RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6866
(961 letters)
>gnl|CDD|130176 TIGR01106, ATPase-IIC_X-K, sodium or proton efflux -- potassium
uptake antiporter, P-type ATPase, alpha subunit. This
model describes the P-type ATPases responsible for the
exchange of either protons or sodium ions for potassium
ions across the plasma membranes of eukaryotes. Unlike
most other P-type ATPases, members of this subfamily
require a beta subunit for activity. This model
encompasses eukaryotes and consists of two functional
types, a Na/K antiporter found widely distributed in
eukaryotes and a H/K antiporter found only in
vertebrates. The Na+ or H+/K+ antiporter P-type ATPases
have been characterized as Type IIC based on a published
phylogenetic analysis. Sequences from Blastocladiella
emersonii (GP|6636502, GP|6636502 and PIR|T43025), C.
elegans (GP|2315419, GP|6671808 and PIR|T31763) and
Drosophila melanogaster (GP|7291424) score below trusted
cutoff, apparently due to long branch length (excessive
divergence from the last common ancestor) as evidenced
by a phylogenetic tree. Experimental evidence is needed
to determine whether these sequences represent ATPases
with conserved function. Aside from fragments, other
sequences between trusted and noise appear to be
bacterial ATPases of unclear lineage, but most likely
calcium pumps [Energy metabolism, ATP-proton motive
force interconversion].
Length = 997
Score = 1032 bits (2669), Expect = 0.0
Identities = 447/890 (50%), Positives = 600/890 (67%), Gaps = 33/890 (3%)
Query: 95 KEKEMDVAQLRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQ 154
K++++D +LK EV++D+H + L+EL T +GLS L +DGPN+L
Sbjct: 2 KKRDLD-----ELKKEVEMDDHKLSLDELERKYGTDLSKGLSAARAAEILARDGPNALTP 56
Query: 155 KYRINNVYVLVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIV 214
+F GFS LLW GA+L FLAY ++A T EE DNL+LG++L+ I+
Sbjct: 57 PPTTPEWVKFCRQLFGGFSMLLWIGAILCFLAYGIQASTEEEPQNDNLYLGVVLSAVVII 116
Query: 215 TGMFSFYQERKSSHITESFAKMIPTRATVIRNGSVKEIDSAGLVRGDIVLLKIGDKVPAD 274
TG FS+YQE KSS I ESF M+P +A VIR+G I++ +V GD+V +K GD++PAD
Sbjct: 117 TGCFSYYQEAKSSKIMESFKNMVPQQALVIRDGEKMSINAEQVVVGDLVEVKGGDRIPAD 176
Query: 275 IRLIEIQDLKAENSSLTGEVEPVTCTLGATNSFAVESRNLVFFSTNLVSGSGKGVVILTG 334
+R+I Q K +NSSLTGE EP T + T+ +E+RN+ FFSTN V G+ +G+V+ TG
Sbjct: 177 LRIISAQGCKVDNSSLTGESEPQTRSPEFTHENPLETRNIAFFSTNCVEGTARGIVVNTG 236
Query: 335 SNTVMGKIAGLTNRLEKKTTPIEQEVQHFMRLISMWALTLGAICFLLALYIGYNWLNACV 394
TVMG+IA L + LE TPI E++HF+ +I+ A+ LG F+L+L +GY WL A +
Sbjct: 237 DRTVMGRIASLASGLENGKTPIAIEIEHFIHIITGVAVFLGVSFFILSLILGYTWLEAVI 296
Query: 395 YVIGIIVANVPEGLLATLTVSLTLTAKRLASKNCIVRRLQTVETLGSIRTICTDKTGTLT 454
++IGIIVANVPEGLLAT+TV LTLTAKR+A KNC+V+ L+ VETLGS TIC+DKTGTLT
Sbjct: 297 FLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLT 356
Query: 455 QNKMTVLHLSFNREIYHVKNGVDVDIQNFE-TNTTYKTLVRAACLCSKAEFEPNQDNIPM 513
QN+MTV H+ F+ +I+ D +F+ ++ T+ L R A LC++A F+ Q+N+P+
Sbjct: 357 QNRMTVAHMWFDNQIHEADTTEDQSGVSFDKSSATWLALSRIAGLCNRAVFKAGQENVPI 416
Query: 514 RERKASGDATEVGILHFIQPRIKSIQDVRNTFPKVTEVPFNSLNKFHLTVHF---SPLNK 570
+R +GDA+E +L I+ + S+ ++R PKV E+PFNS NK+ L++H +
Sbjct: 417 LKRAVAGDASESALLKCIELCLGSVMEMRERNPKVVEIPFNSTNKYQLSIHENEDPRDPR 476
Query: 571 YFLLMKGAPEVIMERCTTMMAESDKEAFLTAEKKYELEDKIKLFASKGERVLAFADLHLG 630
+ L+MKGAPE I+ERC++++ KE L E K ++ GERVL F L+L
Sbjct: 477 HLLVMKGAPERILERCSSILIHG-KEQPLDEELKEAFQNAYLELGGLGERVLGFCHLYLP 535
Query: 631 QNNFPVNFKFSTDPMNFPSSGFRLIGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHP 690
FP F+F TD +NFP+ +GLIS+ DPPR AVPDA+ C AGI+VIMVTGDHP
Sbjct: 536 DEQFPEGFQFDTDDVNFPTDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHP 595
Query: 691 CTAKAIAIKCHILSETS--------------SDDN-------VFTGTDLRKITDEELKDI 729
TAKAIA I+SE + S N V G+DL+ +T E+L +I
Sbjct: 596 ITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDEI 655
Query: 730 LETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGDGVNDAPALKKADIGIAMGITGSEV 789
L+ + E+VFARTSP QKL IVE Q IVAVTGDGVND+PALKKADIG+AMGI GS+V
Sbjct: 656 LKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDV 715
Query: 790 SKQTADMILMDDNFASIVLGIEEGRLIFDNLKKSIAYILASNIPEILPFLFYIFLGIPLP 849
SKQ ADMIL+DDNFASIV G+EEGRLIFDNLKKSIAY L SNIPEI PFL +I IPLP
Sbjct: 716 SKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLP 775
Query: 850 VSTVTVLCIDLGTDMWPAVSLAYEKPESNIMSREPRNPRTDHLVGRKLVTYAYFHLGILE 909
+ T+T+LCIDLGTDM PA+SLAYEK ES+IM R+PRNP+TD LV +L++ AY +G+++
Sbjct: 776 LGTITILCIDLGTDMVPAISLAYEKAESDIMKRQPRNPKTDKLVNERLISMAYGQIGMIQ 835
Query: 910 TLAGFLTYFHVMYDAGWDPMDLLNIRKSWE--SNNNLEDSYHKMWTRTER 957
L GF TYF ++ + G+ P+ L+ +R W+ N+LEDSY + WT +R
Sbjct: 836 ALGGFFTYFVILAENGFLPLHLVGLRVQWDDRWINDLEDSYGQEWTYEQR 885
>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 917
Score = 663 bits (1713), Expect = 0.0
Identities = 309/832 (37%), Positives = 456/832 (54%), Gaps = 45/832 (5%)
Query: 118 IPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYVLVGYIFRGFSALLW 177
+ EL L T P GLSE EVKRRL+K GPN LP++ + + + + F LL
Sbjct: 28 VERNELLLELFTSPTTGLSEEEVKRRLKKYGPNELPEEKKRSLLKKFLRQFKDPFIILLL 87
Query: 178 FGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGMFSFYQERKSSHITESFAKMI 237
ALLS + I+L + ++ + F QE ++ E+ KM
Sbjct: 88 VAALLSAFVGDWV-------DAGVDAIVILLVV--VINALLGFVQEYRAEKALEALKKMS 138
Query: 238 PTRATVIRNGSVKEIDSAGLVRGDIVLLKIGDKVPADIRLIEIQDLKAENSSLTGEVEPV 297
+A V+R+G EI ++ LV GDIVLL+ GD VPAD+RL+E DL+ + S+LTGE PV
Sbjct: 139 SPKAKVLRDGKFVEIPASELVPGDIVLLEAGDVVPADLRLLESSDLEVDESALTGESLPV 198
Query: 298 T----CTLGATNSFAVESRNLVFFSTNLVSGSGKGVVILTGSNTVMGKIAGLTNRLEKKT 353
+ ++ N++F T +VSG KG+V+ TG T GKIA L ++
Sbjct: 199 EKQALPLTKSDAPLGLDRDNMLFSGTTVVSGRAKGIVVATGFETEFGKIARLLPTKKEVK 258
Query: 354 TPIEQEVQHFMRLISMWALTLGAICFLLALYIGYN-WLNACVYVIGIIVANVPEGLLATL 412
TP+++++ + + + AL LGA+ F++ L+ G N L + + + + VA VPEGL A +
Sbjct: 259 TPLQRKLNKLGKFLLVLALVLGALVFVVGLFRGGNGLLESFLTALALAVAAVPEGLPAVV 318
Query: 413 TVSLTLTAKRLASKNCIVRRLQTVETLGSIRTICTDKTGTLTQNKMTVLHLSFNREIYHV 472
T++L L A+R+A N IVR L +ETLGS+ IC+DKTGTLTQNKMTV ++IY
Sbjct: 319 TIALALGAQRMAKDNAIVRSLNAIETLGSVDVICSDKTGTLTQNKMTV------KKIYIN 372
Query: 473 KNGVDVDIQNFETNTTYKTLVRAACLCSKAEFEPNQDNIPMRERKASGDATEVGILHFIQ 532
G D+D ++ + + + AA LC+ P ++ +GD TE ++ F +
Sbjct: 373 GGGKDIDDKDLKDSPALLRFLLAAALCN--SVTPEKNGW-----YQAGDPTEGALVEFAE 425
Query: 533 --PRIKSIQDVRNTFPKVTEVPFNSLNKFHLTVHFSPLNKYFLLMKGAPEVIMERCTTMM 590
+ + +P + E+PF+S K + + KY L +KGAPEVI+ERC ++
Sbjct: 426 KLGFSLDLSGLEVEYPILAEIPFDSERKRMSVIVKTDEGKYILFVKGAPEVILERCKSIG 485
Query: 591 AESDKEAFLTAEKKYELEDKIKLFASKGERVLAFADLHLGQNNFPVNFKFSTDPMNFPSS 650
LT E LE+ +K AS+G RVLA A K S
Sbjct: 486 ELEP----LTEEGLRTLEEAVKELASEGLRVLAVA-----YKKLDRAEKDDEVDE--IES 534
Query: 651 GFRLIGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHILSETSSDD 710
+GL + DPPR V +AI+ +AGI+V M+TGDH TA AIA +C I +E S
Sbjct: 535 DLVFLGLTGIEDPPREDVKEAIEELREAGIKVWMITGDHVETAIAIAKECGIEAEAESA- 593
Query: 711 NVFTGTDLRKITDEELKDILETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGDGVNDA 770
V G +L ++DEEL +++E VFAR SP QK RIVE Q +VA+TGDGVNDA
Sbjct: 594 LVIDGAELDALSDEELAELVEELS--VFARVSPEQKARIVEALQKSGHVVAMTGDGVNDA 651
Query: 771 PALKKADIGIAMGITGSEVSKQTADMILMDDNFASIVLGIEEGRLIFDNLKKSIAYILAS 830
PALK AD+GIAMG G++ +K+ AD++L+DDNFA+IVL + EGR ++ N+KK I Y+L+
Sbjct: 652 PALKAADVGIAMGGEGTDAAKEAADIVLLDDNFATIVLAVVEGRRVYVNIKKFILYLLSK 711
Query: 831 NIPEILPFLFYIFLGIP-LPVSTVTVLCIDLGTDMWPAVSLAYEKPESNIMSREPRNPRT 889
N+ E+L L Y + LP++ + +L I+L TD PA++L E PES++M R PR P
Sbjct: 712 NVGEVLTLLIYSLFNLFFLPLTPLQLLWINLLTDSLPALALGVEDPESDVMKRPPRGPEE 771
Query: 890 DHLVGRKLVTYAYFHLGILETLAGFLTYFHVMYDAGWDPMDLLNIRKSWESN 941
L RK+ +G+L + LT+ + + + L + ++
Sbjct: 772 -GLFNRKIFWRFILIIGLLSAILFILTFLLYLLGFIANTLGLDLFQALLQTT 822
>gnl|CDD|233277 TIGR01116, ATPase-IIA1_Ca, sarco/endoplasmic reticulum
calcium-translocating P-type ATPase. This model
describes the P-type ATPase responsible for
translocating calcium ions across the endoplasmic
reticulum membrane of eukaryotes , and is of particular
importance in the sarcoplasmic reticulum of skeletal and
cardiac muscle in vertebrates. These pumps transfer Ca2+
from the cytoplasm to the lumen of the endoplasmic
reticulum. In humans and mice, at least, there are
multiple isoforms of the SERCA pump with overlapping but
not redundant functions. Defects in SERCA isoforms are
associated with diseases in humans. The calcium P-type
ATPases have been characterized as Type IIA based on a
phylogenetic analysis which distinguishes this group
from the Type IIB PMCA calcium pump modelled by
TIGR01517. A separate analysis divides Type IIA into
sub-types, SERCA and PMR1 the latter of which is
modelled by TIGR01522 [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 917
Score = 446 bits (1150), Expect = e-142
Identities = 270/813 (33%), Positives = 407/813 (50%), Gaps = 83/813 (10%)
Query: 175 LLWFGALLSF-LAYLLEAETNEEKPQDNLWLGIILALTCIVTGMFSFYQERKSSHITESF 233
+L A +SF LA+ E E + + +IL IV +QER + E+
Sbjct: 12 ILLLAACVSFVLAWFEEGEETVTAFVEPFVILLILVANAIV----GVWQERNAEKAIEAL 67
Query: 234 AKMIPTRATVIRNGSVKEIDSAGLVRGDIVLLKIGDKVPADIRLIEIQDLKAENSSLTGE 293
+ A V+R+G I + LV GDIV L +GDKVPADIR++ ++ L+ + S LTGE
Sbjct: 68 KEYESEHAKVLRDGRWSVIKAKDLVPGDIVELAVGDKVPADIRVLSLKTLRVDQSILTGE 127
Query: 294 VEPVTCTLGATNSFAVE------SRNLVFFSTNLVSGSGKGVVILTGSNTVMGKIAGLTN 347
V T S E +N++F T +V+G +GVV+ TG +T +GKI
Sbjct: 128 SVSVNKH---TESVPDERAVNQDKKNMLFSGTLVVAGKARGVVVRTGMSTEIGKIRDEMR 184
Query: 348 RLEKKTTPIEQEVQHFMRLISMWALTLGAICFLLAL------YIGYNWLNACVY----VI 397
E++ TP+++++ F L+S + + +++ + +G W+ +Y +
Sbjct: 185 AAEQEDTPLQKKLDEFGELLSKVIGLICILVWVINIGHFNDPALGGGWIQGAIYYFKIAV 244
Query: 398 GIIVANVPEGLLATLTVSLTLTAKRLASKNCIVRRLQTVETLGSIRTICTDKTGTLTQNK 457
+ VA +PEGL A +T L L +++A KN IVR+L +VETLG IC+DKTGTLT N+
Sbjct: 245 ALAVAAIPEGLPAVITTCLALGTRKMAKKNAIVRKLPSVETLGCTTVICSDKTGTLTTNQ 304
Query: 458 MTVLHL-----------SFNRE--IYHVKNGVDVDIQNFETNTTYKTLVRAACLCSKAEF 504
M+V + F Y + GV + L A + +
Sbjct: 305 MSVCKVVALDPSSSSLNEFCVTGTTYAPEGGV-IKDDGPVAGGQDAGLEELATIAALC-- 361
Query: 505 EPNQDNIPMRERKA----SGDATEVGILHFIQ------------PRIKSIQD----VRNT 544
N ++ ERK G+ATE + ++ + + +
Sbjct: 362 --NDSSLDFNERKGVYEKVGEATEAALKVLVEKMGLPATKNGVSSKRRPALGCNSVWNDK 419
Query: 545 FPKVTEVPFNSLNKFHLTVHFSPLNKYFLLMKGAPEVIMERCTTMMAESDKEAFLTAEKK 604
F K+ + F+ K ++V P L +KGAPE ++ERCT ++ + LT + K
Sbjct: 420 FKKLATLEFSRDRK-SMSVLCKPSTGNKLFVKGAPEGVLERCTHILNGDGRAVPLTDKMK 478
Query: 605 YELEDKIKLFAS-KGERVLAFADLHLGQNNFPVNFKFSTDPMNFPS--SGFRLIGLISLY 661
+ IK + K R LA A + P +DP NF + S IG++ +
Sbjct: 479 NTILSVIKEMGTTKALRCLALAFKDIPD---PREEDLLSDPANFEAIESDLTFIGVVGML 535
Query: 662 DPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHILSE-TSSDDNVFTGTDLRK 720
DPPRP V DAI+ C AGIRVIM+TGD+ TA+AI + I S FTG + +
Sbjct: 536 DPPRPEVADAIEKCRTAGIRVIMITGDNKETAEAICRRIGIFSPDEDVTFKSFTGREFDE 595
Query: 721 ITDEELKDILETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGDGVNDAPALKKADIGI 780
+ + + ++F+R P K +VEL Q EIVA+TGDGVNDAPALKKADIGI
Sbjct: 596 MGPAKQRAA--CRSAVLFSRVEPSHKSELVELLQEQGEIVAMTGDGVNDAPALKKADIGI 653
Query: 781 AMGITGSEVSKQTADMILMDDNFASIVLGIEEGRLIFDNLKKSIAYILASNIPEILPFLF 840
AMG +G+EV+K+ +DM+L DDNFA+IV +EEGR I++N+K+ I Y+++SNI E++
Sbjct: 654 AMG-SGTEVAKEASDMVLADDNFATIVAAVEEGRAIYNNMKQFIRYMISSNIGEVVCIFL 712
Query: 841 YIFLGIPLPVSTVTVLCIDLGTDMWPAVSLAYEKPESNIMSREPRNPR----TDHLVGRK 896
LGIP + V +L ++L TD PA +L + P+ +IM + PR P T L R
Sbjct: 713 TAALGIPEGLIPVQLLWVNLVTDGLPATALGFNPPDKDIMWKPPRRPDEPLITGWLFFRY 772
Query: 897 LVTYAYFHLGILETLAGFLTYF---HVMYDAGW 926
LV Y L T+ GF+ ++ H
Sbjct: 773 LVVGVYV---GLATVGGFVWWYLLTHFTGCDED 802
>gnl|CDD|130585 TIGR01522, ATPase-IIA2_Ca, golgi membrane calcium-translocating
P-type ATPase. This model describes the P-type ATPase
responsible for translocating calcium ions across the
golgi membrane of fungi and animals , and is of
particular importance in the sarcoplasmic reticulum of
skeletal and cardiac muscle in vertebrates. The calcium
P-type ATPases have been characterized as Type IIA based
on a phylogenetic analysis which distinguishes this
group from the Type IIB PMCA calcium pump modelled by
TIGR01517. A separate analysis divides Type IIA into
sub-types, SERCA and PMR1 the former of which is
modelled by TIGR01116.
Length = 884
Score = 443 bits (1141), Expect = e-141
Identities = 266/805 (33%), Positives = 415/805 (51%), Gaps = 78/805 (9%)
Query: 118 IPLEELYSILDTHPDRGLSEL-EVKRRLEKDGPNSLPQKYRINNVYVLVGYIFRGFSA-- 174
+ +EE S L T GL+ E R G N + + L F
Sbjct: 7 LSVEETCSKLQTDLQNGLNSSQEASHRRAFHGWNEFDVEEDES----LWKKFLSQFVKNP 62
Query: 175 --LLWFG-ALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGMFSFYQERKSSHITE 231
LL A++S ++ + I LA+ +VT F QE +S E
Sbjct: 63 LILLLIASAVISVFMGNIDDA-----------VSITLAILIVVT--VGFVQEYRSEKSLE 109
Query: 232 SFAKMIPTRATVIRNGSVKEIDSAGLVRGDIVLLKIGDKVPADIRLIEIQDLKAENSSLT 291
+ K++P +IR G ++ + ++ LV GD+V L +GD+VPAD+R++E DL + S+LT
Sbjct: 110 ALNKLVPPECHLIREGKLEHVLASTLVPGDLVCLSVGDRVPADLRIVEAVDLSIDESNLT 169
Query: 292 GEVEPVTCTL----GATNSFAVESRNLVFFSTNLVSGSGKGVVILTGSNTVMGKIAGLTN 347
GE PV+ ATN E N+ F T + G GKG+V+ TGSNT G + +
Sbjct: 170 GETTPVSKVTAPIPAATNGDLAERSNIAFMGTLVRCGHGKGIVVGTGSNTEFGAVFKMMQ 229
Query: 348 RLEKKTTPIEQEVQHFMRLISMWALTLGAICFLLALYIGYNWLNACVYVIGIIVANVPEG 407
+EK TP+++ + + +S+ + + + L+ + G +WL + + VA +PEG
Sbjct: 230 AIEKPKTPLQKSMDLLGKQLSLVSFGVIGVICLVGWFQGKDWLEMFTISVSLAVAAIPEG 289
Query: 408 LLATLTVSLTLTAKRLASKNCIVRRLQTVETLGSIRTICTDKTGTLTQNKMTVLHL---- 463
L +TV+L L R++ K IVR+L +VETLGS+ IC+DKTGTLT+N MTV +
Sbjct: 290 LPIIVTVTLALGVLRMSKKRAIVRKLPSVETLGSVNVICSDKTGTLTKNHMTVTKIWTSD 349
Query: 464 ---------SFNREIYHVKNGVDVDIQNFETNTTYKTLVRAACLCSKAEFEPNQDNIPMR 514
S N + V DV + F T + L A LC+ A+F D +
Sbjct: 350 GLHTMLNAVSLN-QFGEVIVDGDV-LHGFYTVAVSRIL-EAGNLCNNAKFRNEADTL--- 403
Query: 515 ERKASGDATEVGILHFIQPRIKSIQDVRNTFPKVTEVPFNSLNKFHLTVHFSPLN-KYFL 573
G+ T+V ++ + D+R T+ +V EVPF+S K+ +
Sbjct: 404 ----LGNPTDVALIE--LLMKFGLDDLRETYIRVAEVPFSSERKWMAVKCVHRQDRSEMC 457
Query: 574 LMKGAPEVIMERCTTMMAESDKEAFLTAEKKYELEDKIKLFASKGERVLAFADLHLGQNN 633
MKGA E +++ CT + K LT +++ ++++ AS G RV+AFA G
Sbjct: 458 FMKGAYEQVLKYCTYYQKKDGKTLTLTQQQRDVIQEEAAEMASAGLRVIAFAS---GPEK 514
Query: 634 FPVNFKFSTDPMNFPSSGFRLIGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTA 693
+ F +GL+ + DPPRP V +A+ G+R+IM+TGD TA
Sbjct: 515 GQLTF----------------LGLVGINDPPRPGVKEAVTTLITGGVRIIMITGDSQETA 558
Query: 694 KAIAIKCHILSETSSDDNVFTGTDLRKITDEELKDILETNKELVFARTSPLQKLRIVELY 753
+IA + + S+TS +G L + D++L I+ K VFAR SP K++IV+
Sbjct: 559 VSIARRLGMPSKTSQSV---SGEKLDAMDDQQLSQIVP--KVAVFARASPEHKMKIVKAL 613
Query: 754 QSLDEIVAVTGDGVNDAPALKKADIGIAMGITGSEVSKQTADMILMDDNFASIVLGIEEG 813
Q ++VA+TGDGVNDAPALK ADIG+AMG TG++V+K+ ADMIL DD+FA+I+ IEEG
Sbjct: 614 QKRGDVVAMTGDGVNDAPALKLADIGVAMGQTGTDVAKEAADMILTDDDFATILSAIEEG 673
Query: 814 RLIFDNLKKSIAYILASNIPEILPFLFYIFLGIPLPVSTVTVLCIDLGTDMWPAVSLAYE 873
+ IF+N+K I + L++++ + +G P P++ + +L I++ D PA SL E
Sbjct: 674 KGIFNNIKNFITFQLSTSVAALSLIALATLMGFPNPLNAMQILWINILMDGPPAQSLGVE 733
Query: 874 KPESNIMSREPRNPRTDHLVGRKLV 898
+ ++M + PR PR D ++ + L+
Sbjct: 734 PVDKDVMRKPPR-PRNDKILTKDLI 757
>gnl|CDD|188151 TIGR01517, ATPase-IIB_Ca, plasma-membrane calcium-translocating
P-type ATPase. This model describes the P-type ATPase
responsible for translocating calcium ions across the
plasma membrane of eukaryotes , out of the cell. In some
organisms, this type of pump may also be found in
vacuolar membranes. In humans and mice, at least, there
are multiple isoforms of the PMCA pump with overlapping
but not redundant functions. Accordingly, there are no
human diseases linked to PMCA defects, although
alterations of PMCA function do elicit physiological
effects. The calcium P-type ATPases have been
characterized as Type IIB based on a phylogenetic
analysis which distinguishes this group from the Type
IIA SERCA calcium pump. A separate analysis divides Type
IIA into sub-types (SERCA and PMR1) which are modelled
by TIGR01116 and TIGR01522. This model is well separated
from those.
