGYLVAMTGDGVNDAPSLK 643
Query: 775 KADIGIAMGITGSEVSKQTADMILMDDNFASIVLGIEEGRLIFDNLKKSIAYILASNIP- 833
KAD GIA+ S+ ++ AD++ + +I+ ++ R IF + + Y +A +I
Sbjct: 644 KADTGIAVE-GSSDAARSAADIVFLAPGLGAIIDALKTSRQIFHRMYAYVVYRIALSIHL 702
Query: 834 EILPFLFYIFLGIPLPVSTVTVLCI 858
EI L+ L L + V + I
Sbjct: 703 EIFLGLWIAILNRSLNIELVVFIAI 727
>pdb|1MO7|A Chain A, Atpase
pdb|1MO8|A Chain A, Atpase
Length = 213
Score = 156 bits (394), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 84/218 (38%), Positives = 128/218 (58%), Gaps = 13/218 (5%)
Query: 455 QNKMTVLHLSFNREIYHV-----KNGVDVDIQNFETNTTYKTLVRAACLCSKAEFEPNQD 509
QN MTV H+ F+ +I+ ++GV D +T+ T+ L R A LC++A F+ NQ+
Sbjct: 1 QNPMTVAHMWFDNQIHEADTTENQSGVSFD----KTSATWFALSRIAGLCNRAVFQANQE 56
Query: 510 NIPMRERKASGDATEVGILHFIQPRIKSIQDVRNTFPKVTEVPFNSLNKFHLTVHFSP-- 567
N+P+ +R +GDA+E +L I+ S+ ++R + K+ E+PFNS NK+ L++H +P
Sbjct: 57 NLPILKRAVAGDASESALLKCIEVCCGSVMEMREKYTKIVEIPFNSTNKYQLSIHKNPNA 116
Query: 568 -LNKYFLLMKGAPEVIMERCTTMMAESDKEAFLTAEKKYELEDKIKLFASKGERVLAFAD 626
K+ L+MKGAPE I++RC++++ KE L E K ++ GERVL F
Sbjct: 117 SEPKHLLVMKGAPERILDRCSSILLHG-KEQPLDEELKDAFQNAYLELGGLGERVLGFCH 175
Query: 627 LHLGQNNFPVNFKFSTDPMNFPSSGFRLIGLISLYDPP 664
L L FP F+F TD +NFP +GLIS+ DPP
Sbjct: 176 LLLPDEQFPEGFQFDTDEVNFPVDNLCFVGLISMIDPP 213
>pdb|1Q3I|A Chain A, Crystal Structure Of Na,K-Atpase N-Domain
Length = 214
Score = 142 bits (359), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 119/208 (57%), Gaps = 4/208 (1%)
Query: 458 MTVLHLSFNREIYHVKNGVDVDIQNFETNT-TYKTLVRAACLCSKAEFEPNQDNIPMRER 516
MTV H+ F+ +I+ D F+ + T+ L R A LC++A F+ Q+NI + +R
Sbjct: 2 MTVAHMWFDNQIHEADTTEDQSGATFDKRSPTWTALSRIAGLCNRAVFKAGQENISVSKR 61
Query: 517 KASGDATEVGILHFIQPRIKSIQDVRNTFPKVTEVPFNSLNKFHLTVHFSPLN--KYFLL 574
+GDA+E +L I+ S++ +R+ PKV E+ FNS NK+ L++H N + L+
Sbjct: 62 DTAGDASESALLKCIELSCGSVRKMRDRNPKVAEISFNSTNKYQLSIHEREDNPQSHVLV 121
Query: 575 MKGAPEVIMERCTTMMAESDKEAFLTAEKKYELEDKIKLFASKGERVLAFADLHLGQNNF 634
MKGAPE I++RC++++ + KE L E + ++ GERVL F L+L F
Sbjct: 122 MKGAPERILDRCSSILVQG-KEIPLDKEMQDAFQNAYLELGGLGERVLGFCQLNLPSGKF 180
Query: 635 PVNFKFSTDPMNFPSSGFRLIGLISLYD 662
P FKF TD +NFP+ +GL+S+ D
Sbjct: 181 PRGFKFDTDELNFPTEKLCFVGLMSMID 208
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 86.7 bits (213), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 109/216 (50%), Gaps = 45/216 (20%)
Query: 653 RLIGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHILSETSSDDNV 712
R+ G+I++ D + + A+ + GI+V M+TGD+ +A+AI+
Sbjct: 525 RVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAIS--------------- 569
Query: 713 FTGTDLRKITDEELKDILETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGDGVNDAPA 772
