Query psy6872
Match_columns 112
No_of_seqs 114 out of 1039
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 20:33:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6872.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6872hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00689 Cation_ATPase_C: Cati 99.8 1.2E-19 2.7E-24 124.0 9.7 93 5-97 88-182 (182)
2 TIGR01106 ATPase-IIC_X-K sodiu 99.8 5.9E-19 1.3E-23 146.3 12.1 107 6-112 891-997 (997)
3 TIGR01522 ATPase-IIA2_Ca golgi 99.8 7.3E-18 1.6E-22 138.5 11.9 97 5-101 786-883 (884)
4 TIGR01116 ATPase-IIA1_Ca sarco 99.8 5.5E-18 1.2E-22 139.7 11.1 95 5-99 822-917 (917)
5 TIGR01523 ATPase-IID_K-Na pota 99.7 2.5E-17 5.4E-22 137.2 11.7 98 4-102 935-1049(1053)
6 KOG0203|consensus 99.7 1.1E-18 2.4E-23 139.9 1.4 110 3-112 910-1019(1019)
7 KOG0202|consensus 99.7 6.5E-17 1.4E-21 129.8 3.9 97 6-102 873-970 (972)
8 TIGR01517 ATPase-IIB_Ca plasma 99.5 5.9E-13 1.3E-17 110.4 10.4 90 5-97 847-938 (941)
9 PRK15122 magnesium-transportin 99.4 1.4E-12 3.1E-17 107.7 11.4 96 7-106 806-903 (903)
10 TIGR01524 ATPase-IIIB_Mg magne 99.2 1.9E-10 4E-15 95.0 11.3 93 7-105 771-867 (867)
11 PRK10517 magnesium-transportin 99.1 6.7E-10 1.5E-14 92.1 10.8 90 8-103 807-900 (902)
12 KOG0204|consensus 98.7 8.8E-10 1.9E-14 89.6 -1.6 88 7-97 916-1005(1034)
13 COG0474 MgtA Cation transport 98.7 2.3E-07 5E-12 77.4 11.2 93 4-96 816-912 (917)
14 TIGR01657 P-ATPase-V P-type AT 97.3 0.00042 9.1E-09 59.0 5.3 66 7-74 977-1045(1054)
15 TIGR01647 ATPase-IIIA_H plasma 96.6 0.0058 1.3E-07 50.5 6.2 52 4-57 701-752 (755)
16 TIGR00383 corA magnesium Mg(2+ 68.7 43 0.00094 24.5 7.6 27 77-106 292-318 (318)
17 PF10856 DUF2678: Protein of u 59.7 8 0.00017 25.0 1.9 70 30-101 16-86 (118)
18 TIGR03750 conj_TIGR03750 conju 57.8 47 0.001 21.2 6.4 15 94-108 70-84 (111)
19 COG0598 CorA Mg2+ and Co2+ tra 52.9 68 0.0015 23.9 6.3 16 39-54 258-273 (322)
20 PF10777 YlaC: Inner membrane 52.0 72 0.0016 21.6 5.9 40 19-58 10-53 (155)
21 PF04235 DUF418: Protein of un 51.7 67 0.0015 21.1 6.9 36 77-112 126-161 (163)
22 TIGR01478 STEVOR variant surfa 45.4 39 0.00084 25.3 3.8 18 88-105 273-290 (295)
23 PTZ00370 STEVOR; Provisional 43.8 41 0.00089 25.2 3.8 17 89-105 270-286 (296)
24 KOG0209|consensus 43.6 2.3E+02 0.005 25.0 9.0 68 31-98 1074-1148(1160)
25 COG1459 PulF Type II secretory 41.0 1E+02 0.0023 24.0 5.8 36 39-74 164-201 (397)
26 PF10361 DUF2434: Protein of u 38.2 1.7E+02 0.0037 22.0 6.8 88 9-96 50-146 (296)
27 PF12725 DUF3810: Protein of u 37.5 60 0.0013 24.4 3.9 28 63-90 14-41 (318)
28 TIGR02120 GspF general secreti 35.0 92 0.002 23.7 4.7 30 39-68 167-196 (399)
29 PRK09546 zntB zinc transporter 34.9 1.9E+02 0.0041 21.4 7.2 14 63-76 280-295 (324)
30 KOG2802|consensus 31.8 1.4E+02 0.0031 23.5 5.1 79 17-95 247-338 (503)
31 PF08552 Kei1: Inositolphospho 31.0 1.1E+02 0.0024 21.3 4.1 44 63-106 31-74 (189)
32 PF10746 Phage_holin_6: Phage 27.3 1.3E+02 0.0029 17.4 3.7 33 70-102 29-62 (66)
33 PF12555 TPPK_C: Thiamine pyro 24.9 60 0.0013 17.7 1.6 31 38-68 11-42 (53)
34 PF07256 DUF1435: Protein of u 24.3 1.5E+02 0.0033 17.7 3.3 33 68-100 23-55 (78)
35 PF09971 DUF2206: Predicted me 22.2 3.7E+02 0.0081 20.7 8.2 54 47-102 154-207 (367)
36 COG4280 Predicted membrane pro 20.1 3.4E+02 0.0075 19.5 6.7 37 62-100 53-89 (236)
No 1
>PF00689 Cation_ATPase_C: Cation transporting ATPase, C-terminus; InterPro: IPR006068 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved C-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3A3Y_A 2ZXE_A 2XZB_A 3B9B_A 3N5K_A 3FPS_A 3B9R_A 1WPG_C 2AGV_A 2O9J_A ....
