RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6866
(961 letters)
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
1iwc_A 1iwf_A
Length = 1034
Score = 1150 bits (2976), Expect = 0.0
Identities = 402/916 (43%), Positives = 570/916 (62%), Gaps = 28/916 (3%)
Query: 71 SLEKKSHPRFVLDCSKKSILRFIHKEKEMDVAQLRDLKNEVDIDEHLIPLEELYSILDTH 130
+ + P D + K + + +L ++K E++I++H + + EL T
Sbjct: 9 LYQVELGPGPSGDMAAKMSKKKAGRGGGKRKEKLENMKKEMEINDHQLSVAELEQKYQTS 68
Query: 131 PDRGLSELEVKRRLEKDGPNSLPQKYRINNVYVLVGYIFRGFSALLWFGALLSFLAYLLE 190
+GLS L +DGPN+L + G L+W A + +A+ ++
Sbjct: 69 ATKGLSASLAAELLLRDGPNALRPPRGTPEYVKFARQLAGGLQCLMWVAAAICLIAFAIQ 128
Query: 191 AETNEEKPQDNLWLGIILALTCIVTGMFSFYQERKSSHITESFAKMIPTRATVIRNGSVK 250
A + DNL+L + L +VTG F +YQE KS++I SF ++P +ATVIR+G
Sbjct: 129 ASEGDLTTDDNLYLALALIAVVVVTGCFGYYQEFKSTNIIASFKNLVPQQATVIRDGDKF 188
Query: 251 EIDSAGLVRGDIVLLKIGDKVPADIRLIEIQDLKAENSSLTGEVEPVTCTLGATNSFAVE 310
+I++ LV GD+V +K GD+VPADIR+++ Q K +NSSLTGE EP T + T+ +E
Sbjct: 189 QINADQLVVGDLVEMKGGDRVPADIRILQAQGRKVDNSSLTGESEPQTRSPECTHESPLE 248
Query: 311 SRNLVFFSTNLVSGSGKGVVILTGSNTVMGKIAGLTNRLEKKTTPIEQEVQHFMRLISMW 370
+RN+ FFST + G+ +G+V+ TG T++G+IA L + +E + TPI E++HF+ +I+
Sbjct: 249 TRNIAFFSTMCLEGTAQGLVVNTGDRTIIGRIASLASGVENEKTPIAIEIEHFVDIIAGL 308
Query: 371 ALTLGAICFLLALYIGYNWLNACVYVIGIIVANVPEGLLATLTVSLTLTAKRLASKNCIV 430
A+ GA F++A+ IGY +L A V+ + I+VA VPEGLLAT+TV L+LTAKRLASKNC+V
Sbjct: 309 AILFGATFFIVAMCIGYTFLRAMVFFMAIVVAYVPEGLLATVTVCLSLTAKRLASKNCVV 368
Query: 431 RRLQTVETLGSIRTICTDKTGTLTQNKMTVLHLSFNREIYHVKNGVDVDIQNFE-TNTTY 489
+ L+ VETLGS IC+DKTGTLTQN+MTV HL F+ I+ D Q F+ ++ T+
Sbjct: 369 KNLEAVETLGSTSVICSDKTGTLTQNRMTVSHLWFDNHIHSADTTEDQSGQTFDQSSETW 428
Query: 490 KTLVRAACLCSKAEFEPNQDNIPMRERKASGDATEVGILHFIQPRIKSIQDVRNTFPKVT 549
+ L R LC++A F+ QD +P+ +R GDA+E +L F + + + R FPKV
Sbjct: 429 RALCRVLTLCNRAAFKSGQDAVPVPKRIVIGDASETALLKFSELTLGNAMGYRERFPKVC 488
Query: 550 EVPFNSLNKFHLTVH---FSPLNKYFLLMKGAPEVIMERCTTMMAESDKEAFLTAEKKYE 606
E+PFNS NKF L++H ++ L+MKGAPE ++ERC++++ + +E L + +
Sbjct: 489 EIPFNSTNKFQLSIHTLEDPRDPRHVLVMKGAPERVLERCSSILIK-GQELPLDEQWREA 547
Query: 607 LEDKIKLFASKGERVLAFADLHLGQNNFPVNFKFSTDPMNFPSSGFRLIGLISLYDPPRP 666
+ GERVL F L+L + ++P + F + MNFP+SG GL+S+ DPPR
Sbjct: 548 FQTAYLSLGGLGERVLGFCQLYLSEKDYPPGYAFDVEAMNFPTSGLSFAGLVSMIDPPRA 607
Query: 667 AVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHILSE--------------------- 705
VPDA+ C AGIRVIMVTGDHP TAKAIA I+SE
Sbjct: 608 TVPDAVLKCRTAGIRVIMVTGDHPITAKAIAASVGIISEGSETVEDIAARLRVPVDQVNR 667
Query: 706 TSSDDNVFTGTDLRKITDEELKDILETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGD 765
+ V G L+ + EL + L T+ E+VFARTSP QKL IVE Q L IVAVTGD
Sbjct: 668 KDARACVINGMQLKDMDPSELVEALRTHPEMVFARTSPQQKLVIVESCQRLGAIVAVTGD 727
Query: 766 GVNDAPALKKADIGIAMGITGSEVSKQTADMILMDDNFASIVLGIEEGRLIFDNLKKSIA 825
GVND+PALKKADIG+AMGI GS+ +K ADMIL+DDNFASIV G+E+GRLIFDNLKKSIA
Sbjct: 728 GVNDSPALKKADIGVAMGIAGSDAAKNAADMILLDDNFASIVTGVEQGRLIFDNLKKSIA 787
Query: 826 YILASNIPEILPFLFYIFLGIPLPVSTVTVLCIDLGTDMWPAVSLAYEKPESNIMSREPR 885
Y L NIPE+ P+L YI + +PLP+ +T+L I+L TD++P+VSLAYEK ES+IM PR
Sbjct: 788 YTLTKNIPELTPYLIYITVSVPLPLGCITILFIELCTDIFPSVSLAYEKAESDIMHLRPR 847
Query: 886 NPRTDHLVGRKLVTYAYFHLGILETLAGFLTYFHVMYDAGWDPMDLLNIRKSWESN--NN 943
NP+ D LV L Y+YF +G +++ AGF YF M GW P+ + +R WE++ +
Sbjct: 848 NPKRDRLVNEPLAAYSYFQIGAIQSFAGFTDYFTAMAQEGWFPLLCVGLRPQWENHHLQD 907
Query: 944 LEDSYHKMWTRTERTW 959
L+DSY + WT +R +
Sbjct: 908 LQDSYGQEWTFGQRLY 923
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A
1mo8_A* 1q3i_A
Length = 1028
Score = 1148 bits (2971), Expect = 0.0
Identities = 437/894 (48%), Positives = 594/894 (66%), Gaps = 28/894 (3%)
Query: 95 KEKEMDVAQLRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQ 154
K+K L +LK EV +D+H + L+EL++ T RGL+ K L +DGPNSL
Sbjct: 28 KDKIDKKRDLDELKKEVSMDDHKLSLDELHNKYGTDLTRGLTNARAKEILARDGPNSLTP 87
Query: 155 KYRINNVYVLVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIV 214
+F GFS LLW GA+L FLAY ++A T +E DNL+LG++L+ IV
Sbjct: 88 PPTTPEWIKFCRQLFGGFSILLWIGAILCFLAYGIQAATEDEPANDNLYLGVVLSTVVIV 147
Query: 215 TGMFSFYQERKSSHITESFAKMIPTRATVIRNGSVKEIDSAGLVRGDIVLLKIGDKVPAD 274
TG FS+YQE KSS I +SF M+P +A VIR+G I++ +V GD+V +K GD++PAD
Sbjct: 148 TGCFSYYQEAKSSRIMDSFKNMVPQQALVIRDGEKSTINAEFVVAGDLVEVKGGDRIPAD 207
Query: 275 IRLIEIQDLKAENSSLTGEVEPVTCTLGATNSFAVESRNLVFFSTNLVSGSGKGVVILTG 334
+R+I K +NSSLTGE EP T + ++ +E+RN+ FFSTN V G+ +GVV+ TG
Sbjct: 208 LRIISAHGCKVDNSSLTGESEPQTRSPEFSSENPLETRNIAFFSTNCVEGTARGVVVYTG 267
Query: 335 SNTVMGKIAGLTNRLEKKTTPIEQEVQHFMRLISMWALTLGAICFLLALYIGYNWLNACV 394
TVMG+IA L + LE TPI E++HF+ +I+ A+ LG F+L+L +GY+WL A +
Sbjct: 268 DRTVMGRIATLASGLEVGRTPIAIEIEHFIHIITGVAVFLGVSFFILSLILGYSWLEAVI 327
Query: 395 YVIGIIVANVPEGLLATLTVSLTLTAKRLASKNCIVRRLQTVETLGSIRTICTDKTGTLT 454
++IGIIVANVPEGLLAT+TV LTLTAKR+A KNC+V+ L+ VETLGS TIC+DKTGTLT
Sbjct: 328 FLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLT 387
Query: 455 QNKMTVLHLSFNREIYHVKNGVDVDIQNFE-TNTTYKTLVRAACLCSKAEFEPNQDNIPM 513
QN+MTV H+ F+ +I+ + F+ T+ T+ L R A LC++A F+ QDN+P+
Sbjct: 388 QNRMTVAHMWFDNQIHEADTTENQSGAAFDKTSATWSALSRIAALCNRAVFQAGQDNVPI 447
Query: 514 RERKASGDATEVGILHFIQPRIKSIQDVRNTFPKVTEVPFNSLNKFHLTVH---FSPLNK 570
+R +GDA+E +L I+ S+Q +R+ PK+ E+PFNS NK+ L++H S ++
Sbjct: 448 LKRSVAGDASESALLKCIELCCGSVQGMRDRNPKIVEIPFNSTNKYQLSIHENEKSSESR 507
Query: 571 YFLLMKGAPEVIMERCTTMMAESDKEAFLTAEKKYELEDKIKLFASKGERVLAFADLHLG 630
Y L+MKGAPE I++RC+T++ E L + K ++ GERVL F L
Sbjct: 508 YLLVMKGAPERILDRCSTILLN-GAEEPLKEDMKEAFQNAYLELGGLGERVLGFCHFALP 566
Query: 631 QNNFPVNFKFSTDPMNFPSSGFRLIGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHP 690
++ + + F D NFP++ +GL+++ DPPR AVPDA+ C AGI+VIMVTGDHP
Sbjct: 567 EDKYNEGYPFDADEPNFPTTDLCFVGLMAMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHP 626
Query: 691 CTAKAIAIKCHILSE---------------------TSSDDNVFTGTDLRKITDEELKDI 729
TAKAIA I+SE + V G+DL+ ++ E L DI
Sbjct: 627 ITAKAIAKGVGIISEGNETIEDIAARLNIPIGQVNPRDAKACVVHGSDLKDLSTEVLDDI 686
Query: 730 LETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGDGVNDAPALKKADIGIAMGITGSEV 789
L + E+VFARTSP QKL IVE Q IVAVTGDGVND+PALKKADIG+AMGI+GS+V
Sbjct: 687 LHYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGISGSDV 746
Query: 790 SKQTADMILMDDNFASIVLGIEEGRLIFDNLKKSIAYILASNIPEILPFLFYIFLGIPLP 849
SKQ ADMIL+DDNFASIV G+EEGRLIFDNLKKSIAY L SNIPEI PFL +I +PLP
Sbjct: 747 SKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLVFIIGNVPLP 806
Query: 850 VSTVTVLCIDLGTDMWPAVSLAYEKPESNIMSREPRNPRTDHLVGRKLVTYAYFHLGILE 909
+ TVT+LCIDLGTDM PA+SLAYE+ ES+IM R+PRNP+TD LV +L++ AY +G+++
Sbjct: 807 LGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQPRNPKTDKLVNERLISMAYGQIGMIQ 866
Query: 910 TLAGFLTYFHVMYDAGWDPMDLLNIRKSWESN--NNLEDSYHKMWTRTERTWTY 961
L GF +YF ++ + G+ PMDL+ R W+ +++EDS+ + WT +R
Sbjct: 867 ALGGFFSYFVILAENGFLPMDLIGKRVRWDDRWISDVEDSFGQQWTYEQRKIVE 920
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase,
hydrolase, calcium transport, calcium binding binding;
HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB:
2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A*
2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A*
3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Length = 995
Score = 756 bits (1953), Expect = 0.0
Identities = 261/905 (28%), Positives = 409/905 (45%), Gaps = 98/905 (10%)
Query: 116 HLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRI----------NNVYVLV 165
H EE + GL+ +VKR LEK G N LP + ++ V +
Sbjct: 6 HSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRI 65
Query: 166 GYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGMFSFYQERK 225
L A +SF+ L E EE + +IL + I + +QER
Sbjct: 66 ----------LLLAACISFV--LAWFEEGEETITAFVEPFVILLIL-IANAIVGVWQERN 112
Query: 226 SSHITESFAKMIPTRATVIRNG--SVKEIDSAGLVRGDIVLLKIGDKVPADIRLIEIQ-- 281
+ + E+ + P V R SV+ I + +V GDIV + +GDKVPADIR++ I+
Sbjct: 113 AENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKST 172
Query: 282 DLKAENSSLTGEVEPV---TCTLGATNSFAVESRNLVFFSTNLVSGSGKGVVILTGSNTV 338
L+ + S LTGE V T + + + +N++F TN+ +G G+V TG +T
Sbjct: 173 TLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTE 232
Query: 339 MGKIAGLTNRLEKKTTPIEQEVQHFMRLISMWALTLGAICFLLALYIG------YNWLNA 392
+GKI E+ TP++Q++ F +S + +L+ + +W+
Sbjct: 233 IGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHFNDPVHGGSWIRG 292
Query: 393 CVYV----IGIIVANVPEGLLATLTVSLTLTAKRLASKNCIVRRLQTVETLGSIRTICTD 448
+Y + + VA +PEGL A +T L L +R+A KN IVR L +VETLG IC+D
Sbjct: 293 AIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSD 352
Query: 449 KTGTLTQNKMTVLHL---------SFNREIYHV------------KNGVDVDIQNFETNT 487
KTGTLT N+M+V + + + + KN + F+
Sbjct: 353 KTGTLTTNQMSVCKMFIIDKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSGQFDG-- 410
Query: 488 TYKTLVRAACLCSKAEFEPNQDNIPMRERKASGDATE----------------VGILHFI 531
L LC+ + + N+ + G+ATE V L +
Sbjct: 411 -LVELATICALCNDSSLDFNETK---GVYEKVGEATETALTTLVEKMNVFNTEVRNLSKV 466
Query: 532 QPRIKSIQDVRNTFPKVTEVPFNSLNKFHLTVHFSP-----LNKYFLLMKGAPEVIMERC 586
+ +R K + F+ K + +KGAPE +++RC
Sbjct: 467 ERANACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRC 526
Query: 587 TTMMAESDKEAFLTAEKKYELEDKIKLF--ASKGERVLAFADLHLGQNNFPVNFKFSTDP 644
+ + + +T K ++ IK + R LA A + S+
Sbjct: 527 NYVRVGTTRVP-MTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRF 585
Query: 645 MNFPSSGFRLIGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHILS 704
M + + +G++ + DPPR V +I C AGIRVIM+TGD+ TA AI + I
Sbjct: 586 MEYET-DLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFG 644
Query: 705 ETS-SDDNVFTGTDLRKITDEELKDILETNKELVFARTSPLQKLRIVELYQSLDEIVAVT 763
E D +TG + + E ++ + FAR P K +IVE QS DEI A+T
Sbjct: 645 ENEEVADRAYTGREFDDLPLAEQREACR--RACCFARVEPSHKSKIVEYLQSYDEITAMT 702
Query: 764 GDGVNDAPALKKADIGIAMGITGSEVSKQTADMILMDDNFASIVLGIEEGRLIFDNLKKS 823
GDGVNDAPALKKA+IGIAMG +G+ V+K ++M+L DDNF++IV +EEGR I++N+K+
Sbjct: 703 GDGVNDAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQF 761
Query: 824 IAYILASNIPEILPFLFYIFLGIPLPVSTVTVLCIDLGTDMWPAVSLAYEKPESNIMSRE 883
I Y+++SN+ E++ LG+P + V +L ++L TD PA +L + P+ +IM R
Sbjct: 762 IRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRP 821
Query: 884 PRNPRTDHLVGRKLVTYAYFHLGILETLAGFLTYFHVMYDAGWDPMDLLNIRKSWESNNN 943
PR+P+ + L+ L Y +G A A P + +
Sbjct: 822 PRSPK-EPLISGWLFFR-YMAIGGYVGAATVGAAAWWFMYAEDGPGVTYHQLTHFMQCTE 879
Query: 944 LEDSY 948
+
Sbjct: 880 DHPHF 884
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
ATP-binding, hydrogen ION transport, hydrolase, ION
transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Length = 885
Score = 656 bits (1694), Expect = 0.0
Identities = 190/829 (22%), Positives = 357/829 (43%), Gaps = 94/829 (11%)
Query: 102 AQLRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNV 161
+ L D+KNE +D IP+EE++ L + GL+ E + R++ GPN L +K + + +
Sbjct: 2 SSLEDIKNET-VDLEKIPIEEVFQQLKCSRE-GLTTQEGEDRIQIFGPNKLEEK-KESKL 58
Query: 162 YVLVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGMFSFY 221
+G+++ S ++ A+++ + P D I+ L ++ SF
Sbjct: 59 LKFLGFMWNPLSWVMEMAAIMAIALANGDGR-----PPDWQDFVGIICLL-VINSTISFI 112
Query: 222 QERKSSHITESFAKMIPTRATVIRNGSVKEIDSAGLVRGDIVLLKIGDKVPADIRLIEIQ 281