E N +LV A P QK V+ Q+ E+VA GDG+NDAPA
Sbjct: 570 -----------------RELNLDLVIAEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPA 611
Query: 773 LKKADIGIAMGITGSEVSKQTADMILMDDNFASIVLGIEEGRLIFDNLKKSIAYILASN- 831
L +AD+GIA+G +GS+V+ ++ D++L+ D+ +V I+ R +K++I + L N
Sbjct: 612 LAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWALIYNV 670
Query: 832 --IPEILPFLFYI--------FLGIPLPVSTVTVLC 857
IP L+ I F G+ + +S+V+V+
Sbjct: 671 ILIPAAAGLLYPIFGVVFRPEFAGLAMAMSSVSVVA 706
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 105/250 (42%), Gaps = 23/250 (9%)
Query: 222 QERKSSHITESFAKMIPTRA---TVIRNGSVKEIDSAGLVRGDIVLLKIGDKVPADIRLI 278
+ R S E+ K++ +A VIR+G + + GDIV+++ G+K+P D ++
Sbjct: 191 EARAKSRTGEAIKKLVGLQAKTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVV 250
Query: 279 EIQDLKAENSSLTGEVEPVTCTLGATNSFAVESRNLVFFSTNLVSGSGKGVVILTGSNTV 338
E + + S ++GE PV + G + VF +T +G K G T+
Sbjct: 251 EGESY-VDESMISGEPVPVLKSKG----------DEVFGATINNTGVLKIRATRVGGETL 299
Query: 339 MGKIAGLTNRLEKKTTPIE----QEVQHFMRLISMWALTLGAICFLLALYIGYN-WLNAC 393
+ +I L PI+ + V +F+ + + A++ F+ +I + L A
Sbjct: 300 LAQIVKLVEDAMGSKPPIQRLADKVVAYFIPTVLLVAIS----AFIYWYFIAHAPLLFAF 355
Query: 394 VYVIGIIVANVPEGXXXXXXXXXXXXXKRLASKNCIVRRLQTVETLGSIRTICTDKTGTL 453
+I ++V P + A +++ +E + + DKTGTL
Sbjct: 356 TTLIAVLVVACPCAFGLATPTALTVGMGKGAELGILIKNADALEVAEKVTAVIFDKTGTL 415
Query: 454 TQNKMTVLHL 463
T+ K V L
Sbjct: 416 TKGKPEVTDL 425
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 86.3 bits (212), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 109/216 (50%), Gaps = 45/216 (20%)
Query: 653 RLIGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHILSETSSDDNV 712
R+ G+I++ D + + A+ + GI+V M+TGD+ +A+AI+
Sbjct: 447 RVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAIS--------------- 491
Query: 713 FTGTDLRKITDEELKDILETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGDGVNDAPA 772
E N +LV A P QK V+ Q+ E+VA GDG+NDAPA
Sbjct: 492 -----------------RELNLDLVIAEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPA 533
Query: 773 LKKADIGIAMGITGSEVSKQTADMILMDDNFASIVLGIEEGRLIFDNLKKSIAYILASN- 831
L +AD+GIA+G +GS+V+ ++ D++L+ D+ +V I+ R +K++I + L N
Sbjct: 534 LAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWALIYNV 592
Query: 832 --IPEILPFLFYI--------FLGIPLPVSTVTVLC 857
IP L+ I F G+ + +S+V+V+
Sbjct: 593 ILIPAAAGLLYPIFGVVFRPEFAGLAMAMSSVSVVA 628
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 105/250 (42%), Gaps = 23/250 (9%)
Query: 222 QERKSSHITESFAKMIPTRA---TVIRNGSVKEIDSAGLVRGDIVLLKIGDKVPADIRLI 278
+ R S E+ K++ +A VIR+G + + GDIV+++ G+K+P D ++