Probab=99.82 E-value=1.2e-19 Score=124.00 Aligned_cols=93 Identities=29% Similarity=0.529 Sum_probs=85.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCCcccc-ccc-ccHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCcchhHHHHH
Q psy6872 5 STCQTAYFISIVIAQCAALIVCKTRYNSIYQ-QKM-NNWVLNIGLVFEILVAFVLSYSPYLNKVLKTRPVKMKYWLTPLP 82 (112)
Q Consensus 5 ~~a~t~~F~~lv~~ql~~~~~~Rs~~~~~~~-~~~-~N~~l~~~~~~~~~l~~~~~~vp~l~~~f~~~pl~~~~w~~~~~ 82 (112)
.++||++|.+++++|++|.+++|+++++.++ .+. +|++++.+++++++++++++|+|+++++|++.|+++.+|+.+++
T Consensus 88 ~~a~T~~F~~lv~~q~~~~~~~r~~~~~~~~~~~~~~N~~l~~~~~~~~~l~~~i~~~P~~~~~f~~~~l~~~~w~~~l~ 167 (182)
T PF00689_consen 88 AQAQTMAFTALVLSQLFNAFNCRSRRRSVFRFRGIFSNKWLLIAILISIALQILIVYVPGLNRIFGTAPLPLWQWLICLA 167 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSSSSTCTT-STGGGSHHHHHHHHHHHHHHHHHHHSTTHHHHST----THHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcccccccccceecccccccchHHHHHHHHHHHHHHHhcchhhHhhhcccCCCHHHHHHHHH
Confidence 4699999999999999999999999999998 777 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy6872 83 IAVLIVIYGEFGKII 97 (112)
Q Consensus 83 ~~~~~~~~~e~~K~~ 97 (112)
.++..+++.|++|++
T Consensus 168 ~~~~~~~~~ei~K~i 182 (182)
T PF00689_consen 168 LALLPFIVDEIRKLI 182 (182)
T ss_dssp HHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC
Confidence 999999999999975
No 2
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=99.80 E-value=5.9e-19 Score=146.32 Aligned_cols=107 Identities=41% Similarity=0.739 Sum_probs=100.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCcccccccccHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCcchhHHHHHHHH
Q psy6872 6 TCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPYLNKVLKTRPVKMKYWLTPLPIAV 85 (112)
Q Consensus 6 ~a~t~~F~~lv~~ql~~~~~~Rs~~~~~~~~~~~N~~l~~~~~~~~~l~~~~~~vp~l~~~f~~~pl~~~~w~~~~~~~~ 85 (112)
++||+.|++++++|++|.++||+++.++|+.+++|++++.+++++++++.+++|+|+++++|++.|+++.+|..+++.++
T Consensus 891 ~~~t~~f~~~v~~q~~~~~~~R~~~~~~f~~~~~n~~l~~~~~~~~~l~~~~~~~p~~~~~f~~~~l~~~~w~~~~~~~~ 970 (997)
T TIGR01106 891 TCHTAFFVSIVVVQWADLIICKTRRNSVFQQGMKNKILIFGLFEETALAAFLSYCPGMGVALRMYPLKPTWWFCAFPYSL 970 (997)
T ss_pred hhhHHHHHHHHHHHHHHHHHhccCcccccccCCcCHHHHHHHHHHHHHHHHHHHhhhhHHHhccccCCHHHHHHHHHHHH
Confidence 68999999999999999999999988888766799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCchhhhccC
Q psy6872 86 LIVIYGEFGKIISRLYPNSFMAHHLTF 112 (112)
Q Consensus 86 ~~~~~~e~~K~~~r~~~~~~~~~~~~~ 112 (112)
+.+++.|++|++.|+++++|+++-+-|
T Consensus 971 ~~~~~~~~~k~~~r~~~~~~~~~~~~~ 997 (997)
T TIGR01106 971 LIFVYDEIRKLIIRRNPGGWVEKETYY 997 (997)
T ss_pred HHHHHHHHHHHHHHhCCcchhhHhhcC
Confidence 999999999999999989999987644
No 3
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=99.76 E-value=7.3e-18 Score=138.52 Aligned_cols=97 Identities=22% Similarity=0.311 Sum_probs=91.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCCccccccc-ccHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCcchhHHHHHH
Q psy6872 5 STCQTAYFISIVIAQCAALIVCKTRYNSIYQQKM-NNWVLNIGLVFEILVAFVLSYSPYLNKVLKTRPVKMKYWLTPLPI 83 (112)
Q Consensus 5 ~~a~t~~F~~lv~~ql~~~~~~Rs~~~~~~~~~~-~N~~l~~~~~~~~~l~~~~~~vp~l~~~f~~~pl~~~~w~~~~~~ 83 (112)
.+++|++|.+++++|++|.++||+.+.++|+.+. +|++++++++++++++++++|+|+++++|++.|+++.+|.++++.
T Consensus 786 ~~~~t~~f~~~v~~q~~~~~~~r~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~p~~~~~f~~~~l~~~~w~~~~~~ 865 (884)
T TIGR01522 786 ARDTTMTFTCFVFFDMFNALACRSQTKSVFEIGFFSNRMFNYAVGGSIIGQLLVIYFPPLQSVFQTEALSIKDLLFLLLI 865 (884)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHccCCccccccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 4578999999999999999999999889898776 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhC
Q psy6872 84 AVLIVIYGEFGKIISRLY 101 (112)
Q Consensus 84 ~~~~~~~~e~~K~~~r~~ 101 (112)
+++.+++.|++|+++|++
T Consensus 866 ~~~~~~~~~~~k~~~~~~ 883 (884)
T TIGR01522 866 TSSVCIVDEIRKKVERSR 883 (884)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 999999999999988664
No 4
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=99.76 E-value=5.5e-18 Score=139.66 Aligned_cols=95 Identities=18% Similarity=0.352 Sum_probs=90.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCCccccccc-ccHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCcchhHHHHHH
Q psy6872 5 STCQTAYFISIVIAQCAALIVCKTRYNSIYQQKM-NNWVLNIGLVFEILVAFVLSYSPYLNKVLKTRPVKMKYWLTPLPI 83 (112)
Q Consensus 5 ~~a~t~~F~~lv~~ql~~~~~~Rs~~~~~~~~~~-~N~~l~~~~~~~~~l~~~~~~vp~l~~~f~~~pl~~~~w~~~~~~ 83 (112)
.++||++|.+++++|++|.++||+.++++|+.+. +|++++++++++++++++++|+|+++++|++.|+++.+|+++++.