Length = 944
Score = 401 bits (1032), Expect = e-124
Identities = 247/850 (29%), Positives = 398/850 (46%), Gaps = 88/850 (10%)
Query: 88 SILRFIHKEKEMDVAQLRDLKNEV----DIDEHLIPLEELYSILDTHPDRGLSEL--EVK 141
SI ++ V+ L DL + + E L E + + L T + G+ ++
Sbjct: 9 SIRDNFTDGFDVGVSILTDLTDIFKRAMPLYEKLGGAEGIATKLKTDLNEGVRLSSSTLE 68
Query: 142 RRLEKDGPNSLPQKYRINNVYVLVGYIFRGFSALLW------------FGALLSFLAYLL 189
RR + G N LP+K + F ++W A++S + L
Sbjct: 69 RREKVYGKNELPEK------------PPKSFLQIVWAALSDQTLILLSVAAVVSLVLGLP 116
Query: 190 E-AETNEEKPQDNLWL---GIILALTCIVTGMFSFYQERKSSHITESFAKMIPTRATVIR 245
E E + W+ I++++ V + + +K + + + VIR
Sbjct: 117 EPGEGKADTETG--WIEGVAILVSVIL-VVLVTAVNDYKKELQFRQLNREKSAQKIAVIR 173
Query: 246 NGSVKEIDSAGLVRGDIVLLKIGDKVPADIRLIEIQDLKAENSSLTGEVEPVTCTLGATN 305
G ++I +V GDIV L GD VPAD I L+ + SS+TGE +P+
Sbjct: 174 GGQEQQISIHDIVVGDIVSLSTGDVVPADGVFISGLSLEIDESSITGESDPIKKGP---- 229
Query: 306 SFAVESRNLVFFSTNLVSGSGKGVVILTGSNTVMGKIAGLTNRLEKKTTPIEQEVQHFMR 365
+ T + GSG+ +V G N+ GK+ + + +TP+++++
Sbjct: 230 ----VQDPFLLSGTVVNEGSGRMLVTAVGVNSFGGKLMMELRQAGEDSTPLQEKLSELAG 285
Query: 366 LISMWALTLGAICFLLA--LYI--------------GYNWLNACVYVIGIIVANVPEGLL 409
LI + + + FL+ Y+ +L+ + + I+V VPEGL
Sbjct: 286 LIGKFGMGSAVLLFLVLSLRYVFRIIRGDGRDTEEDAQTFLDHFIIAVTIVVVAVPEGLP 345
Query: 410 ATLTVSLTLTAKRLASKNCIVRRLQTVETLGSIRTICTDKTGTLTQNKMTVLHLSFNREI 469
+T++L + K++ N +VR L ET+GS IC+DKTGTLTQN M+V+ +
Sbjct: 346 LAVTIALAYSMKKMMKDNNLVRHLAACETMGSATAICSDKTGTLTQNVMSVVQGYIGEQR 405
Query: 470 YHVKNGVDVDIQNFETNTTYKTLVRAACLCSKAEFEPNQDNIPMRERKASGDATEVGILH 529
++V+ D+ LV L S +E D +R G TE +L
Sbjct: 406 FNVR-----DVLRNVPKHVRNILVEGISLNSSSE--EVVDR--GGKRAFIGSKTECALLD 456
Query: 530 FIQPRIKSIQDVRNTFPKVTEVPFNSLNKFHLTVHFSPLNKYFLLMKGAPEVIMERCTTM 589
F ++ Q+VR V PFNS KF V KY KGA E++++ C
Sbjct: 457 FGLLLLRDYQEVRAEEKVVKIYPFNSERKFMSVVVKHSGGKYREFRKGASEIVLKPCRKR 516
Query: 590 MAESDKEAFLTAEKKYELEDKIKLFASKGERV--LAFADLHLGQNNFPVNFKFSTDPMNF 647
+ + + ++ + K D I+ AS R LA+ D + ++
Sbjct: 517 LDSNGEATPISDDDKDRCADVIEPLASDALRTICLAYRDFAPEEFPR----------KDY 566
Query: 648 PSSGFRLIGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHILSETS 707
P+ G LIG++ + DP RP V +A+ C +AGI V MVTGD+ TAKAIA C IL+
Sbjct: 567 PNKGLTLIGVVGIKDPLRPGVREAVQECQRAGITVRMVTGDNIDTAKAIARNCGILTFGG 626
Query: 708 SDDNVFTGTDLRKITDEELKDILETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGDGV 767
G + R + EE+ IL K V AR+SPL K +V + + + E+VAVTGDG
Sbjct: 627 L---AMEGKEFRSLVYEEMDPILP--KLRVLARSSPLDKQLLVLMLKDMGEVVAVTGDGT 681
Query: 768 NDAPALKKADIGIAMGITGSEVSKQTADMILMDDNFASIVLGIEEGRLIFDNLKKSIAYI 827
NDAPALK AD+G +MGI+G+EV+K+ +D+IL+DDNFASIV ++ GR ++DN++K + +
Sbjct: 682 NDAPALKLADVGFSMGISGTEVAKEASDIILLDDNFASIVRAVKWGRNVYDNIRKFLQFQ 741
Query: 828 LASNIPEILPFLFYIFLGIPLPVSTVTVLCIDLGTDMWPAVSLAYEKPESNIMSREPRNP 887
L N+ ++ + P++ V +L ++L D A++LA E P ++ R+P
Sbjct: 742 LTVNVVAVILTFVGSCISSTSPLTAVQLLWVNLIMDTLAALALATEPPTEALLDRKP-IG 800
Query: 888 RTDHLVGRKL 897
R L+ R +
Sbjct: 801 RNAPLISRSM 810
>gnl|CDD|233438 TIGR01494, ATPase_P-type, ATPase, P-type (transporting), HAD
superfamily, subfamily IC. The P-type ATPases are a
large family of trans-membrane transporters acting on
charged substances. The distinguishing feature of the
family is the formation of a phosphorylated intermediate
(aspartyl-phosphate) during the course of the reaction.
Another common name for these enzymes is the E1-E2
ATPases based on the two isolable conformations: E1
(unphosphorylated) and E2 (phosphorylated). Generally,
P-type ATPases consist of only a single subunit
encompassing the ATPase and ion translocation pathway,
however, in the case of the potassium (TIGR01497) and
sodium/potassium (TIGR01106) varieties, these functions
are split between two subunits. Additional small
regulatory or stabilizing subunits may also exist in
some forms. P-type ATPases are nearly ubiquitous in life
and are found in numerous copies in higher organisms (at
least 45 in Arabidopsis thaliana, for instance ).
Phylogenetic analyses have revealed that the P-type
ATPase subfamily is divided up into groups based on
substrate specificities and this is represented in the
various subfamily and equivalog models that have been
made: IA (K+) TIGR01497, IB (heavy metals) TIGR01525,
IIA1 (SERCA-type Ca++) TIGR01116, IIA2 (PMR1-type Ca++)
TIGR01522, IIB (PMCA-type Ca++) TIGR01517, IIC (Na+/K+,
H+/K+ antiporters) TIGR01106, IID (fungal-type Na+ and
K+) TIGR01523, IIIA (H+) TIGR01647, IIIB (Mg++)
TIGR01524, IV (phospholipid, flippase) TIGR01652 and V
(unknown specificity) TIGR01657. The crystal structure
of one calcium-pumping ATPase and an analysis of the
fold of the catalytic domain of the P-type ATPases have
been published. These reveal that the catalytic core of
these enzymes is a haloacid dehalogenase(HAD)-type
aspartate-nucleophile hydrolase. The location of the
ATP-binding loop in between the first and second HAD
conserved catalytic motifs defines these enzymes as
members of subfamily I of the HAD superfamily (see also
TIGR01493, TIGR01509, TIGR01549, TIGR01544 and
TIGR01545). Based on these classifications, the P-type
ATPase _superfamily_ corresponds to the IC subfamily of
the HAD superfamily.
Length = 543
Score = 383 bits (986), Expect = e-122
Identities = 204/649 (31%), Positives = 292/649 (44%), Gaps = 119/649 (18%)
Query: 207 ILALTCIVTGMFSFYQERKSSHITESFAKMI--PTRATVIRNGSVKEIDSAGLVRGDIVL 264
+ +V + Q+ K+ I S + + ATV+RNG KEI + LV GD+VL
Sbjct: 1 FILFLVLVFVLLVVKQKLKAEDILRSLSDRLVNTRPATVLRNG-WKEIPAKDLVPGDVVL 59
Query: 265 LKIGDKVPADIRLIEIQDLKAENSSLTGEVEPVTCTLGATNSFAVESRNLVFFSTNLVSG 324
+K G+ VPAD L+ + S+LTGE PV T + +LVF T + G
Sbjct: 60 VKSGETVPADGVLLS-GSCFVDESNLTGESNPVLKTALKETQSGTITGDLVFAGTYVFGG 118
Query: 325 SGKGVVILTGSNTVMGKIAGLTNRLEKKTTPIEQEVQHFMRLISMWALTLGAICFLLALY 384
+ VV TG T +G+IA + + TP++ + I + L L A+ L L+
Sbjct: 119 TLIVVVTPTGILTTVGRIAVVVKTGFETRTPLQSKRDRLENFIFILFLLLLALAVFLYLF 178
Query: 385 IGYNWLNACVYVI----GIIVANVPEGLLATLTVSLTLTAKRLASKNCIVRRLQTVETLG 440
I N+ + ++V VP L A +TV+L + RLA K +VR L +E LG
Sbjct: 179 IRGWDPNSIFKALLRALIVLVIVVPPALPAAVTVALAVGDARLAKKGILVRNLNALEELG 238
Query: 441 SIRTICTDKTGTLTQNKMTVLHLSFNREIYHVKNGVDVDIQNFETNTTYKTLVRAACLCS 500
+ +C+DKTGTLT+NKMT+ + + + V N
Sbjct: 239 KVDYLCSDKTGTLTKNKMTLQGVYIDG-GKEDNSSSLVACDN------------------ 279
Query: 501 KAEFEPNQDNIPMRERKASGDATEVGILHFIQPRIKSIQDVRNTFPKVTEVPFNSLNKFH 560
SGD E +L + K+ + + PF+S+ K
Sbjct: 280 ---------------NYLSGDPMEKALLKSAELVGKA-DKGNKEYKILDVFPFSSVLKRM 323
Query: 561 LTVHFSPLNKYFLLMKGAPEVIMERCTTMMAESDKEAFLTAEKKYELEDKIKLFASKGER 620
+ +P L +KGAPE I+ERC E+K A +G R
Sbjct: 324 SVIVETPDGSDLLFVKGAPEFILERCN------------------NYEEKYLELARQGLR 365
Query: 621 VLAFADLHLGQNNFPVNFKFSTDPMNFPSSGFRLIGLISLYDPPRPAVPDAIDACHKAGI 680
VLAFA L + +GLI+ DP RP + I+ AGI
Sbjct: 366 VLAFASKELEDD-------------------LEFLGLITFEDPLRPDAKETIEELKAAGI 406
Query: 681 RVIMVTGDHPCTAKAIAIKCHILSETSSDDNVFTGTDLRKITDEELKDILETNKELVFAR 740
+V+M+TGD+ TAKAIA + I VFAR
Sbjct: 407 KVVMITGDNVLTAKAIAKELGI---------------------------------DVFAR 433
Query: 741 TSPLQKLRIVELYQSLDEIVAVTGDGVNDAPALKKADIGIAMGITGSEVSKQTADMILMD 800
SP QKL+IVE Q IVA+TGDGVNDAPALKKAD+GIAMG +K AD++L+D
Sbjct: 434 VSPEQKLQIVEALQKKGHIVAMTGDGVNDAPALKKADVGIAMG------AKAAADIVLLD 487
Query: 801 DNFASIVLGIEEGRLIFDNLKKSIAYILASNIPEILPFLFYIFLGIPLP 849
D+ ++IV ++EGR IF N+K +I + +A N+ I L I + + LP
Sbjct: 488 DDLSAIVKAVKEGRKIFSNIKSNIFWAIAYNLILIPLALLLIVIILLLP 536
>gnl|CDD|130586 TIGR01523, ATPase-IID_K-Na, potassium and/or sodium efflux P-type
ATPase, fungal-type. Initially described as a calcium
efflux ATPase , more recent work has shown that the S.
pombe CTA3 gene is in fact a potassium ion efflux pump.
This model describes the clade of fungal P-type ATPases
responsible for potassium and sodium efflux. The degree
to which these pumps show preference for sodium or
potassium varies. This group of ATPases has been
classified by phylogentic analysis as type IID. The
Leishmania sequence (GP|3192903), which falls between
trusted and noise in this model, may very well turn out
to be an active potassium pump.
Length = 1053
Score = 367 bits (944), Expect = e-111
Identities = 265/931 (28%), Positives = 417/931 (44%), Gaps = 153/931 (16%)
Query: 121 EELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYVLVGYIFRGFSALLWFGA 180
+E + T GL+ E + RL++ G N L I+ +L+ + +L A
Sbjct: 13 DEAAEFIGTSIPEGLTHDEAQHRLKEVGENRLEADSGIDAKAMLLHQVCNAMCMVLIIAA 72
Query: 181 LLSFLAYLLEAETNEEKPQDNLWL-GIILALTCIVTGMFSFYQERKSSHITESFAKMIPT 239
+SF A + W+ G +++ + + F QE K+ +S +
Sbjct: 73 AISF------AMHD--------WIEGGVISAIIALNILIGFIQEYKAEKTMDSLKNLASP 118
Query: 240 RATVIRNGSVKEIDSAGLVRGDIVLLKIGDKVPADIRLIEIQDLKAENSSLTGEVEPVT- 298
A VIRNG IDS LV GDI LLK GD +PAD+RLIE ++ + + LTGE PV
Sbjct: 119 MAHVIRNGKSDAIDSHDLVPGDICLLKTGDTIPADLRLIETKNFDTDEALLTGESLPVIK 178
Query: 299 ---CTLGATNSFAVESR-NLVFFSTNLVSGSGKGVVILTGSNTVMGKIA-------GLTN 347
T G + R NL F S+ + G KG+ I T N+ +G IA GL
Sbjct: 179 DAHATFGKEEDTPIGDRINLAFSSSAVTKGRAKGICIATALNSEIGAIAAGLQGDGGLFQ 238
Query: 348 RLEKK------------TTPIEQEVQHFM---------RLISMWALTLGAICFLLALYI- 385
R EK ++ F+ R +S A+ L I + A+ +
Sbjct: 239 RPEKDDPNKRRKLNKWILKVTKKVTGAFLGLNVGTPLHRKLSKLAVILFCIAIIFAIIVM 298
Query: 386 ---GYNWLN-ACVYVIGIIVANVPEGLLATLTVSLTLTAKRLASKNCIVRRLQTVETLGS 441
++ +Y I + ++ +PE L+A L++++ + A ++ +N IVR+L +E LG+
Sbjct: 299 AAHKFDVDKEVAIYAICLAISIIPESLIAVLSITMAMGAANMSKRNVIVRKLDALEALGA 358
Query: 442 IRTICTDKTGTLTQNKMTVLHL----------------------------SFNREIYHVK 473
+ IC+DKTGT+TQ KM + F+ Y
Sbjct: 359 VNDICSDKTGTITQGKMIARQIWIPRFGTISIDNSDDAFNPNEGNVSGIPRFSPYEYSHN 418
Query: 474 NGVDVDI-QNFETNT------------TYKTLVRAACLCSKAEFEPNQDNIPMRERKASG 520
D DI + F+ + L+ A L + A + KA G
Sbjct: 419 EAADQDILKEFKDELKEIDLPEDIDMDLFIKLLETAALANIATVFKDDAT---DCWKAHG 475
Query: 521 DATEVGI------LHFIQPRIKSIQDVRNT-------------------FPKVTEVPFNS 555
D TE+ I + +D+ + F + E PF+S
Sbjct: 476 DPTEIAIHVFAKKFDLPHNALTGEEDLLKSNENDQSSLSQHNEKPGSAQFEFIAEFPFDS 535
Query: 556 LNKFHLTVHFSPLNK-YFLLMKGAPEVIMERCTTMMAESD-KEAFLTAEKKYELEDKIKL 613
K +++ + Y + KGA E I+E C++ + K + L + + ++
Sbjct: 536 EIKRMASIYEDNHGETYNIYAKGAFERIIECCSSSNGKDGVKISPLEDCDRELIIANMES 595
Query: 614 FASKGERVLAFADLHLGQ-NNFPVNFKFSTDPMNFPSSGFRLIGLISLYDPPRPAVPDAI 672
A++G RVLAFA + +N K T S +GLI +YDPPR A+
Sbjct: 596 LAAEGLRVLAFASKSFDKADNNDDQLKNETLNRATAESDLEFLGLIGIYDPPRNESAGAV 655
Query: 673 DACHKAGIRVIMVTGDHPCTAKAIAIKCHIL-------SETSSDDNVFTGTDLRKITDEE 725
+ CH+AGI V M+TGD P TAKAIA + I+ + D V TG+ ++DEE
Sbjct: 656 EKCHQAGINVHMLTGDFPETAKAIAQEVGIIPPNFIHDRDEIMDSMVMTGSQFDALSDEE 715
Query: 726 LKDILETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGDGVNDAPALKKADIGIAMGIT 785
+ D+ LV AR +P K++++E A+TGDGVND+P+LK A++GIAMGI
Sbjct: 716 VDDLKAL--CLVIARCAPQTKVKMIEALHRRKAFCAMTGDGVNDSPSLKMANVGIAMGIN 773
Query: 786 GSEVSKQTADMILMDDNFASIVLGIEEGRLIFDNLKKSIAYILASNIPEILPFLFYIFLG 845
GS+V+K +D++L DDNFASI+ IEEGR +FDN+ K + ++LA N+ E + + +G
Sbjct: 774 GSDVAKDASDIVLSDDNFASILNAIEEGRRMFDNIMKFVLHLLAENVAEAI----LLIIG 829
Query: 846 IP---------LPVSTVTVLCIDLGTDMWPAVSLAYEKPESNIMSREPRNPRTDHLVG-- 894
+ P+S V +L + T +PA+ L EK ++M R P D+ VG
Sbjct: 830 LAFRDENGKSVFPLSPVEILWCIMITSCFPAMGLGLEKAAPDLMDRLPH----DNEVGIF 885
Query: 895 RKLVTYAYFHLGILETLAGFLTYFHVMYDAG 925
+K + F G + ++ ++Y G
Sbjct: 886 QKELIIDMFAYGFFLGGSCLASFTGILYGFG 916
>gnl|CDD|233506 TIGR01647, ATPase-IIIA_H, plasma-membrane proton-efflux P-type
ATPase. This model describes the plasma membrane proton
efflux P-type ATPase found in plants, fungi, protozoa,
slime molds and archaea. The best studied representative
is from yeast.