+E + + + + + V+R+G E ++A LV GDIV +K+GD +PAD RL+E
Sbjct: 113 EENNAGNAAAALMAGLAPKTKVLRDGKWSEQEAAILVPGDIVSIKLGDIIPADARLLEGD 172
Query: 282 DLKAENSSLTGEVEPVTCTLGATNSFAVESRNLVFFSTNLVSGSGKGVVILTGSNTVMGK 341
LK + S+LTGE PVT G VF + G + VVI TG +T GK
Sbjct: 173 PLKVDQSALTGESLPVTKHPG----------QEVFSGSTCKQGEIEAVVIATGVHTFFGK 222
Query: 342 IAGLTNRLEKKTTPIEQEVQHFMR-LISMWALTLGAICFLLALYIGYNWLNACVYVIGII 400
A L + + ++ + I A+ + ++ + + ++ ++
Sbjct: 223 AAHLVDS-TNQVGHFQKVLTAIGNFCICSIAIGMVIEIIVMYPIQRRKYRDGIDNLLVLL 281
Query: 401 VANVPEGLLATLTVSLTLTAKRLASKNCIVRRLQTVETLGSIRTICTDKTGTLTQNKMTV 460
+ +P + L+V++ + + RL+ + I +R+ +E + + +C+DKTGTLT NK++V
Sbjct: 282 IGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSV 341
Query: 461 LHLSFNREIYHVKNGVDVDIQNFETNTTYKTLVRAACLCSKAEFEPNQDNIPMRERKASG 520
KN V+V + E + ++ A + S+ E +
Sbjct: 342 -----------DKNLVEVFCKGVEKD----QVLLFAAMASRVE---------------NQ 371
Query: 521 DATEVGILHFIQPRIKSIQDVRNTFPKVTEVPFNSLNKFHLTVHFSPLNKYFLLMKGAPE 580
DA + ++ + ++ R +V +PFN ++K + + + KGAPE
Sbjct: 372 DAIDAAMVGM----LADPKEARAGIREVHFLPFNPVDKRTALTYIDGSGNWHRVSKGAPE 427
Query: 581 VIMERCTTMMAESDKEAFLTAEKKYELEDKIKLFASKGERVLAFADLHLGQNNFPVNFK- 639
I+E + + ++ I +A +G R LA A +
Sbjct: 428 QILELAK-----------ASNDLSKKVLSIIDKYAERGLRSLAVA------------RQV 464
Query: 640 FSTDPMNFPSSGFRLIGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIK 699
P + + +GL+ L+DPPR + I G+ V M+TGD K +
Sbjct: 465 VPEKTKESPGAPWEFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRR 524
Query: 700 CHILSETSSDDNVFTGTDLRKITDEELKDILETNKELVFARTSPLQKLRIVELYQSLDEI 759
+ + + + +++++E FA P K IV+ Q I
Sbjct: 525 LGMGTNMYPSSALLGTHKDANLASIPVEELIEKAD--GFAGVFPEHKYEIVKKLQERKHI 582
Query: 760 VAVTGDGVNDAPALKKADIGIAMGITGSEVSKQTADMILMDDNFASIVLGIEEGRLIFDN 819
V +TGDGVNDAPALKKADIGIA+ ++ ++ +D++L + + I+ + R IF
Sbjct: 583 VGMTGDGVNDAPALKKADIGIAVA-DATDAARGASDIVLTEPGLSVIISAVLTSRAIFQR 641
Query: 820 LKKSIAYILASNIPEILPFLFYIFLGIPLPVSTVTVLCIDLGTDMWPAVSLAYEKPESNI 879
+K Y ++ I + F+ + S VL I + D ++++ ++ +
Sbjct: 642 MKNYTIYAVSITIRIVFGFMLIALIW-EFDFSAFMVLIIAILNDG-TIMTISKDRVKP-- 697
Query: 880 MSREPRNPRTDHLVGRKLVTYAYFHLGILETLAGFLTYFHVMYDAGWDP 928
S P + + + +V LG + + + ++ + +
Sbjct: 698 -SPTPDSWKLKEIFATGVV------LGGYQAIMTVIFFW-AAHKTDFFS 738
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 633 bits (1636), Expect = 0.0
Identities = 202/896 (22%), Positives = 373/896 (41%), Gaps = 104/896 (11%)
Query: 45 MSSATKNNYFEKLSTQSKTFFNTRKASLEKKSHPRFVLDCSKKSILRFIHKEKEMDVAQL 104
M+ + + + F+ + A V D + I I + D
Sbjct: 1 MADHSASGAPALSTNIESGKFDEKAAEAAAYQPKPKVEDDEDEDIDALIEDLESHDGHDA 60
Query: 105 RDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYVL 164
+ + E + E++ L T GL+ EV +R K G N + ++ + N+
Sbjct: 61 EEEEEEATPGGGRVVPEDM---LQTDTRVGLTSEEVVQRRRKYGLNQMKEE-KENHFLKF 116
Query: 165 VGYIFRG-FSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGMFSFYQE 223
+G+ F G ++ A+L+ E D G+I L + + F QE
Sbjct: 117 LGF-FVGPIQFVMEGAAVLAAGL---------EDWVD---FGVICGLLLLN-AVVGFVQE 162
Query: 224 RKSSHITESFAKMIPTRATVIRNGSVKEIDSAGLVRGDIVLLKIGDKVPADIRLIEIQD- 282
++ I + K + +A V+R+G++KEI++ +V GDI+ ++ G +PAD R++
Sbjct: 163 FQAGSIVDELKKTLALKAVVLRDGTLKEIEAPEVVPGDILQVEEGTIIPADGRIVTDDAF 222
Query: 283 LKAENSSLTGEVEPVTCTLGATNSFAVESRNLVFFSTNLVSGSGKGVVILTGSNTVMGKI 342
L+ + S+LTGE V G + VF S+ + G V+ TG NT +G+
Sbjct: 223 LQVDQSALTGESLAVDKHKG----------DQVFASSAVKRGEAFVVITATGDNTFVGRA 272
Query: 343 AGLTNRLEKKTTPIEQEVQHFMRLISMWALTLGAICFLLALYIGYNWLNACVYVIGIIVA 402
A L N + + + ++ + + I ++ + Y + + + I +
Sbjct: 273 AALVNAASGGSGHFTEVLNGIGTILLILVIFTLLIVWVSSFYRSNPIVQILEFTLAITII 332
Query: 403 NVPEGLLATLTVSLTLTAKRLASKNCIVRRLQTVETLGSIRTICTDKTGTLTQNKMTVLH 462
VP GL A +T ++ + A LA K IV++L +E+L + +C+DKTGTLT+NK+++
Sbjct: 333 GVPVGLPAVVTTTMAVGAAYLAKKKAIVQKLSAIESLAGVEILCSDKTGTLTKNKLSL-- 390
Query: 463 LSFNREIYHVKNGVDVDIQNFETNTTYKTLVRAACLCSKAEFEPNQDNIPMRERKASGDA 522
+ Y V GVD + L+ ACL + + K DA
Sbjct: 391 ----HDPYTV-AGVDPE-----------DLMLTACLAASRK-------------KKGIDA 421
Query: 523 TEVGILHFIQPRIKSIQDVRNTFPKVTEVPFNSLNKFHLTVHFSPLNKYFLLMKGAPEVI 582
+ L ++ + V + + + PF+ ++K + V SP + +KGAP +
Sbjct: 422 IDKAFLKSLK-YYPRAKSVLSKYKVLQFHPFDPVSKKVVAVVESPQGERITCVKGAPLFV 480
Query: 583 MERCTTMMAESDKEAFLTAEKKYELEDKIKLFASKGERVLAFADLHLGQNNFPVNFKFST 642
++ ++ + E ++K+ FA++G R L A K
Sbjct: 481 LKTVE-------EDHPIPEEVDQAYKNKVAEFATRGFRSLGVA------------RKRGE 521
Query: 643 DPMNFPSSGFRLIGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHI 702
+G++ DPPR + G+ + M+TGD A+ + + +
Sbjct: 522 GSWEI-------LGIMPCMDPPRHDTYKTVCEAKTLGLSIKMLTGDAVGIARETSRQLGL 574
Query: 703 LSETSSDDNVFTGTDLRKITDEELKDILETNKELVFARTSPLQKLRIVELYQSLDEIVAV 762
+ + + E+ D +E FA P K +VE+ Q +VA+
Sbjct: 575 GTNI-YNAERLGLGGGGDMPGSEVYDFVEAAD--GFAEVFPQHKYNVVEILQQRGYLVAM 631
Query: 763 TGDGVNDAPALKKADIGIAMGITGSEVSKQTADMILMDDNFASIVLGIEEGRLIFDNLKK 822
TGDGVNDAP+LKKAD GIA+ S+ ++ AD++ + +I+ ++ R IF +
Sbjct: 632 TGDGVNDAPSLKKADTGIAVE-GSSDAARSAADIVFLAPGLGAIIDALKTSRQIFHRMYA 690
Query: 823 SIAYILASNIPEILPFLFYIFLGIPLPVSTVTVLCIDLGTDMWPAVSLAYEKPESNIMSR 882
+ Y +A +I + FL + ++ V+ I + D+ +++AY+ S+
Sbjct: 691 YVVYRIALSI-HLEIFLGLWIAILNRSLNIELVVFIAIFADV-ATLAIAYDNAP---YSQ 745
Query: 883 EPRNPRTDHLVGRKLVTYAYFHLGILETLAGFLTYFHVMYDAGWDPMDLLNIRKSW 938
P L G ++ LG++ + ++T MY G + + N
Sbjct: 746 TPVKWNLPKLWGMSVL------LGVVLAVGTWITVT-TMYAQGENGGIVQNFGNMD 794
>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy
metal translocation; 2.20A {Sulfolobus solfataricus}
PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*
Length = 263
Score = 134 bits (339), Expect = 3e-35
Identities = 42/169 (24%), Positives = 79/169 (46%), Gaps = 33/169 (19%)
Query: 653 RLIGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHILSETSSDDNV 712
I ++ D PRP + D ++ G+++I+++GD K ++ + +I
Sbjct: 126 EPIASFNISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNI---------- 175
Query: 713 FTGTDLRKITDEELKDILETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGDGVNDAPA 772
E ++ SP K+RI+E + V + GDGVNDA A
Sbjct: 176 ----------QE------------YYSNLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAA 213
Query: 773 LKKADIGIAMGITGSEVSKQTADMILMDDNFASIVLGIEEGRLIFDNLK 821
L AD+ +AMG G ++SK AD+IL+ ++ +++ I+ + + + +
Sbjct: 214 LALADVSVAMG-NGVDISKNVADIILVSNDIGTLLGLIKNRKRLSNAIP 261
Score = 37.4 bits (88), Expect = 0.013
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 437 ETLGSIRTICTDKTGTLTQNKMTV 460
E + I TI +KTGTLT V
Sbjct: 23 EKIKEIDTIIFEKTGTLTYGTPIV 46
>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain,
copper(II) transporter, MEMB protein, hydrolase; 1.59A
{Archaeoglobus fulgidus} PDB: 3sky_A*
Length = 280
Score = 127 bits (322), Expect = 9e-33
Identities = 49/169 (28%), Positives = 80/169 (47%), Gaps = 34/169 (20%)
Query: 653 RLIGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHILSETSSDDNV 712
+ G+I+L D RP +AI GI+ +M+TGD+ AK +A + +
Sbjct: 134 EVSGVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGL---------- 183
Query: 713 FTGTDLRKITDEELKDILETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGDGVNDAPA 772
D+ FA P +K V+ Q + A+ GDGVNDAPA
Sbjct: 184 ----------DD------------YFAEVLPHEKAEKVKEVQQ-KYVTAMVGDGVNDAPA 220
Query: 773 LKKADIGIAMGITGSEVSKQTADMILMDDNFASIVLGIEEGRLIFDNLK 821
L +AD+GIA+G G++V+ +TAD++L+ ++ + +E R +
Sbjct: 221 LAQADVGIAIG-AGTDVAVETADIVLVRNDPRDVAAIVELSRKTYSKFH 268
Score = 36.3 bits (85), Expect = 0.037
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 437 ETLGSIRTICTDKTGTLTQNKMTV 460
E ++ + DKTGTLT+ + V
Sbjct: 8 ERAKDLQAVIFDKTGTLTEGRFGV 31
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding,
hydrolase, ION transp magnesium, Cu+, membrane,
metal-binding; 3.20A {Legionella pneumophila subsp}
Length = 736
Score = 133 bits (336), Expect = 4e-32
Identities = 61/216 (28%), Positives = 100/216 (46%), Gaps = 46/216 (21%)
Query: 653 RLIGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHILSETSSDDNV 712
+ + L+ + DP + + P+ I ++GI ++M+TGD TA+A+A I
Sbjct: 544 KTVALLVVEDPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVAGTLGI---------- 593
Query: 713 FTGTDLRKITDEELKDILETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGDGVNDAPA 772
+ V A P K RIV + IVA+ GDGVNDAPA
Sbjct: 594 ----------KK------------VVAEIMPEDKSRIVSELKDKGLIVAMAGDGVNDAPA 631
Query: 773 LKKADIGIAMGITGSEVSKQTADMILMDDNFASIVLGIEEGRLIFDNLKKSIAYILASNI 832
L KADIGIAMG TG++V+ ++A + L+ + I N+++++ + N+
Sbjct: 632 LAKADIGIAMG-TGTDVAIESAGVTLLHGDLRGIAKARRLSESTMSNIRQNLFFAFIYNV 690
Query: 833 PEILPF---LFYIFLGIPL-PV--------STVTVL 856
+ P + Y G+ L P+ S+V+V+
Sbjct: 691 LGV-PLAAGVLYPLTGLLLSPMIAAAAMALSSVSVI 725
Score = 51.0 bits (123), Expect = 1e-06
Identities = 49/227 (21%), Positives = 101/227 (44%), Gaps = 27/227 (11%)
Query: 243 VIRNGSVKEIDSAGLVRGDIVLLKIGDKVPADIRLIEIQDLKAENSSLTGEVEPVTCTLG 302
+ +GS +E+ + GD++ ++ G+K+P D + E + E S +TGE PV
Sbjct: 230 IKEDGSEEEVSLDNVAVGDLLRVRPGEKIPVDGEVQEGRSFVDE-SMVTGEPIPVAKEAS 288
Query: 303 ATNSFAVESRNLVFFSTNLVSGSGKGVVILT--GSNTVMGKIAGLTNRLEKKTTPIEQEV 360
A V +T ++ +G V+ GS+T++ +I + + ++ PI
Sbjct: 289 AK----------VIGAT--INQTGSFVMKALHVGSDTMLARIVQMVSDAQRSRAPI---- 332
Query: 361 QHFMRLISMW----ALTLGAICFLLALYIGY--NWLNACVYVIGIIVANVPEGL-LATLT 413
Q +S W + + + F++ +G + + +++ P L LAT
Sbjct: 333 QRLADTVSGWFVPAVILVAVLSFIVWALLGPQPALSYGLIAAVSVLIIACPCALGLATPM 392
Query: 414 VSLTLTAKRLASKNCIVRRLQTVETLGSIRTICTDKTGTLTQNKMTV 460
S+ + + A +++ + +E + + T+ DKTGTLT+ +
Sbjct: 393 -SIMVGVGKGAQSGVLIKNAEALERMEKVNTLVVDKTGTLTEGHPKL 438
>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell
membrane, copper transport, hydrolase, ION transport,
magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus
fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I
Length = 287
Score = 123 bits (312), Expect = 2e-31
Identities = 51/169 (30%), Positives = 87/169 (51%), Gaps = 34/169 (20%)
Query: 653 RLIGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHILSETSSDDNV 712
R+ G+I++ D + + A+ + GI+V M+TGD+ +A+AI+ + ++
Sbjct: 153 RVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL---------- 202
Query: 713 FTGTDLRKITDEELKDILETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGDGVNDAPA 772
D V A P QK V+ Q+ E+VA GDG+NDAPA
Sbjct: 203 ----------DL------------VIAEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPA 239
Query: 773 LKKADIGIAMGITGSEVSKQTADMILMDDNFASIVLGIEEGRLIFDNLK 821
L +AD+GIA+G +GS+V+ ++ D++L+ D+ +V I+ R +K
Sbjct: 240 LAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
Score = 38.2 bits (90), Expect = 0.010
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 437 ETLGSIRTICTDKTGTLTQNKMTV 460
E + + DKTGTLT+ K V
Sbjct: 27 EVAEKVTAVIFDKTGTLTKGKPEV 50
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter,
adenosine triphosph archaeal proteins, cation transport
proteins; 10.00A {Archaeoglobus fulgidus}
Length = 645
Score = 129 bits (327), Expect = 4e-31
Identities = 63/216 (29%), Positives = 107/216 (49%), Gaps = 47/216 (21%)
Query: 653 RLIGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHILSETSSDDNV 712
R+ G+I++ D + + A+ + GI+V M+TGD+ +A+AI+ + ++
Sbjct: 447 RVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL---------- 496
Query: 713 FTGTDLRKITDEELKDILETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGDGVNDAPA 772