T Consensus 822 ~~~~t~~f~~~v~~q~~~~~~~r~~~~~~~~~~~~~n~~~~~~~~~~~~l~~~~~~v~~~~~~f~~~~l~~~~w~~~~~~ 901 (917)
T TIGR01116 822 QPARTISLSVLVVIEMFNALNALSEDQSLLRMPPWVNKWLIGAICLSMALHFLILYVPFLSRIFGVTPLSLTDWLMVLKL 901 (917)
T ss_pred cchHHHHHHHHHHHHHHHHHHHcCCcccccccCCccCHHHHHHHHHHHHHHHHHHHhHHHHHHhccCCCCHHHHHHHHHH
Confidence 4689999999999999999999999899898776 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy6872 84 AVLIVIYGEFGKIISR 99 (112)
Q Consensus 84 ~~~~~~~~e~~K~~~r 99 (112)
+++.+++.|++|+++|
T Consensus 902 ~~~~~~~~e~~k~~~~ 917 (917)
T TIGR01116 902 SLPVILVDEVLKFFSR 917 (917)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999998754
No 5
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=99.74 E-value=2.5e-17 Score=137.22 Aligned_cols=98 Identities=20% Similarity=0.269 Sum_probs=89.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcCCCcccccc---------------c-ccHHHHHHHHHHHHHHHHHHhhhhhhh-c
Q psy6872 4 ESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQK---------------M-NNWVLNIGLVFEILVAFVLSYSPYLNK-V 66 (112)
Q Consensus 4 ~~~a~t~~F~~lv~~ql~~~~~~Rs~~~~~~~~~---------------~-~N~~l~~~~~~~~~l~~~~~~vp~l~~-~ 66 (112)
..+|||++|.+++++|++|+++||+.+.++|+.+ . +|++++++++++++++++++|+|+++. +
T Consensus 935 ~~~a~t~~f~~l~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~l~~~~~~~~~l~~~~~~~p~~~~~~ 1014 (1053)
T TIGR01523 935 VFKARSAAFATMTFCALILAVEVKDFDNSFFNLHGIPDGDSNFKEFFHSIVENKFLAWAIAFAAVSAFPTIYIPVINDDV 1014 (1053)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcCchhhhhcCccccccccccccccCCccCHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 3478999999999999999999999998888652 5 999999999999999999999999996 9
Q ss_pred ccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy6872 67 LKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYP 102 (112)
Q Consensus 67 f~~~pl~~~~w~~~~~~~~~~~~~~e~~K~~~r~~~ 102 (112)
|++.|+++ +|.++++.++.++++.|++|+++|+.+
T Consensus 1015 f~~~~l~~-~w~~~~~~~~~~~~~~e~~K~~~r~~~ 1049 (1053)
T TIGR01523 1015 FKHKPIGA-EWGLAAAATIAFFFGAEIWKCGKRRLF 1049 (1053)
T ss_pred hccCCcch-HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999995 999999999999999999999987665
No 6
>KOG0203|consensus
Probab=99.72 E-value=1.1e-18 Score=139.88 Aligned_cols=110 Identities=44% Similarity=0.771 Sum_probs=106.3
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHhcCCCcccccccccHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCcchhHHHHH
Q psy6872 3 LESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPYLNKVLKTRPVKMKYWLTPLP 82 (112)
Q Consensus 3 ~~~~a~t~~F~~lv~~ql~~~~~~Rs~~~~~~~~~~~N~~l~~~~~~~~~l~~~~~~vp~l~~~f~~~pl~~~~w~~~~~ 82 (112)
.|.+++|++|.+++..|+.+.+.|++++.|+|.+|++|+.+..+++...++....+|+|++...+++.|+.+..|...++
T Consensus 910 le~tc~taFfvsIvV~Q~adLii~KTRRnSlfqqGmrN~vl~f~v~~e~~La~fl~y~pg~~~~l~~~pl~~~~wl~a~P 989 (1019)
T KOG0203|consen 910 LEYTCYTAFFISIVVVQWADLIICKTRRNSIFQQGMRNKVLIFAVIFETCLACFLCYCPGVLYALGMYPLKFQWWLVAFP 989 (1019)
T ss_pred HHHhhhhheeeeehHHhHhhHHhhhcchhHHHHhhhhhhhHHHHHHHHHHHHHHHhcCccHHHHhccCCCCcEEEEeccc
Confidence 46779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCchhhhccC
Q psy6872 83 IAVLIVIYGEFGKIISRLYPNSFMAHHLTF 112 (112)
Q Consensus 83 ~~~~~~~~~e~~K~~~r~~~~~~~~~~~~~ 112 (112)
.++.+++.+|+||+++|++|++|+++-+.|
T Consensus 990 ~~ilIfvydE~Rk~~IR~~P~gw~e~etyY 1019 (1019)
T KOG0203|consen 990 FGILIFVYDEVRKLFIRRYPGGWLEKETYY 1019 (1019)
T ss_pred ceeeeeeHHHHHhHhhhhCCCchhhhhccC
Confidence 999999999999999999999999999877
No 7
>KOG0202|consensus
Probab=99.65 E-value=6.5e-17 Score=129.83 Aligned_cols=97 Identities=23% Similarity=0.400 Sum_probs=93.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCccccccc-ccHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCcchhHHHHHHH
Q psy6872 6 TCQTAYFISIVIAQCAALIVCKTRYNSIYQQKM-NNWVLNIGLVFEILVAFVLSYSPYLNKVLKTRPVKMKYWLTPLPIA 84 (112)
Q Consensus 6 ~a~t~~F~~lv~~ql~~~~~~Rs~~~~~~~~~~-~N~~l~~~~~~~~~l~~~~~~vp~l~~~f~~~pl~~~~w~~~~~~~ 84 (112)
.+.||+|..+++-..+|+++|||.++++|..++ .|+|+.+++.++++++.+++|+|+++++|+++|+++.+|+.++.+.
T Consensus 873 ~~~tMa~tv~V~~emfNaL~~~se~~slf~~~~~~N~~l~~ai~~S~~~~f~ilYvp~l~~iFq~~~l~~~ew~~vl~~s 952 (972)
T KOG0202|consen 873 CPLTMALTVLVFIEMFNALNCLSENKSLFTMPPWSNRWLLWAIALSFVLHFLVLYVPPLQRIFQTEPLSLAEWLLVLAIS 952 (972)
T ss_pred ccceEEEeehhHHHHHHHhhcccCCcceEEecccccHHHHHHHHHHHHhhheEEEechhhhhheecCCcHHHHHHHHHHh
Confidence 466999999999999999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCC
Q psy6872 85 VLIVIYGEFGKIISRLYP 102 (112)
Q Consensus 85 ~~~~~~~e~~K~~~r~~~ 102 (112)
...++.+|+.|++.|+..