Sbjct: 113 EARAKSRTGEAIKKLVGLQAKTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVV 172
Query: 279 EIQDLKAENSSLTGEVEPVTCTLGATNSFAVESRNLVFFSTNLVSGSGKGVVILTGSNTV 338
E + + S ++GE PV + G + VF +T +G K G T+
Sbjct: 173 EGESY-VDESMISGEPVPVLKSKG----------DEVFGATINNTGVLKIRATRVGGETL 221
Query: 339 MGKIAGLTNRLEKKTTPIE----QEVQHFMRLISMWALTLGAICFLLALYIGYN-WLNAC 393
+ +I L PI+ + V +F+ + + A++ F+ +I + L A
Sbjct: 222 LAQIVKLVEDAMGSKPPIQRLADKVVAYFIPTVLLVAIS----AFIYWYFIAHAPLLFAF 277
Query: 394 VYVIGIIVANVPEGXXXXXXXXXXXXXKRLASKNCIVRRLQTVETLGSIRTICTDKTGTL 453
+I ++V P + A +++ +E + + DKTGTL
Sbjct: 278 TTLIAVLVVACPCAFGLATPTALTVGMGKGAELGILIKNADALEVAEKVTAVIFDKTGTL 337
Query: 454 TQNKMTVLHL 463
T+ K V L
Sbjct: 338 TKGKPEVTDL 347
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 108/221 (48%), Gaps = 48/221 (21%)
Query: 653 RLIGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHILSETSSDDNV 712
+ + L+ + DP + + P+ I ++GI ++M+TGD TA+A+A
Sbjct: 544 KTVALLVVEDPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVA--------------- 588
Query: 713 FTGT-DLRKITDEELKDILETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGDGVNDAP 771
GT ++K+ E + P K RIV + IVA+ GDGVNDAP
Sbjct: 589 --GTLGIKKVVAEIM----------------PEDKSRIVSELKDKGLIVAMAGDGVNDAP 630
Query: 772 ALKKADIGIAMGITGSEVSKQTADMILMDDNFASIVLGIEEGRLIFDNLKKSIAYILASN 831
AL KADIGIAMG TG++V+ ++A + L+ + GI + R + ++ SN
Sbjct: 631 ALAKADIGIAMG-TGTDVAIESAGVTLLHGDLR----GIAKARRLSESTM--------SN 677
Query: 832 IPEILPFLF-YIFLGIPLPVSTVTVLCIDLGTDMWPAVSLA 871
I + L F F Y LG+PL + L L + M A ++A
Sbjct: 678 IRQNLFFAFIYNVLGVPLAAGVLYPLTGLLLSPMIAAAAMA 718
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 52/244 (21%), Positives = 108/244 (44%), Gaps = 27/244 (11%)
Query: 222 QERKSSHITESFAKMIPTRATVIR-NGSVKEIDSAGLVRGDIVLLKIGDKVPADIRLIEI 280
+E+ S I + K++P A I+ +GS +E+ + GD++ ++ G+K+P D E+
Sbjct: 209 REQTGSAI-RALLKLVPESAHRIKEDGSEEEVSLDNVAVGDLLRVRPGEKIPVDG---EV 264
Query: 281 QDLKA--ENSSLTGEVEPVTCTLGATNSFAVESRNLVFFSTNLVSGSGKGVVILTGSNTV 338
Q+ ++ + S +TGE PV A E+ V +T +GS + GS+T+
Sbjct: 265 QEGRSFVDESMVTGEPIPV----------AKEASAKVIGATINQTGSFVMKALHVGSDTM 314
Query: 339 MGKIAGLTNRLEKKTTPIEQEVQHFMRLISMW----ALTLGAICFLLALYIGYN--WLNA 392
+ +I + + ++ PI Q +S W + + + F++ +G
Sbjct: 315 LARIVQMVSDAQRSRAPI----QRLADTVSGWFVPAVILVAVLSFIVWALLGPQPALSYG 370
Query: 393 CVYVIGIIVANVPEGXXXXXXXXXXXXXKRLASKNCIVRRLQTVETLGSIRTICTDKTGT 452
+ + +++ P + A +++ + +E + + T+ DKTGT
Sbjct: 371 LIAAVSVLIIACPCALGLATPMSIMVGVGKGAQSGVLIKNAEALERMEKVNTLVVDKTGT 430
Query: 453 LTQN 456
LT+
Sbjct: 431 LTEG 434
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 79.7 bits (195), Expect = 7e-15, Method: Composition-based stats.