D V A P QK V+ Q+ E+VA GDG+NDAPA
Sbjct: 497 ----------DL------------VIAEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPA 533
Query: 773 LKKADIGIAMGITGSEVSKQTADMILMDDNFASIVLGIEEGRLIFDNLKKSIAYILASNI 832
L +AD+GIA+G +GS+V+ ++ D++L+ D+ +V I+ R +K++I + L N+
Sbjct: 534 LAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWALIYNV 592
Query: 833 PEILPF---LFYIFLGIPL-PV--------STVTVL 856
I P L Y G+ P S+V+V+
Sbjct: 593 ILI-PAAAGLLYPIFGVVFRPEFAGLAMAMSSVSVV 627
Score = 62.9 bits (154), Expect = 3e-10
Identities = 58/231 (25%), Positives = 99/231 (42%), Gaps = 26/231 (11%)
Query: 238 PTRATVIRNGSVKEIDSAGLVRGDIVLLKIGDKVPADIRLIEIQDLKAENSSLTGEVEPV 297
A VIR+G + + GDIV+++ G+K+P D ++E + E S ++GE PV
Sbjct: 132 AKTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESYVDE-SMISGEPVPV 190
Query: 298 TCTLGATNSFAVESRNLVFFSTNLVSGSGKGVVILT--GSNTVMGKIAGLTNRLEKKTTP 355
+ G VF +T ++ +G + T G T++ +I L P
Sbjct: 191 LKSKGDE----------VFGAT--INNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPP 238
Query: 356 IEQEVQHFMRLISMW----ALTLGAICFLLALYIGY-NWLNACVYVIGIIVANVPEGL-L 409
I Q + + L + F+ +I + L A +I ++V P L
Sbjct: 239 I----QRLADKVVAYFIPTVLLVAISAFIYWYFIAHAPLLFAFTTLIAVLVVACPCAFGL 294
Query: 410 ATLTVSLTLTAKRLASKNCIVRRLQTVETLGSIRTICTDKTGTLTQNKMTV 460
AT T +LT+ + A +++ +E + + DKTGTLT+ K V
Sbjct: 295 ATPT-ALTVGMGKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEV 344
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter,
adenosine triphosph archaeal proteins, cation transport
proteins; 10.00A {Archaeoglobus fulgidus}
Length = 723
Score = 124 bits (314), Expect = 2e-29
Identities = 63/216 (29%), Positives = 107/216 (49%), Gaps = 47/216 (21%)
Query: 653 RLIGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHILSETSSDDNV 712
R+ G+I++ D + + A+ + GI+V M+TGD+ +A+AI+ + ++
Sbjct: 525 RVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL---------- 574
Query: 713 FTGTDLRKITDEELKDILETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGDGVNDAPA 772
D V A P QK V+ Q+ E+VA GDG+NDAPA
Sbjct: 575 ----------DL------------VIAEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPA 611
Query: 773 LKKADIGIAMGITGSEVSKQTADMILMDDNFASIVLGIEEGRLIFDNLKKSIAYILASNI 832
L +AD+GIA+G +GS+V+ ++ D++L+ D+ +V I+ R +K++I + L N+
Sbjct: 612 LAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWALIYNV 670
Query: 833 PEILPF---LFYIFLGIPL-PV--------STVTVL 856
I P L Y G+ P S+V+V+
Sbjct: 671 ILI-PAAAGLLYPIFGVVFRPEFAGLAMAMSSVSVV 705
Score = 63.7 bits (156), Expect = 2e-10
Identities = 58/231 (25%), Positives = 99/231 (42%), Gaps = 26/231 (11%)
Query: 238 PTRATVIRNGSVKEIDSAGLVRGDIVLLKIGDKVPADIRLIEIQDLKAENSSLTGEVEPV 297
A VIR+G + + GDIV+++ G+K+P D ++E + E S ++GE PV
Sbjct: 210 AKTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESYVDE-SMISGEPVPV 268
Query: 298 TCTLGATNSFAVESRNLVFFSTNLVSGSGKGVVILT--GSNTVMGKIAGLTNRLEKKTTP 355
+ G VF +T ++ +G + T G T++ +I L P
Sbjct: 269 LKSKGDE----------VFGAT--INNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPP 316
Query: 356 IEQEVQHFMRLISMW----ALTLGAICFLLALYIGY-NWLNACVYVIGIIVANVPEGL-L 409
I Q + + L + F+ +I + L A +I ++V P L
Sbjct: 317 I----QRLADKVVAYFIPTVLLVAISAFIYWYFIAHAPLLFAFTTLIAVLVVACPCAFGL 372
Query: 410 ATLTVSLTLTAKRLASKNCIVRRLQTVETLGSIRTICTDKTGTLTQNKMTV 460
AT T +LT+ + A +++ +E + + DKTGTLT+ K V
Sbjct: 373 ATPT-ALTVGMGKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEV 422
>3gwi_A Magnesium-transporting ATPase, P-type 1; P-type ATPase, nucleotide
binding, ATP binding, MGTA, membra protein, cell inner
membrane; 1.60A {Escherichia coli}
Length = 170
Score = 90.3 bits (225), Expect = 4e-21
Identities = 28/180 (15%), Positives = 61/180 (33%), Gaps = 32/180 (17%)
Query: 490 KTLVRAACLCSKAEFEPNQDNIPMRERKASGDATEVGILHFIQPRIKSIQDVRNTFPKVT 549
+ ++ +A L S + + + +L +S + + + + K+
Sbjct: 16 ERVLHSAWLNSHYQ-------------TGLKNLLDTAVLEGTDE--ESARSLASRWQKID 60
Query: 550 EVPFNSLNKFHLTVHFSPLNKYFLLMKGAPEVIMERCTTMMAESDKEAFLTAEKKYELED 609
E+PF+ + V + L+ KGA + I+ C+ + + + L +++
Sbjct: 61 EIPFDFERRRMSVVVAENTEHHQLVCKGALQEILNVCSQVR-HNGEIVPLDDIMLRKIKR 119
Query: 610 KIKLFASKGERVLAFADLHLGQNNFPVNFK-FSTDPMNFPS---SGFRLIGLISLYDPPR 665
+G RV+A A K ++ S L G I+ D
Sbjct: 120 VTDTLNRQGLRVVAVA------------TKYLPAREGDYQRADESDLILEGYIAFLDHHH 167
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 68.3 bits (166), Expect = 9e-12
Identities = 92/629 (14%), Positives = 165/629 (26%), Gaps = 222/629 (35%)
Query: 462 HLSF--------NREIYHV-----KNGVDV-DIQNFE----TNTTYKTLVRAA------- 496
H+ F ++I V + D D+Q+ + ++ +
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 497 ----CLCSKAE-----F-----EPN----QDNIPMRERKASGDATEVGILHFIQPRIKSI 538
L SK E F N I +R+ S +I+ R +
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM-----YIEQRDRLY 120
Query: 539 QDVRNTFPK--VT-EVPFNSLNKFHLTVHFSPLNKYFLL--MKGAPEVIMERCTTMMAES 593
D + F K V+ P+ L + L P K L+ + G S
Sbjct: 121 NDNQ-VFAKYNVSRLQPYLKLRQ-ALL-ELRP-AKNVLIDGVLG---------------S 161
Query: 594 DKEAFLTAEKKYELEDKIKLFASKGERVLAFADLHLGQNNFPV---NFKFSTDPMNFPSS 650
K + + V + + +F + N K P
Sbjct: 162 GKTW-VALD------------------VCLSYKVQC-KMDFKIFWLNLKNCNSPET---- 197
Query: 651 GFRLIGLISLY---DPPRPAVPDAIDA----CH--KAGIRVIMVTGDHP-C--------- 691
L L L DP + D H +A +R ++ + + C
Sbjct: 198 --VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255
Query: 692 --TAKAIAIKCHILSETSSDDNVFTGTDLRKITDEELKDILETNKELVFARTSPLQKLRI 749
A + C IL T+ V T L T
Sbjct: 256 AKAWNAFNLSCKILL-TTRFKQVTDFLSAATTTHISLDHHSMT----------------- 297
Query: 750 VELYQSLDEIVAVTGDGVNDAPALKKADIGIAMGITGSEVSKQTADMILMDDNFASIVLG 809
+ + ++ D P + I + D + DN+
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR----DGLATWDNWK----- 348
Query: 810 IEEGRLIFDNLKKSIAYILASNIPEILPFLFY---IF-LGIPLPVSTVTVLCIDLGTDMW 865
+ D L I L P +F +F +P +L + +W
Sbjct: 349 ----HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI---LLSL-----IW 396
Query: 866 PAV---------------SLAYEKPESNIMS---------REPRNPRTDHLVGRKLVT-- 899
V SL ++P+ + +S + N H R +V
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH---RSIVDHY 453
Query: 900 ------------------YAYFHLGI-LETL--AGFLTYFHVMY-DAGWDPMDLLNIRKS 937
Y Y H+G L+ + +T F +++ D + + + +
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA 513
Query: 938 WES----NNNLED--SYHKMWTRTERTWT 960
W + N L+ Y + +
Sbjct: 514 WNASGSILNTLQQLKFYKPYICDNDPKYE 542
Score = 49.9 bits (118), Expect = 4e-06
Identities = 105/658 (15%), Positives = 202/658 (30%), Gaps = 200/658 (30%)
Query: 2 KDETTV--FQEA--QPPYD----SKRNSSRG-SRKKKSWSSKHNTTKDVNIYMSSATKNN 52
K E V F E + Y + R S + + + + +Y N
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD-----RLY----NDNQ 124
Query: 53 YFEKLS-TQSKTFFNTRKASLEKKSHPRFVLD----CSK----KSILRFIHKEKEMD--V 101
F K + ++ + + R+A LE + ++D K + + +MD +
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184
Query: 102 AQLRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNV 161
L +LKN + L L++L +D P+ + D +++ RI+++
Sbjct: 185 FWL-NLKNCNSPETVLEMLQKLLYQID--PN--WTSRS-------DHSSNIKL--RIHSI 230
Query: 162 YVLVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLW-LGIILA--LTC--IVTG 216
+ R + + LL +L N+ A L+C ++T
Sbjct: 231 Q---AELRRLLKSKPYENCLL-----VL----------LNVQNAKAWNAFNLSCKILLT- 271
Query: 217 MFSFYQERKSSHITESFAKMIPTRATVI-RNGSVKEIDSAGLVRGDIVLLKIGDKVPADI 275
R +T+ + T ++ + ++ + L LLK D
Sbjct: 272 ------TRFKQ-VTDFLSAATTTHISLDHHSMTLTPDEVKSL------LLKYLD------ 312
Query: 276 RLIEIQDLKAENSSLTGEVEPVTCTLGATNSFAVESRNLVFFSTNLVSGSGKGVVILTGS 335
QDL E + P ++ A R+ + N K V
Sbjct: 313 --CRPQDLPREVLT----TNPRRLSI-----IAESIRDGLATWDNW-----KHV----NC 352
Query: 336 NTVMGKIAGLTNRLEKKTTPIEQEVQHFMRLISMWALTLGAICFLLALYIGYNWLNACVY 395
+ + I N LE P E + F RL ++ F +
Sbjct: 353 DKLTTIIESSLNVLE----PAEYR-KMFDRL---------SV-FP------PS------- 384
Query: 396 VIGIIVANVPEGLLATL-----TVSLTLTAKRLASKNCIVRRLQTVETLGSIRTICTDKT 450
A++P LL+ + + + +L + + ++ + E+ SI +I +
Sbjct: 385 ------AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK--ESTISIPSIYLEL- 435
Query: 451 GTLTQNKMTVLHLSFNREIYHVKNGVDVDIQNFETNTTYKTLVRAACLCSKAEFEPNQDN 510
+ LH R I VD Y S P D
Sbjct: 436 -KVKLENEYALH----RSI------VD----------HYNIP---KTFDSDDLIPPYLDQ 471
Query: 511 -----IP--MRERKASGDATEVGI----LHFIQPRIKSIQDVRNTFPKVTEVPFNSLNKF 559
I ++ + T + F++ +I+ N + L +
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT-LQQLKFY 530
Query: 560 --HLTVHFSPLNKYFL------LMKGAPEVIMERCT-----TMMAESDKEAFLTAEKK 604
++ + P + + L K +I + T +MAE + F A K+
Sbjct: 531 KPYICDN-DPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDE-AIFEEAHKQ 586
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 61.6 bits (149), Expect = 1e-09
Identities = 97/612 (15%), Positives = 175/612 (28%), Gaps = 201/612 (32%)
Query: 173 SALLWFGAL-L--SFLAYLLEAETN---EEKPQDNLWLGIILALTCIVTGMFSFYQERKS 226
+F A L F L E +++P L + F
Sbjct: 23 PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL---VG---------KF-----L 65
Query: 227 SHITESFAKMIPTRATVIRNGSVKEIDSAGLVRGDI-----VLLKIGDKVPAD----IR- 276
+++ + + N + E ++ L DI LL+ D I+
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN 125
Query: 277 ------LIEIQDLKAENSSL-----TGEVEPVTCTL----GATNSFAVESRNLVFFSTNL 321
+ + K NS+L G + + G T+ + E R+L + T
Sbjct: 126 YITARIMAKRPFDKKSNSALFRAVGEGNAQ--LVAIFGGQGNTDDYFEELRDL--YQT-- 179
Query: 322 VSGSGKGVVILTGSNTVMGKIAGLTNRLEKKTTPIEQEVQHFMRLISMW----------- 370
+V ++ A + L + T E+ + ++ W
Sbjct: 180 ----YHVLV-----GDLIKFSAETLSELIRTTLDAEKVFTQGLNILE-WLENPSNTPDKD 229
Query: 371 -----ALTLGAICFL-LALYI------GYNWLNACVYVIGIIVANVPEGLLATLTVSLTL 418
++ I + LA Y+ G+ Y+ G +GL+ + ++ T
Sbjct: 230 YLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG--HSQGLVTAVAIAETD 287
Query: 419 TAKRL--ASKNCI-------VRRLQTVETLG---SIRTICTDKT-GT---------LTQN 456
+ + + + I VR + SI + G LTQ
Sbjct: 288 SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQE 347
Query: 457 KMTVL------HLSFNREIY-HVKNGVDVDIQNF------ETNTTYKTLVRAACLCSKAE 503
++ HL +++ + NG N ++ +R A KA
Sbjct: 348 QVQDYVNKTNSHLPAGKQVEISLVNGAK----NLVVSGPPQSLYGLNLTLRKA----KAP 399
Query: 504 FEPNQDNIPMRERKASGDATEVGILHFIQPRIKSIQDVRNTFPKVTEVPFNSLNKFHLTV 563
+Q IP ERK + N F V P FH
Sbjct: 400 SGLDQSRIPFSERK---------------LKFS------NRFLPVA-SP------FH--- 428
Query: 564 HFSPLNKYFLLMKGAPEVIMERCTTMMAESDKEAFLTAEKK---YELEDKIKLFASKGER 620
S L+ A ++I + + +F + + Y+ D L G
Sbjct: 429 --SH------LLVPASDLINKD-----LVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSI 475
Query: 621 VLAFADLHLGQNNFPVNFKFSTDP-----MNF-PSSGFRLIGLISLYDPPRPAVPDAIDA 674
D + PV ++ +T ++F P L L D
Sbjct: 476 SERIVDCII---RLPVKWETTTQFKATHILDFGPGGASGLGVLTH----------RNKDG 522
Query: 675 CHKAGIRVIMVT 686
G+RVI+
Sbjct: 523 T---GVRVIVAG 531
Score = 56.6 bits (136), Expect = 4e-08
Identities = 61/305 (20%), Positives = 94/305 (30%), Gaps = 104/305 (34%)
Query: 513 MRERKASGDATEV---GILHFIQPRIKSIQDVRNTFPKVTEVPFNSLNKFHLTVHFSP-- 567
M K S A +V HF SI D+ P +LT+HF
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPV------------NLTIHFGGEK 1680
Query: 568 ---LNKYFLLMKGAP------------EVIMERCTTMMAESDKE----------AFLTAE 602
+ + + M + I E T+ S+K A E
Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLME 1740
Query: 603 -------KKYELEDKIKLFA--SKGE--------RVLAFAD-LHLGQNNFPVNF--KFST 642