T Consensus 953 ~~V~i~dEilK~~~R~~~ 970 (972)
T KOG0202|consen 953 SPVIIVDEILKFIARNYF 970 (972)
T ss_pred hhhhhHHHHHHHHHHhcc
Confidence 999999999999998764
No 8
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=99.45 E-value=5.9e-13 Score=110.38 Aligned_cols=90 Identities=16% Similarity=0.311 Sum_probs=80.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCC-ccccccc-ccHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCcchhHHHHH
Q psy6872 5 STCQTAYFISIVIAQCAALIVCKTRYN-SIYQQKM-NNWVLNIGLVFEILVAFVLSYSPYLNKVLKTRPVKMKYWLTPLP 82 (112)
Q Consensus 5 ~~a~t~~F~~lv~~ql~~~~~~Rs~~~-~~~~~~~-~N~~l~~~~~~~~~l~~~~~~vp~l~~~f~~~pl~~~~w~~~~~ 82 (112)
.+++|++|.+++++|++|.+++|+.+. ++|+ ++ +|++++.+++++++++ ++++|+++.+|++.|+++.+|..+++
T Consensus 847 ~~~~t~~f~~~v~~~~~~~~~~r~~~~~~~~~-~~~~n~~~~~~~~~~~~l~--~~~~~~~~~~f~~~~l~~~~w~~~~~ 923 (941)
T TIGR01517 847 GELNTIVFNTFVLLQLFNEINARKLYERNVFE-GLFKNRIFVTIMGFTFGFQ--VIIVEFGGSFFSTVSLSIEQWIGCVL 923 (941)
T ss_pred chhhHHHHHHHHHHHHHHHHHHccCCcccccc-cccccHHHHHHHHHHHHHH--HHHHHHHHHHhcccCCCHHHHHHHHH
Confidence 568999999999999999999999875 5565 66 9999999998888888 44667889999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy6872 83 IAVLIVIYGEFGKII 97 (112)
Q Consensus 83 ~~~~~~~~~e~~K~~ 97 (112)
.+++.+++.|+.|.+
T Consensus 924 ~~~~~~~~~~~~~~~ 938 (941)
T TIGR01517 924 LGMLSLIFGVLLRLI 938 (941)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999876
No 9
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=99.43 E-value=1.4e-12 Score=107.74 Aligned_cols=96 Identities=14% Similarity=0.113 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCcccccccccHHHHHHHHHHHHHHHHHHhhhh--hhhcccccCCCcchhHHHHHHH
Q psy6872 7 CQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPY--LNKVLKTRPVKMKYWLTPLPIA 84 (112)
Q Consensus 7 a~t~~F~~lv~~ql~~~~~~Rs~~~~~~~~~~~N~~l~~~~~~~~~l~~~~~~vp~--l~~~f~~~pl~~~~w~~~~~~~ 84 (112)
.+|+.|.+++++|++|.+++|+++.++| +|++.+.++.++++++++++|+|+ ++.+|+++|+++.+|.++++.+
T Consensus 806 ~~t~~f~~l~~~q~~~~~~~R~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~f~~~~l~~~~~~~~~~~~ 881 (903)
T PRK15122 806 FQSGWFIEGLLSQTLVVHMLRTQKIPFI----QSTAALPVLLTTGLIMAIGIYIPFSPLGAMVGLEPLPWSYFPWLAATL 881 (903)
T ss_pred hHHHHHHHHHHHHHHHHHhhCcCCCCcC----cchHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 3578899999999999999999865433 577888888899999999999997 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCch
Q psy6872 85 VLIVIYGEFGKIISRLYPNSFM 106 (112)
Q Consensus 85 ~~~~~~~e~~K~~~r~~~~~~~ 106 (112)
+..+++.|+.|.+..++.+.|+
T Consensus 882 ~~~~~~~e~~k~~~~r~~~~~~ 903 (903)
T PRK15122 882 LGYCLVAQGMKRFYIRRFGQWF 903 (903)
T ss_pred HHHHHHHHHHHHHHhhhccccC
Confidence 9999999999977666667774
No 10
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=99.20 E-value=1.9e-10 Score=95.00 Aligned_cols=93 Identities=12% Similarity=0.160 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCcccccccccHHHHHHHHHHHHHHHHHHhhhh--hhhcccccCCCc--chhHHHHH
Q psy6872 7 CQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPY--LNKVLKTRPVKM--KYWLTPLP 82 (112)
Q Consensus 7 a~t~~F~~lv~~ql~~~~~~Rs~~~~~~~~~~~N~~l~~~~~~~~~l~~~~~~vp~--l~~~f~~~pl~~--~~w~~~~~ 82 (112)
-||+.|.+++++|++|++++|+++.++| +|++++.+++++++++++++|+|+ ++.+|++.|+++ .+|..++.
T Consensus 771 ~~t~~f~~~~~~~~~~~~~~R~~~~~~~----~n~~~~~~~~~~~~~~~~~~~~p~~~~~~~f~~~~l~~~~~~~~~~~~ 846 (867)
T TIGR01524 771 FQSGWFVVGLLSQTLVVHMIRTEKIPFI----QSRAAAPVMIATLLVMALGIIIPFSPLGHSIGLVSLPLSYFPWLIAIL 846 (867)
T ss_pred HHHHHHHHHHHHHHHHHHhhCcCCCCcC----cchHHHHHHHHHHHHHHHHHHhchhhhhhhhccccCCccHHHHHHHHH
Confidence 3788999999999999999999865433 689999999999999999999997 499999998854 57777776
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCc
Q psy6872 83 IAVLIVIYGEFGKIISRLYPNSF 105 (112)
Q Consensus 83 ~~~~~~~~~e~~K~~~r~~~~~~ 105 (112)
.+.. ++.|+.|.+..++.+.|
T Consensus 847 ~~~~--~~~e~~k~~~~~~~~~~ 867 (867)
T TIGR01524 847 VGYM--ATMQLVKTFYIRRFGEW 867 (867)
T ss_pred HHHH--HHHHHHHHHHHHhccCC
Confidence 6655 67899997766655555
No 11
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=99.12 E-value=6.7e-10 Score=92.07 Aligned_cols=90 Identities=14% Similarity=0.142 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcccccccccHHHHHHHHHHHHHHHHHHhhh--hhhhcccccCCC--cchhHHHHHH
Q psy6872 8 QTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSP--YLNKVLKTRPVK--MKYWLTPLPI 83 (112)
Q Consensus 8 ~t~~F~~lv~~ql~~~~~~Rs~~~~~~~~~~~N~~l~~~~~~~~~l~~~~~~vp--~l~~~f~~~pl~--~~~w~~~~~~ 83 (112)
+|..|.+++++|+++.++||+++.++| +|++++.+++.+++++++++|+| +++.+|+++|++ ..+|..++..