Length = 754
Score = 340 bits (873), Expect = e-103
Identities = 227/803 (28%), Positives = 366/803 (45%), Gaps = 124/803 (15%)
Query: 134 GLSELEVKRRLEKDGPNSLPQKYRINNVYVLVGYIFRGFSALLWFGALLSFLAYLLEAET 193
GL+ E K+RL K GPN LP+K + + +G+ + S ++ A+++ L
Sbjct: 1 GLTSAEAKKRLAKYGPNELPEKKV-SPLLKFLGFFWNPLSWVMEAAAIIA--IALEN--- 54
Query: 194 NEEKPQDNLW--LGIILALTCIVTGMFSFYQERKSSHITESFAKMIPTRATVIRNGSVKE 251
W IIL L + F +E K+ + E+ + + +A V+R+G +E
Sbjct: 55 ---------WVDFVIILGLLLL-NATIGFIEENKAGNAVEALKQSLAPKARVLRDGKWQE 104
Query: 252 IDSAGLVRGDIVLLKIGDKVPADIRLIEIQDLKAENSSLTGEVEPVTCTLGATNSFAVES 311
I ++ LV GD+V LKIGD VPAD RL E ++ + ++LTGE PVT G
Sbjct: 105 IPASELVPGDVVRLKIGDIVPADCRLFEGDYIQVDQAALTGESLPVTKKTG--------- 155
Query: 312 RNLVFFSTNLVSGSGKGVVILTGSNTVMGKIAGLTNRLEKKTTPIEQEVQHFMRLISMWA 371
++ + + + G + VV TG NT GK A L E + +++ + + +
Sbjct: 156 -DIAYSGSTVKQGEAEAVVTATGMNTFFGKAAALVQSTETGSGHLQKILSKIGLFLIVLI 214
Query: 372 LTLGAICFLLALYI-GYNWLNACVYVIGIIVANVPEGLLATLTVSLTLTAKRLASKNCIV 430
L I ++ + G ++ + + ++V +P + A L+V++ + A LA K IV
Sbjct: 215 GVLVLIELVVLFFGRGESFREGLQFALVLLVGGIPIAMPAVLSVTMAVGAAELAKKKAIV 274
Query: 431 RRLQTVETLGSIRTICTDKTGTLTQNKMTVLHLSFNREIYHVKNGVDVDIQNFETNTTYK 490
RL +E L + +C+DKTGTLT NK+++ EI NG D D
Sbjct: 275 TRLTAIEELAGMDILCSDKTGTLTLNKLSI------DEILPFFNGFDKD----------- 317
Query: 491 TLVRAACLCSKAEFEPNQDNIPMRERKASGDATEVGILHFIQPRIKSIQDVRNTFPKVTE 550
++ A L S+ E +QD I D +G K +++ R+ + +
Sbjct: 318 DVLLYAALASR---EEDQDAI---------DTAVLG-------SAKDLKEARDGYKVLEF 358
Query: 551 VPFNSLNKF-HLTVHFSPLNKYFLLMKGAPEVIMERCTTMMAESDKEAFLTAEKKYELED 609
VPF+ ++K TV K F + KGAP+VI++ + ++ KE E+K E +
Sbjct: 359 VPFDPVDKRTEATVEDPETGKRFKVTKGAPQVILD-----LCDNKKEI----EEKVE--E 407
Query: 610 KIKLFASKGERVLAFADLHLGQNNFPVNFKFSTDPMNFPSSGFRLIGLISLYDPPRPAVP 669
K+ AS+G R L A + +GL+ L+DPPR
Sbjct: 408 KVDELASRGYRALGVA-------------------RTDEEGRWHFLGLLPLFDPPRHDTK 448
Query: 670 DAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHILSETSSDDNVFTGTDLRKITDEELKDI 729
+ I+ G+ V MVTGDH AK A N++T L K + + D+
Sbjct: 449 ETIERARHLGVEVKMVTGDHLAIAKETA------RRLGLGTNIYTADVLLKGDNRD--DL 500
Query: 730 LETNKELV-----FARTSPLQKLRIVELYQSLDEIVAVTGDGVNDAPALKKADIGIAM-G 783
E+V FA P K IVE+ Q +V +TGDGVNDAPALKKAD+GIA+ G
Sbjct: 501 PSGLGEMVEDADGFAEVFPEHKYEIVEILQKRGHLVGMTGDGVNDAPALKKADVGIAVAG 560
Query: 784 ITGSEVSKQTADMILMDDNFASIVLGIEEGRLIFDNLKKSIAYILASNIPEILPFLFYIF 843
T + ++ AD++L + + IV I E R IF +K + Y +A I I+ F +
Sbjct: 561 AT--DAARSAADIVLTEPGLSVIVDAILESRKIFQRMKSYVIYRIAETI-RIVFFFGLLI 617
Query: 844 LGIPLPVSTVTVLCIDLGTDMWPAVSLAYEKPESNIMSREPRNPRTDHLVGRKLVTYAYF 903
L + + V+ I + D +++AY+ + S+ P R++ T +
Sbjct: 618 LILNFYFPPIMVVIIAILNDG-TIMTIAYDNVKP---SKLP-----QRWNLREVFTMSTV 668
Query: 904 HLGILETLAGFLTYFHVMYDAGW 926
LGI ++ FL + D +
Sbjct: 669 -LGIYLVISTFLLL-AIALDTTF 689
>gnl|CDD|130587 TIGR01524, ATPase-IIIB_Mg, magnesium-translocating P-type ATPase.
This model describes the magnesium translocating P-type
ATPase found in a limited number of bacterial species
and best described in Salmonella typhimurium, which
contains two isoforms. These transporters are active in
low external Mg2+ concentrations and pump the ion into
the cytoplasm. The magnesium ATPases have been
classified as type IIIB by a phylogenetic analysis
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 867
Score = 296 bits (758), Expect = 2e-86
Identities = 211/751 (28%), Positives = 349/751 (46%), Gaps = 89/751 (11%)
Query: 110 EVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYVLVGYIF 169
+ E + E L L H GL+ +EV RL + GPN ++ ++ N+ +L+
Sbjct: 10 NNLLKESQMGKETLLRKLGVHET-GLTNVEVTERLAEFGPNQTVEEKKVPNLRLLIRAFN 68
Query: 170 RGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGMFSFYQERKSSHI 229
F +L +S+L D+L +I+AL + +G+ F QE ++
Sbjct: 69 NPFIYILAMLMGVSYLT-------------DDLEATVIIALMVLASGLLGFIQESRAERA 115
Query: 230 TESFAKMIPTRATVIR------NGSVKEIDSAGLVRGDIVLLKIGDKVPADIRLIEIQDL 283
+ M+ ATV+R NGS+ E+ LV GD++ L GD +PAD R+I +DL
Sbjct: 116 AYALKNMVKNTATVLRVINENGNGSMDEVPIDALVPGDLIELAAGDIIPADARVISARDL 175
Query: 284 KAENSSLTGE---VEPVTCTLGATNSFAVESRNLVFFSTNLVSGSGKGVVILTGSNTVMG 340
S+LTGE VE A + +E NL F TN++SG + VV+ TGS+T G
Sbjct: 176 FINQSALTGESLPVEKFVEDKRARDPEILERENLCFMGTNVLSGHAQAVVLATGSSTWFG 235
Query: 341 KIAGLTNRLEKKTTPIEQEVQHFMRLISMWALTLGAICFLLALYIGYNWLNACVYVIGII 400
+A + T ++ V+ +L+ + L + + ++ + +WL A ++ + +
Sbjct: 236 SLAIAATE-RRGQTAFDKGVKSVSKLLIRFMLVMVPVVLMINGLMKGDWLEAFLFALAVA 294
Query: 401 VANVPEGLLATLTVSLTLTAKRLASKNCIVRRLQTVETLGSIRTICTDKTGTLTQNKMTV 460
V PE L ++ +L A ++ K IV+ L ++ G++ +CTDKTGTLTQ+K+ +
Sbjct: 295 VGLTPEMLPMIVSSNLAKGAINMSKKKVIVKELSAIQNFGAMDILCTDKTGTLTQDKIEL 354
Query: 461 LHLSFNREIYHVKNGVDVDIQNFETNTTYKTLVRAACLCSKAEFEPNQDNIPMRERKASG 520
+D + T + +++ A L S F+ N+ A
Sbjct: 355 EK--------------HIDS----SGETSERVLKMAWLNS--YFQTGWKNVLDHAVLAKL 394
Query: 521 DATEVGILHFIQPRIKSIQDVRNTFPKVTEVPFNSLNKFHLTVHFSPLNKYFLLMKGAPE 580
D + + S + KV E+PF+ + V + L+ KGA E
Sbjct: 395 DES-------AARQTAS------RWKKVDEIPFDFDRRRLSVVVENRAEVTRLICKGAVE 441
Query: 581 VIMERCTTMMAESDKEAFLTAEKKYELEDKIKLFASKGERVLAFA--DLHLGQNNFPVNF 638
++ C T L+ +K EL+D +G RV+A A L +G+ +F
Sbjct: 442 EMLTVC-THKRFGGAVVTLSESEKSELQDMTAEMNRQGIRVIAVATKTLKVGEADFTK-- 498
Query: 639 KFSTDPMNFPSSGFRLIGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAI 698
TD + G + DPP+ + +AI A K GI V ++TGD+ I
Sbjct: 499 ---TD-----EEQLIIEGFLGFLDPPKESTKEAIAALFKNGINVKVLTGDNEIVTARI-- 548
Query: 699 KCHILSETSSDDN-VFTGTDLRKITDEELKDILETNKELVFARTSPLQKLRIVELYQSLD 757
C E D N G D+ +++DEEL L K +FAR +P+QK RI+ L +
Sbjct: 549 -CQ---EVGIDANDFLLGADIEELSDEELARELR--KYHIFARLTPMQKSRIIGLLKKAG 602
Query: 758 EIVAVTGDGVNDAPALKKADIGIAMGITGSEVSKQTADMILMDDNFASIVLGIEEGRLIF 817
V GDG+NDAPAL+KAD+GI++ T ++++K+ +D+IL++ + + G+ EGR F
Sbjct: 603 HTVGFLGDGINDAPALRKADVGISVD-TAADIAKEASDIILLEKSLMVLEEGVIEGRNTF 661
Query: 818 DNLKKSIAYILASNIPEI---------LPFL 839
N+ K + +SN + +PFL
Sbjct: 662 GNILKYLKMTASSNFGNVFSVLVASAFIPFL 692
>gnl|CDD|236705 PRK10517, PRK10517, magnesium-transporting ATPase MgtA;
Provisional.
Length = 902
Score = 279 bits (716), Expect = 2e-80
Identities = 209/756 (27%), Positives = 347/756 (45%), Gaps = 120/756 (15%)
Query: 121 EELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYVLVGYIFRG-FSALLWFG 179
EEL+ DTHP+ GL+E EV+ E+ G N LP + + +V + +R F+ LL
Sbjct: 55 EELWKTFDTHPE-GLNEAEVESAREQHGENELPAQKPLP-WWVHLWVCYRNPFNILLTIL 112
Query: 180 ALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGMFSFYQERKSSHITESFAKMIPT 239
+S+ ++L+ ++AL ++ + +F QE +S+ ++ M+
Sbjct: 113 GAISYAT-------------EDLFAAGVIALMVAISTLLNFIQEARSTKAADALKAMVSN 159
Query: 240 RATVIRNGSVK------EIDSAGLVRGDIVLLKIGDKVPADIRLIEIQDLKAENSSLTGE 293
ATV+R + K EI LV GDI+ L GD +PAD+R+++ +DL +SLTGE
Sbjct: 160 TATVLRVINDKGENGWLEIPIDQLVPGDIIKLAAGDMIPADLRILQARDLFVAQASLTGE 219
Query: 294 ---VEPVTCTLGATNSFAVESRNLVFFSTNLVSGSGKGVVILTGSNTVMGKIAGLTNRLE 350
VE T +S +E L F TN+VSG+ + VVI TG+NT G++AG + +
Sbjct: 220 SLPVEKFATTRQPEHSNPLECDTLCFMGTNVVSGTAQAVVIATGANTWFGQLAGRVSEQD 279
Query: 351 KKTTPIEQEVQHFMRLISMWALTLGAICFLLALYIGYNWLNACVYVIGIIVANVPEGLLA 410
+ +Q + L+ + L + + L+ Y +W A ++ + + V PE L
Sbjct: 280 SEPNAFQQGISRVSWLLIRFMLVMAPVVLLINGYTKGDWWEAALFALSVAVGLTPEMLPM 339
Query: 411 TLTVSLTLTAKRLASKNCIVRRLQTVETLGSIRTICTDKTGTLTQNKMT----------- 459
+T +L A +L+ + IV+RL ++ G++ +CTDKTGTLTQ+K+
Sbjct: 340 IVTSTLARGAVKLSKQKVIVKRLDAIQNFGAMDILCTDKTGTLTQDKIVLENHTDISGKT 399
Query: 460 ---VLHLSFNREIYHVKNGVDVDIQNFETNTTYKTLVRAACLCSKAEFEPNQDNIPMRER 516
VLH ++ Y T K L+ A L + E R
Sbjct: 400 SERVLHSAWLNSHYQ---------------TGLKNLLDTAVL-EGVDEE--------SAR 435
Query: 517 KASGDATEVGILHFIQPRIKSIQDVRNTFPKVTEVPFNSLNKFHLTVHFSPLNKYFLLM- 575
+ + K+ E+PF+ + ++V + ++ L+
Sbjct: 436 SLASR-----------------------WQKIDEIPFD-FERRRMSVVVAENTEHHQLIC 471
Query: 576 KGAPEVIMERCTTMMAESDKEAFLTAEKKYELEDKIKLFASKGERVLAFA--DLHLGQNN 633
KGA E I+ C+ + + L ++ +G RV+A A L + +
Sbjct: 472 KGALEEILNVCSQVRHNGEIVP-LDDIMLRRIKRVTDTLNRQGLRVVAVATKYLPAREGD 530
Query: 634 FPVNFKFSTDPMNFPSSGFRLIGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTA 693
+ D S L G I+ DPP+ A+ A +G+ V ++TGD A
Sbjct: 531 YQR-----AD-----ESDLILEGYIAFLDPPKETTAPALKALKASGVTVKILTGDSELVA 580
Query: 694 KAIAIKCHILSETSSD-DNVFTGTDLRKITDEELKDILETNKELVFARTSPLQKLRIVEL 752
+ CH E D V G+D+ ++D+EL ++ E +FAR +P+ K RIV L
Sbjct: 581 AKV---CH---EVGLDAGEVLIGSDIETLSDDELANLAERTT--LFARLTPMHKERIVTL 632
Query: 753 YQSLDEIVAVTGDGVNDAPALKKADIGIAMGITGSEVSKQTADMILMDDNFASIVLGIEE 812
+ +V GDG+NDAPAL+ ADIGI++ +++++ AD+IL++ + + G+ E
Sbjct: 633 LKREGHVVGFMGDGINDAPALRAADIGISVD-GAVDIAREAADIILLEKSLMVLEEGVIE 691
Query: 813 GRLIFDNLKKSIAYILASNIPEI---------LPFL 839
GR F N+ K I +SN + LPFL
Sbjct: 692 GRRTFANMLKYIKMTASSNFGNVFSVLVASAFLPFL 727
>gnl|CDD|237914 PRK15122, PRK15122, magnesium-transporting ATPase; Provisional.
Length = 903
Score = 259 bits (663), Expect = 5e-73
Identities = 209/748 (27%), Positives = 354/748 (47%), Gaps = 103/748 (13%)
Query: 119 PLEELYSILDTHPDRGLSELEVKRRLEKDGPN---------SLPQKYR-INNVYVLVGYI 168
LEE + L+TH GL+E + RL++ GPN +L Q + NN ++ V
Sbjct: 31 SLEETLANLNTHRQ-GLTEEDAAERLQRYGPNEVAHEKPPHALVQLLQAFNNPFIYV--- 86
Query: 169 FRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCI-VTGMFSFYQERKSS 227
L+ A+ F Y L EE D G+I+ LT + ++G+ F+QE +S+
Sbjct: 87 ------LMVLAAISFFTDYWLPLRRGEE--TD--LTGVIIILTMVLLSGLLRFWQEFRSN 136
Query: 228 HITESFAKMIPTRATVIRNGSV------KEIDSAGLVRGDIVLLKIGDKVPADIRLIEIQ 281
E+ M+ T ATV+R G +EI LV GDIV L GD +PAD+RLIE +
Sbjct: 137 KAAEALKAMVRTTATVLRRGHAGAEPVRREIPMRELVPGDIVHLSAGDMIPADVRLIESR 196
Query: 282 DLKAENSSLTGEVEPVTC--TLGA-----------TNSFAVESRNLVFFSTNLVSGSGKG 328
DL + LTGE PV TLGA ++ N+ F TN+VSG+
Sbjct: 197 DLFISQAVLTGEALPVEKYDTLGAVAGKSADALADDEGSLLDLPNICFMGTNVVSGTATA 256
Query: 329 VVILTGSNTVMGKIAG--LTNRLEKKTTPIEQEVQHFMRLISMWALTLGAICFLLALYIG 386
VV+ TGS T G +A + R + T ++ V L+ + L + + L+ +
Sbjct: 257 VVVATGSRTYFGSLAKSIVGTRAQ---TAFDRGVNSVSWLLIRFMLVMVPVVLLINGFTK 313
Query: 387 YNWLNACVYVIGIIVANVPEGLLATLTVSLTLTAKRLASKNCIVRRLQTVETLGSIRTIC 446
+WL A ++ + + V PE L ++ +L A +A + +V+RL ++ G++ +C
Sbjct: 314 GDWLEALLFALAVAVGLTPEMLPMIVSSNLAKGAIAMARRKVVVKRLNAIQNFGAMDVLC 373
Query: 447 TDKTGTLTQNKMTVLHLSFNREIYHVKNGVDVDIQNFETNTTYKTLVRAACLCSKAEFEP 506
TDKTGTLTQ+++ + H H +DV + E +++ A L S
Sbjct: 374 TDKTGTLTQDRIILEH--------H----LDVSGRKDE------RVLQLAWLNS------ 409
Query: 507 NQDNIPMRERKASG--DATEVGILHFIQPRIKSIQDVRNTFPKVTEVPFNSLNKFHLTVH 564
SG + + ++ F + + ++ + KV E+PF+ + + V
Sbjct: 410 ---------FHQSGMKNLMDQAVVAFAEGNPEIVKPAG--YRKVDELPFDFVRRRLSVVV 458
Query: 565 FSPLNKYFLLMKGAPEVIMERCTTMMAESDKEAFLTAEKKYELEDKIKLFASKGERVLAF 624
++ L+ KGA E ++ T + + D L ++ L + + + G RVL
Sbjct: 459 EDAQGQHLLICKGAVEEMLAVATHVR-DGDTVRPLDEARRERLLALAEAYNADGFRVLLV 517
Query: 625 ADLHLGQNNFPVNFKFSTDPMNFPSSGFRLIGLISLYDPPRPAVPDAIDACHKAGIRVIM 684
A + ++ST + G ++ DPP+ + AI A + G+ V +
Sbjct: 518 ATREIPGGE--SRAQYSTADER----DLVIRGFLTFLDPPKESAAPAIAALRENGVAVKV 571
Query: 685 VTGDHPCTAKAIAIKCHILSETSSDDNV-FTGTDLRKITDEELKDILETNKELVFARTSP 743
+TGD+P + I E + GT++ + D L +E + VFA+ +P
Sbjct: 572 LTGDNP------IVTAKICREVGLEPGEPLLGTEIEAMDDAALAREVE--ERTVFAKLTP 623
Query: 744 LQKLRIVELYQSLDEIVAVTGDGVNDAPALKKADIGIAMGITGSEVSKQTADMILMDDNF 803
LQK R+++ Q+ V GDG+NDAPAL+ AD+GI++ +G++++K++AD+IL++ +
Sbjct: 624 LQKSRVLKALQANGHTVGFLGDGINDAPALRDADVGISVD-SGADIAKESADIILLEKSL 682
Query: 804 ASIVLGIEEGRLIFDNLKKSIAYILASN 831
+ G+ +GR F N+ K + +SN
Sbjct: 683 MVLEEGVIKGRETFGNIIKYLNMTASSN 710
>gnl|CDD|215733 pfam00122, E1-E2_ATPase, E1-E2 ATPase.
Length = 222
Score = 193 bits (493), Expect = 3e-56
Identities = 84/234 (35%), Positives = 130/234 (55%), Gaps = 13/234 (5%)
Query: 206 IILALTCIVTGMFSFYQERKSSHITESFAKMIPTRA-TVIRNGSVKEIDSAGLVRGDIVL 264
IIL L I + YQE ++ ++ K++P A TVIR+G +EI + LV GDIVL
Sbjct: 1 IILLLVLINA-LLEAYQEYRARKALKALKKLLPPTAATVIRDGKEEEIPADELVVGDIVL 59
Query: 265 LKIGDKVPADIRLIEIQDLKAENSSLTGEVEPVTCTLGATNSFAVESRNLVFFSTNLVSG 324
LK GD+VPAD R+IE L+ + S+LTGE PV + G + VF T ++SG
Sbjct: 60 LKPGDRVPADGRIIE-GSLEVDESALTGESLPVEKSRG----------DTVFAGTVVLSG 108
Query: 325 SGKGVVILTGSNTVMGKIAGLTNRLEKKTTPIEQEVQHFMRLISMWALTLGAICFLLALY 384
K +V TG +T +GKIA L + TP+++ + +++ L L + FL+ +
Sbjct: 109 ELKVIVTATGEDTELGKIARLVEEAKSAKTPLQRLLDKLAKILVPIVLALAILVFLIWFF 168
Query: 385 IGYNWLNACVYVIGIIVANVPEGLLATLTVSLTLTAKRLASKNCIVRRLQTVET 438
G ++L A + + ++VA PE L + ++L + A RLA K +V+ L +ET
Sbjct: 169 RGGDFLEALLRALAVLVAACPEALPLAVPLALAVGAGRLAKKGILVKNLSALET 222
>gnl|CDD|233513 TIGR01657, P-ATPase-V, P-type ATPase of unknown pump specificity
(type V). These P-type ATPases form a distinct clade
but the substrate of their pumping activity has yet to
be determined. This clade has been designated type V in.