K L FA S GE V++ + + V +
Sbjct: 1741 KAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEV------VFYRGMTMQ 1794
Query: 643 DPMNFPSSGFRLIGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHI 702
+ G G+I++ +P R A + +A RV TG I
Sbjct: 1795 VAVPRDELGRSNYGMIAI-NPGRVAASFSQEALQYVVERVGKRTGW-LVE---IV----- 1844
Query: 703 LSETSSDDN------VFTGTDLRKITDEELKDILETNKELVFARTSPLQKLRIVELYQS- 755
+ N V G DLR + + + ++L K LQK+ I+EL +S
Sbjct: 1845 ------NYNVENQQYVAAG-DLRAL--DTVTNVLNFIK---------LQKIDIIELQKSL 1886
Query: 756 -LDEI 759
L+E+
Sbjct: 1887 SLEEV 1891
Score = 46.6 bits (110), Expect = 5e-05
Identities = 86/575 (14%), Positives = 169/575 (29%), Gaps = 227/575 (39%)
Query: 380 LLALYIGYNWLNACVYVIGIIVANVPEGLLATLTVSLT-LTAKRLASKNCIVRRLQTVET 438
L+ ++G YV ++ + L + LT L + +
Sbjct: 60 LVGKFLG--------YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND--------IHA 103
Query: 439 LGSIRTICTDKTGTLTQNKMTVLHLSFNREIYHVKNGVDVDIQNFETNTTYKTLVRAACL 498
L + + TL + K I+N+ A +
Sbjct: 104 L--AAKLLQENDTTLVKTKEL--------------------IKNY-----I-----TARI 131
Query: 499 CSKAEFEPNQDNIPMRERKASGDATEVGILHFIQPRIKSI---QDVRNTFPKVTEVPFNS 555
+K F+ ++ R G+A ++ +I Q T+ F
Sbjct: 132 MAKRPFDKKSNSALFRA-VGEGNA-----------QLVAIFGGQG-------NTDDYFEE 172
Query: 556 LNKFHLTVHFSPLNKYFLLMKGAPEVIMERCTTMMAESDKEAFLTAEKKYELEDKIKLFA 615
L + T + L + + E + ++ + AEK +
Sbjct: 173 LRDLYQT--YHVLVGDLI------KFSAETLSELIRTTLD-----AEKVF---------- 209
Query: 616 SKGERVLAFADLHLGQNNFPVNFKFSTDPMNFPSSGFRLIGLISL--YDPPRPAVPDAID 673
++G +L + L +N P + P++ P LIG+I L Y +
Sbjct: 210 TQGLNILEW--LE-NPSNTPDKDYLLSIPISCP-----LIGVIQLAHY----------VV 251
Query: 674 ACHKAG-----IRVIM--VTGDHPC-----TAKAIA-----------------------I 698
G +R + TG TA AIA +
Sbjct: 252 TAKLLGFTPGELRSYLKGATG---HSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGV 308
Query: 699 KCH------ILSETSSDDNVFTGTD-------LRKITDEEL-KDILETNKELVFARTSPL 744
+C+ L + +D++ + +T E++ + +TN L
Sbjct: 309 RCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL-----PAG 363
Query: 745 QKLRIVELYQSLDEIVAVTG-----DGVNDAPALKKADIGIAMG-ITGSE---------- 788
+++ I L +V V+G G+N KA G+ I SE
Sbjct: 364 KQVEIS-LVNGAKNLV-VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL 421
Query: 789 -VS--------KQTADMILMDDNFASIVLGIEEGRL-IFD-----NLKKSIAYILASNIP 833
V+ +D+I D ++ ++ ++ ++D +L+ L+ +I
Sbjct: 422 PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRV-----LSGSIS 476
Query: 834 EILPFLFYIFLGIPLPVSTVTVLCIDLGTDMWPAV 868
E + V + L + W
Sbjct: 477 ERI-------------VDCIIRLPVK-----WETT 493
Score = 42.3 bits (99), Expect = 8e-04
Identities = 65/377 (17%), Positives = 117/377 (31%), Gaps = 126/377 (33%)
Query: 15 YDSKRNSSRGSRKKKSWSS--KHNTTKDVNIYMSSA------TKNNYFEKLSTQSKTFFN 66
Y + R ++ KKS S+ + + + A ++YFE+L +T+
Sbjct: 126 YITARIMAKRPFDKKSNSALFRAVGEGNAQLV---AIFGGQGNTDDYFEELRDLYQTY-- 180
Query: 67 TRKASLEKKSHPRFVLDCSKKSILRFIHKEKEMDVAQLRDLKNEVDIDEHLIPLEELYSI 126
V D I E L L
Sbjct: 181 -----------HVLVGD--------LIKF-----------------SAETLSELIRTTLD 204
Query: 127 LDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYV---LVGYIFRGFSALLWFGALLS 183
+ +G L + LE P++ P K + ++ + L+G ++
Sbjct: 205 AEKVFTQG---LNILEWLE--NPSNTPDKDYLLSIPISCPLIG--------------VIQ 245
Query: 184 FLAYLLEAETNEEKPQD--NLWLGIILALTCIVTGMF--------SFYQERKSSHITESF 233
Y++ A+ P + + G +VT + SF+ + + IT F
Sbjct: 246 LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA-ITVLF 304
Query: 234 AKMIPTRAT-VIRNGSVKEIDSAGLVRGDIVLLKIGDKVPA------DIRLIEIQD-LKA 285
I R N S+ ++ + + + VP+ ++ ++QD +
Sbjct: 305 F--IGVRCYEAYPNTSL----PPSILEDSL---ENNEGVPSPMLSISNLTQEQVQDYVNK 355
Query: 286 ENSSLTGEVEPVTCTLGATNSFAVESRNLVFFSTNLVSGSGKGVVILTGSNTVMGKIAGL 345
NS L + V +L N ++NLV VSG + L GL
Sbjct: 356 TNSHLPAG-KQVEISL--VNG----AKNLV------VSGPPQS---L----------YGL 389
Query: 346 TNRLEKKTTPIEQEVQH 362
L K P + Q
Sbjct: 390 NLTLRKAKAPSGLD-QS 405
Score = 41.2 bits (96), Expect = 0.002
Identities = 112/666 (16%), Positives = 199/666 (29%), Gaps = 237/666 (35%)
Query: 237 IPTRATVIRNGSVKEIDSAGLVRGDIVLLKIGDKVPADI-----RLIE--IQDLKAENSS 289
TR + +GS+ + VLL VP +L E + L
Sbjct: 4 YSTRPLTLSHGSL-----------EHVLL-----VPTASFFIASQLQEQFNKILPEPTEG 47
Query: 290 LTGEVEPVTCTLGATNSFAVESRNLV--F--FSTNLVSGSGKG----VV----------I 331
+ EP T E LV F + ++LV S G V+
Sbjct: 48 FAADDEPTT---------PAE---LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY 95
Query: 332 LTGSN--TVMGKIAGLTNRLEKKTTPIEQEVQHFMRLISMW----------AL------- 372
L G++ + A L + ++ +++++ M AL
Sbjct: 96 LEGNDIHAL---AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEG 152
Query: 373 --TLGAI---------CF--LLALYIGYNWLNACVYVIGIIVANVPEGLLATLTVSLTLT 419
L AI F L LY Y+ L +G ++ E L+ L + TL
Sbjct: 153 NAQLVAIFGGQGNTDDYFEELRDLYQTYHVL------VGDLIKFSAE-TLSEL-IRTTLD 204
Query: 420 AKRLASKNC-IVRRLQTVET------LGSIRT----ICTDKTGTLTQ--NKMTVLH-LSF 465
A+++ ++ I+ L+ L SI I + Q + + L F
Sbjct: 205 AEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIG------VIQLAHYVVTAKLLGF 258
Query: 466 N-REIYHVKNGVDVDIQNFETNTTY-KTLVRAACLC---SKAEFEPNQDNIPMRERKASG 520
E+ G T + + LV A + S F +
Sbjct: 259 TPGELRSYLKGA----------TGHSQGLVTAVAIAETDSWESFFVSVRKA--------- 299
Query: 521 DATEVGILHFIQPRIKSIQDVRNTFPKVTEVPFNSLNKFHLTVHFSPLNKYFLLMKGAPE 580
+ +L FI R + +P + ++ S L +G P
Sbjct: 300 ----ITVLFFIGVRC---YE---AYP-------------NTSLPPSILEDSLENNEGVP- 335
Query: 581 VIMERCTTMMAESDKEAFLTAEKKYELEDKIKLFASK--GERVLAFADLHLGQNNFPVNF 638
+ M++ S+ LT E +++D + S + + + L G N V
Sbjct: 336 ------SPMLSISN----LTQE---QVQDYVNKTNSHLPAGKQVEIS-LVNGAKNLVV-- 379
Query: 639 KFSTDPMNFPSSGFRLIGLISLYDPPRPAVPDAIDACH--------KAGIRVIMVTGD-H 689
+ P P S L GL + P +D K R + V H
Sbjct: 380 ---SGP---PQS---LYGLNLTLR--KAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH 428
Query: 690 -PCTAKAIAIKCHILSETSSDD-------------NVFTGTDLRKITDEELKDILE--TN 733
A + I + ++ + F G+DLR ++ + I++
Sbjct: 429 SHLLVPASDL---INKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIR 485
Query: 734 KELVFARTSPLQKLRIVEL----YQSLDEIVAVTGDGVNDAPALKKADIGIAMGITGSEV 789
+ + T+ + I++ L + DG G+ + I +
Sbjct: 486 LPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGT-----------GVRV-IVAGTL 533
Query: 790 SKQTAD 795
D
Sbjct: 534 DINPDD 539
Score = 37.3 bits (86), Expect = 0.032
Identities = 48/269 (17%), Positives = 75/269 (27%), Gaps = 117/269 (43%)
Query: 9 QEAQPPY--------DSKRN---------SSRGSRKKK--SWSSKHNTTKDVN--IYMS- 46
EA P DS N S +++ + +K N+ + +S
Sbjct: 311 YEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISL 370
Query: 47 --SATK-------------NNYFEKLST-----QSKTFFNTRKASLEKKSHPRFVLDCSK 86
A N K QS+ F+ RK +F
Sbjct: 371 VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERK--------LKFS----- 417
Query: 87 KSILRF--I----HKEKEMDVAQ---LRDL-KNEVDID-EHL-IPLEELYSILDTHPDRG 134
RF + H + A +DL KN V + + + IP + DT
Sbjct: 418 ---NRFLPVASPFH-SHLLVPASDLINKDLVKNNVSFNAKDIQIP------VYDTF---- 463
Query: 135 LSELEVKRRLEKDGPNSLPQKYRINNVYVLVGYIFRGFSALLW-------------FGAL 181
DG + + + +V I R + W FG
Sbjct: 464 ------------DGSD--LRVLSGSISERIVDCIIR--LPVKWETTTQFKATHILDFGPG 507
Query: 182 -LSFLAYLLEAETNEEKPQDNLWLGIILA 209
S L L T+ K D + +I+A
Sbjct: 508 GASGLGVL----THRNK--DGTGVRVIVA 530
Score = 31.9 bits (72), Expect = 1.3
Identities = 34/208 (16%), Positives = 62/208 (29%), Gaps = 47/208 (22%)
Query: 112 DIDEHLI------PLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYVLV 165
+I+EH L + T P L E L+ G +
Sbjct: 1709 EINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKG-------------LIPA 1755
Query: 166 GYIFRG-----FSALLWFGALLSF--LAYLLEA---ETNEEKPQDNLWLGIILALTCIVT 215
F G ++AL ++S L ++ P+D L +
Sbjct: 1756 DATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPG 1815
Query: 216 GMFSFYQERKSSHITESFAKMIPTRATVIRNGSVKEI---DSAGL---VRGDIVLLKIGD 269
+ + + + ++ E K R G + EI + GD+ L D
Sbjct: 1816 RVAASFSQEALQYVVERVGK---------RTGWLVEIVNYNVENQQYVAAGDLRAL---D 1863
Query: 270 KVPADIRLIEIQDLKAENSSLTGEVEPV 297
V + I++Q + + +E V
Sbjct: 1864 TVTNVLNFIKLQKIDIIELQKSLSLEEV 1891
>2fea_A 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase;
2633731, structural genomics, joint center for
structural GE JCSG; HET: MSE; 2.00A {Bacillus subtilis}
SCOP: c.108.1.20
Length = 236
Score = 54.8 bits (132), Expect = 3e-08
Identities = 14/119 (11%), Positives = 38/119 (31%), Gaps = 8/119 (6%)
Query: 663 PPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHILSETSSDDNVFTGTDLRKIT 722
R + + ++ I +++G +L D ++
Sbjct: 77 KIREGFREFVAFINEHEIPFYVISGGMDFFVY------PLLEGIVEKDRIYC-NHA-SFD 128
Query: 723 DEELKDILETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGDGVNDAPALKKADIGIA 781
++ + + + + K ++ ++ + + GD V D A K +D+ A
Sbjct: 129 NDYIHIDWPHSCKGTCSNQCGCCKPSVIHELSEPNQYIIMIGDSVTDVEAAKLSDLCFA 187
>4eze_A Haloacid dehalogenase-like hydrolase; magnesium binding site,
enzyme function initiativ; 2.27A {Salmonella enterica
subsp}
Length = 317
Score = 54.4 bits (131), Expect = 6e-08
Identities = 27/123 (21%), Positives = 45/123 (36%), Gaps = 19/123 (15%)
Query: 663 PPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHILSETS----SDDNVFTGTDL 718
P + + G + +++G + + + + S DNV T
Sbjct: 179 TLSPGLLTILPVIKAKGFKTAIISGGLDIFTQRLKARYQLDYAFSNTVEIRDNVLTDNIT 238
Query: 719 RKITDEELKDILETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGDGVNDAPALKKADI 778
I + K +T +L +L I + + I+A GDG ND P L+ A
Sbjct: 239 LPIMNAANK--KQTLVDLA-------ARLNI-----ATENIIAC-GDGANDLPMLEHAGT 283
Query: 779 GIA 781
GIA
Sbjct: 284 GIA 286
>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine
phosphatase, protein structure initiative, structural
genomics; 2.40A {Helicobacter pylori}
Length = 217
Score = 52.2 bits (126), Expect = 1e-07
Identities = 22/123 (17%), Positives = 36/123 (29%), Gaps = 19/123 (15%)
Query: 663 PPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIA----IKCHILSETSSDDNVFTGTDL 718
P + + A + +V+ +G + + +++ G
Sbjct: 75 PLFEGALELVSALKEKNYKVVCFSGGFDLATNHYRDLLHLDAAFSNTLIVENDALNGLVT 134
Query: 719 RKITDEELKDILETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGDGVNDAPALKKADI 778
+ K E L + L I S + V GDG ND K A I
Sbjct: 135 GHMMFSHSK--GEMLLVLQ-------RLLNI-----SKTNTLVV-GDGANDLSMFKHAHI 179
Query: 779 GIA 781
IA
Sbjct: 180 KIA 182
>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate
dehalogenase enzyme superfamily, phosphohydrol
hydrolase; 1.82A {Bacteroides thetaiotaomicron}
Length = 268
Score = 51.0 bits (123), Expect = 6e-07
Identities = 31/164 (18%), Positives = 55/164 (33%), Gaps = 37/164 (22%)
Query: 664 PRPAVPDAIDACHKAGIRVIMVTGD-------HPCTAKAIAIKCHILSETSSDDNVFTGT 716
P +++ + V + + P + I H + + +F
Sbjct: 93 PAQDFRKSMELAREFDFAVALELNEGVFVNRLTPTVEQIAGIVEHPVPPVVDIEEMFERK 152
Query: 717 DLRKI----TDEELKDILETNKELVFARTSP-------------------LQKLRIVELY 753
+ ++ +E + ++ L R P R+
Sbjct: 153 ECCQLCFYFDEEAEQKVMPLLSGLSATRWHPLFADVNVAGTSKATGLSLFADYYRV---- 208
Query: 754 QSLDEIVAVTGDGVNDAPALKKADIGIAMGITGSEVSKQTADMI 797
+ EI+A GDG ND P LK A IG+AMG +V + AD +
Sbjct: 209 -KVSEIMAC-GDGGNDIPMLKAAGIGVAMGNASEKV-QSVADFV 249
>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein,
structural genomics, unknown function; 2.60A
{Geobacillus kaustophilus} PDB: 2qyh_A
Length = 258
Score = 50.6 bits (122), Expect = 8e-07