T Consensus 807 ~~~~F~~~~~~q~~~~~~~R~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~ 882 (902)
T PRK10517 807 QSGWFVVGLLSQTLIVHMIRTRRIPFI----QSRAAWPLMIMTLIVMAVGIALPFSPLASYLQLQALPLSYFPWLVAILA 882 (902)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCcc----cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhCCcCCChhHHHHHHHHHH
Confidence 445599999999999999999765322 78999999999999999999999 999999999999 5678777766
Q ss_pred HHHHHHHHHHHHHHHHhCCC
Q psy6872 84 AVLIVIYGEFGKIISRLYPN 103 (112)
Q Consensus 84 ~~~~~~~~e~~K~~~r~~~~ 103 (112)
+.. ++.|+.|...-++-+
T Consensus 883 ~~~--~~~e~~K~~~~~~~~ 900 (902)
T PRK10517 883 GYM--TLTQLVKGFYSRRYG 900 (902)
T ss_pred HHH--HHHHHHHHHHHHhhc
Confidence 655 667888866444333
No 12
>KOG0204|consensus
Probab=98.74 E-value=8.8e-10 Score=89.59 Aligned_cols=88 Identities=18% Similarity=0.336 Sum_probs=78.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCC-Cccccccc-ccHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCcchhHHHHHHH
Q psy6872 7 CQTAYFISIVIAQCAALIVCKTRY-NSIYQQKM-NNWVLNIGLVFEILVAFVLSYSPYLNKVLKTRPVKMKYWLTPLPIA 84 (112)
Q Consensus 7 a~t~~F~~lv~~ql~~~~~~Rs~~-~~~~~~~~-~N~~l~~~~~~~~~l~~~~~~vp~l~~~f~~~pl~~~~w~~~~~~~ 84 (112)
-.|+.|.++|++|+||-+|.|+.+ .++|+ +. +|+.+...+.+.+++|+.++ ..++..|.+.|+++.||++|+..+
T Consensus 916 ~nTiIFNtFV~~qvFNEinaRki~~~NvFk-gi~~N~~F~~ii~~T~v~QviIv--eF~g~~~st~~L~~~qWl~ci~~g 992 (1034)
T KOG0204|consen 916 HNTIIFNTFVFCQVFNEINARKIDERNVFK-GIFRNRLFCVIITITVVSQVIIV--EFGGAFFSTTPLSLTQWLWCIFIG 992 (1034)
T ss_pred heeeehhHHHHHHHHHHHhhcchhHHhHHH-HHhcCceEEEEeeeeeehhhhhh--hhcCcceeeecccHHHHHHHHHHH
Confidence 348999999999999999999975 57787 65 99999888888899998876 447889999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy6872 85 VLIVIYGEFGKII 97 (112)
Q Consensus 85 ~~~~~~~e~~K~~ 97 (112)
++.++|..+.|.+
T Consensus 993 ~~sl~~g~~ik~i 1005 (1034)
T KOG0204|consen 993 VLSLPWGQLLKCI 1005 (1034)
T ss_pred HHHHHHHHHheec
Confidence 9999999998866
No 13
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=98.69 E-value=2.3e-07 Score=77.36 Aligned_cols=93 Identities=23% Similarity=0.449 Sum_probs=80.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcCCCccccccc-ccHHHHHHHHHHHHHHHHHHhhhhhh-hcccccCCCcchhHHHH
Q psy6872 4 ESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKM-NNWVLNIGLVFEILVAFVLSYSPYLN-KVLKTRPVKMKYWLTPL 81 (112)
Q Consensus 4 ~~~a~t~~F~~lv~~ql~~~~~~Rs~~~~~~~~~~-~N~~l~~~~~~~~~l~~~~~~vp~l~-~~f~~~pl~~~~w~~~~ 81 (112)
...++|+.|..++++|.++.+.+|+.+.+.++.++ +|+.++++++...+++++..|+|+.+ ..|+..|++..+|..+.
T Consensus 816 ~~~~~t~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~l~l~~~~~~~~~~~~f~~~~~~~~~~~~~~ 895 (917)
T COG0474 816 QALLQTTAFTVLVLIQLLLTLAVRSRGRPFLSSLLFSNKYLWLALLVIIILQLLIIFLPPLNLKIFQPTPLSLFEWLIAI 895 (917)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhhcccccCHHHHHHHHHHHHHHHHHHHhHHhHhhhccCCCCcHHHHHHHH
Confidence 56689999999999999999999999899888777 99999999999999999999999999 79999999988999888
Q ss_pred HHHHHH--HHHHHHHHH
Q psy6872 82 PIAVLI--VIYGEFGKI 96 (112)
Q Consensus 82 ~~~~~~--~~~~e~~K~ 96 (112)
..+... +...+..|.
T Consensus 896 ~~~~~~~~~~~~~~~~~ 912 (917)
T COG0474 896 AVALLLLYIVVSELYKL 912 (917)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 888444 444444443
No 14
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=97.30 E-value=0.00042 Score=58.96 Aligned_cols=66 Identities=17% Similarity=0.240 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCccccccc-ccHHHHHHHHHHHHHHH-HHH-hhhhhhhcccccCCCc
Q psy6872 7 CQTAYFISIVIAQCAALIVCKTRYNSIYQQKM-NNWVLNIGLVFEILVAF-VLS-YSPYLNKVLKTRPVKM 74 (112)
Q Consensus 7 a~t~~F~~lv~~ql~~~~~~Rs~~~~~~~~~~-~N~~l~~~~~~~~~l~~-~~~-~vp~l~~~f~~~pl~~ 74 (112)
.+|+.| .++..|.++.+.+++. +++|+.++ +|++++++++++.++++ +++ |+|+++++|++.|++.
T Consensus 977 ~~T~~f-~~~~~~~~~~~~~~~~-g~pf~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 1045 (1054)
T TIGR01657 977 LNTVLF-FVSSFQYLITAIVNSK-GPPFREPIYKNKPFVYLLITGLGLLLVLLLDPHPLLGKILQIVPLPQ 1045 (1054)
T ss_pred HHHHHH-HHHHHHHHHheEEEcC-CcchhhhHHHhHHHHHHHHHHHHHHHHhhhCCCHHHHhhheeeeCCH
Confidence 469999 5555566667788885 67788888 99999999888777665 344 8999999999999985
No 15
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=96.63 E-value=0.0058 Score=50.49 Aligned_cols=52 Identities=17% Similarity=0.208 Sum_probs=40.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcCCCcccccccccHHHHHHHHHHHHHHHHH
Q psy6872 4 ESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVL 57 (112)
Q Consensus 4 ~~~a~t~~F~~lv~~ql~~~~~~Rs~~~~~~~~~~~N~~l~~~~~~~~~l~~~~ 57 (112)
.+++||++|..++++|.++.+++|+++.+.. ..+|+++..+.++..++..++
T Consensus 701 ~~~~~t~~f~~~~~~~~~~~~~~r~~~~~~~--~~p~~~l~~~~~~~~~~~~~~ 752 (755)
T TIGR01647 701 HGNLQSLIYLQVSISGQATIFVTRTHGFFWS--ERPGKLLFIAFVIAQIIATFI 752 (755)
T ss_pred HhhhHHHHHHHHHHHHHHHHheeccCCCCcc--cCCcHHHHHHHHHHHHHHHHH
Confidence 3478999999999999999999999876643 237888888877776665443
No 16
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=68.67 E-value=43 Score=24.54 Aligned_cols=27 Identities=19% Similarity=0.149 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCCch
Q psy6872 77 WLTPLPIAVLIVIYGEFGKIISRLYPNSFM 106 (112)
Q Consensus 77 w~~~~~~~~~~~~~~e~~K~~~r~~~~~~~ 106 (112)
|+.....++..+...-..-+++| |+|+
T Consensus 292 ~gy~~~l~~m~~i~~~~~~~fkr---k~Wl 318 (318)
T TIGR00383 292 YGYPAVLIVMAVIALGPLIYFRR---KGWL 318 (318)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH---cCCC
Confidence 44444433333333323333433 4564
No 17
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=59.68 E-value=8 Score=24.95 Aligned_cols=70 Identities=7% Similarity=-0.034 Sum_probs=39.2
Q ss_pred CCccccccc-ccHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhC
Q psy6872 30 YNSIYQQKM-NNWVLNIGLVFEILVAFVLSYSPYLNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLY 101 (112)
Q Consensus 30 ~~~~~~~~~-~N~~l~~~~~~~~~l~~~~~~vp~l~~~f~~~pl~~~~w~~~~~~~~~~~~~~e~~K~~~r~~ 101 (112)
++++|.... +-+...+.+++...+.+++..+ .+-+|+..|+.+.+...+....+..+...-+.+|.|+..