Length = 1054
Score = 166 bits (421), Expect = 9e-42
Identities = 192/879 (21%), Positives = 303/879 (34%), Gaps = 195/879 (22%)
Query: 122 ELYSILDTHPDRGLSELEVKRRLEKDGPNSL--PQKYRINNVYVLVG------YIFRGFS 173
GL+ ++ +R K G N + P + + +L Y+F+ FS
Sbjct: 127 FGVYSTCAGHSNGLTTGDIAQRKAKYGKNEIEIPVP---SFLELLKEEVLHPFYVFQVFS 183
Query: 174 ALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGMFSFYQERKSSHITESF 233
+LW L + Y L + ++ T I S YQ RK +
Sbjct: 184 VILWL--LDEYYYYSL--------------CIVFMSSTSISL---SVYQIRKQM---QRL 221
Query: 234 AKMI--PTRATVIRNGSVKEIDSAGLVRGDIVLLKI--GDKVPADIRLIEIQDLKAENSS 289
M+ P VIRNG I S LV GDIV + +P D L+ + E S
Sbjct: 222 RDMVHKPQSVIVIRNGKWVTIASDELVPGDIVSIPRPEEKTMPCDSVLLSGSCIVNE-SM 280
Query: 290 LTGEVEPVT------CTLGATNSFAVE--SRNLVFFSTNLV-------SGSGKGVVILTG 334
LTGE PV + F E ++++F T ++ +V+ TG
Sbjct: 281 LTGESVPVLKFPIPDNGDDDEDLFLYETSKKHVLFGGTKILQIRPYPGDTGCLAIVVRTG 340
Query: 335 SNTVMGKIAGLTNRLEKKTTPIEQEVQHFMRLISMWALTLGAICFLLALYIGYNWLNACV 394
+T G++ + + L K + F ++ + L L + + I
Sbjct: 341 FSTSKGQL--VRSILYPKPRVFKFYKDSFKFILFLAVLALIGFIYTIIELIKDG-RPLGK 397
Query: 395 YVIG---IIVANVPEGLLATLTVSLTLTAKRLASKNCIVRRLQTVETLGSIRTICTDKTG 451
++ II VP L A L++ + + RL K + G I C DKTG
Sbjct: 398 IILRSLDIITIVVPPALPAELSIGINNSLARLKKKGIFCTSPFRINFAGKIDVCCFDKTG 457
Query: 452 TLTQNKMTVLHLSFNREIYHVKNGVDVDIQNFETNTTYKTLVR-AACLCSKAEFEPNQDN 510
TLT++ + + R + + + T + L + +
Sbjct: 458 TLTEDGLDL------RGVQGLSGNQEFL--KIVTEDSSLKPSITHKALATCHSLTKLEGK 509
Query: 511 IPMRERKASGDATEVGILHFI-----------QPRIKSIQDVRNTFPKVTEV----PFNS 555
+ GD + + +P + P+ + F+S
Sbjct: 510 L-------VGDPLDKKMFEATGWTLEEDDESAEPTSILAVVRTDDPPQELSIIRRFQFSS 562
Query: 556 -LNKFHLTVHFSPLNKYFLLMKGAPEVIMERCTTMMAESDKEAFLTAEKKYELEDKIKLF 614
L + + V + +KGAPE I C+ SD + L + +
Sbjct: 563 ALQRMSVIVSTNDERSPDAFVKGAPETIQSLCSPETVPSDYQEVLKS------------Y 610
Query: 615 ASKGERVLAFADLHLGQNNFPVNFKFSTDPMNFPSSGFRLIGLISLYDPPRPAVPDAIDA 674
+G RVLA A L + S D + S +G I +P +P + I
Sbjct: 611 TREGYRVLALAYKELPKLTLQKAQDLSRDAV---ESNLTFLGFIVFENPLKPDTKEVIKE 667
Query: 675 CHKAGIRVIMVTGDHPCTAKAIAIKCHIL----------------------------SET 706
+A IR +M+TGD+P TA +A +C I+ S
Sbjct: 668 LKRASIRTVMITGDNPLTAVHVARECGIVNPSNTLILAEAEPPESGKPNQIKFEVIDSIP 727
Query: 707 SSDDNVFTGTDLRKITDEELKDILETNKEL--------------------------VFAR 740
+ V L + + E D+L + L VFAR
Sbjct: 728 FASTQVEIPYPLGQDSVE---DLLASRYHLAMSGKAFAVLQAHSPELLLRLLSHTTVFAR 784
Query: 741 TSPLQKLRIVELYQSLDEIVAVTGDGVNDAPALKKADIGIAM-----GITGSEVSKQTAD 795
+P QK +VEL Q LD V + GDG ND ALK+AD+GI++ + SK
Sbjct: 785 MAPDQKETLVELLQKLDYTVGMCGDGANDCGALKQADVGISLSEAEASVAAPFTSKLA-- 842
Query: 796 MILMDDNFASIVLGIEEGRLIFDNLKKSIA----YILASNIPEI-LPFLFYI-------- 842
+ + + I EGR L S L S I + L+ I
Sbjct: 843 ------SISCVPNVIREGRC---ALVTSFQMFKYMALYSLIQFYSVSILYLIGSNLGDGQ 893
Query: 843 FLGIPLPVSTVTVLCIDLGTDMWPAVSLAYEKPESNIMS 881
FL I L + L + P L+ E+P SN+ S
Sbjct: 894 FLTIDLLLIFPVALLMSRNK---PLKKLSKERPPSNLFS 929
>gnl|CDD|225127 COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 713
Score = 140 bits (354), Expect = 4e-34
Identities = 65/196 (33%), Positives = 97/196 (49%), Gaps = 44/196 (22%)
Query: 653 RLIGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHILSETSSDDNV 712
+L+G+I+L D RP +AI A GI+V+M+TGD+ TA+AIA + I
Sbjct: 527 KLVGVIALADELRPDAKEAIAALKALGIKVVMLTGDNRRTAEAIAKELGI---------- 576
Query: 713 FTGTDLRKITDEELKDILETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGDGVNDAPA 772
DE V A P K IV Q+ VA+ GDG+NDAPA
Sbjct: 577 ----------DE------------VRAELLPEDKAEIVRELQAEGRKVAMVGDGINDAPA 614
Query: 773 LKKADIGIAMGITGSEVSKQTADMILMDDNFASIVLGIEEGRLIFDNLKKSIAYILASNI 832
L AD+GIAMG +G++V+ + AD++LM D+ +++ I+ R +K+++ A
Sbjct: 615 LAAADVGIAMG-SGTDVAIEAADVVLMRDDLSAVPEAIDLSRATRRIIKQNLF--WA--- 668
Query: 833 PEILPFLFYIFLGIPL 848
Y + IPL
Sbjct: 669 ------FGYNAIAIPL 678
Score = 96.9 bits (242), Expect = 2e-20
Identities = 68/259 (26%), Positives = 114/259 (44%), Gaps = 23/259 (8%)
Query: 212 CIVTGMFS---FYQER---KSSHITESFAKMIPTRATVIR-NGSVKEIDSAGLVRGDIVL 264
++ +F + + R ++ + + P ATV+R +G +E+ + GDIVL
Sbjct: 178 AMLIFLFLLGRYLEARAKGRARRAIRALLDLAPKTATVVRGDGEEEEVPVEEVQVGDIVL 237
Query: 265 LKIGDKVPADIRLIEIQDLKAENSSLTGEVEPVTCTLGATNSFAVESRNLVFFSTNLVSG 324
++ G+++P D ++ E S LTGE PV G VF T + G
Sbjct: 238 VRPGERIPVDGVVVSGSSSVDE-SMLTGESLPVEKKPGDE----------VFAGTVNLDG 286
Query: 325 SGKGVVILTGSNTVMGKIAGLTNRLEKKTTPIEQEVQHFMRLISMWALTLGAICFLL-AL 383
S V G++T + +I L + PI++ L + A+ F L L
Sbjct: 287 SLTIRVTRVGADTTLARIIRLVEEAQSSKAPIQRLADRVASYFVPVVLVIAALTFALWPL 346
Query: 384 YIGYNWLNACVYVIGIIVANVPEGL-LATLTVSLTLTAKRLASKNCI-VRRLQTVETLGS 441
+ G +W A + ++V P L LAT T L + A++ I ++ + +E L
Sbjct: 347 FGGGDWETALYRALAVLVIACPCALGLATPTAILVGIGR--AARRGILIKGGEALERLAK 404
Query: 442 IRTICTDKTGTLTQNKMTV 460
+ T+ DKTGTLT+ K V
Sbjct: 405 VDTVVFDKTGTLTEGKPEV 423
>gnl|CDD|233447 TIGR01525, ATPase-IB_hvy, heavy metal translocating P-type ATPase.
This model encompasses two equivalog models for the
copper and cadmium-type heavy metal transporting P-type
ATPases (TIGR01511 and TIGR01512) as well as those
species which score ambiguously between both models. For
more comments and references, see the files on TIGR01511
and 01512.
Length = 556
Score = 122 bits (308), Expect = 8e-29
Identities = 69/211 (32%), Positives = 107/211 (50%), Gaps = 39/211 (18%)
Query: 653 RLIGLISLYDPPRPAVPDAIDACHKAG-IRVIMVTGDHPCTAKAIAIKCHILSETSSDDN 711
L+G+I+L D RP +AI A +AG I+++M+TGD+ A+A+A + I
Sbjct: 374 ELLGVIALRDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGI--------- 424
Query: 712 VFTGTDLRKITDEELKDILETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGDGVNDAP 771
DE V A P KL IV+ Q +VA+ GDG+NDAP
Sbjct: 425 -----------DE------------VHAELLPEDKLAIVKELQEEGGVVAMVGDGINDAP 461
Query: 772 ALKKADIGIAMGITGSEVSKQTADMILMDDNFASIVLGIEEGRLIFDNLKKSIAYILASN 831
AL AD+GIAMG GS+V+ + AD++L++D+ +S+ I+ R +K+++A+ L N
Sbjct: 462 ALAAADVGIAMG-AGSDVAIEAADIVLLNDDLSSLPTAIDLSRKTRRIIKQNLAWALGYN 520
Query: 832 IPEILPFLFYIFLGIPLPVSTVTVLCIDLGT 862
+ I L + L + VL + T
Sbjct: 521 LVAIPLAAG-GLLPLWL----LAVLLHEGST 546
Score = 106 bits (266), Expect = 1e-23
Identities = 66/282 (23%), Positives = 120/282 (42%), Gaps = 25/282 (8%)
Query: 204 LGIILALTCIVTGMFSF------YQERKSSHITESFAKMIPTRATVIR-NGSVKEIDSAG 256
+G++L ++ +F + ++S + + P+ A V++ +GS +E+
Sbjct: 15 MGLVLEGALLLF-LFLLGETLEERAKGRASDALSALLALAPSTARVLQGDGSEEEVPVEE 73
Query: 257 LVRGDIVLLKIGDKVPADIRLIEIQDLKAENSSLTGEVEPVTCTLGATNSFAVESRNLVF 316
L GDIV+++ G+++P D +I + E S+LTGE PV G VF
Sbjct: 74 LQVGDIVIVRPGERIPVDGVVISGESEVDE-SALTGESMPVEKKEGDE----------VF 122
Query: 317 FSTNLVSGSGKGVVILTGSNTVMGKIAGLTNRLEKKTTPIEQEVQHFMRLISMWALTLGA 376
T GS V G ++ + +I L + PI++ L +
Sbjct: 123 AGTINGDGSLTIRVTKLGEDSTLAQIVELVEEAQSSKAPIQRLADRIASYYVPAVLAIAL 182
Query: 377 ICFLLALYIGYNWLNACVYVIGIIVANVPEGL-LATLTVSLTLTAKRLASKNCI-VRRLQ 434
+ F++ L +G A + ++V P L LAT L A++ I ++
Sbjct: 183 LTFVVWLALGALG--ALYRALAVLVVACPCALGLATPVAILVAIGV--AARRGILIKGGD 238
Query: 435 TVETLGSIRTICTDKTGTLTQNKMTVLHLSFNREIYHVKNGV 476
+E L ++T+ DKTGTLT K TV+ + + + +
Sbjct: 239 ALEKLAKVKTVVFDKTGTLTTGKPTVVDIEPLDDASISEEEL 280
>gnl|CDD|225126 COG2216, KdpB, High-affinity K+ transport system, ATPase chain B
[Inorganic ion transport and metabolism].
Length = 681
Score = 122 bits (308), Expect = 1e-28
Identities = 148/638 (23%), Positives = 249/638 (39%), Gaps = 131/638 (20%)
Query: 175 LLWFGALLSFLAYLLEA--ETNEEKPQDNLWLGIILALTCIVTGMFSFYQERKSSHITES 232
++ G++L+ + NL + IIL T + E + +S
Sbjct: 37 VVEVGSILTTFLTIFPDLFGGTGGSRLFNLAITIILWFTVLFANFAEAVAEGRGKAQADS 96
Query: 233 FAKM-IPTRATVIRN-GSVKEIDSAGLVRGDIVLLKIGDKVPADIRLIEIQDLKAENSSL 290
K T A ++R GS++ + + L +GDIVL++ G+ +P+D +IE E S++
Sbjct: 97 LRKTKTETIARLLRADGSIEMVPATELKKGDIVLVEAGEIIPSDGEVIEGVASVDE-SAI 155
Query: 291 TGEVEPVTCTLGATNSFAVESRNLVFFSTNLVSGSGKGVVILTGSNTVMGKIAGLTNRLE 350
TGE PV G + V T ++S K + T + ++ L E
Sbjct: 156 TGESAPVIRESGG-------DFSSVTGGTRVLSDWLKIRITANPGETFLDRMIALVEGAE 208
Query: 351 KKTTPIEQEVQHFMRLISMWALTLGAICFL--LALYIGYNWLNACVYVIGIIVANVPE-- 406
++ TP E+ + L + + L A+ L A+Y G + V ++ ++V +P
Sbjct: 209 RQKTP--NEIALTILLSGLTLIFLLAVATLYPFAIYSGGGAASVTV-LVALLVCLIPTTI 265
Query: 407 -GLLATLTVSLTLTAKRLASKNCIVRRLQTVETLGSIRTICTDKTGTLT-QNKMTVLHLS 464
GLL+ + ++ R+ N I + VE G + T+ DKTGT+T N+
Sbjct: 266 GGLLSAIGIA---GMDRVTQFNVIATSGRAVEAAGDVDTLLLDKTGTITLGNRQAS---- 318
Query: 465 FNREIYHVKNGVDVDIQNFETNTTYKTLVRAACLCSKAEFEPNQDNIPMRERKASGDATE 524
E V GV + L AA L S A+ P +I +K + E
Sbjct: 319 ---EFIPV-PGVSE-----------EELADAAQLASLADETPEGRSIVELAKKLGIELRE 363
Query: 525 VGILHFIQPRIKSIQDVRNTFPKVTEVPFNSLNKFHLTVHFSPLNKYFLLMKGAPEVIME 584
+ + VPF + + V + KGA + I
Sbjct: 364 DDLQSHAEF-----------------VPFTAQTRMS-GVDLPGGREIR---KGAVDAIRR 402
Query: 585 RCTTMMAESDKEAFLTAEKKYELEDKIKLFASKGERVLAFADLHLGQNNFPVNFKFSTDP 644
++ L+ + + G L + N
Sbjct: 403 YVRERGGHIPED----------LDAAVDEVSRLGGTPLVVVE-----NG----------- 436
Query: 645 MNFPSSGFRLIGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHILS 704
R++G+I L D +P + + K GI+ +M+TGD+P TA AIA +
Sbjct: 437 --------RILGVIYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIA------A 482
Query: 705 ETSSDDNVFTGTDLRKITDEELKDILETNKELVFARTSPLQKLRIVELYQSLDEIVAVTG 764
E DD A +P KL ++ Q+ +VA+TG
Sbjct: 483 EAGVDD--------------------------FIAEATPEDKLALIRQEQAEGRLVAMTG 516
Query: 765 DGVNDAPALKKADIGIAMGITGSEVSKQTADMILMDDN 802
DG NDAPAL +AD+G+AM +G++ +K+ A+M+ +D N
Sbjct: 517 DGTNDAPALAQADVGVAMN-SGTQAAKEAANMVDLDSN 553
>gnl|CDD|130561 TIGR01497, kdpB, K+-transporting ATPase, B subunit. This model
describes the P-type ATPase subunit of the complex
responsible for translocating potassium ions across
biological membranes in microbes. In E. coli and other
species, this complex consists of the proteins KdpA,
KdpB, KdpC and KdpF. KdpB is the ATPase subunit, while
KdpA is the potassium-ion translocating subunit. The
function of KdpC is unclear, although cit has been
suggested to couple the ATPase subunit to the
ion-translocating subunit , while KdpF serves to
stabilize the complex. The potassium P-type ATPases have
been characterized as Type IA based on a phylogenetic
analysis which places this clade closest to the
heavy-metal translocating ATPases (Type IB). Others
place this clade closer to the Na+/K+ antiporter type
(Type IIC) based on physical characteristics. This model
is very clear-cut, with a strong break between trusted
hits and noise. All members of the seed alignment, from
Clostridium, Anabaena and E. coli are in the
characterized table. One sequence above trusted,
OMNI|NTL01TA01282, is apparently mis-annotated in the
primary literature, but properly annotated by TIGR
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 675
Score = 118 bits (297), Expect = 3e-27
Identities = 145/623 (23%), Positives = 252/623 (40%), Gaps = 142/623 (22%)
Query: 231 ESFAKMIPTRATVIRNGSVKEIDSAGLVRGDIVLLKIGDKVPADIRLIEIQDLKAENSSL 290
+FAK++ +G++ ++ + L +GDIVL++ GD +P D +IE + S++
Sbjct: 104 TTFAKLLR------DDGAIDKVPADQLKKGDIVLVEAGDVIPCDGEVIE-GVASVDESAI 156
Query: 291 TGEVEPVTCTLGATNSFAVESRNLVFFSTNLVSGSGKGVVILTGSNTVMGKIAGLTNRLE 350
TGE PV G FA V T ++S T + ++ L +
Sbjct: 157 TGESAPVIKESGG--DFAS-----VTGGTRILSDWLVVECTANPGETFLDRMIALVEGAQ 209
Query: 351 KKTTPIEQEVQHFMRLISMWALTLGAICFLLALYIGYNWLNACVYV---IGIIVANVPE- 406
++ TP E + I + ALTL + L+ + + V + ++V +P
Sbjct: 210 RRKTPNEIALT-----ILLIALTLVFLLVTATLWPFAAYGGNAISVTVLVALLVCLIPTT 264
Query: 407 --GLLATLTVSLTLTAKRLASKNCIVRRLQTVETLGSIRTICTDKTGTLTQNKMTVLHLS 464
GLL+ + ++ R+ N I + VE G + T+ DKTGT+T
Sbjct: 265 IGGLLSAIGIA---GMDRVLGFNVIATSGRAVEACGDVDTLLLDKTGTITLG-------- 313
Query: 465 FNR--EIYHVKNGVDVDIQNFETNTTYKTLVRAACLCSKAEFEPNQDNIPMRERKASGDA 522
NR + GVD KTL AA L S A+ P +I + A
Sbjct: 314 -NRLASEFIPAQGVDE-----------KTLADAAQLASLADDTPEGKSIVIL-------A 354
Query: 523 TEVGILHFIQPRIKSIQDVRNTFPKVTEVPFNSLNKFHLTVHFSPLNKYFLLMKGAPEVI 582
++GI R +Q + TF V F + + L+ ++ KGA + I
Sbjct: 355 KQLGI------REDDVQSLHATF-----VEFTAQTRMSGI----NLDNGRMIRKGAVDAI 399
Query: 583 MERCTTMMAESDKEAFLTAEKKYELEDKIKLFASKGERVLAFADLHLGQNNFPVNFKFST 642
E++ T +L+ + A +G L +
Sbjct: 400 KRH-----VEANGGHIPT-----DLDQAVDQVARQGGTPLVVCE---------------- 433
Query: 643 DPMNFPSSGFRLIGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHI 702
R+ G+I L D + + + K GI+ IM+TGD+ TA AIA
Sbjct: 434 --------DNRIYGVIYLKDIVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIA----- 480
Query: 703 LSETSSDDNVFTGTDLRKITDEELKDILETNKELVFARTSPLQKLRIVELYQSLDEIVAV 762
+E DD A +P K+ ++ Q+ ++VA+
Sbjct: 481 -AEAGVDD--------------------------FIAEATPEDKIALIRQEQAEGKLVAM 513
Query: 763 TGDGVNDAPALKKADIGIAMGITGSEVSKQTADMILMDDNFASIVLGIEEGRLIFDNLKK 822
TGDG NDAPAL +AD+G+AM +G++ +K+ A+M+ +D + ++ + G+ +
Sbjct: 514 TGDGTNDAPALAQADVGVAMN-SGTQAAKEAANMVDLDSDPTKLIEVVHIGKQLLITRGA 572
Query: 823 SIAYILASNIPE---ILPFLFYI 842
+ +A+++ + I+P +F
Sbjct: 573 LTTFSIANDVAKYFAIIPAIFAA 595
>gnl|CDD|211664 TIGR01512, ATPase-IB2_Cd, heavy
metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase.
This model describes the P-type ATPase primarily
responsible for translocating cadmium ions (and other
closely-related divalent heavy metals such as cobalt,
mercury, lead and zinc) across biological membranes.
These transporters are found in prokaryotes and plants.
Experimentally characterized members of the seed
alignment include: SP|P37617 from E. coli, SP|Q10866
from Mycobacterium tuberculosis and SP|Q59998 from
Synechocystis PCC6803. The cadmium P-type ATPases have
been characterized as Type IB based on a phylogenetic
analysis which combines the copper-translocating ATPases
with the cadmium-translocating species. This model and
that describing the copper-ATPases (TIGR01511) are well
separated, and thus we further type the copper-ATPases
as IB1 and the cadmium-ATPases as IB2. Several sequences
which have not been characterized experimentally fall
just below trusted cutoff for both of these models
(SP|Q9CCL1 from Mycobacterium leprae, GP|13816263 from
Sulfolobus solfataricus, OMNI|NTL01CJ01098 from
Campylobacter jejuni, OMNI|NTL01HS01687 from
Halobacterium sp., GP|6899169 from Ureaplasma
urealyticum and OMNI|HP1503 from Helicobacter pylori)
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 536
Score = 113 bits (285), Expect = 5e-26
Identities = 69/210 (32%), Positives = 100/210 (47%), Gaps = 39/210 (18%)
Query: 653 RLIGLISLYDPPRPAVPDAIDACHKAGI-RVIMVTGDHPCTAKAIAIKCHILSETSSDDN 711
+G I L D PRP +AI GI +V+M+TGD A+ +A + I
Sbjct: 352 TYLGYILLSDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGI--------- 402
Query: 712 VFTGTDLRKITDEELKDILETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGDGVNDAP 771
DE V A P KL IV+ + VA+ GDG+NDAP
Sbjct: 403 -----------DE------------VHAELLPEDKLEIVKELREKYGPVAMVGDGINDAP 439
Query: 772 ALKKADIGIAMGITGSEVSKQTADMILMDDNFASIVLGIEEGRLIFDNLKKSIAYILASN 831
AL AD+GIAMG +GS+V+ +TAD++L++D+ + + I R +K+++ L
Sbjct: 440 ALAAADVGIAMGASGSDVAIETADVVLLNDDLSRLPQAIRLARRTRRIVKQNVVIALGII 499
Query: 832 IPEILPFLFYIFLGIPLPV-----STVTVL 856
+ IL LF L + L V STV V+
Sbjct: 500 LLLILLALFG-VLPLWLAVLGHEGSTVLVI 528
Score = 105 bits (265), Expect = 1e-23
Identities = 61/267 (22%), Positives = 108/267 (40%), Gaps = 24/267 (8%)
Query: 200 DNLWLGIILALTCIVTGMFSF------YQERKSSHITESFAKMIPTRATVIRNGSVKEID 253
G +L L +FS Y ++ ++ ++ P A V+R GS++E+
Sbjct: 16 GEYLEGALLLL------LFSIGETLEEYASGRARRALKALMELAPDTARVLRGGSLEEVA 69
Query: 254 SAGLVRGDIVLLKIGDKVPADIRLIEIQDLKAENSSLTGEVEPVTCTLGATNSFAVESRN 313
L GD+V++K G++VP D ++ E S+LTGE PV G
Sbjct: 70 VEELKVGDVVVVKPGERVPVDGVVLSGTSTVDE-SALTGESVPVEKAPGDE--------- 119
Query: 314 LVFFSTNLVSGSGKGVVILTGSNTVMGKIAGLTNRLEKKTTPIEQEVQHFMRLISMWALT 373
VF + G VV +++ + KI L + + ++ + F R + L
Sbjct: 120 -VFAGAINLDGVLTIVVTKLPADSTIAKIVNLVEEAQSRKAKTQRFIDRFARYYTPVVLA 178
Query: 374 LGAICFLLALYIGYNWLNACVYVIGIIVANVPEGLLATLTVSLTLTAKRLASKNCIVRRL 433
+ A+ L + W + ++V P L+ + + A +++
Sbjct: 179 I-ALAIWLVPGLLKRWPFWVYRALVLLVVASPCALVISAPAAYLSAISAAARHGILIKGG 237
Query: 434 QTVETLGSIRTICTDKTGTLTQNKMTV 460
+E L I+T+ DKTGTLT + V
Sbjct: 238 AALEALAKIKTVAFDKTGTLTTGRPKV 264
>gnl|CDD|233445 TIGR01511, ATPase-IB1_Cu, copper-(or silver)-translocating P-type
ATPase. This model describes the P-type ATPase
primarily responsible for translocating copper ions
accross biological membranes. These transporters are
found in prokaryotes and eukaryotes. This model
encompasses those species which pump copper ions out of
cells or organelles (efflux pumps such as CopA of
Escherichia coli ) as well as those which pump the ion
into cells or organelles either for the purpose of
supporting life in extremely low-copper environments
(for example CopA of Enterococcus hirae ) or for the
specific delivery of copper to a biological complex for
which it is a necessary component (for example FixI of
Bradyrhizobium japonicum, or CtaA and PacS of
Synechocystis). The substrate specificity of these
transporters may, to a varying degree, include silver
ions (for example, CopA from Archaeoglobus fulgidus).