Identities = 29/160 (18%), Positives = 54/160 (33%), Gaps = 30/160 (18%)
Query: 664 PRPAVPDAIDACHKAGIRVIMVTGDHPCTAKA------IAIKCHILSETSSDDNVFTGTD 717
R V + HK G ++ + + + +++ + D + D
Sbjct: 83 RREKVRALTEEAHKNGHPLVFMDAEKMRASIGDHPHIHVSMASLKFAHPPVDPLYYENKD 142
Query: 718 LRKI----TDEELKDILETNKELVFARTSP---------------LQKLRIVELYQ-SLD 757
+ + EE + + E F R ++ + +E
Sbjct: 143 IYQALLFCRAEEEEPYVRNYPEFRFVRWHDVSTDVLPAGGSKAEGIRMM--IEKLGIDKK 200
Query: 758 EIVAVTGDGVNDAPALKKADIGIAMGITGSEVSKQTADMI 797
++ A GDG+ND L G+AMG EV K+ AD +
Sbjct: 201 DVYAF-GDGLNDIEMLSFVGTGVAMGNAHEEV-KRVADFV 238
>3n28_A Phosphoserine phosphatase; HAD family hydrolase, structural
genomics, PSI, protein STRU initiative, nysgrc; 2.30A
{Vibrio cholerae}
Length = 335
Score = 51.3 bits (123), Expect = 8e-07
Identities = 24/123 (19%), Positives = 46/123 (37%), Gaps = 19/123 (15%)
Query: 663 PPRPAVPDAIDACHKAGIRVIMVTGD-HPCT---AKAIAIKCHILSETSSDDNVFTGTDL 718
P P +P+ + H G +V + +G + + +++ + TG L
Sbjct: 178 PLMPELPELVATLHAFGWKVAIASGGFTYFSDYLKEQLSLDYAQSNTLEIVSGKLTGQVL 237
Query: 719 RKITDEELKDILETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGDGVNDAPALKKADI 778
++ + K + L Q+ + + VAV GDG ND + A +
Sbjct: 238 GEVVSAQTK--ADILLTLA-------QQYDV-----EIHNTVAV-GDGANDLVMMAAAGL 282
Query: 779 GIA 781
G+A
Sbjct: 283 GVA 285
>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB,
actuator, transport protein; 1.65A {Archaeoglobus
fulgidus} PDB: 2voy_F
Length = 113
Score = 47.5 bits (114), Expect = 8e-07
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 238 PTRATVIRNGSVKEIDSAGLVRGDIVLLKIGDKVPADIRLIEIQDLKAENSSLTGEVEPV 297
A VIR+G + + GDIV+++ G+K+P D ++E + E S ++GE PV
Sbjct: 11 AKTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESYVDE-SMISGEPVPV 69
Query: 298 TCTLGAT 304
+ G
Sbjct: 70 LKSKGDE 76
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics,
structural genomics center for infectious disease,
hydrolas; 2.05A {Mycobacterium avium}
Length = 415
Score = 51.0 bits (122), Expect = 1e-06
Identities = 27/123 (21%), Positives = 42/123 (34%), Gaps = 19/123 (15%)
Query: 663 PPRPAVPDAIDACHKAGIRVIMVTGD-HPCT---AKAIAIKCHILSETSSDDNVFTGTDL 718
P + + G +V+G A+ + + +E D TG +
Sbjct: 256 ELMPGARTTLRTLRRLGYACGVVSGGFRRIIEPLAEELMLDYVAANELEIVDGTLTGRVV 315
Query: 719 RKITDEELKDILETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGDGVNDAPALKKADI 778
I D K +E Q+ + + + VAV GDG ND L A +
Sbjct: 316 GPIIDRAGK--ATALREFA-------QRAGV-----PMAQTVAV-GDGANDIDMLAAAGL 360
Query: 779 GIA 781
GIA
Sbjct: 361 GIA 363
>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown
function; 1.00A {Bacteroides thetaiotaomicron} SCOP:
c.108.1.10 PDB: 1ymq_A 2rb5_A 2rav_A 2rar_A
Length = 261
Score = 49.1 bits (118), Expect = 3e-06
Identities = 35/164 (21%), Positives = 58/164 (35%), Gaps = 37/164 (22%)
Query: 664 PRPAVPDAIDACHKAGIRVIMVTGDHPCTA-------KAIAIKCHILSETSSDDNVFTGT 716
P+ V C K G+ I V + K H+ + +
Sbjct: 86 PQEEVKAMAAFCEKKGVPCIFVEEHNISVCQPNEMVKKIFYDFLHVNVIPTVSFEEASNK 145
Query: 717 DLRKI----TDEELKDILETNKELVFARTSP-------------------LQKLRIVELY 753
++ ++ T+EE K++L + R P ++ I
Sbjct: 146 EVIQMTPFITEEEEKEVLPSIPTCEIGRWYPAFADVTAKGDTKQKGIDEIIRHFGI---- 201
Query: 754 QSLDEIVAVTGDGVNDAPALKKADIGIAMGITGSEVSKQTADMI 797
L+E ++ GDG ND L+ A IG+AMG +V K AD +
Sbjct: 202 -KLEETMSF-GDGGNDISMLRHAAIGVAMGQAKEDV-KAAADYV 242
>1l7m_A Phosphoserine phosphatase; rossmann fold, four-helix bundle,
B-hairpin, structural genomics, BSGC structure funded by
NIH; 1.48A {Methanocaldococcus jannaschii} SCOP:
c.108.1.4 PDB: 1f5s_A 1l7n_A 1l7p_A* 1l7o_A* 1j97_A*
Length = 211
Score = 47.1 bits (113), Expect = 7e-06
Identities = 29/127 (22%), Positives = 47/127 (37%), Gaps = 27/127 (21%)
Query: 663 PPRPAVPDAIDACHKAGIRVIMVTG------DHPCTAKAIAIKCHILSETSSDDNVFTGT 716
P + I G V +V+G + + + + + D TG
Sbjct: 76 TPTEGAEETIKELKNRGYVVAVVSGGFDIAVNK--IKEKLGLDYAFANRLIVKDGKLTGD 133
Query: 717 DLRKITDEELK-DILETNKELVFARTSPLQKLRIVELYQ-SLDEIVAVTGDGVNDAPALK 774
++ E K +ILE +I ++ +L++ VAV GDG ND K
Sbjct: 134 VEGEVLKENAKGEILE----------------KIAKIEGINLEDTVAV-GDGANDISMFK 176
Query: 775 KADIGIA 781
KA + IA
Sbjct: 177 KAGLKIA 183
>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD
superfamily, structural genomi structural
genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus
horikoshii} SCOP: c.108.1.10
Length = 231
Score = 47.5 bits (114), Expect = 7e-06
Identities = 33/193 (17%), Positives = 61/193 (31%), Gaps = 68/193 (35%)
Query: 666 PAVPDAIDACHKAGIRVIMVTGDHPCTAKAIA----IKCHILSE-----TSSDDNVFTGT 716
+AI GI +++VTG+ A+A + +++E + +F +
Sbjct: 23 EKALEAIRRAESLGIPIMLVTGNTVQFAEAASILIGTSGPVVAEDGGAISYKKKRIFLAS 82
Query: 717 ---------DLRK------------------------ITDEELKDILETNKELVFARTSP 743
++RK I E +++I+ + A S
Sbjct: 83 MDEEWILWNEIRKRFPNARTSYTMPDRRAGLVIMRETINVETVREIINELNLNLVAVDSG 142
Query: 744 -------------------LQKLRIVELYQSLDEIVAVTGDGVNDAPALKKADIGIAMGI 784
+ L I E+ V GDG ND A K +A+
Sbjct: 143 FAIHVKKPWINKGSGIEKASEFLGI-----KPKEVAHV-GDGENDLDAFKVVGYKVAVA- 195
Query: 785 TGSEVSKQTADMI 797
++ K+ AD +
Sbjct: 196 QAPKILKENADYV 208
>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative
splicing, ATP-binding, cell membrane, cytoplasm, disease
mutation; NMR {Homo sapiens}
Length = 124
Score = 44.0 bits (105), Expect = 2e-05
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 238 PTRATVIRNGSV------KEIDSAGLVRGDIVLLKIGDKVPADIRLIEIQDLKAENSSLT 291
T AT++ S +++D + RGDI+ + G K P D R+IE + E S +T
Sbjct: 17 ATEATIVTLDSDNILLSEEQVDVELVQRGDIIKVVPGGKFPVDGRVIEGHSMVDE-SLIT 75
Query: 292 GEVEPVTCTLGAT 304
GE PV G+T
Sbjct: 76 GEAMPVAKKPGST 88
>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas
midwest center for structural genomics, MCSG, PSI; 1.40A
{Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A
Length = 227
Score = 45.6 bits (109), Expect = 2e-05
Identities = 30/188 (15%), Positives = 51/188 (27%), Gaps = 60/188 (31%)
Query: 666 PAVPDAIDACHKAGIRVIMVTGDHPCTAKAIA-----------------------IKCHI 702
++I + K G+ V +++G+ A+ IK
Sbjct: 25 TKAIESIRSAEKKGLTVSLLSGNVIPVVYALKIFLGINGPVFGENGGIMFDNDGSIKKFF 84
Query: 703 LSET---------------SSDDNVFTGTDLRKITDEELKDIL--ETNKELVFARTSP-- 743
+E S N + D E D + E S
Sbjct: 85 SNEGTNKFLEEMSKRTSMRSILTNRWREASTGFDIDPEDVDYVRKEAESRGFVIFYSGYS 144
Query: 744 -------------LQKLRIVELYQ-SLDEIVAVTGDGVNDAPALKKADIGIAMGITGSEV 789
+ KL E+Y DEI+ + GD ND P + ++
Sbjct: 145 WHLMNRGEDKAFAVNKL--KEMYSLEYDEILVI-GDSNNDMPMFQLPVRKACPA-NATDN 200
Query: 790 SKQTADMI 797
K +D +
Sbjct: 201 IKAVSDFV 208
>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid
dehalogenase-like hydrolas structural genomics, joint
center for structural genomics; HET: MSE; 2.10A
{Clostridium difficile}
Length = 274
Score = 43.3 bits (103), Expect = 2e-04
Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 26/93 (27%)
Query: 724 EELKDILETNKELVFARTSP-------------------LQKLRIVELYQSLDEIVAVTG 764
+E+KDIL+ EL S ++L + + E + G
Sbjct: 170 DEVKDILQDKMELAQRDISSQYYEIIQKDFHKGKAIKRLQERLGV-----TQKETICF-G 223
Query: 765 DGVNDAPALKKADIGIAMGITGSEVSKQTADMI 797
DG ND + +D+ IAM + ++ K A I
Sbjct: 224 DGQNDIVMFQASDVTIAMKNSHQQL-KDIATSI 255
>3fvv_A Uncharacterized protein; unknown function, structural genomics,
PSI,MCSG, protein STR initiative, midwest center for
structural genomics; 2.10A {Bordetella pertussis}
Length = 232
Score = 40.8 bits (96), Expect = 0.001
Identities = 23/121 (19%), Positives = 36/121 (29%), Gaps = 16/121 (13%)
Query: 665 RPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIK---CHIL-SETSSDDNVFTGTDLRK 720
D + AG +VT + IA H++ ++ D +TG
Sbjct: 94 TVQAVDVVRGHLAAGDLCALVTATNSFVTAPIARAFGVQHLIATDPEYRDGRYTGRIEGT 153
Query: 721 ITDEELKDILETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGDGVNDAPALKKADIGI 780
+ E K + + + L E D VND P L+ I
Sbjct: 154 PSFREGK--VVRVNQWLAGMGLAL---------GDFAESYFY-SDSVNDVPLLEAVTRPI 201
Query: 781 A 781
A
Sbjct: 202 A 202
>1nnl_A L-3-phosphoserine phosphatase; PSP, HPSP, phospho-aspartyl,
hydrolase; 1.53A {Homo sapiens} SCOP: c.108.1.4 PDB:
1l8l_A* 1l8o_A
Length = 225
Score = 40.7 bits (96), Expect = 0.001
Identities = 19/127 (14%), Positives = 43/127 (33%), Gaps = 27/127 (21%)
Query: 666 PAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHILS--------ETSSDDNVFTGTD 717
P + + + + ++V +++G + +A K +I + + + +
Sbjct: 89 PGIRELVSRLQERNVQVFLISGGFRSIVEHVASKLNIPATNVFANRLKFYFNGEYAGFDE 148
Query: 718 LRKITDEELK-DILETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGDGVNDAPALKKA 776
+ + K +++ KE +I+ + GDG D A A
Sbjct: 149 TQPTAESGGKGKVIKLLKEKF-----------------HFKKIIMI-GDGATDMEACPPA 190
Query: 777 DIGIAMG 783
D I G
Sbjct: 191 DAFIGFG 197
>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI,
protein structure initiative; 2.70A {Plasmodium vivax}
SCOP: c.108.1.10
Length = 301
Score = 41.1 bits (97), Expect = 0.001
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
Query: 744 LQKLRIVELYQSLDEIVAVTGDGVNDAPALKKADIGIAMGITGSEVSKQTADMILMDDNF 803
L+ I S D+++ V GD ND L A+ ++ +K A +L +
Sbjct: 233 LKHYNI-----SNDQVLVV-GDAENDIAMLSNFKYSFAVA-NATDSAKSHAKCVLPVSHR 285
Query: 804 ASIVLGIEEGRLIFDNLKK 822
V + + ++ +LKK
Sbjct: 286 EGAVAYLLK-KVF--DLKK 301
>1rku_A Homoserine kinase; phosphoserine phosphatase,
phosphoserine:homoserine phosphotransferase, THRH,
phosphoserine phosphoryl donor; 1.47A {Pseudomonas
aeruginosa} SCOP: c.108.1.11 PDB: 1rkv_A
Length = 206
Score = 40.3 bits (95), Expect = 0.001
Identities = 17/123 (13%), Positives = 40/123 (32%), Gaps = 26/123 (21%)
Query: 663 PPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHILSETSSDD---NVFTGTDLR 719
P + +D + +V++++ ++ + + + D
Sbjct: 69 KPLEGAVEFVDWL-RERFQVVILSDTFYEFSQPLMRQLGF------PTLLCHKLEIDDSD 121
Query: 720 KITDEELKDILETNKELVFARTSPLQKLRIVELYQS-LDEIVAVTGDGVNDAPALKKADI 778
++ +L+ K + V ++S ++A GD ND L +A
Sbjct: 122 RVVGYQLRQKD--------------PKRQSVIAFKSLYYRVIAA-GDSYNDTTMLSEAHA 166
Query: 779 GIA 781
GI
Sbjct: 167 GIL 169
>3gyg_A NTD biosynthesis operon putative hydrolase NTDB; PF05116, PF08282,
MCSG, PSI-2, haloacid dehalogenase-like HY structural
genomics; 2.45A {Bacillus subtilis subsp}
Length = 289
Score = 40.2 bits (94), Expect = 0.002
Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 7/69 (10%)
Query: 744 LQKLRIVELYQSLDEIVAVTGDGVNDAPALKKADIGIAMGITGSEVSKQTADMILMDDNF 803
L+K + + + +A GD ND L+ G + ++ +K ++I +
Sbjct: 220 LEKYNL-----NTERAIAF-GDSGNDVRMLQTVGNGYLLK-NATQEAKNLHNLITDSEYS 272
Query: 804 ASIVLGIEE 812
I +++
Sbjct: 273 KGITNTLKK 281
>1nf2_A Phosphatase; structural proteomics, HAD NEW fold, structural
genomics, BSGC structure funded by NIH structure
initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.108.1.10
Length = 268
Score = 39.4 bits (93), Expect = 0.004
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 744 LQKLRIVELYQSLDEIVAVTGDGVNDAPALKKADIGIAMGITGSEVSKQTADMI 797
+++ +EIV GD ND ++A + +AM E K+ +D++
Sbjct: 199 RERMNW-----KKEEIVVF-GDNENDLFMFEEAGLRVAME-NAIEKVKEASDIV 245
>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase;
structural genomics, PSI, protein structure initiative;
1.70A {Bacillus subtilis} SCOP: c.108.1.10
Length = 288
Score = 39.2 bits (92), Expect = 0.004
Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 20/90 (22%)
