BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6872
(112 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 92.4 bits (228), Expect = 5e-20, Method: Composition-based stats.
Identities = 44/104 (42%), Positives = 63/104 (60%)
Query: 3 LESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPY 62
+E TC T++FISIV+ Q A LI+CKTR NSI+QQ M N +L GL E +A LSY P
Sbjct: 919 VEFTCHTSFFISIVVVQWADLIICKTRRNSIFQQGMKNKILIFGLFEETALAAFLSYCPG 978
Query: 63 LNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPNSFM 106
+ L+ P+K +W P +++I +Y E + I R P ++
Sbjct: 979 TDVALRMYPLKPSWWFCAFPYSLIIFLYDEMRRFIIRRSPGGWV 1022
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 92.0 bits (227), Expect = 7e-20, Method: Composition-based stats.
Identities = 42/104 (40%), Positives = 63/104 (60%)
Query: 3 LESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPY 62
+E TC T +F++IV+ Q A L++CKTR NS++QQ M N +L GL E +A LSY P
Sbjct: 889 VEFTCHTPFFVTIVVVQWADLVICKTRRNSVFQQGMKNKILIFGLFEETALAAFLSYCPG 948
Query: 63 LNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPNSFM 106
+ L+ P+K +W P ++LI +Y E K+I R P ++
Sbjct: 949 MGVALRMYPLKPTWWFCAFPYSLLIFVYDEVRKLIIRRRPGGWV 992
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 92.0 bits (227), Expect = 8e-20, Method: Composition-based stats.
Identities = 42/104 (40%), Positives = 63/104 (60%)
Query: 3 LESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPY 62
+E TC T +F++IV+ Q A L++CKTR NS++QQ M N +L GL E +A LSY P
Sbjct: 883 VEFTCHTPFFVTIVVVQWADLVICKTRRNSVFQQGMKNKILIFGLFEETALAAFLSYCPG 942
Query: 63 LNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPNSFM 106
+ L+ P+K +W P ++LI +Y E K+I R P ++
Sbjct: 943 MGVALRMYPLKPTWWFCAFPYSLLIFVYDEVRKLIIRRRPGGWV 986
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 77.0 bits (188), Expect = 2e-15, Method: Composition-based stats.
Identities = 37/110 (33%), Positives = 61/110 (55%), Gaps = 1/110 (0%)
Query: 4 ESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKM-NNWVLNIGLVFEILVAFVLSYSPY 62
+ TC T +FISI + Q A +++ KTR S +QQ N +L I +VF++ + L Y P
Sbjct: 925 QYTCYTVFFISIEMCQIADVLIRKTRRLSAFQQGFFRNRILVIAIVFQVCIGCFLCYCPG 984
Query: 63 LNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPNSFMAHHLTF 112
+ + P++ ++WL P+P +LI +Y E K+ R P S+ L +
Sbjct: 985 MPNIFNFMPIRFQWWLVPMPFGLLIFVYDEIRKLGVRCCPGSWWDQELYY 1034
>pdb|3ENH|C Chain C, Crystal Structure Of Cgi121BUD32KAE1 COMPLEX
pdb|3ENH|D Chain D, Crystal Structure Of Cgi121BUD32KAE1 COMPLEX
pdb|2K8Y|A Chain A, Solution Nmr Structure Of Cgi121 From Methanococcus
Jannaschii. Northeast Structural Genomics Consortium
Target Mj0187
Length = 150
Score = 33.1 bits (74), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 32 SIYQQKMNNWVLNIGLVFEILVAFVLSYSPY----LNKVLKTRPVKMKYWLTPL 81
I ++NN + N+GL F+IL A V++ + +N+ +P+ +W+ L
Sbjct: 10 GIRGARINNEIFNLGLKFQILNADVVATKKHVLHAINQAKTKKPIAKSFWMEIL 63
>pdb|1IHM|A Chain A, Crystal Structure Analysis Of Norwalk Virus Capsid
pdb|1IHM|B Chain B, Crystal Structure Analysis Of Norwalk Virus Capsid
pdb|1IHM|C Chain C, Crystal Structure Analysis Of Norwalk Virus Capsid
Length = 530
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 53 VAFVLSYSPYLNKVLKTRPVKMKYWLTPLPIAVLIVIYG-EFGKIISRLYPNSFMAHHLT 111
V F LS P+LN L W+ + + +++ GKII P F +H+LT
Sbjct: 79 VLFDLSLGPHLNPFLLHLSQMYNGWVGNMRVRIMLAGNAFTAGKIIVSCIPPGFGSHNLT 138
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.330 0.140 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,117,836
Number of Sequences: 62578
Number of extensions: 102380
Number of successful extensions: 219
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 214
Number of HSP's gapped (non-prelim): 6
length of query: 112
length of database: 14,973,337
effective HSP length: 76
effective length of query: 36
effective length of database: 10,217,409
effective search space: 367826724
effective search space used: 367826724
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 45 (21.9 bits)