Copper transporters from this family are well known as
the genes which are mutated in two human disorders of
copper metabolism, Wilson's and Menkes' diseases. The
sequences contributing to the seed of this model are all
experimentally characterized. The copper P-type ATPases
have been characterized as Type IB based on a
phylogenetic analysis which combines the
copper-translocating ATPases with the
cadmium-translocating species. This model and that
describing the cadmium-ATPases (TIGR01512) are well
separated, and thus we further type the copper-ATPases
as IB1 (and the cadmium-ATPases as IB2). Several
sequences which have not been characterized
experimentally fall just below the cutoffs for both of
these models. A sequence from Enterococcus faecalis
scores very high against this model, but yet is
annotated as an "H+/K+ exchanging ATPase". BLAST of this
sequence does not hit anything else annotated in this
way. This error may come from the characterization paper
published in 1987. Accession GP|7415611 from
Saccharomyces cerevisiae appears to be mis-annotated as
a cadmium resistance protein. Accession
OMNI|NTL01HS00542 from Halobacterium which scores above
trusted for this model is annotated as
"molybdenum-binding protein" although no evidence can be
found for this classification [Cellular processes,
Detoxification, Transport and binding proteins, Cations
and iron carrying compounds].
Length = 572
Score = 113 bits (285), Expect = 6e-26
Identities = 53/200 (26%), Positives = 94/200 (47%), Gaps = 44/200 (22%)
Query: 649 SSGFRLIGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHILSETSS 708
+ L G+++L D +P + I A + GI +M+TGD+ TAKA+A L
Sbjct: 400 AVNGELAGVLALADQLKPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVA---KELG---- 452
Query: 709 DDNVFTGTDLRKITDEELKDILETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGDGVN 768
I + V A P K +++ Q ++VA+ GDG+N
Sbjct: 453 ------------IEN-------------VRAEVLPDDKAALIKKLQEKGKVVAMVGDGIN 487
Query: 769 DAPALKKADIGIAMGITGSEVSKQTADMILMDDNFASIVLGIEEGRLIFDNLKKSIAYIL 828
DAPAL +AD+GIA+G G++V+ + AD++L+ ++ + I+ R +K+++ +
Sbjct: 488 DAPALAQADVGIAIG-AGTDVAIEAADVVLLRNDLNDVATAIDLSRKTLRRIKQNLLWAF 546
Query: 829 ASNIPEILPFLFYIFLGIPL 848
N+ + IP+
Sbjct: 547 GYNV-----------IAIPI 555
Score = 101 bits (255), Expect = 2e-22
Identities = 72/244 (29%), Positives = 118/244 (48%), Gaps = 20/244 (8%)
Query: 224 RKSSHITESFAKMIPTRATVIR-NGSVKEIDSAGLVRGDIVLLKIGDKVPADIRLIEIQD 282
++S AK+ P+ AT++ +G ++E+ L GDIV + G+K+P D +IE +
Sbjct: 76 GRASDALSKLAKLQPSTATLLTDDGEIEEVPVELLQPGDIVRVLPGEKIPVDGTVIEGES 135
Query: 283 LKAENSSLTGEVEPVTCTLGATNSFAVESRNLVFFSTNLVSGSGKGVVILT--GSNTVMG 340
E S +TGE PV +G V T V+G+G VV T G +T +
Sbjct: 136 EVDE-SLVTGESLPVPKKVGDP----------VIAGT--VNGTGSLVVRATATGEDTTLA 182
Query: 341 KIAGLTNRLEKKTTPIEQEVQHFMRLISMWALTLGAICFLLALYIGYNWLNACVYVIGII 400
+I L + ++ PI++ + + I F++ L +G +++ A + ++
Sbjct: 183 QIVRLVRQAQQSKAPIQRLADKVAGYFVPVVIAIALITFVIWLILGADFVFALEVAVTVL 242
Query: 401 VANVPEGL-LATLTVSLTLTAKRLASKNCI-VRRLQTVETLGSIRTICTDKTGTLTQNKM 458
+ P L LAT TV A LA+KN + ++ +E +I T+ DKTGTLTQ K
Sbjct: 243 IIACPCALGLATPTV--IAVATGLAAKNGVLIKDGDALERAANIDTVVFDKTGTLTQGKP 300
Query: 459 TVLH 462
TV
Sbjct: 301 TVTD 304
>gnl|CDD|222006 pfam13246, Hydrolase_like2, Putative hydrolase of sodium-potassium
ATPase alpha subunit. This is a putative hydrolase of
the sodium-potassium ATPase alpha subunit.
Length = 91
Score = 91.5 bits (228), Expect = 3e-22
Identities = 35/94 (37%), Positives = 54/94 (57%), Gaps = 4/94 (4%)
Query: 497 CLCSKAEFEPNQDNIPMRERKASGDATEVGILHFIQPRIKSIQDVRNTFPKVTEVPFNSL 556
LC+ A+F N++ + GD TE +L F + ++++R +P+V E+PFNS
Sbjct: 1 ALCNDAKFGENEEK---NGGEIIGDPTESALLVFAEKLGIDVEELRARYPRVAEIPFNSE 57
Query: 557 NKFHLTVHFSPLN-KYFLLMKGAPEVIMERCTTM 589
K TVH + Y L +KGAPE I+ERC+T+
Sbjct: 58 RKRMSTVHKLEDDDGYRLFVKGAPERILERCSTI 91
>gnl|CDD|182635 PRK10671, copA, copper exporting ATPase; Provisional.
Length = 834
Score = 94.8 bits (236), Expect = 8e-20
Identities = 63/196 (32%), Positives = 93/196 (47%), Gaps = 44/196 (22%)
Query: 653 RLIGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHILSETSSDDNV 712
+ L+++ DP R A+ HKAG R++M+TGD+P TA AIA + I D V
Sbjct: 640 KAAALLAIRDPLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEAGI-------DEV 692
Query: 713 FTGTDLRKITDEELKDILETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGDGVNDAPA 772
G L D + +++L QS VA+ GDG+NDAPA
Sbjct: 693 IAGV---------LPD----------GKAEAIKRL------QSQGRQVAMVGDGINDAPA 727
Query: 773 LKKADIGIAMGITGSEVSKQTADMILMDDNFASIVLGIEEGRLIFDNLKKSIAYILASNI 832
L +AD+GIAMG GS+V+ +TA + LM + + + R N+K++
Sbjct: 728 LAQADVGIAMG-GGSDVAIETAAITLMRHSLMGVADALAISRATLRNMKQN--------- 777
Query: 833 PEILPFLFYIFLGIPL 848
+L Y LGIP+
Sbjct: 778 --LLGAFIYNSLGIPI 791
Score = 36.3 bits (84), Expect = 0.082
Identities = 66/265 (24%), Positives = 108/265 (40%), Gaps = 38/265 (14%)
Query: 224 RKSSHITESFAKMIPTRATVIRNGSVKEIDSAGLVRGDIVLLKIGDKVPADIRLIEIQDL 283
++SS E + P A V+ + K + A + G ++ L GD+VP D + + +
Sbjct: 308 QRSSKALEKLLDLTPPTARVVTDEGEKSVPLADVQPGMLLRLTTGDRVPVDGEITQGEAW 367
Query: 284 KAENSSLTGEVEPVTCTLGATNSFAVESRNLVFFSTNLVSGSGKGVVILT----GSNTVM 339
E + LTGE P G + V T + GS V+ GS+T +
Sbjct: 368 LDE-AMLTGEPIPQQKGEGDS----------VHAGTVVQDGS----VLFRASAVGSHTTL 412
Query: 340 GKIAGLTNRLEKKTTPIEQEVQH----FMRLISMWALTLGAICFLL--ALYIGYNWLNAC 393
+I + + + I Q F+ ++ + AL AI + A I Y
Sbjct: 413 SRIIRMVRQAQSSKPEIGQLADKISAVFVPVVVVIALVSAAIWYFFGPAPQIVY----TL 468
Query: 394 VYVIGIIVANVPEGL-LATLTVSLTLTAKRLASKNCIVRRLQTVETLGSIRTICTDKTGT 452
V +++ P L LAT +S+ R A +VR ++ ++ T+ DKTGT
Sbjct: 469 VIATTVLIIACPCALGLAT-PMSIISGVGRAAEFGVLVRDADALQRASTLDTLVFDKTGT 527
Query: 453 LTQNKMTVLHLSFNREIYHVKNGVD 477
LT+ K V+ + NGVD
Sbjct: 528 LTEGKPQVVAV-------KTFNGVD 545
>gnl|CDD|184448 PRK14010, PRK14010, potassium-transporting ATPase subunit B;
Provisional.
Length = 673
Score = 94.0 bits (233), Expect = 1e-19
Identities = 133/601 (22%), Positives = 241/601 (40%), Gaps = 130/601 (21%)
Query: 246 NGSVKEIDSAGLVRGDIVLLKIGDKVPADIRLIEIQDLKAENSSLTGEVEPVTCTLGATN 305
+GS + ID++ L +G IV + G+++P D ++I+ + S++TGE PV G
Sbjct: 112 DGSYEMIDASDLKKGHIVRVATGEQIPNDGKVIK-GLATVDESAITGESAPVIKESGG-- 168
Query: 306 SFAVESRNLVFFSTNLVSGSGKGVVILTGSNTVMGKIAGLTNRLEKKTTPIEQEVQHFMR 365
+ V T++ S + + ++ + K+ GL +K TP E+ F
Sbjct: 169 -----DFDNVIGGTSVASDWLEVEITSEPGHSFLDKMIGLVEGATRKKTP--NEIALFTL 221
Query: 366 LISMWALTLGAIC--FLLALYIGYNWLNACVYVIGIIVANVPEGLLATLTVSLTLTAKRL 423
L+++ + L I + LA ++ +N + +I + V +P + L+ R+
Sbjct: 222 LMTLTIIFLVVILTMYPLAKFLNFNL--SIAMLIALAVCLIPTTIGGLLSAIGIAGMDRV 279
Query: 424 ASKNCIVRRLQTVETLGSIRTICTDKTGTLTQ-NKMTVLHLSFNREIYHVKNGVDVDIQN 482
N + + ++VET G + + DKTGT+T N+M +
Sbjct: 280 TQFNILAKSGRSVETCGDVNVLILDKTGTITYGNRMADAFIPV----------------- 322
Query: 483 FETNTTYKTLVRAACLCSKAEFEPNQDNIPMRERKASGDATEVGILHFIQPRIKSIQDVR 542
+++++ LV+AA S A+ P +I + I Q+V
Sbjct: 323 --KSSSFERLVKAAYESSIADDTPEGRSIVKLAY---------------KQHIDLPQEVG 365
Query: 543 NTFPKVTEVPFNSLNKFHLTVHFSPLNKYFLLMKGAPEVIMERCTTMMAESDKEAFLTAE 602
P E + V F+ Y KGAP +++R KEA
Sbjct: 366 EYIPFTAETRMSG-------VKFTTREVY----KGAPNSMVKRV--------KEA--GGH 404
Query: 603 KKYELEDKIKLFASKGERVLAFADLHLGQNNFPVNFKFSTDPMNFPSSGFRLIGLISLYD 662
+L+ +K + KG L ++N ++G+I L D
Sbjct: 405 IPVDLDALVKGVSKKGGTPLVVL-----EDNE-------------------ILGVIYLKD 440
Query: 663 PPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHILSETSSDDNVFTGTDLRKIT 722
+ + + + GI +M TGD+ TA IA
Sbjct: 441 VIKDGLVERFRELREMGIETVMCTGDNELTAATIA------------------------- 475
Query: 723 DEELKDILETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGDGVNDAPALKKADIGIAM 782
E + A P K+ ++ Q+ IVA+TGDG NDAPAL +A++G+AM
Sbjct: 476 -------KEAGVDRFVAECKPEDKINVIREEQAKGHIVAMTGDGTNDAPALAEANVGLAM 528
Query: 783 GITGSEVSKQTADMILMDDNFASIVLGIEEGRLIFDNLKKSIAYILASNIPE---ILPFL 839
+G+ +K+ A++I +D N ++ + G+ + + +A++I + ILP +
Sbjct: 529 N-SGTMSAKEAANLIDLDSNPTKLMEVVLIGKQLLMTRGSLTTFSIANDIAKYFAILPAM 587
Query: 840 F 840
F
Sbjct: 588 F 588
>gnl|CDD|233509 TIGR01652, ATPase-Plipid, phospholipid-translocating P-type ATPase,
flippase. This model describes the P-type ATPase
responsible for transporting phospholipids from one
leaflet of bilayer membranes to the other. These ATPases
are found only in eukaryotes.
Length = 1057
Score = 90.5 bits (225), Expect = 2e-18
Identities = 148/736 (20%), Positives = 241/736 (32%), Gaps = 209/736 (28%)
Query: 239 TRATVIRNGSV-KEIDSAGLVRGDIVLLKIGDKVPADIRLIEIQDLKAENSSLTGEVEPV 297
V+ EI L GDIV +K +++PAD+ L L + G
Sbjct: 85 RLTEVLEGHGQFVEIPWKDLRVGDIVKVKKDERIPADLLL-----LSSSEPD--GVCYVE 137
Query: 298 TCTL-GATN----------------------SFAVES----RNLVFFSTNLV-------- 322
T L G TN S +E +L F N+
Sbjct: 138 TANLDGETNLKLRQALEETQKMLDEDDIKNFSGEIECEQPNASLYSFQGNMTINGDRQYP 197
Query: 323 ---------------SGSGKGVVILTGSNTVMGKIAGLTNRLEKKTTPIEQEVQH----- 362
+ GVV+ TG +T + + A K + +E+E+
Sbjct: 198 LSPDNILLRGCTLRNTDWVIGVVVYTGHDTKLMRNATQAP---SKRSRLEKELNFLIIIL 254
Query: 363 FMRLISMWALTLGAIC------------FLLALYIGYNWLNACVYVI--GIIVAN--VPE 406
F L + L ++ N + +I+ + +P
Sbjct: 255 FCLLFVL-CLISSVGAGIWNDAHGKDLWYIRLDVSERNAAANGFFSFLTFLILFSSLIPI 313
Query: 407 GLLATLTVSLTLTAKRLASKN----------CIVRRLQTVETLGSIRTICTDKTGTLTQN 456
L +L + ++ A + S VR E LG + I +DKTGTLTQN
Sbjct: 314 SLYVSLELVKSVQAYFINSDLQMYHEKTDTPASVRTSNLNEELGQVEYIFSDKTGTLTQN 373
Query: 457 KMTVLHLSFNREIY-----HVKNGVDVDIQNFETNTTY---------------------- 489
M S Y +K+G+ + ++ N
Sbjct: 374 IMEFKKCSIAGVSYGDGFTEIKDGIRERLGSYVENENSMLVESKGFTFVDPRLVDLLKTN 433
Query: 490 -------KTLVRAACLCSKAEFEPNQDNIPMRERKA-SGD-------ATEVGILHFIQPR 534
A LC E N D +A S D A +VG + F +
Sbjct: 434 KPNAKRINEFFLALALCHTVVPEFNDDGPEEITYQAASPDEAALVKAARDVGFVFFERTP 493
Query: 535 -----IKSIQDVRNTFPKVTEVPFNSLNKFHLTVHFSPLNKYFLLMKGAPEVIMERCTTM 589
+ + + + + FNS K + +P + LL KGA VI +R
Sbjct: 494 KSISLLIEMHGETKEYEILNVLEFNSDRKRMSVIVRNPDGRIKLLCKGADTVIFKRL--- 550
Query: 590 MAESDKEAFLTAEKKYELEDKIKLFASKGERVLAFADLHLGQNN---FPVNFKFSTDPM- 645
S + E K LE+ +AS+G R L A L + + + ++ +
Sbjct: 551 ---SSGGNQVNEETKEHLEN----YASEGLRTLCIAYRELSEEEYEEWNEEYNEASTALT 603
Query: 646 ----------NFPSSGFRLIGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKA 695
L+G ++ D + VP+ I+ +AGI++ ++TGD TA
Sbjct: 604 DREEKLDVVAESIEKDLILLGATAIEDKLQEGVPETIELLRQAGIKIWVLTGDKVETAIN 663
Query: 696 IAIKC---------HILSETSSDDNVFTGTDLRKI---TDEELKDILETN--------KE 735
I C +++ S D ++ T EE ++ ++ K
Sbjct: 664 IGYSCRLLSRNMEQIVITSDSLDATRSVEAAIKFGLEGTSEEFNNLGDSGNVALVIDGKS 723
Query: 736 LVFA----------------------RTSPLQKLRIVELYQ-SLDEIVAVTGDGVNDAPA 772
L +A R SP QK +V L + S + GDG ND
Sbjct: 724 LGYALDEELEKEFLQLALKCKAVICCRVSPSQKADVVRLVKKSTGKTTLAIGDGANDVSM 783
Query: 773 LKKADIGIAMGITGSE 788
+++AD+G+ GI+G E
Sbjct: 784 IQEADVGV--GISGKE 797
>gnl|CDD|234905 PRK01122, PRK01122, potassium-transporting ATPase subunit B;
Provisional.
Length = 679
Score = 89.9 bits (224), Expect = 3e-18
Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 33/150 (22%)
Query: 653 RLIGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHILSETSSDDNV 712
R++G+I L D +P + + K GI+ +M+TGD+P TA AIA +E DD
Sbjct: 435 RVLGVIYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIA------AEAGVDD-- 486
Query: 713 FTGTDLRKITDEELKDILETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGDGVNDAPA 772
A +P KL ++ Q+ +VA+TGDG NDAPA
Sbjct: 487 ------------------------FLAEATPEDKLALIRQEQAEGRLVAMTGDGTNDAPA 522
Query: 773 LKKADIGIAMGITGSEVSKQTADMILMDDN 802
L +AD+G+AM +G++ +K+ +M+ +D N
Sbjct: 523 LAQADVGVAMN-SGTQAAKEAGNMVDLDSN 551
Score = 42.1 bits (100), Expect = 0.002
Identities = 80/357 (22%), Positives = 139/357 (38%), Gaps = 87/357 (24%)
Query: 177 WFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGMFSFYQE------------- 223
G++L+ + + + + + L T +F+ + E
Sbjct: 40 EVGSILTTILTIAP---LLFQSGGPAGFNLAITLWLWFTVLFANFAEALAEGRGKAQADS 96
Query: 224 -RKSSHITESFAKMIPTRATVIRNGSVKEIDSAGLVRGDIVLLKIGDKVPADIRLIEIQD 282
R + ++FA+ + G+ +E+ + L +GDIVL++ G+ +PAD +IE
Sbjct: 97 LRGAK--KDTFARKL------REPGAAEEVPATELRKGDIVLVEAGEIIPADGEVIE--G 146
Query: 283 LKAEN-SSLTGEVEPVTCTLGATNSFAVESRNLVFFSTNLVSGSGKGVVILTGSN---TV 338
+ + + S++TGE PV G + V T ++S +VI +N +
Sbjct: 147 VASVDESAITGESAPVIRESGGD-------FSSVTGGTRVLSDW---IVIRITANPGESF 196
Query: 339 MGKIAGLTNRLEKKTTPIEQEVQHFMRLISMWALTLGAICFLLA---LYIGYNWLNACVY 395
+ ++ L +++ TP E+ + L LT I FLL L + +
Sbjct: 197 LDRMIALVEGAKRQKTP--NEIALTILLA---GLT---IIFLLVVATLPPFAAYSGGALS 248
Query: 396 VIGIIVANVPEGLLATL---TVSLTLTA------KRLASKNCIVRRLQTVETLGSIRTIC 446
+ ++VA LL L T+ L+A R+ N I + VE G + T+
Sbjct: 249 IT-VLVA-----LLVCLIPTTIGGLLSAIGIAGMDRVLQANVIATSGRAVEAAGDVDTLL 302
Query: 447 TDKTGTLT-QNKMTVLHLSFNREIYHVKNGVDVDIQNFETNTTYKTLVRAACLCSKA 502
DKTGT+T N+ E V GV + L AA L S A
Sbjct: 303 LDKTGTITLGNRQAS-------EFLPV-PGVTE-----------EELADAAQLSSLA 340
>gnl|CDD|236827 PRK11033, zntA, zinc/cadmium/mercury/lead-transporting ATPase;
Provisional.
Length = 741
Score = 87.0 bits (216), Expect = 2e-17
Identities = 70/220 (31%), Positives = 96/220 (43%), Gaps = 57/220 (25%)
Query: 653 RLIGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHILSETSSDDNV 712
++GLI+L D R AI GI+ +M+TGD+P A AIA +
Sbjct: 558 DVLGLIALQDTLRADARQAISELKALGIKGVMLTGDNPRAAAAIAGE------------- 604
Query: 713 FTGTDLRKITDEELKDILETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGDGVNDAPA 772
G D R A P K++ V +A+ GDG+NDAPA
Sbjct: 605 -LGIDFR-------------------AGLLPEDKVKAVTELNQ-HAPLAMVGDGINDAPA 643
Query: 773 LKKADIGIAMGITGSEVSKQTADMILMDDNFASIVLGIEEGRLIFDNLKKSIAYILASNI 832
+K A IGIAMG +G++V+ +TAD L + + IE R N++++I L
Sbjct: 644 MKAASIGIAMG-SGTDVALETADAALTHNRLRGLAQMIELSRATHANIRQNITIALG--- 699
Query: 833 PEILPFLFYIFLGIPLPVSTVTVLCIDLG-TDMWPAVSLA 871
L IFL VT L LG T +W AV LA
Sbjct: 700 ------LKAIFL--------VTTL---LGITGLWLAV-LA 721
Score = 41.5 bits (98), Expect = 0.002
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 236 MIPTRATVIRNGSVKEIDSAGLVRGDIVLLKIGDKVPADIRLIEIQDLKAENSSLTGEVE 295
++P AT +R+G +E+ A L GD++ + G ++PAD +L+ + S+LTGE
Sbjct: 240 LVPETATRLRDGEREEVAIADLRPGDVIEVAAGGRLPADGKLLS-PFASFDESALTGESI 298
Query: 296 PV 297
PV
Sbjct: 299 PV 300
Score = 38.4 bits (90), Expect = 0.018
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 437 ETLGSIRTICTDKTGTLTQNKMTV 460
E LG + T+ DKTGTLT+ K V
Sbjct: 431 EQLGRVTTVAFDKTGTLTEGKPQV 454
>gnl|CDD|216063 pfam00689, Cation_ATPase_C, Cation transporting ATPase, C-terminus.
Members of this families are involved in Na+/K+, H+/K+,
Ca++ and Mg++ transport. This family represents 5
transmembrane helices.
Length = 175
Score = 76.5 bits (189), Expect = 6e-16
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 847 PLPVSTVTVLCIDLGTDMWPAVSLAYEKPESNIMSREPRNPRTDHLVGRKLVTYAYFHLG 906
PLP++ + +L I+L TD PA++L +E PE ++M R PR P + L RKL+ G
Sbjct: 1 PLPLTPIQILWINLVTDGLPALALGFEPPEPDLMKRPPRKP-KEPLFSRKLLRRILL-QG 58
Query: 907 ILETLAGFLTYFHVMYDAGWDPMDL 931
+L + L +F + G L
Sbjct: 59 LLIAIVTLLVFFLGLLGFGISESGL 83
>gnl|CDD|216069 pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase. This
family is structurally different from the alpha/beta
hydrolase family (pfam00561). This family includes
L-2-haloacid dehalogenase, epoxide hydrolases and
phosphatases. The structure of the family consists of
two domains. One is an inserted four helix bundle, which
is the least well conserved region of the alignment,
between residues 16 and 96 of Pseudomonas sp.