Query: 724 EELKDILETNKELVFARTSP---------------LQKLRIVELYQ-SLDEIVAVTGDGV 767
E E ++L ++ L++L + L+E AV GD +
Sbjct: 186 EAGWKRYEHAEDLTLVSSAEHNFELSSRKASKGQALKRL--AKQLNIPLEETAAV-GDSL 242
Query: 768 NDAPALKKADIGIAMGITGSEVSKQTADMI 797
ND L+ A G+AMG E K AD +
Sbjct: 243 NDKSMLEAAGKGVAMG-NAREDIKSIADAV 271
>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural
genomics, protein structure initiative; 2.90A
{Lactobacillus brevis}
Length = 279
Score = 39.1 bits (92), Expect = 0.005
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 744 LQKLRIVELYQSLDEIVAVTGDGVNDAPALKKADIGIAMGITGSEVSKQTADMI 797
+ +L + + D+++ + GD ND +K A +G+AMG + K+ A +
Sbjct: 206 VDQLGL-----TADDVMTL-GDQGNDLTMIKYAGLGVAMG-NAIDEVKEAAQAV 252
>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure
initiative, midwest center for STR genomics, MCSG,
unknown function; HET: MSE; 1.85A {Bacillus subtilis}
Length = 290
Score = 38.7 bits (91), Expect = 0.006
Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 26/116 (22%)
Query: 701 HILSETSSDDNVFTGTDLRKITDEELKDILETNKELVFARTSP----------------- 743
+L + V I + + I + + R +
Sbjct: 149 DLLMDEPVSAPVIEVYTEHDIQHDITETITKAFPAVDVIRVNDEKLNIVPKGVSKEAGLA 208
Query: 744 --LQKLRIVELYQSLDEIVAVTGDGVNDAPALKKADIGIAMGITGSEVSKQTADMI 797
+L + S+D++VA+ G +D P ++ A +G+AMG K+ AD +
Sbjct: 209 LVASELGL-----SMDDVVAI-GHQYDDLPMIELAGLGVAMG-NAVPEIKRKADWV 257
>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid
dehalogenase like hydrolase, mannosylglycerate,
cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus
horikoshii} PDB: 1wzc_A
Length = 249
Score = 38.3 bits (88), Expect = 0.007
Identities = 13/59 (22%), Positives = 18/59 (30%), Gaps = 2/59 (3%)
Query: 744 LQKLRIVELYQSLDEIVAVTGDGVNDAPALKKADIGIAMGITGSEVSKQTADMILMDDN 802
+ L E AV GD ND P + D +G + Q I+
Sbjct: 184 AKILLDFYKRLGQIESYAV-GDSYNDFPMFEVVDKVFIVGSLKHKK-AQNVSSIIDVLE 240
>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha
sandwich. stucture contains A magnesium ION., PSI,
protein structure initiative; 1.40A {Escherichia coli}
SCOP: c.108.1.10
Length = 282
Score = 38.7 bits (91), Expect = 0.007
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 744 LQKLRIVELYQSLDEIVAVTGDGVNDAPALKKADIGIAMGITGSEVSKQTADMI 797
L I +EI+A+ GD ND ++ A +G+A+ K+ A+ +
Sbjct: 207 ADVLGI-----KPEEIMAI-GDQENDIAMIEYAGVGVAVD-NAIPSVKEVANFV 253
>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase;
hypothetical protein, conserved protein, phophatase-like
domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12}
SCOP: c.108.1.10
Length = 275
Score = 38.5 bits (89), Expect = 0.007
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 748 RIVELYQSL----DEIVAVTGDGVNDAPALKKADIGIAMG 783
I+ YQ L + + GDG NDAP L+ D + +
Sbjct: 196 WIIATYQQLSGKRPTTLGL-GDGPNDAPLLEVMDYAVIVK 234
>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase,
enzyme function initiative, EFI, structural genomics;
1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A
Length = 279
Score = 38.3 bits (90), Expect = 0.007
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 7/54 (12%)
Query: 744 LQKLRIVELYQSLDEIVAVTGDGVNDAPALKKADIGIAMGITGSEVSKQTADMI 797
L+ + + + +E++A+ GDG ND +K A +G+AMG E K+ AD I
Sbjct: 206 LENIGM-----TREEVIAI-GDGYNDLSMIKFAGMGVAMG-NAQEPVKKAADYI 252
>3iru_A Phoshonoacetaldehyde hydrolase like protein; phosphonoacetaldehyde
hydrolase like P structural genomics, PSI-2, protein
structure initiative; 2.30A {Oleispira antarctica}
Length = 277
Score = 36.4 bits (84), Expect = 0.031
Identities = 24/193 (12%), Positives = 56/193 (29%), Gaps = 29/193 (15%)
Query: 653 RLIGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHILSETSSDDNV 712
+++ P + D GI+V TG P I T +
Sbjct: 101 IQTRIVAQRSQLIPGWKEVFDKLIAQGIKVGGNTGYGPGMMAPALIAAKEQGYT--PAST 158
Query: 713 FTGTDLRKITDEELKDILETNKELVFARTSPLQKLRIVEL--YQSLDEIVAVTGDGVNDA 770
TD+ + R P L++ ++ + V D +
Sbjct: 159 VFATDVVR------------------GRPFPDMALKVALELEVGHVNGCIKV-DDTLPGI 199
Query: 771 PALKKADIG-IAMGITGSEVSKQTADMILMDDNFASIVLGIEEGRLIFDNLKKSIAYILA 829
+A + + + +G+EV D + + + L + A+ +
Sbjct: 200 EEGLRAGMWTVGVSCSGNEVGLDREDWQALSSDEQQ-----SYRQHAEQRLFNAGAHYVI 254
Query: 830 SNIPEILPFLFYI 842
++ ++ + +
Sbjct: 255 DSVADLETVITDV 267
>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: EPE; 2.39A {Klebsiella pneumoniae
subsp}
Length = 285
Score = 36.4 bits (85), Expect = 0.035
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 7/52 (13%)
Query: 744 LQKLRIVELYQSLDEIVAVTGDGVNDAPALKKADIGIAMGITGSEVSKQTAD 795
+ L +L + +A GDG+NDA L A G M + K
Sbjct: 218 AKMLGY-----TLSDCIAF-GDGMNDAEMLSMAGKGCIMA-NAHQRLKDLHP 262
>3zx4_A MPGP, mannosyl-3-phosphoglycerate phosphatase; hydrolase,
haloalkanoid acid dehalogenase-like phosphatase,
crystallographic snapshot; HET: 2M8; 1.74A {Thermus
thermophilus} PDB: 3zty_A 3zu6_A* 3ztw_A* 3zw7_A*
3zwd_A* 3zwk_A 3zup_A* 3zx5_A*
Length = 259
Score = 36.1 bits (83), Expect = 0.037
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 748 RIVELYQ---SLDEIVAVTGDGVNDAPALKKADIGIAMG 783
R+ L+ V + GD +ND P + D+ + +G
Sbjct: 183 RLRALWPDPEEARFAVGL-GDSLNDLPLFRAVDLAVYVG 220
Score = 30.3 bits (68), Expect = 2.8
Identities = 7/36 (19%), Positives = 17/36 (47%)
Query: 670 DAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHILSE 705
+A++ G+ V+ VT +A+ ++ + E
Sbjct: 23 EALERLRALGVPVVPVTAKTRKEVEALGLEPPFIVE 58
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.054
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 6/30 (20%)
Query: 594 DKEAFLTAEKKYELEDKIKLFASKGERVLA 623
+K+A KK L+ +KL+A LA
Sbjct: 18 EKQAL----KK--LQASLKLYADDSAPALA 41
Score = 30.7 bits (68), Expect = 1.1
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 14/37 (37%)
Query: 744 LQKLRI-VELYQSLDEIVAVTGDGVNDAPALK-KADI 778
L+KL+ ++LY + APAL KA +
Sbjct: 22 LKKLQASLKLYAD------------DSAPALAIKATM 46
>3l7y_A Putative uncharacterized protein SMU.1108C; hydrolase; 2.00A
{Streptococcus mutans}
Length = 304
Score = 35.7 bits (83), Expect = 0.056
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 7/54 (12%)
Query: 744 LQKLRIVELYQSLDEIVAVTGDGVNDAPALKKADIGIAMGITGSEVSKQTADMI 797
L++ + D ++A GDG ND LK A AM + K A+
Sbjct: 237 LKRWNF-----TSDHLMAF-GDGGNDIEMLKLAKYSYAMA-NAPKNVKAAANYQ 283
>1s2o_A SPP, sucrose-phosphatase; phosphohydrolase, HAD superfamily,
cyanobacteria; 1.40A {Synechocystis SP} SCOP: c.108.1.10
PDB: 1tj3_A 1tj4_A* 1tj5_A* 1u2s_A* 1u2t_A* 2b1q_A*
2b1r_A* 2d2v_A*
Length = 244
Score = 35.3 bits (82), Expect = 0.058
Identities = 8/60 (13%), Positives = 17/60 (28%), Gaps = 7/60 (11%)
Query: 744 LQKLRIVELYQSLDEIVAVTGDGVNDAPALKKADIGIAMGITGSEVSKQTADMILMDDNF 803
Q L + + + GD ND + + G+ + D ++
Sbjct: 171 QQHLAM-----EPSQTLVC-GDSGNDIGLFETSARGVIVR-NAQPELLHWYDQWGDSRHY 223
>3dao_A Putative phosphatse; structural genomics, joint center for S
genomics, JCSG, protein structure initiative, PSI-2,
hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}
Length = 283
Score = 35.3 bits (82), Expect = 0.067
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 755 SLDEIVAVTGDGVNDAPALKKADIGIAMGITGSEVSKQTADMI 797
DE+ GD +ND L+ A I A+ + A
Sbjct: 226 LPDEVCCF-GDNLNDIEMLQNAGISYAVS-NARQEVIAAAKHT 266
>1rlm_A Phosphatase; HAD family, rossman fold, hydrolase; 1.90A
{Escherichia coli} SCOP: c.108.1.10 PDB: 1rlt_A 1rlo_A*
2hf2_A
Length = 271
Score = 35.2 bits (82), Expect = 0.071
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 744 LQKLRIVELYQSLDEIVAVTGDGVNDAPALKKADIGIAMGITGSEVSKQTADMI 797
L++ + S +VA+ GD NDA LK A AMG +E KQ A
Sbjct: 200 LKRWDL-----SPQNVVAI-GDSGNDAEMLKMARYSFAMG-NAAENIKQIARYA 246
>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase,
cell WALL, peptidoglycan-anchor, secreted; 2.10A
{Streptococcus agalactiae COH1} PDB: 3fax_A*
Length = 877
Score = 34.8 bits (80), Expect = 0.14
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 14/49 (28%)
Query: 643 DPMNF--PSSGFRLIGLISLYDPPRPAVP-----DAIDACHKAGIRVIM 684
DP ++ S + P P+ I HK G+ VI+
Sbjct: 347 DPQSYFALSGMY-------SEKPKDPSARIAELKQLIHDIHKRGMGVIL 388
>3kd3_A Phosphoserine phosphohydrolase-like protein; csgid, niaid, S
genomics, national institute of allergy and infectious
DISE (niaid); 1.70A {Francisella tularensis subsp}
Length = 219
Score = 33.8 bits (78), Expect = 0.16
Identities = 18/116 (15%), Positives = 39/116 (33%), Gaps = 13/116 (11%)
Query: 666 PAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHILSETSSDDNVFTGTDLRKITDEE 725
+ + + G + + +G + + A +I +N+F + +D
Sbjct: 85 DGIKELVQDLKNKGFEIWIFSGGLSESIQPFADYLNI-----PRENIFA-VETIWNSDGS 138
Query: 726 LKDILETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGDGVNDAPALKKADIGIA 781
K++ +N A S L + E++A+ GDG D +
Sbjct: 139 FKELDNSNG----ACDSKLSAFDKAKGL-IDGEVIAI-GDGYTDYQLY-EKGYATK 187
>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase;
1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*
Length = 714
Score = 34.7 bits (80), Expect = 0.18
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 14/49 (28%)
Query: 643 DPMNF--PSSGFRLIGLISLYDPPRPAVP-----DAIDACHKAGIRVIM 684
DP N+ + + DP P + I+ HK G+ I+
Sbjct: 232 DPQNYFSLTGMY-------SSDPKNPEKRIAEFKNLINEIHKRGMGAIL 273
>2oda_A Hypothetical protein pspto_2114; haloacid dehalogenase,
phosphonoacetaldehyde hydrolase, protein binding; HET:
EPE; 1.90A {Pseudomonas syringae PV}
Length = 196
Score = 33.4 bits (76), Expect = 0.20
Identities = 12/144 (8%), Positives = 31/144 (21%), Gaps = 30/144 (20%)
Query: 661 YDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHILSETSSDDNVFTGTDLRK 720
+ P +A+ A G+ + + +A +D +
Sbjct: 34 HAQLTPGAQNALKALRDQGMPCAWIDELPEALSTPLA--------APVNDWMIAAPRPTA 85
Query: 721 ITDEELKDILETNKELVFARTSPLQKLRIVELYQ--SLDEIVAVTGDGVNDAPALKKADI 778
P + L+ V + + A +
Sbjct: 86 ------------------GWPQPDACWMALMALNVSQLEGCVLI-SGDPRLLQSGLNAGL 126
Query: 779 -GIAMGITGSEVSKQTADMILMDD 801
I + G + +++
Sbjct: 127 WTIGLASCGPLCGLSPSQWQALNN 150
>2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase;
HET: BGC GLC; 2.25A {Streptococcus pneumoniae}
Length = 1014
Score = 34.1 bits (78), Expect = 0.25
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 14/49 (28%)
Query: 643 DPMNF--PSSGFRLIGLISLYDPPRPAVP-----DAIDACHKAGIRVIM 684
DP N+ + + DP P + I+ HK G+ I+
Sbjct: 539 DPQNYFSLTGMY-------SSDPKNPEKRIAEFKNLINEIHKRGMGAIL 580
>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel,
alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB:
2e8z_A* 2e9b_A*
Length = 718
Score = 34.3 bits (79), Expect = 0.25
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 14/49 (28%)
Query: 643 DPMNF--PSSGFRLIGLISLYDPPRPAVP-----DAIDACHKAGIRVIM 684
+P++F P + +P P I+ H+ G+RVI+
Sbjct: 293 NPLHFFAPEGSY-------ASNPHDPQTRKTELKQMINTLHQHGLRVIL 334
>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide,
amylase, starch, carbohydrate; 1.65A {Bacillus
acidopullulyticus}
Length = 921
Score = 33.6 bits (77), Expect = 0.42
Identities = 5/15 (33%), Positives = 7/15 (46%)
Query: 670 DAIDACHKAGIRVIM 684
I + H+ I V M
Sbjct: 536 QLIQSLHQQRIGVNM 550
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin,
teicoplanin, ORF1, natural products, antibiotic; HET:
UDP; 1.15A {Amycolatopsis orientalis} PDB: 3h4i_A*
1pn3_A* 1pnv_A*
Length = 404
Score = 32.9 bits (75), Expect = 0.46
Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 634 FPVNFKFSTDPMNFPSSGFR--LIGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHP 690
P S + F +G +G S P A AI+A G RV++ +G
Sbjct: 203 LPDQRPLSAELEGFLRAGSPPVYVGFGSGPAPAEAARV-AIEAVRAQGRRVVLSSGWAG 260
>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein
structure initiative, NORT structural genomics
consortium, NESG; 2.50A {Staphylococcus aureus subsp}
SCOP: c.108.1.13
Length = 384
Score = 32.5 bits (73), Expect = 0.71
Identities = 22/165 (13%), Positives = 51/165 (30%), Gaps = 18/165 (10%)
Query: 664 PRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIAIKCHILS-----ETSSDDNVFTGTDL 718
P V ++ AG + + TG +L ++ +V ++
Sbjct: 216 PVDEVKVLLNDLKGAGFELGIATGRPYTETVVPFENLGLLPYFEADFIATASDVLEAENM 275
Query: 719 RKITDEELK-DILETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGDGVNDAPALKKAD 777
K + L + + + V + GD + D + +K
Sbjct: 276 YPQARPLGKPNPFSYIAALYGNNRDKYESYINKQDNIVNKDDVFIVGDSLADLLSAQKIG 335
Query: 778 ---IGIAMGITGSEVSKQ----TADMILMDDNFA---SIVLGIEE 812
IG G+ G + + + AD ++ ++ ++ + E
Sbjct: 336 ATFIGTLTGLKGKDAAGELEAHHADYVI--NHLGELRGVLDNLLE 378
>1y8a_A Hypothetical protein AF1437; structural genomics, protein structu
initiative, PSI, midwest center for structural genomics;
1.40A {Archaeoglobus fulgidus} SCOP: c.108.1.24
Length = 332
Score = 32.0 bits (72), Expect = 0.78
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 10/88 (11%)
Query: 745 QKLRIVELYQS---LDEIVAVTGDGVNDAPALK--KADIGIAMGITGSEVSKQTADMILM 799
+K +I+ Y +D V V GD ++D + + G+A+ G+E + + AD++++
Sbjct: 207 EKAKIMRGYCESKGIDFPVVV-GDSISDYKMFEAARGLGGVAIAFNGNEYALKHADVVII 265
Query: 800 DDNFASIV----LGIEEGRLIFDNLKKS 823
S L +E F+ L
Sbjct: 266 SPTAMSEAKVIELFMERKERAFEVLSAV 293
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis
orientalis} SCOP: c.87.1.5
Length = 415
Score = 32.1 bits (73), Expect = 1.0
Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Query: 628 HLGQNNFPVNFKFSTDPMNFPSSGFR--LIGLISLYDPPRPAVPDAIDACHKAGIRVIMV 685
G P S + F +G +G SL P AV AIDA G RVI+
Sbjct: 214 QTGAWILPDERPLSPELAAFLDAGPPPVYLGFGSLGAPAD-AVRVAIDAIRAHGRRVILS 272
Query: 686 TGDHP 690
G
Sbjct: 273 RGWAD 277
>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE;
1.70A {Oryza sativa japonica group} PDB: 3amk_A
Length = 755
Score = 32.0 bits (73), Expect = 1.0
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 672 IDACHKAGIRVIM 684
+D H G+RV+M
Sbjct: 257 VDKAHSLGLRVLM 269
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function;
HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Length = 224
Score = 31.3 bits (71), Expect = 1.2
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 653 RLIGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIA 697
+++ +I+L + +P D K G+ V +T A AI
Sbjct: 18 KIVPVIALDNADD-ILP-LADTLAKNGLSVAEITFRSEAAADAIR 60
>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis
H37RV, mesophilic human pathogen, RV1326C gene, glycosyl
transferase; 2.33A {Mycobacterium tuberculosis}
Length = 722
Score = 31.8 bits (73), Expect = 1.2
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 672 IDACHKAGIRVIM 684
+DA H+AGI VI+
Sbjct: 319 VDALHQAGIGVIV 331
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken
ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A
{Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Length = 457
Score = 31.4 bits (72), Expect = 1.4
Identities = 5/22 (22%), Positives = 13/22 (59%)
Query: 664 PRPAVPDAIDACHKAGIRVIMV 685
P+ V D + C + G++ +++
Sbjct: 73 PKRFVKDTLIQCGEKGVKGVVI 94
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate,
beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Length = 225
Score = 31.0 bits (70), Expect = 1.5
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 653 RLIGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIA 697
R++ +I++ +P DA GIR + VT KAI
Sbjct: 27 RILPVITIAREED-ILP-LADALAAGGIRTLEVTLRSQHGLKAIQ 69
>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics,
center for structural genomics of infectious diseases,
unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella
enterica subsp}
Length = 618
Score = 31.5 bits (72), Expect = 1.7
Identities = 8/20 (40%), Positives = 11/20 (55%), Gaps = 4/20 (20%)
Query: 669 PDA----IDACHKAGIRVIM 684
PD IDA H G+ V++
Sbjct: 202 PDDFKAFIDAAHGYGLSVVL 221
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase;
1.64A {Vibrionales bacterium swat-3}
Length = 232
Score = 30.6 bits (69), Expect = 1.9
Identities = 7/45 (15%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 653 RLIGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIA 697
++I +I++ + +P + G+ +T +AI
Sbjct: 35 KVIPVIAIDNAED-IIP-LGKVLAENGLPAAEITFRSDAAVEAIR 77
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1
PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Length = 214
Score = 30.6 bits (69), Expect = 2.1
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 653 RLIGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIA 697
++ +I + AVP A G+RV+ VT C AI
Sbjct: 17 PVVPVIVVKKLEH-AVP-MAKALVAGGVRVLNVTLRTECAVDAIR 59
>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase,
alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A
{Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A*
2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A*
Length = 485
Score = 31.0 bits (70), Expect = 2.2
Identities = 4/15 (26%), Positives = 7/15 (46%)
Query: 670 DAIDACHKAGIRVIM 684
A+ + GI+V
Sbjct: 87 AAVTSLKNNGIQVYG 101
>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase,
protein-carbohydrate complex, desiccation resistance;
HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP:
b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A*
2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*
Length = 602
Score = 31.1 bits (71), Expect = 2.2
Identities = 6/20 (30%), Positives = 11/20 (55%), Gaps = 4/20 (20%)
Query: 669 PDA----IDACHKAGIRVIM 684
P+ +DA H+ G+ V +
Sbjct: 192 PEDLMALVDAAHRLGLGVFL 211
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal;
HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Length = 212
Score = 30.2 bits (68), Expect = 2.3
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 654 LIGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIA 697
LI ++ P A+ + A AG + + + P ++I
Sbjct: 9 LIAILRGITPDE-ALA-HVGAVIDAGFDAVEIPLNSPQWEQSIP 50
>3ewi_A N-acylneuraminate cytidylyltransferase; beta barrel, HAD-like,
rossmannoid fold, nucleotidyltransferase, nucleus; 1.90A
{Mus musculus}
Length = 168
Score = 29.7 bits (68), Expect = 2.4
Identities = 17/113 (15%), Positives = 33/113 (29%), Gaps = 35/113 (30%)
Query: 671 AIDACHKAGIRVIMVTG-DHPCTAK-AIAIKCHILSETSSDDNVFTGTDLRKITDEELKD 728
I K+GI V +++ A+ + C D
Sbjct: 44 GISLLKKSGIEVRLISERACSKQTLSALKLDCK----------TEVSV----------SD 83
Query: 729 ILETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGDGVNDAPALKKADIGIA 781
L T E +++ + E+ + G+ V+D LK+ +
Sbjct: 84 KLATVDEW-------RKEMGL-----CWKEVAYL-GNEVSDEECLKRVGLSAV 123
>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel,
alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus
solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A*
3vgh_A* 3vgg_A* 1eha_A
Length = 558
Score = 30.7 bits (70), Expect = 2.4
Identities = 7/20 (35%), Positives = 11/20 (55%), Gaps = 4/20 (20%)
Query: 669 PDA----IDACHKAGIRVIM 684
P+ +D HK G+ VI+
Sbjct: 167 PEGFRKLVDEAHKKGLGVIL 186
>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta
sandwich, transferase; 2.30A {Escherichia coli} SCOP:
b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A*
Length = 617
Score = 30.6 bits (70), Expect = 2.6
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 672 IDACHKAGIRVIM 684
IDA H AG+ VI+
Sbjct: 211 IDAAHAAGLNVIL 223
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown
function, aldolase superfamily, class I aldolase, KDPG
aldolase domain; 1.84A {Oleispira antarctica} PDB:
3vcr_A
Length = 217
Score = 30.2 bits (68), Expect = 2.8
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 653 RLIGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIA 697
LI +I + D A+P A G+ ++ VT AI+
Sbjct: 14 PLIPVIVIDDLVH-AIP-MAKALVAGGVHLLEVTLRTEAGLAAIS 56
>4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase
family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A*
2y5e_A* 2x4b_A
Length = 884
Score = 30.5 bits (69), Expect = 2.9
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 670 DAIDACHKAGIRVIM 684
+ A ++ G+RV+M
Sbjct: 383 QMVQALNRIGLRVVM 397
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1,
uncharacterized protein, structural genomics; 1.44A
{Corynebacterium glutamicum atcc 13032}
Length = 137
Score = 29.3 bits (66), Expect = 2.9
Identities = 5/32 (15%), Positives = 15/32 (46%)
Query: 655 IGLISLYDPPRPAVPDAIDACHKAGIRVIMVT 686
G++ D + + + A K G+ ++++
Sbjct: 10 AGVLDGTDEDQRRWRNLLAAAKKNGVGTVILS 41
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase;
1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Length = 205
Score = 30.1 bits (68), Expect = 2.9
Identities = 7/45 (15%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 653 RLIGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIA 697
+++ ++ A A + G+ +I +T P I
Sbjct: 11 KIVAVLRANSVEE-AKE-KALAVFEGGVHLIEITFTVPDADTVIK 53
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate
aldolase; structural genomics, NPPSFA; 1.67A {Thermus
thermophilus} PDB: 2yw4_A
Length = 207
Score = 29.8 bits (67), Expect = 3.1
Identities = 6/45 (13%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 653 RLIGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHPCTAKAIA 697
RL+ L+++ + + G+ + +T +A+
Sbjct: 14 RLLPLLTVRGGED-LLG-LARVLEEEGVGALEITLRTEKGLEALK 56
>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A
{Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A
1ud6_A 1ud8_A 1ud3_A
Length = 480
Score = 30.2 bits (68), Expect = 3.4
Identities = 4/15 (26%), Positives = 5/15 (33%)
Query: 670 DAIDACHKAGIRVIM 684
AI + I V
Sbjct: 85 RAIGSLKSNDINVYG 99
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K,
structural genomi protein structure initiative; 2.35A
{Lactobacillus reuteri}
Length = 221
Score = 29.6 bits (67), Expect = 3.8
Identities = 8/73 (10%), Positives = 28/73 (38%), Gaps = 7/73 (9%)
Query: 80 FVLDCSKKSILRF-IHKEKEMDVAQLRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSEL 138
+ ++ +++F + K E+D Q+ + + + L + +E
Sbjct: 26 YAFPVAESVLIQFRLMKGTELDEKQIAAIATADQQAK---AYSRMLDYLS---YQMRTES 79
Query: 139 EVKRRLEKDGPNS 151
++ ++L++
Sbjct: 80 DIVKKLKEIDTPE 92
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel,
hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1
c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A*
1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Length = 405
Score = 29.7 bits (67), Expect = 4.5
Identities = 5/15 (33%), Positives = 7/15 (46%)
Query: 670 DAIDACHKAGIRVIM 684
I A H G++ I
Sbjct: 73 SLIGALHGKGVQAIA 87
>2xz9_A Phosphoenolpyruvate-protein kinase (PTS system EI component in
bacteria); thermophilic, PEP-utilising enzyme,
transferase; 1.68A {Thermoanaerobacter tengcongensis}
PDB: 2bg5_A 2xz7_A*