T Consensus 16 ~rPLFGE~~~r~riinliiG~vT~l~VLvtii--~afvf~~~~p~p~~iffavcI~l~~~s~~lLI~WYR~gd 86 (118)
T PF10856_consen 16 NRPLFGETSARDRIINLIIGAVTSLFVLVTII--SAFVFPQDPPKPLHIFFAVCILLICISAILLIFWYRQGD 86 (118)
T ss_pred CCcccCCCCcccEEEEeehHHHHHHHHHHHHh--heEEecCCCCCceEEehHHHHHHHHHHHHhheeehhcCC
Confidence 355665433 4444444555444444443322 345777777777676666666666666566677776643
No 18
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=57.76 E-value=47 Score=21.21 Aligned_cols=15 Identities=13% Similarity=0.204 Sum_probs=9.4
Q ss_pred HHHHHHhCCCCchhh
Q psy6872 94 GKIISRLYPNSFMAH 108 (112)
Q Consensus 94 ~K~~~r~~~~~~~~~ 108 (112)
..+++|-+|++|+-|
T Consensus 70 l~rlKRGrPe~yl~r 84 (111)
T TIGR03750 70 LARLKRGKPEGYLYR 84 (111)
T ss_pred HHHHHcCCCchHHHH
Confidence 334456677888765
No 19
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=52.89 E-value=68 Score=23.87 Aligned_cols=16 Identities=13% Similarity=0.204 Sum_probs=6.8
Q ss_pred ccHHHHHHHHHHHHHH
Q psy6872 39 NNWVLNIGLVFEILVA 54 (112)
Q Consensus 39 ~N~~l~~~~~~~~~l~ 54 (112)
.|..+-.-.++++++.
T Consensus 258 ~N~imk~LTi~s~ifl 273 (322)
T COG0598 258 QNEIMKILTIVSTIFL 273 (322)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444443344444443
No 20
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=51.97 E-value=72 Score=21.58 Aligned_cols=40 Identities=13% Similarity=0.095 Sum_probs=25.9
Q ss_pred HHHHHHHHhcC--CCccccccc--ccHHHHHHHHHHHHHHHHHH
Q psy6872 19 QCAALIVCKTR--YNSIYQQKM--NNWVLNIGLVFEILVAFVLS 58 (112)
Q Consensus 19 ql~~~~~~Rs~--~~~~~~~~~--~N~~l~~~~~~~~~l~~~~~ 58 (112)
+=....|-+.. +++-|+..+ +.|++.+++.++-+..++++
T Consensus 10 ~~id~iN~~E~RDnkprFs~~Fi~~HP~L~~~M~~~y~~~~~lm 53 (155)
T PF10777_consen 10 EEIDRINREEKRDNKPRFSSSFIRNHPYLCLAMYAAYLAVAALM 53 (155)
T ss_pred HHHHHHHHHhccCCCccccHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 33445555543 456677665 88999988888876655554
No 21
>PF04235 DUF418: Protein of unknown function (DUF418); InterPro: IPR007349 Tihs is a probable integral membrane protein. It is usually found associated with (IPR007299 from INTERPRO).
Probab=51.68 E-value=67 Score=21.13 Aligned_cols=36 Identities=22% Similarity=0.221 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhhccC
Q psy6872 77 WLTPLPIAVLIVIYGEFGKIISRLYPNSFMAHHLTF 112 (112)
Q Consensus 77 w~~~~~~~~~~~~~~e~~K~~~r~~~~~~~~~~~~~ 112 (112)
+.++++.-++.+.++..+...-|+.|=||+=|..||
T Consensus 126 ~~~~~~i~~~q~~~s~~W~~~f~~GPlE~l~R~~ty 161 (163)
T PF04235_consen 126 LLIALGIWVVQLLFSYLWLRRFRRGPLEWLWRRLTY 161 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHc
Confidence 455556666667777776666777788888887765
No 22
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=45.41 E-value=39 Score=25.27 Aligned_cols=18 Identities=17% Similarity=0.021 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHhCCCCc
Q psy6872 88 VIYGEFGKIISRLYPNSF 105 (112)
Q Consensus 88 ~~~~e~~K~~~r~~~~~~ 105 (112)
+++.-+.=|+.||++++|
T Consensus 273 vvliiLYiWlyrrRK~sw 290 (295)
T TIGR01478 273 VVLIILYIWLYRRRKKSW 290 (295)
T ss_pred HHHHHHHHHHHHhhcccc
Confidence 333445668889999999
No 23
>PTZ00370 STEVOR; Provisional
Probab=43.85 E-value=41 Score=25.17 Aligned_cols=17 Identities=18% Similarity=0.014 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHhCCCCc
Q psy6872 89 IYGEFGKIISRLYPNSF 105 (112)
Q Consensus 89 ~~~e~~K~~~r~~~~~~ 105 (112)
++.-+.=|+.||++++|
T Consensus 270 vliilYiwlyrrRK~sw 286 (296)
T PTZ00370 270 VLIILYIWLYRRRKNSW 286 (296)
T ss_pred HHHHHHHHHHHhhcchh
Confidence 33445667889999999
No 24
>KOG0209|consensus
Probab=43.64 E-value=2.3e+02 Score=24.98 Aligned_cols=68 Identities=22% Similarity=0.227 Sum_probs=42.7
Q ss_pred Cccccccc-ccHHHHHHHHHHHHHHHHH--HhhhhhhhcccccCCCcch---hHHHHHHH-HHHHHHHHHHHHHH
Q psy6872 31 NSIYQQKM-NNWVLNIGLVFEILVAFVL--SYSPYLNKVLKTRPVKMKY---WLTPLPIA-VLIVIYGEFGKIIS 98 (112)
Q Consensus 31 ~~~~~~~~-~N~~l~~~~~~~~~l~~~~--~~vp~l~~~f~~~pl~~~~---w~~~~~~~-~~~~~~~e~~K~~~ 98 (112)
+.+|.... .||.++.+++++..+.... =..|-++.-|+..|++-.- ...++... ++...++++-|++.