(S)-2-haloacid dehalogenase 1. The rest of the fold is
composed of the core alpha/beta domain. Those members
with the characteristic DxD triad at the N-terminus are
probably phosphatidylglycerolphosphate (PGP)
phosphatases involved in cardiolipin biosynthesis in the
mitochondria.
Length = 187
Score = 75.0 bits (184), Expect = 3e-15
Identities = 44/208 (21%), Positives = 71/208 (34%), Gaps = 36/208 (17%)
Query: 574 LMKGAPEVIMERCTTMMAESDKEAFLTAEKKY----ELEDKIKLFASKGERVLAFADLHL 629
L G P V A + A + A + E+ ++ + + L
Sbjct: 12 LTDGEPVVPEAEALLEAAAALGVAIVIAAGENLTKEGREELVRRLLLRALAGEELLEELL 71
Query: 630 GQNNFPVNFKFSTDPMNFPSSGFRLIGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDH 689
V ++GLI+L DP P +A+ +AGI++ ++TGD+
Sbjct: 72 RAGATVVAVLD-----------LVVLGLIALTDPLYPGAREALKELKEAGIKLAILTGDN 120
Query: 690 PCTAKAIAIKCHILSETSSDDNVFTGTDLRKITDEELKDILETNKELVFARTSPLQKLRI 749
TA AIA + D + + + + + P
Sbjct: 121 RLTANAIARLLGL------FDALVSA---------------DLYGLVGVGKPDPKIFELA 159
Query: 750 VELYQSLDEIVAVTGDGVNDAPALKKAD 777
+E E V + GDGVND PA K A
Sbjct: 160 LEELGVKPEEVLMVGDGVNDIPAAKAAG 187
Score = 31.1 bits (70), Expect = 1.9
Identities = 17/123 (13%), Positives = 34/123 (27%), Gaps = 11/123 (8%)
Query: 442 IRTICTDKTGTLTQNKMTVLH-LSFNREIYHVKNGVDVDIQNFETNTTYKTLVRAACLCS 500
I+ + D GTLT + V + + + + T + LVR
Sbjct: 1 IKAVVFDLDGTLTDGEPVVPEAEALLEAAAALGVAIVIAAGENLTKEGREELVRRL---- 56
Query: 501 KAEFEPNQDNIPMRERKASGDATEVGILHFIQPRIKSIQDVRNTFPKVTEVPFNSLNKFH 560
+ + +A V L + + +P E L +
Sbjct: 57 -LLRALAGEELLEELLRAGATVVAVLDLVVLGLIALTDPL----YPGAREA-LKELKEAG 110
Query: 561 LTV 563
+ +
Sbjct: 111 IKL 113
>gnl|CDD|214842 smart00831, Cation_ATPase_N, Cation transporter/ATPase, N-terminus.
This entry represents the conserved N-terminal region
found in several classes of cation-transporting P-type
ATPases, including those that transport H+, Na+, Ca2+,
Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange
P-ATPases, this domain is found in the catalytic alpha
chain. In gastric H+/K+-ATPases, this domain undergoes
reversible sequential phosphorylation inducing
conformational changes that may be important for
regulating the function of these ATPases.
Length = 75
Score = 68.8 bits (169), Expect = 2e-14
Identities = 25/75 (33%), Positives = 38/75 (50%)
Query: 112 DIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYVLVGYIFRG 171
++D H + LEE+ L T ++GLS E RRLE+ GPN LP + + + +
Sbjct: 1 ELDWHALSLEEVLERLQTDLEKGLSSEEAARRLERYGPNELPPPKKTSPLLRFLRQFHNP 60
Query: 172 FSALLWFGALLSFLA 186
+L A+LS L
Sbjct: 61 LIYILLAAAVLSALL 75
>gnl|CDD|201397 pfam00690, Cation_ATPase_N, Cation transporter/ATPase, N-terminus.
Members of this families are involved in Na+/K+, H+/K+,
Ca++ and Mg++ transport.
Length = 69
Score = 61.8 bits (151), Expect = 4e-12
Identities = 22/69 (31%), Positives = 37/69 (53%)
Query: 115 EHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYVLVGYIFRGFSA 174
H + +EE+ + L T ++GL+E E + RLEK GPN LP+K + + +
Sbjct: 1 WHTLSVEEVLARLGTDLEKGLTEAEAEERLEKYGPNELPEKKPKSLWKIFLRQFKDPLVI 60
Query: 175 LLWFGALLS 183
+L A++S
Sbjct: 61 ILLIAAIVS 69
>gnl|CDD|215623 PLN03190, PLN03190, aminophospholipid translocase; Provisional.
Length = 1178
Score = 54.9 bits (132), Expect = 2e-07
Identities = 46/188 (24%), Positives = 76/188 (40%), Gaps = 53/188 (28%)
Query: 652 FRLIGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHILS------- 704
++G ++ D + VP+AI++ AGI+V ++TGD TA +I +L+
Sbjct: 715 LTILGASAIEDKLQQGVPEAIESLRTAGIKVWVLTGDKQETAISIGYSSKLLTNKMTQII 774
Query: 705 ---------------------------------ETSSDDN------VFTGTDLRKITDEE 725
SS + GT L + D E
Sbjct: 775 INSNSKESCRKSLEDALVMSKKLTTVSGISQNTGGSSAAASDPVALIIDGTSLVYVLDSE 834
Query: 726 LKDIL----ETNKELVFARTSPLQKLRIVELYQS-LDEIVAVTGDGVNDAPALKKADIGI 780
L++ L ++ R +PLQK IV L ++ ++ GDG ND ++ AD+G+
Sbjct: 835 LEEQLFQLASKCSVVLCCRVAPLQKAGIVALVKNRTSDMTLAIGDGANDVSMIQMADVGV 894
Query: 781 AMGITGSE 788
GI+G E
Sbjct: 895 --GISGQE 900
Score = 37.6 bits (87), Expect = 0.037
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 431 RRLQTVETLGSIRTICTDKTGTLTQNKM 458
R L E LG I+ + +DKTGTLT+NKM
Sbjct: 442 RALNINEDLGQIKYVFSDKTGTLTENKM 469
>gnl|CDD|119389 cd01427, HAD_like, Haloacid dehalogenase-like hydrolases. The
haloacid dehalogenase-like (HAD) superfamily includes
L-2-haloacid dehalogenase, epoxide hydrolase,
phosphoserine phosphatase, phosphomannomutase,
phosphoglycolate phosphatase, P-type ATPase, and many
others, all of which use a nucleophilic aspartate in
their phosphoryl transfer reaction. All members possess
a highly conserved alpha/beta core domain, and many also
possess a small cap domain, the fold and function of
which is variable. Members of this superfamily are
sometimes referred to as belonging to the DDDD
superfamily of phosphohydrolases.
Length = 139
Score = 50.1 bits (120), Expect = 3e-07
Identities = 22/121 (18%), Positives = 46/121 (38%), Gaps = 8/121 (6%)
Query: 664 PRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHILSETSSDDNVFTGTDLRKITD 723
P V +A+ + GI++ + T + + + D V T
Sbjct: 25 LYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGLDDY---FDPVITSNGAAIYYP 81
Query: 724 EELKDILETNKELVFARTSPLQK-LRIVELYQSLDEIVAVTGDGVNDAPALKKA-DIGIA 781
+E + ++ L L+++ + +E++ V GD +ND K A +G+A
Sbjct: 82 KEGLFLGGGPFDIGKPNPDKLLAALKLLGVD--PEEVLMV-GDSLNDIEMAKAAGGLGVA 138
Query: 782 M 782
+
Sbjct: 139 V 139
>gnl|CDD|223634 COG0560, SerB, Phosphoserine phosphatase [Amino acid transport and
metabolism].
Length = 212
Score = 50.0 bits (120), Expect = 1e-06
Identities = 34/127 (26%), Positives = 51/127 (40%), Gaps = 23/127 (18%)
Query: 661 YDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHILSETS----SDDNVFTGT 716
+ P + + A AG +V++++G + IA + I + DD TG
Sbjct: 75 FLRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDYVVANELEIDDGKLTGR 134
Query: 717 DLRKITDEELKDILETNKELVFARTSPLQKLRIV--ELYQSLDEIVAVTGDGVNDAPALK 774
+ I D E K + LR + EL L+E VA GD ND P L+
Sbjct: 135 VVGPICDGEGKA----------------KALRELAAELGIPLEETVAY-GDSANDLPMLE 177
Query: 775 KADIGIA 781
A + IA
Sbjct: 178 AAGLPIA 184
>gnl|CDD|232927 TIGR00338, serB, phosphoserine phosphatase SerB. Phosphoserine
phosphatase catalyzes the reaction 3-phospho-serine +
H2O = L-serine + phosphate. It catalyzes the last of
three steps in the biosynthesis of serine from
D-3-phosphoglycerate. Note that this enzyme acts on free
phosphoserine, not on phosphoserine residues of
phosphoproteins [Amino acid biosynthesis, Serine
family].
Length = 219
Score = 47.7 bits (114), Expect = 8e-06
Identities = 32/150 (21%), Positives = 55/150 (36%), Gaps = 23/150 (15%)
Query: 663 PPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHI----LSETSSDDNVFTGTDL 718
P + + + G +V +++G A+ + K + + +D TG
Sbjct: 85 PLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDAAFANRLEVEDGKLTGLVE 144
Query: 719 RKITDEELKDILETNKELVFARTSPLQKLRIVELYQ-SLDEIVAVTGDGVNDAPALKKAD 777
I D K +T L ++ S + VAV GDG ND +K A
Sbjct: 145 GPIVDASYK-----------GKT----LLILLRKEGISPENTVAV-GDGANDLSMIKAAG 188
Query: 778 IGIAMGITGSEVSKQTADMILMDDNFASIV 807
+GIA +Q AD+ + + I+
Sbjct: 189 LGIAFN--AKPKLQQKADICINKKDLTDIL 216
>gnl|CDD|226572 COG4087, COG4087, Soluble P-type ATPase [General function
prediction only].
Length = 152
Score = 45.2 bits (107), Expect = 2e-05
Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Query: 711 NVFTGTDLRKITDEELKDILETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGDGVNDA 770
+++ + RK + +L + + E VFA P K +I+ + E V + G+G ND
Sbjct: 47 DIYIASGDRKGSLVQLAEFVGIPVERVFAGADPEMKAKIIRELKKRYEKVVMVGNGANDI 106
Query: 771 PALKKADIGIAMGITGSEVSKQ---TADMILMDDNFASIVL 808
AL++AD+GI I V ++ TAD++L + +L
Sbjct: 107 LALREADLGI-CTIQQEGVPERLLLTADVVLKEIAEILDLL 146
>gnl|CDD|232824 TIGR00099, Cof-subfamily, Cof subfamily of IIB subfamily of
haloacid dehalogenase superfamily. This subfamily of
sequences falls within the Class-IIB subfamily
(TIGR01484) of the Haloacid Dehalogenase superfamily of
aspartate-nucleophile hydrolases. The use of the name
"Cof" as an identifier here is arbitrary and refers to
the E. coli Cof protein. This subfamily is notable for
the large number of recent paralogs in many species.
Listeria, for instance, has 12, Clostridium, Lactococcus
and Streptococcus pneumoniae have 8 each, Enterococcus
and Salmonella have 7 each, and Bacillus subtilus,
Mycoplasma, Staphylococcus and E. coli have 6 each. This
high degree of gene duplication is limited to the gamma
proteobacteria and low-GC gram positive lineages. The
profusion of genes in this subfamily is not coupled with
a high degree of divergence, so it is impossible to
determine an accurate phylogeny at the equivalog level.
Considering the relationship of this subfamily to the
other known members of the HAD-IIB subfamily
(TIGR01484), sucrose and trehalose phosphatases and
phosphomannomutase, it seems a reasonable hypothesis
that these enzymes act on phosphorylated sugars.
Possibly the diversification of genes in this subfamily
represents the diverse sugars and polysaccharides that
various bacteria find in their biological niches. The
members of this subfamily are restricted almost
exclusively to bacteria (one sequences from S. pombe
scores above trusted, while another is between trusted
and noise). It is notable that no archaea are found in
this group, the closest relations to the archaea found
here being two Deinococcus sequences [Unknown function,
Enzymes of unknown specificity].
Length = 256
Score = 46.5 bits (111), Expect = 3e-05
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 748 RIVELYQ-SLDEIVAVTGDGVNDAPALKKADIGIAMGITGSEVSKQTADMI 797
+ E SL++++A GDG+ND L+ A G+AMG E K AD +
Sbjct: 195 SLAEALGISLEDVIAF-GDGMNDIEMLEAAGYGVAMG-NADEELKALADYV 243
>gnl|CDD|223635 COG0561, Cof, Predicted hydrolases of the HAD superfamily [General
function prediction only].
Length = 264
Score = 43.9 bits (104), Expect = 2e-04
Identities = 26/128 (20%), Positives = 52/128 (40%), Gaps = 18/128 (14%)
Query: 705 ETSSDDNVFTGTDLRKITDEELKDILETNKELVFARTSPLQKL---------------RI 749
D+ + +I +E ++ + + +L +S R+
Sbjct: 138 AELEDNKIIALDKDHEILEELVEALRKRFPDLGLTVSSSGPISLDITPKGVSKGYALQRL 197
Query: 750 VELYQ-SLDEIVAVTGDGVNDAPALKKADIGIAMGITGSEVSKQTADMILMDDNFASIVL 808
+L L+E++A GD ND L+ A +G+AMG E K+ AD + ++ +
Sbjct: 198 AKLLGIKLEEVIAF-GDSTNDIEMLEVAGLGVAMG-NADEELKELADYVTTSNDEDGVAE 255
Query: 809 GIEEGRLI 816
+E+ L+
Sbjct: 256 ALEKLLLL 263
>gnl|CDD|219777 pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase. This
family contains haloacid dehalogenase-like hydrolase
enzymes.
Length = 254
Score = 41.5 bits (98), Expect = 0.001
Identities = 31/166 (18%), Positives = 56/166 (33%), Gaps = 36/166 (21%)
Query: 664 PRPAVPDAIDACHKAGIRVIMVTGDH-------PCTAKAIAIKCHILSETSSDDNVFTGT 716
+ V + I+ + + +++ T D D +
Sbjct: 80 SKEDVKEIIEYLKENNLSILLYTDDGAYILNDVSEKIVREERYVKSFVLVIDDFELLEDE 139
Query: 717 DLRKI----TDEELKDILET-----NKELVFARTSP---------------LQKLRIVEL 752
D+ KI E+L ++ + + + P L+ L +
Sbjct: 140 DINKILIVTDPEDLDELEKELKELFGSLITITSSGPGYLEIMPKGVSKGTALKAL--AKH 197
Query: 753 YQ-SLDEIVAVTGDGVNDAPALKKADIGIAMGITGSEVSKQTADMI 797
L+E++A GDG ND L+ A +G+AMG S K AD +
Sbjct: 198 LGIDLEEVIAF-GDGENDIEMLELAGLGVAMG-NASPEVKAAADYV 241
>gnl|CDD|234176 TIGR03351, PhnX-like, phosphonatase-like hydrolase. This clade of
sequences are the closest homologs to the PhnX enzyme,
phosphonoacetaldehyde (Pald) hydrolase (phosphonatase,
TIGR01422). This phosphonatase-like enzyme and PhnX
itself are members of the haloacid dehalogenase (HAD)
superfamily (pfam00702) having a a number of distinctive
features that set them apart from typical HAD enzymes.
The typical HAD N-terminal motif DxDx(T/V) here is DxAGT
and the usual conserved lysine prior to the C-terminal
motif is instead an arginine. Also distinctive of
phosphonatase, and particular to its bi-catalytic
mechanism is a conserved lysine in the variable "cap"
domain. This lysine forms a Schiff base with the
aldehyde of phosphonoacetaldehyde, providing, through
the resulting positive charge, a polarization of the C-P
bond necesary for cleavage as well as a route to the
initial product of cleavage, an ene-amine. The
conservation of these elements in this
phosphonatase-like enzyme suggests that the substrate is
also, like Pald, a 2-oxo-ethylphosphonate. Despite this,
the genomic context of members of this family are quite
distinct from PhnX, which is almost invariably
associated with the 2-aminoethylphosphonate transaminase
PhnW (TIGR02326), the source of the substrate Pald.
Members of this clade are never associated with PhnW,
but rather associate with families of FAD-dependent
oxidoreductases related to deaminating amino acid
oxidases (pfam01266) as well as zinc-dependent
dehydrogenases (pfam00107). Notably, family members from
Arthrobacter aurescens TC1 and Nocardia farcinica IFM
10152 are adjacent to the PhnCDE ABC cassette
phosphonates transporter (GenProp0236) typically found
in association with the phosphonates C-P lyase system
(GenProp0232). These observations suggest two
possibilities. First, the substrate for this enzyme
family is also Pald, the non-association with PhnW not
withstanding. Alternatively, the substrate is something
very closely related such as
hydroxyphosphonoacetaldehyde (Hpald). Hpald could come
from oxidative deamination of
1-hydroxy-2-aminoethylphosphonate (HAEP) by the
associated oxidase. HAEP would not be a substrate for
PhnW due to its high specificity for AEP. HAEP has been
shown to be a constituent of the sphingophosphonolipid
of Bacteriovorax stolpii, and presumably has other
natural sources. If Hpald is the substrate, the product
would be glycoaldehyde (hydroxyacetaldehyde), and the
associated alcohol dehydrogenase may serve to convert
this to glycol.
Length = 220
Score = 39.0 bits (91), Expect = 0.005
Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 30/137 (21%)
Query: 657 LISLYD--PPR--PAVPDAIDACHKAGIRVIMVTG-DHPCTAKAIAIKCHILSETSSDDN 711
L YD PP P +A + +GI+V + TG D TA+ +
Sbjct: 77 LAEAYDDGPPVALPGAEEAFRSLRSSGIKVALTTGFDRD-TAERL--------------- 120
Query: 712 VFTGTDLRKI--TDEELKDILETNKELVFARTSPLQKLRIVELYQSLD-EIVAVTGDGVN 768
L K+ T + D + ++ R +P LR +EL D + VAV GD N
Sbjct: 121 ------LEKLGWTVGDDVDAVVCPSDVAAGRPAPDLILRAMELTGVQDVQSVAVAGDTPN 174
Query: 769 DAPALKKADIGIAMGIT 785
D A A G +G+
Sbjct: 175 DLEAGINAGAGAVVGVL 191
>gnl|CDD|233435 TIGR01488, HAD-SF-IB, Haloacid Dehalogenase superfamily, subfamily
IB, phosphoserine phosphatase-like. This model
represents a subfamily of the Haloacid Dehalogenase
superfamily of aspartate-nucleophile hydrolases.
Subfamily IA, B, C and D are distinguished from the rest
of the superfamily by the presence of a variable domain
between the first and second conserved catalytic motifs.
In subfamilies IA and IB, this domain consists of an
alpha-helical bundle. It was necessary to model these
two subfamilies separately, breaking them at a an
apparent phylogenetic bifurcation, so that the resulting
model(s) are not so broadly defined that members of
subfamily III (which lack the variable domain) are
included. Subfamily IA includes the enzyme phosphoserine
phosphatase (TIGR00338) as well as three hypothetical
equivalogs. Many members of these hypothetical
equivalogs have been annotated as PSPase-like or
PSPase-family proteins. In particular, the hypothetical
equivalog which appears to be most closely related to
PSPase contains only Archaea (while TIGR00338 contains
only eukaryotes and bacteria) of which some are
annotated as PSPases. Although this is a reasonable
conjecture, none of these sequences has sufficient
evidence for this assignment. If such should be found,
this model should be retired while the PSPase model
should be broadened to include these sequences [Unknown
function, Enzymes of unknown specificity].
Length = 177
Score = 36.2 bits (84), Expect = 0.037
Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 29/124 (23%)
Query: 663 PPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIA----IKCHILSETSSDDN-VFTGTD 717
RP + I + GI ++V+G + +A I + DDN + TG
Sbjct: 73 ALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGIDDVFANRLEFDDNGLLTGPI 132
Query: 718 LRKITDEELKDILETNKELVFARTSPLQKLRIVELYQ-----SLDEIVAVTGDGVNDAPA 772
++ K ++++ +L +I+AV GD VND P
Sbjct: 133 EGQV------------------NPEGECKGKVLKELLEESKITLKKIIAV-GDSVNDLPM 173
Query: 773 LKKA 776
LK A
Sbjct: 174 LKLA 177
>gnl|CDD|182523 PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase;
Provisional.
Length = 272
Score = 35.8 bits (83), Expect = 0.079
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 755 SLDEIVAVTGDGVNDAPALKKADIGIAMGITGSEVSKQTADMILMDDNFASI 806
S+ +VA GD ND L+ A +G+AMG V K AD+++ D+ SI
Sbjct: 214 SMKNVVAF-GDNFNDISMLEAAGLGVAMGNADDAV-KARADLVIGDNTTPSI 263
Score = 29.6 bits (67), Expect = 8.4
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 6/44 (13%)
Query: 652 FRLIGLI---SLYDPPRPAVPDAIDACHKA---GIRVIMVTGDH 689
+R+I L +L P + +P++++A +A G +VI+VTG H
Sbjct: 3 YRVIALDLDGTLLTPKKTILPESLEALARAREAGYKVIIVTGRH 46
>gnl|CDD|234910 PRK01158, PRK01158, phosphoglycolate phosphatase; Provisional.
Length = 230
Score = 35.3 bits (82), Expect = 0.083
Identities = 40/189 (21%), Positives = 63/189 (33%), Gaps = 65/189 (34%)
Query: 670 DAIDACHKA---GIRVIMVTGDHPC----TAKAIAIKCHILSE------TSSDDNVFTGT 716
A++A KA GI VI+ TG+ C AK I +++E D
Sbjct: 24 KAVEAIRKAEKLGIPVILATGNVLCFARAAAKLIGTSGPVIAENGGVISVGFDGKRIFLG 83
Query: 717 DLRKIT--DEELKDILETNK-------------ELVFARTSPLQKLR--------IVELY 753
D+ + ELK E+ RT P++++R +E+
Sbjct: 84 DIEECEKAYSELKKRFPEASTSLTKLDPDYRKTEVALRRTVPVEEVRELLEELGLDLEIV 143
Query: 754 QS---------------------------LDEIVAVTGDGVNDAPALKKADIGIAMGITG 786
S +E+ A+ GD ND + A G+A+
Sbjct: 144 DSGFAIHIKSPGVNKGTGLKKLAELMGIDPEEVAAI-GDSENDLEMFEVAGFGVAVA-NA 201
Query: 787 SEVSKQTAD 795
E K+ AD
Sbjct: 202 DEELKEAAD 210
>gnl|CDD|215479 PLN02887, PLN02887, hydrolase family protein.
Length = 580
Score = 36.4 bits (84), Expect = 0.085
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 746 KLRIVELYQSLDEIVAVTGDGVNDAPALKKADIGIAMGITGSEVSKQTADMI 797
K+ + L S DEI+A+ GDG ND L+ A +G+A+ G+E +K AD+I
Sbjct: 513 KMLLNHLGVSPDEIMAI-GDGENDIEMLQLASLGVALS-NGAEKTKAVADVI 562
>gnl|CDD|221729 pfam12710, HAD, haloacid dehalogenase-like hydrolase.