Identities = 53/169 (31%), Positives = 87/169 (51%), Gaps = 34/169 (20%)
Query: 653 RLIGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHILSETSSDDNV 712
R+ G+I++ D + + A+ + GI+V M+TGD+ +A+AI+
Sbjct: 153 RVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAIS--------------- 197
Query: 713 FTGTDLRKITDEELKDILETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGDGVNDAPA 772
E N +LV A P QK V+ Q+ E+VA GDG+NDAPA
Sbjct: 198 -----------------RELNLDLVIAEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPA 239
Query: 773 LKKADIGIAMGITGSEVSKQTADMILMDDNFASIVLGIEEGRLIFDNLK 821
L +AD+GIA+G +GS+V+ ++ D++L+ D+ +V I+ R +K
Sbjct: 240 LAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 79.7 bits (195), Expect = 7e-15, Method: Composition-based stats.
Identities = 53/169 (31%), Positives = 87/169 (51%), Gaps = 34/169 (20%)
Query: 653 RLIGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHILSETSSDDNV 712
R+ G+I++ D + + A+ + GI+V M+TGD+ +A+AI+
Sbjct: 153 RVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAIS--------------- 197
Query: 713 FTGTDLRKITDEELKDILETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGDGVNDAPA 772
E N +LV A P QK V+ Q+ E+VA GDG+NDAPA
Sbjct: 198 -----------------RELNLDLVIAEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPA 239
Query: 773 LKKADIGIAMGITGSEVSKQTADMILMDDNFASIVLGIEEGRLIFDNLK 821
L +AD+GIA+G +GS+V+ ++ D++L+ D+ +V I+ R +K
Sbjct: 240 LAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 76.3 bits (186), Expect = 9e-14, Method: Composition-based stats.
Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 34/162 (20%)
Query: 653 RLIGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHILSETSSDDNV 712
R+ G+I++ D + + A+ + GI+V +TGD+ +A+AI+
Sbjct: 133 RVEGIIAVSDTLKESAKPAVQELKRXGIKVGXITGDNWRSAEAIS--------------- 177
Query: 713 FTGTDLRKITDEELKDILETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGDGVNDAPA 772
E N +LV A P QK V+ Q+ E+VA GDG+NDAPA
Sbjct: 178 -----------------RELNLDLVIAEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPA 219
Query: 773 LKKADIGIAMGITGSEVSKQTADMILMDDNFASIVLGIEEGR 814
L +AD+GIA+G +GS+V+ ++ D++L+ D+ +V I+ R
Sbjct: 220 LAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSR 260
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 70.9 bits (172), Expect = 3e-12, Method: Composition-based stats.