T Consensus 1074 G~PF~Esl~eNK~l~y~ll~~~~~~~~l~tg~~peLn~~~~lV~mp~~fk~~ll~~l~lD~v~c~~~er~~~f~f 1148 (1160)
T KOG0209|consen 1074 GRPFRESLRENKGLLYGLLGSAGVIIALATGSSPELNEKFELVDMPQDFKIKLLAVLVLDFVLCYLVERVLKFFF 1148 (1160)
T ss_pred CcchhhhhhhccchHHHHHHHHHHHHHHHhccChhHHhheeeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34577667 9999998888876654333 3678899999999988432 22222222 34455565555553
No 25
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=41.00 E-value=1e+02 Score=23.96 Aligned_cols=36 Identities=3% Similarity=0.141 Sum_probs=26.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhhhcccc--cCCCc
Q psy6872 39 NNWVLNIGLVFEILVAFVLSYSPYLNKVLKT--RPVKM 74 (112)
Q Consensus 39 ~N~~l~~~~~~~~~l~~~~~~vp~l~~~f~~--~pl~~ 74 (112)
..|.+.+.+.+.+........+|-+..+|+. .++|.
T Consensus 164 ~YP~vll~v~~~v~~~Ll~~VvP~f~~if~~~~~~LP~ 201 (397)
T COG1459 164 IYPLVLLVVALVVVLFLLIFVVPQFAEIFESLGAELPA 201 (397)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhccHHHHHhhcCCCCcH
Confidence 5667777777777777777788999999983 66663
No 26
>PF10361 DUF2434: Protein of unknown function (DUF2434); InterPro: IPR018830 This entry represents a family of proteins conserved in fungi. Their function is not known.
Probab=38.19 E-value=1.7e+02 Score=21.97 Aligned_cols=88 Identities=9% Similarity=-0.004 Sum_probs=47.6
Q ss_pred HHHHHHHH-HHHHHHHHHHhcCCCccccc-------ccccHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCcchhHH-
Q psy6872 9 TAYFISIV-IAQCAALIVCKTRYNSIYQQ-------KMNNWVLNIGLVFEILVAFVLSYSPYLNKVLKTRPVKMKYWLT- 79 (112)
Q Consensus 9 t~~F~~lv-~~ql~~~~~~Rs~~~~~~~~-------~~~N~~l~~~~~~~~~l~~~~~~vp~l~~~f~~~pl~~~~w~~- 79 (112)
.++|..+. ++-++...|.|..++.-... |.+=+|.+...+.+.++..++..+..=+..+.-.|+.......
T Consensus 50 GI~fav~f~i~lvltLvnL~KHG~~~lp~eKRf~~iGRRwqWyW~~fv~a~~~iS~f~~IDVDR~yl~~~piil~sfF~~ 129 (296)
T PF10361_consen 50 GIAFAVLFAIALVLTLVNLRKHGRLYLPLEKRFYPIGRRWQWYWMLFVCACGLISLFMSIDVDRYYLQGLPIILQSFFWY 129 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCchhcccccchhHHHHHHHHHHHHHHHhhheeeeecHHhcccccHHHHHHHHH
Confidence 34554433 33445556677655432221 1244566767777777777777777656666556655544333
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy6872 80 PLPIAVLIVIYGEFGKI 96 (112)
Q Consensus 80 ~~~~~~~~~~~~e~~K~ 96 (112)
....+.+..+|+.++.|
T Consensus 130 l~~~~~lA~vWE~VRhW 146 (296)
T PF10361_consen 130 LMQPGTLAAVWEAVRHW 146 (296)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 34444555666555444
No 27
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=37.52 E-value=60 Score=24.37 Aligned_cols=28 Identities=21% Similarity=0.184 Sum_probs=19.5
Q ss_pred hhhcccccCCCcchhHHHHHHHHHHHHH
Q psy6872 63 LNKVLKTRPVKMKYWLTPLPIAVLIVIY 90 (112)
Q Consensus 63 l~~~f~~~pl~~~~w~~~~~~~~~~~~~ 90 (112)
++.+++.-|.|..++...+.+..++...
T Consensus 14 l~~~~g~~PFSvgdi~~~~~il~ll~~~ 41 (318)
T PF12725_consen 14 LRRLFGWFPFSVGDILYYLLILFLLYYL 41 (318)
T ss_pred HHHhccCcChhHHHHHHHHHHHHHHHHH
Confidence 5678888888888877766555444433
No 28
>TIGR02120 GspF general secretion pathway protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.
Probab=34.97 E-value=92 Score=23.70 Aligned_cols=30 Identities=3% Similarity=-0.013 Sum_probs=21.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhhhccc
Q psy6872 39 NNWVLNIGLVFEILVAFVLSYSPYLNKVLK 68 (112)
Q Consensus 39 ~N~~l~~~~~~~~~l~~~~~~vp~l~~~f~ 68 (112)
..|.+...+.+.+........+|-+.++|.
T Consensus 167 ~YP~~ll~~~~~v~~~~~~~v~P~f~~~f~ 196 (399)
T TIGR02120 167 IYPAVLTVVAIGVVIFLLAYVVPKVVEQFA 196 (399)
T ss_pred HhHHHHHHHHHHHHHHHHHHhcccHHHHHh
Confidence 556666666666666666678898888885
No 29
>PRK09546 zntB zinc transporter; Reviewed
Probab=34.89 E-value=1.9e+02 Score=21.43 Aligned_cols=14 Identities=7% Similarity=-0.028 Sum_probs=6.0
Q ss_pred hhhccccc--CCCcch
Q psy6872 63 LNKVLKTR--PVKMKY 76 (112)
Q Consensus 63 l~~~f~~~--pl~~~~ 76 (112)
+..++|.. .+|..+
T Consensus 280 IaGiyGMNf~~mPel~ 295 (324)
T PRK09546 280 LTGLFGVNLGGIPGGG 295 (324)
T ss_pred HHhhhccccCCCCCcC
Confidence 34445442 355443
No 30
>KOG2802|consensus
Probab=31.79 E-value=1.4e+02 Score=23.51 Aligned_cols=79 Identities=13% Similarity=0.066 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhcCCCcc---cccccccHHHHHHHHHHHHHHHHH---HhhhhhhhcccccCCCcchhHHHHHHHHH----
Q psy6872 17 IAQCAALIVCKTRYNSI---YQQKMNNWVLNIGLVFEILVAFVL---SYSPYLNKVLKTRPVKMKYWLTPLPIAVL---- 86 (112)
Q Consensus 17 ~~ql~~~~~~Rs~~~~~---~~~~~~N~~l~~~~~~~~~l~~~~---~~vp~l~~~f~~~pl~~~~w~~~~~~~~~---- 86 (112)
.-|.+.++..++-.+++ +..|.+|--...+....+++..+. ...-+...+++-+|++...|..++..+-.