Length = 122
Score = 33.7 bits (77), Expect = 0.11
Identities = 21/125 (16%), Positives = 38/125 (30%), Gaps = 16/125 (12%)
Query: 650 SGFRLIGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHILSETSSD 709
+ L+ D R + + V++V+G + +A I
Sbjct: 14 TALLLLLEALAED--RRLGLLGLSDAEELLELVVIVSGSPEPLVRPVAKALGIDDVNVVG 71
Query: 710 DNVFTGTDLRKITDEELKDILETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGDGVND 769
+ ++T + K R + +VAV GD ++D
Sbjct: 72 TELENVLVDGRLT----GKLDGEGKAAALKR---------LAQKIGRYPVVAV-GDSISD 117
Query: 770 APALK 774
PALK
Sbjct: 118 LPALK 122
>gnl|CDD|223964 COG1033, COG1033, Predicted exporters of the RND superfamily
[General function prediction only].
Length = 727
Score = 35.0 bits (81), Expect = 0.21
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 10/99 (10%)
Query: 771 PALKKADI--GIAMGITGSEVSKQTADMILMDDNFASIVLGIEEGR------LIFDNLKK 822
++K +I G+ + +TG V + +L S VLGI +IF + K
Sbjct: 537 RDIEKENIPTGVKVYVTGESVIYVEMNELLTSSQLISTVLGI--ILVFALLLIIFRSPLK 594
Query: 823 SIAYILASNIPEILPFLFYIFLGIPLPVSTVTVLCIDLG 861
+I ++ I F LGIPL +T T+ I LG
Sbjct: 595 AIIPLIPIAIVVGWNFGLMGLLGIPLTPATATLGAIILG 633
>gnl|CDD|217749 pfam03824, NicO, High-affinity nickel-transport protein. High
affinity nickel transporters involved in the
incorporation of nickel into H2-uptake hydrogenase and
urease enzymes. Essential for the expression of
catalytically active hydrogenase and urease. Ion uptake
is dependent on proton motive force. HoxN in Alcaligenes
eutrophus is thought to be an integral membrane protein
with seven transmembrane helices. The family also
includes a cobalt transporter.
Length = 278
Score = 34.7 bits (80), Expect = 0.21
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 379 FLLALYIG-YNWLNACVYVIGIIVANVPEGLLATLTVSLTLTAKRLASKNCIVRRLQ--T 435
+LA Y+ + V + I ++ LLA L +L L AK+LA L +
Sbjct: 197 LMLAAYLWAFLGGRKLVLNMSITGTSITVALLAGLIETLGLLAKKLAGSGTFWSALGWLS 256
Query: 436 VETLG 440
+E +G
Sbjct: 257 LEIVG 261
>gnl|CDD|214881 smart00881, CoA_binding, CoA binding domain. This domain has a
Rossmann fold and is found in a number of proteins
including succinyl CoA synthetases, malate and
ATP-citrate ligases.
Length = 100
Score = 32.5 bits (75), Expect = 0.23
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 664 PRPAVPDAIDACHKAGIRVIMV 685
P A PDAID +AGI+ I+V
Sbjct: 74 PAEAAPDAIDEAIEAGIKGIVV 95
>gnl|CDD|234684 PRK00192, PRK00192, mannosyl-3-phosphoglycerate phosphatase;
Reviewed.
Length = 273
Score = 34.1 bits (79), Expect = 0.30
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 748 RIVELYQSLDEIVAVT-GDGVNDAPALKKADIGI 780
+ ELY+ D + + GD ND P L+ ADI +
Sbjct: 197 WLKELYRRQDGVETIALGDSPNDLPMLEAADIAV 230
>gnl|CDD|222115 pfam13419, HAD_2, Haloacid dehalogenase-like hydrolase.
Length = 176
Score = 33.1 bits (76), Expect = 0.42
Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 661 YDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHILSETSSDDNVFTGTDLRK 720
P P V + + G+++++++ + + K +L D VFT D+
Sbjct: 75 RLEPFPDVVELLRRLKAKGVKLVILSNGSREAVERLLEKLGLLDLF---DAVFTSDDVGA 131
Query: 721 I 721
Sbjct: 132 R 132
>gnl|CDD|200480 cd11341, AmyAc_Pullulanase_LD-like, Alpha amylase catalytic domain
found in Pullulanase (also called dextrinase;
alpha-dextrin endo-1,6-alpha glucosidase), limit
dextrinase, and related proteins. Pullulanase is an
enzyme with action similar to that of isoamylase; it
cleaves 1,6-alpha-glucosidic linkages in pullulan,
amylopectin, and glycogen, and in alpha-and beta-amylase
limit-dextrins of amylopectin and glycogen. Pullulanases
are very similar to limit dextrinases, although they
differ in their action on glycogen and the rate of
hydrolysis of limit dextrins. The Alpha-amylase family
comprises the largest family of glycoside hydrolases
(GH), with the majority of enzymes acting on starch,
glycogen, and related oligo- and polysaccharides. These
proteins catalyze the transformation of alpha-1,4 and
alpha-1,6 glucosidic linkages with retention of the
anomeric center. The protein is described as having 3
domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a
loop between the beta 3 strand and alpha 3 helix of A; C
is the C-terminal extension characterized by a Greek
key. The majority of the enzymes have an active site
cleft found between domains A and B where a triad of
catalytic residues (Asp, Glu and Asp) performs
catalysis. Other members of this family have lost the
catalytic activity as in the case of the human 4F2hc, or
only have 2 residues that serve as the catalytic
nucleophile and the acid/base, such as Thermus A4
beta-galactosidase with 2 Glu residues (GH42) and human
alpha-galactosidase with 2 Asp residues (GH31). The
family members are quite extensive and include: alpha
amylase, maltosyltransferase, cyclodextrin
glycotransferase, maltogenic amylase, neopullulanase,
isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 406
Score = 33.6 bits (78), Expect = 0.43
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 19/55 (34%)
Query: 635 PVNF-----KFSTDPMNFPSSGFRLIGLISLYDPPRPAVPDAIDACHKAGIRVIM 684
PVN+ +STDP + P + R+ + + A HK GIRVIM
Sbjct: 85 PVNYNVPEGSYSTDPYD-PYA--RIKEFKEM-----------VQALHKNGIRVIM 125
>gnl|CDD|181602 PRK08979, PRK08979, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 572
Score = 34.0 bits (78), Expect = 0.45
Identities = 26/63 (41%), Positives = 31/63 (49%), Gaps = 10/63 (15%)
Query: 829 ASNIPEILPFLFYIF-LGIPLPVSTVTVLCIDLGTD-MWPAVSLAYEKPESNIMSREPRN 886
A +IPEI+ FYI G P PV IDL D + PA+ YE PES + N
Sbjct: 135 AEDIPEIIKKAFYIASTGRPGPV------VIDLPKDCLNPAILHPYEYPES--IKMRSYN 186
Query: 887 PRT 889
P T
Sbjct: 187 PTT 189
>gnl|CDD|182988 PRK11133, serB, phosphoserine phosphatase; Provisional.
Length = 322
Score = 33.4 bits (77), Expect = 0.50
Identities = 27/73 (36%), Positives = 33/73 (45%), Gaps = 17/73 (23%)
Query: 710 DNVFTGTDLRKITDEELK-DILETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGDGVN 768
D TG L I D + K D L L Q+ I L Q+ VA+ GDG N
Sbjct: 232 DGKLTGNVLGDIVDAQYKADTL---TRL-------AQEYEI-PLAQT----VAI-GDGAN 275
Query: 769 DAPALKKADIGIA 781
D P +K A +GIA
Sbjct: 276 DLPMIKAAGLGIA 288
>gnl|CDD|189000 cd08662, M13, Peptidase family M13 includes neprilysin,
endothelin-converting enzyme I. M13 family of
metallopeptidases includes neprilysin (neutral
endopeptidase, NEP, enkephalinase, CD10, CALLA, EC
3.4.24.11), endothelin-converting enzyme I (ECE-1, EC
3.4.24.71), erythrocyte surface antigen KELL (ECE-3),
phosphate-regulating gene on the X chromosome (PHEX),
soluble secreted endopeptidase (SEP), and damage-induced
neuronal endopeptidase (DINE)/X-converting enzyme (XCE).
These proteins consist of a short N-terminal cytoplasmic
domain, a single transmembrane helix, and a larger
C-terminal extracellular domain containing the active
site. Proteins in this family fulfill a broad range of
physiological roles due to the greater variation in the
S2' subsite allowing substrate specificity. NEP is
expressed in a variety of tissues including kidney and
brain, and is involved in many physiological and
pathological processes, including blood pressure and
inflammatory response. It degrades a wide array of
substrates such as substance P, enkephalins,
cholecystokinin, neurotensin and somatostatin. It is an
important enzyme in the regulation of amyloid-beta
(Abeta) protein that forms amyloid plaques that are
associated with Alzeimers disease (AD). ECE-1 catalyzes
the final rate-limiting step in the biosynthesis of
endothelins via post-translational conversion of the
biologically inactive big endothelins. Like NEP, it also
hydrolyses bradykinin, substance P, neurotensin and
Abeta. Endothelin-1 overproduction has been implicated
in various diseases, including stroke, asthma,
hypertension, and cardiac and renal failure. Kell is a
homolog of NEP and constitutes a major antigen on human
erythrocytes; it preferentially cleaves big endothelin-3
to produce bioactive endothelin-3, but is also known to
cleave substance P and neurokinin A. PHEX forms a
complex interaction with fibroblast growth factor 23
(FGF23) and matrix extracellular phosphoglycoprotein,
causing bone mineralization. A loss-of-function mutation
in PHEX disrupts this interaction leading to
hypophosphatemic rickets; X-linked hypophosphatemic
(XLH) rickets is the most common form of metabolic
rickets. ECEL1 is a brain metalloprotease involved in
the critical role in the nervous regulation of the
respiratory system, while DINE (damage induced neuronal
endopeptidase) is abundantly expressed in the
hypothalamus and its expression responds to nerve injury
as well. Thus, majority of these M13 proteases are prime
therapeutic targets for selective inhibition.
Length = 611
Score = 33.4 bits (77), Expect = 0.60
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 698 IKCHILSETSSDDNVFTGTDLRKITDEELKDILETNKELVFARTSPLQKLRIVELYQS-L 756
+K H + S F+ +LR+ +E LK+ILE + +S QK I + Y+S +
Sbjct: 16 LKNHPIPADKSSYGSFS--ELREKVEERLKEILEEAAAEKASDSSAEQK--IKDFYRSCM 71
Query: 757 DE 758
D
Sbjct: 72 DT 73
>gnl|CDD|224440 COG1523, PulA, Type II secretory pathway, pullulanase PulA and
related glycosidases [Carbohydrate transport and
metabolism].
Length = 697
Score = 33.5 bits (77), Expect = 0.65
Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 28/77 (36%)
Query: 621 VLAFADL-HL---GQNNF----PVNFKFSTDPMNFPSSGFRLIGLISLYDPPRPAVP--- 669
V F D HL G NN P+NF F+ + + P PA
Sbjct: 222 VFDFYDEPHLDKSGLNNNWGYDPLNF-FAPEGRYASN--------------PEPATRIKE 266
Query: 670 --DAIDACHKAGIRVIM 684
D + A HKAGI VI+
Sbjct: 267 FKDMVKALHKAGIEVIL 283
>gnl|CDD|200488 cd11350, AmyAc_4, Alpha amylase catalytic domain found in an
uncharacterized protein family. The Alpha-amylase
family comprises the largest family of glycoside
hydrolases (GH), with the majority of enzymes acting on
starch, glycogen, and related oligo- and
polysaccharides. These proteins catalyze the
transformation of alpha-1,4 and alpha-1,6 glucosidic
linkages with retention of the anomeric center. The
protein is described as having 3 domains: A, B, C. A is
a (beta/alpha) 8-barrel; B is a loop between the beta 3
strand and alpha 3 helix of A; C is the C-terminal
extension characterized by a Greek key. The majority of
the enzymes have an active site cleft found between
domains A and B where a triad of catalytic residues
(Asp, Glu and Asp) performs catalysis. Other members of
this family have lost the catalytic activity as in the
case of the human 4F2hc, or only have 2 residues that
serve as the catalytic nucleophile and the acid/base,
such as Thermus A4 beta-galactosidase with 2 Glu
residues (GH42) and human alpha-galactosidase with 2 Asp
(GH31). The family members are quite extensive and
include: alpha amylase, maltosyltransferase,
cyclodextrin glycotransferase, maltogenic amylase,
neopullulanase, isoamylase, 1,4-alpha-D-glucan
maltotetrahydrolase, 4-alpha-glucotransferase,
oligo-1,6-glucosidase, amylosucrase, sucrose
phosphorylase, and amylomaltase.
Length = 390
Score = 33.0 bits (76), Expect = 0.65
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 6/25 (24%)
Query: 672 IDACHKAGIRVIM------VTGDHP 690
+D CH+ GI VI+ G P
Sbjct: 88 VDECHQRGIAVILDVVYNHAEGQSP 112
>gnl|CDD|200461 cd11322, AmyAc_Glg_BE, Alpha amylase catalytic domain found in the
Glycogen branching enzyme (also called 1,4-alpha-glucan
branching enzyme). The glycogen branching enzyme
catalyzes the third step of glycogen biosynthesis by the
cleavage of an alpha-(1,4)-glucosidic linkage and the
formation a new alpha-(1,6)-branch by subsequent
transfer of cleaved oligosaccharide. They are part of a
group called branching enzymes which catalyze the
formation of alpha-1,6 branch points in either glycogen
or starch. This group includes proteins from bacteria,
eukaryotes, and archaea. The Alpha-amylase family
comprises the largest family of glycoside hydrolases
(GH), with the majority of enzymes acting on starch,
glycogen, and related oligo- and polysaccharides. These
proteins catalyze the transformation of alpha-1,4 and
alpha-1,6 glucosidic linkages with retention of the
anomeric center. The protein is described as having 3
domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a
loop between the beta 3 strand and alpha 3 helix of A; C
is the C-terminal extension characterized by a Greek
key. The majority of the enzymes have an active site
cleft found between domains A and B where a triad of
catalytic residues (Asp, Glu and Asp) performs
catalysis. Other members of this family have lost the
catalytic activity as in the case of the human 4F2hc, or
only have 2 residues that serve as the catalytic
nucleophile and the acid/base, such as Thermus A4
beta-galactosidase with 2 Glu residues (GH42) and human
alpha-galactosidase with 2 Asp residues (GH31). The
family members are quite extensive and include: alpha
amylase, maltosyltransferase, cyclodextrin
glycotransferase, maltogenic amylase, neopullulanase,
isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 402
Score = 32.9 bits (76), Expect = 0.75
Identities = 9/13 (69%), Positives = 12/13 (92%)
Query: 672 IDACHKAGIRVIM 684
+DACH+AGI VI+
Sbjct: 114 VDACHQAGIGVIL 126
>gnl|CDD|139075 PRK12568, PRK12568, glycogen branching enzyme; Provisional.
Length = 730
Score = 33.0 bits (75), Expect = 1.00
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 10/56 (17%)
Query: 649 SSGFRLIGLISLYDP-PRPAVPDA----IDACHKAGIRVIM--VTGDHPCTAKAIA 697
S G++ +GL Y P R PD +DACH+AGI VI+ V+ P A +A
Sbjct: 300 SWGYQPLGL---YAPTARHGSPDGFAQFVDACHRAGIGVILDWVSAHFPDDAHGLA 352
>gnl|CDD|233730 TIGR02104, pulA_typeI, pullulanase, type I. Pullulan is an
unusual, industrially important polysaccharide in which
short alpha-1,4 chains (maltotriose) are connected in
alpha-1,6 linkages. Enzymes that cleave alpha-1,6
linkages in pullulan and release maltotriose are called
pullulanases although pullulan itself may not be the
natural substrate. This family consists of pullulanases
related to the subfamilies described in TIGR02102 and
TIGR02103 but having a different domain architecture
with shorter sequences. Members are called type I
pullulanases.
Length = 605
Score = 32.7 bits (75), Expect = 1.1
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 19/55 (34%)
Query: 635 PVNF-----KFSTDPMNFPSSGFRLIGLISLYDPPRPAVPDAIDACHKAGIRVIM 684
P+N+ +ST+P + P++ R+ L + I A H+ GIRVIM
Sbjct: 207 PLNYNVPEGSYSTNPYD-PAT--RIRELKQM-----------IQALHENGIRVIM 247
>gnl|CDD|237164 PRK12664, PRK12664, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 527
Score = 32.8 bits (75), Expect = 1.1
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 162 YVLVGYIFRGFSALLWFGALLSFLAYLL--EAETNEEKPQDNLWLG---IILALTCIVTG 216
VL +F S LL+ L F Y ++++ E + + IIL L C+V G
Sbjct: 336 LVLYKKLFLICSLLLFASVGLKFFWYAFISKSKSKPEAEKVYIGSKLSMIILVLICVVLG 395
Query: 217 MFSFY 221
MF+ Y
Sbjct: 396 MFNSY 400
>gnl|CDD|213628 TIGR01487, Pglycolate_arch, phosphoglycolate phosphatase,
TA0175-type. This group of Archaeal sequences, now
known to be phosphoglycolate phosphatases, is most
closely related to the sucrose-phosphate phosphatases
from plants and cyanobacteria (TIGR01485). Together,
these two models comprise a subfamily model (TIGR01482).
TIGR01482, in turn, is a member of the IIB subfamily
(TIGR01484) of the Haloacid Dehalogenase (HAD)
superfamily of aspartate-nucleophile hydrolases.
Length = 215
Score = 32.0 bits (73), Expect = 1.1
Identities = 40/193 (20%), Positives = 61/193 (31%), Gaps = 55/193 (28%)
Query: 659 SLYDPPRPAVPDAIDACHKA---GIRVIMVTGDHPCTAKAIAI----------------- 698
+L +P R AI+A KA GI V +VTG+ A+A+A+
Sbjct: 11 TLTEPNRMISERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTSGPVVAENGGVIF 70
Query: 699 ------------KCHILSETSSDDNVFTGTDLR------------KITDEELKDILETNK 734
+ L E K DE + I E
Sbjct: 71 YNKEDIFLANMEEEWFLDEEKKKRFPRDRLSNEYPRASLVIMREGKDVDEVREIIKERGL 130
Query: 735 ELVFARTS------PLQK----LRIVELYQSLDEIVAVTGDGVNDAPALKKADIGIAMGI 784
LV + + + K ++ EL E VA GD ND + +A+
Sbjct: 131 NLVASGFAIHIMKKGVDKGVGVEKLKELLGIKPEEVAAIGDSENDIDLFRVVGFKVAVA- 189
Query: 785 TGSEVSKQTADMI 797
+ K+ AD +
Sbjct: 190 NADDQLKEIADYV 202
>gnl|CDD|224762 COG1849, COG1849, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 90
Score = 30.1 bits (68), Expect = 1.2
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 568 LNKYFLLMKGAPEVIMERCTTMMAESDKEAFLTAEKKYELEDKIKLFASKGERVLAFADL 627
+ KY + E + E + S E F+ + Y ED K F KG+ V AFA L
Sbjct: 10 IEKYI---ELLEEALKEIKSRPGDRSAAEDFVDMAESY-FEDA-KYFLEKGDYVTAFAAL 64
>gnl|CDD|202717 pfam03647, Tmemb_14, Transmembrane proteins 14C. This family of
short membrane proteins are as yet uncharacterized.
Length = 96
Score = 30.3 bits (69), Expect = 1.2
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 9/66 (13%)
Query: 164 LVGYIFRG----FSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGMFS 219
++GY G A L FGALL + AYLL N+ L L ++ +
Sbjct: 16 IMGYAKAGSVPSLIAGLIFGALLGYGAYLLSQ--NQPY---GLELALLASAVLAGVMGPR 70
Query: 220 FYQERK 225
+ + RK
Sbjct: 71 YIKTRK 76
>gnl|CDD|132263 TIGR03219, salicylate_mono, salicylate 1-monooxygenase. Members of
this protein family are salicylate 1-monooxygenase, also
called salicylate hydroxylase. This enzyme converts
salicylate to catechol, which is a common intermediate
in the degradation of a number of aromatic compounds
(phenol, toluene, benzoate, etc.). The gene for this
protein may occur in catechol degradation genes, such as
those of the meta-cleavage pathway.
Length = 414
Score = 32.5 bits (74), Expect = 1.2
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 9/54 (16%)
Query: 77 HPRFVLDCSKKSILRFIHKEKEMDVAQLRDLKNEVDIDEHLIPLEELYSILDTH 130
PRF C+ + ++ D QLR+ +DEHL+ + ++Y LD H
Sbjct: 175 RPRFSGTCAYRGLV---------DSLQLREAYRAAGLDEHLVDVPQMYLGLDGH 219
>gnl|CDD|233437 TIGR01491, HAD-SF-IB-PSPlk, HAD-superfamily, subfamily-IB
PSPase-like hydrolase, archaeal. This hypothetical
equivalog is a member of the IB subfamily (TIGR01488) of
the haloacid dehalogenase (HAD) superfamily of
aspartate-nucleophile hydrolases. The sequences modelled
by This model are all from archaeal species. The
phylogenetically closest group of sequences to these are
phosphoserine phosphatases (TIGR00338). There are no
known archaeal phosphoserine phosphatases, and no
archaea fall within TIGR00338. It is likely, then, that
This model represents the archaeal branch of the PSPase
equivalog.
Length = 201
Score = 31.4 bits (71), Expect = 1.4
Identities = 19/36 (52%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 751 ELYQSLDEIVAVTGDGVNDAPALKKADIGIAMGITG 786
EL SL E VAV GD ND P + ADI I++G G
Sbjct: 158 ELNPSLTETVAV-GDSKNDLPMFEVADISISLGDEG 192
>gnl|CDD|153124 cd02433, Nodulin-21_like_2, Nodulin-21 and CCC1-related protein
family. Nodulin-21_like_2: This is a family of proteins
closely related to nodulin-21, a plant nodule-specific
protein that may be involved in symbiotic nitrogen
fixation. This family is also related to CCC1, a yeast
vacuole transmembrane protein that functions as an iron
and manganese transporter. .
Length = 234
Score = 31.6 bits (72), Expect = 1.7
Identities = 34/136 (25%), Positives = 51/136 (37%), Gaps = 20/136 (14%)
Query: 96 EKEMDVAQLRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRR---LEKDGPNSL 152
++E+ A + D + E PLEE + + +GL E E KR L D +L
Sbjct: 77 QRELLEASIPDERRE----LRKHPLEEAAELALIYRAKGLDEEEAKRVASQLMNDPEQAL 132
Query: 153 PQKYR---------INNVYVLVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLW 203
R + N + F F+ GAL+ L +L L
Sbjct: 133 DTLAREELGLDPELLGNPWSAAVSSFLLFA----LGALIPVLPFLFGMSGLAALVLSVLL 188
Query: 204 LGIILALTCIVTGMFS 219
+G+ L T VTG+ S
Sbjct: 189 VGLALLATGAVTGLLS 204
>gnl|CDD|99976 cd03804, GT1_wbaZ_like, This family is most closely related to the
GT1 family of glycosyltransferases. wbaZ in Salmonella
enterica has been shown to possess the mannosyl
transferase activity. The members of this family are
found in certain bacteria and Archaea.