Identities = 52/166 (31%), Positives = 80/166 (48%), Gaps = 34/166 (20%)
Query: 656 GLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHILSETSSDDNVFTG 715
G+I+L D RP +AI GI+ +M+TGD+ AK +A E DD
Sbjct: 137 GVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVA------EELGLDD----- 185
Query: 716 TDLRKITDEELKDILETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGDGVNDAPALKK 775
FA P +K V+ Q + A+ GDGVNDAPAL +
Sbjct: 186 ---------------------YFAEVLPHEKAEKVKEVQQ-KYVTAMVGDGVNDAPALAQ 223
Query: 776 ADIGIAMGITGSEVSKQTADMILMDDNFASIVLGIEEGRLIFDNLK 821
AD+GIA+G G++V+ +TAD++L+ ++ + +E R + L+
Sbjct: 224 ADVGIAIG-AGTDVAVETADIVLVRNDPRDVAAIVELSRKTYSKLE 268
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 75/148 (50%), Gaps = 36/148 (24%)
Query: 656 GLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHILSETSSDDNVFTG 715
G+I+L D RP +AI GI+ +M+TGD+ AK +A E DD
Sbjct: 137 GVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVA------EELGLDD----- 185
Query: 716 TDLRKITDEELKDILETNKELVFARTSPLQKL-RIVELYQSLDEIVAVTGDGVNDAPALK 774
FA P +K ++ E+ Q + A+ GDGVNDAPAL
Sbjct: 186 ---------------------YFAEVLPHEKAEKVKEVQQKY--VTAMVGDGVNDAPALA 222
Query: 775 KADIGIAMGITGSEVSKQTADMILMDDN 802
+AD+GIA+G G++V+ +TAD++L+ ++
Sbjct: 223 QADVGIAIG-AGTDVAVETADIVLVRND 249
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 60.1 bits (144), Expect = 6e-09, Method: Composition-based stats.
Identities = 47/155 (30%), Positives = 72/155 (46%), Gaps = 46/155 (29%)
Query: 657 LISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHILSETSSDDNVFTGT 716
L L + +PAV + + GI+V +TGD+ +A+AI+
Sbjct: 20 LTKLKESAKPAVQE----LKRXGIKVGXITGDNWRSAEAIS------------------- 56
Query: 717 DLRKITDEELKDILETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGDGVNDAPALKKA 776
E N +LV A P QK V+ Q+ E+VA GDG+NDAPAL +A
Sbjct: 57 -------------RELNLDLVIAEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPALAQA 102
Query: 777 DIGIAMGITGSEVSKQTADMILMDDNFASIVLGIE 811
D+GIA+G + D++L+ D+ +V I+
Sbjct: 103 DLGIAVG---------SGDIVLIRDDLRDVVAAIQ 128
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 75/156 (48%), Gaps = 34/156 (21%)
Query: 659 SLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHILSETSSDDNVFTGTDL 718
++ D PRP + D ++ G+++I+++GD K ++
Sbjct: 132 NISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELS--------------------- 170
Query: 719 RKITDEELKDILETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGDGVNDAPALKKADI 778
E N + ++ SP K+RI+E + V + GDGVNDA AL AD+
Sbjct: 171 -----------KELNIQEYYSNLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAALALADV 219
Query: 779 GIAMGITGSEVSKQTADMILMDDNFASIVLGIEEGR 814