T Consensus 247 ~NQ~lLa~Gis~S~q~PD~lhPYGYsnmRyVsSLISgvGIfc~G~GlSiyhGv~gLlhpePi~~l~~ay~il~gSl~~eG 326 (503)
T KOG2802|consen 247 CNQLLLALGISKSVQTPDPLHPYGYSNMRYVSSLISGVGIFCMGCGLSIYHGVMGLLHPEPIESLLWAYCILAGSLVSEG 326 (503)
T ss_pred HHHHHHHhhhhhcccCCCCCCCCcccchhHHHHHHhccceeeecccchhhhccccccCCCCCcchHHHHHHHhhHHHhcc
Confidence 35777777776654432 344554433333333333332211 12234677888899999999888766533
Q ss_pred ---HHHHHHHHH
Q psy6872 87 ---IVIYGEFGK 95 (112)
Q Consensus 87 ---~~~~~e~~K 95 (112)
.+.+.|+.|
T Consensus 327 asllvAi~evkr 338 (503)
T KOG2802|consen 327 ASLLVAINEVKR 338 (503)
T ss_pred hHHHHHHHHHHH
Confidence 345556544
No 31
>PF08552 Kei1: Inositolphosphorylceramide synthase subunit Kei1; InterPro: IPR013862 This entry indicates Golgi proteins of unknown function.
Probab=30.97 E-value=1.1e+02 Score=21.32 Aligned_cols=44 Identities=14% Similarity=0.089 Sum_probs=24.7
Q ss_pred hhhcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhCCCCch
Q psy6872 63 LNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPNSFM 106 (112)
Q Consensus 63 l~~~f~~~pl~~~~w~~~~~~~~~~~~~~e~~K~~~r~~~~~~~ 106 (112)
+-.+|--.|+++.||..=+-.-+...+.....+-++++.+...+
T Consensus 31 lLAlfTG~~ls~~Q~s~YlySi~~L~~~~~~l~~Irk~~~~~~l 74 (189)
T PF08552_consen 31 LLALFTGHPLSFLQLSMYLYSILALVLFAWGLPHIRKQSPLQCL 74 (189)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHH
Confidence 33445557888888876554444444444455555555444333
No 32
>PF10746 Phage_holin_6: Phage holin family 6; InterPro: IPR019682 This entry represents a protein conserved in Caudovirales (known as tailed bacteriophages). Holins are a diverse family of proteins that cause bacterial membrane lysis during late-protein synthesis.
Probab=27.33 E-value=1.3e+02 Score=17.36 Aligned_cols=33 Identities=15% Similarity=0.087 Sum_probs=17.6
Q ss_pred cCCCcchhHHHHHHHHHHH-HHHHHHHHHHHhCC
Q psy6872 70 RPVKMKYWLTPLPIAVLIV-IYGEFGKIISRLYP 102 (112)
Q Consensus 70 ~pl~~~~w~~~~~~~~~~~-~~~e~~K~~~r~~~ 102 (112)
.-+|+.+|..+..++-..+ ...-+.|+.+.+++
T Consensus 29 ~GLslneWfyiati~YtvlQig~~v~k~v~~~kr 62 (66)
T PF10746_consen 29 WGLSLNEWFYIATIAYTVLQIGYLVWKKVRDWKR 62 (66)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578889987665553222 22334555544433
No 33
>PF12555 TPPK_C: Thiamine pyrophosphokinase C terminal; InterPro: IPR022215 This domain family is found in bacteria, and is approximately 50 amino acids in length. The proteins in this family catalyses the pyrophosphorylation of thiamine in yeast and synthesizes thiamine pyrophosphate (TPP), a thiamine coenzyme.
Probab=24.94 E-value=60 Score=17.67 Aligned_cols=31 Identities=26% Similarity=0.374 Sum_probs=13.7
Q ss_pred cccHHHHHHH-HHHHHHHHHHHhhhhhhhccc
Q psy6872 38 MNNWVLNIGL-VFEILVAFVLSYSPYLNKVLK 68 (112)
Q Consensus 38 ~~N~~l~~~~-~~~~~l~~~~~~vp~l~~~f~ 68 (112)
.+++.+.+.+ .+.+.+.+.+...|..+++++
T Consensus 11 is~~~~~~lvlaaLvav~v~l~~s~~g~~~~~ 42 (53)
T PF12555_consen 11 ISGWALALLVLAALVAVAVALLISPAGQSFLD 42 (53)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 3344433333 333444444445555555544
No 34
>PF07256 DUF1435: Protein of unknown function (DUF1435); InterPro: IPR009885 This family consists of several hypothetical Enterobacterial proteins of around 80 residues in length. The function of this family is unknown.
Probab=24.25 E-value=1.5e+02 Score=17.69 Aligned_cols=33 Identities=12% Similarity=0.294 Sum_probs=25.4
Q ss_pred cccCCCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q psy6872 68 KTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRL 100 (112)
Q Consensus 68 ~~~pl~~~~w~~~~~~~~~~~~~~e~~K~~~r~ 100 (112)
....++..+|-..+..+.......-..|..|+.
T Consensus 23 ~~~~ls~~~~r~~iv~amL~T~~MLfh~rlRH~ 55 (78)
T PF07256_consen 23 ALANLSFDQWRIVIVVAMLLTLAMLFHRRLRHF 55 (78)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHhHhhhHH
Confidence 446788999999988888888777777766553
No 35
>PF09971 DUF2206: Predicted membrane protein (DUF2206); InterPro: IPR018701 This family of predicted membrane proteins from archaea has no known function.
Probab=22.22 E-value=3.7e+02 Score=20.70 Aligned_cols=54 Identities=11% Similarity=0.168 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhhhhhhhcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy6872 47 LVFEILVAFVLSYSPYLNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYP 102 (112)
Q Consensus 47 ~~~~~~l~~~~~~vp~l~~~f~~~pl~~~~w~~~~~~~~~~~~~~e~~K~~~r~~~ 102 (112)
.+...++.++.+.+|.++..++.+.+- +-...+...+..+......|.+.|.+.
T Consensus 154 s~~~~iiLia~i~lP~fa~~mn~~RLy--~itli~LAPf~iiG~~~~~~~i~k~~~ 207 (367)
T PF09971_consen 154 SLVSLIILIASIVLPFFASVMNPTRLY--QITLIFLAPFFIIGGITLFKLINKLFR 207 (367)
T ss_pred HHHHHHHHHHHHhccchhhhcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333455566667789988788766653 233334444444444444454444333
No 36
>COG4280 Predicted membrane protein [Function unknown]
Probab=20.06 E-value=3.4e+02 Score=19.49 Aligned_cols=37 Identities=19% Similarity=0.212 Sum_probs=20.4
Q ss_pred hhhhcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q psy6872 62 YLNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRL 100 (112)
Q Consensus 62 ~l~~~f~~~pl~~~~w~~~~~~~~~~~~~~e~~K~~~r~ 100 (112)
.+++.+...|++.-|. +.+.-+..+.+--++|..+|.
T Consensus 53 vlGk~L~lvPln~lqi--v~gvLLllFG~rw~Rsavrr~ 89 (236)
T COG4280 53 VLGKLLYLVPLNYLQI--VSGVLLLLFGYRWIRSAVRRF 89 (236)
T ss_pred HHccceeeeechHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 3788888899887553 233333333333345555443
Done!