Length = 351
Score = 31.7 bits (73), Expect = 1.7
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 15/70 (21%)
Query: 671 AIDACHKAGIRVIMVTGDHPCTAKAIAIKCHILSETSSDDNV-FTGTDLRKITDEELKDI 729
AI+A +K G R++ V GD P + A NV F G +++DEEL+D+
Sbjct: 213 AIEAFNKLGKRLV-VIGDGPELDRLRAKA---------GPNVTFLG----RVSDEELRDL 258
Query: 730 LETNKELVFA 739
+ +F
Sbjct: 259 YARARAFLFP 268
>gnl|CDD|233434 TIGR01484, HAD-SF-IIB, HAD-superfamily hydrolase, subfamily IIB.
This subfamily falls within the Haloacid Dehalogenase
(HAD) superfamily of aspartate-nucleophile hydrolases.
The Class II subfamilies are characterized by a domain
that is located between the second and third conserved
catalytic motifs of the superfamily domain. The IIB
subfamily is distinguished from the IIA subfamily
(TIGR01460) by homology and the predicted secondary
structure of this domain by PSI-PRED. The IIB
subfamily's Class II domain has the following predicted
structure: Helix-Sheet-Sheet-(Helix or
Sheet)-Helix-Sheet-(variable)-Helix-Sheet-Sheet. The IIB
subfamily consists of Trehalose-6-phosphatase
(TIGR00685), plant and cyanobacterial
Sucrose-phosphatase and a closely related group of
bacterial and archaeal sequences, eukaryotic
phosphomannomutase (pfam03332), a large subfamily
("Cof-like hydrolases", TIGR00099) containing many
closely related bacterial sequences, a hypothetical
equivalog containing the E. coli YedP protein, as well
as two small clusters containing OMNI|TC0379 and
OMNI|SA2196 whose relationship to the other groups is
unclear [Unknown function, Enzymes of unknown
specificity].
Length = 204
Score = 31.2 bits (71), Expect = 2.0
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
Query: 720 KITDEELKDILETNKELVFARTSPLQKLRIV-----ELYQSLDEIVAVTGDGVNDAPALK 774
D EL+ I K + + + K + EL DEI+A GD ND +
Sbjct: 139 GRNDLELEAIYV-GKTDLEVLPAGVDKGSALQALLKELNGKRDEILAF-GDSGNDEEMFE 196
Query: 775 KADIGIAM 782
A + +A+
Sbjct: 197 VAGLAVAV 204
>gnl|CDD|214758 smart00642, Aamy, Alpha-amylase domain.
Length = 166
Score = 30.4 bits (69), Expect = 2.4
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 670 DAIDACHKAGIRVIM 684
+ +DA H GI+VI+
Sbjct: 74 ELVDAAHARGIKVIL 88
>gnl|CDD|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate
transport and metabolism].
Length = 628
Score = 31.5 bits (72), Expect = 2.4
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 672 IDACHKAGIRVIM 684
+DA H+AGI VI+
Sbjct: 220 VDAAHQAGIGVIL 232
>gnl|CDD|235445 PRK05402, PRK05402, glycogen branching enzyme; Provisional.
Length = 726
Score = 31.3 bits (72), Expect = 3.1
Identities = 9/13 (69%), Positives = 12/13 (92%)
Query: 672 IDACHKAGIRVIM 684
+DACH+AGI VI+
Sbjct: 321 VDACHQAGIGVIL 333
>gnl|CDD|225452 COG2899, COG2899, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 346
Score = 30.8 bits (70), Expect = 3.1
Identities = 28/88 (31%), Positives = 36/88 (40%), Gaps = 23/88 (26%)
Query: 803 FASIVLGIEEGRLIFDNLKKSIAYILASNIPEILPFLFYIFL--GI-----------PLP 849
F VL + E L FDN A + A+ + ++ PF FL GI PL
Sbjct: 37 FICAVLAVLEISLSFDN-----AIVNAAILKDMSPFWQKRFLTWGILIAVFGMRLVFPLV 91
Query: 850 VSTVTVLCIDLGTDMWPAVSLAYEKPES 877
+ V G D A+ LA E PES
Sbjct: 92 IVAVAA-----GLDPIRAMKLALEPPES 114
>gnl|CDD|198174 cd09918, SH2_Nterm_SPT6_like, N-terminal Src homology 2 (SH2)
domain found in Spt6. N-terminal SH2 domain in Spt6.
Spt6 is an essential transcription elongation factor and
histone chaperone that binds the C-terminal repeat
domain (CTD) of RNA polymerase II. Spt6 contains a
tandem SH2 domain with a novel structure and CTD-binding
mode. The tandem SH2 domain binds to a serine
2-phosphorylated CTD peptide in vitro, whereas its
N-terminal SH2 subdomain does not. CTD binding requires
a positively charged crevice in the C-terminal SH2
subdomain, which lacks the canonical phospho-binding
pocket of SH2 domains. The tandem SH2 domain is
apparently required for transcription elongation in vivo
as its deletion in cells is lethal in the presence of
6-azauracil. In general SH2 domains are involved in
signal transduction. They typically bind
pTyr-containing ligands via two surface pockets, a pTyr
and hydrophobic binding pocket, allowing proteins with
SH2 domains to localize to tyrosine phosphorylated
sites.
Length = 85
Score = 28.7 bits (65), Expect = 3.2
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 728 DILETNKELVFARTSPLQKLRI-VELYQSLDEIVA 761
DI E NKE F+ ++L I E Y+ LDEI+A
Sbjct: 52 DIEELNKENPFSL---GKELIIGGEEYEDLDEIIA 83
>gnl|CDD|234875 PRK00957, PRK00957, methionine synthase; Provisional.
Length = 305
Score = 30.7 bits (70), Expect = 3.4
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 640 FSTDPMNFPSSGFRLIGLISLYDPPRPAVPDAIDACHKAGIRVI---MVTGD 688
+ + ++ G LYDP +PA+ +A+ KAGI +I V GD
Sbjct: 10 YPVVKGEPETLKDKIKGFFGLYDPYKPAIEEAVADQVKAGIDIISDGQVRGD 61
>gnl|CDD|205524 pfam13344, Hydrolase_6, Haloacid dehalogenase-like hydrolase. This
family is part of the HAD superfamily.
Length = 101
Score = 28.9 bits (66), Expect = 3.5
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 666 PAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHILSETSSDDNVFT 714
P +A++A AG V+ VT + + + A K L +D V T
Sbjct: 17 PGAAEALNALRAAGKPVVFVTNNSSRSREQYAKKLRKLGFDVDEDEVIT 65
>gnl|CDD|180578 PRK06466, PRK06466, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 574
Score = 30.9 bits (70), Expect = 3.7
Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 829 ASNIPEILPFLFYIF-LGIPLPVSTVTVLCIDLGTDMW-PAVSLAYEKPES-NIMSREP 884
AS IPEI+ FYI G P PV +D+ DM PA YE P+ + S P
Sbjct: 135 ASEIPEIIKKAFYIAQSGRPGPV------VVDIPKDMTNPAEKFEYEYPKKVKLRSYSP 187
>gnl|CDD|237088 PRK12393, PRK12393, amidohydrolase; Provisional.
Length = 457
Score = 30.8 bits (70), Expect = 4.0
Identities = 11/34 (32%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 764 GDGVNDAPALKKADIGIAMGITGSEVSKQTADMI 797
G G+ A A++ A + +++G+ G+ S ++ADM+
Sbjct: 304 GSGIAPALAMEAAGVPVSLGVDGA-ASNESADML 336
>gnl|CDD|223849 COG0778, NfnB, Nitroreductase [Energy production and conversion].
Length = 207
Score = 29.9 bits (67), Expect = 4.3
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 16/65 (24%)
Query: 719 RKITDEELKDILETNKELVFARTSP----LQKLRIV------ELYQSLDEIVAVTGDGVN 768
+ I +E+L+ ILE AR +P LQ R + EL +L E+ +
Sbjct: 22 KPIPEEDLEKILEA------ARLAPSAGNLQPWRFIVVRDEDELKAALAELAGGGQAQLK 75
Query: 769 DAPAL 773
+A AL
Sbjct: 76 EASAL 80
>gnl|CDD|236882 PRK11204, PRK11204, N-glycosyltransferase; Provisional.
Length = 420
Score = 30.7 bits (70), Expect = 4.4
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 172 FSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGMFSFYQER 224
LLW L L +E + W GI+L TC++ + S + +R
Sbjct: 317 LILLLWLIGQLVPLPPNIEVYS----FSLPHWSGILLTFTCLLQFIVSLFIDR 365
>gnl|CDD|227773 COG5486, COG5486, Predicted metal-binding integral membrane protein
[Function unknown].
Length = 283
Score = 30.2 bits (68), Expect = 4.7
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 10/59 (16%)
Query: 172 FSALLWFGA----------LLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGMFSF 220
+ L F A LL+ L P + G+ LT +V G++ F
Sbjct: 122 VAHTLVFVAGYLLVWAAFGLLATGLQWLLHAFALLGPILSPLSGLAGGLTLLVAGLYQF 180
>gnl|CDD|176685 cd07264, Glo_EDI_BRP_like_15, This conserved domain belongs to a
superfamily including the bleomycin resistance protein,
glyoxalase I, and type I ring-cleaving dioxygenases.
This protein family belongs to a conserved domain
superfamily that is found in a variety of structurally
related metalloproteins, including the bleomycin
resistance protein, glyoxalase I, and type I
ring-cleaving dioxygenases. A bound metal ion is
required for protein activities for the members of this
superfamily. A variety of metal ions have been found in
the catalytic centers of these proteins including
Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein
superfamily contains members with or without domain
swapping.
Length = 125
Score = 29.2 bits (66), Expect = 4.9
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 9/42 (21%)
Query: 598 FLTAEKKY-ELEDKIKLFASKGERVLAFADLHLGQNNFPVNF 638
FL Y ELE GE LAFA L ++N F
Sbjct: 28 FLHESGDYGELE--------TGETTLAFASHDLAESNLKGGF 61
>gnl|CDD|182622 PRK10655, potE, putrescine transporter; Provisional.
Length = 438
Score = 30.4 bits (69), Expect = 5.1
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 8/44 (18%)
Query: 153 PQKYRINNVYVLVGYIF-------RGFSALLWFGALLSFLAYLL 189
P K ++ N VG ++ G A+L+ G++++FL + L
Sbjct: 381 PSKAKVANFIAFVGALYSFYALYSSGEEAMLY-GSIVTFLGWTL 423
>gnl|CDD|217024 pfam02417, Chromate_transp, Chromate transporter. Members of this
family probably act as chromate transporters. Members of
this family are found in both bacteria and
archaebacteria. The proteins are composed of one or two
copies of this region. The alignment contains two
conserved motifs, FGG and PGP.
Length = 169
Score = 29.4 bits (67), Expect = 5.2
Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 33/97 (34%)
Query: 148 GPNSLPQKYRINNVYVLVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGII 207
GPN++ N+ +GY G + GAL++ LG
Sbjct: 55 GPNAI-------NLATFIGYRLAG-----FLGALVA-------------------TLGFF 83
Query: 208 LALTCIVTGMFSFYQERKSSHITESFAKMIPTRATVI 244
L ++ + Y+ K S ++F + + V+
Sbjct: 84 LPSFLLILLLAPLYKRFKDSPWVQAFLAGV--KPAVV 118
>gnl|CDD|234190 TIGR03376, glycerol3P_DH, glycerol-3-phosphate dehydrogenase
(NAD(+)). Members of this protein family are the
eukaryotic enzyme, glycerol-3-phosphate dehydrogenase
(NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is
defined as sn-glycerol 3-phosphate + NAD(+) = glycerone
phosphate + NADH. Note the very similar reactions of
enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to
families of proteins in the bacteria.
Length = 342
Score = 30.4 bits (69), Expect = 5.2
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Query: 843 FLGIPLPVSTVTVLCIDLGTDMWPAVSLAYEKPESNIMSREPRNPRTDHLVGRKLVTYAY 902
LGIP V + L ++ + + ++ Y R+P + D V + L Y
Sbjct: 136 ELGIPCGVLSGANLANEVAKEKFSETTVGY---------RDPADFDVDARVLKALFHRPY 186
Query: 903 FHLGILETLAG 913
F + +++ +AG
Sbjct: 187 FRVNVVDDVAG 197
>gnl|CDD|131724 TIGR02677, TIGR02677, TIGR02677 family protein. Members of this
protein belong to a conserved gene four-gene
neighborhood found sporadically in a phylogenetically
broad range of bacteria: Nocardia farcinica,
Symbiobacterium thermophilum, and Streptomyces
avermitilis (Actinobacteria), Geobacillus kaustophilus
(Firmicutes), Azoarcus sp. EbN1 and Ralstonia
solanacearum (Betaproteobacteria) [Hypothetical
proteins, Conserved].
Length = 494
Score = 30.2 bits (68), Expect = 5.9
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 735 ELVFARTSPLQKLRIVELYQSLDEIVAVTGDGVNDA 770
E LQ + ++ Q L E++A+ DA
Sbjct: 105 EQALGSRGALQTAALDDIVQRLRELLALIDQPRPDA 140
>gnl|CDD|224899 COG1988, COG1988, Predicted membrane-bound metal-dependent
hydrolases [General function prediction only].
Length = 190
Score = 29.3 bits (66), Expect = 6.0
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 156 YRINNVYVLVGYIFRGFSALLWFGALLSFL-AYLLEAETNEEKPQDNLWLGIILALTCIV 214
++ ++ + + RGF+ L F A+ L LL +D L LG+ L + +
Sbjct: 51 LKLPDISLYIRLGHRGFTHSLLFAAVALLLLGLLLFLFFLPLIFKD-LLLGLFLGVFSHI 109
>gnl|CDD|220442 pfam09850, DUF2077, Uncharacterized protein conserved in bacteria
(DUF2077). This domain, found in various hypothetical
prokaryotic proteins, has no known function.
Length = 206
Score = 29.5 bits (67), Expect = 6.3
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 364 MRLISMWALTLGAICFLLALYIGYNWL 390
R + +W + A LL LY+G ++
Sbjct: 179 RRRVPLWVIAALAALLLLLLYLGLSYW 205
>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex
dihydrolipoamide acetyltransferase, long form. This
model describes a subset of pyruvate dehydrogenase
complex dihydrolipoamide acetyltransferase specifically
close by both phylogenetic and per cent identity (UPGMA)
trees. Members of this set include two or three copies
of the lipoyl-binding domain. E. coli AceF is a member
of this model, while mitochondrial and some other
bacterial forms belong to a separate model [Energy
metabolism, Pyruvate dehydrogenase].
Length = 546
Score = 30.2 bits (68), Expect = 6.5
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 249 VKEIDSAGLVRGDIVLLKIGDKVPADIRLIEIQDLKAE---NSSLTGEVEPVTCTLGAT 304
V +I V VL+K+GD V AD LI ++ KA + +G V+ V +G +
Sbjct: 121 VPDIGDIEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDS 179
>gnl|CDD|162723 TIGR02137, HSK-PSP, phosphoserine phosphatase/homoserine
phosphotransferase bifunctional protein. This protein
is has been characterized as both a phosphoserine
phosphatase and a phosphoserine:homoserine
phosphotransferase. In Pseudomonas aeruginosa, where the
characterization was done, a second phosphoserine
phosphatase (SerB) and a second homoserine kinase (thrB)
are found, but in Fibrobacter succinogenes neither are
present. This enzyme is a member of the haloacid
dehalogenase (HAD) superfamily, specifically part of
subfamily IB by virtue of the presence of an alpha
helical domain in between motifs I and II of the HAD
domain. The closest homologs to this family are
monofunctional phosphoserine phosphatases (TIGR00338).
Length = 203
Score = 29.5 bits (66), Expect = 6.9
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 745 QKLRIVELYQSLDEIVAVTGDGVNDAPALKKADIGI 780
K + V ++SL V GD ND L +A GI
Sbjct: 132 PKRQSVIAFKSLYYRVIAAGDSYNDTTMLSEAHAGI 167
>gnl|CDD|202320 pfam02629, CoA_binding, CoA binding domain. This domain has a
Rossmann fold and is found in a number of proteins
including succinyl CoA synthetases, malate and
ATP-citrate ligases.
Length = 96
Score = 27.9 bits (63), Expect = 6.9
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 664 PRPAVPDAIDACHKAGIRVIMV 685
P P +AID AGI+ I+
Sbjct: 71 PAPFAQEAIDELVDAGIKGIVN 92
>gnl|CDD|223961 COG1030, NfeD, Membrane-bound serine protease (ClpP class)
[Posttranslational modification, protein turnover,
chaperones].
Length = 436
Score = 30.0 bits (68), Expect = 7.1
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 373 TLGAICFLLALY----IGYNWLNACVYVIGII 400
+GAI LL Y +G NW + ++G I
Sbjct: 262 IIGAILLLLGFYGLLFLGINWAGLLLIILGAI 293
>gnl|CDD|152119 pfam11683, DUF3278, Protein of unknown function (DUF3278). This
bacterial family of proteins has no known function.
Length = 129
Score = 28.4 bits (64), Expect = 7.3
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 170 RGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGMFSFYQERKSSHI 229
F L S +A L ++ EE + IL L ++ + YQ RK +
Sbjct: 35 NAFIILFLILIAGSLIALFLASKYPEEVAYI--YPSTILLLFTLIASGYIMYQSRK-KGL 91
Query: 230 TE 231
T+
Sbjct: 92 TD 93
>gnl|CDD|227489 COG5160, ULP1, Protease, Ulp1 family [Posttranslational
modification, protein turnover, chaperones].
Length = 578
Score = 29.9 bits (67), Expect = 7.8
Identities = 13/95 (13%), Positives = 28/95 (29%), Gaps = 11/95 (11%)
Query: 22 SRGSRKKKSWSSKHNTTKDVNIYMSSATKNNYFEKLSTQSKTFFNTRKASLEKKSHPRFV 81
SR K K + ++ N + K+ S K L
Sbjct: 169 SRDLFKVKMILDVNLSSI--NRNTNILIKSTA-------SSILS--IKNFLLMSYINSIK 217
Query: 82 LDCSKKSILRFIHKEKEMDVAQLRDLKNEVDIDEH 116
L+ +S H + + ++K ++ ++
Sbjct: 218 LEILDQSEKHLTHPSSSPESSPSLNMKQLINSTKN 252
>gnl|CDD|130218 TIGR01148, mtrC, N5-methyltetrahydromethanopterin:coenzyme M
methyltransferase subunit C. This model describes
N5-methyltetrahydromethanopterin: coenzyme M
methyltransferase subunit C in methanogenic archaea.
This methyltranferase is membrane-associated enzyme
complex that uses methyl-transfer reaction to drive
sodium-ion pump. Archaea have evolved energy-yielding
pathways marked by one-carbon biochemistry featuring
novel cofactors and enzymes. This transferase is
involved in the transfer of 'methyl' group from
N5-methyltetrahydromethanopterin to coenzyme M. In an
accompanying reaction, methane is produced by
two-electron reduction of the methyl moiety in
methyl-coenzyme M by another enzyme methyl-coenzyme M
reductase [Energy metabolism, Other].
Length = 265
Score = 29.4 bits (66), Expect = 8.5
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 367 ISMWALTLGAICFLLALYIGYNWLNACVYVIGIIVANVPEGLLATLTV 414
I M +L +G + + L +G N +I ++VA + G++ L
Sbjct: 75 IGMMSLGMGILAAVAGLALGGNTPAIAAPIIALVVAAIIGGVVGVLAN 122
>gnl|CDD|200451 cd00551, AmyAc_family, Alpha amylase catalytic domain family. The
Alpha-amylase family comprises the largest family of
glycoside hydrolases (GH), with the majority of enzymes
acting on starch, glycogen, and related oligo- and
polysaccharides. These proteins catalyze the
transformation of alpha-1,4 and alpha-1,6 glucosidic
linkages with retention of the anomeric center. The
protein is described as having 3 domains: A, B, C. A is
a (beta/alpha) 8-barrel; B is a loop between the beta 3
strand and alpha 3 helix of A; and C is the C-terminal
extension characterized by a Greek key. The majority of
the enzymes have an active site cleft found between
domains A and B where a triad of catalytic residues
(Asp, Glu and Asp) performs catalysis. Other members of
this family have lost this catalytic activity as in the
case of the human 4F2hc, or only have 2 residues that
serve as the catalytic nucleophile and the acid/base,
such as Thermus A4 beta-galactosidase with 2 Glu
residues (GH42) and human alpha-galactosidase with 2 Asp
residues (GH31). The family members are quite extensive
and include: alpha amylase, maltosyltransferase,
cyclodextrin glycotransferase, maltogenic amylase,
neopullulanase, isoamylase, 1,4-alpha-D-glucan
maltotetrahydrolase, 4-alpha-glucotransferase,
oligo-1,6-glucosidase, amylosucrase, sucrose
phosphorylase, and amylomaltase.
Length = 260
Score = 29.4 bits (66), Expect = 8.7
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 672 IDACHKAGIRVIM 684
+ A HK GI+VI+
Sbjct: 82 VKAAHKRGIKVIL 94
>gnl|CDD|225260 COG2386, CcmB, ABC-type transport system involved in cytochrome c
biogenesis, permease component [Posttranslational
modification, protein turnover, chaperones].
Length = 221
Score = 28.8 bits (65), Expect = 10.0
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 820 LKKSIAYILASNIPEILPF-LFYIFLGIPLPVSTVTVLCIDLGTDMWPAVSL 870
L K +A+ L + +P +L L + L + + L + LGT PA+S
Sbjct: 95 LGKVLAHWLLTGLPLVLASPLLALLLNMDVGALGALALTLLLGT---PALSF 143
>gnl|CDD|213950 TIGR04337, AmmeMemoSam_rS, AmmeMemoRadiSam system radical SAM
enzyme. Members of this protein family are
uncharacterized radical SAM enzymes that occur in a
prokaryotic three-gene system along with homologs of
mammalian proteins Memo (Mediator of ErbB2-driven cell
MOtility) and AMMERCR1 (Alport syndrome, Mental
Retardation, Midface hypoplasia, and Elliptocytosis).
Among radical SAM enzymes that have been experimentally
characterized, the most closely related in sequence
include activases of pyruvate formate-lyase and of
benzylsuccinate synthase.
Length = 349
Score = 29.2 bits (66), Expect = 10.0
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 670 DAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHILSETSSDDNVFTGTDLRKITDEELKDI 729
D AC + GI+ + VT + C H+ + D FT K+ L+ +
Sbjct: 137 DVAQACRERGIKTVAVTAGYICPEPRAEFYAHM-DAANVDLKAFTEDFYHKLCGGHLQPV 195
Query: 730 LET 732
L+T
Sbjct: 196 LDT 198
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.394
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 48,873,360
Number of extensions: 4946923
Number of successful extensions: 5866
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5735
Number of HSP's successfully gapped: 157
Length of query: 961
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 855
Effective length of database: 6,236,078
Effective search space: 5331846690
Effective search space used: 5331846690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (28.5 bits)