+AMG G ++SK AD+IL+ ++ ++ LG+ + R
Sbjct: 220 SVAMG-NGVDISKNVADIILVSNDIGTL-LGLIKNR 253
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 75/156 (48%), Gaps = 34/156 (21%)
Query: 659 SLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHILSETSSDDNVFTGTDL 718
++ D PRP + D ++ G+++I+++GD K ++
Sbjct: 132 NISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELS--------------------- 170
Query: 719 RKITDEELKDILETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGDGVNDAPALKKADI 778
E N + ++ SP K+RI+E + V + GDGVNDA AL AD+
Sbjct: 171 -----------KELNIQEYYSNLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAALALADV 219
Query: 779 GIAMGITGSEVSKQTADMILMDDNFASIVLGIEEGR 814
+AMG G ++SK AD+IL+ ++ ++ LG+ + R
Sbjct: 220 SVAMG-NGVDISKNVADIILVSNDIGTL-LGLIKNR 253
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 75/156 (48%), Gaps = 34/156 (21%)
Query: 659 SLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHILSETSSDDNVFTGTDL 718
++ D PRP + D ++ G+++I+++GD K ++
Sbjct: 132 NISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELS--------------------- 170
Query: 719 RKITDEELKDILETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGDGVNDAPALKKADI 778
E N + ++ SP K+RI+E + V + GDGVNDA AL AD+
Sbjct: 171 -----------KELNIQEYYSNLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAALALADV 219
Query: 779 GIAMGITGSEVSKQTADMILMDDNFASIVLGIEEGR 814
+AMG G ++SK AD+IL+ ++ ++ LG+ + R
Sbjct: 220 SVAMG-NGVDISKNVADIILVSNDIGTL-LGLIKNR 253
>pdb|2KIJ|A Chain A, Solution Structure Of The Actuator Domain Of The Copper-
Transporting Atpase Atp7a
Length = 124
Score = 37.4 bits (85), Expect = 0.039, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 10/85 (11%)
Query: 229 ITESFAKMIP---TRATVIRNGS------VKEIDSAGLVRGDIVLLKIGDKVPADIRLIE 279
++E+ AK+I T AT++ S +++D + RGDI+ + G K P D R+IE
Sbjct: 5 MSEALAKLISLQATEATIVTLDSDNILLSEEQVDVELVQRGDIIKVVPGGKFPVDGRVIE 64
Query: 280 IQDLKAENSSLTGEVEPVTCTLGAT 304
+ + S +TGE PV G+T
Sbjct: 65 GHSM-VDESLITGEAMPVAKKPGST 88
>pdb|3R4C|A Chain A, Divergence Of Structure And Function Among Phosphatases Of
The Haloalkanoate (Had) Enzyme Superfamily: Analysis Of
Bt1666 From Bacteroides Thetaiotaomicron
Length = 268
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 756 LDEIVAVTGDGVNDAPALKKADIGIAMGITGSEVSKQTADMI 797
+ EI+A GDG ND P LK A IG+AMG SE + AD +
Sbjct: 210 VSEIMA-CGDGGNDIPMLKAAGIGVAMG-NASEKVQSVADFV 249
>pdb|4EX6|A Chain A, Crystal Structure Of The Alnumycin P Phosphatase Alnb
pdb|4EX7|A Chain A, Crystal Structure Of The Alnumycin P Phosphatase In
Complex With Free Phosphate
Length = 237
Score = 35.4 bits (80), Expect = 0.15, Method: Composition-based stats.