Length = 324
Score = 29.8 bits (68), Expect = 4.7
Identities = 11/29 (37%), Positives = 12/29 (41%), Gaps = 4/29 (13%)
Query: 660 LYDPPRPAV----PDAIDACHKAGIRVIM 684
Y P PA+ IDA HK G M
Sbjct: 224 YYQPFHPAILRLVKMVIDAAHKEGKFAAM 252
>1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A
{Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1
c.1.8.1
Length = 750
Score = 30.0 bits (68), Expect = 4.8
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 670 DAIDACHKAGIRVIM 684
+ A H AGI+V M
Sbjct: 277 AMVQAFHNAGIKVYM 291
>3aie_A Glucosyltransferase-SI; beta-alpha-barrels; HET: MES; 2.10A
{Streptococcus mutans} PDB: 3aic_A* 3aib_A*
Length = 844
Score = 29.7 bits (66), Expect = 5.0
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 670 DAIDACHKAGIRVIM 684
AI A H GI+V+
Sbjct: 697 KAIKALHSKGIKVMA 711
>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability;
2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1
c.1.8.1
Length = 515
Score = 29.8 bits (67), Expect = 5.3
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 670 DAIDACHKAGIRVIM 684
AI A H AG++V
Sbjct: 86 QAIQAAHAAGMQVYA 100
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD; 2.08A {Micromonospora echinospora}
PDB: 3oth_A*
Length = 412
Score = 29.7 bits (67), Expect = 5.3
Identities = 6/37 (16%), Positives = 12/37 (32%)
Query: 654 LIGLISLYDPPRPAVPDAIDACHKAGIRVIMVTGDHP 690
+ L + + AID V++ +G
Sbjct: 246 YLTLGTSSGGTVEVLRAAIDGLAGLDADVLVASGPSL 282
>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I,
phosphoenolpyruvate:sugar phosphotransferase system,
PTS; HET: NEP; 2.70A {Escherichia coli} PDB: 2kx9_A
2xdf_A 2l5h_A
Length = 575
Score = 29.8 bits (68), Expect = 5.5
Identities = 11/30 (36%), Positives = 12/30 (40%), Gaps = 4/30 (13%)
Query: 659 SLYDPPRPAV----PDAIDACHKAGIRVIM 684
LY P P+V IDA H G M
Sbjct: 472 HLYQPMSPSVLNLIKQVIDASHAEGKWTGM 501
>2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl
hydrolase, glycogen debraching; HET: GLC A16; 2.8A
{Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A
Length = 718
Score = 29.6 bits (67), Expect = 5.6
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 670 DAIDACHKAGIRVIM 684
++ H AGI VI+
Sbjct: 271 KMVNELHNAGIEVII 285
>3zuk_A Endopeptidase, peptidase family M13; hydrolase-inhibitor complex,
pathogenicity, phagosome matura; HET: RDF 211 PGE PG4;
2.60A {Mycobacterium tuberculosis}
Length = 699
Score = 29.7 bits (67), Expect = 6.0
Identities = 21/109 (19%), Positives = 38/109 (34%), Gaps = 11/109 (10%)
Query: 657 LISLYDPPRPAVPDAIDACHKAGIRV-IMVTGDHPCT-----AKAIAIKCHILSETSSDD 710
LYD P + +GI + + P + H + + D
Sbjct: 22 GRDLYDDDDKDHPFTMTLAIPSGIDLSHIDADARPQDDLFGHVNGRWLAEHEIPADRATD 81
Query: 711 NVFTGTDLRKITDEELKDILETNKELVFARTSPLQKLRIVELYQS-LDE 758
F L + +++D++ + A + Q+ I +LY S LDE
Sbjct: 82 GAFR--SLFDRAETQVRDLIIQASQAGAAVGTDAQR--IGDLYASFLDE 126
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO
protein structure initiative, southeast collaboratory
for S genomics; 2.40A {Aquifex aeolicus}
Length = 162
Score = 28.6 bits (65), Expect = 6.2
Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 22/65 (33%)
Query: 739 ARTSP-----LQKLRIVELYQ-------SLDEI----------VAVTGDGVNDAPALKKA 776
R S L++L + E+Y ++I + GD V D +KK
Sbjct: 60 GRDSAPLITRLKELGVEEIYTGSYKKLEIYEKIKEKYSLKDEEIGFIGDDVVDIEVMKKV 119
Query: 777 DIGIA 781
+A
Sbjct: 120 GFPVA 124
>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid
9-phosphate phosphohydrolase, nucleotidyltransferase;
HET: PEG PG4 EDO PGE; 1.10A {Bacteroides
thetaiotaomicron} PDB: 3e84_A 3e81_A*
Length = 164
Score = 28.6 bits (65), Expect = 6.2
Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 32/112 (28%)
Query: 671 AIDACHKAGIRVIMVTG-DHPCTAKAIAIKCHILSETSSDDNVFTGTDLRKITDEELKDI 729
I H GI V ++TG + A K + D +F G K+ +++
Sbjct: 39 GIFWAHNKGIPVGILTGEKTEIVRR-RAEKLKV-------DYLFQGVV-DKL--SAAEEL 87
Query: 730 LETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGDGVNDAPALKKADIGIA 781
+L I +L+++ + GD +NDA LK+ I
Sbjct: 88 CN--------------ELGI-----NLEQVAYI-GDDLNDAKLLKRVGIAGV 119
>3ttq_A Dextransucrase; (beta/alpha)8 barrel, transferase; HET: PG4; 1.90A
{Leuconostoc mesenteroides} PDB: 3tto_A*
Length = 1108
Score = 29.7 bits (66), Expect = 6.4
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 670 DAIDACHKAGIRVIM 684
I A H A ++V+
Sbjct: 917 ATIQALHHANMQVMA 931
>2wqd_A Phosphoenolpyruvate-protein phosphotransferase; kinase, cytoplasm,
transport, magnesium, PEP- utilising enzyme,
phosphotransferase system; 2.40A {Staphylococcus aureus}
PDB: 2hro_A
Length = 572
Score = 29.4 bits (67), Expect = 6.5
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 659 SLYDPPRPAV----PDAIDACHKAGIRVIM 684
LY P P++ I+A HK G M
Sbjct: 474 YLYQPYNPSILRLVKQVIEASHKEGKWTGM 503
>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase,
hydrolase, metal-binding, secreted; 1.40A {Bacillus
amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A
1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A
Length = 483
Score = 29.4 bits (66), Expect = 6.6
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 670 DAIDACHKAGIRVIM 684
DAI + H ++V
Sbjct: 83 DAIGSLHSRNVQVYG 97
>3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable,
halophilic, N domain, starch binding, hydrolase; HET:
G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii} PDB:
3bcd_A* 3bcf_A
Length = 599
Score = 29.5 bits (66), Expect = 7.1
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 670 DAIDACHKAGIRVIM 684
+AIDA H I+V
Sbjct: 213 NAIDALHNNDIKVYF 227
>1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola
(beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A
{Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A*
1mxd_A* 3qgv_A*
Length = 435
Score = 29.4 bits (66), Expect = 7.2
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 670 DAIDACHKAGIRVIM 684
I H GI+VI
Sbjct: 91 RLIQTAHAYGIKVIA 105
>2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase,
glycosidase, ISO-amylase glycosyl hydrolase, glycogen
metabolism; 2.25A {Escherichia coli k-12}
Length = 657
Score = 29.5 bits (67), Expect = 7.4
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 670 DAIDACHKAGIRVIM 684
DAI A HKAGI VI+
Sbjct: 246 DAIKALHKAGIEVIL 260
>3bf5_A Ribokinase related protein; 10640157, putative ribokinase,
structural genomics, joint CE structural genomics, JCSG;
HET: MSE; 1.91A {Thermoplasma acidophilum dsm 1728}
Length = 306
Score = 28.7 bits (65), Expect = 7.9
Identities = 3/20 (15%), Positives = 7/20 (35%)
Query: 664 PRPAVPDAIDACHKAGIRVI 683
P+ +D ++I
Sbjct: 145 HFSTGPNYLDMAKSIRSKII 164
>1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif,
hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus
subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A
Length = 422
Score = 29.0 bits (65), Expect = 8.0
Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 6/25 (24%)
Query: 672 IDACHKAGIRVIM------VTGDHP 690
A + GI+VI+ T D+
Sbjct: 81 CAAAEEYGIKVIVDAVINHTTFDYA 105
>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable,
cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus
marinus}
Length = 696
Score = 29.0 bits (65), Expect = 8.5
Identities = 2/13 (15%), Positives = 7/13 (53%)
Query: 672 IDACHKAGIRVIM 684
+ H I++++
Sbjct: 318 VQVLHSRKIKIVL 330
>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022
hydrolase, lipopolysaccharide biosynthesis, magnesium,
STRU genomics; 1.95A {Yersinia pestis}
Length = 211
Score = 28.4 bits (64), Expect = 8.6
Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 22/65 (33%)
Query: 739 ARTSP-----LQKLRIVELYQ-------SLDEI----------VAVTGDGVNDAPALKKA 776
R + L I LYQ + E+ VA GD + D P + +
Sbjct: 100 GRRAKLLEDRANTLGITHLYQGQSDKLVAYHELLATLQCQPEQVAYIGDDLIDWPVMAQV 159
Query: 777 DIGIA 781
+ +A
Sbjct: 160 GLSVA 164
>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural
genomics, phosphatase, PSI-2, protein structure
initiative; HET: MSE; 1.76A {Vibrio cholerae}
Length = 195
Score = 28.3 bits (64), Expect = 8.7
Identities = 20/112 (17%), Positives = 38/112 (33%), Gaps = 32/112 (28%)
Query: 671 AIDACHKAGIRVIMVTG-DHPCTAKAIAIKCHILSETSSDDNVFTGTDLRKITDEELKDI 729
+ A AGI + ++TG I ++ G D K+ + DI
Sbjct: 60 GVKALMNAGIEIAIITGRRSQIVEN-RMKALGI-------SLIYQGQD-DKV--QAYYDI 108
Query: 730 LETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGDGVNDAPALKKADIGIA 781
+ KL I + ++ + GD + D P ++K + +
Sbjct: 109 CQ--------------KLAI-----APEQTGYI-GDDLIDWPVMEKVALRVC 140
>3esh_A Protein similar to metal-dependent hydrolase; structural genomics,
PSI-2, protein structure initiative; 2.50A
{Staphylococcus aureus subsp}
Length = 280
Score = 28.9 bits (65), Expect = 8.8
Identities = 6/35 (17%), Positives = 12/35 (34%), Gaps = 2/35 (5%)
Query: 613 LFASKGERVLAFADL--HLGQNNFPVNFKFSTDPM 645
S+G++ + D+ N + PM
Sbjct: 193 TIESQGDKAVHMGDIFPTTAHKNPLWVTAYDDYPM 227
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural
genomics, KDO 8-P phosphatase, structure function
project, S2F; HET: MES; 1.67A {Haemophilus influenzae
RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Length = 180
Score = 28.3 bits (64), Expect = 9.0
Identities = 18/112 (16%), Positives = 32/112 (28%), Gaps = 32/112 (28%)
Query: 671 AIDACHKAGIRVIMVTG-DHPCTAKAIAIKCHILSETSSDDNVFTGTDLRKITDEELKDI 729
I A I+V +++G D P + I F G K D+
Sbjct: 43 GIKMLMDADIQVAVLSGRDSPILRR-RIADLGI-------KLFFLGKL-EKE--TACFDL 91
Query: 730 LETNKELVFARTSPLQKLRIVELYQSLDEIVAVTGDGVNDAPALKKADIGIA 781
++ + + + ++ + GD D PA A
Sbjct: 92 MK--------------QAGV-----TAEQTAYI-GDDSVDLPAFAACGTSFA 123
>4g9b_A Beta-PGM, beta-phosphoglucomutase; HAD, putative
phosphoglucomutase, enzyme function initiative
structural genomics, isomerase; 1.70A {Escherichia coli}
Length = 243
Score = 28.4 bits (64), Expect = 9.4
Identities = 8/70 (11%), Positives = 21/70 (30%), Gaps = 19/70 (27%)
Query: 672 IDACHKAGIRVIMVTGDHPCTAKAIAIKCHILSETSSDDNVFTGTDLRKITDEELKDILE 731
IDA + +G+R + + + + +T L +
Sbjct: 179 IDAINASGMRSVGIGAGL-----------------TGAQLLL--PSTESLTWPRLSAFWQ 219
Query: 732 TNKELVFART 741
E ++ ++
Sbjct: 220 NVAENLYFQS 229
>2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI,
divalent metal, HAD superfamily, KDO 8-P, hydrolase;
1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A
3hyc_A 3i6b_A*
Length = 188
Score = 28.3 bits (64), Expect = 10.0
Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 22/65 (33%)
Query: 739 ARTSP-----LQKLRIVELYQ-------SLDEI----------VAVTGDGVNDAPALKKA 776
R + L I LYQ + ++ VA GD + D P ++K
Sbjct: 77 GRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKV 136
Query: 777 DIGIA 781
+ +A
Sbjct: 137 GLSVA 141
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.394
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,419,128
Number of extensions: 905337
Number of successful extensions: 2775
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2699
Number of HSP's successfully gapped: 155
Length of query: 961
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 858
Effective length of database: 3,825,930
Effective search space: 3282647940
Effective search space used: 3282647940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.6 bits)