Identities = 38/152 (25%), Positives = 61/152 (40%), Gaps = 27/152 (17%)
Query: 666 PAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHILSETSSDDNVFTGTDLRKITDEE 725
P V + +D AG R+ M T A+AIA TG D R
Sbjct: 107 PGVLEGLDRLSAAGFRLAMATSKVEKAARAIA--------------ELTGLDTRLT---- 148
Query: 726 LKDILETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGDGVNDAPALKKAD---IGIAM 782
++ + + + P L + E V GDGV DA + A IG++
Sbjct: 149 ---VIAGDDSVERGKPHPDMALHVARGLGIPPERCVVIGDGVPDAEMGRAAGMTVIGVSY 205
Query: 783 GITG-SEVSKQTADMILMDDNFASIVLGIEEG 813
G++G E+ + AD ++ D+F + V + +G
Sbjct: 206 GVSGPDELMRAGADTVV--DSFPAAVTAVLDG 235
>pdb|4DW8|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Na Crystal Form I
pdb|4DWO|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Mg Crystal Form Ii
Length = 279
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 757 DEIVAVTGDGVNDAPALKKADIGIAMGITGSEVSKQTADMILMDDNFASIVLGIE 811
+E++A+ GDG ND +K A +G+AMG E K+ AD I + ++ + IE
Sbjct: 214 EEVIAI-GDGYNDLSMIKFAGMGVAMG-NAQEPVKKAADYITLTNDEDGVAEAIE 266
>pdb|1BG5|A Chain A, Crystal Structure Of The Ankyrin Binding Domain Of
Alpha-Na, K-Atpase As A Fusion Protein With Glutathione
S-Transferase
Length = 254
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 219 SFYQERKSSHITESFAKMIPTRATV 243
S+YQE KSS I ESF M+P +A V
Sbjct: 227 SYYQEAKSSKIMESFKNMVPQQALV 251
>pdb|2B4W|A Chain A, Hypothetical Protein From Leishmania Major
Length = 315
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 636 VNFKFSTDPMNFPSSGFRLIGLISLYDPPRPAVPDAIDACHKAGI 680
VN+ F DP + +G ++IG S Y P P VP D +GI
Sbjct: 225 VNYAFVLDPQSRAITGAKIIGTKSCYPPCEPKVPLLADCVFASGI 269
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain
pdb|2VOY|F Chain F, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 113
Score = 34.3 bits (77), Expect = 0.35, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 241 ATVIRNGSVKEIDSAGLVRGDIVLLKIGDKVPADIRLIEIQDLKAENSSLTGEVEPVTCT 300
A VIR+G + + GDIV+++ G+K+P D ++E + + S ++GE PV +
Sbjct: 14 AVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGEPVPVLKS 72
Query: 301 LG 302
G
Sbjct: 73 KG 74
>pdb|2VOY|K Chain K, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 32
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 21/25 (84%)
Query: 812 EGRLIFDNLKKSIAYILASNIPEIL 836
EGR I++N+K+ I Y+++SN+ E++
Sbjct: 1 EGRAIYNNMKQFIRYLISSNVGEVV 25
>pdb|3GVZ|A Chain A, Crystal Structure Of The Protein Cv2077 From
Chromobacterium Violaceum. Northeast Structural Genomics
Consortium Target Cvr62
pdb|3GVZ|B Chain B, Crystal Structure Of The Protein Cv2077 From
Chromobacterium Violaceum. Northeast Structural Genomics
Consortium Target Cvr62
Length = 299
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 120 LEELYSILDTHPDRGLSELEVKRRLEKDGP-NSLPQKYRINNVYVLVGY 167
LE + +LD HP LSE E R DGP NSL +R + L G+
Sbjct: 197 LERIRFLLDQHPAHTLSEFERLSRDRHDGPDNSL---WRSGREHTLAGW 242
>pdb|3NIW|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase From Bacteroides Thetaiotaomicron
Length = 279
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 757 DEIVAVTGDGVNDAPALKKADIGIAMGITGSEVSKQTADMILMDDNFASIVLGIE 811
+E++A+ GDG ND +K A G+A G E K+ AD I + ++ + IE
Sbjct: 214 EEVIAI-GDGYNDLSXIKFAGXGVAXG-NAQEPVKKAADYITLTNDEDGVAEAIE 266
>pdb|3DNP|A Chain A, Crystal Structure Of Stress Response Protein Yhax From
Bacillus Subtilis
Length = 290
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 17/116 (14%)
Query: 688 DHPCTAKAIAIKC-----HILSETSSDDNVFTGTDLRKITDEELKDILE-TNKELVFART 741
D P +A I + H ++ET + F D+ ++ DE+L + + +KE A
Sbjct: 153 DEPVSAPVIEVYTEHDIQHDITETIT--KAFPAVDVIRVNDEKLNIVPKGVSKEAGLA-- 208
Query: 742 SPLQKLRIVELYQSLDEIVAVTGDGVNDAPALKKADIGIAMGITGSEVSKQTADMI 797
L EL S D++VA+ G +D P ++ A +G+A G E+ K+ AD +
Sbjct: 209 -----LVASELGLSXDDVVAI-GHQYDDLPXIELAGLGVAXGNAVPEI-KRKADWV 257
>pdb|1Q7C|A Chain A, The Structure Of Betaketoacyl-[acp] Reductase Y151f Mutant
In Complex With Nadph Fragment
pdb|1Q7C|B Chain B, The Structure Of Betaketoacyl-[acp] Reductase Y151f Mutant
In Complex With Nadph Fragment
Length = 244
Score = 30.4 bits (67), Expect = 4.8, Method: Composition-based stats.
Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 17/115 (14%)
Query: 718 LRKITDEELKDILETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGD------------ 765
L ++ DEE DI+ETN VF + + + + + + + I +V G
Sbjct: 95 LMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGNGGQANFAAA 154
Query: 766 -----GVNDAPALKKADIGIAMGITGSEVSKQTADMILMDDNFASIVLGIEEGRL 815
G + + A + A GI + + + L DD A I+ + GRL
Sbjct: 155 KAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRALSDDQRAGILAQVPAGRL 209
>pdb|1I01|A Chain A, Crystal Structure Of Beta-Ketoacyl [acyl Carrier Protein]
Reductase From E. Coli.
pdb|1I01|B Chain B, Crystal Structure Of Beta-Ketoacyl [acyl Carrier Protein]
Reductase From E. Coli.
pdb|1I01|C Chain C, Crystal Structure Of Beta-Ketoacyl [acyl Carrier Protein]
Reductase From E. Coli.
pdb|1I01|D Chain D, Crystal Structure Of Beta-Ketoacyl [acyl Carrier Protein]
Reductase From E. Coli.
pdb|1I01|E Chain E, Crystal Structure Of Beta-Ketoacyl [acyl Carrier Protein]
Reductase From E. Coli.
pdb|1I01|F Chain F, Crystal Structure Of Beta-Ketoacyl [acyl Carrier Protein]
Reductase From E. Coli.
pdb|1I01|G Chain G, Crystal Structure Of Beta-Ketoacyl [acyl Carrier Protein]
Reductase From E. Coli.
pdb|1I01|H Chain H, Crystal Structure Of Beta-Ketoacyl [acyl Carrier Protein]
Reductase From E. Coli.
pdb|1Q7B|A Chain A, The Structure Of Betaketoacyl-[acp] Reductase From E. Coli
In Complex With Nadp+
pdb|1Q7B|B Chain B, The Structure Of Betaketoacyl-[acp] Reductase From E. Coli
In Complex With Nadp+
pdb|1Q7B|C Chain C, The Structure Of Betaketoacyl-[acp] Reductase From E. Coli
In Complex With Nadp+
pdb|1Q7B|D Chain D, The Structure Of Betaketoacyl-[acp] Reductase From E. Coli
In Complex With Nadp+
Length = 244
Score = 30.4 bits (67), Expect = 4.8, Method: Composition-based stats.
Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 17/115 (14%)
Query: 718 LRKITDEELKDILETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGD------------ 765
L ++ DEE DI+ETN VF + + + + + + + I +V G
Sbjct: 95 LMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGNGGQANYAAA 154
Query: 766 -----GVNDAPALKKADIGIAMGITGSEVSKQTADMILMDDNFASIVLGIEEGRL 815
G + + A + A GI + + + L DD A I+ + GRL
Sbjct: 155 KAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRALSDDQRAGILAQVPAGRL 209
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,767,629
Number of Sequences: 62578
Number of extensions: 1120051
Number of successful extensions: 2677
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2542
Number of HSP's gapped (non-prelim): 76
length of query: 961
length of database: 14,973,337
effective HSP length: 108
effective length of query: 853
effective length of database: 8,214,913
effective search space: 7007320789
effective search space used: 7007320789
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)